BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8714
(562 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|156551898|ref|XP_001606777.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Nasonia vitripennis]
Length = 852
Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/533 (69%), Positives = 431/533 (80%), Gaps = 3/533 (0%)
Query: 32 NGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREAT 91
NG+CSVHEW+G + V FKMTSVCGH+M LDF KYNNWDKVDP ELFSCPTEK+EA
Sbjct: 33 NGSCSVHEWLGQFRSETVNFKMTSVCGHVMSLDFIGKYNNWDKVDPAELFSCPTEKKEAV 92
Query: 92 PKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININ-SPKTVWRARFSA 150
PKLK+P+FLA E C++LVLWLDCDKEGENICFEV++AV+ +P +WRA+FSA
Sbjct: 93 PKLKIPSFLAKEGGYCDYLVLWLDCDKEGENICFEVIQAVQQGSTRRLNPNDIWRAKFSA 152
Query: 151 ITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISY 210
ITDKDIKAA+ NL KPN EARSVDARQELDLRIGCAFTR+QTKFFQGKYGDLDASLISY
Sbjct: 153 ITDKDIKAALANLAKPNENEARSVDARQELDLRIGCAFTRFQTKFFQGKYGDLDASLISY 212
Query: 211 GPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL-NLNGVAVSVTWSRGHIFDKSTCNVFF 269
GPCQTPTLGFCV+RHD+I+TFKP+PYW+L +T+ +G+ V ++WSR FDK N+F
Sbjct: 213 GPCQTPTLGFCVQRHDEIQTFKPDPYWVLQVTVKTADGLDVVLSWSRVRSFDKEVANIFL 272
Query: 270 KAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV 329
V++ H TV +QS+ KSK +P ALNTVELMRVASSGLGMGPHHAMQIAERLYTQGY+
Sbjct: 273 SHVKEHDHATVTSIQSTEKSKARPIALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYI 332
Query: 330 SYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTK 389
SYPRTETT YPENFDLV+ L+QQ++S DWGD VR +LS+GISKP+KG D GDHPPITP K
Sbjct: 333 SYPRTETTSYPENFDLVSTLKQQQNSSDWGDEVRRILSSGISKPKKGHDAGDHPPITPMK 392
Query: 390 LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTG 449
A+R +LDGD+WRLYDYI RHFI TL D Y AKF + E F++ L+ PG+T
Sbjct: 393 SASRNELDGDSWRLYDYITRHFIATLAKDCKYLSTTAKFEIGMETFSVTGHSLIDPGYTS 452
Query: 450 VMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASI 508
++TW A+ NES+P F G+ + IQ K++E T PPDYLTESELI+LMEKHGIGTDASI
Sbjct: 453 LLTWQALSNNESLPRFSIGERVKIQESKLLECFTQPPDYLTESELITLMEKHGIGTDASI 512
Query: 509 PVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
PVHINNIC RNYV V +GR+LVPTSLGIVLVHGYQKID ELV PTMRSA Q
Sbjct: 513 PVHINNICIRNYVNVATGRKLVPTSLGIVLVHGYQKIDPELVLPTMRSAVEEQ 565
>gi|91081101|ref|XP_975504.1| PREDICTED: similar to prokaryotic DNA topoisomerase [Tribolium
castaneum]
gi|270005298|gb|EFA01746.1| hypothetical protein TcasGA2_TC007344 [Tribolium castaneum]
Length = 852
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/534 (67%), Positives = 432/534 (80%), Gaps = 4/534 (0%)
Query: 32 NGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREAT 91
NG CSVHEW G G KMTSVCGH+MG+DF SKYNNWD+VDP+ELFSCP EK+EAT
Sbjct: 33 NGICSVHEWNGTFQGAPARLKMTSVCGHVMGVDFISKYNNWDRVDPVELFSCPIEKKEAT 92
Query: 92 PKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQIN--INSPKTVWRARFS 149
PK K+PAFL++EAK C++LVLWLDCDKEGENICFEVM +V +N + S K +RARFS
Sbjct: 93 PKFKMPAFLSHEAKGCDYLVLWLDCDKEGENICFEVMNSVARSMNGDVYSDKVTFRARFS 152
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
AITDKDIKAA NL PN EARSVDARQELDLRIGCAFTR+QTKFFQG+YGDLD+SLIS
Sbjct: 153 AITDKDIKAAFNNLAHPNENEARSVDARQELDLRIGCAFTRFQTKFFQGRYGDLDSSLIS 212
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL-NLNGVAVSVTWSRGHIFDKSTCNVF 268
YGPCQTPTLGFCV+RHD+I+TFKPE YW++ T+ +G V + W R FDK N+F
Sbjct: 213 YGPCQTPTLGFCVQRHDQIQTFKPEAYWVIKATIVTKDGNDVHLDWKRVRCFDKEVANMF 272
Query: 269 FKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGY 328
+ ++ +KH V++V S K+K++P ALNTVELMRVASSGLGMGPHHAMQIAE+LYTQGY
Sbjct: 273 LQQIKDQKHAKVLNVSSKEKAKSRPVALNTVELMRVASSGLGMGPHHAMQIAEKLYTQGY 332
Query: 329 VSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPT 388
+SYPRTETT+YPENFDLV VLRQQ++S +WGD VRE+LS G+++P++G D GDHPPITP
Sbjct: 333 ISYPRTETTRYPENFDLVGVLRQQQNSTEWGDEVREILSRGVNRPKQGHDAGDHPPITPM 392
Query: 389 KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
K ATR + D D+W+LYDYI RHFIGTL D Y A ++ +E+FT+ K LL PGFT
Sbjct: 393 KSATRNEFDSDSWKLYDYITRHFIGTLARDCKYLSTTATIAINEEIFTVTGKTLLDPGFT 452
Query: 449 GVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDAS 507
VMTW A+ KNE +P+ + +PI+ +++ E +T+PPDYLTE+ELI+LME HGIGTDAS
Sbjct: 453 SVMTWQALDKNEIVPNLTENESVPIKDMRLTEHQTSPPDYLTEAELITLMETHGIGTDAS 512
Query: 508 IPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
IPVHINNICQRNYVTVT+GR+L PT+LGIVLVHGYQKID ELV PTMRSA Q
Sbjct: 513 IPVHINNICQRNYVTVTAGRKLKPTTLGIVLVHGYQKIDAELVLPTMRSAVEEQ 566
>gi|66509929|ref|XP_625165.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 2 [Apis
mellifera]
Length = 851
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/539 (67%), Positives = 435/539 (80%), Gaps = 3/539 (0%)
Query: 26 TPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPT 85
T + +NG+CSVHEW+G + V FKMTSV GH+M LDF KYNNWDKVDP ELFSCPT
Sbjct: 27 TSRKGLNGSCSVHEWIGQFRSETVNFKMTSVFGHVMTLDFIGKYNNWDKVDPAELFSCPT 86
Query: 86 EKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININ-SPKTVW 144
EK+EA P+LK+P FLA E C++LVLWLDCDKEGENICFEV+ AV+ +N +P +W
Sbjct: 87 EKKEAVPRLKIPYFLAKEGAHCDYLVLWLDCDKEGENICFEVIYAVQQGMNKRLNPNDIW 146
Query: 145 RARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLD 204
RARFSAIT+KDIK+A+ NL+KPN EA+SVDARQELDLRIGCAFTR+QTKFFQGKYGDLD
Sbjct: 147 RARFSAITEKDIKSALVNLIKPNENEAKSVDARQELDLRIGCAFTRFQTKFFQGKYGDLD 206
Query: 205 ASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL-NLNGVAVSVTWSRGHIFDKS 263
SLISYGPCQTPTLGFCV+RHD+I+TFKP+PYW+L +T+ + +G + + W+R FDK
Sbjct: 207 VSLISYGPCQTPTLGFCVQRHDEIQTFKPDPYWVLQVTVKSSDGQDIILNWTRVRSFDKE 266
Query: 264 TCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERL 323
N+F V++ T++ V+S+ K+K++P ALNTVELMRVASSGLGMGPHHAMQIAERL
Sbjct: 267 IANMFLSHVKEYDQATIISVESTEKTKSRPIALNTVELMRVASSGLGMGPHHAMQIAERL 326
Query: 324 YTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHP 383
YTQGY+SYPRTETT YPENFDL+A L+QQ+++PDWGD VR++L+ GI++P+KG +VGDHP
Sbjct: 327 YTQGYISYPRTETTLYPENFDLLAALKQQQNNPDWGDQVRKILTTGINRPKKGCNVGDHP 386
Query: 384 PITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLL 443
PITP K ATR +LDGD WRLYDYI RHFI TL D Y KF + E+FT LL
Sbjct: 387 PITPMKHATRNELDGDTWRLYDYITRHFIATLAHDCKYLSTTIKFEIGMEIFTANGHSLL 446
Query: 444 HPGFTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGI 502
PG+T ++TW A+ N+++P F PG+ + IQ +K+VE T PPDYLTESELISLMEKHGI
Sbjct: 447 DPGYTSILTWQALGSNDNLPRFTPGEKVNIQEIKLVECYTQPPDYLTESELISLMEKHGI 506
Query: 503 GTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
GTDASIPVHINNIC RNYV V +GR+LVPTSLGIVLVHGYQKID ELV PTMRSA Q
Sbjct: 507 GTDASIPVHINNICMRNYVNVATGRKLVPTSLGIVLVHGYQKIDPELVLPTMRSAVEEQ 565
>gi|380025214|ref|XP_003696372.1| PREDICTED: DNA topoisomerase 3-beta-1 [Apis florea]
Length = 851
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/539 (66%), Positives = 434/539 (80%), Gaps = 3/539 (0%)
Query: 26 TPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPT 85
T + +NG+CSVHEW+G + V FKMTSV GH+M LDF KYNNWDKVDP ELFSCPT
Sbjct: 27 TSRKGLNGSCSVHEWIGQFRSETVNFKMTSVFGHVMTLDFIGKYNNWDKVDPAELFSCPT 86
Query: 86 EKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININ-SPKTVW 144
EK+EA P+LK+P FLA E C++LVLWLDCDKEGENICFEV+ AV+ +N +P +W
Sbjct: 87 EKKEAVPRLKIPYFLAKEGAHCDYLVLWLDCDKEGENICFEVIYAVQQGMNKRLNPNDIW 146
Query: 145 RARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLD 204
RARFSAIT+KDIK+A+ NL+KPN EA+SVDARQELDLRIGCAFTR+QTKFFQGKYGDLD
Sbjct: 147 RARFSAITEKDIKSALVNLIKPNENEAKSVDARQELDLRIGCAFTRFQTKFFQGKYGDLD 206
Query: 205 ASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL-NLNGVAVSVTWSRGHIFDKS 263
SLISYGPCQTPTLGFCV+RHD+I+TFKP+PYW+L +T+ + +G + + W+R FDK
Sbjct: 207 VSLISYGPCQTPTLGFCVQRHDEIQTFKPDPYWVLQVTVKSSDGQDIILNWTRVRSFDKE 266
Query: 264 TCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERL 323
N+F V++ T++ V+S+ K+K++P ALNTVELMRVASSGLGMGPHHAMQIAERL
Sbjct: 267 IANMFLSHVKEYDQATIISVESTEKTKSRPIALNTVELMRVASSGLGMGPHHAMQIAERL 326
Query: 324 YTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHP 383
YTQGY+SYPRTETT YPENFDL+A L+QQ+++PDWGD VR++L+ GI++P+KG +VGDHP
Sbjct: 327 YTQGYISYPRTETTLYPENFDLLAALKQQQNNPDWGDQVRKILTTGINRPKKGCNVGDHP 386
Query: 384 PITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLL 443
PITP K ATR +LDGD WRLYDYI RHFI TL D Y KF + E+FT LL
Sbjct: 387 PITPMKHATRNELDGDTWRLYDYITRHFIATLAHDCKYLSTTVKFEIGMEIFTANGHSLL 446
Query: 444 HPGFTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGI 502
PG+T ++TW + N+++P F PG+ + IQ +K+VE T PPDYLTESELISLMEKHGI
Sbjct: 447 DPGYTSILTWQTLGSNDNLPRFTPGEKVNIQEIKLVECYTQPPDYLTESELISLMEKHGI 506
Query: 503 GTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
GTDASIPVHINNIC RNYV V +GR+LVPTSLGIVLVHGYQKID ELV PTMRSA Q
Sbjct: 507 GTDASIPVHINNICMRNYVNVATGRKLVPTSLGIVLVHGYQKIDPELVLPTMRSAVEEQ 565
>gi|383857261|ref|XP_003704123.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Megachile rotundata]
Length = 851
Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/539 (66%), Positives = 432/539 (80%), Gaps = 3/539 (0%)
Query: 26 TPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPT 85
T + +NG+CSVHEWVG + V FKMTSVCGH+M LDF KYNNWDKVDP ELFSCPT
Sbjct: 27 TSRKGLNGSCSVHEWVGQFRSETVNFKMTSVCGHVMTLDFIGKYNNWDKVDPAELFSCPT 86
Query: 86 EKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININ-SPKTVW 144
EK+EA PKLK+P FLA E C++LVLWLDCDKEGENICFEV+ AV+ +N +P +W
Sbjct: 87 EKKEAVPKLKIPYFLAKEGAHCDYLVLWLDCDKEGENICFEVIYAVQQGMNRRLNPNDIW 146
Query: 145 RARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLD 204
RARFSAIT+KDIK+A+ NL+KPN EA+SVDARQELDLRIGCAFTR+QTKFFQGKYGDLD
Sbjct: 147 RARFSAITEKDIKSALANLIKPNENEAKSVDARQELDLRIGCAFTRFQTKFFQGKYGDLD 206
Query: 205 ASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL-NLNGVAVSVTWSRGHIFDKS 263
ASLISYGPCQTPTLGFCV+RHD+I+TFKP+PYW+L +T+ + +G + ++WSR FDK
Sbjct: 207 ASLISYGPCQTPTLGFCVQRHDEIQTFKPDPYWVLQVTVKSSDGQDIILSWSRVRSFDKE 266
Query: 264 TCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERL 323
N+F +++ TV+ V+SS K+K++P ALNTVELMRVASSGLGMGPHHAMQIAERL
Sbjct: 267 IANMFLSHIKEYDQATVLSVESSEKTKSRPIALNTVELMRVASSGLGMGPHHAMQIAERL 326
Query: 324 YTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHP 383
YTQGY+SYPRTETT YPENFDL A L+QQ+++PDWGD VR++L GI++P+KG + GDHP
Sbjct: 327 YTQGYISYPRTETTLYPENFDLPAALKQQQNNPDWGDQVRKILMTGINRPKKGHNAGDHP 386
Query: 384 PITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLL 443
PITP K ATR++LDGD+WRLYDYI RHFI TL D Y KF + E FT L+
Sbjct: 387 PITPMKHATRSELDGDSWRLYDYITRHFIATLAADCKYLSTTVKFEIGMETFTANGHSLI 446
Query: 444 HPGFTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGI 502
PG+T ++TW + N+++P F + + IQ K++E T PPDYLTE+ELISLMEKHGI
Sbjct: 447 DPGYTSILTWQTLGSNDTLPRFTVNEKVNIQETKLLECYTQPPDYLTEAELISLMEKHGI 506
Query: 503 GTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
GTDASIPVHINNIC RNYV V +GR+LVPTSLGIVLVHGYQKID ELV PTMRSA Q
Sbjct: 507 GTDASIPVHINNICMRNYVNVAAGRKLVPTSLGIVLVHGYQKIDPELVLPTMRSAVEEQ 565
>gi|307184245|gb|EFN70718.1| DNA topoisomerase 3-beta-1 [Camponotus floridanus]
Length = 851
Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/537 (67%), Positives = 430/537 (80%), Gaps = 9/537 (1%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREA 90
+NG+CSVHEWVG + V FKMTSVCGH+M LDF KYNNWDKVDP ELFSCPTEK+EA
Sbjct: 32 LNGSCSVHEWVGQFKSETVNFKMTSVCGHVMTLDFIGKYNNWDKVDPAELFSCPTEKKEA 91
Query: 91 TPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRH----QININSPKTVWRA 146
PKLK+P FLA E C++L+LWLDCDKEGENICFEV+ AV+ +++IN +WRA
Sbjct: 92 VPKLKIPYFLAKEGSHCDYLILWLDCDKEGENICFEVINAVQQGMHRKLHIND---IWRA 148
Query: 147 RFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDAS 206
RFSAIT+KDIK+A+ NL+KPN EA+SVDARQELDLRIGCAFTRYQTKFFQGKYGDLD S
Sbjct: 149 RFSAITEKDIKSALSNLIKPNENEAKSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDVS 208
Query: 207 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNL-NGVAVSVTWSRGHIFDKSTC 265
LISYGPCQTPTLGFCV+RHD+I+TFKP+PYW+L +T+ +G + + WSR FDK
Sbjct: 209 LISYGPCQTPTLGFCVQRHDEIQTFKPDPYWVLQVTIKCSDGQDIVLNWSRVRSFDKEVA 268
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
N+F V++ TVV VQS+ KSK++P ALNTVELMR+ASSGLGMGP HAMQIAERLYT
Sbjct: 269 NMFLSHVKEHDRATVVSVQSTEKSKSRPIALNTVELMRIASSGLGMGPQHAMQIAERLYT 328
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPI 385
QGY+SYPRTETT YPENFDL++ L+QQ++SPDWG+ VR++++ GI++P+KG D GDHPPI
Sbjct: 329 QGYISYPRTETTSYPENFDLLSTLKQQQNSPDWGEEVRKIVAAGINRPKKGHDAGDHPPI 388
Query: 386 TPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHP 445
TP K ATR +LDGD+WRLYDYI RHFI TL D Y KF + E FT LL P
Sbjct: 389 TPMKHATRNELDGDSWRLYDYITRHFIATLARDCKYMSTTIKFEIGIETFTATGHSLLSP 448
Query: 446 GFTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGT 504
G+T ++TW A+ N+++P F + + IQ K++E T PPDYLTE+ELI+LMEKHGIGT
Sbjct: 449 GYTSILTWQALGNNDTLPKFTLDEKVNIQEAKLIECYTQPPDYLTEAELITLMEKHGIGT 508
Query: 505 DASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
DASIPVHINNIC RNYVTV +GR+LVPTSLGIVLVHGYQKID ELV PTMRSA Q
Sbjct: 509 DASIPVHINNICIRNYVTVAAGRKLVPTSLGIVLVHGYQKIDPELVLPTMRSAVEEQ 565
>gi|340722711|ref|XP_003399746.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Bombus terrestris]
Length = 851
Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/539 (66%), Positives = 432/539 (80%), Gaps = 3/539 (0%)
Query: 26 TPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPT 85
T + +NG+CS+HEW+G + + FKMTSV GH+M LDF KYNNWDKVDP ELFSCPT
Sbjct: 27 TSRKGLNGSCSIHEWIGQFRSENINFKMTSVFGHVMTLDFIGKYNNWDKVDPAELFSCPT 86
Query: 86 EKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININ-SPKTVW 144
EK+EA P+LK+P LA E C++L+LWLDCDKEGENICFEV+ AV+ +N +P +W
Sbjct: 87 EKKEAVPRLKIPFLLAKEGAHCDYLILWLDCDKEGENICFEVIHAVQQGMNKRLNPNDIW 146
Query: 145 RARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLD 204
RARFSAIT+KDIKAA+ NLV+PN EA+SVDARQE+DLRIGCAFTR+QTKFFQGKYGDLD
Sbjct: 147 RARFSAITEKDIKAALANLVRPNENEAKSVDARQEIDLRIGCAFTRFQTKFFQGKYGDLD 206
Query: 205 ASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNL-NGVAVSVTWSRGHIFDKS 263
SLISYGPCQTPTLGFCV+RHD+I+TFKP+PYW+L +T+ +G + ++WSR FDK
Sbjct: 207 VSLISYGPCQTPTLGFCVQRHDEIQTFKPDPYWVLQVTVKTSDGQDIILSWSRVRSFDKE 266
Query: 264 TCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERL 323
N+F V++ TV+ V+S+ K+K++P ALNTVELMR+ASSGLGMGPHHAMQIAERL
Sbjct: 267 IANMFLSHVKEYDQATVISVESTEKTKSRPIALNTVELMRIASSGLGMGPHHAMQIAERL 326
Query: 324 YTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHP 383
YTQGY+SYPRTETT YPENFDL+A L+QQ+++PDWGD VR++L+ GI++P+KG +VGDHP
Sbjct: 327 YTQGYISYPRTETTLYPENFDLLAALKQQQNNPDWGDQVRKILATGINRPKKGLNVGDHP 386
Query: 384 PITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLL 443
PITP K ATR LDGD WRLYDYI RHFI TL D Y KF + EMF +
Sbjct: 387 PITPMKHATRNDLDGDTWRLYDYITRHFIATLAHDCKYLSTTVKFEIGMEMFMANGHSSI 446
Query: 444 HPGFTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGI 502
PG+T ++TW A+ N+++P F PG+ + IQ +K+VE T PPDYLTESELISLMEKHGI
Sbjct: 447 DPGYTNILTWQALGSNDTLPKFTPGEKVNIQEMKLVECYTQPPDYLTESELISLMEKHGI 506
Query: 503 GTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
GTDASIPVHINNIC RNYV VT+GR+LVPTSLGIVLVHGYQKID ELV PTMRSA Q
Sbjct: 507 GTDASIPVHINNICMRNYVNVTTGRKLVPTSLGIVLVHGYQKIDPELVLPTMRSAVEEQ 565
>gi|350424370|ref|XP_003493773.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Bombus impatiens]
Length = 851
Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/539 (66%), Positives = 434/539 (80%), Gaps = 3/539 (0%)
Query: 26 TPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPT 85
T + +NG+CS+HEW+G + + FKMTSV GH+M LDF KYNNWDKVDP ELFSCPT
Sbjct: 27 TSRKGLNGSCSIHEWIGQFRSENINFKMTSVFGHVMTLDFIGKYNNWDKVDPAELFSCPT 86
Query: 86 EKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININ-SPKTVW 144
EK+EA P+LK+P LA E C++L+LWLDCDKEGENICFEV+ AV+ +N +P +W
Sbjct: 87 EKKEAVPRLKIPFLLAKEGAHCDYLILWLDCDKEGENICFEVIHAVQQGMNRRLNPNDIW 146
Query: 145 RARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLD 204
RARFSAIT+KDIKAA+ NLV+PN EA+SVDARQE+DLRIGCAFTR+QTKFFQGKYGDLD
Sbjct: 147 RARFSAITEKDIKAALANLVRPNENEAKSVDARQEIDLRIGCAFTRFQTKFFQGKYGDLD 206
Query: 205 ASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL-NLNGVAVSVTWSRGHIFDKS 263
SLISYGPCQTPTLGFCV+RHD+I+TFKP+PYW+L +T+ + +G + ++WSR FDK
Sbjct: 207 VSLISYGPCQTPTLGFCVQRHDEIQTFKPDPYWVLQVTVKSSDGQDIILSWSRVRSFDKE 266
Query: 264 TCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERL 323
N+F V++ TV+ V+S+ K+K++P ALNTVELMR+ASSGLGMGPHHAMQIAERL
Sbjct: 267 IANMFLSHVKEYDQATVISVESTEKTKSRPIALNTVELMRIASSGLGMGPHHAMQIAERL 326
Query: 324 YTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHP 383
YTQGY+SYPRTETT YPENFDL+A L+QQ+++PDWGD VR++L+ GI++P+KG +VGDHP
Sbjct: 327 YTQGYISYPRTETTLYPENFDLLAALKQQQNNPDWGDQVRKILATGINRPKKGLNVGDHP 386
Query: 384 PITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLL 443
PITP K ATR LDGD WRLYDYI RHFI TL D Y KF + E+FT +
Sbjct: 387 PITPMKHATRNDLDGDTWRLYDYITRHFIATLAHDCKYLSTTVKFEIGMEVFTANGHSSI 446
Query: 444 HPGFTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGI 502
PG+T ++TW A+ N+++P F PG+ + IQ +K+VE T PPDYLTESELISLMEKHGI
Sbjct: 447 DPGYTNILTWQALGSNDTLPRFTPGEKVNIQEMKLVECYTQPPDYLTESELISLMEKHGI 506
Query: 503 GTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
GTDASIPVHINNIC RNYV VT+GR+LVPTSLGIVLVHGYQKID ELV PTMRSA Q
Sbjct: 507 GTDASIPVHINNICMRNYVNVTTGRKLVPTSLGIVLVHGYQKIDPELVLPTMRSAVEEQ 565
>gi|307203099|gb|EFN82279.1| DNA topoisomerase 3-beta-1 [Harpegnathos saltator]
Length = 851
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/534 (66%), Positives = 424/534 (79%), Gaps = 3/534 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREA 90
+NG C VHEWV + V FKMTSVCGH+M LDF KYNNWDKVDP ELFSCPTEK+EA
Sbjct: 32 LNGTCPVHEWVDQFKYETVTFKMTSVCGHVMTLDFIGKYNNWDKVDPAELFSCPTEKKEA 91
Query: 91 TPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININ-SPKTVWRARFS 149
PKLK+P LA E C++L+LWLDCDKEGENICFEV+ AV+ ++ P +WRARFS
Sbjct: 92 LPKLKIPYILAKEGSHCDYLILWLDCDKEGENICFEVINAVQQGMHRKLHPNDIWRARFS 151
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
AIT+KDIK+A+ NL+KPN EA+SVDARQELDLRIGCAFTRYQTKFFQGKYGDLD SLIS
Sbjct: 152 AITEKDIKSALENLIKPNENEAKSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDVSLIS 211
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNL-NGVAVSVTWSRGHIFDKSTCNVF 268
YGPCQTPTLGFCV+RHD+I+TFKP+PYW+L +T+ +G + + WSR FDK N+F
Sbjct: 212 YGPCQTPTLGFCVQRHDEIQTFKPDPYWVLQVTIKCADGQDIILNWSRVRSFDKEVANMF 271
Query: 269 FKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGY 328
V++ + TVV +QS+ KSK++P ALNTVELMRVASSGLGMGP HAMQIAERLYTQGY
Sbjct: 272 LSHVKEYERATVVSIQSTEKSKSRPIALNTVELMRVASSGLGMGPQHAMQIAERLYTQGY 331
Query: 329 VSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPT 388
+SYPRTETT YPENFDL++ L+QQ+++P+WG+ VR++L+ GI++P+KG D GDHPPITP
Sbjct: 332 ISYPRTETTSYPENFDLLSTLKQQQNNPEWGEDVRKILAAGINRPKKGHDAGDHPPITPM 391
Query: 389 KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
K ATR +LDGD+WRLYDYI RHFI TL D Y KF + E+FT LL G+T
Sbjct: 392 KHATRNELDGDSWRLYDYITRHFIATLARDCKYLSTTVKFEIGMEIFTATGHSLLDAGYT 451
Query: 449 GVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDAS 507
++TW A+ ++++P F + + IQ K++E T PPDYLTE+ELISLMEKHGIGTDAS
Sbjct: 452 SILTWQALGSSDTLPKFTAEEKVNIQEAKLLECYTQPPDYLTEAELISLMEKHGIGTDAS 511
Query: 508 IPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
IPVHINNIC RNYV VT GRRLVPTSLGIVLVHGYQKID ELV PTMRSA Q
Sbjct: 512 IPVHINNICIRNYVNVTVGRRLVPTSLGIVLVHGYQKIDPELVLPTMRSAVEEQ 565
>gi|332027377|gb|EGI67460.1| DNA topoisomerase 3-beta-1 [Acromyrmex echinatior]
Length = 848
Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/537 (66%), Positives = 426/537 (79%), Gaps = 12/537 (2%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREA 90
+NG+CSVHEWVG + V FKMTSVCGH+M LDF KYNNWDKVDP ELFSC TEK+EA
Sbjct: 32 LNGSCSVHEWVGQFRSETVNFKMTSVCGHVMTLDFIGKYNNWDKVDPAELFSCSTEKKEA 91
Query: 91 TPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRH----QININSPKTVWRA 146
PKLK+P FLA E C++LVLWLDCDKEGENICFEV+ AV+ +++IN+
Sbjct: 92 VPKLKIPYFLAKEGAHCDYLVLWLDCDKEGENICFEVINAVQQGMHRKLHINA------T 145
Query: 147 RFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDAS 206
RFSAIT+KDIK+A+ NL+KPN EA+SVDARQELDLRIGCAFTRYQTKFFQGKYGDLD S
Sbjct: 146 RFSAITEKDIKSALANLIKPNENEAKSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDVS 205
Query: 207 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL-NLNGVAVSVTWSRGHIFDKSTC 265
LISYGPCQTPTLGFCV+RHD+I+TFKP+PYW+L +T+ + +G + ++WSR FDK
Sbjct: 206 LISYGPCQTPTLGFCVQRHDEIQTFKPDPYWVLQVTVKSPDGQDIVLSWSRVRSFDKEVA 265
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
++F V++ TVV +QS+ K K++P ALNTVELMRVASSGLGMGP HAMQIAERLYT
Sbjct: 266 SMFLSHVKEYDQATVVSIQSTEKCKSRPIALNTVELMRVASSGLGMGPQHAMQIAERLYT 325
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPI 385
QGY+SYPRTETT YPENFDL++ L+QQ++S +WG+ VR++++ GI++P+KG D GDHPPI
Sbjct: 326 QGYISYPRTETTSYPENFDLLSTLKQQQNSSEWGEEVRKIIATGINRPKKGHDAGDHPPI 385
Query: 386 TPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHP 445
TP K ATR +LDGD WRLYDYI RHFI TL D Y KF + E+FT LL P
Sbjct: 386 TPMKHATRNELDGDLWRLYDYITRHFIATLARDCRYLSTTVKFEIGMEIFTATGHSLLSP 445
Query: 446 GFTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGT 504
G+T ++TW A+ N+++P F + + IQ K+VE T PPDYLTE+ELISLMEKHGIGT
Sbjct: 446 GYTSILTWQALGNNDTLPKFTSDEKVNIQEAKLVECYTQPPDYLTEAELISLMEKHGIGT 505
Query: 505 DASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
DASIPVHINNIC RNYVTV +GR+L+PTSLGIVLVHGYQKID ELV PTMRSA Q
Sbjct: 506 DASIPVHINNICIRNYVTVAAGRKLIPTSLGIVLVHGYQKIDPELVLPTMRSAVEEQ 562
>gi|242006813|ref|XP_002424239.1| DNA topoisomerase 3-beta, putative [Pediculus humanus corporis]
gi|212507608|gb|EEB11501.1| DNA topoisomerase 3-beta, putative [Pediculus humanus corporis]
Length = 852
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/535 (66%), Positives = 418/535 (78%), Gaps = 4/535 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREA 90
NGACSVHEWVG + V F+MTSVCGHIM L+F+ KYNNWDKVDP+EL SCPTEK+EA
Sbjct: 32 FNGACSVHEWVGTFRMEPVTFRMTSVCGHIMTLEFSGKYNNWDKVDPVELLSCPTEKKEA 91
Query: 91 TPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQI--NINSPKTVWRARF 148
KLK+P FL+ EA+ C++L+LWLDCDKEGENICFEV+ AV+H + ++ V+RA+F
Sbjct: 92 NSKLKMPYFLSQEARGCDYLILWLDCDKEGENICFEVIHAVQHSLKADVRRGDVVYRAKF 151
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
SAIT+KDIKAA NL PN EARSVDARQELDLR+GCAFTR+QTKFF KYGDLDA+LI
Sbjct: 152 SAITEKDIKAAFANLGVPNENEARSVDARQELDLRVGCAFTRFQTKFFHDKYGDLDAALI 211
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNL-NGVAVSVTWSRGHIFDKSTCNV 267
SYGPCQ PTLGFCV+RHD+I+TFKPEPYW+L +++ +G ++ W R F+K +
Sbjct: 212 SYGPCQIPTLGFCVQRHDEIQTFKPEPYWVLQMSVKTESGQEATLEWERVRCFEKEVALM 271
Query: 268 FFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQG 327
F V++ K V V S + +KP ALNTVELMR ASSGLGMGPHHAMQIAERLYTQG
Sbjct: 272 FLSQVKEFKEAKVSSVTSKQMTNSKPLALNTVELMRTASSGLGMGPHHAMQIAERLYTQG 331
Query: 328 YVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITP 387
Y+SYPRTETTQYPENFD + VLRQQ+SS +WG VRE+L+ GISKPRKGKDVGDHPPITP
Sbjct: 332 YISYPRTETTQYPENFDFIGVLRQQQSSSEWGSFVREILNEGISKPRKGKDVGDHPPITP 391
Query: 388 TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
KLA R D ++W+LYDYIVRHF+ T+ G Y V F +A E F + K LL PG+
Sbjct: 392 MKLAKRNDFDAESWKLYDYIVRHFLATVSGPCKYLHTVVTFKIASETFKITGKTLLEPGY 451
Query: 448 TGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDA 506
T +M W A KNE++P+F + I VK++E +TTPP Y+TE+ELI+ MEKHGIGTDA
Sbjct: 452 TAIMPWEAFGKNETLPNFTVDATVTINDVKLIECQTTPPGYMTEAELITQMEKHGIGTDA 511
Query: 507 SIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
SIPVHINNICQRNYVTV SGRRLVPTSLGIVLVHGYQKID ELV PTMRSA Q
Sbjct: 512 SIPVHINNICQRNYVTVESGRRLVPTSLGIVLVHGYQKIDPELVLPTMRSAVEEQ 566
>gi|291227018|ref|XP_002733487.1| PREDICTED: topoisomerase (DNA) III beta-like [Saccoglossus
kowalevskii]
Length = 3134
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/542 (64%), Positives = 415/542 (76%), Gaps = 5/542 (0%)
Query: 25 LTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCP 84
L + NGACSVHE+ G G+ FKMTSVCGH+MGLDF YNNWDKVDP ELFS P
Sbjct: 26 LNSRKGFNGACSVHEYTGKFQGEPARFKMTSVCGHVMGLDFDGSYNNWDKVDPAELFSAP 85
Query: 85 TEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQIN--INSPKT 142
+ EA KL++PAFL+ E+K C++L+LWLDCDKEGENICFEV++ V+ +N +T
Sbjct: 86 VRRIEAQEKLRMPAFLSTESKGCDYLILWLDCDKEGENICFEVIDFVQPVMNRPYGREQT 145
Query: 143 VWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD 202
V+RA+FSAITDKDIKAAM LV+P+ +A SVDARQ+LDLRIGCAFTRYQTKFFQGKY D
Sbjct: 146 VFRAKFSAITDKDIKAAMNKLVEPDKNQALSVDARQQLDLRIGCAFTRYQTKFFQGKYAD 205
Query: 203 LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLN-LNGVAVSVTWSRGHIFD 261
LD++LISYGPCQTPTLGFCV+RHDKI++FKPE YW+L ++ N S+ W R +FD
Sbjct: 206 LDSTLISYGPCQTPTLGFCVDRHDKIQSFKPETYWVLQTQVSGYNNKTFSLDWERVRLFD 265
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
K +F V+ VV++ KSK +PQALNTVELMRVASSGLGMGPHHAMQIAE
Sbjct: 266 KEVAQMFINIVKAANEAEVVNISQKEKSKQRPQALNTVELMRVASSGLGMGPHHAMQIAE 325
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD 381
RLY QGY+SYPRTET+QYPE+FDL LRQQ SS DWG VR++LS GISKPRKG D GD
Sbjct: 326 RLYIQGYISYPRTETSQYPESFDLRGTLRQQASSSDWGSEVRQLLSEGISKPRKGNDAGD 385
Query: 382 HPPITPTKLATRTQL-DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
HPPITP K A+ ++L GD WRLYDYI RHFI T+ + Y Q KF++ E F++ K
Sbjct: 386 HPPITPMKGASESELGGGDNWRLYDYITRHFIATISPECKYLQTTVKFTIGTESFSLTGK 445
Query: 441 YLLHPGFTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
L+ GFT VM W A+ +E +P F GD I+ VK+ ER+TTPPDYLTESELI+LMEK
Sbjct: 446 TLIDAGFTKVMPWQAIGADEKLPQFNKGDKCAIKEVKLTERQTTPPDYLTESELITLMEK 505
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYR 559
HGIGTDASIPVHINNICQRNYV+V SGRRL+PT+LGIVLVHGYQKID +L P+MRSA
Sbjct: 506 HGIGTDASIPVHINNICQRNYVSVGSGRRLIPTTLGIVLVHGYQKIDPDLSLPSMRSAVE 565
Query: 560 VQ 561
Q
Sbjct: 566 EQ 567
>gi|357611732|gb|EHJ67631.1| putative prokaryotic DNA topoisomerase [Danaus plexippus]
Length = 848
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/534 (65%), Positives = 420/534 (78%), Gaps = 4/534 (0%)
Query: 32 NGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREAT 91
N AC+VHEW G + V FKMTSVCGH+M LDFT KYNNWDKVDP+ELF CPTEK+EA
Sbjct: 33 NSACAVHEWTGTFKNEPVKFKMTSVCGHVMSLDFTGKYNNWDKVDPVELFICPTEKKEAM 92
Query: 92 PKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQI--NINSPKTVWRARFS 149
P+L++PAFLA EA+ C++L+LWLDCDKEGENICFEVM V++ + ++ SP +RARFS
Sbjct: 93 PRLRIPAFLAQEARGCDYLILWLDCDKEGENICFEVMSCVQNYMKGDVYSPAVTFRARFS 152
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
AITDKDIK AM NLV+PN E+RSVDARQELDLRIGCAFTR+QTK+FQG+YGDLDASLIS
Sbjct: 153 AITDKDIKTAMMNLVRPNESESRSVDARQELDLRIGCAFTRFQTKYFQGRYGDLDASLIS 212
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCNVF 268
YGPCQTPTLGFCV+RHD I+TFKPE YW+L +T + + G + + W R F+K N+F
Sbjct: 213 YGPCQTPTLGFCVQRHDDIQTFKPETYWVLRVTASTSEGRELPLEWKRVRSFEKDIANMF 272
Query: 269 FKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGY 328
+++ K TVV++Q+ K K++P ALNTVELMRVAS+GLGMGPHHAMQIAERLYTQGY
Sbjct: 273 LVGIKEFKEATVVNIQAKEKIKSRPTALNTVELMRVASAGLGMGPHHAMQIAERLYTQGY 332
Query: 329 VSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPT 388
+SYPRTETT Y ENFDL+ LRQQ++S WG VR +L+NGI+KP+KG D GDHPPITP
Sbjct: 333 ISYPRTETTSYGENFDLIGSLRQQQNSNKWGSEVRALLANGINKPKKGHDAGDHPPITPM 392
Query: 389 KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
K A+ ++L+GD WR+YDYI RHFI TL D Y FSV E F L+ G+T
Sbjct: 393 KPASESELEGDMWRIYDYITRHFIATLSRDCRYLSTTLTFSVGSETFYYTGNTLVDAGYT 452
Query: 449 GVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDAS 507
+M W A K+E +P K +++ ++VE +T+PPDYLTESE+I+LMEKHGIGTDAS
Sbjct: 453 EIMHWQAFGKDEFVPVLKVDEVLRAHDHRLVECQTSPPDYLTESEVITLMEKHGIGTDAS 512
Query: 508 IPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
IPVHINNICQRNYV+V SGRRLVPTSLG+VLVHGYQKID ELV PTMRSA Q
Sbjct: 513 IPVHINNICQRNYVSVGSGRRLVPTSLGVVLVHGYQKIDPELVLPTMRSAVEEQ 566
>gi|328697671|ref|XP_003240406.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 2 [Acyrthosiphon
pisum]
Length = 853
Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/556 (61%), Positives = 427/556 (76%), Gaps = 12/556 (2%)
Query: 18 RPSLISLLTPL---------QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSK 68
+PSL S L + + MN AC VHEW G LFG+ V+FKMTSVCGH+M LDF SK
Sbjct: 10 KPSLASSLASILSNGRSNSRKSMNSACPVHEWSGTLFGEPVIFKMTSVCGHVMTLDFNSK 69
Query: 69 YNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVM 128
+NNWDKVDP ELFSCPTEK+EA+PKL++PA LA+EA+ +FL+LWLDCDKEGENICFEV+
Sbjct: 70 FNNWDKVDPEELFSCPTEKKEASPKLRIPAMLASEARGVDFLILWLDCDKEGENICFEVI 129
Query: 129 EAVRHQININSP-KTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCA 187
+AV+ + + +WRA+FSAIT KDIK AM L PN EA SVDARQELDLRIGC+
Sbjct: 130 DAVKSSMKRSGDVNRIWRAKFSAITAKDIKGAMERLDFPNRNEAMSVDARQELDLRIGCS 189
Query: 188 FTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL-NLN 246
FTR+QTK+FQGKYGDLD+SLISYGPCQTPTLGFCV+RHD+IR FKPEPYW++ +T+ + +
Sbjct: 190 FTRFQTKYFQGKYGDLDSSLISYGPCQTPTLGFCVQRHDEIRRFKPEPYWVIQVTIQSKD 249
Query: 247 GVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVAS 306
G V + W +G F++ N +A++K++ TVV + KSK +P ALN+VELMR AS
Sbjct: 250 GQDVVLNWEKGRCFERDASNSLLQALKKQQIATVVSITQQEKSKQRPLALNSVELMRAAS 309
Query: 307 SGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVL 366
+GLGMGPHHAMQ+AERLY QGY+SYPRTET+ Y +NF+L+ +R + S +WG +R+VL
Sbjct: 310 TGLGMGPHHAMQLAERLYIQGYISYPRTETSHYSDNFELLPAMRTLQKSNEWGQEIRQVL 369
Query: 367 SNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVA 426
+NG+++PR GKD GDHPPITPT LA+R LDGD+W+LYD+IVRHFI T+ D Y K
Sbjct: 370 NNGLTRPRNGKDCGDHPPITPTMLASRNDLDGDSWKLYDFIVRHFIATISKDCRYYSKTV 429
Query: 427 KFSVADEMFTMEAKYLLHPGFTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPP 485
F + EMFT + L+ GFT + W A+ KNE +F+ + + I+ ++ + T+PP
Sbjct: 430 TFKIGSEMFTYNWRTLIDAGFTAITPWKALPKNELAVNFERDEKLNIKDARLTDHMTSPP 489
Query: 486 DYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKI 545
YLTESELIS+MEKHGIGTDASIPVHINNI QRNYVTV +GRRLVPT+LGIVLVHGYQKI
Sbjct: 490 GYLTESELISMMEKHGIGTDASIPVHINNISQRNYVTVATGRRLVPTNLGIVLVHGYQKI 549
Query: 546 DRELVEPTMRSAYRVQ 561
D++LVEPTMRS Q
Sbjct: 550 DKQLVEPTMRSTIEDQ 565
>gi|193591899|ref|XP_001951574.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 1 [Acyrthosiphon
pisum]
Length = 854
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/557 (61%), Positives = 425/557 (76%), Gaps = 13/557 (2%)
Query: 18 RPSLISLLTPL---------QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSK 68
+PSL S L + + MN AC VHEW G LFG+ V+FKMTSVCGH+M LDF SK
Sbjct: 10 KPSLASSLASILSNGRSNSRKSMNSACPVHEWSGTLFGEPVIFKMTSVCGHVMTLDFNSK 69
Query: 69 YNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVM 128
+NNWDKVDP ELFSCPTEK+EA+PKL++PA LA+EA+ +FL+LWLDCDKEGENICFEV+
Sbjct: 70 FNNWDKVDPEELFSCPTEKKEASPKLRIPAMLASEARGVDFLILWLDCDKEGENICFEVI 129
Query: 129 EAVRHQININSP-KTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCA 187
+AV+ + + +WRA+FSAIT KDIK AM L PN EA SVDARQELDLRIGC+
Sbjct: 130 DAVKSSMKRSGDVNRIWRAKFSAITAKDIKGAMERLDFPNRNEAMSVDARQELDLRIGCS 189
Query: 188 FTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLN--L 245
FTR+QTK+FQGKYGDLD+SLISYGPCQTPTLGFCV+RHD+IR FKPEPYW++ + L
Sbjct: 190 FTRFQTKYFQGKYGDLDSSLISYGPCQTPTLGFCVQRHDEIRRFKPEPYWVIQVRKYKYL 249
Query: 246 NGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVA 305
+G V + W +G F++ N +A++K++ TVV + KSK +P ALN+VELMR A
Sbjct: 250 DGQDVVLNWEKGRCFERDASNSLLQALKKQQIATVVSITQQEKSKQRPLALNSVELMRAA 309
Query: 306 SSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREV 365
S+GLGMGPHHAMQ+AERLY QGY+SYPRTET+ Y +NF+L+ +R + S +WG +R+V
Sbjct: 310 STGLGMGPHHAMQLAERLYIQGYISYPRTETSHYSDNFELLPAMRTLQKSNEWGQEIRQV 369
Query: 366 LSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKV 425
L+NG+++PR GKD GDHPPITPT LA+R LDGD+W+LYD+IVRHFI T+ D Y K
Sbjct: 370 LNNGLTRPRNGKDCGDHPPITPTMLASRNDLDGDSWKLYDFIVRHFIATISKDCRYYSKT 429
Query: 426 AKFSVADEMFTMEAKYLLHPGFTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTP 484
F + EMFT + L+ GFT + W A+ KNE +F+ + + I+ ++ + T+P
Sbjct: 430 VTFKIGSEMFTYNWRTLIDAGFTAITPWKALPKNELAVNFERDEKLNIKDARLTDHMTSP 489
Query: 485 PDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQK 544
P YLTESELIS+MEKHGIGTDASIPVHINNI QRNYVTV +GRRLVPT+LGIVLVHGYQK
Sbjct: 490 PGYLTESELISMMEKHGIGTDASIPVHINNISQRNYVTVATGRRLVPTNLGIVLVHGYQK 549
Query: 545 IDRELVEPTMRSAYRVQ 561
ID++LVEPTMRS Q
Sbjct: 550 IDKQLVEPTMRSTIEDQ 566
>gi|157129809|ref|XP_001655482.1| prokaryotic DNA topoisomerase [Aedes aegypti]
gi|108872077|gb|EAT36302.1| AAEL011603-PA [Aedes aegypti]
Length = 856
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/533 (64%), Positives = 414/533 (77%), Gaps = 5/533 (0%)
Query: 32 NGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREAT 91
N ACSVHEW G G+ V FKMTSVCGHIMGL+F K+N+WDKVDP ELFSCPTEK+E+T
Sbjct: 33 NNACSVHEWFGNFRGEQVKFKMTSVCGHIMGLEFVGKFNSWDKVDPAELFSCPTEKKEST 92
Query: 92 PKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQI-NINSPKTVWRARFSA 150
P L++PAFL+ EAK CE+L+LWLDCDKEGENICFEVM AV + N+ S + +RA+FSA
Sbjct: 93 PNLRMPAFLSQEAKGCEYLILWLDCDKEGENICFEVMAAVSGVMRNVFSNRVTYRAKFSA 152
Query: 151 ITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISY 210
ITDKDIK AM NL+ PN EA+SVDARQELDLRIGCAFTR+QTKFFQGKY DLDASLISY
Sbjct: 153 ITDKDIKYAMDNLIHPNENEAKSVDARQELDLRIGCAFTRFQTKFFQGKYADLDASLISY 212
Query: 211 GPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFK 270
GPCQTPTLGFCV+RHD+I+TFKPE +W + +T+ N + + WSR IF+K +F
Sbjct: 213 GPCQTPTLGFCVQRHDEIQTFKPESFWYVQVTVGENP-EIKLEWSRVRIFEKEVACMFLN 271
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVS 330
V+ +K V V S +++PQALNTVELMR AS+GLG+GPH AMQIAE+LYT+GY+S
Sbjct: 272 KVKDQKEALVESVTSKETFRSRPQALNTVELMRAASAGLGIGPHTAMQIAEKLYTRGYIS 331
Query: 331 YPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKL 390
YPRTETTQYP NFDLV V++ + S ++G+ R++L + +S PRKG D GDHPPITP KL
Sbjct: 332 YPRTETTQYPTNFDLVGVVKLLQPSSEFGEEARDILRD-MSSPRKGNDAGDHPPITPMKL 390
Query: 391 ATRTQLD-GDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTG 449
A+R +LD GD WRLYDYI RHF+GT+ DL Y KF + +E+FT + L+ PG+T
Sbjct: 391 ASRNELDGGDTWRLYDYICRHFLGTISRDLKYRLTTTKFKINNELFTNTSSVLIDPGYTK 450
Query: 450 VMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASI 508
VMTW A KNE I F + + I V++VE +T PPDYLTESELISLMEKHGIGTDASI
Sbjct: 451 VMTWQAFNKNEVITPFTVNEKVKINDVRLVESQTGPPDYLTESELISLMEKHGIGTDASI 510
Query: 509 PVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
PVHINNICQRNYV + GR L PT+LGIVLVHGY+KID ELV PTMRSA Q
Sbjct: 511 PVHINNICQRNYVAIGGGRTLTPTNLGIVLVHGYRKIDPELVLPTMRSAVEQQ 563
>gi|405959918|gb|EKC25894.1| DNA topoisomerase 3-beta-1 [Crassostrea gigas]
Length = 851
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/533 (64%), Positives = 409/533 (76%), Gaps = 7/533 (1%)
Query: 32 NGACSVHEWVG--PLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
NGACS+HE+ G P G+ V +KMTSVCGH+ GLDFT KYN+WD+VDP+ELF+ PT K+E
Sbjct: 33 NGACSIHEYKGKFPPTGESVSYKMTSVCGHVFGLDFTGKYNSWDRVDPVELFTAPTLKKE 92
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
AT KL++P FL EA+ ++LVLWLDCDKEGENICFEV++ + +N S + V+RA+FS
Sbjct: 93 ATEKLRMPNFLEKEARGVDYLVLWLDCDKEGENICFEVIDCAKPSMNRFSDQCVYRAKFS 152
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
AITDKDIK+AM L+ PN EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD++LIS
Sbjct: 153 AITDKDIKSAMTKLIAPNKNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSTLIS 212
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFF 269
YGPCQTPTLG CV+RHDKI++FKPEPYWL G V + W R +FDK +F
Sbjct: 213 YGPCQTPTLGLCVDRHDKIQSFKPEPYWL----ALPEGRTVDIDWDRIRVFDKEVAQMFV 268
Query: 270 KAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV 329
++ V+ V KSK +PQALNTVE++R ASSGLGMGP HAMQ+AERLY QGY+
Sbjct: 269 NMIKSSDSARVLKVTQDVKSKARPQALNTVEMLRAASSGLGMGPQHAMQMAERLYIQGYI 328
Query: 330 SYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTK 389
SYPRTETTQYPENFDLV LRQQ SS WGD+V+ +L GI KP+KG DVGDHPPITP +
Sbjct: 329 SYPRTETTQYPENFDLVGTLRQQASSSMWGDYVQNLLREGIQKPKKGTDVGDHPPITPMR 388
Query: 390 LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTG 449
AT +L DAWRLYD+I RHFIGT+ D Y Q A F + E FT + PGFT
Sbjct: 389 PATEAELGHDAWRLYDFITRHFIGTISPDCKYLQTTAFFEIGAERFTCTGYRVTDPGFTA 448
Query: 450 VMTWSAMKNE-SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASI 508
VM+W ++++E ++P+FK I VKMVE+ T+PPDYLTESELISLMEKHGIGTDASI
Sbjct: 449 VMSWKSLEDEWTLPEFKKDMDYNITEVKMVEKHTSPPDYLTESELISLMEKHGIGTDASI 508
Query: 509 PVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
PVHINNIC+RNYVTVTSGRRL PT LGIVLVHGYQKID ELV PTMRSA Q
Sbjct: 509 PVHINNICERNYVTVTSGRRLKPTPLGIVLVHGYQKIDIELVLPTMRSAVEKQ 561
>gi|241721971|ref|XP_002404156.1| topoisomerase I, putative [Ixodes scapularis]
gi|215505336|gb|EEC14830.1| topoisomerase I, putative [Ixodes scapularis]
Length = 857
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/537 (62%), Positives = 414/537 (77%), Gaps = 9/537 (1%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREA 90
++ AC+V+E++G + FKMTSVCGH+M DFT KYN+WD+VDP ELFS PTEK+EA
Sbjct: 32 ISSACTVYEYMGKFKNEPARFKMTSVCGHVMTTDFTGKYNSWDRVDPAELFSAPTEKKEA 91
Query: 91 TPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKT-----VWR 145
PKL+LP FL E + C++LVLWLDCDKEGENICFEV+ V+ + P T ++R
Sbjct: 92 NPKLQLPRFLEKEGQGCDYLVLWLDCDKEGENICFEVINIVKPVLK--RPATYGQQFIFR 149
Query: 146 ARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDA 205
A+FSAITDKDIKAAM LV+PN EARSVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+
Sbjct: 150 AKFSAITDKDIKAAMNMLVEPNENEARSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDS 209
Query: 206 SLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTC 265
S IS+GPCQTPTLGFCV+RHDKI++FKPE YW+L + ++ N ++ W RG IFD+
Sbjct: 210 SFISFGPCQTPTLGFCVDRHDKIQSFKPEAYWVLQVKVS-NEQTFTLDWERGRIFDREVA 268
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
VF + K + DV KSK +P ALNTVELMR+ASSGLGMGPHHAMQ+AERLY
Sbjct: 269 MVFLTQISNCKEALITDVTQKEKSKPRPVALNTVELMRIASSGLGMGPHHAMQVAERLYI 328
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPI 385
QGY+SYPRTETT YPENFDL L Q + PD V+E+LS GI++P+KG D GDHPPI
Sbjct: 329 QGYISYPRTETTSYPENFDLRGTLHQIQRVPDLSADVQELLSKGINRPKKGHDAGDHPPI 388
Query: 386 TPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHP 445
TPTK A+R +LDGDAWRLYDYI RHF+ TL D+ + Q A F+V +E F++ K +++P
Sbjct: 389 TPTKDASRGELDGDAWRLYDYIARHFVATLSEDMKFLQATASFTVGEERFSLTGKSVINP 448
Query: 446 GFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGT 504
GFT M+W A+ E++P K G P+ +K+ E+KT+PP YLTESELISLM+KHGIGT
Sbjct: 449 GFTKFMSWHAVTPEEALPQLKAGTTCPVVQMKLSEQKTSPPGYLTESELISLMDKHGIGT 508
Query: 505 DASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
DASIPVHINN+CQRNYVTV SGRRL+PT+LGIVLVHGYQKID +L+ PTMR+A Q
Sbjct: 509 DASIPVHINNVCQRNYVTVDSGRRLIPTNLGIVLVHGYQKIDTDLILPTMRAAVEQQ 565
>gi|156393418|ref|XP_001636325.1| predicted protein [Nematostella vectensis]
gi|156223427|gb|EDO44262.1| predicted protein [Nematostella vectensis]
Length = 856
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/534 (62%), Positives = 408/534 (76%), Gaps = 3/534 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREA 90
+NGACSVHE+ G + V FKMTSVCGH+M LDF KYNNWD VDPLELF+ T K+EA
Sbjct: 32 LNGACSVHEYSGSFRNEPVKFKMTSVCGHVMSLDFHHKYNNWDAVDPLELFTATTLKKEA 91
Query: 91 TPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININ-SPKTVWRARFS 149
T KL++P FL++EAK ++LVLWLDCDKEGENICFEVME VR+ +N +TV+RA+FS
Sbjct: 92 TEKLQMPKFLSHEAKGVDYLVLWLDCDKEGENICFEVMECVRNSMNKRPGEQTVFRAKFS 151
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
AIT+KDI AM L +PN E+ SVDARQELDLRIGCAFTR+QTK+FQ KYGDLD++LIS
Sbjct: 152 AITEKDIAGAMQKLGQPNKNESLSVDARQELDLRIGCAFTRFQTKYFQNKYGDLDSALIS 211
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLD-LTLNLNGVAVSVTWSRGHIFDKSTCNVF 268
YGPCQTPTLGFCVERHD+I++FKPE YW++ ++ +G +V + W R +FDK VF
Sbjct: 212 YGPCQTPTLGFCVERHDQIQSFKPEAYWVIKPKVVHSSGQSVVLDWDRVRVFDKEIALVF 271
Query: 269 FKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGY 328
K +++ + V + + K+K +PQALNTVE++R+ASSGLGMGP H MQIAERLYTQGY
Sbjct: 272 QKTIKESSNAQVTCISKTQKTKQRPQALNTVEMLRLASSGLGMGPQHTMQIAERLYTQGY 331
Query: 329 VSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPT 388
+SYPRTETT YPENFDL L+QQ S WG HVRE+L ++KPRKG D GDHPPITP
Sbjct: 332 ISYPRTETTHYPENFDLKGALKQQSGSAMWGSHVRELLDGAMTKPRKGHDAGDHPPITPM 391
Query: 389 KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
+ A+ ++L GD WRLYD+I RHF+ TL D Y Q KF + E F+ K + PGFT
Sbjct: 392 RCASESELGGDPWRLYDFITRHFLATLSPDCKYLQTTVKFKIGKEAFSFTGKAVTDPGFT 451
Query: 449 GVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDAS 507
VMTW A+ +E +P F GD+ + VK+ ER+T PPD+LTESELI+LMEKHGIGTDAS
Sbjct: 452 SVMTWQAISDDERMPPFNKGDICQVAEVKLDERQTLPPDFLTESELITLMEKHGIGTDAS 511
Query: 508 IPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
I VHINNIC+RNYV + SGR+L PTSLGIVLVHGYQKID ELV PTMRSA Q
Sbjct: 512 ISVHINNICERNYVQIQSGRKLAPTSLGIVLVHGYQKIDPELVLPTMRSAVEEQ 565
>gi|170047094|ref|XP_001851071.1| DNA topoisomerase 3-beta [Culex quinquefasciatus]
gi|167869634|gb|EDS33017.1| DNA topoisomerase 3-beta [Culex quinquefasciatus]
Length = 855
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/533 (63%), Positives = 409/533 (76%), Gaps = 5/533 (0%)
Query: 32 NGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREAT 91
N ACSVHEWVG G FKMTSVCGHIMGL+F KYN+WDKVDP +LF+C TEK+E+T
Sbjct: 33 NNACSVHEWVGNFHGQQTRFKMTSVCGHIMGLEFVGKYNSWDKVDPADLFTCATEKKEST 92
Query: 92 PKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQI-NINSPKTVWRARFSA 150
P L++PAFL++EAK C++LVLWLDCDKEGENICFEVM +V + I N+ S + +RA+FSA
Sbjct: 93 PNLRMPAFLSHEAKGCDYLVLWLDCDKEGENICFEVMASVANTIPNVYSNRVTYRAKFSA 152
Query: 151 ITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISY 210
IT+KDIK AM NL++PN EA+SVDARQELDLRIGCAFTR+QTKFFQGKY DLDASLISY
Sbjct: 153 ITEKDIKYAMENLIQPNENEAKSVDARQELDLRIGCAFTRFQTKFFQGKYADLDASLISY 212
Query: 211 GPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFK 270
GPCQTPTL CV+RHD+I+TFKPE +W + +T+ N + + WSR IF+K +F
Sbjct: 213 GPCQTPTLTLCVQRHDEIQTFKPESFWYVQVTVGENP-EIKLDWSRVRIFEKEVACMFLN 271
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVS 330
V+ K V +V S K +PQALNTVELMR AS+GLG+GPH AMQIAE+LYT+GY+S
Sbjct: 272 KVKDHKEAIVENVSSKEAFKGRPQALNTVELMRAASAGLGIGPHSAMQIAEKLYTRGYIS 331
Query: 331 YPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKL 390
YPRTETTQYP NFDLV V++ + S ++GD + +L + ++ PRKG D GDHPPITP KL
Sbjct: 332 YPRTETTQYPTNFDLVGVVKLLQHSSEFGDEAKSILHD-MNSPRKGNDAGDHPPITPMKL 390
Query: 391 ATRTQLD-GDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTG 449
A+R +LD GD +R+YDYI RHF+ T+ DL Y Q KF + E F+ + L+ PG+T
Sbjct: 391 ASRNELDGGDTFRVYDYICRHFLATVSRDLKYRQTSTKFKIGSEHFSNTSNVLIDPGYTK 450
Query: 450 VMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASI 508
VMTW A KNE + F + + I V++VE +T PPDYLTESELISLMEKHGIGTDASI
Sbjct: 451 VMTWQAFAKNELVVPFIVNEKVKINDVRLVESQTGPPDYLTESELISLMEKHGIGTDASI 510
Query: 509 PVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
PVHINNICQRNYV + GR L PT+LGIVLVHGYQKID ELV PTMRSA Q
Sbjct: 511 PVHINNICQRNYVAIGGGRTLTPTNLGIVLVHGYQKIDPELVLPTMRSAVEQQ 563
>gi|148228452|ref|NP_001082554.1| topoisomerase (DNA) III beta [Xenopus laevis]
gi|28422192|gb|AAH46848.1| MGC53016 protein [Xenopus laevis]
Length = 858
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/536 (62%), Positives = 402/536 (75%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVHE+ G G V FKMTSVCGH+M LDF KYNNWDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHEYTGSFMGQNVRFKMTSVCGHVMSLDFIGKYNNWDKVDPAELFSKAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++A+ +N +TV+RA+
Sbjct: 92 ANPKLNMVKFLQVEGRSCDYVVLWLDCDKEGENICFEVLDAIHPVMNKAHGGERTVYRAK 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +PN EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDTDILNAMNRLGEPNKNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L + ++ +S+ W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQVKVSHGQEHPLSLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + K V V K+K +PQALNTVE++RVASS LGMGP H MQIAERLYTQ
Sbjct: 272 MFINITKTAKEAQVESVSKKEKAKQRPQALNTVEMLRVASSALGMGPQHTMQIAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL L+QQ ++P W D V+ +L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGTLKQQANNPFWADTVKTLLAEGINRPRKGADAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + AT ++L GDAWRLY+YI RHFI T+ D Y Q FSV EMFT K ++ PG
Sbjct: 392 PMRSATESELGGDAWRLYEYITRHFIATISHDCKYLQTSIAFSVGPEMFTTTCKEVISPG 451
Query: 447 FTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W + K ES + GD + +K+VE++T PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQGIPKEESFESCQRGDKFSVDEMKLVEKQTCPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINN+CQRNYVTV SGRRL PTSLGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNVCQRNYVTVESGRRLKPTSLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>gi|195133228|ref|XP_002011041.1| GI16324 [Drosophila mojavensis]
gi|193907016|gb|EDW05883.1| GI16324 [Drosophila mojavensis]
Length = 858
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/550 (62%), Positives = 408/550 (74%), Gaps = 14/550 (2%)
Query: 18 RPSLISLLTPL--------QRMNGACSVHEWVGPLFGD-LVLFKMTSVCGHIMGLDFTSK 68
+PSL + L + +R N CS HEW GP + V F+MTSVCGH+M LDF SK
Sbjct: 10 KPSLAASLAGILSNGRCTAKRGNNGCSTHEWTGPFRNEGNVHFRMTSVCGHVMSLDFISK 69
Query: 69 YNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVM 128
Y +WDKVDP++LF CPTEK+E PK ++ +FLA+EA+ C++LVLWLDCDKEGENICFEVM
Sbjct: 70 YTSWDKVDPVQLFDCPTEKKECNPKQQMRSFLAHEARGCDYLVLWLDCDKEGENICFEVM 129
Query: 129 EAVRHQI-NINSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCA 187
+AV+H I N+ S +RA FSAITDKDIK AM +L PN EA+SVDARQELDLRIGCA
Sbjct: 130 DAVQHVIHNVYSTFVTYRAHFSAITDKDIKGAMESLGHPNKNEAKSVDARQELDLRIGCA 189
Query: 188 FTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNG 247
FTR+QTKFFQG+YGDLD+SLISYGPCQTPTLGFCV+RHD I+ FKPE +W L L
Sbjct: 190 FTRFQTKFFQGRYGDLDSSLISYGPCQTPTLGFCVKRHDDIQLFKPETFWYLQLVAGQP- 248
Query: 248 VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASS 307
V++ W+RG +F K+ + V++ K TV V S K+KPQALNTVELMR+ SS
Sbjct: 249 -EVTLEWARGRVFKKNIAIMLLNRVKEHKEATVESVSSKESFKSKPQALNTVELMRICSS 307
Query: 308 GLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLS 367
GLG+GP AMQIAERLYTQGY+SYPRTET QYPENFDL AVLR + S D+GD R + S
Sbjct: 308 GLGIGPFQAMQIAERLYTQGYISYPRTETNQYPENFDLHAVLRLLQPSGDFGDEARAI-S 366
Query: 368 NGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAK 427
+ PRKGKD GDHPPITP KL R D D WR+Y++I RHF+GT+ DL Y AK
Sbjct: 367 SDFQTPRKGKDAGDHPPITPMKLGHRNDFDRDTWRVYEFICRHFMGTISRDLKYRTTTAK 426
Query: 428 FSVADEMFTMEAKYLLHPGFTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPD 486
V E FT A LL GFT VMTW A K+E++P F G +PI V++ E +T PPD
Sbjct: 427 LKVGLETFTCTANVLLDAGFTKVMTWQAFGKDEAMPPFVQGTQVPITDVRLAESQTGPPD 486
Query: 487 YLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKID 546
YLTE+ELI+LME+HGIGTDASIPVHINNICQRNYV + +GR+L+PT+LGIVLVHGYQKID
Sbjct: 487 YLTEAELITLMEQHGIGTDASIPVHINNICQRNYVKIETGRKLIPTTLGIVLVHGYQKID 546
Query: 547 RELVEPTMRS 556
ELV PTMRS
Sbjct: 547 PELVLPTMRS 556
>gi|402883653|ref|XP_003905324.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Papio anubis]
gi|402883655|ref|XP_003905325.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Papio anubis]
Length = 862
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/542 (62%), Positives = 404/542 (74%), Gaps = 5/542 (0%)
Query: 25 LTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-C 83
L+ + +NGACSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS
Sbjct: 26 LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQA 85
Query: 84 PTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQIN--INSPK 141
PTEK+EA PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N K
Sbjct: 86 PTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKAYGGEK 145
Query: 142 TVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG 201
TV+RARFS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG
Sbjct: 146 TVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYG 205
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIF 260
DLD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +F
Sbjct: 206 DLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVF 265
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D+ +F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ A
Sbjct: 266 DREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTA 325
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG 380
ERLYTQGY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D G
Sbjct: 326 ERLYTQGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAG 385
Query: 381 DHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
DHPPITP K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E+FT K
Sbjct: 386 DHPPITPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPELFTCSGK 445
Query: 441 YLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
+L PGFT +M W ++ ES+P + GD P+ VKM+E++T+PPDYLTE+ELI+LMEK
Sbjct: 446 TVLSPGFTEIMPWQSVPLEESLPTCQRGDTFPVGEVKMLEKQTSPPDYLTEAELITLMEK 505
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYR 559
HGIGTDASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA
Sbjct: 506 HGIGTDASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVE 565
Query: 560 VQ 561
Q
Sbjct: 566 KQ 567
>gi|297716768|ref|XP_002834672.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Pongo abelii]
gi|297716770|ref|XP_002834673.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 3 [Pongo abelii]
Length = 862
Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/542 (62%), Positives = 404/542 (74%), Gaps = 5/542 (0%)
Query: 25 LTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-C 83
L+ + +NGACSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS
Sbjct: 26 LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQA 85
Query: 84 PTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPK 141
PTEK+EA PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N K
Sbjct: 86 PTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKAHGGEK 145
Query: 142 TVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG 201
TV+RARFS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG
Sbjct: 146 TVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYG 205
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIF 260
DLD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +F
Sbjct: 206 DLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVF 265
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D+ +F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ A
Sbjct: 266 DREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTA 325
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG 380
ERLYTQGY+SYPRTETT YPENFDL LRQQ + P W D V+++L+ GI++PRKG D G
Sbjct: 326 ERLYTQGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKQLLAEGINRPRKGHDAG 385
Query: 381 DHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
DHPPITP K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E+FT K
Sbjct: 386 DHPPITPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPELFTCSGK 445
Query: 441 YLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
+L PGFT +M W ++ ES+P + GD P+ VKM+E++T PPDYLTE+ELI+LMEK
Sbjct: 446 TVLSPGFTEIMPWQSVPLEESLPTCQRGDTFPVGEVKMLEKQTNPPDYLTEAELITLMEK 505
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYR 559
HGIGTDASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA
Sbjct: 506 HGIGTDASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVE 565
Query: 560 VQ 561
Q
Sbjct: 566 KQ 567
>gi|126324756|ref|XP_001363870.1| PREDICTED: DNA topoisomerase 3-beta-1 [Monodelphis domestica]
Length = 862
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/536 (62%), Positives = 404/536 (75%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVHE+ G G V FKMTSVCGH+M LDFT KYN+WD+VDP ELFS PTEK+E
Sbjct: 32 LNGACSVHEYSGSFSGQTVRFKMTSVCGHVMTLDFTGKYNHWDRVDPAELFSKAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N + KTV+RAR
Sbjct: 92 ANPKLSMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKPRGTEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDTDICNAMSRLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + +V + W R +FD+ +
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPELYWVLQAKINPDKDSSVLLDWDRVRVFDREIAH 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F EK V K+K +P ALNTVE++RVASS LGMGP HAMQIAERLYTQ
Sbjct: 272 MFLNITRMEKEAKVEGTSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQIAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W V+++L++ I++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGSLRQQANHPYWAQTVKQLLADSINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + AT +L GDAWRLY+YI RHFI T+ D Y Q F + E FT K LL PG
Sbjct: 392 PMRSATEAELGGDAWRLYEYITRHFIATVSYDCKYLQNTISFQIGPERFTCSGKTLLSPG 451
Query: 447 FTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD P+ VKM+E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSIPPEESLPTCQKGDTFPLSEVKMLEKQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVTVESGRRLRPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>gi|380787141|gb|AFE65446.1| DNA topoisomerase 3-beta-1 [Macaca mulatta]
Length = 862
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/542 (62%), Positives = 404/542 (74%), Gaps = 5/542 (0%)
Query: 25 LTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-C 83
L+ + +NGACSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS
Sbjct: 26 LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQA 85
Query: 84 PTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQIN--INSPK 141
PTEK+EA PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N K
Sbjct: 86 PTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKAYGGEK 145
Query: 142 TVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG 201
TV+RARFS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG
Sbjct: 146 TVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYG 205
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIF 260
DLD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +F
Sbjct: 206 DLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVF 265
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D+ +F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ A
Sbjct: 266 DREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTA 325
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG 380
ERLYTQGY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D G
Sbjct: 326 ERLYTQGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAG 385
Query: 381 DHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
DHPPITP K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E+FT K
Sbjct: 386 DHPPITPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPELFTCSGK 445
Query: 441 YLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
+L PGFT +M W ++ ES+P + GD P+ VKM+E++T+PPDYLTE+ELI+LMEK
Sbjct: 446 TVLSPGFTEIMPWQSVPLEESLPTCQRGDTFPVGEVKMLEKQTSPPDYLTEAELITLMEK 505
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYR 559
HGIGTDASIPVHINNICQRNYV+V SGRRL PT+LGIVLVHGY KID ELV PT+RSA
Sbjct: 506 HGIGTDASIPVHINNICQRNYVSVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVE 565
Query: 560 VQ 561
Q
Sbjct: 566 KQ 567
>gi|4507635|ref|NP_003926.1| DNA topoisomerase 3-beta-1 [Homo sapiens]
gi|6686033|sp|O95985.1|TOP3B_HUMAN RecName: Full=DNA topoisomerase 3-beta-1; AltName: Full=DNA
topoisomerase III beta-1
gi|4768877|gb|AAD29670.1|AF125216_1 DNA topoisomerase III beta [Homo sapiens]
gi|4102879|gb|AAD01614.1| DNA topoisomerase III beta [Homo sapiens]
gi|4321652|gb|AAD15791.1| DNA topoisomerase III beta [Homo sapiens]
gi|47678723|emb|CAG30482.1| TOP3B [Homo sapiens]
gi|109451532|emb|CAK54627.1| TOP3B [synthetic construct]
gi|109452128|emb|CAK54926.1| TOP3B [synthetic construct]
gi|119579891|gb|EAW59487.1| topoisomerase (DNA) III beta, isoform CRA_a [Homo sapiens]
gi|119579892|gb|EAW59488.1| topoisomerase (DNA) III beta, isoform CRA_a [Homo sapiens]
gi|119579894|gb|EAW59490.1| topoisomerase (DNA) III beta, isoform CRA_a [Homo sapiens]
gi|119579895|gb|EAW59491.1| topoisomerase (DNA) III beta, isoform CRA_a [Homo sapiens]
gi|208965626|dbj|BAG72827.1| topoisomerase (DNA) III beta [synthetic construct]
Length = 862
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/542 (62%), Positives = 403/542 (74%), Gaps = 5/542 (0%)
Query: 25 LTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-C 83
L+ + +NGACSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS
Sbjct: 26 LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQA 85
Query: 84 PTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPK 141
PTEK+EA PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N K
Sbjct: 86 PTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKAHGGEK 145
Query: 142 TVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG 201
TV+RARFS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG
Sbjct: 146 TVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYG 205
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIF 260
DLD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +F
Sbjct: 206 DLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVF 265
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D+ +F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ A
Sbjct: 266 DREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTA 325
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG 380
ERLYTQGY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D G
Sbjct: 326 ERLYTQGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAG 385
Query: 381 DHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
DHPPITP K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E+FT K
Sbjct: 386 DHPPITPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPELFTCSGK 445
Query: 441 YLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
+L PGFT VM W ++ ES+P + GD P+ VKM+E++T PPDYLTE+ELI+LMEK
Sbjct: 446 TVLSPGFTEVMPWQSVPLEESLPTCQRGDAFPVGEVKMLEKQTNPPDYLTEAELITLMEK 505
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYR 559
HGIGTDASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA
Sbjct: 506 HGIGTDASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVE 565
Query: 560 VQ 561
Q
Sbjct: 566 KQ 567
>gi|332859251|ref|XP_515006.3| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Pan troglodytes]
gi|332859253|ref|XP_003317172.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Pan troglodytes]
gi|410207778|gb|JAA01108.1| topoisomerase (DNA) III beta [Pan troglodytes]
gi|410256630|gb|JAA16282.1| topoisomerase (DNA) III beta [Pan troglodytes]
gi|410290228|gb|JAA23714.1| topoisomerase (DNA) III beta [Pan troglodytes]
gi|410350957|gb|JAA42082.1| topoisomerase (DNA) III beta [Pan troglodytes]
Length = 862
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/542 (62%), Positives = 403/542 (74%), Gaps = 5/542 (0%)
Query: 25 LTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-C 83
L+ + +NGACSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS
Sbjct: 26 LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQA 85
Query: 84 PTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPK 141
PTEK+EA PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N K
Sbjct: 86 PTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKAHGGEK 145
Query: 142 TVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG 201
TV+RARFS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG
Sbjct: 146 TVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYG 205
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIF 260
DLD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +F
Sbjct: 206 DLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVF 265
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D+ +F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ A
Sbjct: 266 DREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTA 325
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG 380
ERLYTQGY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D G
Sbjct: 326 ERLYTQGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAG 385
Query: 381 DHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
DHPPITP K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E+FT K
Sbjct: 386 DHPPITPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPELFTCSGK 445
Query: 441 YLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
+L PGFT VM W ++ ES+P + GD P+ VKM+E++T PPDYLTE+ELI+LMEK
Sbjct: 446 TVLSPGFTEVMPWQSVPLEESLPTCQRGDAFPVGEVKMLEKQTNPPDYLTEAELITLMEK 505
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYR 559
HGIGTDASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA
Sbjct: 506 HGIGTDASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVE 565
Query: 560 VQ 561
Q
Sbjct: 566 KQ 567
>gi|388454142|ref|NP_001253336.1| DNA topoisomerase 3-beta-1 [Macaca mulatta]
gi|355784822|gb|EHH65673.1| hypothetical protein EGM_02484 [Macaca fascicularis]
gi|383412047|gb|AFH29237.1| DNA topoisomerase 3-beta-1 [Macaca mulatta]
Length = 862
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/542 (62%), Positives = 404/542 (74%), Gaps = 5/542 (0%)
Query: 25 LTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-C 83
L+ + +NGACSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS
Sbjct: 26 LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQA 85
Query: 84 PTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQIN--INSPK 141
PTEK+EA PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N K
Sbjct: 86 PTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKAYGGEK 145
Query: 142 TVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG 201
TV+RARFS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG
Sbjct: 146 TVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYG 205
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIF 260
DLD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +F
Sbjct: 206 DLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVF 265
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D+ +F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ A
Sbjct: 266 DREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTA 325
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG 380
ERLYTQGY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D G
Sbjct: 326 ERLYTQGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAG 385
Query: 381 DHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
DHPPITP K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E+FT K
Sbjct: 386 DHPPITPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPELFTCSGK 445
Query: 441 YLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
+L PGFT +M W ++ ES+P + GD P+ VKM+E++T+PPDYLTE+ELI+LMEK
Sbjct: 446 TVLSPGFTEIMPWQSVPLEESLPTCQRGDTFPVGEVKMLEKQTSPPDYLTEAELITLMEK 505
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYR 559
HGIGTDASIPVHINNICQRNYV+V SGRRL PT+LGIVLVHGY KID ELV PT+RSA
Sbjct: 506 HGIGTDASIPVHINNICQRNYVSVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVE 565
Query: 560 VQ 561
Q
Sbjct: 566 KQ 567
>gi|355570227|gb|EHH25612.1| hypothetical protein EGK_21503 [Macaca mulatta]
Length = 862
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/542 (62%), Positives = 403/542 (74%), Gaps = 5/542 (0%)
Query: 25 LTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-C 83
L+ + +NGACSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS
Sbjct: 26 LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQA 85
Query: 84 PTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQIN--INSPK 141
PTEK+EA PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N K
Sbjct: 86 PTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKAYGGEK 145
Query: 142 TVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG 201
TV+RARFS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG
Sbjct: 146 TVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYG 205
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIF 260
DLD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +F
Sbjct: 206 DLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVF 265
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D+ +F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ A
Sbjct: 266 DREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTA 325
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG 380
ERLYTQGY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D G
Sbjct: 326 ERLYTQGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAG 385
Query: 381 DHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
DHPPITP K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E+FT K
Sbjct: 386 DHPPITPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPELFTCSGK 445
Query: 441 YLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
L PGFT +M W ++ ES+P + GD P+ VKM+E++T+PPDYLTE+ELI+LMEK
Sbjct: 446 TALSPGFTEIMPWQSVPLEESLPTCQRGDTFPVGEVKMLEKQTSPPDYLTEAELITLMEK 505
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYR 559
HGIGTDASIPVHINNICQRNYV+V SGRRL PT+LGIVLVHGY KID ELV PT+RSA
Sbjct: 506 HGIGTDASIPVHINNICQRNYVSVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVE 565
Query: 560 VQ 561
Q
Sbjct: 566 KQ 567
>gi|348585379|ref|XP_003478449.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Cavia porcellus]
Length = 862
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/536 (62%), Positives = 403/536 (75%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVHE++G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHEYMGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N N KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKTHNGEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+SL
Sbjct: 152 FSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N+ ++ + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNVEKDKSLLLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 272 MFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQTAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+++L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGCLRQQANHPYWADTVKQLLTEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + AT +L GDAWRLY+YI RHFI T+ D Y Q F + E+FT K ++ PG
Sbjct: 392 PMRSATEDELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPELFTCSGKTVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD + VKM+E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSVPLEESLPTCQRGDTFAVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYV+V SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVSVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>gi|12803239|gb|AAH02432.1| Topoisomerase (DNA) III beta [Homo sapiens]
Length = 862
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/542 (62%), Positives = 403/542 (74%), Gaps = 5/542 (0%)
Query: 25 LTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-C 83
L+ + +NGACSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS
Sbjct: 26 LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQA 85
Query: 84 PTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPK 141
PTEK+EA PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N K
Sbjct: 86 PTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKAHGGEK 145
Query: 142 TVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG 201
TV+RARFS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG
Sbjct: 146 TVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYG 205
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIF 260
DLD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +F
Sbjct: 206 DLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVF 265
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D+ +F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ A
Sbjct: 266 DREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTA 325
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG 380
ERLYTQGY+SYPRTETT YPENFDL LRQQ + P W + V+ +L+ GI++PRKG D G
Sbjct: 326 ERLYTQGYISYPRTETTHYPENFDLKGSLRQQANHPYWANTVKRLLAEGINRPRKGHDAG 385
Query: 381 DHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
DHPPITP K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E+FT K
Sbjct: 386 DHPPITPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPELFTCSGK 445
Query: 441 YLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
+L PGFT VM W ++ ES+P + GD P+ VKM+E++T PPDYLTE+ELI+LMEK
Sbjct: 446 TVLSPGFTEVMPWQSVPLEESLPTCQRGDAFPVGEVKMLEKQTNPPDYLTEAELITLMEK 505
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYR 559
HGIGTDASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA
Sbjct: 506 HGIGTDASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVE 565
Query: 560 VQ 561
Q
Sbjct: 566 KQ 567
>gi|397472510|ref|XP_003807785.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Pan paniscus]
gi|397472512|ref|XP_003807786.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Pan paniscus]
Length = 862
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/542 (62%), Positives = 402/542 (74%), Gaps = 5/542 (0%)
Query: 25 LTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-C 83
L+ + +NGACSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS
Sbjct: 26 LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQA 85
Query: 84 PTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPK 141
PTEK+EA PKL + FL E + C+++VLWLDCDKEGENICFEV++ V +N K
Sbjct: 86 PTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDVVLPVMNKAHGGEK 145
Query: 142 TVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG 201
TV+RARFS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG
Sbjct: 146 TVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYG 205
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIF 260
DLD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +F
Sbjct: 206 DLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVF 265
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D+ +F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ A
Sbjct: 266 DREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTA 325
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG 380
ERLYTQGY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D G
Sbjct: 326 ERLYTQGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAG 385
Query: 381 DHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
DHPPITP K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E+FT K
Sbjct: 386 DHPPITPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPELFTCSGK 445
Query: 441 YLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
+L PGFT VM W ++ ES+P + GD P+ VKM+E++T PPDYLTE+ELI+LMEK
Sbjct: 446 TVLSPGFTEVMPWQSVPLEESLPTCQRGDAFPVGEVKMLEKQTNPPDYLTEAELITLMEK 505
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYR 559
HGIGTDASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA
Sbjct: 506 HGIGTDASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVE 565
Query: 560 VQ 561
Q
Sbjct: 566 KQ 567
>gi|296191436|ref|XP_002743624.1| PREDICTED: DNA topoisomerase 3-beta-1 [Callithrix jacchus]
Length = 862
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/542 (62%), Positives = 403/542 (74%), Gaps = 5/542 (0%)
Query: 25 LTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-C 83
L+ + +NGACSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS
Sbjct: 26 LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQA 85
Query: 84 PTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPK 141
PTEK+EA PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N K
Sbjct: 86 PTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKAHGGEK 145
Query: 142 TVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG 201
TV+RARFS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG
Sbjct: 146 TVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYG 205
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIF 260
DLD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +F
Sbjct: 206 DLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVF 265
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D+ +F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ A
Sbjct: 266 DREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTA 325
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG 380
ERLYTQGY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D G
Sbjct: 326 ERLYTQGYISYPRTETTHYPENFDLKGALRQQANHPYWADMVKRLLAEGINRPRKGHDAG 385
Query: 381 DHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
DHPPITP + AT +L GDAWRLY+YI RHFI T+ D Y Q F + E+FT K
Sbjct: 386 DHPPITPMRSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPELFTCSGK 445
Query: 441 YLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
+L PGFT +M W ++ ES+P + GD + VKM+E++T+PPDYLTE+ELI+LMEK
Sbjct: 446 TVLSPGFTEIMPWQSVPLEESLPTCQRGDTFTVSEVKMLEKQTSPPDYLTEAELITLMEK 505
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYR 559
HGIGTDASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA
Sbjct: 506 HGIGTDASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVE 565
Query: 560 VQ 561
Q
Sbjct: 566 KQ 567
>gi|449281995|gb|EMC88926.1| DNA topoisomerase 3-beta-1 [Columba livia]
Length = 862
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/536 (62%), Positives = 403/536 (75%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVHE+ G G FKMTSVCGH+M LDF KYN+WDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHEYTGSFIGQSAHFKMTSVCGHVMTLDFIGKYNSWDKVDPAELFSKAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+ +VLWLDCDKEGENICFEV++AV +N ++ +TV+RA+
Sbjct: 92 ANPKLTMVKFLQVEGRGCDCIVLWLDCDKEGENICFEVLDAVLPVMNKPRSTERTVYRAK 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM +L +PN EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDTDICNAMNHLGEPNRNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNG-VAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N ++++ W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNPEKESSLTLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + K V V K K +P ALNTVE++RVAS+ LGMGP HAMQIAERLYTQ
Sbjct: 272 MFLNITKTAKEAKVESVSKKEKVKQRPLALNTVEMLRVASAALGMGPQHAMQIAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ ++P W + V+ +LS GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGCLRQQANNPYWAETVKALLSEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + AT +L GD WRLY+YI RHFI T+ D Y Q FS+ E FT K + PG
Sbjct: 392 PMRAATEAELGGDGWRLYEYITRHFIATVSADCKYLQTTIAFSIGPERFTCVGKVVTSPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GDL PI +K++E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWHSIALEESLPHCEKGDLFPISEIKLLEKQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>gi|158255430|dbj|BAF83686.1| unnamed protein product [Homo sapiens]
Length = 862
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/542 (62%), Positives = 402/542 (74%), Gaps = 5/542 (0%)
Query: 25 LTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-C 83
L+ + +NGACSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS
Sbjct: 26 LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQA 85
Query: 84 PTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPK 141
PTEK+EA PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N K
Sbjct: 86 PTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKAHGGEK 145
Query: 142 TVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG 201
TV+RARFS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG
Sbjct: 146 TVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYG 205
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIF 260
DLD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +F
Sbjct: 206 DLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVF 265
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D+ +F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ A
Sbjct: 266 DREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTA 325
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG 380
ERLYTQGY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D G
Sbjct: 326 ERLYTQGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAG 385
Query: 381 DHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
DHPPITP K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E+FT K
Sbjct: 386 DHPPITPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPELFTCSGK 445
Query: 441 YLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
+L PGFT VM W ++ ES+P + GD P+ VKM+E++T PPDYLTE+ELI+LMEK
Sbjct: 446 TVLSPGFTEVMPWQSVPLEESLPTCQRGDAFPVGEVKMLEKQTNPPDYLTEAELITLMEK 505
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYR 559
HGI TDASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA
Sbjct: 506 HGICTDASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVE 565
Query: 560 VQ 561
Q
Sbjct: 566 KQ 567
>gi|307219265|ref|NP_001182501.1| topoisomerase (DNA) III beta isoform 1 [Xenopus (Silurana)
tropicalis]
Length = 858
Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/536 (62%), Positives = 399/536 (74%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVHE+ G G V FKMTSVCGH+M LDF KYNNWDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHEYTGSFMGQTVRFKMTSVCGHVMSLDFIGKYNNWDKVDPAELFSKAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++A+ +N +TV+RA+
Sbjct: 92 ANPKLSMVKFLQVEGRGCDYVVLWLDCDKEGENICFEVLDAIHPVMNRAHGGERTVYRAK 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +PN EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDTDILNAMNRLGEPNKNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L + ++ + + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQVKVSRGQENPLILDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + K V V K+K +PQALNTVE++RVASS LGMGP H MQIAERLYTQ
Sbjct: 272 MFINITKTAKEAQVESVSKKEKAKQRPQALNTVEMLRVASSALGMGPQHTMQIAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ ++P W D V+ +L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGTLRQQANNPFWADMVKTLLAEGINRPRKGTDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + AT +L GDAWRLY+YI RHFI T+ D Y Q FSV E FT K ++ PG
Sbjct: 392 PMRSATEAELGGDAWRLYEYITRHFIATISHDCKYLQTSIAFSVGPEKFTTTCKEVISPG 451
Query: 447 FTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W + K ES + GD + +K++E++T PPDYLTE+ELISLME+HGIGTD
Sbjct: 452 FTEIMPWQGIPKEESFQPCERGDKFSVDEMKLMEKQTCPPDYLTEAELISLMERHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV SGRRL PTSLGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVTVESGRRLKPTSLGIVLVHGYYKIDPELVLPTIRSAVEKQ 567
>gi|157786738|ref|NP_001099331.1| DNA topoisomerase 3-beta-1 [Rattus norvegicus]
gi|149019716|gb|EDL77864.1| topoisomerase (DNA) III beta (predicted) [Rattus norvegicus]
Length = 862
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/536 (62%), Positives = 402/536 (75%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVH++ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHKYTGTFAGQPVHFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N N KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGRGCDYVVLWLDCDKEGENICFEVLDAVLPVLNNAHNGEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+SL
Sbjct: 152 FSSITDTDICNAMTRLTEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L ++ + ++ + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKEESLLLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ+AERLYTQ
Sbjct: 272 MFLNMTKLEKEAWVEATSKKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQVAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+++L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGSLRQQANHPYWADSVKQLLAEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E FT K ++ PG
Sbjct: 392 PMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPEHFTCMGKTVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD + VKM+E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSVPLEESLPTCQKGDTFTVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV +GRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVTVENGRRLKPTNLGIVLVHGYHKIDAELVLPTIRSAVEKQ 567
>gi|355725619|gb|AES08614.1| topoisomerase III beta [Mustela putorius furo]
Length = 861
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/536 (62%), Positives = 401/536 (74%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NG CSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGTCSVHEYSGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E K C+++VLWLDCDKEGENICFEV++AV +N KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGKGCDYIVLWLDCDKEGENICFEVLDAVLPVMNPAHGGEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AAM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDTDICAAMARLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N++ ++ + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNVDKDRSLLLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 272 MFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGPLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + AT +L G+AWRLY+YI RHFI T+ D Y Q F + E FT K ++ PG
Sbjct: 392 PMRSATEAELGGEAWRLYEYITRHFIATVSYDCKYLQSTIAFRIGSEHFTCTGKTVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD P+ +KM+E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSVPLEESLPTCQRGDTFPVSEIKMLEKQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>gi|260805074|ref|XP_002597412.1| hypothetical protein BRAFLDRAFT_80591 [Branchiostoma floridae]
gi|229282677|gb|EEN53424.1| hypothetical protein BRAFLDRAFT_80591 [Branchiostoma floridae]
Length = 858
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/535 (61%), Positives = 395/535 (73%), Gaps = 4/535 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREA 90
+NGACSVHE+ G G+ V FKMTSVCGH+M LDF YNNWD+VDP +LF PT K+EA
Sbjct: 32 INGACSVHEYTGKFHGESVKFKMTSVCGHVMSLDFQGVYNNWDRVDPADLFRAPTNKKEA 91
Query: 91 TPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRARF 148
P LK+P FL E + + LVLWLDCDKEGENICFEV++AVR +N + ++R++F
Sbjct: 92 NPNLKMPKFLELEGRGADILVLWLDCDKEGENICFEVIDAVRPSMNRPRGREQYIYRSKF 151
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
SAIT+ DI+ AM L +PN EA SVDARQELDLRIGCAFTR+QTKFFQGKYGDLD+SLI
Sbjct: 152 SAITETDIRGAMMRLGEPNENEAMSVDARQELDLRIGCAFTRFQTKFFQGKYGDLDSSLI 211
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLN-LNGVAVSVTWSRGHIFDKSTCNV 267
S+GPCQTPTLGFCV+RHD+I++FKPE YW++ ++ N + + W R +FD+
Sbjct: 212 SFGPCQTPTLGFCVDRHDQIQSFKPETYWVIQTQVSGKNNSPLWLDWDRVRLFDREVAQT 271
Query: 268 FFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQG 327
F V+ K VV V K+K +P ALNTVEL+RVASS LGM P H MQ+AERLYTQG
Sbjct: 272 FLNIVKGAKEAKVVSVTKKEKAKQRPIALNTVELLRVASSSLGMAPQHTMQVAERLYTQG 331
Query: 328 YVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITP 387
Y+SYPRTETT YPENFDL LRQQ + WG VRE+L G+ KPRKG D GDHPPITP
Sbjct: 332 YISYPRTETTHYPENFDLKGTLRQQTGNSSWGPIVRELLDKGMQKPRKGSDAGDHPPITP 391
Query: 388 TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
+ AT ++L G+ WR+Y+YI HFI T+ D Y Q KF VA E F++ K L+ G+
Sbjct: 392 MRSATESELGGEGWRVYEYITSHFIATVSKDCKYLQTTVKFDVAGESFSVTGKTLIDAGY 451
Query: 448 TGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDA 506
T VM W + ES+P F+ GD+ + VK+ E++T+PPDYLTE+ELISLMEKHGIGTDA
Sbjct: 452 TAVMHWQGISAEESVPHFEKGDVCTVNEVKLAEKQTSPPDYLTEAELISLMEKHGIGTDA 511
Query: 507 SIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
SIPVHINNICQRNYVTV GR+L+PT LGIVLVHGYQKID ELV P MRSA Q
Sbjct: 512 SIPVHINNICQRNYVTVGGGRKLIPTPLGIVLVHGYQKIDPELVLPHMRSAVETQ 566
>gi|449477313|ref|XP_002199057.2| PREDICTED: DNA topoisomerase 3-beta-1 [Taeniopygia guttata]
Length = 1002
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/563 (59%), Positives = 411/563 (73%), Gaps = 5/563 (0%)
Query: 4 RVKKLVPASEIKLARPSLISLLTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGL 63
R K +I R S ++ + +NGACSVHE+ G G FKMTSVCGH+M L
Sbjct: 145 RAPKKRSLEQIHRPRSSSRGNMSSRKGLNGACSVHEYTGSFIGQSAHFKMTSVCGHVMTL 204
Query: 64 DFTSKYNNWDKVDPLELFS-CPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGEN 122
DF KYN+WDKVDP ELFS PTEK+EA PKL + FL E + C+ +VLWLDCDKEGEN
Sbjct: 205 DFIGKYNSWDKVDPAELFSKAPTEKKEANPKLTMVKFLQVEGRGCDCIVLWLDCDKEGEN 264
Query: 123 ICFEVMEAVRHQINI--NSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQEL 180
ICFEV++AV +N + +T++RA+FS+ITD DI AM +L +PN EA SVDARQEL
Sbjct: 265 ICFEVLDAVLPVMNKPRGTERTIYRAKFSSITDTDICNAMNHLGEPNRNEALSVDARQEL 324
Query: 181 DLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 240
DLRIGCAFTR+QTK+FQGKYG+LD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L
Sbjct: 325 DLRIGCAFTRFQTKYFQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQ 384
Query: 241 LTLNLNG-VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTV 299
+N ++++ W R +FD+ +F + K V V K K +P ALNTV
Sbjct: 385 AKVNPEKESSLTLDWDRVRVFDREVAQMFLNITKMAKEAKVESVSKKEKVKQRPLALNTV 444
Query: 300 ELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWG 359
E++RVAS+ LGMGP HAMQIAERLYTQGY+SYPRTETT YPENFDL LRQQ ++P W
Sbjct: 445 EMLRVASAALGMGPQHAMQIAERLYTQGYISYPRTETTHYPENFDLKGCLRQQANNPYWA 504
Query: 360 DHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDL 419
+ V+ +LS GI++PRKG D GDHPPITP + AT +L GD WRLY+YI RHFI T+ D
Sbjct: 505 ETVKVLLSEGINRPRKGHDAGDHPPITPMRAATEAELGGDGWRLYEYITRHFIATVSADC 564
Query: 420 VYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMV 478
Y Q FS+ E FT K + PGFT +M W ++ ES+P + GDL PI +K++
Sbjct: 565 KYLQTTISFSIGPERFTCVGKVVTSPGFTEIMPWHSIPLEESLPHCEKGDLFPIGEIKLL 624
Query: 479 ERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
E++T+PPDYLTE+ELI+LMEKHGIGTDASIPVHINNICQRNYVTV SGRRL PT+LGIVL
Sbjct: 625 EKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESGRRLKPTNLGIVL 684
Query: 539 VHGYQKIDRELVEPTMRSAYRVQ 561
VHGY KID ELV PT+RSA Q
Sbjct: 685 VHGYYKIDAELVLPTIRSAVEKQ 707
>gi|354481406|ref|XP_003502892.1| PREDICTED: DNA topoisomerase 3-beta-1 [Cricetulus griseus]
gi|344253468|gb|EGW09572.1| DNA topoisomerase 3-beta-1 [Cricetulus griseus]
Length = 862
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/536 (62%), Positives = 402/536 (75%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVH++ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHKYTGTFAGQPVHFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++AV+ +N + KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVQPVMNNAHSGEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+SL
Sbjct: 152 FSSITDTDICNAMTRLSEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FK E YW+L ++ N ++ + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKSETYWVLQAKVHNNKEESLLLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQIAERLYTQ
Sbjct: 272 MFLNMTKLEKEAQVEATSRKEKTKQRPLALNTVEMLRVASSALGMGPQHAMQIAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+++L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGSLRQQANHPYWADSVKQLLAEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E FT K ++ PG
Sbjct: 392 PMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPEHFTCSGKTVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD + VKM+E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSVPLEESLPTCQKGDTFAVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>gi|395862158|ref|XP_003803330.1| PREDICTED: DNA topoisomerase 3-beta-1 [Otolemur garnettii]
Length = 862
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/536 (62%), Positives = 401/536 (74%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++ V +N KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDTVLPVMNKAHGGEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM +L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+SL
Sbjct: 152 FSSITDTDICNAMAHLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 272 MFLNLTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGSLRQQANHPYWADSVKRLLAEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + AT +L GDAWRLY+YI RHFI T+ D Y Q F + E+FT + ++ PG
Sbjct: 392 PMRSATEAELGGDAWRLYEYITRHFIATVSHDCRYLQSTISFRIGPELFTCSGRTVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT VM W ++ ES+P + G+ P+ VKM+E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEVMPWQSVPLEESLPTCQRGNTFPVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINN+CQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNVCQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVERQ 567
>gi|195399043|ref|XP_002058130.1| GJ15664 [Drosophila virilis]
gi|194150554|gb|EDW66238.1| GJ15664 [Drosophila virilis]
Length = 858
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/550 (61%), Positives = 403/550 (73%), Gaps = 14/550 (2%)
Query: 18 RPSLISLLTPL--------QRMNGACSVHEWVGPLFGD-LVLFKMTSVCGHIMGLDFTSK 68
+PSL + L + +R N CS HEW G + V F+MTSVCGH+M LDFTSK
Sbjct: 10 KPSLAASLAGILSNGRCTAKRGNNGCSTHEWTGHFRNEGSVHFRMTSVCGHVMSLDFTSK 69
Query: 69 YNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVM 128
Y +WDKVDP+ELF C TEK+E PK ++ +FLA+EA+ C++LVLWLDCDKEGENICFEVM
Sbjct: 70 YTSWDKVDPVELFGCTTEKKECNPKQQMRSFLAHEARGCDYLVLWLDCDKEGENICFEVM 129
Query: 129 EAVRHQI-NINSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCA 187
+AV+H I N+ S +RA FSAITDKDIK AM L PN EA+SVDARQELDLRIGCA
Sbjct: 130 DAVQHVIHNVYSRNVTYRAHFSAITDKDIKGAMETLGHPNENEAKSVDARQELDLRIGCA 189
Query: 188 FTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNG 247
FTR+QTKFFQG+YGDLD+SLISYGPCQTPTLGFCV+RHD I+TFKPE +W L L
Sbjct: 190 FTRFQTKFFQGRYGDLDSSLISYGPCQTPTLGFCVKRHDDIQTFKPETFWYLQLMAGQP- 248
Query: 248 VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASS 307
++ W+RG +F K + V++ K TV V S K+KPQALNTVELMR+ SS
Sbjct: 249 -EYTLEWARGRVFKKDIAIMLLNRVKEHKEATVESVSSKESFKSKPQALNTVELMRICSS 307
Query: 308 GLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLS 367
GLG+GP AMQIAERLYTQGY+SYPRTET QYPENFDL AVLR + S D+GD R +
Sbjct: 308 GLGIGPFQAMQIAERLYTQGYISYPRTETNQYPENFDLHAVLRVLQPSGDFGDEARAIAG 367
Query: 368 NGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAK 427
+ PRKGKD GDHPPITP KL R D D WR+Y++I RHF+GT+ DL Y AK
Sbjct: 368 D-FQTPRKGKDAGDHPPITPMKLGHRGDFDRDTWRVYEFICRHFMGTISRDLKYRTTTAK 426
Query: 428 FSVADEMFTMEAKYLLHPGFTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPD 486
V E FT A LL GFT VMTW A K+E++P F G + I V++ E +T PPD
Sbjct: 427 LRVGLECFTCTANVLLDAGFTKVMTWQAFGKDEAMPPFVQGSQVAINDVRLAESQTGPPD 486
Query: 487 YLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKID 546
YLTE+ELI+LME+HGIGTDASIPVHINNICQRNYV + +GR+L+PT+LGIVLVHGYQKID
Sbjct: 487 YLTEAELITLMEQHGIGTDASIPVHINNICQRNYVRIETGRKLIPTTLGIVLVHGYQKID 546
Query: 547 RELVEPTMRS 556
ELV PTMRS
Sbjct: 547 PELVLPTMRS 556
>gi|351706851|gb|EHB09770.1| DNA topoisomerase 3-beta-1 [Heterocephalus glaber]
Length = 862
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/536 (62%), Positives = 401/536 (74%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVHE+ G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHEYTGTFDSQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N + KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKAHSGEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+SL
Sbjct: 152 FSSITDTDICNAMARLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNADKDKSLLLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 272 MFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQTAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+++L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKQLLTEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + AT +L GDAWRLY+YI RHFI T+ D Y Q F + E+FT K ++ PG
Sbjct: 392 PMRSATEDELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFQIGPELFTCSGKTVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD + VKM+E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSVPLEESLPTCQRGDTFTVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>gi|148665014|gb|EDK97430.1| topoisomerase (DNA) III beta, isoform CRA_a [Mus musculus]
Length = 867
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/536 (62%), Positives = 401/536 (74%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVH++ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 37 LNGACSVHKYTGTFAGQPVHFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 96
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N N KTV+RAR
Sbjct: 97 ANPKLNMVKFLQVEGRGCDYVVLWLDCDKEGENICFEVLDAVLPVMNNAHNGEKTVFRAR 156
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+SL
Sbjct: 157 FSSITDTDICNAMTRLSEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSL 216
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L ++ + ++ + W R +FD
Sbjct: 217 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKEESLLLDWDRVRVFDWEIAQ 276
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQIAERLYTQ
Sbjct: 277 MFLNMTKLEKEAWVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQIAERLYTQ 336
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+++L+ GI++PRKG D GDHPPIT
Sbjct: 337 GYISYPRTETTHYPENFDLKGSLRQQANHPYWADSVKQLLAEGINRPRKGHDAGDHPPIT 396
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E FT K ++ PG
Sbjct: 397 PMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPEHFTCMGKTVISPG 456
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD + VKM+E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 457 FTEIMPWQSVPLEESLPTCQKGDTFTVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTD 516
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 517 ASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 572
>gi|57525152|ref|NP_001006181.1| DNA topoisomerase 3-beta-1 [Gallus gallus]
gi|53132094|emb|CAG31872.1| hypothetical protein RCJMB04_12m15 [Gallus gallus]
gi|66796187|dbj|BAD99111.1| topoisomerase III beta [Gallus gallus]
Length = 862
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/537 (61%), Positives = 401/537 (74%), Gaps = 7/537 (1%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NG CSVHE+ G G FKMTSVCGH+M LDF KYN+WDKVDP ELFS PTEK+E
Sbjct: 32 LNGVCSVHEYTGSFIGQSAHFKMTSVCGHVMTLDFIGKYNSWDKVDPAELFSKAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKT---VWRA 146
A PKL + FL E + C+ +VLWLDCDKEGENICFEV++AV +N SP T ++RA
Sbjct: 92 ANPKLTMVKFLQVEGRGCDSIVLWLDCDKEGENICFEVLDAVLPVMN-KSPSTERMIYRA 150
Query: 147 RFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDAS 206
+FS+ITD DI AM +L +PN+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+S
Sbjct: 151 KFSSITDTDICNAMNHLGEPNLNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSS 210
Query: 207 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNG-VAVSVTWSRGHIFDKSTC 265
LIS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N ++++ W R +FD+
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNPEKESSLTLDWDRVRVFDREIA 270
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
+F + K V V K K +P ALNTVE++RVAS+ LGMGP HAMQIAERLYT
Sbjct: 271 QMFLNITKMAKEAKVESVSKKEKVKQRPLALNTVEMLRVASAALGMGPQHAMQIAERLYT 330
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPI 385
QGY+SYPRTETT YPENFDL LRQQ ++P W + V+ +LS GI++PRKG D GDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGCLRQQANNPYWAETVKALLSEGINRPRKGHDAGDHPPI 390
Query: 386 TPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHP 445
TP K AT +L GD+WRLY+YI RHFI T+ D Y Q FS+ E F K + P
Sbjct: 391 TPMKAATEVELGGDSWRLYEYITRHFIATVSADCKYLQTNISFSIGPERFNCVGKVVTSP 450
Query: 446 GFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGT 504
GFT +M W ++ ES+P + GDL P+ +K++E +T+PPDYLTE+ELI+LMEKHGIGT
Sbjct: 451 GFTEIMPWHSIALEESLPSCEKGDLFPVGEIKLLEMQTSPPDYLTEAELITLMEKHGIGT 510
Query: 505 DASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
DASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 511 DASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>gi|6755851|ref|NP_035754.1| DNA topoisomerase 3-beta-1 [Mus musculus]
gi|6686042|sp|Q9Z321.1|TOP3B_MOUSE RecName: Full=DNA topoisomerase 3-beta-1; AltName: Full=DNA
topoisomerase III beta-1
gi|3868800|dbj|BAA34227.1| topoisomerase III beta [Mus musculus]
gi|21594767|gb|AAH31723.1| Topoisomerase (DNA) III beta [Mus musculus]
gi|74138777|dbj|BAE27200.1| unnamed protein product [Mus musculus]
gi|74194881|dbj|BAE26026.1| unnamed protein product [Mus musculus]
gi|148665016|gb|EDK97432.1| topoisomerase (DNA) III beta, isoform CRA_c [Mus musculus]
Length = 862
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/536 (62%), Positives = 401/536 (74%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVH++ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHKYTGTFAGQPVHFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N N KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGRGCDYVVLWLDCDKEGENICFEVLDAVLPVMNNAHNGEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+SL
Sbjct: 152 FSSITDTDICNAMTRLSEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L ++ + ++ + W R +FD
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKEESLLLDWDRVRVFDWEIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQIAERLYTQ
Sbjct: 272 MFLNMTKLEKEAWVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQIAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+++L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGSLRQQANHPYWADSVKQLLAEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E FT K ++ PG
Sbjct: 392 PMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPEHFTCMGKTVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD + VKM+E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSVPLEESLPTCQKGDTFTVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>gi|344295392|ref|XP_003419396.1| PREDICTED: DNA topoisomerase 3-beta-1 [Loxodonta africana]
Length = 862
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/536 (62%), Positives = 398/536 (74%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHEYTGTFTGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKAHGGEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+SL
Sbjct: 152 FSSITDTDICNAMARLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + + + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNADKDRTLLLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 272 MFLNITKMEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+++L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGPLRQQANHPYWADTVKQLLAEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E FT K ++ PG
Sbjct: 392 PMKAATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTITFRIGPEHFTCSGKTVISPG 451
Query: 447 FTGVMTWSAMKNE-SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ E ++P + GD I +KM+E++T PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSVPPEDNLPTCQRGDTFAISEMKMLEKQTNPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>gi|301792373|ref|XP_002931153.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Ailuropoda melanoleuca]
Length = 862
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/536 (62%), Positives = 400/536 (74%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NG CSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGTCSVHEYSGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E K C+++VLWLDCDKEGENICFEV++AV +N KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGKGCDYIVLWLDCDKEGENICFEVLDAVLPVMNPTHGGEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AAM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDTDICAAMARLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N++ ++ + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNVDKDRSLLLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 272 MFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGPLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + AT +L +AWRLY+YI RHFI T+ D Y Q F + E FT K ++ PG
Sbjct: 392 PMRSATEAELGSEAWRLYEYITRHFIATVSYDCRYLQSTISFRIGPEHFTCTGKTVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD P+ +KM+E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSVPLEESLPTCQRGDTFPVSEMKMLEKQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVTVESGRRLRPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>gi|73995957|ref|XP_534771.2| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Canis lupus
familiaris]
Length = 862
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/536 (62%), Positives = 400/536 (74%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NG CSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGTCSVHEYSGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E K C+++VLWLDCDKEGENICFEV++AV +N + KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGKGCDYIVLWLDCDKEGENICFEVLDAVLPVMNPTHSGEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AAM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDTDICAAMARLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNADKDRSLLLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 272 MFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGPLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + AT +L +AWRLY+YI RHFI T+ D Y Q F + E FT K ++ PG
Sbjct: 392 PMRSATEAELGSEAWRLYEYITRHFIATVSYDCKYLQSTISFRIGPEHFTCTGKTVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD P+ +KM+E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSVPLEESLPTCQRGDCFPVSEMKMLEKQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>gi|432094881|gb|ELK26289.1| DNA topoisomerase 3-beta-1 [Myotis davidii]
Length = 836
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/536 (61%), Positives = 399/536 (74%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NG CSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGTCSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQIN--INSPKTVWRAR 147
A PKL + FL E K C+++VLWLDCDKEGENICFEV++AV +N KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGKGCDYIVLWLDCDKEGENICFEVLDAVLPVMNPGRGGEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI +AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+SL
Sbjct: 152 FSSITDTDICSAMARLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N++ ++ + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNVDKDRSLLLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 272 MFLNMTKLEKEAQVEATSKKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+++L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGALRQQANHPYWADTVKQLLAEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + AT +L +AWRLY+YI RHFI T+ D Y Q F + E FT K ++ PG
Sbjct: 392 PMRSATEAELGSEAWRLYEYITRHFIATVSYDCKYLQNTISFRIGPEHFTCTVKTVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD P+ VK++E++T PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSVPLEESLPTCQRGDTFPVGEVKLLEKQTNPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYV V SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVVVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>gi|335301482|ref|XP_003359220.1| PREDICTED: DNA topoisomerase 3-beta-1 [Sus scrofa]
Length = 859
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/536 (62%), Positives = 400/536 (74%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NG CSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGTCSVHEYTGTFAGQPVHFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E K C+++VLWLDCDKEGENICFEV++AV +N S KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGKGCDYIVLWLDCDKEGENICFEVLDAVLPVMNQAHGSEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM +L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+SL
Sbjct: 152 FSSITDTDICNAMAHLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDQDRSLLLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 272 MFLNMTKPEKEAQVEATSKKEKTKQRPLALNTVEMLRVASSALGMGPQHAMQTAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPE+FDL LRQQ + P W D V+++L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPESFDLKGPLRQQANHPYWADTVKQLLAEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + AT +L G+AWRLY+YI RHFI T+ D Y Q F + E FT K ++ PG
Sbjct: 392 PMRSATEAELGGEAWRLYEYITRHFIATVSHDCRYLQSTISFRIGPERFTCTGKTVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD + VKM+E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSVPLEESLPTCQKGDTFAVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYV V SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVVVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>gi|281337636|gb|EFB13220.1| hypothetical protein PANDA_021957 [Ailuropoda melanoleuca]
Length = 839
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/536 (62%), Positives = 400/536 (74%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NG CSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 9 LNGTCSVHEYSGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 68
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E K C+++VLWLDCDKEGENICFEV++AV +N KTV+RAR
Sbjct: 69 ANPKLNMVKFLQVEGKGCDYIVLWLDCDKEGENICFEVLDAVLPVMNPTHGGEKTVFRAR 128
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AAM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+SL
Sbjct: 129 FSSITDTDICAAMARLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSL 188
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N++ ++ + W R +FD+
Sbjct: 189 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNVDKDRSLLLDWDRVRVFDREIAQ 248
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 249 MFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQ 308
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D GDHPPIT
Sbjct: 309 GYISYPRTETTHYPENFDLKGPLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPIT 368
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + AT +L +AWRLY+YI RHFI T+ D Y Q F + E FT K ++ PG
Sbjct: 369 PMRSATEAELGSEAWRLYEYITRHFIATVSYDCRYLQSTISFRIGPEHFTCTGKTVISPG 428
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD P+ +KM+E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 429 FTEIMPWQSVPLEESLPTCQRGDTFPVSEMKMLEKQTSPPDYLTEAELITLMEKHGIGTD 488
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 489 ASIPVHINNICQRNYVTVESGRRLRPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 544
>gi|326929518|ref|XP_003210910.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Meleagris gallopavo]
Length = 862
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/536 (61%), Positives = 402/536 (75%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVHE+ G G FKMTSVCGH+M LDF KYN+WDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHEYTGSFIGQSAHFKMTSVCGHVMTLDFIGKYNSWDKVDPAELFSKAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+ +VLWLDCDKEGENICFEV++AV +N ++ +T++RA+
Sbjct: 92 ANPKLTMVKFLQVEGRGCDCIVLWLDCDKEGENICFEVLDAVLPVMNKPPSTERTIYRAK 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM +L +PN EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDTDICNAMNHLGEPNRNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNG-VAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N ++++ W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNPEKESSLTLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + + V V K K +P ALNTVE++RVAS+ LGMGP HAMQIAERLYTQ
Sbjct: 272 MFLNITKTAREAKVESVSKKEKVKQRPLALNTVEMLRVASAALGMGPQHAMQIAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ ++P W + V+ +LS GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGCLRQQANNPYWAETVKALLSEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P K AT +L GD WRLY+YI RHFI T+ D Y Q FS+ E F+ K + PG
Sbjct: 392 PMKAATEVELGGDGWRLYEYITRHFIATVSADCKYLQTNISFSIGPERFSCVGKVVTSPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GDL P+ +K++E +T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWHSIPLEESLPCCEKGDLFPVGEIKLLEMQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>gi|327280844|ref|XP_003225161.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 1 [Anolis
carolinensis]
Length = 862
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/536 (61%), Positives = 401/536 (74%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVHE+ G G FKMTSVCGH+M LDF KYNNWDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHEYTGSFIGQSSHFKMTSVCGHVMTLDFIGKYNNWDKVDPAELFSKAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++A+ +N S + V+RA+
Sbjct: 92 ANPKLNMVKFLQVEGRGCDYVVLWLDCDKEGENICFEVLDAIVPIMNKPRGSERVVYRAK 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM +L +PN EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDTDICNAMNHLGEPNHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L ++ +++ W R IFD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPEMYWVLQAKVSHEKDSCLTLDWDRVRIFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + K V V KSK +P ALNTVE++RVAS+ LGMGP HAMQIAERLYTQ
Sbjct: 272 LFLNITKAVKDAKVESVSRKEKSKQRPLALNTVEMLRVASAALGMGPQHAMQIAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ ++P W + V+ +L+ GI+KPRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGSLRQQANNPYWAETVKALLAEGINKPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + A+ +L GD WRL++YI RHFI T+ D Y Q SV E FT K ++ PG
Sbjct: 392 PMRAASEAELGGDGWRLFEYITRHFIATVSADCKYLQTTITCSVGTERFTCIGKTVILPG 451
Query: 447 FTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD+ P+ +K++E++T PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSIPPEESLPSCERGDVFPVSEIKLLEKQTNPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV +GRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVTVENGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>gi|410977257|ref|XP_003995024.1| PREDICTED: DNA topoisomerase 3-beta-1 [Felis catus]
Length = 862
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/536 (61%), Positives = 397/536 (74%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NG CSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGTCSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E K C+++VLWLDCDKEGENICFEV++AV +N KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGKGCDYIVLWLDCDKEGENICFEVLDAVLPIMNPTHGGEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AAM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDMDICAAMARLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNADKDRSLLLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 272 MFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGPLRQQANHPYWADTVKRLLTEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + AT +L +AWRLY+YI RHFI T+ D Y Q F + E FT K ++ PG
Sbjct: 392 PMRSATEAELGSEAWRLYEYITRHFIATVSYDCKYLQSTISFRIGPEHFTCTGKTVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD + +KM+E++T PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSVPLEESLPTCQRGDTFAVSEIKMLEKQTNPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>gi|326667668|ref|XP_003198651.1| PREDICTED: DNA topoisomerase 3-beta-1 [Danio rerio]
Length = 861
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/536 (61%), Positives = 401/536 (74%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVHE++G G V FKMTSVCGH+M LDF KYNNWDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHEYMGSFTGQNVRFKMTSVCGHVMSLDFIGKYNNWDKVDPAELFSKAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQIN--INSPKTVWRAR 147
A PKL + FL EAK C+++VLWLDCDKEGENICFEV++A++ +N + +TV+RA+
Sbjct: 92 ANPKLNMVKFLQVEAKGCDYVVLWLDCDKEGENICFEVLDAIQPVMNKPYGNERTVYRAK 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +PN EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDTDICNAMNRLGEPNKNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDL-TLNLNGVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW++ +++ W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPEAYWVVQAKVFKGKDSPLTLDWDRVRVFDRDIGQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + K V V K+K +P ALNTVE++RVASS LGMGP H MQIAERLYTQ
Sbjct: 272 MFVNMAKTAKEARVDSVTKKEKAKQRPLALNTVEMLRVASSALGMGPQHTMQIAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL L+QQ +S WG+ V+ +LS GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGTLKQQANSTFWGETVKALLSEGINRPRKGADAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + A+ +L D WRLYDYI RHFI T+ D Y Q FS+A E FT K L+ G
Sbjct: 392 PMRAASENELGSDGWRLYDYITRHFIATVSPDCKYLQTTISFSIATEGFTCSGKTLISAG 451
Query: 447 FTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
+T VM W + + E++P + G++ + +K++E++T PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 YTEVMPWQGIAQEEALPVCERGEMFTVDEIKLLEKQTNPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV SGR+L PT+LGIVLVHGY KID +LV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVTVESGRKLKPTNLGIVLVHGYYKIDADLVLPTIRSAVEKQ 567
>gi|348543167|ref|XP_003459055.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Oreochromis
niloticus]
Length = 858
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/541 (60%), Positives = 404/541 (74%), Gaps = 5/541 (0%)
Query: 26 TPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CP 84
T + +NGACSVHE+ G G V FKMTSVCGH+M LDF KYNNWDKVDP ELFS P
Sbjct: 27 TSRKGLNGACSVHEYTGIFQGQTVHFKMTSVCGHVMSLDFIGKYNNWDKVDPAELFSKAP 86
Query: 85 TEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVW 144
TEK+EA PKL + FL EA+ + +VLWLDCDKEGENICFEV++A++ +N S ++V+
Sbjct: 87 TEKKEANPKLNMVKFLQVEARGSDCVVLWLDCDKEGENICFEVLDAIQPVMNKGSARSVY 146
Query: 145 RARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLD 204
RA+FS+ITD DI AM L +PN EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD
Sbjct: 147 RAKFSSITDTDIWNAMNRLGEPNRNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLD 206
Query: 205 ASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN---GVAVSVTWSRGHIFD 261
+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW++ +N + +++ W+R +FD
Sbjct: 207 SSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVIQTKVNHDLRKESPLTLDWNRVRVFD 266
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
+ +F + + V V K+K +PQALNTVE++RVASS LGMGP H MQIAE
Sbjct: 267 REVGQMFVNLAKTSREAQVELVSKKEKTKQRPQALNTVEMLRVASSALGMGPQHTMQIAE 326
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD 381
RLYTQGY+SYPRTETT YP NFDL L+QQ ++P W + V+ +LS GI++PRKG D GD
Sbjct: 327 RLYTQGYISYPRTETTHYPVNFDLKGTLKQQTNNPFWAEEVKVLLSTGINQPRKGTDAGD 386
Query: 382 HPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKY 441
HPPITP AT +L D+WRLY+YI RHFI T+ D Y Q +FS+ E F+ +
Sbjct: 387 HPPITPMCAATEAELGSDSWRLYEYITRHFIATVSQDCKYLQTTIEFSIGTEAFSCSGRT 446
Query: 442 LLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKH 500
L+ PG+T VM W + ESIP + GD + +K++E++T+PPDYLTE+ELI+LMEKH
Sbjct: 447 LISPGYTTVMPWQGIPLEESIPVCEHGDTFSVDEIKLIEKQTSPPDYLTEAELITLMEKH 506
Query: 501 GIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRV 560
GIGTDASIPVHINNICQRNYVTV SGR+L PT+LGIVLVHGY KID ELV PT+RSA
Sbjct: 507 GIGTDASIPVHINNICQRNYVTVESGRKLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEK 566
Query: 561 Q 561
Q
Sbjct: 567 Q 567
>gi|443731127|gb|ELU16364.1| hypothetical protein CAPTEDRAFT_182010 [Capitella teleta]
Length = 856
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/535 (60%), Positives = 404/535 (75%), Gaps = 9/535 (1%)
Query: 32 NGACSVHEWVG--PLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
NGACS+HE+ G P G+ V FK TSVCGH++ LDF K+NNWD+VDP+ELF PT+K+E
Sbjct: 33 NGACSIHEFTGRFPPTGETVRFKFTSVCGHVLSLDFLGKFNNWDRVDPVELFDAPTQKKE 92
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
T KL++P FL EA+ ++LVLWLDCDKEGENICFEV+++V+H +N ++++RA FS
Sbjct: 93 TTEKLRMPQFLEKEARGADYLVLWLDCDKEGENICFEVIDSVKHSMN----RSIFRAHFS 148
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
AITD D+K A L PN EA SVDARQELDLRIGCAFTRYQTKFFQGKYGDLD++LIS
Sbjct: 149 AITDTDVKKAFNTLGVPNENEAMSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDSTLIS 208
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDL-TLNLNGVAVSVTWSRGHIFDKSTCNVF 268
YGPCQTPTLGFCV+RHD+I++FKPE +W++ + ++ +G +S+ W R IFD +F
Sbjct: 209 YGPCQTPTLGFCVDRHDRIQSFKPETFWVIQMQVVHPSGKMMSLDWERVRIFDNEVARMF 268
Query: 269 FKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGY 328
++ +VDVQ KSK +P ALNTVE++R ASSGLG+GP M IAERLYTQGY
Sbjct: 269 LSMIKANDKAVIVDVQKKEKSKARPMALNTVEMLRTASSGLGIGPSTCMMIAERLYTQGY 328
Query: 329 VSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPT 388
+SYPRTETT YPENFDL LR Q+++ +WG V+ +L+ GI KP+KG D GDHPPITP
Sbjct: 329 ISYPRTETTHYPENFDLKGTLRIQQNNHEWGAEVKALLNEGIQKPKKGSDAGDHPPITPM 388
Query: 389 KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
+ AT +L DAWRLY +I RHFIGT+ D Y Q F V +E F+ K L+ GFT
Sbjct: 389 RSATEAELGHDAWRLYSFITRHFIGTISPDCKYLQTTISFKVGNEEFSCTGKTLISAGFT 448
Query: 449 GVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDAS 507
VMTW A+ +E++P G+ I +VK+ ER+T+PPDYLTE+ELI+LMEKHGIGTDAS
Sbjct: 449 SVMTWQALAADENLPKCTVGEKCEISNVKLAERQTSPPDYLTEAELITLMEKHGIGTDAS 508
Query: 508 IPVHINNICQRNYVTVTS-GRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
IPVHINNIC+RNYV VT+ GR+L PT+LGIVLVHGY KID +L++PTMR+A Q
Sbjct: 509 IPVHINNICERNYVNVTATGRKLKPTTLGIVLVHGYVKIDADLIKPTMRAAVEQQ 563
>gi|195448334|ref|XP_002071612.1| GK10076 [Drosophila willistoni]
gi|194167697|gb|EDW82598.1| GK10076 [Drosophila willistoni]
Length = 884
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/529 (62%), Positives = 400/529 (75%), Gaps = 8/529 (1%)
Query: 32 NGACSVHEWVGPLFGD-LVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREA 90
N CS HEW G + V F+MTSVCGH+M LDF SKYN+WDKVDP+ELF CPTEK+E
Sbjct: 33 NNGCSTHEWTGNFRNEGSVHFRMTSVCGHVMSLDFISKYNSWDKVDPVELFGCPTEKKET 92
Query: 91 TPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQI-NINSPKTVWRARFS 149
PK + FLA+EA+ C++LVLWLDCDKEGENICFEVM+AV+H I N+ +P+ +RA FS
Sbjct: 93 NPKQHMRTFLAHEARGCDYLVLWLDCDKEGENICFEVMDAVQHVIRNVYTPQVTYRAHFS 152
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
AIT+KDIK AM L PN EA+SVDARQELDLRIGCAFTR+QTKFFQ +YGDLD+SLIS
Sbjct: 153 AITEKDIKGAMEKLGFPNENEAKSVDARQELDLRIGCAFTRFQTKFFQDRYGDLDSSLIS 212
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCNVF 268
YGPCQTPTLGFCV+RHD I+TFKPE +W L L L G ++ W+R +F K +
Sbjct: 213 YGPCQTPTLGFCVKRHDDIQTFKPESFWYLQL---LAGQPEFTLEWARVRVFKKDIAIML 269
Query: 269 FKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGY 328
+ V+++K V V S K+KPQALNTVELMR+ SSGLG+GP AMQIAERLYTQG+
Sbjct: 270 MQKVKEQKEAMVESVTSKETFKSKPQALNTVELMRICSSGLGIGPFQAMQIAERLYTQGF 329
Query: 329 VSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPT 388
+SYPRTET QYP NFDL AV+R + S ++GD RE+ ++ + PRKGKD GDHPPITP
Sbjct: 330 ISYPRTETNQYPANFDLPAVVRVLQPSNEFGDDAREIATD-MQTPRKGKDAGDHPPITPM 388
Query: 389 KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
KLA R + D D WR+Y++I RHF+GT+ DL Y AK V E F+ A L+ GFT
Sbjct: 389 KLAQRGEFDRDTWRVYEFICRHFLGTVSRDLKYRVTTAKLKVGLECFSCSANVLMDAGFT 448
Query: 449 GVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDAS 507
VMTW A ++E+IP F G + I V++ E +T PPDYLTE+ELI+LME+HGIGTDAS
Sbjct: 449 KVMTWQAFGRDEAIPPFVQGTKVAINDVRLAESQTGPPDYLTEAELITLMEQHGIGTDAS 508
Query: 508 IPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
IPVHINNICQRNYV + +GR+L+PT+LGIVLVHGYQKID ELV PTMRS
Sbjct: 509 IPVHINNICQRNYVRIENGRKLIPTTLGIVLVHGYQKIDPELVLPTMRS 557
>gi|194762590|ref|XP_001963417.1| GF20299 [Drosophila ananassae]
gi|190629076|gb|EDV44493.1| GF20299 [Drosophila ananassae]
Length = 878
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/552 (61%), Positives = 406/552 (73%), Gaps = 17/552 (3%)
Query: 18 RPSLISLLTPL--------QRMNG-ACSVHEWVGPLFGD-LVLFKMTSVCGHIMGLDFTS 67
+PSL + L + +R G CS HEW G + V F+MTSVCGH+M LDF S
Sbjct: 10 KPSLAASLAAILSNGRCTAKRGTGNGCSTHEWTGTFRNEGSVHFRMTSVCGHVMSLDFIS 69
Query: 68 KYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEV 127
KYN+WDKVDP+ELFSCPTEK+E PK + FLA+EAK C++LVLWLDCDKEGENICFEV
Sbjct: 70 KYNSWDKVDPVELFSCPTEKKETNPKQHMRTFLAHEAKGCDYLVLWLDCDKEGENICFEV 129
Query: 128 MEAVRHQI-NINSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGC 186
M+AV++ I N+ S + +RA FSAIT+KDIK AM L PN EA+SVDARQELDLRIGC
Sbjct: 130 MDAVQNVIHNVYSRQVTYRAHFSAITEKDIKGAMETLGHPNENEAKSVDARQELDLRIGC 189
Query: 187 AFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN 246
AFTR+QTKFFQ +YGDLD+SLISYGPCQTPTLGFCV+RHD I+TFKPE +W L L L
Sbjct: 190 AFTRFQTKFFQDRYGDLDSSLISYGPCQTPTLGFCVKRHDDIQTFKPESFWYLQL---LA 246
Query: 247 GV-AVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVA 305
G ++ W+RG +F K V+++K TV V S K+KPQALNTVELMR+
Sbjct: 247 GQPEFTLEWARGRVFKKDIAITLLNRVKEQKEATVESVSSKEAFKSKPQALNTVELMRIC 306
Query: 306 SSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREV 365
SSGL +GP AMQIAERLYTQGY+SYPRTET QYP NFDL AVLR + S ++GD R +
Sbjct: 307 SSGLSIGPFQAMQIAERLYTQGYISYPRTETNQYPANFDLPAVLRVLQPSGEFGDEARSI 366
Query: 366 LSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKV 425
L + + PRKGKD GDHPPITP KL +R+ D D WR+Y++I RHF+GT+ DL Y
Sbjct: 367 LGD-LQTPRKGKDAGDHPPITPMKLGSRSDFDRDTWRVYEFICRHFMGTVSRDLKYRTTT 425
Query: 426 AKFSVADEMFTMEAKYLLHPGFTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTP 484
AK V E F+ A LL GFT VMTW A ++E +P F G + I V++ E +T P
Sbjct: 426 AKLRVGLETFSCTANVLLDAGFTKVMTWQAFGRDEPMPPFVQGTQVAINDVRLAESQTGP 485
Query: 485 PDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQK 544
PDYLTE+ELI+LME+HGIGTDASIPVHINNICQRNYV + +GR+L+PT+LGIVLVHGYQK
Sbjct: 486 PDYLTEAELITLMEQHGIGTDASIPVHINNICQRNYVRIENGRKLIPTTLGIVLVHGYQK 545
Query: 545 IDRELVEPTMRS 556
ID ELV PTMRS
Sbjct: 546 IDPELVLPTMRS 557
>gi|348543165|ref|XP_003459054.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Oreochromis
niloticus]
Length = 856
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/539 (60%), Positives = 401/539 (74%), Gaps = 3/539 (0%)
Query: 26 TPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CP 84
T + +NGACSVHE+ G G V FKMTSVCGH+M LDF KYNNWDKVDP ELFS P
Sbjct: 27 TSRKGLNGACSVHEYTGIFQGQTVHFKMTSVCGHVMSLDFIGKYNNWDKVDPAELFSKAP 86
Query: 85 TEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVW 144
TEK+EA PKL + FL EA+ + +VLWLDCDKEGENICFEV++A++ +N S ++V+
Sbjct: 87 TEKKEANPKLNMVKFLQVEARGSDCVVLWLDCDKEGENICFEVLDAIQPVMNKGSARSVY 146
Query: 145 RARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLD 204
RA+FS+ITD DI AM L +PN EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD
Sbjct: 147 RAKFSSITDTDIWNAMNRLGEPNRNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLD 206
Query: 205 ASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDL-TLNLNGVAVSVTWSRGHIFDKS 263
+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW++ +++ W+R +FD+
Sbjct: 207 SSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVIQTKVFKGKESPLTLDWNRVRVFDRE 266
Query: 264 TCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERL 323
+F + + V V K+K +PQALNTVE++RVASS LGMGP H MQIAERL
Sbjct: 267 VGQMFVNLAKTSREAQVELVSKKEKTKQRPQALNTVEMLRVASSALGMGPQHTMQIAERL 326
Query: 324 YTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHP 383
YTQGY+SYPRTETT YP NFDL L+QQ ++P W + V+ +LS GI++PRKG D GDHP
Sbjct: 327 YTQGYISYPRTETTHYPVNFDLKGTLKQQTNNPFWAEEVKVLLSTGINQPRKGTDAGDHP 386
Query: 384 PITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLL 443
PITP AT +L D+WRLY+YI RHFI T+ D Y Q +FS+ E F+ + L+
Sbjct: 387 PITPMCAATEAELGSDSWRLYEYITRHFIATVSQDCKYLQTTIEFSIGTEAFSCSGRTLI 446
Query: 444 HPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGI 502
PG+T VM W + ESIP + GD + +K++E++T+PPDYLTE+ELI+LMEKHGI
Sbjct: 447 SPGYTTVMPWQGIPLEESIPVCEHGDTFSVDEIKLIEKQTSPPDYLTEAELITLMEKHGI 506
Query: 503 GTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
GTDASIPVHINNICQRNYVTV SGR+L PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 507 GTDASIPVHINNICQRNYVTVESGRKLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 565
>gi|417405013|gb|JAA49232.1| Putative dna topoisomerase iii alpha [Desmodus rotundus]
Length = 862
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/536 (61%), Positives = 396/536 (73%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NG CSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGTCSVHEYTGTFAGQTVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E K C+++VLWLDCDKEGENICFEV++AV +N KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGKGCDYIVLWLDCDKEGENICFEVLDAVLPVMNPAHGGDKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+SL
Sbjct: 152 FSSITDTDICNAMARLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHD+I++FKPE YW+L +N + ++ + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDRIQSFKPETYWVLQAKVNADKDRSLLLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 272 MFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W + V+ +L GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGPLRQQANHPYWAETVKRLLVEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + AT +L +AWRLY+YI RHFI T+ D Y Q F + E FT K ++ PG
Sbjct: 392 PMRSATEAELGSEAWRLYEYITRHFIATVSYDCKYLQNTISFRIGPEHFTCTVKTVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD P+ VK++E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSVPLEESLPPCQRGDTFPVAEVKLLEKQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYV V SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVVVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>gi|149720154|ref|XP_001493576.1| PREDICTED: DNA topoisomerase 3-beta-1 [Equus caballus]
Length = 862
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/536 (61%), Positives = 395/536 (73%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NG CSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGTCSVHEYTGTFAGQAVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNQAHGGEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDTDICNAMARLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 272 MFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGPLRQQANHPAWADTVKRLLAEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + AT +L +AWRLY+YI RHFI T+ D Y Q F + E F K ++ PG
Sbjct: 392 PMRSATEAELGSEAWRLYEYITRHFIATVSYDCKYLQSSISFRIGPEHFCCTGKTVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD + VKM+E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSVPLEESLPTCQRGDTFAVSEVKMLEKQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYV V SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVVVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>gi|195041892|ref|XP_001991334.1| GH12112 [Drosophila grimshawi]
gi|193901092|gb|EDV99958.1| GH12112 [Drosophila grimshawi]
Length = 862
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/535 (61%), Positives = 398/535 (74%), Gaps = 8/535 (1%)
Query: 26 TPLQRMNGACSVHEWVGPLFGD-LVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCP 84
T +R +CS +EW G + V F+MTSVCGH+M LDF SKY +WDKVDP+ELF CP
Sbjct: 27 TAAKRGINSCSTYEWSGNFRNEGTVHFRMTSVCGHVMSLDFISKYTSWDKVDPVELFGCP 86
Query: 85 TEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQI-NINSPKTV 143
TEK+E PK ++ FL+ EA+ C++LVLWLDCDKEGENICFEVM+AV+H I N+ S
Sbjct: 87 TEKKECNPKQQMRTFLSQEARGCDYLVLWLDCDKEGENICFEVMDAVQHVIHNVYSHNVT 146
Query: 144 WRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL 203
+RA FSAITDKDIK AM L PN EA+SVDARQELDLRIGCAFTR+QTKFFQG+YGDL
Sbjct: 147 YRAHFSAITDKDIKGAMDKLGHPNENEAKSVDARQELDLRIGCAFTRFQTKFFQGRYGDL 206
Query: 204 DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDK 262
D+SLISYGPCQTPTLGFCV+RHD I+TFKPE +W L L L G ++ W+RG +F K
Sbjct: 207 DSSLISYGPCQTPTLGFCVKRHDDIQTFKPETFWYLQL---LAGQPEFTLEWARGRVFKK 263
Query: 263 STCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAER 322
+ V++ K TV V S ++KPQALNTVELMR+ SSGLG+GP+ AMQ AER
Sbjct: 264 DIAIMLLNRVKEHKEATVESVSSKESFRSKPQALNTVELMRICSSGLGIGPYQAMQFAER 323
Query: 323 LYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDH 382
LYTQGY+SYPRTET QYPENFDL AVLR + S D+G+ R + ++ PRKGKD GDH
Sbjct: 324 LYTQGYISYPRTETNQYPENFDLHAVLRVLQPSSDFGEEARAIAAD-FQTPRKGKDAGDH 382
Query: 383 PPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYL 442
PPITP KLA R + D D WR+Y++I RHF+GT+ DL Y AK E F+ A L
Sbjct: 383 PPITPMKLANRNEFDRDTWRVYEFICRHFLGTISRDLKYRTTTAKLRAGIESFSCTANVL 442
Query: 443 LHPGFTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHG 501
L G+T VMTW A K+E +P F G + I V++ E +T PPDYLTE+ELI+LME+HG
Sbjct: 443 LDAGYTKVMTWLAFGKDEPMPPFVQGTQVAINDVRLAESQTGPPDYLTEAELITLMEQHG 502
Query: 502 IGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
IGTDASIPVHINNICQRNYV + +GR+L+PT+LGIVLVHGYQKID ELV PTMRS
Sbjct: 503 IGTDASIPVHINNICQRNYVRIETGRKLIPTTLGIVLVHGYQKIDPELVLPTMRS 557
>gi|195164959|ref|XP_002023313.1| GL20281 [Drosophila persimilis]
gi|198468405|ref|XP_001354695.2| GA17464 [Drosophila pseudoobscura pseudoobscura]
gi|194105418|gb|EDW27461.1| GL20281 [Drosophila persimilis]
gi|198146398|gb|EAL31750.2| GA17464 [Drosophila pseudoobscura pseudoobscura]
Length = 875
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/527 (63%), Positives = 394/527 (74%), Gaps = 8/527 (1%)
Query: 34 ACSVHEWVGPLFGD-LVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP 92
CS HEW G + V F+MTSVCGH+M LDF SKYN+WDKVDP++LF CPTEK+E +P
Sbjct: 35 GCSTHEWTGTFRNEGTVHFRMTSVCGHVMSLDFISKYNSWDKVDPVQLFGCPTEKKETSP 94
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQI-NINSPKTVWRARFSAI 151
K + FLA+EA+ C++LVLWLDCDKEGENICFEVM+AV+ I N+ S + +RA FSAI
Sbjct: 95 KQHMRTFLAHEARGCDYLVLWLDCDKEGENICFEVMDAVQGVISNVYSKQVTYRAHFSAI 154
Query: 152 TDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYG 211
TDKDIK AM L PN EA+SVDARQELDLRIGCAFTR+QTKFFQ +YGDLD+SLISYG
Sbjct: 155 TDKDIKGAMETLGHPNENEAKSVDARQELDLRIGCAFTRFQTKFFQDRYGDLDSSLISYG 214
Query: 212 PCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCNVFFK 270
PCQTPTLGFCV+RHD I+TFKPE +W L + L G ++ W RG +F K +
Sbjct: 215 PCQTPTLGFCVKRHDDIQTFKPESFWYLQM---LAGQPEFTLEWGRGRVFKKDIAIMLLN 271
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVS 330
V++ K TV V S K+KP ALNTVELMR+ SSGLG+GP AMQIAERLYTQGYVS
Sbjct: 272 RVKEHKEATVESVSSKEAFKSKPLALNTVELMRICSSGLGIGPFQAMQIAERLYTQGYVS 331
Query: 331 YPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKL 390
YPRTET QYPENFDL AVLR + S D+GD R +L + I PRKGKD GDHPPITP KL
Sbjct: 332 YPRTETNQYPENFDLPAVLRVLQPSGDFGDEARSILGD-IQAPRKGKDAGDHPPITPMKL 390
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
A R+ D D WR+Y++I RHF+GTL DL Y AK V E F+ A LL G+T V
Sbjct: 391 ANRSDFDRDTWRVYEFICRHFMGTLSRDLKYRTTTAKLKVGMETFSCTANVLLDQGYTKV 450
Query: 451 MTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
MTW A ++E +P F G + I V++ E +T PPDYLTE+ELI+LME+HGIGTDASIP
Sbjct: 451 MTWLAFGRDEPMPPFVQGTQVAINDVRLAESQTGPPDYLTEAELITLMEQHGIGTDASIP 510
Query: 510 VHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
VHINNICQRNYV + +GR+L+PT+LGIVLVHGY KID ELV PTMRS
Sbjct: 511 VHINNICQRNYVRIENGRKLIPTTLGIVLVHGYTKIDPELVLPTMRS 557
>gi|440895796|gb|ELR47898.1| DNA topoisomerase 3-beta-1, partial [Bos grunniens mutus]
Length = 816
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/536 (61%), Positives = 399/536 (74%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NG CSVHE+ G G FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGTCSVHEYSGAFAGQPARFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+ +VLWLDCDKEGENICFEV++AV +N + +TV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGRGCDCIVLWLDCDKEGENICFEVLDAVLPVMNQAHSGEQTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AAM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDTDICAAMARLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L ++++ ++ + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVDVDKDRSLLLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 272 MFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQTAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPE+FDL LRQQ + P W D V+ +L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPESFDLKGPLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P K AT +L G+AWRLY+YI RHFI T+ D Y Q F + E FT K ++ PG
Sbjct: 392 PMKSATEAELGGEAWRLYEYITRHFIATVSHDCRYLQSSVSFRIGPERFTCTGKTVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD + + VK++E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSVPLEESLPTCQKGDTLAVAEVKLLEKQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYV V SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVIVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>gi|296478358|tpg|DAA20473.1| TPA: topoisomerase (DNA) III beta [Bos taurus]
Length = 734
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/536 (61%), Positives = 399/536 (74%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NG CSVHE+ G G FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGTCSVHEYSGAFEGQPARFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+ +VLWLDCDKEGENICFEV++AV +N + +TV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGRGCDCIVLWLDCDKEGENICFEVLDAVLPVMNQARSGEQTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AAM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDTDICAAMARLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L ++++ ++ + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVDVDKDRSLLLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 272 MFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQTAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPE+FDL LRQQ + P W D V+ +L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPESFDLKGPLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P K AT +L G+AWRLY+YI RHFI T+ D Y Q F + E FT K ++ PG
Sbjct: 392 PMKSATEAELGGEAWRLYEYITRHFIATVSHDCRYLQSSVSFRIGPERFTCTGKAVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD + + VK++E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSVPLEESLPTCQKGDTLAVAEVKLLEKQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYV V SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVIVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>gi|391327272|ref|XP_003738127.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Metaseiulus
occidentalis]
Length = 851
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/533 (60%), Positives = 401/533 (75%), Gaps = 5/533 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREA 90
MNGACSVHEW G FKMTSVCGH+M DFT KYNNWD+VDP ELF P EK+EA
Sbjct: 35 MNGACSVHEWNGNFQKSSARFKMTSVCGHVMTADFTGKYNNWDRVDPAELFLAPIEKKEA 94
Query: 91 TPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSA 150
PKL +P L+ EA+ + +VLWLDCDKEGENICFEV+ A+RH I N+ + RA+FS+
Sbjct: 95 IPKLHMPKMLSIEAEGSDAVVLWLDCDKEGENICFEVINAIRHSIKKNA--QILRAKFSS 152
Query: 151 ITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISY 210
IT+KDIKAAM LV PN EA SVDARQ LDLRIGCAFTR+QTK+FQ KYG+LD+SLIS+
Sbjct: 153 ITEKDIKAAMNCLVSPNENEALSVDARQALDLRIGCAFTRFQTKYFQNKYGNLDSSLISF 212
Query: 211 GPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNL-NGVAVSVTWSRGHIFDKSTCNVFF 269
GPCQTPTLGFCVERHDKI++FKPE YW+L+ + L N V+ W +G IFD+ +V
Sbjct: 213 GPCQTPTLGFCVERHDKIQSFKPENYWVLNAQIKLPNNNIVTPEWDKGSIFDQEVASVCL 272
Query: 270 KAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV 329
+ H V+ +Q SK++P ALNTVELMR AS+GLGMGP HAMQIAE+LYTQG++
Sbjct: 273 AMAKGANHARVLSIQDKEMSKSRPLALNTVELMRAASAGLGMGPQHAMQIAEKLYTQGFI 332
Query: 330 SYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTK 389
SYPRTETT Y EN DL ++ ++ P+ + ++L+NG+ KP+KG DVGDHPPITPTK
Sbjct: 333 SYPRTETTSYSENMDLRGTVQMLKNIPEASNFANKLLANGL-KPKKGTDVGDHPPITPTK 391
Query: 390 LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTG 449
A+R QLDGD+WRLY+YIV HF+G+L GDL Y Q + +E FT+ + + PGFT
Sbjct: 392 AASRAQLDGDSWRLYEYIVAHFLGSLGGDLKYRQMQVALLIGNEPFTLTTRKTIDPGFTA 451
Query: 450 VMTWSAMKNESIP-DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASI 508
+MTW A+ + S + G + + S+K+ ER+T+PPDYLTESELI+LM+KHGIGTDASI
Sbjct: 452 IMTWRAVSSNSESLNLTVGTQLEVVSMKLDERQTSPPDYLTESELIALMDKHGIGTDASI 511
Query: 509 PVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
PVHINNICQRNYVTV +GRRL PT+LGIVL+HGYQ ID++L P MR+A Q
Sbjct: 512 PVHINNICQRNYVTVENGRRLKPTNLGIVLIHGYQAIDKDLCLPWMRAAVEKQ 564
>gi|332000010|ref|NP_001193635.1| DNA topoisomerase 3-beta-1 [Bos taurus]
Length = 861
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/536 (61%), Positives = 399/536 (74%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NG CSVHE+ G G FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGTCSVHEYSGAFEGQPARFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+ +VLWLDCDKEGENICFEV++AV +N + +TV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGRGCDCIVLWLDCDKEGENICFEVLDAVLPVMNQARSGEQTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AAM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDTDICAAMARLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L ++++ ++ + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVDVDKDRSLLLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 272 MFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQTAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPE+FDL LRQQ + P W D V+ +L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPESFDLKGPLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P K AT +L G+AWRLY+YI RHFI T+ D Y Q F + E FT K ++ PG
Sbjct: 392 PMKSATEAELGGEAWRLYEYITRHFIATVSHDCRYLQSSVSFRIGPERFTCTGKAVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD + + VK++E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSVPLEESLPTCQKGDTLAVAEVKLLEKQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYV V SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVIVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>gi|410928142|ref|XP_003977460.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Takifugu rubripes]
Length = 713
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/536 (60%), Positives = 393/536 (73%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSV+E+ G G FKMTSVCGH+M LDF KYNNWDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVYEYTGSFLGQAAHFKMTSVCGHVMSLDFIGKYNNWDKVDPAELFSKAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININS--PKTVWRAR 147
A PKL + FL EAK C ++VLWLDCDKEGENICFEV++A++ +N S K+V+RA+
Sbjct: 92 ANPKLNMIKFLQVEAKGCCYVVLWLDCDKEGENICFEVLDAIQPVMNQGSTREKSVYRAK 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM +L PN EA +VDARQELDLRIGCAFTR+QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDTDICKAMNSLGDPNQNEALAVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDL-TLNLNGVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FK E YW+L +++ WSR +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKAETYWILQAKVFKGKDNPLTLDWSRVRVFDREVGQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + + VV V K K +PQALNTVE++RVAS LGMGP H MQIAERLY Q
Sbjct: 272 MFINLTKTSREAQVVSVSKKEKVKQRPQALNTVEMLRVASQALGMGPQHTMQIAERLYVQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL A L+QQ +S W + V+ +LS G+++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKAALKQQSNSSMWAEEVKALLSGGLNRPRKGSDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + A+ +L D WRLY+YI RHFI T+ D Y Q F + E F+ K L+ G
Sbjct: 392 PMRSASEAELGSDGWRLYEYITRHFIATVSQDCRYLQTTIDFLIGTEAFSCTGKTLISAG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD+ + +K+VE++T PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTALMPWQSIPLEESLPACERGDVFTVDEIKLVEKQTKPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNIC RNYVTV SGRRL PT+LGIVLVHGY K D ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICLRNYVTVESGRRLKPTNLGIVLVHGYYKTDAELVLPTIRSAVEKQ 567
>gi|24640096|ref|NP_511059.2| topoisomerase 3beta [Drosophila melanogaster]
gi|14286175|sp|O96651.2|TOP3B_DROME RecName: Full=DNA topoisomerase 3-beta; AltName: Full=DNA
topoisomerase III beta
gi|7290697|gb|AAF46144.1| topoisomerase 3beta [Drosophila melanogaster]
gi|54650844|gb|AAV37001.1| LD10035p [Drosophila melanogaster]
gi|220950396|gb|ACL87741.1| Top3beta-PA [synthetic construct]
Length = 875
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/527 (62%), Positives = 394/527 (74%), Gaps = 8/527 (1%)
Query: 34 ACSVHEWVGPLFGD-LVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP 92
CS HEW G + V F+MTSVCGH+M LDF KYN WDKVDP++LF C TEK+E P
Sbjct: 35 GCSTHEWTGNFRNEGSVHFRMTSVCGHVMSLDFNKKYNCWDKVDPIQLFGCATEKKETNP 94
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQIN-INSPKTVWRARFSAI 151
K + FLA+EA+ C++LVLWLDCDKEGENICFEVM+AV+H IN + S + +RA FSAI
Sbjct: 95 KQNMRKFLAHEARGCDYLVLWLDCDKEGENICFEVMDAVKHVINNVYSDQVTYRAHFSAI 154
Query: 152 TDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYG 211
T+KDIK AM L PN EA+SVDARQELDLRIGCAFTR+QTKFFQ +YGDLD+SLISYG
Sbjct: 155 TEKDIKKAMETLGHPNENEAKSVDARQELDLRIGCAFTRFQTKFFQDRYGDLDSSLISYG 214
Query: 212 PCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCNVFFK 270
PCQTPTLGFCV+RHD I+TFKPE +W L L L G V++ W+RG +F K +
Sbjct: 215 PCQTPTLGFCVKRHDDIQTFKPESFWHLQL---LAGQPEVTLEWARGRVFKKDIAIMLLN 271
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVS 330
V++ K TV V S K+KPQALNTVELMR+ SSGLG+GP AMQIAERLYTQGY+S
Sbjct: 272 RVKEHKKATVESVASKEAYKSKPQALNTVELMRICSSGLGIGPFQAMQIAERLYTQGYIS 331
Query: 331 YPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKL 390
YPRTET QYP NFDL AVL + S D+G+ R +L + I PRKGKD GDHPPITP KL
Sbjct: 332 YPRTETNQYPTNFDLPAVLHVLKPSADFGEEARSILGD-IQTPRKGKDAGDHPPITPMKL 390
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
R+ D D WR+Y++I RHF+GT+ DL Y AK SV E F+ A L+ GFT V
Sbjct: 391 GNRSDFDRDTWRVYEFICRHFMGTVSRDLKYRVTTAKLSVGMETFSCTASVLIDAGFTKV 450
Query: 451 MTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
MTWSA K+E P F G + I V+++E +T PPDYLTESELI+LME+HGIGTDASIP
Sbjct: 451 MTWSAFGKDEPQPPFVQGTQVAINDVRLIESQTGPPDYLTESELITLMEEHGIGTDASIP 510
Query: 510 VHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
VHINNICQRNYV + +GR+L+PT+LGIVLVHGYQKID ELV PTMR+
Sbjct: 511 VHINNICQRNYVHIENGRKLMPTTLGIVLVHGYQKIDPELVLPTMRT 557
>gi|4235475|gb|AAD13219.1| topoisomerase III [Drosophila melanogaster]
Length = 875
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/527 (62%), Positives = 394/527 (74%), Gaps = 8/527 (1%)
Query: 34 ACSVHEWVGPLFGD-LVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP 92
CS HEW G + V F+MTSVCGH+M LDF KYN WDKVDP++LF C TEK+E P
Sbjct: 35 GCSTHEWTGNFRNEGSVHFRMTSVCGHVMSLDFNKKYNCWDKVDPIQLFGCATEKKETNP 94
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQIN-INSPKTVWRARFSAI 151
K + FLA+EA+ C++LVLWLDCDKEGENICFEVM+AV+H IN + S + +RA FSAI
Sbjct: 95 KQNMRKFLAHEARGCDYLVLWLDCDKEGENICFEVMDAVKHVINNVYSDQVTYRAHFSAI 154
Query: 152 TDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYG 211
T+KDIK AM L PN EA+SVDARQELDLRIGCAFTR+QTKFFQ +YGDLD+SLISYG
Sbjct: 155 TEKDIKKAMETLGHPNENEAKSVDARQELDLRIGCAFTRFQTKFFQDRYGDLDSSLISYG 214
Query: 212 PCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCNVFFK 270
PCQTPTLGFCV+RHD I+TFKPE +W L L L G V++ W+RG +F K +
Sbjct: 215 PCQTPTLGFCVKRHDDIQTFKPESFWHLQL---LAGQPEVTLEWARGRVFKKDIAIMLLN 271
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVS 330
V++ K TV V S K+KPQALNTVELMR+ SSGLG+GP AMQIAERLYTQGY+S
Sbjct: 272 RVKEHKKATVESVASKEAYKSKPQALNTVELMRICSSGLGIGPFQAMQIAERLYTQGYIS 331
Query: 331 YPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKL 390
YPRTET QYP NFDL AVL + S D+G+ R +L + I PRKGKD GDHPPITP KL
Sbjct: 332 YPRTETNQYPTNFDLPAVLHVLKPSADFGEEARSILGD-IQTPRKGKDAGDHPPITPMKL 390
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
R+ D D WR+Y++I RHF+GT+ DL Y AK SV E F+ A L+ GFT V
Sbjct: 391 GNRSDFDRDTWRVYEFICRHFMGTVSRDLKYRVTTAKLSVGMETFSCTASVLIDAGFTKV 450
Query: 451 MTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
MTWSA K+E P F G + I V+++E +T PPDYLTESELI+LME+HGIGTDASIP
Sbjct: 451 MTWSAFGKDEPQPPFVQGTQVAINDVRLIESQTGPPDYLTESELITLMEEHGIGTDASIP 510
Query: 510 VHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
VHINNICQRNYV + +GR+L+PT+LGIVLVHGYQKID ELV PTMR+
Sbjct: 511 VHINNICQRNYVHIENGRKLMPTTLGIVLVHGYQKIDPELVLPTMRT 557
>gi|194896190|ref|XP_001978430.1| GG17682 [Drosophila erecta]
gi|190650079|gb|EDV47357.1| GG17682 [Drosophila erecta]
Length = 878
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/527 (62%), Positives = 394/527 (74%), Gaps = 8/527 (1%)
Query: 34 ACSVHEWVGPLFGD-LVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP 92
CS HEW G + V F+MTSVCGH+M LDF SKYN+WDKVDP++LF CPTEK+E P
Sbjct: 35 GCSTHEWTGNFRNEGSVHFRMTSVCGHVMSLDFISKYNSWDKVDPVQLFGCPTEKKETNP 94
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQI-NINSPKTVWRARFSAI 151
K + FLA+EA+ C++LVLWLDCDKEGENICFEVM+AV+H I N+ S + +RA FSAI
Sbjct: 95 KQHMRTFLAHEARGCDYLVLWLDCDKEGENICFEVMDAVQHVIHNVYSKQVTYRAHFSAI 154
Query: 152 TDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYG 211
T+KDIK AM L PN EA+SVDARQELDLRIGCAFTR+QTKFFQ +YGDLD+SLISYG
Sbjct: 155 TEKDIKGAMETLGHPNENEAKSVDARQELDLRIGCAFTRFQTKFFQDRYGDLDSSLISYG 214
Query: 212 PCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCNVFFK 270
PCQTPTLGFCV+RHD I+TFKPE +W L L L G ++ W+RG +F K +
Sbjct: 215 PCQTPTLGFCVKRHDDIQTFKPESFWHLQL---LAGQPEFTLEWARGRVFKKDIAIMLLG 271
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVS 330
V++ K TV V S K+KPQALNTVELMR+ SSGLG+GP AMQIAERLYTQGY+S
Sbjct: 272 RVKEHKKATVESVASKEAFKSKPQALNTVELMRICSSGLGIGPFQAMQIAERLYTQGYIS 331
Query: 331 YPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKL 390
YPRTET QYP NFDL AVL + S D+G+ R +L + + PRKGKD GDHPPITP KL
Sbjct: 332 YPRTETNQYPTNFDLAAVLHVLKPSGDFGEEARSILGD-MQTPRKGKDAGDHPPITPMKL 390
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
R+ D D WR+Y++I RHF+GT+ DL Y AK V E F+ A L+ GFT V
Sbjct: 391 GNRSDFDRDTWRVYEFICRHFMGTVSRDLKYRVTTAKLRVGLETFSCTANVLIDAGFTKV 450
Query: 451 MTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
MTW A K+E +P F G + I V++ E +T PPDYLTESELI+LME+HGIGTDASIP
Sbjct: 451 MTWQAFGKDEPMPPFVQGTEVAINDVRLTESQTGPPDYLTESELITLMEQHGIGTDASIP 510
Query: 510 VHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
VHINNICQRNYV + +GR+L+PT+LGIVLVHGYQKID ELV PTMR+
Sbjct: 511 VHINNICQRNYVHIENGRKLIPTTLGIVLVHGYQKIDPELVLPTMRT 557
>gi|195469926|ref|XP_002099887.1| GE16470 [Drosophila yakuba]
gi|194187411|gb|EDX00995.1| GE16470 [Drosophila yakuba]
Length = 878
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/527 (62%), Positives = 394/527 (74%), Gaps = 8/527 (1%)
Query: 34 ACSVHEWVGPLFGD-LVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP 92
CS HEW G + V F+MTSVCGH+M LDF SKYN+WDKVDP+ELF CPTEK+E P
Sbjct: 35 GCSTHEWTGNFRNEGSVHFRMTSVCGHVMSLDFISKYNSWDKVDPVELFGCPTEKKETNP 94
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQI-NINSPKTVWRARFSAI 151
K + FLA+EA+ C++LVLWLDCDKEGENICFEVM+AV+H I N+ S + +RA FSAI
Sbjct: 95 KQHMRTFLAHEARGCDYLVLWLDCDKEGENICFEVMDAVQHVIHNVYSKQVTYRAHFSAI 154
Query: 152 TDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYG 211
T+KDIK AM L PN EA+SVDARQELDLRIGCAFTR+QTKFFQ +YGDLD+SLISYG
Sbjct: 155 TEKDIKGAMETLGHPNENEAKSVDARQELDLRIGCAFTRFQTKFFQDRYGDLDSSLISYG 214
Query: 212 PCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCNVFFK 270
PCQTPTLGFCV+RHD I+TFKPE +W L L L G ++ W+RG +F K +
Sbjct: 215 PCQTPTLGFCVKRHDDIQTFKPESFWHLQL---LAGQPEFTLEWARGRVFKKDIAIMLLG 271
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVS 330
V++ K TV V S K+KPQALNTVELMR+ SSGLG+GP AMQIAERLYTQGY+S
Sbjct: 272 RVKEHKEATVESVASKEAFKSKPQALNTVELMRICSSGLGIGPFQAMQIAERLYTQGYIS 331
Query: 331 YPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKL 390
YPRTET QYP NFDL AVL + S D+G+ R +L + + PRKGKD GDHPPITP KL
Sbjct: 332 YPRTETNQYPTNFDLPAVLHVLKPSGDFGEEARSILGD-MQTPRKGKDAGDHPPITPMKL 390
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
R+ D D WR+Y++I RHF+GT+ DL Y AK V E F+ A L+ GFT V
Sbjct: 391 GNRSDFDRDTWRVYEFICRHFMGTVSRDLKYRVTTAKLRVGLETFSCTANVLIDAGFTKV 450
Query: 451 MTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
MTW A ++E +P F G + I V++ E +T PPDYLTESELI+LME+HGIGTDASIP
Sbjct: 451 MTWQAFGRDEPMPPFVQGTQVAINDVRLTESQTGPPDYLTESELITLMEQHGIGTDASIP 510
Query: 510 VHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
VHINNICQRNYV + +GR+L+PT+LGIVLVHGYQKID ELV PTMR+
Sbjct: 511 VHINNICQRNYVHIENGRKLIPTTLGIVLVHGYQKIDPELVLPTMRT 557
>gi|291406914|ref|XP_002719771.1| PREDICTED: topoisomerase (DNA) III beta [Oryctolagus cuniculus]
Length = 863
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/537 (61%), Positives = 397/537 (73%), Gaps = 6/537 (1%)
Query: 31 MNGAC-SVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKR 88
+NGAC S + G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+
Sbjct: 32 LNGACFSARVPLDTSAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKK 91
Query: 89 EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRA 146
EA PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N KTV+RA
Sbjct: 92 EANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVVPVMNKAHGGEKTVFRA 151
Query: 147 RFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDAS 206
RFS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+S
Sbjct: 152 RFSSITDTDICNAMARLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSS 211
Query: 207 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTC 265
LIS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N++ ++ + W R +FD+
Sbjct: 212 LISFGPCQTPTLGFCVERHDKIQSFKPEAYWVLQAKVNVDKDRSLLLDWDRVRVFDREIA 271
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
+F ++EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYT
Sbjct: 272 QMFLNMTKQEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 331
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPI 385
QGY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ G+++PRKG D GDHPPI
Sbjct: 332 QGYISYPRTETTHYPENFDLKGCLRQQANHPYWADTVKRLLAEGVNRPRKGHDAGDHPPI 391
Query: 386 TPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHP 445
TP + AT +L GDAWRLY+YI RHFI T+ D Y Q + E+FT K +L P
Sbjct: 392 TPMRSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQTTISLRIGPELFTCSGKTVLSP 451
Query: 446 GFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGT 504
GFT +M W ++ ES+P + GD + VKM+E++T+PPDYLTE+ELI+LMEKHGIGT
Sbjct: 452 GFTEIMPWQSVPLEESLPTCQRGDTFAVAEVKMLEKQTSPPDYLTEAELITLMEKHGIGT 511
Query: 505 DASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
DASIPVHINNICQRNYVTV SGRRL PT+LG+VLVHGY KID ELV PT+RSA Q
Sbjct: 512 DASIPVHINNICQRNYVTVESGRRLKPTNLGVVLVHGYYKIDAELVLPTIRSAVEKQ 568
>gi|195340394|ref|XP_002036798.1| GM12581 [Drosophila sechellia]
gi|194130914|gb|EDW52957.1| GM12581 [Drosophila sechellia]
Length = 921
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/540 (61%), Positives = 397/540 (73%), Gaps = 8/540 (1%)
Query: 21 LISLLTPLQRMNGACSVHEWVGPLFGD-LVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLE 79
++ LT + CS HEW G + V F+MTSVCGH+M LDF K+N WDKVDP++
Sbjct: 68 VLKQLTEDKCTGNGCSTHEWTGNFRNEGSVHFRMTSVCGHVMSLDFNKKFNCWDKVDPIQ 127
Query: 80 LFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQIN-IN 138
LF C TEK+E PK + FLANEA+ C++LVLWLDCDKEGENICFEVM+AV+ IN +
Sbjct: 128 LFGCATEKKETNPKQNMRKFLANEARGCDYLVLWLDCDKEGENICFEVMDAVKQVINNVY 187
Query: 139 SPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQG 198
S + +RA FSAIT+KDIK AM L PN EA+SVDARQELDLRIGCAFTR+QTKFFQ
Sbjct: 188 SDQVTYRAHFSAITEKDIKKAMETLGHPNENEAKSVDARQELDLRIGCAFTRFQTKFFQD 247
Query: 199 KYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRG 257
+YGDLD+SLISYGPCQTPTLGFCV+RHD I+TFKPE +W L L L G V++ W+RG
Sbjct: 248 RYGDLDSSLISYGPCQTPTLGFCVKRHDDIQTFKPESFWHLQL---LAGQPEVTLEWARG 304
Query: 258 HIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAM 317
+F K + V++ K TV V S K+KPQALNTVELMR+ SSGLG+GP AM
Sbjct: 305 RVFKKDIAIMLLNRVKEHKKATVESVASKEAYKSKPQALNTVELMRICSSGLGIGPFQAM 364
Query: 318 QIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK 377
QIAERLYTQGY+SYPRTET QYP NFDL AVL + S D+G+ R +L + I PRKGK
Sbjct: 365 QIAERLYTQGYISYPRTETNQYPTNFDLPAVLHVLKPSADFGEEARSILGD-IQTPRKGK 423
Query: 378 DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTM 437
D GDHPPITP KL R+ D D WR+Y++I RHF+GT+ DL Y AK V E F+
Sbjct: 424 DAGDHPPITPMKLGNRSDFDRDTWRVYEFICRHFMGTVSRDLKYRVTTAKLRVGMETFSC 483
Query: 438 EAKYLLHPGFTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISL 496
A L+ GFT VMTWSA K+E P F G + I V+++E +T PPDYLTESELI+L
Sbjct: 484 TASVLIDAGFTKVMTWSAFGKDEPQPPFVQGTEVAINDVRLIESQTGPPDYLTESELITL 543
Query: 497 MEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
ME+HGIGTDASIPVHINNICQRNYV + +GR+L+PT+LGIVLVHGYQKID ELV PTMR+
Sbjct: 544 MEEHGIGTDASIPVHINNICQRNYVHIENGRKLMPTTLGIVLVHGYQKIDPELVLPTMRT 603
>gi|291190792|ref|NP_001167403.1| DNA topoisomerase 3-beta-1 [Salmo salar]
gi|223648214|gb|ACN10865.1| DNA topoisomerase 3-beta-1 [Salmo salar]
Length = 857
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/536 (59%), Positives = 396/536 (73%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVHE++G G V FKMTSVCGH+M LDF KYNNWDKVDP ELF+ PTEK+E
Sbjct: 32 LNGACSVHEYMGTFSGQSVRFKMTSVCGHVMSLDFIGKYNNWDKVDPAELFTKAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQIN--INSPKTVWRAR 147
A PKL + FL E K C+++VLWLDCDKEGENICFEV++A+ +N S +TV+RA+
Sbjct: 92 ANPKLNMVKFLQVEGKGCDYVVLWLDCDKEGENICFEVLDAIEPVMNRPYGSERTVYRAK 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AAM L +PN EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDTDIWAAMNKLGEPNRNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDL-TLNLNGVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW++ +++ W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVIQAKVFKGKESPLTLDWDRVRVFDREVGQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + + V V K+K +P ALNTVE++RVASS LGMGP H MQIAERLYTQ
Sbjct: 272 MFVNMTKTSREAKVESVSKKEKAKQRPLALNTVEMLRVASSSLGMGPQHTMQIAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTET Y +NFDL LRQQ ++P W V+ +LS G+++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETNHYHDNFDLKGTLRQQANNPFWAQEVKALLSEGLNRPRKGADAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + A+ +L D WRLY+YIVRHFI T+ D Y Q F++A E F+ K L+ PG
Sbjct: 392 PMRAASEGELGSDGWRLYEYIVRHFIATVSQDCKYLQTTISFTIASEGFSCSGKTLISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT VM W + E++P + GD+ ++ +K+VER+T PPDYLTE++LI+LMEKHGIGTD
Sbjct: 452 FTEVMPWLGIPLEEAMPVCERGDVFTVEEIKLVERQTCPPDYLTEADLITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNI QRNYVTV +GR+L PT+LGIVLVHGY K D ELV PT+R A Q
Sbjct: 512 ASIPVHINNISQRNYVTVENGRKLKPTNLGIVLVHGYYKTDAELVLPTIRGAVEKQ 567
>gi|324504807|gb|ADY42072.1| DNA topoisomerase 3-beta-1 [Ascaris suum]
Length = 858
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/536 (60%), Positives = 397/536 (74%), Gaps = 7/536 (1%)
Query: 32 NGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREAT 91
NG CSV E+ G G V FK+TS CGH+M LDF K+NNW++ DP++LF+ PTEK+EA
Sbjct: 33 NGVCSVSEYDGEFMGRSVRFKVTSTCGHVMSLDFLPKFNNWERTDPVQLFAAPTEKKEAN 92
Query: 92 PKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI----NSPKTVWRAR 147
PKLK+ FLA EA+ CE+LVLWLDCDKEGENICFEV+EAV+ + N V+RA
Sbjct: 93 PKLKMNEFLAFEARGCEYLVLWLDCDKEGENICFEVIEAVKRSLKAPRSGNLMDIVYRAH 152
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FSAIT+KDIK AM NL++PN E+ SVDARQELDLRIGCAFTR+QT++FQGKYGDLD++
Sbjct: 153 FSAITEKDIKGAMRNLIRPNENESLSVDARQELDLRIGCAFTRFQTRYFQGKYGDLDSTC 212
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNL-NGVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCV RHD I FKPEPYWL+ + L +G + +SRG IFD+ C
Sbjct: 213 ISFGPCQTPTLGFCVTRHDLITQFKPEPYWLVQVVLETKDGKELRPEFSRGRIFDRDVCQ 272
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + V+KE V DV + K +PQALNTVE+MRVASSGLGM P +AM AE LYT+
Sbjct: 273 LFLERVKKENIGMVSDVFTKEGRKDRPQALNTVEMMRVASSGLGMSPSNAMSTAEYLYTR 332
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
G++SYPRTET YP NFDL+ LRQQ++ P WG+ V++VLS GI+KPR G+D GDHPPIT
Sbjct: 333 GFISYPRTETNTYPVNFDLIGPLRQQQNDPRWGNIVKQVLSEGITKPRGGEDKGDHPPIT 392
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + + L GDA RLY Y+ +HFI TL Y AK +E+FT+ K LL G
Sbjct: 393 PMR-SDDGSLSGDALRLYQYVTQHFIATLMRPCTYLVTTAKICFGEEVFTISGKRLLDAG 451
Query: 447 FTGVMTWSAMKNES-IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT ++TW A+ ++ +P+ + GD + ++ ++VER TT PD+LTESELISLMEKHGIGTD
Sbjct: 452 FTSILTWQAIGEDTELPELRRGDFLSLKDARIVERATTAPDHLTESELISLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHIN ICQRNYVTV SGRRLVPT LGI LVHGY KID ELV PTMR+ Q
Sbjct: 512 ASIPVHINTICQRNYVTVESGRRLVPTKLGIALVHGYWKIDPELVLPTMRAEVEAQ 567
>gi|198435562|ref|XP_002121520.1| PREDICTED: similar to topoisomerase (DNA) III beta, partial [Ciona
intestinalis]
Length = 827
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/538 (57%), Positives = 398/538 (73%), Gaps = 5/538 (0%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+R AC VHE+ G G+ V FK+TSVCGH+M +DF KYNNW+KVDP ELFS PT K+
Sbjct: 3 KRNQHACPVHEFTGKFKGETVRFKVTSVCGHVMSIDFEGKYNNWEKVDPGELFSAPTIKK 62
Query: 89 EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQI--NINSPKTVWRA 146
EA PKL + FL EA+D +++VLWLDCD+EGENICFEV++ V + + N V+RA
Sbjct: 63 EANPKLNIIKFLEKEARDADYIVLWLDCDREGENICFEVLDIVLPVMRRSGNRQDVVFRA 122
Query: 147 RFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDAS 206
FSAITDKDI AA+ ++ KPN E++ VDARQ+LDLR+GCAFTR+QTK+FQGKYGDLD+S
Sbjct: 123 HFSAITDKDINAALNSVGKPNENESQCVDARQDLDLRLGCAFTRFQTKYFQGKYGDLDSS 182
Query: 207 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNL--NGVAVSVTWSRGHIFDKST 264
LISYGPCQTPTLGFCV+RHDKI++FKPEP+W++D+++ NG ++++ W+RG IF++
Sbjct: 183 LISYGPCQTPTLGFCVDRHDKIQSFKPEPFWMIDVSVKCPNNGPSITLEWARGRIFEQPV 242
Query: 265 CNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY 324
++ +++ K + ++ K+K +PQALNTVE++RVAS+ LG+GP AMQ AE LY
Sbjct: 243 AKMYLSIIKENKIAVIENILKKEKTKQRPQALNTVEMLRVASASLGIGPQQAMQSAEHLY 302
Query: 325 TQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPP 384
T+GY+SYPRTETT YPENFD + L QQ S WGD +LS GI+KPRKG D GDHPP
Sbjct: 303 TRGYISYPRTETTHYPENFDFRSSLSQQTKSRSWGDSASTLLSQGITKPRKGSDAGDHPP 362
Query: 385 ITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLH 444
ITP AT ++ D WRLY+YIVRHFI +L D Y V F +A+E F+ L
Sbjct: 363 ITPMLCATEQEVGHDNWRLYEYIVRHFIASLSPDCTYLHTVINFKLAEESFSCTGNSPLK 422
Query: 445 PGFTGVMTWSAMKN-ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIG 503
PGFT VM W ++ + +++P G ++ ++ERKT+PPDYLTESELI LMEKHGIG
Sbjct: 423 PGFTEVMPWHSINDQQTLPTLTEGGKCEVEKTNLLERKTSPPDYLTESELIMLMEKHGIG 482
Query: 504 TDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
TDASIP HINNI QRNYVTV SGR+L PT+LGI+LVHGY+KID +L PTMRSA Q
Sbjct: 483 TDASIPTHINNIGQRNYVTVISGRKLQPTNLGIMLVHGYKKIDPDLALPTMRSAVEKQ 540
>gi|195565409|ref|XP_002106294.1| GD16199 [Drosophila simulans]
gi|194203668|gb|EDX17244.1| GD16199 [Drosophila simulans]
Length = 821
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/507 (63%), Positives = 382/507 (75%), Gaps = 7/507 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSVCGH+M LDF KYN WDKVDP++LF C TEK+E PK + FLANEA+ C++LVL
Sbjct: 1 MTSVCGHVMSLDFNKKYNCWDKVDPIQLFGCATEKKETNPKQNMRKFLANEARGCDYLVL 60
Query: 113 WLDCDKEGENICFEVMEAVRHQIN-INSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
WLDCDKEGENICFEVM+AV+ IN + S + +RA FSAIT+KDIK AM L PN EA
Sbjct: 61 WLDCDKEGENICFEVMDAVKQVINNVYSDQVTYRAHFSAITEKDIKKAMETLGHPNENEA 120
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+SVDARQELDLRIGCAFTR+QTKFFQ +YGDLD+SLISYGPCQTPTLGFCV+RHD I+TF
Sbjct: 121 KSVDARQELDLRIGCAFTRFQTKFFQDRYGDLDSSLISYGPCQTPTLGFCVKRHDDIQTF 180
Query: 232 KPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
KPE +W L L L G V++ W+RG +F K + V++ K TV V S K
Sbjct: 181 KPESFWHLQL---LAGQPEVTLEWARGRVFKKDIAIMLLNRVKEHKKATVESVASKEAFK 237
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
+KPQALNTVELMR+ SSGLG+GP AMQIAERLYTQGY+SYPRTET QYP NFDL AVL
Sbjct: 238 SKPQALNTVELMRICSSGLGIGPFQAMQIAERLYTQGYISYPRTETNQYPTNFDLPAVLH 297
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRH 410
+ S D+G+ R +L + I PRKGKD GDHPPITP KL R+ D D WR+Y++I RH
Sbjct: 298 VLKPSADFGEEARSILGD-IQTPRKGKDAGDHPPITPMKLGNRSDFDRDTWRVYEFICRH 356
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM-KNESIPDFKPGDL 469
F+GT+ DL Y AK V E F+ A L+ GFT VMTWSA K+E P F G
Sbjct: 357 FMGTVSRDLKYRVTTAKLRVGMETFSCTASVLIDAGFTKVMTWSAFGKDEPQPPFVQGTE 416
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRL 529
+ I V+++E +T PPDYLTESELI+LME+HGIGTDASIPVHINNICQRNYV + +GR+L
Sbjct: 417 VAINDVRLIESQTGPPDYLTESELITLMEEHGIGTDASIPVHINNICQRNYVHIENGRKL 476
Query: 530 VPTSLGIVLVHGYQKIDRELVEPTMRS 556
+PT+LGIVLVHGYQKID ELV PTMR+
Sbjct: 477 MPTTLGIVLVHGYQKIDPELVLPTMRT 503
>gi|307133770|ref|NP_001120391.2| topoisomerase (DNA) III beta isoform 2 [Xenopus (Silurana)
tropicalis]
Length = 845
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/536 (59%), Positives = 386/536 (72%), Gaps = 18/536 (3%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVHE+ G G V FKMTSVCGH+M LDF KYNNWDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHEYTGSFMGQTVRFKMTSVCGHVMSLDFIGKYNNWDKVDPAELFSKAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++A+ +N +TV+RA+
Sbjct: 92 ANPKLSMVKFLQVEGRGCDYVVLWLDCDKEGENICFEVLDAIHPVMNRAHGGERTVYRAK 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +PN EA SVDAR +QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDTDILNAMNRLGEPNKNEALSVDAR-------------FQTKYFQGKYGNLDSSL 198
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L + ++ + + W R +FD+
Sbjct: 199 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQVKVSRGQENPLILDWDRVRVFDREIAQ 258
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + K V V K+K +PQALNTVE++RVASS LGMGP H MQIAERLYTQ
Sbjct: 259 MFINITKTAKEAQVESVSKKEKAKQRPQALNTVEMLRVASSALGMGPQHTMQIAERLYTQ 318
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ ++P W D V+ +L+ GI++PRKG D GDHPPIT
Sbjct: 319 GYISYPRTETTHYPENFDLKGTLRQQANNPFWADMVKTLLAEGINRPRKGTDAGDHPPIT 378
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + AT +L GDAWRLY+YI RHFI T+ D Y Q FSV E FT K ++ PG
Sbjct: 379 PMRSATEAELGGDAWRLYEYITRHFIATISHDCKYLQTSIAFSVGPEKFTTTCKEVISPG 438
Query: 447 FTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W + K ES + GD + +K++E++T PPDYLTE+ELISLME+HGIGTD
Sbjct: 439 FTEIMPWQGIPKEESFQPCERGDKFSVDEMKLMEKQTCPPDYLTEAELISLMERHGIGTD 498
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV SGRRL PTSLGIVLVHGY KID ELV PT+RSA Q
Sbjct: 499 ASIPVHINNICQRNYVTVESGRRLKPTSLGIVLVHGYYKIDPELVLPTIRSAVEKQ 554
>gi|327280846|ref|XP_003225162.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 2 [Anolis
carolinensis]
Length = 851
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/536 (59%), Positives = 390/536 (72%), Gaps = 16/536 (2%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVHE+ G G FKMTSVCGH+M LDF KYNNWDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHEYTGSFIGQSSHFKMTSVCGHVMTLDFIGKYNNWDKVDPAELFSKAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++A+ +N S + V+RA+
Sbjct: 92 ANPKLNMVKFLQVEGRGCDYVVLWLDCDKEGENICFEVLDAIVPIMNKPRGSERVVYRAK 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM +L +PN EA SVDARQE +QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDTDICNAMNHLGEPNHNEALSVDARQE-----------FQTKYFQGKYGNLDSSL 200
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L ++ +++ W R IFD+
Sbjct: 201 ISFGPCQTPTLGFCVERHDKIQSFKPEMYWVLQAKVSHEKDSCLTLDWDRVRIFDREIAQ 260
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + K V V KSK +P ALNTVE++RVAS+ LGMGP HAMQIAERLYTQ
Sbjct: 261 LFLNITKAVKDAKVESVSRKEKSKQRPLALNTVEMLRVASAALGMGPQHAMQIAERLYTQ 320
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ ++P W + V+ +L+ GI+KPRKG D GDHPPIT
Sbjct: 321 GYISYPRTETTHYPENFDLKGSLRQQANNPYWAETVKALLAEGINKPRKGHDAGDHPPIT 380
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + A+ +L GD WRL++YI RHFI T+ D Y Q SV E FT K ++ PG
Sbjct: 381 PMRAASEAELGGDGWRLFEYITRHFIATVSADCKYLQTTITCSVGTERFTCIGKTVILPG 440
Query: 447 FTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD+ P+ +K++E++T PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 441 FTEIMPWQSIPPEESLPSCERGDVFPVSEIKLLEKQTNPPDYLTEAELITLMEKHGIGTD 500
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV +GRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 501 ASIPVHINNICQRNYVTVENGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 556
>gi|395517223|ref|XP_003762778.1| PREDICTED: DNA topoisomerase 3-beta-1 [Sarcophilus harrisii]
Length = 801
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/506 (62%), Positives = 380/506 (75%), Gaps = 5/506 (0%)
Query: 61 MGLDFTSKYNNWDKVDPLELFS-CPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
M LDFT KYN+WD+VDP ELFS PTEK+EA PKL + FL E + C+++VLWLDCDKE
Sbjct: 1 MTLDFTGKYNHWDRVDPAELFSKAPTEKKEANPKLSMVKFLQVEGRSCDYIVLWLDCDKE 60
Query: 120 GENICFEVMEAVRHQINI--NSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDAR 177
GENICFEV++AV +N + KTV+RARFS+ITD DI AM L +P+ EA SVDAR
Sbjct: 61 GENICFEVLDAVLPVMNKPRGTEKTVFRARFSSITDTDICNAMGRLGEPDHNEALSVDAR 120
Query: 178 QELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYW 237
QELDLRIGCAFTR+QTK+FQGKYG+LD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW
Sbjct: 121 QELDLRIGCAFTRFQTKYFQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPELYW 180
Query: 238 LLDLTLNLNG-VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQAL 296
+L +N + +V + W R +FD+ +F EK V K+K +P AL
Sbjct: 181 VLQAKINPDKESSVLLDWDRVRVFDREIAQMFLNITRTEKEAKVEGTSRKEKAKQRPLAL 240
Query: 297 NTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSP 356
NTVE++RVASS LGMGP HAMQIAERLYTQGY+SYPRTETT YPENFDL L+QQ + P
Sbjct: 241 NTVEMLRVASSSLGMGPQHAMQIAERLYTQGYISYPRTETTHYPENFDLKGSLKQQANHP 300
Query: 357 DWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLC 416
W V+++L++GI++PRKG D GDHPPITP + AT +L GDAWRLY+YI RHFI T+
Sbjct: 301 YWAQTVKQLLADGINRPRKGHDAGDHPPITPMRSATEAELGGDAWRLYEYITRHFIATVS 360
Query: 417 GDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM-KNESIPDFKPGDLIPIQSV 475
D Y Q F + E FT K L+ PGFT +M W ++ ES+P + GD + V
Sbjct: 361 YDCKYLQNTISFQIGPERFTCSGKTLISPGFTEIMPWQSIPPEESLPTCQKGDTFALSEV 420
Query: 476 KMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLG 535
KM+E++T+PPDYLTE+ELI+LME+HGIGTDASIPVHINNICQRNYVTV SGRRL PT+LG
Sbjct: 421 KMLEKQTSPPDYLTEAELITLMERHGIGTDASIPVHINNICQRNYVTVESGRRLRPTNLG 480
Query: 536 IVLVHGYQKIDRELVEPTMRSAYRVQ 561
IVLVHGY KID ELV PT+RSA Q
Sbjct: 481 IVLVHGYYKIDAELVLPTIRSAVEKQ 506
>gi|441620017|ref|XP_004088632.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-beta-1
[Nomascus leucogenys]
Length = 803
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/519 (60%), Positives = 380/519 (73%), Gaps = 5/519 (0%)
Query: 48 LVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKREATPKLKLPAFLANEAKD 106
L++ + S+ I + KYN WDKVDP ELFS PTEK+EA PKL + FL E +
Sbjct: 5 LMVAEKPSLAQSIAKILSRGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRG 64
Query: 107 CEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRARFSAITDKDIKAAMWNLV 164
C+++VLWLDCDKEGENICFEV++AV +N KTV++ARFS+I D DI AM L
Sbjct: 65 CDYIVLWLDCDKEGENICFEVLDAVLPVMNKAHGGEKTVFQARFSSIMDTDICNAMACLG 124
Query: 165 KPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVER 224
+P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+SLIS+GPCQTPTLGFCVER
Sbjct: 125 EPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSLISFGPCQTPTLGFCVER 184
Query: 225 HDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV 283
HDKI++FKPE YW+L +N + ++ + W R +FD+ +F + EK V
Sbjct: 185 HDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEAT 244
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQGY+SYPRTETT YPENF
Sbjct: 245 SRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENF 304
Query: 344 DLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRL 403
DL LRQQ + P W D V+ +L+ GI++PRKG D GDHPPITP K AT +L GDAWRL
Sbjct: 305 DLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPITPMKSATEAELGGDAWRL 364
Query: 404 YDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIP 462
+YI RHFI T+ D Y Q F + E+FT K +L PGFT +M W ++ ES+P
Sbjct: 365 XEYITRHFIATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPGFTEIMPWQSVPLEESLP 424
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT 522
+ GD P+ VKM+E++T+PPDYLTE+ELI+LMEKHGIGTDASIPVHINNICQRNYVT
Sbjct: 425 TCQRGDTFPVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVT 484
Query: 523 VTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
V SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 485 VESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 523
>gi|195996011|ref|XP_002107874.1| hypothetical protein TRIADDRAFT_49643 [Trichoplax adhaerens]
gi|190588650|gb|EDV28672.1| hypothetical protein TRIADDRAFT_49643 [Trichoplax adhaerens]
Length = 841
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 295/528 (55%), Positives = 382/528 (72%), Gaps = 1/528 (0%)
Query: 35 CSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKL 94
C V+E+ G G F +TSVCGH+ LDF +YNNWD VDP++L+ +K++A P
Sbjct: 36 CQVYEYSGTFHGQQARFSVTSVCGHVYSLDFLPQYNNWDAVDPVDLYDAEVKKKDANPDQ 95
Query: 95 KLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDK 154
+ FL +E + ++LVLWLDCD+EGENICFEV++ V+ + +S + ++RA+FSAITDK
Sbjct: 96 NIVKFLKHEGQGIDYLVLWLDCDREGENICFEVIDIVKPVMRNSSSQNIFRAKFSAITDK 155
Query: 155 DIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQ 214
DI AM L+ PN EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+SLISYGPCQ
Sbjct: 156 DIFRAMETLITPNKNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSLISYGPCQ 215
Query: 215 TPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEK 274
TPTLGFCVERHDKI +F+PE YW +D+ + N ++ W+R IFDK+ ++F + ++
Sbjct: 216 TPTLGFCVERHDKINSFEPEKYWKIDVKVRHNNSTFALQWNRVRIFDKNVASMFCEDIKA 275
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRT 334
++ V ++ KSK KP ALNTVE++R ASSGL +GPHH M +AERLY QGY+SYPRT
Sbjct: 276 VTRTKILKVTTTQKSKQKPIALNTVEMLRKASSGLNIGPHHTMALAERLYIQGYISYPRT 335
Query: 335 ETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRT 394
ETT YP+NFD +L + S D GD V+ +L +G SKP+KG+D GDHPPITP K+A R
Sbjct: 336 ETTTYPQNFDFRDLLGKLSSHEDLGDTVKSLLKDGYSKPKKGQDAGDHPPITPMKVAGRN 395
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
+L GD+WRLYDYIVRH++G++ D YTQ ++ E FT + PGF VM W
Sbjct: 396 ELSGDSWRLYDYIVRHYLGSVMEDCRYTQTTYMVEISKESFTCSGAVVTSPGFLSVMNWL 455
Query: 455 AM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
+ +++P+ G ++ I K+ E +T+PPDYLTESELI+LMEKHGIGTDASIPVHIN
Sbjct: 456 QQDEGQNLPNLDRGAVLEITEAKLSEHQTSPPDYLTESELITLMEKHGIGTDASIPVHIN 515
Query: 514 NICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
NIC+RNYV +T RRL PT LGIVL+HGY KID +L PTMR+ Q
Sbjct: 516 NICERNYVKITGSRRLQPTQLGIVLIHGYHKIDSDLALPTMRADVEKQ 563
>gi|444732291|gb|ELW72593.1| DNA topoisomerase 3-beta-1 [Tupaia chinensis]
Length = 946
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 333/623 (53%), Positives = 401/623 (64%), Gaps = 95/623 (15%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTS----------------------- 67
+NGACSVHE+ G G V FKMTSVCGH+M LDF +
Sbjct: 32 LNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFIAVKGECSECRRACPQRSLSSCPCV 91
Query: 68 -----------------------------KYNNWDKVDPLELFS-CPTEKREATPKLKLP 97
KYN WDKVDP ELFS PTEK+EA PKL +
Sbjct: 92 TDNSSDNGVTKLGCVAKHVDPTLYLQLAGKYNKWDKVDPAELFSQAPTEKKEANPKLNMV 151
Query: 98 AFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRARFSAITDKD 155
FL E + C+++VLWLDCDKEGENICFEV++AV +N S KTV+RARFS+ITD D
Sbjct: 152 KFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKAHGSEKTVFRARFSSITDTD 211
Query: 156 IKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQT 215
I AM L +P+ EA SVDARQELDLRIG F QTK+FQGKYGDLD+SLIS+GPCQT
Sbjct: 212 ICNAMSRLGEPDHNEALSVDARQELDLRIGRGF---QTKYFQGKYGDLDSSLISFGPCQT 268
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCNVFFKAVEK 274
PTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +FD+ +F +
Sbjct: 269 PTLGFCVERHDKIQSFKPETYWVLQAKVNADKDRSLLLDWDRVRVFDREIAQMFLNLTKS 328
Query: 275 EKHVTV--------------------------VDVQS-STKSKTKPQALNTVELMRVASS 307
EK V V+ S K+K +P ALNTVE++RVASS
Sbjct: 329 EKEAQVRLPRRAFFGVGTGLGDLCLEEQLVPKVEAASRKEKAKQRPLALNTVEMLRVASS 388
Query: 308 GLGMGPHHAMQIAERLYTQG--------YVSYPRTETTQYPENFDLVAVLRQQESSPDWG 359
LGMGP HAMQ AERLYTQG Y+SYPRTETT YPENFDL A LRQQ + P W
Sbjct: 389 ALGMGPQHAMQTAERLYTQGGPTTHTQGYISYPRTETTHYPENFDLKASLRQQANHPHWA 448
Query: 360 DHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDL 419
D V+ +L+ GI++PRKG D GDHPPITP + AT +L GDAWRLY+YI RHFI T+ D
Sbjct: 449 DTVKRLLAEGINRPRKGHDAGDHPPITPMRSATEAELGGDAWRLYEYITRHFIATVSYDC 508
Query: 420 VYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMV 478
Y Q F + E+F+ K ++ PGFT +M W ++ ES+P + GD + VKM+
Sbjct: 509 KYLQSSISFRIGPELFSCSGKTVISPGFTEIMPWQSVPLEESLPTCQRGDTFAVGEVKML 568
Query: 479 ERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
E++T+PPDYLTE+ELI+LMEKHGIGTDASIPVHINN+CQRNYVTV SGRRL PT+LGIVL
Sbjct: 569 EKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNVCQRNYVTVESGRRLRPTNLGIVL 628
Query: 539 VHGYQKIDRELVEPTMRSAYRVQ 561
VHGY KID ELV PT+RSA Q
Sbjct: 629 VHGYYKIDAELVLPTIRSAVEKQ 651
>gi|449669651|ref|XP_002153907.2| PREDICTED: DNA topoisomerase 3-beta-1-like [Hydra magnipapillata]
Length = 818
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 303/516 (58%), Positives = 382/516 (74%), Gaps = 4/516 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREA 90
++ AC +HE+ G G+ + FKMTSVCGH+M LDF +NNWD V+P+ELFS T+K EA
Sbjct: 32 VSSACPIHEFNGSFLGENIKFKMTSVCGHVMSLDFKGYFNNWDAVEPIELFSAATQKIEA 91
Query: 91 TPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSA 150
KL + L K+ +FLVLWLDCDKEGENICFEV++ V+ + ++ + ++RA FSA
Sbjct: 92 QEKLNIVKHLKVAGKEVDFLVLWLDCDKEGENICFEVIDCVKPFMKQSNKQMIYRAHFSA 151
Query: 151 ITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISY 210
ITDKDIK AM NL PN E+ SVDARQELDLR+GCAFTR+QTK+FQGKYG+LD+SLISY
Sbjct: 152 ITDKDIKNAMHNLKDPNKNESLSVDARQELDLRVGCAFTRFQTKYFQGKYGNLDSSLISY 211
Query: 211 GPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFK 270
GPCQTPTL FCV RHD I++F+PE YW + +L N + + W R IFD+ N+FF
Sbjct: 212 GPCQTPTLAFCVARHDIIQSFQPETYWKIQASLKPN---IILDWERVRIFDREIANLFFN 268
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVS 330
V+ K TVV +Q K K P ALNTVEL+RVASSGLG+GP M IAE+LYTQG++S
Sbjct: 269 LVKGAKEATVVSIQEVEKKKAPPIALNTVELLRVASSGLGIGPQQTMHIAEKLYTQGFIS 328
Query: 331 YPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKL 390
YPRTETT YP++FDL+ L+ Q + +G++V ++LS GI+KPRKG D GDHPPITP +L
Sbjct: 329 YPRTETTNYPKSFDLIGPLKLQCGNRSFGEYVSQLLSKGINKPRKGLDAGDHPPITPMRL 388
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
A+ L D W++YDYIV+HFI T+ + Y K FS+ E+F+ K ++ PGFT V
Sbjct: 389 ASPNDLSSDMWKVYDYIVKHFISTVSYECCYKVKTITFSINKEVFSCTGKTVIDPGFTYV 448
Query: 451 MTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
M W A+ K ES+P F+ + + +K+VE TTPPDYLTESELISLMEKHGIGTDASI
Sbjct: 449 MDWQAIPKEESLPSFEINQSLETKDLKLVECLTTPPDYLTESELISLMEKHGIGTDASIS 508
Query: 510 VHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKI 545
VHINNICQRNYVTVT+GR+L+PT LGIVLVHGY K+
Sbjct: 509 VHINNICQRNYVTVTTGRKLIPTPLGIVLVHGYHKL 544
>gi|170583127|ref|XP_001896443.1| DNA topoisomerase III beta-1 [Brugia malayi]
gi|158596370|gb|EDP34727.1| DNA topoisomerase III beta-1, putative [Brugia malayi]
Length = 858
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 310/536 (57%), Positives = 386/536 (72%), Gaps = 7/536 (1%)
Query: 32 NGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREAT 91
N CSV E+ G G +FK+TS CGHIM LDF K NNW+KVDP+ LFS T K+EA
Sbjct: 35 NNVCSVSEYCGQFQGQSAIFKVTSTCGHIMSLDFPPKMNNWEKVDPVMLFSSSTAKKEAN 94
Query: 92 PKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPK----TVWRAR 147
PK+++ +LA+EAK C+FLVLWLDCDKEGENICFEV+EAVR+ I + V+RA
Sbjct: 95 PKMRMNEYLASEAKGCDFLVLWLDCDKEGENICFEVIEAVRNSIKKSKTGDIMGNVYRAH 154
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FSAIT KDIK+AM NL +PNI E+ SVDARQELDLRIGCAFTR+QT++FQGKYG+LD++
Sbjct: 155 FSAITAKDIKSAMRNLGRPNINESLSVDARQELDLRIGCAFTRFQTRYFQGKYGNLDSTT 214
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCV RHD I FKPEPYW+L + G + T RG IFDK C
Sbjct: 215 ISFGPCQTPTLGFCVTRHDLITQFKPEPYWILVAIFETSAGDTLKPTHVRGRIFDKDVCQ 274
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+FF ++K+ VVDV SS K +PQALNTVEL++VASSGLG+ P M AE LYT+
Sbjct: 275 LFFDRIKKQNQGVVVDVISSELRKERPQALNTVELLKVASSGLGLSPTQTMSTAEYLYTR 334
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
G++SYPRTETT YP NFD LR Q++ W D V+++LS GI+KPR G+D GDHPPI+
Sbjct: 335 GFISYPRTETTAYPSNFDFSEALRHQQNDSRWKDIVKKLLSEGITKPRNGEDKGDHPPIS 394
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + L GDA ++YDY+ +HFI TL +Y K K ++A+E+F ++K +++ G
Sbjct: 395 PLR-GNDGSLTGDALKIYDYVTQHFIATLMQPCIYLVKSIKINIANEIFIAKSKCVINLG 453
Query: 447 FTGVMTWSAMKNESIP-DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
+T +M W ++ ++ + G + ++ K+ E TTPPDYLTESELISLMEKHGIGTD
Sbjct: 454 YTEIMVWQKIEEDTQNYNIVKGSKLNLKDAKICEYATTPPDYLTESELISLMEKHGIGTD 513
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHI+NICQRNYVTV S RRL PT LGI LVHGY +ID ELV PTMRS Q
Sbjct: 514 ASIPVHISNICQRNYVTVESKRRLKPTKLGIALVHGYWRIDSELVLPTMRSEVESQ 569
>gi|390351189|ref|XP_795949.3| PREDICTED: DNA topoisomerase 3-beta-1 [Strongylocentrotus
purpuratus]
Length = 954
Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust.
Identities = 294/488 (60%), Positives = 367/488 (75%), Gaps = 5/488 (1%)
Query: 78 LELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQIN- 136
+LF+ PTE++EA P L +P FLA E K C++LVLWLDCDKEGENICFEV+ V+ +
Sbjct: 173 FQLFAAPTERKEANPNLHMPKFLAIEGKGCDYLVLWLDCDKEGENICFEVISCVQGVMTR 232
Query: 137 -INSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKF 195
+ + ++RA+FSAITDKDI+ AM LV+PN EA SVDARQELDLRIGCAFTR+QTK+
Sbjct: 233 PVGREQVIFRAKFSAITDKDIRQAMNTLVEPNENEALSVDARQELDLRIGCAFTRFQTKY 292
Query: 196 FQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL-NLNGVAVSVTW 254
FQGKYGDLD++LISYGPCQTPTLGFCV RHDKI++FKPEP+W++ + + + +G +++ W
Sbjct: 293 FQGKYGDLDSTLISYGPCQTPTLGFCVNRHDKIQSFKPEPFWVIQIQVTHESGRKLNLDW 352
Query: 255 SRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPH 314
R +FD+ +F ++ +K + V K+K +PQALNTVELMRVASS LGM PH
Sbjct: 353 DRVRVFDREVAQMFLNIIKTQKDARITSVSQKEKAKQRPQALNTVELMRVASSSLGMSPH 412
Query: 315 HAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPR 374
HAMQIAERLY QGY+SYPRTETT YPE+FDL LRQQ S+P W V+ +L +KPR
Sbjct: 413 HAMQIAERLYIQGYISYPRTETTSYPESFDLKGTLRQQMSAP-WRSEVKVLLDGEFTKPR 471
Query: 375 KGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM 434
KG DVGDHPPITP + A +++ G+AWRLY+YI RHFI T+ D Y + + +E
Sbjct: 472 KGTDVGDHPPITPMRAANESEVGGEAWRLYEYIARHFIATVSPDCRYLLTTIRLMIGEEG 531
Query: 435 FTMEAKYLLHPGFTGVMTWSAMKN-ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESEL 493
F+ K L+ GFT VM W A+++ E++P+ GD+ I+ K+ ER+T+PPDYLTESEL
Sbjct: 532 FSCTGKTLISDGFTAVMPWQAIQDEENLPNVTKGDMCSIEEAKLSERQTSPPDYLTESEL 591
Query: 494 ISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPT 553
ISLMEKHG+GTDASIPVHI NICQRNYV V SGRRLVPT LGIVLVHGYQKID +L PT
Sbjct: 592 ISLMEKHGVGTDASIPVHIENICQRNYVKVESGRRLVPTRLGIVLVHGYQKIDPDLSLPT 651
Query: 554 MRSAYRVQ 561
MRSA Q
Sbjct: 652 MRSAVEEQ 659
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 112/169 (66%), Gaps = 28/169 (16%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREA 90
MNGACSVHE+ G G FKMTSVCGH+ GLDF ++NNWDKVDP
Sbjct: 32 MNGACSVHEYTGTFRGQQAKFKMTSVCGHVHGLDFHPRFNNWDKVDP------------- 78
Query: 91 TPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQIN--INSPKTVWRARF 148
K C++LVLWLDCDKEGENICFEV+ V+ + + ++RA+F
Sbjct: 79 -------------GKGCDYLVLWLDCDKEGENICFEVISCVQGVMTRPTGREQVIFRAKF 125
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQ 197
SAITDKDI+ AM LV+PN EA SVDARQELDLRIGCAFTR+QTK+FQ
Sbjct: 126 SAITDKDIRQAMNTLVEPNENEALSVDARQELDLRIGCAFTRFQTKYFQ 174
>gi|308480547|ref|XP_003102480.1| hypothetical protein CRE_04022 [Caenorhabditis remanei]
gi|308261212|gb|EFP05165.1| hypothetical protein CRE_04022 [Caenorhabditis remanei]
Length = 867
Score = 622 bits (1604), Expect = e-175, Method: Compositional matrix adjust.
Identities = 308/536 (57%), Positives = 373/536 (69%), Gaps = 7/536 (1%)
Query: 32 NGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREAT 91
NG CSV E+ G G FK+TS CGH+M LDF +K+NNW++VDP EL+S P K EA
Sbjct: 34 NGVCSVSEYDGQFNGKNAKFKVTSTCGHVMSLDFPAKFNNWERVDPAELYSAPAVKIEAN 93
Query: 92 PKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP---KTVWRARF 148
PK+K+ FLA+EAK+ ++LVLWLDCDKEGENICFEV++AV+ + N P V+RA F
Sbjct: 94 PKMKMNEFLASEAKNADYLVLWLDCDKEGENICFEVVDAVKSAMFKNRPDYMSDVYRAHF 153
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
SAIT+KDIKAAM NL +P+ A SVDARQELDLRIGC+FTR+QTKFFQGKYGDLD+++I
Sbjct: 154 SAITEKDIKAAMKNLSRPDQNMALSVDARQELDLRIGCSFTRFQTKFFQGKYGDLDSNVI 213
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVF 268
SYGPCQTPTLGFCV RHD+I FKPE YW+L T + + S W RG IFD +F
Sbjct: 214 SYGPCQTPTLGFCVTRHDQIVQFKPEAYWVLKTTFSCDSQTFSPEWQRGRIFDAEIARLF 273
Query: 269 FKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGY 328
++K VVDV K +P ALNTVELMRVASS LG+ P M +AE LYTQGY
Sbjct: 274 VDRIKKSHSGVVVDVSKKEARKERPCALNTVELMRVASSSLGLSPSTTMHVAESLYTQGY 333
Query: 329 VSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPT 388
+SYPRTETT YP NFDL L+ WG V +VL+ GI +P+ G D GDHPPITP
Sbjct: 334 ISYPRTETTAYPANFDLNGTLKILSGDRKWGSVVSQVLAEGIKRPKSGVDKGDHPPITPM 393
Query: 389 KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
+ A L GD R+Y+Y+ +HF+ TL VY K +E FT++ K ++ PGFT
Sbjct: 394 R-ANTGNLSGDMARIYEYVSQHFVATLMKQCVYEVTTVKMECGEEQFTIQGKNVIDPGFT 452
Query: 449 GVMTWSAMKNE-SIPDF--KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
VM W +++ E S+P + G I +Q ++ R+TTPP YLTESELI+LMEKHGIGTD
Sbjct: 453 AVMPWLSVEEECSVPKSLQQIGARIELQDAQIQARETTPPGYLTESELITLMEKHGIGTD 512
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHIN I QRNYVTV SGRRLVPT LG LV GY K+D ELV PTMRS Q
Sbjct: 513 ASIPVHINTITQRNYVTVESGRRLVPTRLGQCLVRGYWKVDPELVLPTMRSELEEQ 568
>gi|256052775|ref|XP_002569927.1| prokaryotic DNA topoisomerase [Schistosoma mansoni]
gi|360043203|emb|CCD78615.1| putative prokaryotic DNA topoisomerase [Schistosoma mansoni]
Length = 1159
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 303/538 (56%), Positives = 384/538 (71%), Gaps = 18/538 (3%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREA 90
NGACS+HEW G + V FKMTSVCGH+M +DF S+YN+WDKVDP ELF P EK+EA
Sbjct: 346 FNGACSIHEWTGQFMSEQVRFKMTSVCGHVMNVDFLSRYNSWDKVDPAELFVAPIEKKEA 405
Query: 91 TPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSA 150
PKLK+ FL +EAK+ L+LWLDCDKEGENICFEV+ V H + I+ PK + RA FSA
Sbjct: 406 NPKLKMVDFLRHEAKNAGILILWLDCDKEGENICFEVINCV-HSVMIH-PKRILRAHFSA 463
Query: 151 ITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISY 210
+TD+++ AM NL +PN EA SVDARQELDLRIGCAFTR+QTKFFQGKYGDL+++L+S+
Sbjct: 464 VTDQELHGAMKNLREPNKHEALSVDARQELDLRIGCAFTRFQTKFFQGKYGDLNSNLVSF 523
Query: 211 GPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-SRGHIFDKSTCNVFF 269
GPCQTPTLGFCV+RHD+I++FKPE +W + L ++ W S G F +C F
Sbjct: 524 GPCQTPTLGFCVKRHDQIQSFKPETFWRIKECL------FAIKWISVGTFF---SCRKLF 574
Query: 270 --KAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQG 327
+ + +TVV V K K +PQ LNTVE++RVAS+GLG+GPH AM IAERLYT G
Sbjct: 575 ISQFLMGRIVLTVVQVSVKQKIKPRPQGLNTVEMLRVASAGLGIGPHSAMAIAERLYTSG 634
Query: 328 YVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITP 387
Y++YPRTETT YP FDL +L+QQ ++P WGD RE+L +G++ PR G D GDHPPI P
Sbjct: 635 YINYPRTETTAYPNTFDLRGLLQQQVNNPLWGDLAREILHSGLTPPRAGHDAGDHPPIAP 694
Query: 388 TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVAD-EMFTMEAKYLLHPG 446
+ A+ +L +A+RLY+YI +HFI T+ D Y Q SV D E+FT+ ++ PG
Sbjct: 695 MRFASSQELGHEAYRLYEYITQHFIATIMPDCCYEQTQVIVSVGDGELFTISGLKVVEPG 754
Query: 447 FTGVMTWSAMKNESIPD--FKPG-DLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIG 503
FT ++TW A++++S+P G ++ ++E +T PPDYLTESELI+ ME+HGIG
Sbjct: 755 FTRILTWQAVEDKSLPKSLLNQGYQFNLLEEPSLIEGQTGPPDYLTESELITAMERHGIG 814
Query: 504 TDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
TDASIP HI NI QR YV + SGR+L PT LGIVLVHGYQ ID ELV P MR A Q
Sbjct: 815 TDASIPTHIENIVQRGYVQLLSGRKLQPTPLGIVLVHGYQTIDAELVLPHMRRAVEEQ 872
>gi|341892314|gb|EGT48249.1| hypothetical protein CAEBREN_32330 [Caenorhabditis brenneri]
Length = 1276
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 305/537 (56%), Positives = 373/537 (69%), Gaps = 8/537 (1%)
Query: 32 NGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREAT 91
N CSV E+ G G FK+TS CGH+M LDF +K+NNW++VDP EL+S P K EA
Sbjct: 578 NNVCSVSEYDGQFNGRNAKFKVTSTCGHVMSLDFPAKFNNWERVDPAELYSAPAVKIEAN 637
Query: 92 PKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEV-MEAVRHQININSP---KTVWRAR 147
PK+K+ FLA+EAK ++LVLWLDCDKEGENICFEV ++AV+ + N P V+RA
Sbjct: 638 PKMKMNDFLASEAKTADYLVLWLDCDKEGENICFEVVIDAVKSAMFKNRPDFMNDVYRAH 697
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FSAIT+KDIKAAM +L +P+ A SVDARQELDLRIGC+FTR+QTKFFQGKYGDLD+++
Sbjct: 698 FSAITEKDIKAAMKSLGRPDQNMALSVDARQELDLRIGCSFTRFQTKFFQGKYGDLDSNV 757
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNV 267
ISYGPCQTPTLGFCV RHD+I FKPE YW+L T + + S W RG IFD +
Sbjct: 758 ISYGPCQTPTLGFCVTRHDQIVQFKPEAYWVLKTTFSCDSQTFSPEWQRGRIFDAEIARL 817
Query: 268 FFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQG 327
F ++K V DV K +P ALNTVELMRVASS LGM P M +AE LYTQG
Sbjct: 818 FVDRIKKSHSGVVTDVSKKEARKERPCALNTVELMRVASSSLGMSPSTTMHVAESLYTQG 877
Query: 328 YVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITP 387
Y+SYPRTETT YP NFDL L+ WG V +VL+ GI +P+ G D GDHPPITP
Sbjct: 878 YISYPRTETTAYPANFDLNGTLKILSGDRKWGSVVSQVLAEGIKRPKSGVDKGDHPPITP 937
Query: 388 TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
+ A L GD R+Y+Y+ +HF+ TL VY K + DE FT++ K ++ PGF
Sbjct: 938 MR-ANTGGLSGDMARIYEYVSQHFVATLMKQCVYEVTTVKMACGDEQFTIQGKNVIDPGF 996
Query: 448 TGVMTWSAMKNE-SIPDF--KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGT 504
T VM W ++++E S+P + G I +Q +++ R+TTPP YLTE+ELI+LMEKHGIGT
Sbjct: 997 TAVMPWLSVEDECSVPKSLQQVGAKIELQDAQILARETTPPGYLTEAELITLMEKHGIGT 1056
Query: 505 DASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
DASIPVHIN I QRNYVTV SGRRLVPT LG LV GY K+D ELV PTMR+ Q
Sbjct: 1057 DASIPVHINTITQRNYVTVESGRRLVPTRLGQCLVRGYWKVDPELVLPTMRAELEEQ 1113
>gi|302765975|ref|XP_002966408.1| hypothetical protein SELMODRAFT_168492 [Selaginella moellendorffii]
gi|300165828|gb|EFJ32435.1| hypothetical protein SELMODRAFT_168492 [Selaginella moellendorffii]
Length = 871
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 288/520 (55%), Positives = 375/520 (72%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
VHE+ G G +K+TSV GH+ G+DF KY NW+ DPL+LF PT K EA PK +
Sbjct: 20 VHEFDGTFRGFQAHYKVTSVIGHVYGIDFPPKYQNWELTDPLDLFGAPTLKNEANPKAHV 79
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L EA+ C+ LVLWLDCD+EGENICFEVME + S + V+RARFSA+++KD+
Sbjct: 80 CKHLRQEARGCDSLVLWLDCDREGENICFEVMENALPVMKKRSGQQVFRARFSAVSEKDV 139
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTP 216
K AM +LV+PN EA +VDARQE+DL++G AFTR+QT+FFQGKYG+LD+S+IS+GPCQTP
Sbjct: 140 KTAMSSLVEPNQNEALAVDARQEIDLKVGVAFTRFQTRFFQGKYGNLDSSVISFGPCQTP 199
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEK 276
TLGFCVERH +I TF P+P+W L L+ G ++ + W RG +F+++T V KAV K
Sbjct: 200 TLGFCVERHTQIITFVPKPFWTLHPRLSKGGHSLQLDWERGRVFEQATALVPQKAVLKSG 259
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTET 336
+ V+DV + K +P LNTV +++VAS+ LGMGPHHAMQIAERLY QGY+SYPRTE+
Sbjct: 260 SLKVLDVSQKEERKARPTGLNTVNMLKVASTALGMGPHHAMQIAERLYVQGYISYPRTES 319
Query: 337 TQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQL 396
T YP +FD+ L + P +GD+ R +++ G+ P+ G D GDHPPITP + T ++L
Sbjct: 320 TAYPASFDVKESLLPLGNHPVFGDYARSLIAAGVRAPKSGTDAGDHPPITPMRSGTESEL 379
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM 456
GDAWRLYDYI RHF+G++ D Y + FS E+FT K + PGFT M W A+
Sbjct: 380 GGDAWRLYDYISRHFLGSVSPDCKYKRTKVTFSGGGEVFTCSGKVVTSPGFTIAMPWMAV 439
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
+E++P F G+ +P V++ + +T+PPDYLTES+LISLMEKHGIGTDASIPVHINNIC
Sbjct: 440 TDENLPAFTIGESLPCSEVELYQGRTSPPDYLTESDLISLMEKHGIGTDASIPVHINNIC 499
Query: 517 QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
QRNYV V +GRRLVPT+LGI L+ GYQ ID +L P +RS
Sbjct: 500 QRNYVQVQTGRRLVPTALGITLIRGYQTIDADLCLPDIRS 539
>gi|392892249|ref|NP_001254381.1| Protein Y48C3A.14, isoform a [Caenorhabditis elegans]
gi|371571205|emb|CCF23416.1| Protein Y48C3A.14, isoform a [Caenorhabditis elegans]
Length = 869
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 307/538 (57%), Positives = 376/538 (69%), Gaps = 9/538 (1%)
Query: 32 NGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREAT 91
NG CSV E+ G G FK+TS CGH+M LDF K+NNW++VDP EL+S PT++ EA
Sbjct: 34 NGVCSVSEYDGQFNGRAARFKVTSTCGHVMSLDFPPKFNNWERVDPAELYSAPTQRIEAN 93
Query: 92 PKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP---KTVWRARF 148
PK+K+ FLA+EAK+ +FLVLWLDCDKEGENICFEV++AV+ + N V+RA F
Sbjct: 94 PKMKMNEFLASEAKNADFLVLWLDCDKEGENICFEVIDAVKCAMFKNRQDFMSDVYRAHF 153
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
SAIT+KDIKAAM NL +P+ + SVDARQELDLRIGC+FTR+QTKFFQGKYGDLD+++I
Sbjct: 154 SAITEKDIKAAMRNLGRPDQNMSHSVDARQELDLRIGCSFTRFQTKFFQGKYGDLDSNVI 213
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTWSRGHIFDKSTCN 266
SYGPCQTPTLGFCV RHD+I FKPE YW+L + T + +G S W RG IFD
Sbjct: 214 SYGPCQTPTLGFCVTRHDQIVQFKPEQYWVLKTNFTTSDDGQIFSPEWQRGRIFDAEVAR 273
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
VF ++K V+DV K +P ALNTVELMRVASS LGM P M +AE LYTQ
Sbjct: 274 VFVDRIKKCHTGLVLDVSKKEARKERPCALNTVELMRVASSSLGMSPSTTMHVAEALYTQ 333
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT Y NFDL L+ WG V +VL++GI +P+ G D GDHPPIT
Sbjct: 334 GYISYPRTETTAYSANFDLTGTLKILAGDRKWGSVVSQVLADGIKRPKSGVDKGDHPPIT 393
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + L GD R+Y+Y+ +HF+ TL VY K S DE FT++ K ++ PG
Sbjct: 394 PMR-PNHGGLSGDMSRIYEYVSQHFVATLMKQCVYEVTTVKMSCGDEQFTLQGKNVVEPG 452
Query: 447 FTGVMTWSAMKNE-SIPDF--KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIG 503
FT VM W +++ E S+P + G I +Q+ ++ R+TTPP YLTE+ELI+LMEKHGIG
Sbjct: 453 FTAVMPWLSVEEECSVPKSLQQIGAKIELQNAEIQARETTPPGYLTEAELITLMEKHGIG 512
Query: 504 TDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
TDASIPVHIN I QRNYVTV SGRRLVPT LG LV GY K+D ELV PTMR+ Q
Sbjct: 513 TDASIPVHINTITQRNYVTVESGRRLVPTRLGQCLVRGYWKVDPELVLPTMRAELEEQ 570
>gi|393909566|gb|EFO21893.2| DNA topoisomerase III beta-1 [Loa loa]
Length = 859
Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust.
Identities = 303/534 (56%), Positives = 376/534 (70%), Gaps = 5/534 (0%)
Query: 32 NGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREAT 91
N CSV E+ G G LFK+TS CGHIM LDF SK NNW+KVDP++LFS T KREA
Sbjct: 35 NNVCSVSEYCGQFQGQSALFKVTSTCGHIMSLDFPSKMNNWEKVDPVQLFSSSTVKREAN 94
Query: 92 PKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEA-VRHQININSPKTVWR-ARFS 149
PK+++ +LA+EAK C+FLVLWLDCDKEGENICFE + + I + + A FS
Sbjct: 95 PKMRMNEYLASEAKGCDFLVLWLDCDKEGENICFEPLSTLILGSIQMGGGRGGEGRAHFS 154
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
AIT KDIK+AM NL +PNI E+ SVDARQELDLRIGCAFTR+QT++FQGKYG+LD++ IS
Sbjct: 155 AITAKDIKSAMRNLGRPNINESLSVDARQELDLRIGCAFTRFQTQYFQGKYGNLDSTTIS 214
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCNVF 268
+GPCQTPTLGFCV RHD I F+PE YW+L+ + G + ++G IFDK C +F
Sbjct: 215 FGPCQTPTLGFCVTRHDLITQFEPESYWVLETVFETSAGDNLKPIHAKGRIFDKDVCQLF 274
Query: 269 FKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGY 328
F ++K+ VVDV SS K +PQALNTVEL+RVASSGLG+ P M AE LYT+G+
Sbjct: 275 FDRIKKQNQGVVVDVDSSEFRKERPQALNTVELLRVASSGLGLSPAQTMNTAEYLYTRGF 334
Query: 329 VSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPT 388
+SYPRTETT YP NFD LR Q++ W D V+++LS GI+ PR G+D GDHPPI+P
Sbjct: 335 ISYPRTETTAYPSNFDFSEALRHQQNDIRWKDIVKKLLSEGITTPRNGEDKGDHPPISPL 394
Query: 389 KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
+ L GDA ++YDYI +HFI TL Y K +A+E+F ++K +++ G+T
Sbjct: 395 R-GNDGSLTGDALKVYDYIAQHFIATLMKPCTYLVTSVKIDIANEVFIAKSKCIINLGYT 453
Query: 449 GVMTWSAMKNESIP-DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDAS 507
+M W ++ + + G + ++ K+ E TTPPDYLTESELISLMEKHGIGTDAS
Sbjct: 454 EIMVWQKIEEDPQNYNIVKGTKVNLKDGKICEYATTPPDYLTESELISLMEKHGIGTDAS 513
Query: 508 IPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
IPVHI+NICQRNYVTV S RRL PT LGI LVHGY KID ELV PTMRS Q
Sbjct: 514 IPVHISNICQRNYVTVESRRRLKPTKLGIALVHGYWKIDSELVLPTMRSEVESQ 567
>gi|159478116|ref|XP_001697150.1| hypothetical protein CHLREDRAFT_138607 [Chlamydomonas reinhardtii]
gi|158274624|gb|EDP00405.1| predicted protein [Chlamydomonas reinhardtii]
Length = 644
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 282/533 (52%), Positives = 370/533 (69%), Gaps = 9/533 (1%)
Query: 33 GACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP 92
A VHEW G G FKMTSV GH+ +DFT+ +N+WDKVDP +L+ PT K+EA P
Sbjct: 32 AALDVHEWEGRFRGQPARFKMTSVIGHVYSIDFTAAFNSWDKVDPSQLYDAPTVKQEANP 91
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAV--------RHQININSPKTVW 144
K + L E + C+ LVLWLDCD+EGENICFEVM+ V +TV+
Sbjct: 92 KAHVCEHLQREGRGCDVLVLWLDCDREGENICFEVMDNVVPYMSRRGGGGGGSGGQQTVF 151
Query: 145 RARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLD 204
RARFSAIT +I+AAM NLV PN EA +VDARQELDLR+G +FTR+QT+FFQG+YG+LD
Sbjct: 152 RARFSAITAPEIRAAMNNLVSPNEAEALAVDARQELDLRVGVSFTRFQTRFFQGRYGNLD 211
Query: 205 ASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKST 264
AS+ISYGPCQTPTL FCVERH I +F+PEP+W + + GV + + W RG +FD+
Sbjct: 212 ASVISYGPCQTPTLNFCVERHQAITSFQPEPFWAVRPRASKAGVPLELEWERGRVFDQDV 271
Query: 265 CNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY 324
++ V K + VVDV K++P LNTVEL++ AS+ LG+GP HAMQ+AERLY
Sbjct: 272 GGMYAALVRDAKRLRVVDVGEKEDRKSRPHGLNTVELLKYASASLGLGPAHAMQVAERLY 331
Query: 325 TQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPP 384
T GY+SYPRTE++ YP NFD+ + + P +G + +L GI P+ G DVGDHPP
Sbjct: 332 TSGYLSYPRTESSAYPPNFDINGNVAALRNHPVFGGYASALLQQGIKHPQGGTDVGDHPP 391
Query: 385 ITPTKLATRTQL-DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLL 443
ITP + AT T+L GDAWR+YDY+ RHF+G++ D VY + A F EMFT ++
Sbjct: 392 ITPVRSATETELGGGDAWRVYDYVARHFLGSVSPDAVYRKTKAVFEAGGEMFTATGCVVV 451
Query: 444 HPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIG 503
PGFT +M W A +++S+P PG+ + V++ + +T+PPDYLTES+LI LMEK+GIG
Sbjct: 452 KPGFTSIMPWRATQSDSLPPLSPGEHLTCSEVELYQGRTSPPDYLTESDLIGLMEKYGIG 511
Query: 504 TDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
TDASIPVHINNIC+RNYV++ +GR++VPT LGI L+ GYQ ID EL +P +R+
Sbjct: 512 TDASIPVHINNICERNYVSIQAGRKVVPTELGITLIRGYQLIDPELCKPQVRA 564
>gi|326432311|gb|EGD77881.1| DNA topoisomerase [Salpingoeca sp. ATCC 50818]
Length = 855
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 290/555 (52%), Positives = 384/555 (69%), Gaps = 12/555 (2%)
Query: 18 RPSLISLLTPLQRMNGACS----------VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTS 67
+P+L L + NG+CS + E+ G G FK TSV GH+M + F +
Sbjct: 11 KPALAKSLAAILS-NGSCSYGNTRTAGLPLLEYDGVFKGQKAHFKFTSVRGHVMEVQFPA 69
Query: 68 KYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEV 127
KYNNWD+ DP +LF+ E +EA + L +EAK C+FLVLWLDCD EGENICFEV
Sbjct: 70 KYNNWDRTDPGDLFTVDVEMQEADSSKNVVHALRSEAKGCDFLVLWLDCDPEGENICFEV 129
Query: 128 MEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCA 187
++AVR +N + ++RA+FSAIT KDIK AM +L +P+ + SVDAR+ELDLR+G A
Sbjct: 130 IDAVRPAMNHRPGQQIFRAKFSAITAKDIKHAMQHLGEPDKNVSLSVDARRELDLRMGVA 189
Query: 188 FTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNG 247
FTR+Q++FFQGKYGDLD+ ++S+GPCQTPTL CV+RHD I+TF+PE YW LD+ +N
Sbjct: 190 FTRFQSRFFQGKYGDLDSQVLSFGPCQTPTLALCVQRHDLIQTFQPETYWTLDVRALIND 249
Query: 248 VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASS 307
V + W R +FDK+ ++F ++ + V+ VQS K+K +P ALNTVEL+R+ S+
Sbjct: 250 SPVKLQWDRVRVFDKTVASLFLHRIQDVRAAKVLRVQSKEKAKPRPTALNTVELLRICSA 309
Query: 308 GLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLS 367
GLG+GP AM +AERLY QGY+SYPRTETT YP NFD AVL + + SPDWG R +L
Sbjct: 310 GLGIGPQQAMVVAERLYIQGYISYPRTETTAYPANFDTAAVLHELKGSPDWGKEARVLLD 369
Query: 368 NGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAK 427
+ KP+ G D GDHPPITP +LAT +L GD WR+YD + RH+I TL D Y+
Sbjct: 370 GALVKPKGGVDKGDHPPITPARLATDNELSGDMWRVYDLVCRHYIATLSPDCRYSVTNVS 429
Query: 428 FSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES-IPDFKPGDLIPIQSVKMVERKTTPPD 486
+V EMF++ + L+ PGFT V+ W + ++ + +PD + G I++V + E++T PP
Sbjct: 430 LAVGSEMFSLSGQRLISPGFTSVLYWMSPESSTVVPDMQEGQECIIKNVSISEKQTAPPG 489
Query: 487 YLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKID 546
YLTES+LISLMEKHGIGTDASIP HIN IC+RNYVTV GR LVPT+LG+V+VHGYQ+ID
Sbjct: 490 YLTESDLISLMEKHGIGTDASIPKHINTICERNYVTVQGGRTLVPTNLGVVVVHGYQRID 549
Query: 547 RELVEPTMRSAYRVQ 561
+L PTMR+A Q
Sbjct: 550 HDLCLPTMRAAVEKQ 564
>gi|431914329|gb|ELK15587.1| DNA topoisomerase 3-beta-1 [Pteropus alecto]
Length = 779
Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust.
Identities = 303/514 (58%), Positives = 363/514 (70%), Gaps = 35/514 (6%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKREATPKLKLPAFLANEAKDCEFLV 111
MTSVCGH+M LDF KYN WDKVDP ELFS PTEK+EA PKL + FL E K C+++V
Sbjct: 1 MTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGKGCDYIV 60
Query: 112 LWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
LWLDCDKEGENICFEV++AV +N S KTV+RARFS+ITD DI AM L +P+
Sbjct: 61 LWLDCDKEGENICFEVLDAVLPVMNPAHGSEKTVFRARFSSITDTDICNAMARLGEPDHN 120
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+SLIS+GPCQTPTLGFCVERHDKI+
Sbjct: 121 EALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSLISFGPCQTPTLGFCVERHDKIQ 180
Query: 230 TFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTK 288
+FKPE YW+L +N + ++ + W R +FD+ +F + EK V K
Sbjct: 181 SFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKMEKEAQVEATSKKEK 240
Query: 289 SKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAV 348
+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQGY+SYPRTETT YPENFDL +
Sbjct: 241 AKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGL 300
Query: 349 LRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIV 408
LRQQ + P W D V+++LS G G+AW LY+YI
Sbjct: 301 LRQQANHPYWADTVKQLLSEG----------------------------GEAWWLYEYIT 332
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPG 467
RHFI T+ D Y Q F + E FT K ++ PGFT +M W ++ ES+P + G
Sbjct: 333 RHFIATVSYDCKYLQSTISFRIGPEHFTCTGKTVISPGFTEIMPWQSIPLEESLPTCQRG 392
Query: 468 DLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGR 527
D P+ +KM+E++T+PPDYLTE+ELI+LMEKHGI DASIPVHINNICQRNYV V SGR
Sbjct: 393 DTFPVGEMKMLEKQTSPPDYLTEAELITLMEKHGI--DASIPVHINNICQRNYVVVESGR 450
Query: 528 RLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
RL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 451 RLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 484
>gi|312079442|ref|XP_003142175.1| DNA topoisomerase III beta-1 [Loa loa]
Length = 871
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 303/546 (55%), Positives = 376/546 (68%), Gaps = 17/546 (3%)
Query: 32 NGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREAT 91
N CSV E+ G G LFK+TS CGHIM LDF SK NNW+KVDP++LFS T KREA
Sbjct: 35 NNVCSVSEYCGQFQGQSALFKVTSTCGHIMSLDFPSKMNNWEKVDPVQLFSSSTVKREAN 94
Query: 92 PKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEA-VRHQININSPKTVWR-ARFS 149
PK+++ +LA+EAK C+FLVLWLDCDKEGENICFE + + I + + A FS
Sbjct: 95 PKMRMNEYLASEAKGCDFLVLWLDCDKEGENICFEPLSTLILGSIQMGGGRGGEGRAHFS 154
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
AIT KDIK+AM NL +PNI E+ SVDARQELDLRIGCAFTR+QT++FQGKYG+LD++ IS
Sbjct: 155 AITAKDIKSAMRNLGRPNINESLSVDARQELDLRIGCAFTRFQTQYFQGKYGNLDSTTIS 214
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCNVF 268
+GPCQTPTLGFCV RHD I F+PE YW+L+ + G + ++G IFDK C +F
Sbjct: 215 FGPCQTPTLGFCVTRHDLITQFEPESYWVLETVFETSAGDNLKPIHAKGRIFDKDVCQLF 274
Query: 269 FKAV------------EKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHA 316
F + +K+ VVDV SS K +PQALNTVEL+RVASSGLG+ P
Sbjct: 275 FDRIKAPYHDSYCSGFQKQNQGVVVDVDSSEFRKERPQALNTVELLRVASSGLGLSPAQT 334
Query: 317 MQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG 376
M AE LYT+G++SYPRTETT YP NFD LR Q++ W D V+++LS GI+ PR G
Sbjct: 335 MNTAEYLYTRGFISYPRTETTAYPSNFDFSEALRHQQNDIRWKDIVKKLLSEGITTPRNG 394
Query: 377 KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFT 436
+D GDHPPI+P + L GDA ++YDYI +HFI TL Y K +A+E+F
Sbjct: 395 EDKGDHPPISPLR-GNDGSLTGDALKVYDYIAQHFIATLMKPCTYLVTSVKIDIANEVFI 453
Query: 437 MEAKYLLHPGFTGVMTWSAMKNESIP-DFKPGDLIPIQSVKMVERKTTPPDYLTESELIS 495
++K +++ G+T +M W ++ + + G + ++ K+ E TTPPDYLTESELIS
Sbjct: 454 AKSKCIINLGYTEIMVWQKIEEDPQNYNIVKGTKVNLKDGKICEYATTPPDYLTESELIS 513
Query: 496 LMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMR 555
LMEKHGIGTDASIPVHI+NICQRNYVTV S RRL PT LGI LVHGY KID ELV PTMR
Sbjct: 514 LMEKHGIGTDASIPVHISNICQRNYVTVESRRRLKPTKLGIALVHGYWKIDSELVLPTMR 573
Query: 556 SAYRVQ 561
S Q
Sbjct: 574 SEVESQ 579
>gi|432876346|ref|XP_004073003.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-beta-1-like
[Oryzias latipes]
Length = 751
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 299/547 (54%), Positives = 371/547 (67%), Gaps = 33/547 (6%)
Query: 10 PASEIKLARPSLISLLTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKY 69
P+ +AR T + +NGACSVHE+ G G V FKMTSVCGH+M LDF
Sbjct: 11 PSLAQSIARILSKGSCTSRKGLNGACSVHEYTGTFQGQSVRFKMTSVCGHVMSLDF---- 66
Query: 70 NNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVME 129
C + EA+ C+F+VLWLDCDKEGENICFEV++
Sbjct: 67 -----------IGC--------------GCVQVEARGCDFVVLWLDCDKEGENICFEVLD 101
Query: 130 AVRHQININS--PKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCA 187
AV+ +N +TV+RA+FS+ITD DI AM L KPN EA SVDARQELDLRIGCA
Sbjct: 102 AVQPVMNKGGVREQTVFRAKFSSITDTDIWNAMNRLEKPNKNEALSVDARQELDLRIGCA 161
Query: 188 FTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDL-TLNLN 246
FTR+QTK+FQGKYG+LD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L
Sbjct: 162 FTRFQTKYFQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWILQAKVFKGK 221
Query: 247 GVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVAS 306
+++ WSR +FD+ +F + K V V K+K +PQALNTVE++RVAS
Sbjct: 222 DGPLTLDWSRVRVFDREVGQMFVNLAKMSKEAKVEAVSQKEKTKQRPQALNTVEMLRVAS 281
Query: 307 SGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVL 366
S LGMGP H MQIAERLYTQGY+SYPRTETTQYPENFDL LRQQ +SP W + V+ +L
Sbjct: 282 SALGMGPQHTMQIAERLYTQGYISYPRTETTQYPENFDLKGTLRQQANSPMWAEEVKALL 341
Query: 367 SNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVA 426
S G+++PRKG DVG+HPP ++ D WRLY+YI RHFI T+ D Y Q
Sbjct: 342 SAGLNRPRKGNDVGNHPPQDLIRIVLCCSAGSDGWRLYEYITRHFIATVSQDCRYLQSTI 401
Query: 427 KFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPP 485
+FS+ E F+ K + PG+T +M W + E++P +PGD + +++VER+T PP
Sbjct: 402 EFSIGTERFSCGGKTPISPGYTALMPWQGVPLEEALPTCQPGDAFTVDELRLVERQTGPP 461
Query: 486 DYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKI 545
DYLTE+ELI+LMEKHGIGTDASIPVHINN+CQRNYVTV +GRRL PT+LG+VLVHGY KI
Sbjct: 462 DYLTEAELITLMEKHGIGTDASIPVHINNVCQRNYVTVETGRRLKPTNLGVVLVHGYYKI 521
Query: 546 DRELVEP 552
L+EP
Sbjct: 522 VFVLIEP 528
>gi|7510001|pir||T31599 hypothetical protein Y48C3A.q - Caenorhabditis elegans
Length = 646
Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust.
Identities = 307/566 (54%), Positives = 376/566 (66%), Gaps = 37/566 (6%)
Query: 32 NGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREAT 91
NG CSV E+ G G FK+TS CGH+M LDF K+NNW++VDP EL+S PT++ EA
Sbjct: 34 NGVCSVSEYDGQFNGRAARFKVTSTCGHVMSLDFPPKFNNWERVDPAELYSAPTQRIEAN 93
Query: 92 PKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP---KTVWRARF 148
PK+K+ FLA+EAK+ +FLVLWLDCDKEGENICFEV++AV+ + N V+RA F
Sbjct: 94 PKMKMNEFLASEAKNADFLVLWLDCDKEGENICFEVIDAVKCAMFKNRQDFMSDVYRAHF 153
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
SAIT+KDIKAAM NL +P+ + SVDARQELDLRIGC+FTR+QTKFFQGKYGDLD+++I
Sbjct: 154 SAITEKDIKAAMRNLGRPDQNMSHSVDARQELDLRIGCSFTRFQTKFFQGKYGDLDSNVI 213
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTWSRGHIFDKSTCN 266
SYGPCQTPTLGFCV RHD+I FKPE YW+L + T + +G S W RG IFD
Sbjct: 214 SYGPCQTPTLGFCVTRHDQIVQFKPEQYWVLKTNFTTSDDGQIFSPEWQRGRIFDAEVAR 273
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
VF ++K V+DV K +P ALNTVELMRVASS LGM P M +AE LYTQ
Sbjct: 274 VFVDRIKKCHTGLVLDVSKKEARKERPCALNTVELMRVASSSLGMSPSTTMHVAEALYTQ 333
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVRE---------------------- 364
GY+SYPRTETT Y NFDL L+ WG V +
Sbjct: 334 GYISYPRTETTAYSANFDLTGTLKILAGDRKWGSVVSQASGNGKIFDFFSIFFDFFDFFD 393
Query: 365 ------VLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGD 418
VL++GI +P+ G D GDHPPITP + L GD R+Y+Y+ +HF+ TL
Sbjct: 394 FFRCFSVLADGIKRPKSGVDKGDHPPITPMR-PNHGGLSGDMSRIYEYVSQHFVATLMKQ 452
Query: 419 LVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE-SIPDF--KPGDLIPIQSV 475
VY K S DE FT++ K ++ PGFT VM W +++ E S+P + G I +Q+
Sbjct: 453 CVYEVTTVKMSCGDEQFTLQGKNVVEPGFTAVMPWLSVEEECSVPKSLQQIGAKIELQNA 512
Query: 476 KMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLG 535
++ R+TTPP YLTE+ELI+LMEKHGIGTDASIPVHIN I QRNYVTV SGRRLVPT LG
Sbjct: 513 EIQARETTPPGYLTEAELITLMEKHGIGTDASIPVHINTITQRNYVTVESGRRLVPTRLG 572
Query: 536 IVLVHGYQKIDRELVEPTMRSAYRVQ 561
LV GY K+D ELV PTMR+ Q
Sbjct: 573 QCLVRGYWKVDPELVLPTMRAELEEQ 598
>gi|302792781|ref|XP_002978156.1| hypothetical protein SELMODRAFT_233065 [Selaginella moellendorffii]
gi|300154177|gb|EFJ20813.1| hypothetical protein SELMODRAFT_233065 [Selaginella moellendorffii]
Length = 877
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 292/564 (51%), Positives = 385/564 (68%), Gaps = 15/564 (2%)
Query: 8 LVPASEIKLARPSLISLLTPL---QRMNGACS---VHEWVGPLFGDLVLFKMTSVCGHIM 61
+ P + +PS+ +L RM+ S VHE+ G G +K+TSV GH+
Sbjct: 1 MAPVVLMVAEKPSIAGMLASFLSSGRMSTRKSYLDVHEFDGTFRGFQAHYKVTSVIGHVY 60
Query: 62 GLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPA----FLANEAKDCEFLVLWLDCD 117
G+DF KY NW+ DPL+LF PT K EA PK+ EA+ C+ LVLWLDCD
Sbjct: 61 GIDFPPKYQNWELTDPLDLFGAPTLKNEANPKVTSLGNELILTVQEARGCDSLVLWLDCD 120
Query: 118 KEGENICFE-----VMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
+EGENICFE + I S + V+RARFSA+++KD+K AM +LV+PN EA
Sbjct: 121 REGENICFEGSYYWFSLFLSRDIFKRSGQQVFRARFSAVSEKDVKTAMSSLVEPNQNEAL 180
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+VDARQE+DL++G AFTR+QT+FFQGKYG+LD+S+IS+GPCQTPTLGFCVERH +I TF
Sbjct: 181 AVDARQEIDLKVGVAFTRFQTRFFQGKYGNLDSSVISFGPCQTPTLGFCVERHTQIITFV 240
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
P+P+W L L+ G ++ + W RG +F+++T V KAV K + V+DV + K +
Sbjct: 241 PKPFWTLHPRLSKGGHSLQLDWERGRVFEQATALVPQKAVLKSGSLKVLDVSQKEERKAR 300
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P LNTV +++VAS+ LGMGPHHAMQIAERLY QGY+SYPRTE+T YP +FD+ L
Sbjct: 301 PTGLNTVNMLKVASTALGMGPHHAMQIAERLYVQGYISYPRTESTAYPASFDVKESLLPL 360
Query: 353 ESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFI 412
+ P +GD+ R +++ G+ P+ G D GDHPPITP + T ++L GDAWRLYDYI RHF+
Sbjct: 361 GNHPVFGDYARSLIAAGVRAPKSGTDAGDHPPITPMRSGTESELGGDAWRLYDYISRHFL 420
Query: 413 GTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPI 472
G++ D Y + FS E+FT K + PGFT M W A+ +E++P F G+ +P
Sbjct: 421 GSVSPDCKYKRTKVTFSGGGEVFTCSGKVVTSPGFTIAMPWMAVTDENLPAFTIGESLPC 480
Query: 473 QSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPT 532
V++ + +T+PPDYLTES+LISLMEKHGIGTDASIPVHINNICQRNYV V +GRRLVPT
Sbjct: 481 SEVELYQGRTSPPDYLTESDLISLMEKHGIGTDASIPVHINNICQRNYVQVQTGRRLVPT 540
Query: 533 SLGIVLVHGYQKIDRELVEPTMRS 556
+LGI L+ GYQ ID +L P +RS
Sbjct: 541 ALGITLIRGYQTIDADLCLPDIRS 564
>gi|168067110|ref|XP_001785468.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662910|gb|EDQ49709.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 869
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 281/521 (53%), Positives = 367/521 (70%), Gaps = 1/521 (0%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
VHE+ G G V FK+TSV GH++ +DF KY +WD DP ELF PT K E+ PK +
Sbjct: 36 VHEFDGSFRGTSVRFKVTSVIGHVLSIDFPPKYQSWDTTDPFELFEAPTIKNESNPKAHV 95
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L EA+ C++LVLWLDCD+EGENICFEVME+ + + V+RA+FSAI++KD+
Sbjct: 96 CKHLQQEARGCDYLVLWLDCDREGENICFEVMESAVPVLRKLPGQQVFRAKFSAISEKDV 155
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTP 216
+ AM L +PN E+ SVDARQE+DL++G AFTR+QT++FQGKYG+LD+S+ISYGPCQTP
Sbjct: 156 RVAMNTLGEPNKDESLSVDARQEIDLKVGVAFTRFQTRYFQGKYGNLDSSVISYGPCQTP 215
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEK 276
TLGFCVERH +I TF P+P+W++ L+ G + + W R +FD+ +F K V K
Sbjct: 216 TLGFCVERHLRITTFVPQPFWVVRPHLSKGGHQLMLEWDRNRLFDREVAMLFQKLVLDAK 275
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTET 336
V V DV KT+P LNTV++++VASS L MGPHH MQIAERLYTQGY+SYPRTE+
Sbjct: 276 SVRVADVVKKEDRKTRPHGLNTVDMLKVASSALNMGPHHTMQIAERLYTQGYLSYPRTES 335
Query: 337 TQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQL 396
T YP ++D+ L + P WGD+ ++S G P+ G DVGDHPPITPT+ AT ++L
Sbjct: 336 TAYPASYDIREALSIHRNHPIWGDYASSLMSLGPHPPKSGVDVGDHPPITPTRSATESEL 395
Query: 397 -DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSA 455
GD+WRLY+Y+ RHF+G++ D YT+ F+ E F + + GFT VM W A
Sbjct: 396 GGGDSWRLYEYVTRHFLGSVSPDCKYTRTKITFTAGGEKFFASGRTVTSAGFTAVMPWLA 455
Query: 456 MKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNI 515
+ +ES+P G+LIP+ V++ + +T+ PDYLTESELI+LMEKHGIGTDASI VHINNI
Sbjct: 456 VSDESLPLISAGELIPMTDVELYQGRTSAPDYLTESELITLMEKHGIGTDASISVHINNI 515
Query: 516 CQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
C+RNY V SGRRLVPT LGI LV GYQ ID +L P +R+
Sbjct: 516 CERNYAQVQSGRRLVPTPLGITLVRGYQVIDVDLCLPDIRA 556
>gi|359478029|ref|XP_002264970.2| PREDICTED: DNA topoisomerase 3-beta-1-like [Vitis vinifera]
Length = 894
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 275/528 (52%), Positives = 372/528 (70%), Gaps = 1/528 (0%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+R + VHE+ G G +K+TSV GH+ +DF +KY +W DPL+LF P K
Sbjct: 57 RRGGSSTEVHEFNGTFRGSNAQYKVTSVIGHVFSVDFPAKYQDWTVTDPLDLFQAPILKA 116
Query: 89 EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF 148
E+ PK + L+ EA+DC LVLWLDCD+EGENICFEV+E N + + V+RARF
Sbjct: 117 ESNPKAHIRRHLSQEARDCGHLVLWLDCDREGENICFEVVECTGFHGN-EARRRVYRARF 175
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
S++T+KDI AM NLV+PN EAR+VDARQE+DL++G AFTR+QT +FQGKYG+LD+ +I
Sbjct: 176 SSVTEKDILKAMDNLVEPNEDEARAVDARQEIDLKVGVAFTRFQTSYFQGKYGNLDSRVI 235
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVF 268
SYGPCQTPTLGFCV+R+ +I TFKPE +W L + NG + + W R +FD +F
Sbjct: 236 SYGPCQTPTLGFCVQRYLQINTFKPEKFWALHPYITHNGYELQLEWERNKLFDLDVAVMF 295
Query: 269 FKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGY 328
V ++ V V D+ +SK++P LNTV L++VASS LG GP AMQ+AERLYTQG+
Sbjct: 296 QNLVMEDGIVEVTDISEKQESKSRPSGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGF 355
Query: 329 VSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPT 388
+SYPRTE+T YP +FD + L Q ++P WGD+V+++L +G +PR G D GDHPPITP
Sbjct: 356 ISYPRTESTAYPSSFDFKSTLGMQTNNPTWGDYVQKLLDDGFHRPRSGTDAGDHPPITPM 415
Query: 389 KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
+ A L DAW+LY Y+ +HFIGT+ D Y + +FS+ E+F ++++ GFT
Sbjct: 416 RAANEDMLGNDAWKLYQYVCQHFIGTVSPDCKYVRNKVEFSIGGEIFRCIGQHVIVKGFT 475
Query: 449 GVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASI 508
+M W A+ +++P FK G+ I + V++ E +T+PPDYL+ESELISLMEK+GIGTDASI
Sbjct: 476 SIMPWLAVNEKNLPQFKKGEKIEVSKVELYEGETSPPDYLSESELISLMEKNGIGTDASI 535
Query: 509 PVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
PVHINNIC+RN+V V +GR+LVPT+LGI L+ GYQ ID +L P +RS
Sbjct: 536 PVHINNICERNFVQVQAGRKLVPTALGISLIRGYQCIDPDLCLPDIRS 583
>gi|426247933|ref|XP_004017724.1| PREDICTED: DNA topoisomerase 3-beta-1 [Ovis aries]
Length = 709
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 298/544 (54%), Positives = 371/544 (68%), Gaps = 29/544 (5%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVHE+ G G FKMTSVCGH+M LDF KYN WD+VDP ELFS PTEK+E
Sbjct: 32 LNGACSVHEYSGAFEGQPARFKMTSVCGHVMTLDFLGKYNKWDRVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+ +VLWLDCDKEGENICFEV++AV + + +TV+RAR
Sbjct: 92 ANPKLSMVKFLQVEGRGCDCIVLWLDCDKEGENICFEVLDAVLPVMKQTHSGEQTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AAM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDTDICAAMARLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L + + + ++ + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVRSSCLRSLLLDWDRVRVFDREVAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F E+ V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 272 MFLNMTRLEEEAQVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQTAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPE+FDL LRQQ + P W D V+ +L+ G+++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPESFDLKGPLRQQANHPYWADTVKRLLAEGLNRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P K AT +L G+AWRLY+YI RHFI T+ D Y Q F + E FT K ++ PG
Sbjct: 392 PMKSATEAELGGEAWRLYEYITRHFIATVSHDCKYLQSSVSFRIGPERFTCTGKTVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD + + VK++E++T+PPDYLTE+ELI+LMEKHGIG
Sbjct: 452 FTEIMPWQSVPLEESLPTCQKGDTLAVAEVKLLEKQTSPPDYLTEAELITLMEKHGIGGS 511
Query: 506 ASIPVHINN--ICQRNYV----------------------TVTSGRRLVPTSLGIVLVHG 541
P + R + SGRRL PT+LGIVLVHG
Sbjct: 512 RPGPPPRPGPAVAHRAWQGSWGPWLRPPPPDLALGLEIPRDSPSGRRLKPTNLGIVLVHG 571
Query: 542 YQKI 545
Y KI
Sbjct: 572 YYKI 575
>gi|296089603|emb|CBI39422.3| unnamed protein product [Vitis vinifera]
Length = 837
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 275/528 (52%), Positives = 372/528 (70%), Gaps = 1/528 (0%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+R + VHE+ G G +K+TSV GH+ +DF +KY +W DPL+LF P K
Sbjct: 73 RRGGSSTEVHEFNGTFRGSNAQYKVTSVIGHVFSVDFPAKYQDWTVTDPLDLFQAPILKA 132
Query: 89 EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF 148
E+ PK + L+ EA+DC LVLWLDCD+EGENICFEV+E N + + V+RARF
Sbjct: 133 ESNPKAHIRRHLSQEARDCGHLVLWLDCDREGENICFEVVECTGFHGN-EARRRVYRARF 191
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
S++T+KDI AM NLV+PN EAR+VDARQE+DL++G AFTR+QT +FQGKYG+LD+ +I
Sbjct: 192 SSVTEKDILKAMDNLVEPNEDEARAVDARQEIDLKVGVAFTRFQTSYFQGKYGNLDSRVI 251
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVF 268
SYGPCQTPTLGFCV+R+ +I TFKPE +W L + NG + + W R +FD +F
Sbjct: 252 SYGPCQTPTLGFCVQRYLQINTFKPEKFWALHPYITHNGYELQLEWERNKLFDLDVAVMF 311
Query: 269 FKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGY 328
V ++ V V D+ +SK++P LNTV L++VASS LG GP AMQ+AERLYTQG+
Sbjct: 312 QNLVMEDGIVEVTDISEKQESKSRPSGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGF 371
Query: 329 VSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPT 388
+SYPRTE+T YP +FD + L Q ++P WGD+V+++L +G +PR G D GDHPPITP
Sbjct: 372 ISYPRTESTAYPSSFDFKSTLGMQTNNPTWGDYVQKLLDDGFHRPRSGTDAGDHPPITPM 431
Query: 389 KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
+ A L DAW+LY Y+ +HFIGT+ D Y + +FS+ E+F ++++ GFT
Sbjct: 432 RAANEDMLGNDAWKLYQYVCQHFIGTVSPDCKYVRNKVEFSIGGEIFRCIGQHVIVKGFT 491
Query: 449 GVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASI 508
+M W A+ +++P FK G+ I + V++ E +T+PPDYL+ESELISLMEK+GIGTDASI
Sbjct: 492 SIMPWLAVNEKNLPQFKKGEKIEVSKVELYEGETSPPDYLSESELISLMEKNGIGTDASI 551
Query: 509 PVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
PVHINNIC+RN+V V +GR+LVPT+LGI L+ GYQ ID +L P +RS
Sbjct: 552 PVHINNICERNFVQVQAGRKLVPTALGISLIRGYQCIDPDLCLPDIRS 599
>gi|2114264|dbj|BAA20009.1| topoisomerase-III [Homo sapiens]
Length = 753
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 313/570 (54%), Positives = 374/570 (65%), Gaps = 56/570 (9%)
Query: 25 LTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-C 83
L+ + +NGACSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS
Sbjct: 26 LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQA 85
Query: 84 PTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPK 141
PTEK+EA PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N K
Sbjct: 86 PTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKAHGGEK 145
Query: 142 TVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG 201
TV+RARFS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFT
Sbjct: 146 TVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFT------------ 193
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIF 260
+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +F
Sbjct: 194 ---SSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVF 250
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D+ +F + EK V K+K +P ALNTVE++R MGP HAMQ A
Sbjct: 251 DREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLR-------MGPQHAMQTA 303
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG 380
ERLYTQGY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D G
Sbjct: 304 ERLYTQGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAG 363
Query: 381 DHPPITPTKLATRTQLDGDAWRLY--------DYIVRHFIGTLCGDLVYTQKVAKFSVAD 432
DHPPITP K AT +L G A Y + +HFI T+ D Y Q F +
Sbjct: 364 DHPPITPMKSATEAEL-GTALIPYPVCFQGGKGELRQHFIATVSHDCKYLQSTISFRIGP 422
Query: 433 EMFTMEAKYLLHPG-----------FTGVMTW----------SAMKNESIPDFKPGDLIP 471
E+FT K +L PG F G T+ S ES+P + GD P
Sbjct: 423 ELFTCSGKTVLSPGHTTGPAFLLCAFMGRQTFYIVSGDGRPRSVPLEESLPTCQRGDAFP 482
Query: 472 IQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVP 531
+ VKM+E++T PPDYLTE+ELI+LMEKHGIGTDASIPVHINNICQRNYVTV SGRRL P
Sbjct: 483 VGEVKMLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESGRRLKP 542
Query: 532 TSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
T+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 543 TNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 572
>gi|356540116|ref|XP_003538536.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Glycine max]
Length = 863
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 277/539 (51%), Positives = 376/539 (69%), Gaps = 7/539 (1%)
Query: 20 SLISLLTPLQRMN--GACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDP 77
S+ S+L+ Q G+ VHE+ G G F++TSV GH+ +DF KY +W DP
Sbjct: 20 SIASVLSHAQMFTRRGSTEVHEFDGKFLGSPAHFRVTSVIGHVFSVDFPGKYQDWAATDP 79
Query: 78 LELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI 137
L+LF K E+ PK + L+ EA+ C +LVLWLDCD+EGENICFEV+++ IN
Sbjct: 80 LDLFQAQVIKNESNPKAHICRHLSQEARGCRYLVLWLDCDREGENICFEVIKSTGFHIN- 138
Query: 138 NSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQ 197
+RARFS++T+KD+ A+ NLV+PN EA +VDARQE+DL++G AFTR+QT +FQ
Sbjct: 139 ----DTYRARFSSVTEKDVVKALDNLVRPNRDEALAVDARQEIDLKVGVAFTRFQTSYFQ 194
Query: 198 GKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRG 257
GKYG+LD+ +ISYGPCQTPTLGFCV+R+ +I TFKPE +W L + NG + + W RG
Sbjct: 195 GKYGNLDSRVISYGPCQTPTLGFCVQRYLQINTFKPEKFWSLHPYIIQNGYEIQLEWQRG 254
Query: 258 HIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAM 317
+FD + +F K V ++ + V ++ ++K++P LNTV L++VASS LG GP AM
Sbjct: 255 KLFDINVAMMFQKLVSEDGLLEVTEISEKQETKSRPVGLNTVNLLKVASSALGFGPQMAM 314
Query: 318 QIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK 377
Q+AERLYTQG++SYPRTE+T YP +FD VL Q ++P WG++V+ +L+NG KPR G
Sbjct: 315 QLAERLYTQGFISYPRTESTAYPPSFDFRGVLSAQTNNPTWGNYVQGLLTNGYQKPRLGT 374
Query: 378 DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTM 437
DVGDHPPITP + A L DAW+LY YI +HFIGT+ D Y ++ +FS+ E F
Sbjct: 375 DVGDHPPITPMRSAAEDMLGNDAWKLYQYICQHFIGTVSPDCKYIRRKVEFSIGGESFHC 434
Query: 438 EAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLM 497
++++ GFT +M W A+ +++IP F G I + +++ E T+PPD+LTESELISLM
Sbjct: 435 TGQHVVTKGFTAIMPWLAINDKNIPSFIKGQKIEVSKLELYEGSTSPPDFLTESELISLM 494
Query: 498 EKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
EK+GIGTDASIPVHINNIC+RNYV V +GR+LVPT+LGI LV GYQ ID +L P +RS
Sbjct: 495 EKNGIGTDASIPVHINNICERNYVQVQAGRKLVPTTLGITLVRGYQTIDPDLCLPDIRS 553
>gi|302830151|ref|XP_002946642.1| hypothetical protein VOLCADRAFT_79203 [Volvox carteri f.
nagariensis]
gi|300268388|gb|EFJ52569.1| hypothetical protein VOLCADRAFT_79203 [Volvox carteri f.
nagariensis]
Length = 896
Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust.
Identities = 279/534 (52%), Positives = 364/534 (68%), Gaps = 7/534 (1%)
Query: 28 LQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEK 87
L A VHE+ G G FKMTSV GH+ +DFT+ +N+WDKVDP +L+ PT K
Sbjct: 27 LSSRRAALDVHEFEGRFRGQPARFKMTSVIGHVYSIDFTAAFNSWDKVDPAQLYDAPTVK 86
Query: 88 REATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP---KTVW 144
EA PK + L E + C+ LVLWLDCD+EGENICFEV + + P ++V
Sbjct: 87 LEANPKAHVCEHLQREGRGCDVLVLWLDCDREGENICFEVGGWGVRREGKDEPSERQSVL 146
Query: 145 RARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQ---GKYG 201
RARFSAIT +I+AAM NLV PN EA +VDARQELDLR+G +FTR+QT+FFQ G+YG
Sbjct: 147 RARFSAITAPEIRAAMSNLVLPNEAEALAVDARQELDLRVGVSFTRFQTRFFQARDGRYG 206
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFD 261
+LDAS+ISYGPCQTPTL FCVERH I +F+PEP+W + + G + + W +G +FD
Sbjct: 207 NLDASVISYGPCQTPTLNFCVERHQAIVSFQPEPFWSVRPRASKAGTPLELEWDKGRVFD 266
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
+ +F V + K + VVDV K +P LNTVEL++VAS+ LGMGP HAMQIAE
Sbjct: 267 QDVGALFASLVREAKRLRVVDVVEKEDRKQRPHGLNTVELLKVASASLGMGPAHAMQIAE 326
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD 381
RLYT GY+SYPRTE++ YP NFD+ + + P +G + +L G+ P+ G DVGD
Sbjct: 327 RLYTAGYLSYPRTESSAYPPNFDITGTVAALRNHPVFGGYASALLQQGVKHPQGGTDVGD 386
Query: 382 HPPITPTKLATRTQL-DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
HPPITP + AT L GDAWR+YD++ RHF+G++ D VY + A F E F+
Sbjct: 387 HPPITPVRAATEDDLGGGDAWRVYDFVTRHFLGSVSPDAVYRKTKATFEGDGETFSASGS 446
Query: 441 YLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKH 500
++ GFT +M W A ++E +P PG+ +P+ +++ + +T+PPDYLTES+LI LMEKH
Sbjct: 447 VVVRQGFTAIMPWRATQSEPLPPLTPGEYLPLSDLELYQGRTSPPDYLTESDLIGLMEKH 506
Query: 501 GIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
GIGTDASIPVHINNIC+RNYVT+ SGRR+VPT LGI L+ GYQ ID EL +P +
Sbjct: 507 GIGTDASIPVHINNICERNYVTIQSGRRVVPTELGITLIRGYQLIDPELCKPQV 560
>gi|449459882|ref|XP_004147675.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Cucumis sativus]
Length = 867
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 279/524 (53%), Positives = 362/524 (69%), Gaps = 1/524 (0%)
Query: 33 GACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP 92
G+ VHE+ G G +K+TSV GH+ +DF + + +W DPL+LF K E+ P
Sbjct: 33 GSTEVHEFDGRFLGHHAYYKVTSVIGHVFSIDFQAGFQDWKSTDPLDLFQASVIKTESNP 92
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT 152
K + L+ EA+ C+ LVLWLDCD+EGENICFEV+E N + K V+RARFS++T
Sbjct: 93 KAHICQHLSREARGCDCLVLWLDCDREGENICFEVIECTGFGGN-GTRKKVYRARFSSVT 151
Query: 153 DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGP 212
+KDI A+ NLV+PN EA +VDARQE+DL++G AFTR+QT FFQGKYG+LD+ LISYGP
Sbjct: 152 EKDILKALDNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTFFQGKYGNLDSRLISYGP 211
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAV 272
CQTPTLGFCV+RH +I TFKPE +W + + G +++ W RG +FD +F K V
Sbjct: 212 CQTPTLGFCVQRHLQITTFKPEKFWSVCPYILQTGYELNLDWERGKLFDCDVTAMFQKRV 271
Query: 273 EKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYP 332
++ V ++ ++K +P LNTV L++VASS LG GP AMQ+AERLYTQG++SYP
Sbjct: 272 IEDGIAEVTEISEKQENKVRPSGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFISYP 331
Query: 333 RTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLAT 392
RTE+T YP +FD L +P+WGD+VR +LS+G SKPR G DVGDHPPITP LAT
Sbjct: 332 RTESTAYPSSFDFKGTLHTLVKNPEWGDYVRMLLSDGYSKPRSGTDVGDHPPITPMCLAT 391
Query: 393 RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
L DAWRLY Y+ +HFIG+L D Y + +FS+A E+F + GFT +M
Sbjct: 392 EDMLGRDAWRLYQYVCQHFIGSLSSDCKYIRTKIQFSIAGEIFNCTGSRVTVKGFTSIMP 451
Query: 453 WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHI 512
W A+ + +P F G+ I + V + + TTPPDYL+ESELISLMEKHGIGTDASIPVHI
Sbjct: 452 WLAVNEKKLPQFLKGEKIEVARVDLYQGNTTPPDYLSESELISLMEKHGIGTDASIPVHI 511
Query: 513 NNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
NNI +RNYV V +GRRLVPT+LGI L+ GYQ ID +L P +RS
Sbjct: 512 NNIGERNYVQVQAGRRLVPTNLGITLIRGYQCIDPDLCLPDIRS 555
>gi|449498877|ref|XP_004160658.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Cucumis sativus]
Length = 864
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 279/524 (53%), Positives = 362/524 (69%), Gaps = 1/524 (0%)
Query: 33 GACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP 92
G+ VHE+ G G +K+TSV GH+ +DF + + +W DPL+LF K E+ P
Sbjct: 30 GSTEVHEFDGRFLGHHAYYKVTSVIGHVFSIDFQAGFQDWKSTDPLDLFQASVIKTESNP 89
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT 152
K + L+ EA+ C+ LVLWLDCD+EGENICFEV+E N + K V+RARFS++T
Sbjct: 90 KAHICQHLSREARGCDCLVLWLDCDREGENICFEVIECSGFGGN-GTRKKVYRARFSSVT 148
Query: 153 DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGP 212
+KDI A+ NLV+PN EA +VDARQE+DL++G AFTR+QT FFQGKYG+LD+ LISYGP
Sbjct: 149 EKDILKALDNLVEPNRNEALAVDARQEIDLKVGVAFTRFQTTFFQGKYGNLDSRLISYGP 208
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAV 272
CQTPTLGFCV+RH +I TFKPE +W + + G +++ W RG +FD +F K V
Sbjct: 209 CQTPTLGFCVQRHLQITTFKPEKFWSVCPYILQTGYELNLDWERGKLFDCDVTAMFQKRV 268
Query: 273 EKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYP 332
++ V ++ ++K +P LNTV L++VASS LG GP AMQ+AERLYTQG++SYP
Sbjct: 269 IEDGIAEVTEISEKQENKVRPSGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFISYP 328
Query: 333 RTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLAT 392
RTE+T YP +FD L +P+WGD+VR +LS+G SKPR G DVGDHPPITP LAT
Sbjct: 329 RTESTAYPSSFDFKGTLHTLVKNPEWGDYVRMLLSDGYSKPRSGTDVGDHPPITPMCLAT 388
Query: 393 RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
L DAWRLY Y+ +HFIG+L D Y + +FS+A E+F + GFT +M
Sbjct: 389 EDMLGRDAWRLYQYVCQHFIGSLSSDCKYIRTKIQFSIAGEIFNCTGSRVTVKGFTSIMP 448
Query: 453 WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHI 512
W A+ + +P F G+ I + V + + TTPPDYL+ESELISLMEKHGIGTDASIPVHI
Sbjct: 449 WLAVNEKKLPQFLKGEKIEVARVDLYQGNTTPPDYLSESELISLMEKHGIGTDASIPVHI 508
Query: 513 NNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
NNI +RNYV V +GRRLVPT+LGI L+ GYQ ID +L P +RS
Sbjct: 509 NNIGERNYVQVQAGRRLVPTNLGITLIRGYQCIDPDLCLPDIRS 552
>gi|313229708|emb|CBY18523.1| unnamed protein product [Oikopleura dioica]
Length = 856
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 283/540 (52%), Positives = 362/540 (67%), Gaps = 6/540 (1%)
Query: 23 SLLTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS 82
S+ T + G C VHE+ G G FK+TSVCGH+ +DF +++NNWDK DP ELFS
Sbjct: 25 SMATRPAKTGGPCKVHEYKGQYKGKPATFKVTSVCGHVFSIDFEAQFNNWDKTDPAELFS 84
Query: 83 CPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKT 142
T K EA PK+ + L E+ C+ LVLWLDCD+EGENICFEVM + H N
Sbjct: 85 AGTVKDEANPKMHMRKHLKTESASCDELVLWLDCDREGENICFEVMSCIPHIRGNN---- 140
Query: 143 VWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD 202
V RA FSAITDKDIK AM NL PN E+ +VDARQELDLRIGCAFTR+QTKFFQG+YGD
Sbjct: 141 VRRAHFSAITDKDIKKAMANLGSPNKLESLAVDARQELDLRIGCAFTRFQTKFFQGQYGD 200
Query: 203 LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNL-NGVAVSVTWSRGHIFD 261
LD++ ISYGPCQTPTLGFCVERHD+I FKPE +W + L + N + W RG IFD
Sbjct: 201 LDSNCISYGPCQTPTLGFCVERHDQITKFKPEKFWRMSLAVQTENSGNLYADWQRGRIFD 260
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
+ N+ ++ K V V K+K +P ALNTVEL+RV S+ LG+GP AM AE
Sbjct: 261 QGVANMLHGKIKNIKSAVVQSVSKKAKAKQRPVALNTVELLRVCSAKLGIGPAQAMVSAE 320
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD 381
RLYTQG++SYPRTETT Y ENFD V+ + S +E++ + PRKG+D GD
Sbjct: 321 RLYTQGFISYPRTETTSYSENFDFRPVISMLQHSTPHSIAAQELMKSS-PNPRKGEDKGD 379
Query: 382 HPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKY 441
HPPITP + + T++ G+A+R+Y+Y+ HF+ +L D Y Q V +E+F + A
Sbjct: 380 HPPITPQRNCSETEVGGEAYRVYNYVASHFLASLMKDYKYEQTEITIKVGNEVFHLTANR 439
Query: 442 LLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHG 501
G+ +T ++ +PD + G + + S ++ E+ T PPDYLTES+LI+LMEKHG
Sbjct: 440 EKEKGYALALTNVGVEESVLPDVQKGSSLNVASCQLEEKYTGPPDYLTESDLITLMEKHG 499
Query: 502 IGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
IGTDASIPVHINNI QRNYV + SGR+L PT LG+VLVHGY+KID +LV+P MR++ Q
Sbjct: 500 IGTDASIPVHINNIVQRNYVQLVSGRKLEPTELGVVLVHGYKKIDPDLVKPQMRASVEKQ 559
>gi|313239950|emb|CBY32313.1| unnamed protein product [Oikopleura dioica]
Length = 856
Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust.
Identities = 284/540 (52%), Positives = 361/540 (66%), Gaps = 6/540 (1%)
Query: 23 SLLTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS 82
S+ T + G C VHE+ G G FK+TSVCGH+ +DF +++NNWDK DP ELFS
Sbjct: 25 SMATRPAKTGGPCKVHEYKGQYKGKPATFKVTSVCGHVFSIDFEAQFNNWDKTDPAELFS 84
Query: 83 CPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKT 142
T K EA PK+ + L E+ C+ LVLWLDCD+EGENICFEVM + H N
Sbjct: 85 AGTVKDEANPKMHMRKHLKTESASCDELVLWLDCDREGENICFEVMSCIPHIRGNN---- 140
Query: 143 VWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD 202
V RA FSAITDKDIK AM NL PN E+ +VDARQELDLRIGCAFTR+QTKFFQG+YGD
Sbjct: 141 VRRAHFSAITDKDIKKAMANLGSPNKLESLAVDARQELDLRIGCAFTRFQTKFFQGQYGD 200
Query: 203 LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNL-NGVAVSVTWSRGHIFD 261
LD++ ISYGPCQTPTLGFCVERHD+I FKPE +W + L + N + W RG IFD
Sbjct: 201 LDSNCISYGPCQTPTLGFCVERHDQITKFKPEKFWRMSLAVQTENSGNLYADWQRGRIFD 260
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
+ N+ ++ K V V K+K +P ALNTVEL+RV S+ LG+GP AM AE
Sbjct: 261 QGVANMLHGKIKNIKSAVVQSVSKKAKAKQRPVALNTVELLRVCSAKLGIGPAQAMVSAE 320
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD 381
RLYTQGY+SYPRTETT Y ENFD V+ + S +E++ + PRKG+D GD
Sbjct: 321 RLYTQGYISYPRTETTSYSENFDFRPVISMLQHSTPHSIAAQELMKSS-PNPRKGEDKGD 379
Query: 382 HPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKY 441
HPPITP + + T++ G+A+R+Y Y+ HF+ +L D Y Q V +E+F + A
Sbjct: 380 HPPITPQRNCSETEVGGEAYRVYYYVASHFLASLMKDYKYEQTEITVKVGNEVFHLTANR 439
Query: 442 LLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHG 501
G+ +T ++ +PD + G + + S ++ E+ T PPDYLTES+LI+LMEKHG
Sbjct: 440 EKEKGYALALTNVGVEESVLPDVQKGSSLNVTSCQLEEKYTGPPDYLTESDLITLMEKHG 499
Query: 502 IGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
IGTDASIPVHINNI QRNYV + SGR+L PT LG+VLVHGY+KID +LV+P MR++ Q
Sbjct: 500 IGTDASIPVHINNIVQRNYVQLVSGRKLEPTELGVVLVHGYKKIDPDLVKPQMRASVEKQ 559
>gi|313224215|emb|CBY32300.1| unnamed protein product [Oikopleura dioica]
Length = 856
Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust.
Identities = 283/540 (52%), Positives = 362/540 (67%), Gaps = 6/540 (1%)
Query: 23 SLLTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS 82
S+ T + G C VHE+ G G FK+TSVCGH+ +DF +++NNWDK DP ELFS
Sbjct: 25 SMATRPAKTGGPCKVHEYKGQYKGKPATFKVTSVCGHVFSIDFEAQFNNWDKTDPAELFS 84
Query: 83 CPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKT 142
T K EA PK+ + L E+ C+ LVLWLDCD+EGENICFEVM + H N
Sbjct: 85 AGTVKDEANPKMHMRKHLKTESASCDELVLWLDCDREGENICFEVMSCIPHIRGNN---- 140
Query: 143 VWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD 202
V RA FSAITDKDIK AM NL PN E+ +VDARQELDLRIGCAFTR+QTKFFQG+YGD
Sbjct: 141 VRRAHFSAITDKDIKKAMNNLGSPNKLESLAVDARQELDLRIGCAFTRFQTKFFQGQYGD 200
Query: 203 LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNL-NGVAVSVTWSRGHIFD 261
LD++ ISYGPCQTPTLGFCVERHD+I FKPE +W + L + N + W RG IFD
Sbjct: 201 LDSNCISYGPCQTPTLGFCVERHDQITKFKPEKFWRMSLAVQTENSGNLYADWQRGRIFD 260
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
+ N+ ++ K V V K+K +P ALNTVEL+RV S+ LG+GP AM AE
Sbjct: 261 QGVANMLHGKIKNIKSAVVQSVSKKAKAKQRPVALNTVELLRVCSAKLGIGPAQAMVSAE 320
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD 381
RLYTQG++SYPRTETT Y ENFD V+ + S +E++ + PRKG+D GD
Sbjct: 321 RLYTQGFISYPRTETTSYSENFDFRPVISMLQHSTPHSIAAQELMKSS-PNPRKGEDKGD 379
Query: 382 HPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKY 441
HPPITP + + T++ G+A+R+Y+Y+ HF+ +L D Y Q V +E+F + A
Sbjct: 380 HPPITPQRNCSETEVGGEAYRVYNYVASHFLASLMKDYKYEQTEITVKVGNEVFHLTANR 439
Query: 442 LLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHG 501
G+ +T ++ +PD + G + + S ++ E+ T PPDYLTES+LI+LMEKHG
Sbjct: 440 EKEKGYALALTNVGVEESVLPDVQKGSSLNVTSCQLEEKYTGPPDYLTESDLITLMEKHG 499
Query: 502 IGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
IGTDASIPVHINNI QRNYV + SGR+L PT LG+VLVHGY+KID +LV+P MR++ Q
Sbjct: 500 IGTDASIPVHINNIVQRNYVQLVSGRKLEPTELGVVLVHGYKKIDPDLVKPQMRASVEKQ 559
>gi|255550676|ref|XP_002516387.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
gi|223544485|gb|EEF46004.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
Length = 865
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 277/524 (52%), Positives = 365/524 (69%), Gaps = 1/524 (0%)
Query: 33 GACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP 92
G VHE+ G G +K+TSV GHI +DF KY +W DP++LF P K E+ P
Sbjct: 33 GGTEVHEFDGMFLGFQAHYKVTSVIGHIFSVDFPQKYQDWTANDPMDLFQAPIVKAESNP 92
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT 152
K+ + L+ EA+ C LVLWLDCD+EGENICFEV+E +N +S + V+RARFS++
Sbjct: 93 KVHIRRHLSQEARGCGHLVLWLDCDREGENICFEVIECTGFHLN-DSRRRVYRARFSSVA 151
Query: 153 DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGP 212
+KDI AM NLV+PN EA +VDARQE+DL++G AFTR+QT FFQGKYG+LD+ +ISYGP
Sbjct: 152 EKDILKAMDNLVQPNRDEALAVDARQEIDLKVGVAFTRFQTSFFQGKYGNLDSRVISYGP 211
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAV 272
CQTPTLGFCV+R+ +I TFKPE +W L L ++G + + W R +FD +F K V
Sbjct: 212 CQTPTLGFCVQRYLQIATFKPEKFWSLRPHLIIDGYQLQLEWERHRLFDLDVALMFQKQV 271
Query: 273 EKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYP 332
++ + V+D+ ++K +P LNTV L++VASS LG GP AMQ+AERLYTQG++SYP
Sbjct: 272 LQDGILEVIDISQKQETKGRPSGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFISYP 331
Query: 333 RTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLAT 392
RTE+T YP +FD ++L ++ WGD VR +L G KPR G D GDHPPITP +LAT
Sbjct: 332 RTESTAYPSSFDFKSILSTLLNNSIWGDSVRRLLVEGYHKPRLGTDAGDHPPITPIRLAT 391
Query: 393 RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
L DAWRLY Y+ +HFIG++ D Y + +FSV E F ++++ GFT +M
Sbjct: 392 EDMLGKDAWRLYQYVCQHFIGSVSPDCKYVRTKVEFSVGGEFFHCIGQHVIVEGFTSIMP 451
Query: 453 WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHI 512
W A+ +++P G+ I + ++++E KTTPPDYLTESELISLMEK+GIGTDASIPVHI
Sbjct: 452 WLAVTEKNLPQLVKGEKIEVLRMELLEGKTTPPDYLTESELISLMEKNGIGTDASIPVHI 511
Query: 513 NNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
NNIC+RNYV V +GRRL PT LGI L+ GYQ ID +L P +RS
Sbjct: 512 NNICERNYVQVQAGRRLAPTILGITLIRGYQCIDPDLCLPDIRS 555
>gi|297826655|ref|XP_002881210.1| DNA topoisomerase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297327049|gb|EFH57469.1| DNA topoisomerase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 865
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 279/553 (50%), Positives = 372/553 (67%), Gaps = 2/553 (0%)
Query: 4 RVKKLVPASEIKLARPSLISLLTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGL 63
RV + I L+ S++S + G+ VHE+ G G +++TSV GH+ +
Sbjct: 6 RVLMVAEKPSIALSIASVLSH-GQMSTRRGSTEVHEFDGMFRGFKAHYRVTSVIGHVFSV 64
Query: 64 DFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENI 123
DF KY NW +DP +LF P K+E+ PK + L+NEA+ C ++VLWLDCD+EGENI
Sbjct: 65 DFPEKYQNWATIDPQDLFDAPILKKESNPKAHICRHLSNEARGCSYMVLWLDCDREGENI 124
Query: 124 CFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLR 183
CFEV+E+ + +S + V+RARFS++T+KDI AM NLV+PN EA +VDARQE+DL+
Sbjct: 125 CFEVIESTGFDMK-DSKRKVYRARFSSVTEKDISKAMDNLVEPNRDEALAVDARQEIDLK 183
Query: 184 IGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL 243
+G AF+R+QT +FQGKY +LD +ISYGPCQTPTLGFCV+R+ I TFKPE +W L +
Sbjct: 184 VGVAFSRFQTSYFQGKYQNLDCRVISYGPCQTPTLGFCVQRYMHINTFKPEKFWALRPYI 243
Query: 244 NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMR 303
+G + + W R +FD VF K V + + V+DV + K +P LNTV L++
Sbjct: 244 IKDGYELQLEWERRRLFDLEAATVFQKLVVEGRTAKVMDVSEKQEVKGRPAGLNTVSLLK 303
Query: 304 VASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVR 363
VASS LG GP AM +AERLYTQG++SYPRTE+T YP +FD LR Q S+P WG +V+
Sbjct: 304 VASSALGFGPQTAMHLAERLYTQGFISYPRTESTAYPSSFDFTDTLRAQVSNPVWGGYVQ 363
Query: 364 EVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQ 423
+LS+G KP+ G D GDHPPITP + AT + GDAWRLY Y+ +HFIGT+ + Y +
Sbjct: 364 RLLSDGFHKPKSGTDAGDHPPITPMRAATEVMVGGDAWRLYQYVCQHFIGTVSPNCKYIR 423
Query: 424 KVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTT 483
+ S+ E F + + GFT +M WSA+ + +P F G+ I + V++ E T
Sbjct: 424 TKVELSIGGETFHCTGQRVTEKGFTAIMPWSAVDEKKLPSFLKGERIEVIRVELYEGNTA 483
Query: 484 PPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQ 543
PPDYLTESELISLMEKHGIGTDASIPVHINNI +RNYV V +GR+LVPT+LGI L+ GYQ
Sbjct: 484 PPDYLTESELISLMEKHGIGTDASIPVHINNIGERNYVQVQAGRKLVPTALGITLIRGYQ 543
Query: 544 KIDRELVEPTMRS 556
ID +L P +RS
Sbjct: 544 CIDPDLCLPDIRS 556
>gi|42569543|ref|NP_180760.2| DNA topoisomerase III [Arabidopsis thaliana]
gi|330253525|gb|AEC08619.1| DNA topoisomerase III [Arabidopsis thaliana]
Length = 865
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 277/554 (50%), Positives = 371/554 (66%), Gaps = 2/554 (0%)
Query: 3 LRVKKLVPASEIKLARPSLISLLTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMG 62
LRV + I L+ S++S + G+ VHE+ G G +++TSV GH+
Sbjct: 5 LRVLMVAEKPSIALSIASVLSH-GQMSTRRGSTEVHEFDGMFRGFKAHYRVTSVIGHVFS 63
Query: 63 LDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGEN 122
+DF KY NW +DP +LF P K+E+ PK + L+NEA+ C ++VLWLDCD+EGEN
Sbjct: 64 VDFPEKYQNWATIDPQDLFDAPIIKKESNPKAHICRHLSNEARGCSYMVLWLDCDREGEN 123
Query: 123 ICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDL 182
ICFEV+E+ + +S + V+RARFS++T+KDI AM NLV+PN EA +VDARQE+DL
Sbjct: 124 ICFEVIESTGFDMK-DSKRKVYRARFSSVTEKDISKAMDNLVEPNRDEALAVDARQEIDL 182
Query: 183 RIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLT 242
++G AF+R+QT +FQGKY +LD +ISYGPCQTPTLGFCV+R+ I TFKPE +W L
Sbjct: 183 KVGVAFSRFQTSYFQGKYQNLDCRVISYGPCQTPTLGFCVQRYMHINTFKPEKFWALRPY 242
Query: 243 LNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELM 302
+ +G + + W R +FD VF K V + + V+DV + K +P LNTV L+
Sbjct: 243 IRKDGYELQLEWERRRLFDLEAATVFQKLVVEGRTAKVMDVSEKQEVKGRPAGLNTVNLL 302
Query: 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHV 362
+VASS LG GP AM +AERLYTQG++SYPRTE+T YP +FD LR Q S+P WG +V
Sbjct: 303 KVASSALGFGPQTAMHLAERLYTQGFISYPRTESTAYPSSFDFTDTLRAQVSNPVWGGYV 362
Query: 363 REVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYT 422
+ +LS+G P+ G D GDHPPITP + AT + GDAWRLY Y+ +HF+GT+ + Y
Sbjct: 363 QRLLSDGFHMPKSGTDAGDHPPITPMRAATEVMVGGDAWRLYQYVCQHFLGTVSPNCKYI 422
Query: 423 QKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKT 482
+ + S+ E F + + GFT +M WSA+ + +P F G+ I + V++ E T
Sbjct: 423 RTKVELSIGGETFHCTGQRVTEKGFTAIMPWSAVDEKKLPSFLKGERIEVLRVELYEGNT 482
Query: 483 TPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGY 542
PPDYLTESELISLMEKHGIGTDASI VHINNI +RNYV V SGR++VPT+LGI L+ GY
Sbjct: 483 APPDYLTESELISLMEKHGIGTDASIAVHINNIGERNYVQVQSGRKMVPTALGITLIRGY 542
Query: 543 QKIDRELVEPTMRS 556
Q ID +L P +RS
Sbjct: 543 QCIDPDLCLPDIRS 556
>gi|242045216|ref|XP_002460479.1| hypothetical protein SORBIDRAFT_02g029000 [Sorghum bicolor]
gi|241923856|gb|EER97000.1| hypothetical protein SORBIDRAFT_02g029000 [Sorghum bicolor]
Length = 866
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 277/524 (52%), Positives = 353/524 (67%), Gaps = 3/524 (0%)
Query: 33 GACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP 92
G+ VHE+ G G FK+TSV GH++ +DF Y NW+ DPL+LF P + E P
Sbjct: 32 GSTDVHEFDGTFQGSYANFKVTSVIGHVLSVDFPPAYQNWEATDPLDLFEAPVLRSECNP 91
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT 152
K + LA EA+ C +L+LWLDCD+EGENIC+EV+E N + ++RARFS++T
Sbjct: 92 KAHIRRHLAQEARGCTYLILWLDCDREGENICYEVIECTGIPDN---GRRIFRARFSSVT 148
Query: 153 DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGP 212
+KDI AM NLV PN EA SVDARQE+DL++G AFTR+QT++FQGKYG+LD+ +ISYGP
Sbjct: 149 EKDILTAMDNLVLPNKDEALSVDARQEIDLKVGVAFTRFQTRYFQGKYGNLDSRVISYGP 208
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAV 272
CQTPTLGFCV+R+ +I TFKPE +W L + + + + W R +FD +F K V
Sbjct: 209 CQTPTLGFCVQRYQQITTFKPEKFWSLKTYIIKDSDEIQLEWDRKKLFDFDVTVMFQKMV 268
Query: 273 EKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYP 332
+ + V DV + KT+P LNTV +++VASS LG+GP AM +AERLYTQG++SYP
Sbjct: 269 ISDGSLKVADVSVKEECKTRPSGLNTVNMLKVASSALGIGPQTAMHLAERLYTQGFISYP 328
Query: 333 RTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLAT 392
RTE+T YP +FD L ++P W + VR +L G KPR+G D GDHPPITP + AT
Sbjct: 329 RTESTAYPSSFDFRGALAALLNNPLWSNDVRTLLDAGFVKPRQGHDAGDHPPITPMRSAT 388
Query: 393 RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
L DAWRLY YI +HFIGT+ D YT+ +F+ E F + GFT +M
Sbjct: 389 EAALGTDAWRLYQYICQHFIGTVSPDCRYTRTAIEFTSGGETFHCVGYRVTSKGFTSIMP 448
Query: 453 WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHI 512
W A+ S+P FK GD + I V + E TTPPDYLTESELISLMEK+GIGTDASIPVHI
Sbjct: 449 WLAISENSLPAFKKGDSVSIHKVDIYEGSTTPPDYLTESELISLMEKNGIGTDASIPVHI 508
Query: 513 NNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
NNIC+RNYV V SGRRLVPT LG L+ GYQ ID +L P +RS
Sbjct: 509 NNICERNYVQVNSGRRLVPTPLGTTLIRGYQCIDADLCLPDIRS 552
>gi|62319698|dbj|BAD95240.1| putative DNA topoisomerase III beta [Arabidopsis thaliana]
Length = 865
Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust.
Identities = 276/554 (49%), Positives = 370/554 (66%), Gaps = 2/554 (0%)
Query: 3 LRVKKLVPASEIKLARPSLISLLTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMG 62
LRV + I L+ S++S + G+ VHE+ G G +++TSV GH+
Sbjct: 5 LRVLMVAEKPSIALSIASVLSH-GQMSTRGGSTEVHEFDGMFRGFKAHYRVTSVIGHVFS 63
Query: 63 LDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGEN 122
+DF KY NW +DP +LF P K+E+ PK + L+NEA+ C ++VLWLDCD+EGEN
Sbjct: 64 VDFPEKYQNWATIDPQDLFGAPIIKKESNPKAHICRHLSNEARGCSYMVLWLDCDREGEN 123
Query: 123 ICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDL 182
ICFEV+E+ + +S + V+RARFS++T+KDI AM NLV+PN EA +VDARQE+DL
Sbjct: 124 ICFEVIESTGFDMK-DSKRKVYRARFSSVTEKDISKAMDNLVEPNRDEALAVDARQEIDL 182
Query: 183 RIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLT 242
++G AF+R+QT +FQGKY +LD +ISYGPCQTPTLGFCV+R+ I TFKPE +W L
Sbjct: 183 KVGVAFSRFQTSYFQGKYQNLDCRVISYGPCQTPTLGFCVQRYMHINTFKPEKFWALRPC 242
Query: 243 LNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELM 302
+ +G + + W R +FD VF K V + + V+DV + K +P LNTV L+
Sbjct: 243 IRKDGYELQLEWERRRLFDLEAATVFQKLVVEGRTAKVMDVSEKQEVKGRPAGLNTVNLL 302
Query: 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHV 362
+VASS LG GP AM +AERLYTQG++SYPRTE+T YP +FD LR Q S+P WG +V
Sbjct: 303 KVASSALGFGPQTAMHLAERLYTQGFISYPRTESTAYPSSFDFTDTLRAQVSNPVWGGYV 362
Query: 363 REVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYT 422
+ +LS+G P+ G D GDHPPITP + AT + G AWRLY Y+ +HF+GT+ + Y
Sbjct: 363 QRLLSDGFHMPKSGTDAGDHPPITPMRAATEVMVGGVAWRLYQYVCQHFLGTVSPNCKYI 422
Query: 423 QKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKT 482
+ + S+ E F + + GFT +M WSA+ + +P F G+ I + V++ E T
Sbjct: 423 RTKVELSIGGETFHCTGQRVTEKGFTAIMPWSAVDEKKLPSFLKGERIEVLRVELYEGNT 482
Query: 483 TPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGY 542
PPDYLTESELISLMEKHGIGTDASI VHINNI +RNYV V SGR++VPT+LGI L+ GY
Sbjct: 483 APPDYLTESELISLMEKHGIGTDASIAVHINNIGERNYVQVQSGRKMVPTALGITLIRGY 542
Query: 543 QKIDRELVEPTMRS 556
Q ID +L P +RS
Sbjct: 543 QCIDPDLCLPDIRS 556
>gi|268532954|ref|XP_002631605.1| Hypothetical protein CBG20786 [Caenorhabditis briggsae]
Length = 591
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 291/538 (54%), Positives = 355/538 (65%), Gaps = 9/538 (1%)
Query: 32 NGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREAT 91
NG CSV E+ G G FK+TS CGH+M LDF SKYNNW++VDP EL+S P K EA
Sbjct: 29 NGVCSVSEYDGQFNGRNAKFKVTSTCGHVMSLDFPSKYNNWERVDPAELYSAPAVKIEAN 88
Query: 92 PKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAI 151
K+K+ FLA+EAK + LVLWLDCDKEGENICFEV + + V+RA FSAI
Sbjct: 89 AKMKMNEFLASEAKTADILVLWLDCDKEGENICFEVGLNPMFKNRPDFMSDVYRAHFSAI 148
Query: 152 TDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKF-----FQGKYGDLDAS 206
T+KD+KAAM NL +P+ A SVDARQELDLRIGC+FTR+QTKF + ++
Sbjct: 149 TEKDLKAAMKNLGRPDQNMALSVDARQELDLRIGCSFTRFQTKFNCKSSIKWASKKTKST 208
Query: 207 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCN 266
+ISYGPCQTPTLGFCV RHD+I FKPE YW+L T + + S W RG IFD
Sbjct: 209 VISYGPCQTPTLGFCVTRHDQIVQFKPESYWVLKTTFSCDSQTFSPEWQRGRIFDAEIAK 268
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F ++K VVDV K +P ALNTVELMRVASS LG+ P M +AE LYTQ
Sbjct: 269 LFVDRIKKSHTGVVVDVSKKEARKERPCALNTVELMRVASSSLGLSPSTTMHVAESLYTQ 328
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YP NFDL L+ WG V +VL+ GI +P+ G D GDHPPIT
Sbjct: 329 GYISYPRTETTAYPANFDLNGTLKILSGDRKWGSVVSQVLAEGIKRPKSGVDKGDHPPIT 388
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + A L GD R+Y+Y+ +HF+ TL +Y K +E FT++ K ++ PG
Sbjct: 389 PMR-ANTGGLSGDMARIYEYVSQHFVATLMKPCIYEVTTVKMMCGEEQFTIQGKNVVDPG 447
Query: 447 FTGVMTWSAMKNE-SIPDF--KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIG 503
FT +M W ++ E S+P + G I +Q ++ R+TTPP YLTE+ELI+LMEKHGIG
Sbjct: 448 FTAIMPWLGVEEECSVPKSLQQVGAKIELQDAQIQARETTPPGYLTEAELITLMEKHGIG 507
Query: 504 TDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
TDASIPVHIN I QRNYVTV SGRRLVPT LG LV GY K+D ELV PTMR+ Q
Sbjct: 508 TDASIPVHINTITQRNYVTVESGRRLVPTRLGQCLVRGYWKVDPELVLPTMRAELEEQ 565
>gi|224131522|ref|XP_002321105.1| predicted protein [Populus trichocarpa]
gi|222861878|gb|EEE99420.1| predicted protein [Populus trichocarpa]
Length = 837
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 271/529 (51%), Positives = 361/529 (68%), Gaps = 1/529 (0%)
Query: 28 LQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEK 87
+ G VHE+ G G FK+TSV GH+ +DF +KY +W DP +LF P K
Sbjct: 1 MHSRKGTTEVHEFEGMFNGFRAYFKVTSVIGHVFSVDFPAKYQDWAATDPADLFQAPIHK 60
Query: 88 REATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRAR 147
EA PK + L+ EA+ C LVLWLDCD+EGENICFEV++ Q N + + V+RAR
Sbjct: 61 AEANPKAHICRHLSQEARGCNHLVLWLDCDREGENICFEVIQCTGFQAN-DDRRKVYRAR 119
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS++T+KDI AM LV+PN +EA +VDARQE+DL++G AFTR+QT FFQGKYG+LD+ +
Sbjct: 120 FSSVTEKDILKAMNCLVEPNEYEALAVDARQEIDLKVGVAFTRFQTSFFQGKYGNLDSRV 179
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNV 267
ISYGPCQTPTLGFCV+R+ +I TFKPE +W L + ++G + + W R +FD +
Sbjct: 180 ISYGPCQTPTLGFCVQRYLQITTFKPEKFWALRPHVMVDGYELQLEWERHKLFDLDVALM 239
Query: 268 FFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQG 327
F K V +++ + V D+ +SK +P LNTV L+++ASS LG GP MQ+AERLY QG
Sbjct: 240 FQKLVLQDRILEVTDMSEKQESKGRPPGLNTVNLLKIASSALGFGPQVTMQLAERLYIQG 299
Query: 328 YVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITP 387
++SYPRTE+T YP +FD L ++P WGD+V+ +LS G KP+ GKD GDHPPITP
Sbjct: 300 FISYPRTESTAYPSSFDFKGTLGALANNPMWGDYVQGLLSGGYHKPQSGKDAGDHPPITP 359
Query: 388 TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
+ A L DAWRLY Y+ +HF+GT+ D YT+ +FS+ E F ++ GF
Sbjct: 360 MRSANEDMLGRDAWRLYQYVCQHFLGTVSPDCKYTRTKVEFSIGGEFFHCIGLHVTVKGF 419
Query: 448 TGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDAS 507
T +M W A+ +++P F GD I + V++ E +T PPDYL+ESELISLMEK+GIGTDAS
Sbjct: 420 TSIMPWLAVSEKNLPQFAKGDKIEVSKVELFEGQTVPPDYLSESELISLMEKNGIGTDAS 479
Query: 508 IPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
I VHINNIC+RNYV V +GR+LVPT+LGI L+ GYQ ID +L P +R
Sbjct: 480 ISVHINNICERNYVQVQAGRKLVPTALGITLIRGYQCIDPDLCLPDIRG 528
>gi|357159190|ref|XP_003578369.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Brachypodium
distachyon]
Length = 868
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 269/524 (51%), Positives = 357/524 (68%), Gaps = 1/524 (0%)
Query: 33 GACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP 92
G+ VHE+ G G F++TSV GH+ +DF Y NW+ DP++LF+ P + E P
Sbjct: 32 GSTDVHEFDGTFQGSQAFFRVTSVIGHVFSVDFPPAYQNWEGTDPVDLFNAPVLRSECNP 91
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT 152
K+ + LA EA+ C +L+LWLDCD+EGENIC+EV+ N + ++RA+FS++T
Sbjct: 92 KVHIRRHLAQEARGCTYLILWLDCDREGENICYEVINCTGIPEN-EVGRRIFRAKFSSVT 150
Query: 153 DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGP 212
+KDI AM NLV PN EA SVDARQE+DL++G AFTR+QT++FQGKYG+LD+ +ISYGP
Sbjct: 151 EKDISNAMDNLVLPNKDEALSVDARQEIDLKVGVAFTRFQTRYFQGKYGNLDSRVISYGP 210
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAV 272
CQTPTLGFCV+R+ +I TFKPE +W L + +G + + W R +FD +F K V
Sbjct: 211 CQTPTLGFCVQRYQQINTFKPEKFWSLRTYVIKDGDEIQLEWDRKKLFDFDVTVMFQKMV 270
Query: 273 EKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYP 332
+ + V D+ + K +P LNTV L++VASS LG+GP AM +AERLYTQGY+SYP
Sbjct: 271 ANDGTLIVTDISVKEECKARPSGLNTVNLLKVASSALGIGPQTAMHMAERLYTQGYISYP 330
Query: 333 RTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLAT 392
RTE+T YP +FD +VL +P W +++R ++ G KPR+G D GDHPPITP + A+
Sbjct: 331 RTESTAYPASFDFRSVLSALVHNPLWSNNIRTLMDAGFVKPRQGHDAGDHPPITPMRSAS 390
Query: 393 RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
L+ DAWRLY YI +HFIGT+ D YT+ +F+ E+F + GFT +M
Sbjct: 391 EEALETDAWRLYQYICQHFIGTVSPDCRYTRTAVEFTSGGEIFRCVGHRVTSKGFTSIMP 450
Query: 453 WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHI 512
W A+ ++P FK GD + I V + E TTPPDYL+ESELISLMEK+GIGTDASIPVHI
Sbjct: 451 WLAVAENNLPTFKNGDTVSIHKVDIYEGSTTPPDYLSESELISLMEKNGIGTDASIPVHI 510
Query: 513 NNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
NNI +RNYV V SGRRLVPT+LG L+ GYQ ID +L P +RS
Sbjct: 511 NNISERNYVQVNSGRRLVPTALGTTLIRGYQCIDADLCLPDIRS 554
>gi|307105927|gb|EFN54174.1| hypothetical protein CHLNCDRAFT_53167 [Chlorella variabilis]
Length = 860
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 269/524 (51%), Positives = 359/524 (68%), Gaps = 8/524 (1%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
VH + G FKMTSV GH++ +DF ++Y +WDK DP LF PT K EA PK ++
Sbjct: 38 VHTFDATFRGRPAQFKMTSVIGHVLSIDFPAEYQSWDKTDPGTLFDAPTIKCEANPKARV 97
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L EAK ++LVLWLDCD+EGENICFEVM+ +N + + V+RARFSAI+ +I
Sbjct: 98 CRHLQGEAKGADYLVLWLDCDREGENICFEVMDNTVRWMNRVADQQVYRARFSAISAPEI 157
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTR---YQTKFFQGKYGDLDASLISYGPC 213
+ AM +LV+PN EA +VDARQELDL++G AFTR +Q++FFQ KYG+LD+++ISYGPC
Sbjct: 158 RQAMASLVEPNRAEALAVDARQELDLKVGVAFTRGCRFQSRFFQAKYGNLDSAVISYGPC 217
Query: 214 QTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVE 273
QTPTL FCVERH I +F+PEP+W++ + G A+++ W RG +FD VF + V
Sbjct: 218 QTPTLNFCVERHQAIVSFQPEPFWVVRPRASQAGHALNLEWGRGRVFDGEVGAVFQRLVH 277
Query: 274 KEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333
+ K V+++ + P L VEL++ ASS LG+GP +AMQ+AERLYTQGY+SYPR
Sbjct: 278 EAKQVSMILTPVDPRD---PPCLCAVELLKTASSSLGIGPAYAMQVAERLYTQGYLSYPR 334
Query: 334 TETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR 393
TE+T YP NFD +L Q + P WG++ ++ + P+ G DVGDHPPITP + A+
Sbjct: 335 TESTAYPPNFDFHTLLAAQRAHPVWGEYAASLM-GAFAAPKGGVDVGDHPPITPVRCASE 393
Query: 394 TQLDG-DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
+L G D WRLYD++ RHF+G+L D V + A + E F +L PG+ +M
Sbjct: 394 AELGGGDTWRLYDFVARHFLGSLSPDCVVRKTRASLAAGTESFAASGTLVLRPGYAAIMP 453
Query: 453 WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHI 512
W A++NE +P K GD IP+ V++ + KT+PPDYLTE+ELI MEKHGIGTDASIP HI
Sbjct: 454 WKAVQNEPLPPMKAGDTIPMSEVELHQGKTSPPDYLTEAELIERMEKHGIGTDASIPTHI 513
Query: 513 NNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
NNIC+RNYV++ SGRR+VPT LGI LV GYQ ID EL P +R+
Sbjct: 514 NNICERNYVSIQSGRRVVPTELGITLVRGYQLIDPELCRPQVRA 557
>gi|115479969|ref|NP_001063578.1| Os09g0500600 [Oryza sativa Japonica Group]
gi|113631811|dbj|BAF25492.1| Os09g0500600 [Oryza sativa Japonica Group]
gi|215695029|dbj|BAG90220.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 866
Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 275/557 (49%), Positives = 370/557 (66%), Gaps = 13/557 (2%)
Query: 8 LVPASEIKLARPSL-ISLLTPLQ--RMN---GACSVHEWVGPLFGDLVLFKMTSVCGHIM 61
+ P + +PS+ +S+ + L RM+ G+ VHE+ G G FK+TSV GH++
Sbjct: 1 MAPTVLMVAEKPSIALSIASALSGGRMSTRKGSTDVHEFDGMFQGSHAFFKVTSVIGHVL 60
Query: 62 GLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGE 121
+DF Y NW+ DP++LF P + E PK + LA EA+ C +LVLWLDCD+EGE
Sbjct: 61 SVDFPPAYQNWEGTDPMDLFVAPVLRSECNPKAHIRRHLAQEARGCTYLVLWLDCDREGE 120
Query: 122 NICFEVMEAV---RHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQ 178
NIC+EV++ + ++ + ++RA+FS++T+KDI AM NLV P+ EA +VDARQ
Sbjct: 121 NICYEVIDCTGIPKSEVG----RRIFRAKFSSVTEKDIMDAMNNLVLPSKDEALAVDARQ 176
Query: 179 ELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
E+DL++G AFTR+QT++FQGKYG+LD+ +ISYGPCQTPTLGFCV+R+ +I TFKPE +W
Sbjct: 177 EIDLKVGVAFTRFQTRYFQGKYGNLDSRVISYGPCQTPTLGFCVQRYQQITTFKPEKFWS 236
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
L + +G + + W R +FD +F K V + + V D+ + K +P LNT
Sbjct: 237 LKTYVIKDGNEIQLEWDRKKLFDFDVTVMFQKMVASDGILKVTDISVKEECKARPPGLNT 296
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
V L++VASS LG+GP AM +AERLYTQG++SYPRTE+T YP +FD + L +P W
Sbjct: 297 VNLLKVASSALGIGPQTAMHLAERLYTQGFISYPRTESTAYPSSFDFRSALAALAHNPLW 356
Query: 359 GDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGD 418
+ VR +L G KP++G D GDHPPITP +LAT L DAWRLY YI +HFIGT+ D
Sbjct: 357 SNDVRTLLDTGFVKPKQGHDAGDHPPITPMRLATEEALGTDAWRLYQYICQHFIGTVSPD 416
Query: 419 LVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMV 478
YT+ +F+ E F + GFT +M W A+ +IP +K GD + I V +
Sbjct: 417 CRYTRTSIEFTSGGETFHCVGNRVTSKGFTSIMPWLAVSENNIPAYKKGDAVSIHKVDIY 476
Query: 479 ERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
E TTPPDYL+ESELISLMEK+GIGTDASIPVH+NNIC+RNYV V SGRRLVPT LG L
Sbjct: 477 EGSTTPPDYLSESELISLMEKNGIGTDASIPVHVNNICERNYVQVNSGRRLVPTPLGTTL 536
Query: 539 VHGYQKIDRELVEPTMR 555
+ GYQ ID +L P +R
Sbjct: 537 IRGYQCIDADLCLPDIR 553
>gi|218202402|gb|EEC84829.1| hypothetical protein OsI_31918 [Oryza sativa Indica Group]
Length = 866
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 275/557 (49%), Positives = 369/557 (66%), Gaps = 13/557 (2%)
Query: 8 LVPASEIKLARPSL-ISLLTPLQ--RMN---GACSVHEWVGPLFGDLVLFKMTSVCGHIM 61
+ P + +PS+ +S+ + L RM+ G+ VHE+ G G FK+TSV GH++
Sbjct: 1 MAPTVLMVAEKPSIALSIASALSGGRMSTRKGSTDVHEFDGMFQGSHAFFKVTSVIGHVL 60
Query: 62 GLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGE 121
+DF Y NW+ DP++LF P + E PK + LA EA+ C +LVLWLDCD+EGE
Sbjct: 61 SVDFPPAYQNWEGTDPMDLFVAPVLRSECNPKAHIRRHLAQEARGCTYLVLWLDCDREGE 120
Query: 122 NICFEVMEAV---RHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQ 178
NIC+EV++ + ++ + ++RA+FS++T+KDI AM NLV P+ EA +VDARQ
Sbjct: 121 NICYEVIDCTGIPKSEVG----RRIFRAKFSSVTEKDIMDAMNNLVLPSKDEALAVDARQ 176
Query: 179 ELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
E+DL++G AFTR+QT++FQGKYG+LD+ +ISYGPCQTPTLGFCV+R+ +I TFKPE +W
Sbjct: 177 EIDLKVGVAFTRFQTRYFQGKYGNLDSRVISYGPCQTPTLGFCVQRYQQITTFKPEKFWS 236
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
L + +G + + W R +FD +F K V + V D+ + K +P LNT
Sbjct: 237 LKTYVIKDGNEIQLEWDRKKLFDFDVTVMFQKMVASYGILKVTDISVKEECKARPPGLNT 296
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
V L++VASS LG+GP AM +AERLYTQG++SYPRTE+T YP +FD + L +P W
Sbjct: 297 VNLLKVASSALGIGPQTAMHLAERLYTQGFISYPRTESTAYPSSFDFRSALAALAHNPLW 356
Query: 359 GDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGD 418
+ VR +L G KP++G D GDHPPITP +LAT L DAWRLY YI +HFIGT+ D
Sbjct: 357 SNDVRTLLDTGFVKPKQGHDAGDHPPITPMRLATEEALGTDAWRLYQYICQHFIGTVSPD 416
Query: 419 LVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMV 478
YT+ +F+ E F + GFT +M W A+ +IP +K GD + I V +
Sbjct: 417 CRYTRTSIEFTSGGETFHCVGNRVTSEGFTSIMPWLAVSENNIPAYKKGDAVSIHKVDIY 476
Query: 479 ERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
E TTPPDYL+ESELISLMEK+GIGTDASIPVH+NNIC+RNYV V SGRRLVPT LG L
Sbjct: 477 EGSTTPPDYLSESELISLMEKNGIGTDASIPVHVNNICERNYVQVNSGRRLVPTPLGTTL 536
Query: 539 VHGYQKIDRELVEPTMR 555
+ GYQ ID +L P +R
Sbjct: 537 IRGYQCIDADLCLPDIR 553
>gi|237838573|ref|XP_002368584.1| DNA topoisomerase III beta-1, putative [Toxoplasma gondii ME49]
gi|211966248|gb|EEB01444.1| DNA topoisomerase III beta-1, putative [Toxoplasma gondii ME49]
Length = 841
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 266/524 (50%), Positives = 356/524 (67%), Gaps = 18/524 (3%)
Query: 36 SVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK 95
SV E+ G G+ VLFK+TS GHI DF ++N+W+K +P+ELF P K EA K +
Sbjct: 38 SVWEFSGSFRGEAVLFKVTSTAGHIYQTDFPRQFNDWEKTNPIELFDAPVVKVEANAKHR 97
Query: 96 LPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKD 155
LPA L EA C+ LVLWLDCD+EGENICFE+ WRA+FSA+ D
Sbjct: 98 LPAHLQKEAHGCKHLVLWLDCDREGENICFEI----------------WRAKFSALAPAD 141
Query: 156 IKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQT 215
I+ AM L PN EA SVDARQELDL++GCAFTR+QT++FQGKYGDLDASL+SYGPCQT
Sbjct: 142 IQQAMRTLGTPNKNEADSVDARQELDLKVGCAFTRFQTQYFQGKYGDLDASLVSYGPCQT 201
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKE 275
PTL FCV+R+D I F+PE ++ LD ++ + + + W RG +FD T + + V
Sbjct: 202 PTLQFCVQRYDDIHAFQPETFYTLDTSIRVGEQELFLEWERGQVFDSVTAHTYKDIVSAR 261
Query: 276 KHVTVV-DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRT 334
V VV DV + +PQALNTV ++++AS LGMGP AMQ AERLY G V+YPRT
Sbjct: 262 GAVAVVVDVTEKEEKMPRPQALNTVNMLKLASQRLGMGPQQAMQTAERLYLSGKVTYPRT 321
Query: 335 ETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRT 394
ET +YPE+FDL Q S+P WG +V+E+LS+G+++PR G D GDHPPITP AT
Sbjct: 322 ETCKYPESFDLRGTAAAQASNPYWGGYVKELLSSGLARPRDGVDAGDHPPITPVCSATEA 381
Query: 395 QLDG-DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
+ G DAW LY+ I RHF+ ++ D + ++ F V +E+F++ +++L GFT +M
Sbjct: 382 DVGGGDAWALYELITRHFLASISPDCRFLKRKVTFCVNEEIFSLSGRHMLDGGFTRIMRG 441
Query: 454 SAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
MK+ SIPDF+ D +P+ + + +T PP +L+ES+L+ LMEKHGIGTDAS+ HIN
Sbjct: 442 DGMKDVSIPDFRKADQVPLHKISVGSGQTHPPPFLSESDLLGLMEKHGIGTDASMATHIN 501
Query: 514 NICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
NIC+RNYV++ S RRL PT LG+ LVHGY +ID +LV P++R++
Sbjct: 502 NICERNYVSLVSNRRLEPTKLGVCLVHGYMQIDPDLVLPSVRAS 545
>gi|384249381|gb|EIE22863.1| prokaryotic type I DNA topoisomerase [Coccomyxa subellipsoidea
C-169]
Length = 866
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 278/557 (49%), Positives = 363/557 (65%), Gaps = 9/557 (1%)
Query: 8 LVPASEIKLARPSL-ISLLTPLQRMNGA-----CSVHEWVGPLFGDLVLFKMTSVCGHIM 61
LVP + +PSL +S+ T L + VHEW G G F+MTSV GH++
Sbjct: 4 LVPIVLLVAEKPSLALSIATFLSQSQARYRKSYLDVHEWDGKFQGRAAHFRMTSVIGHVL 63
Query: 62 GLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGE 121
+DF KY NW+ DP LF PT K EATPK + L EA+ C +LVLWLDCD+EGE
Sbjct: 64 SIDFPPKYQNWETTDPASLFDAPTVKTEATPKAHVCKHLQQEARGCSYLVLWLDCDREGE 123
Query: 122 NICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELD 181
NICFEVM+ + + V+RARFSAI+ +I AAM L +PN EA +VDARQELD
Sbjct: 124 NICFEVMDNTLKWMVRVPGQQVFRARFSAISAPEILAAMERLGEPNRAEAEAVDARQELD 183
Query: 182 LRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDL 241
L++G AFTR+QT++FQGKYG+LDAS+ISYGPCQTPTL FCV+RH I F+PE YW +
Sbjct: 184 LKVGVAFTRFQTRYFQGKYGNLDASVISYGPCQTPTLFFCVQRHQLITAFQPEDYWTIRP 243
Query: 242 TLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVEL 301
+ + V WSRG +FD+ +F + V + + + V+V + + + +P LNTVEL
Sbjct: 244 NCGVCVFRIDVEWSRGRLFDRDVALLFQRIVTEARALRCVEVSAKEERRQRPNGLNTVEL 303
Query: 302 MRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDH 361
M+ ASS +GM P AM+ AE LYT GY+SYPRTE+T YP FD VL + P WG++
Sbjct: 304 MKTASSAMGMSPQQAMRCAEGLYTSGYISYPRTESTAYPPGFDFHEVLVEMRRHPIWGEY 363
Query: 362 VREVLSNG-ISKPRKGKDVGDHPPITPTKLATRTQL-DGDAWRLYDYIVRHFIGTLCGDL 419
++ +G + P+ G D GDHPPITP AT +L GD WRLYDYI RHF+G+L D
Sbjct: 364 AAGLMGHGAFAPPKGGHDAGDHPPITPIASATEAELGGGDDWRLYDYIARHFLGSLSPDC 423
Query: 420 VYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVE 479
V + A F+ +E F+ + GFT VM W A++ E +P G+++PI V++ +
Sbjct: 424 VLRRTTAAFAAGNERFSATGVAPVRAGFTAVMPWKAVQGEPLPPLHEGEILPITEVELKQ 483
Query: 480 RKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
KT+PPDYLTESELI LMEKHGIGTDASI VHI +C+R YV++ SGRRL+PT LG+ LV
Sbjct: 484 GKTSPPDYLTESELIGLMEKHGIGTDASISVHIAKVCER-YVSIQSGRRLMPTELGVTLV 542
Query: 540 HGYQKIDRELVEPTMRS 556
GYQ ID +L P +RS
Sbjct: 543 RGYQLIDPDLCLPLVRS 559
>gi|401401464|ref|XP_003881018.1| DNA topoisomerase, related [Neospora caninum Liverpool]
gi|325115430|emb|CBZ50985.1| DNA topoisomerase, related [Neospora caninum Liverpool]
Length = 924
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 273/568 (48%), Positives = 360/568 (63%), Gaps = 51/568 (8%)
Query: 36 SVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK 95
SV E+ G G+ V FK+TS GHI DF +YN+W+K +P+ELF P K EA PK +
Sbjct: 38 SVWEFPGTFRGEAVHFKVTSTAGHIFQTDFPRQYNDWEKTNPVELFDAPVVKVEANPKHR 97
Query: 96 LPAFLANEAKDCEFLVLWLDCDKEGENICFEV---------------------------- 127
LPA L EA C+FLVLWLDCD+EGENICFEV
Sbjct: 98 LPAHLQKEAHGCKFLVLWLDCDREGENICFEVIGIVAPHLPKLPGGQQQARRARLRKHTS 157
Query: 128 ---------------------MEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKP 166
+ AV + K +WRA+FSA+ DI+ AM L P
Sbjct: 158 REGETPATGSNRQAQESLEQTLSAVAGMVPPKRCKKIWRAKFSALAHADIQKAMRTLGSP 217
Query: 167 NIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHD 226
N E+ SVDARQELDL++GCAFTR+QT++FQGKYGDLDASL+SYGPCQTPTL FCV+R+D
Sbjct: 218 NKNESDSVDARQELDLKVGCAFTRFQTQYFQGKYGDLDASLVSYGPCQTPTLQFCVQRYD 277
Query: 227 KIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV-DVQS 285
I F+PE ++ LD ++ + + + W RG +FD + + V + V VV DV
Sbjct: 278 DIHAFQPETFYTLDTSIRVGEQELFLDWERGQVFDSVVAHTYKDVVSAQGGVAVVVDVSE 337
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDL 345
+ +PQALNTV ++++AS LGMGP AMQ AERLY G V+YPRTET +YP++FDL
Sbjct: 338 KEEKLPRPQALNTVNMLKLASQRLGMGPQQAMQTAERLYLSGIVTYPRTETCKYPDSFDL 397
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDG-DAWRLY 404
Q S+P WG +V+E+LS+G+++PR G D GDHPPITP + AT + G DAW LY
Sbjct: 398 RGTAAAQTSNPYWGGYVKELLSSGLARPRDGVDAGDHPPITPVRSATEADVGGGDAWALY 457
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
+ I RHF+ ++ D + ++ FSV DE+F++ +++L GFT VM MK+ SIPDF
Sbjct: 458 ELITRHFLASISPDCRFLKRKVTFSVNDEIFSLSGRHMLDGGFTRVMRGDGMKDVSIPDF 517
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
+ GD +P+ V + +T PP +L+ES+L+ LMEKHGIGTDAS+ HINNIC+RNYV++
Sbjct: 518 RKGDQVPLHKVAVGSGQTHPPPFLSESDLLGLMEKHGIGTDASMATHINNICERNYVSLV 577
Query: 525 SGRRLVPTSLGIVLVHGYQKIDRELVEP 552
S RRL PT LG+ LVHGY ID +LV P
Sbjct: 578 SNRRLEPTKLGVCLVHGYMAIDPDLVLP 605
>gi|119579893|gb|EAW59489.1| topoisomerase (DNA) III beta, isoform CRA_b [Homo sapiens]
Length = 516
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 269/423 (63%), Positives = 318/423 (75%), Gaps = 2/423 (0%)
Query: 141 KTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKY 200
KTV+RARFS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKY
Sbjct: 9 KTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKY 68
Query: 201 GDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHI 259
GDLD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +
Sbjct: 69 GDLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRV 128
Query: 260 FDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQI 319
FD+ +F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ
Sbjct: 129 FDREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQT 188
Query: 320 AERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDV 379
AERLYTQGY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D
Sbjct: 189 AERLYTQGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDA 248
Query: 380 GDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA 439
GDHPPITP K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E+FT
Sbjct: 249 GDHPPITPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPELFTCSG 308
Query: 440 KYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
K +L PGFT VM W ++ ES+P + GD P+ VKM+E++T PPDYLTE+ELI+LME
Sbjct: 309 KTVLSPGFTEVMPWQSVPLEESLPTCQRGDAFPVGEVKMLEKQTNPPDYLTEAELITLME 368
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAY 558
KHGIGTDASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA
Sbjct: 369 KHGIGTDASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAV 428
Query: 559 RVQ 561
Q
Sbjct: 429 EKQ 431
>gi|79323918|ref|NP_001031463.1| DNA topoisomerase III [Arabidopsis thaliana]
gi|51969720|dbj|BAD43552.1| putative DNA topoisomerase III beta [Arabidopsis thaliana]
gi|51969988|dbj|BAD43686.1| putative DNA topoisomerase III beta [Arabidopsis thaliana]
gi|330253526|gb|AEC08620.1| DNA topoisomerase III [Arabidopsis thaliana]
Length = 838
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 260/497 (52%), Positives = 343/497 (69%), Gaps = 1/497 (0%)
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
+M DF KY NW +DP +LF P K+E+ PK + L+NEA+ C ++VLWLDCD+E
Sbjct: 34 VMFSDFPEKYQNWATIDPQDLFDAPIIKKESNPKAHICRHLSNEARGCSYMVLWLDCDRE 93
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENICFEV+E+ + +S + V+RARFS++T+KDI AM NLV+PN EA +VDARQE
Sbjct: 94 GENICFEVIESTGFDMK-DSKRKVYRARFSSVTEKDISKAMDNLVEPNRDEALAVDARQE 152
Query: 180 LDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLL 239
+DL++G AF+R+QT +FQGKY +LD +ISYGPCQTPTLGFCV+R+ I TFKPE +W L
Sbjct: 153 IDLKVGVAFSRFQTSYFQGKYQNLDCRVISYGPCQTPTLGFCVQRYMHINTFKPEKFWAL 212
Query: 240 DLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTV 299
+ +G + + W R +FD VF K V + + V+DV + K +P LNTV
Sbjct: 213 RPYIRKDGYELQLEWERRRLFDLEAATVFQKLVVEGRTAKVMDVSEKQEVKGRPAGLNTV 272
Query: 300 ELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWG 359
L++VASS LG GP AM +AERLYTQG++SYPRTE+T YP +FD LR Q S+P WG
Sbjct: 273 NLLKVASSALGFGPQTAMHLAERLYTQGFISYPRTESTAYPSSFDFTDTLRAQVSNPVWG 332
Query: 360 DHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDL 419
+V+ +LS+G P+ G D GDHPPITP + AT + GDAWRLY Y+ +HF+GT+ +
Sbjct: 333 GYVQRLLSDGFHMPKSGTDAGDHPPITPMRAATEVMVGGDAWRLYQYVCQHFLGTVSPNC 392
Query: 420 VYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVE 479
Y + + S+ E F + + GFT +M WSA+ + +P F G+ I + V++ E
Sbjct: 393 KYIRTKVELSIGGETFHCTGQRVTEKGFTAIMPWSAVDEKKLPSFLKGERIEVLRVELYE 452
Query: 480 RKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
T PPDYLTESELISLMEKHGIGTDASI VHINNI +RNYV V SGR++VPT+LGI L+
Sbjct: 453 GNTAPPDYLTESELISLMEKHGIGTDASIAVHINNIGERNYVQVQSGRKMVPTALGITLI 512
Query: 540 HGYQKIDRELVEPTMRS 556
GYQ ID +L P +RS
Sbjct: 513 RGYQCIDPDLCLPDIRS 529
>gi|221505540|gb|EEE31185.1| DNA topoisomerase III beta-1, putative [Toxoplasma gondii VEG]
Length = 842
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 265/525 (50%), Positives = 354/525 (67%), Gaps = 19/525 (3%)
Query: 36 SVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK 95
SV E+ G G+ VLFK+TS GHI DF ++N+W+K +P+ELF P K EA K +
Sbjct: 38 SVWEFSGSFRGEAVLFKVTSTAGHIYQTDFPRQFNDWEKTNPIELFDAPVVKVEANAKHR 97
Query: 96 LPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKD 155
LPA L EA C+ LVLWLDCD+EGENICFE+ WRA+FSA+ D
Sbjct: 98 LPAHLQKEAHGCKHLVLWLDCDREGENICFEI----------------WRAKFSALAPAD 141
Query: 156 IKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQT 215
I+ AM L PN EA SVDARQELDL++GCAFTR+QT++FQGKYGDLDASL+SYGPCQT
Sbjct: 142 IQQAMRTLGTPNKNEADSVDARQELDLKVGCAFTRFQTQYFQGKYGDLDASLVSYGPCQT 201
Query: 216 PTLGFCVERHDKIRTFKPEPYW-LLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEK 274
PTL FCV+R+D I F+PE ++ + +L + + W RG +FD T + + V
Sbjct: 202 PTLQFCVQRYDDIHAFQPETFYTVCKSVFDLREQELFLEWERGQVFDSVTAHTYKDIVSA 261
Query: 275 EKHVTVV-DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333
V VV DV + +PQALNTV ++++AS LGMGP AMQ AERLY G V+YPR
Sbjct: 262 RGAVAVVVDVTEKEEKMPRPQALNTVNMLKLASQRLGMGPQQAMQTAERLYLSGKVTYPR 321
Query: 334 TETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR 393
TET +YPE+FDL Q S+P WG +V+E+LS+G+++PR G D GDHPPITP AT
Sbjct: 322 TETCKYPESFDLRGTAAAQASNPYWGGYVKELLSSGLARPRDGVDAGDHPPITPVCSATE 381
Query: 394 TQLDG-DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
+ G DAW LY+ I RHF+ ++ D + ++ F V +E+F++ +++L GFT +M
Sbjct: 382 ADVGGGDAWALYELITRHFLASISPDCRFLKRKVTFCVNEEIFSLSGRHMLDGGFTRIMR 441
Query: 453 WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHI 512
MK+ SIPDF+ D +P+ + + +T PP +L+ES+L+ LMEKHGIGTDAS+ HI
Sbjct: 442 GDGMKDVSIPDFRKADQVPLHKISVGSGQTHPPPFLSESDLLGLMEKHGIGTDASMATHI 501
Query: 513 NNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
NNIC+RNYV++ S RRL PT LG+ LVHGY +ID +LV P++R++
Sbjct: 502 NNICERNYVSLVSNRRLEPTKLGVCLVHGYMQIDPDLVLPSVRAS 546
>gi|71664077|ref|XP_819023.1| DNA topoisomerase III [Trypanosoma cruzi strain CL Brener]
gi|70884306|gb|EAN97172.1| DNA topoisomerase III, putative [Trypanosoma cruzi]
Length = 852
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 266/524 (50%), Positives = 356/524 (67%), Gaps = 5/524 (0%)
Query: 34 ACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPK 93
A V+E+ G F FK+TS GH+ DFT ++ +WD+ + +LFS P ++ K
Sbjct: 33 ALPVYEYSGYFFNTPAYFKVTSTTGHVFSCDFTPQHQSWDRTEEEDLFSAPVVWKDEAGK 92
Query: 94 LKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITD 153
+ LA+EA+ C+ LVLWLDCD+EGENICFEVM+ VR +I+ + +WRA+FSAIT
Sbjct: 93 VS--RHLAHEAEGCDTLVLWLDCDREGENICFEVMQVVRR--SIHDMRDIWRAKFSAITR 148
Query: 154 KDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPC 213
++I A +L KPN + +V RQELDL++G AFTRYQTK+FQGKYGDLD+S++SYGPC
Sbjct: 149 EEITHAFLHLGKPNKNVSDAVTCRQELDLKVGVAFTRYQTKYFQGKYGDLDSSVVSYGPC 208
Query: 214 QTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVE 273
QTPTL FCV+RHD+I FKPE YW L N G ++ W+RG +FD + + V
Sbjct: 209 QTPTLAFCVQRHDEILNFKPENYWKLVPVSNRFGSLMTFDWARGRVFDDLMARLLHQKVS 268
Query: 274 KEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333
+ V DV ++ +P ALNTVELM+VAS LGMGPHHAMQIAE LY GY+SYPR
Sbjct: 269 HHRAAKVTDVSVGVDTRARPTALNTVELMKVASKALGMGPHHAMQIAENLYIGGYISYPR 328
Query: 334 TETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR 393
TE+T YP +F+ +A L QE SP WG++V+E+L++G ++P+ GKD GDHPPITP +LAT
Sbjct: 329 TESTAYPSSFNFMAALTAQERSPIWGNYVQELLAHGHTRPKAGKDAGDHPPITPMRLATP 388
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
+L GD+WRLY+YI RHFI +L D T+ + E+F+ K + PGFT V+
Sbjct: 389 QELSGDSWRLYEYIARHFIASLSPDCKLTRTKLLIEIGGELFSFTGKVVEDPGFTTVLPQ 448
Query: 454 SAMKNESIP-DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHI 512
A+K++ +P + + G PI V++ +T PP YLTE++LI LMEKHGIGTDASI H+
Sbjct: 449 FAVKDDKVPTNIQVGSDFPISDVRLQAGQTQPPGYLTEADLIGLMEKHGIGTDASISQHV 508
Query: 513 NNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
NNI +R Y V GR + PT LG+VL+HG + ID ELV P +RS
Sbjct: 509 NNIVERGYCAVKPGRVMEPTKLGVVLIHGIKSIDPELVLPLVRS 552
>gi|407420057|gb|EKF38435.1| DNA topoisomerase III, putative [Trypanosoma cruzi marinkellei]
Length = 851
Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust.
Identities = 267/524 (50%), Positives = 353/524 (67%), Gaps = 5/524 (0%)
Query: 34 ACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPK 93
A V+E+ G F FK+TS GH+ DFT ++ NWD+ + +LFS P ++ K
Sbjct: 33 ALPVYEYSGHFFNTPAYFKVTSTTGHVFSCDFTPQHQNWDRTEEEDLFSAPVVWKDEAGK 92
Query: 94 LKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITD 153
+ LA+EA+ C+ LVLWLDCD+EGENICFEVM+ VR +I + +WRA+FSAIT
Sbjct: 93 VS--RHLAHEAEGCDTLVLWLDCDREGENICFEVMQVVRR--SIYDMRDIWRAKFSAITR 148
Query: 154 KDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPC 213
++I A NL KPN + +V RQELDL++G AFTRYQTK+FQGKYGDLD+S++SYGPC
Sbjct: 149 EEITHAFLNLGKPNKNVSDAVTCRQELDLKVGVAFTRYQTKYFQGKYGDLDSSVVSYGPC 208
Query: 214 QTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVE 273
QTPTL FCV+RHD+I FKPE YW L N G ++ W RG +FD + + V
Sbjct: 209 QTPTLAFCVQRHDEILNFKPENYWKLVPVSNRFGSLMTFDWVRGRVFDDLMARLLHQKVS 268
Query: 274 KEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333
+ VVDV ++ +P ALNTVELM+VAS LGMGPHHAMQ+AE LY GY+SYPR
Sbjct: 269 HHRSAKVVDVSVGVDTRARPTALNTVELMKVASKALGMGPHHAMQVAENLYIGGYISYPR 328
Query: 334 TETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR 393
TE+T YP +F+ +A L QE SP WG++V+E+L+ G ++P+ GKD GDHPPITP +LAT
Sbjct: 329 TESTAYPSSFNFMAALAAQERSPIWGNYVQELLARGHTRPKAGKDAGDHPPITPMRLATP 388
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
+L GD+WRLY+YI RHFI +L D T+ + E+F K + PGFT V+
Sbjct: 389 QELSGDSWRLYEYIARHFIASLSPDCKLTRTKLLIEIGGELFNFTGKVVEDPGFTTVLPQ 448
Query: 454 SAMKNESIP-DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHI 512
A+K++ +P + + G PI V++ +T PP YLTE++LI LMEK+GIGTDASI H+
Sbjct: 449 FAVKDDKVPTNIQVGSDFPISDVRLQAGQTQPPGYLTEADLIGLMEKNGIGTDASISQHV 508
Query: 513 NNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
NNI +R Y V GR + PT LG+VL+HG + ID ELV P +RS
Sbjct: 509 NNIVERGYCAVKPGRVMEPTKLGVVLIHGIKSIDPELVLPLVRS 552
>gi|340372491|ref|XP_003384777.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Amphimedon
queenslandica]
Length = 849
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 280/541 (51%), Positives = 353/541 (65%), Gaps = 13/541 (2%)
Query: 34 ACSVHEWVGPLFGDL-------VLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTE 86
AC VHE+ G L +FKMTSVCGH+M LDF KYNNW+ DPL L+ T
Sbjct: 34 ACDVHEFQGKLAVPGGGGPGLAAMFKMTSVCGHVMSLDFQPKYNNWETTDPLLLYDAETM 93
Query: 87 KREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVM---EAVRHQININSPKTV 143
K+EA P L++P+FL E K ++LVLWLDCDKEGENIC+EV+ E V +T+
Sbjct: 94 KKEAIPSLRIPSFLRQEGKGVDYLVLWLDCDKEGENICYEVINEVEPVMKPPKTPRTQTI 153
Query: 144 WRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL 203
+RA+FSA+T+ I A NL PN E+RSVDARQELDLR+GC+FTR+QTK FQ Y L
Sbjct: 154 FRAKFSAVTEAAILHAFNNLGFPNWNESRSVDARQELDLRVGCSFTRFQTKLFQSLYSGL 213
Query: 204 DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDK 262
+ S+ISYGPCQTPTLGFCVERHD+I+ FKPE YW LD +++ + +S+ W + IFD
Sbjct: 214 NNSVISYGPCQTPTLGFCVERHDEIQHFKPEKYWKLDCSVSHSSSNPLSLQWDKERIFDH 273
Query: 263 STCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAER 322
+F + K +V V ++SK P L+TVE++R SS L + P AM IAER
Sbjct: 274 EVIKLFHLMLTHHKIASVESVSEKSRSKAPPLPLHTVEMLRACSSRLHISPKQAMDIAER 333
Query: 323 LYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDH 382
LYT+GY+SYPRTETT+YP FD +++ + + + ++L+ GI P GKDVGDH
Sbjct: 334 LYTEGYISYPRTETTKYPAGFDFKSIVSDLNKNEHFKEFTSQLLTGGIRPPSVGKDVGDH 393
Query: 383 PPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYL 442
PPITP + A R + W++Y+ I HF+ TL D Y Q FS+ E F+ L
Sbjct: 394 PPITPLRNAPREAVSDTQWKVYEMITCHFLATLFPDCKYKQTDVVFSLGGESFSWAGHTL 453
Query: 443 LHPGFTGVMTWSAMKN--ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKH 500
+ PGFT + TW A+ + ++ F G I + + E TTPP YLTESELISLMEKH
Sbjct: 454 IDPGFTLINTWQAIGSVPQTTAQFCKGQKWDIVQLGVSEHMTTPPGYLTESELISLMEKH 513
Query: 501 GIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRV 560
IGTDASIPVHI NIC RNYV + SGRRLVPT LGIVLVHGYQKID ELV+PTMRS
Sbjct: 514 AIGTDASIPVHIENICTRNYVLIQSGRRLVPTQLGIVLVHGYQKIDPELVKPTMRSEIEK 573
Query: 561 Q 561
Q
Sbjct: 574 Q 574
>gi|407853208|gb|EKG06290.1| DNA topoisomerase III, putative [Trypanosoma cruzi]
Length = 852
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 264/524 (50%), Positives = 355/524 (67%), Gaps = 5/524 (0%)
Query: 34 ACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPK 93
A V+E+ G F FK+TS GH+ DFT ++ +WD+ + +LFS P ++ K
Sbjct: 33 ALPVYEYSGYFFNTPAYFKVTSTTGHVFSCDFTPQHQSWDRTEEEDLFSAPVVWKDEAGK 92
Query: 94 LKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITD 153
+ LA+EA++C+ LVLWLDCD+EGENICFEVM+ VR +I+ + +WRA+FSAIT
Sbjct: 93 VS--RHLAHEAEECDTLVLWLDCDREGENICFEVMQVVRR--SIHDMRDIWRAKFSAITR 148
Query: 154 KDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPC 213
++I A +L KPN + +V RQELDL++G AFTRYQTK+FQGKYGDLD+S++SYGPC
Sbjct: 149 EEITHAFLHLGKPNKNVSDAVTCRQELDLKVGVAFTRYQTKYFQGKYGDLDSSVVSYGPC 208
Query: 214 QTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVE 273
QTPTL FCV+RHD+I FKPE YW L N G ++ W+RG +FD + + V
Sbjct: 209 QTPTLAFCVQRHDEILNFKPENYWKLVPVSNRFGSLMTFDWARGRVFDDLMARLLHQKVS 268
Query: 274 KEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333
+ V DV ++ +P ALNTVELM+VAS LGMGPHHAMQIAE LY GY+SYPR
Sbjct: 269 HHRAAKVTDVSVGVDTRARPTALNTVELMKVASKALGMGPHHAMQIAENLYIGGYISYPR 328
Query: 334 TETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR 393
TE+T YP +F+ + L QE SP WG++V+E+L+ G ++P+ GKD GDHPPITP +LAT
Sbjct: 329 TESTAYPSSFNFMTALTAQERSPIWGNYVQELLARGHTRPKAGKDAGDHPPITPMRLATP 388
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
+L GD+WRLY+YI RHFI +L D T+ + E+F+ K + PGFT V+
Sbjct: 389 QELSGDSWRLYEYIARHFIASLSPDCKLTRTKLLIEIGGELFSFTGKVVEDPGFTTVLPQ 448
Query: 454 SAMKNESIP-DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHI 512
A+K++ +P + + G PI V++ +T PP YLTE++LI LMEK+GIGTDASI H+
Sbjct: 449 FAVKDDKVPTNIQVGSDFPISDVRLQAGQTQPPGYLTEADLIGLMEKYGIGTDASISQHV 508
Query: 513 NNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
NNI +R Y V GR + PT LG+VL+HG + ID ELV P +RS
Sbjct: 509 NNIVERGYCAVKPGRVMEPTKLGVVLIHGIKSIDPELVLPLVRS 552
>gi|325189814|emb|CCA24294.1| PREDICTED: DNA topoisomerase 3beta1like isoform 1 putative [Albugo
laibachii Nc14]
Length = 928
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 260/518 (50%), Positives = 354/518 (68%), Gaps = 7/518 (1%)
Query: 50 LFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEF 109
L+K+TSV GH+ DF S Y+NWD VDP LF TEK+ + L L EA+ +
Sbjct: 49 LYKITSVTGHMYSCDFPSAYSNWDTVDPESLFQASTEKKLESKGLHQQ--LQKEARGADT 106
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQI-NINSPK----TVWRARFSAITDKDIKAAMWNLV 164
L+LWLDCD+EGENICFEV+E VR ++ N S K + RA+FSA+T KDI+ AM LV
Sbjct: 107 LILWLDCDREGENICFEVIETVRDRMQNAASLKFKEPLILRAKFSAVTKKDIQHAMETLV 166
Query: 165 KPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVER 224
PNI E+ +VDARQELDL++G AF+R+QT++FQG+YGDLD++L+SYGPCQTPTLGFCV+R
Sbjct: 167 APNIHESWAVDARQELDLKVGVAFSRFQTRYFQGRYGDLDSNLVSYGPCQTPTLGFCVDR 226
Query: 225 HDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQ 284
D+I+ F+PEP+W +++ + + + + W RGHIFD + + + + V V+
Sbjct: 227 FDQIQQFQPEPFWTIEVGITKDNQTIKLDWDRGHIFDHEAVCALNEVISDKNILLVSSVK 286
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD 344
S ++ +P LNTV+L++ AS L MGP MQIAERLY QGY+SYPRTE+T YP++FD
Sbjct: 287 ESEVTRFRPTPLNTVQLLQHASKQLSMGPFTTMQIAERLYLQGYISYPRTESTSYPDSFD 346
Query: 345 LVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLY 404
+ + L Q + WG +V +L G +P+KG DVGDHPPITP + L G+ RLY
Sbjct: 347 VESTLLQHTRNSHWGTYVENLLHRGYQRPKKGVDVGDHPPITPVRAVELKDLAGEMARLY 406
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
D+I R+FI T+ D F+ E F++ +L GFT ++T +++ + +PDF
Sbjct: 407 DFIARYFIATVSRDARLLATSVSFTCQTEKFSLTGHRVLDKGFTEILTSTSLVDTIVPDF 466
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
K G+++PI + + +T+PP +LTESELI LMEKHGIGTDASIP HINNIC+RNYV +
Sbjct: 467 KVGEVLPIARQNVRQGQTSPPGFLTESELIGLMEKHGIGTDASIPAHINNICERNYVRLG 526
Query: 525 SGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQA 562
SGR LVPT+LG+VLVHGY K+D ELV P +R+A Q
Sbjct: 527 SGRTLVPTNLGVVLVHGYYKVDPELVLPRVRAAIEEQC 564
>gi|339245323|ref|XP_003378587.1| DNA topoisomerase 3-beta-1 protein [Trichinella spiralis]
gi|316972491|gb|EFV56168.1| DNA topoisomerase 3-beta-1 protein [Trichinella spiralis]
Length = 819
Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust.
Identities = 268/520 (51%), Positives = 351/520 (67%), Gaps = 14/520 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTS CGH+M ++F KYN+WD+VDP LF K EA PKLK+ FLA+E + ++LVL
Sbjct: 1 MTSTCGHVMTMNFPKKYNDWDRVDPATLFHADVIKEEANPKLKMVNFLASEGRGVDYLVL 60
Query: 113 WLDCDKEGENICFEVMEAV----RHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNI 168
WLDCDKEGENICFEV++ V RH + + ++RA+FS++ +DI AM L +PN
Sbjct: 61 WLDCDKEGENICFEVIDIVQPMMRHPYD---QRAIYRAQFSSLAPQDILKAMSKLGRPNK 117
Query: 169 FEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKI 228
+A SVD RQELDLRIGCAFTR+QT+FF KYG++D+ LISYGPCQTPTLGFCV R D++
Sbjct: 118 LQAVSVDTRQELDLRIGCAFTRFQTRFFHEKYGNVDSKLISYGPCQTPTLGFCVARLDEM 177
Query: 229 RTFKPEPYWLLD--LTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSS 286
+ FKPEPYW + +T + G ++ +W+R +FD+ NV F ++++ TVV V ++
Sbjct: 178 KNFKPEPYWSMRAVVTSDGGGSTMTASWARQQLFDQEVFNVLFSRAKRQRFATVVSVTTT 237
Query: 287 TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLV 346
K K KP ALNTVEL+RV SS L +GP M +AE LYT G +SYPRTETT+Y NFD
Sbjct: 238 KKQKQKPAALNTVELLRVGSSRLHLGPQQTMHLAEHLYTNGLISYPRTETTRYASNFDFH 297
Query: 347 AVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDA-WRLYD 405
+VL S + + +L G+ P+ G+D GDHPPITP + + RLY+
Sbjct: 298 SVLGPLAKSGQFASVAQAILDRGVRMPKSGQDAGDHPPITPLGHVGEPKFTSTSEARLYE 357
Query: 406 YIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW---SAMKNESIP 462
Y+V HF+ TL G+ VY + + +A E FT+ + + PGFT V TW +A +N
Sbjct: 358 YVVCHFLATLMGNCVYELRTIQLDLAGERFTLTSSRPIDPGFTEVFTWQQVTANENSLPA 417
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT 522
GD + + M + +T+PPD+LTE+ELI+LME+HGIGTDASIPVHINNICQRNYVT
Sbjct: 418 TVNVGDRWNVVDLLMDQGQTSPPDHLTETELITLMERHGIGTDASIPVHINNICQRNYVT 477
Query: 523 VT-SGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
V S RRLVPT LG++LVHGY KID +LVE MRSA Q
Sbjct: 478 VQESSRRLVPTQLGVILVHGYWKIDCQLVEAEMRSAIEHQ 517
>gi|422293447|gb|EKU20747.1| DNA topoisomerase III [Nannochloropsis gaditana CCMP526]
Length = 870
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 273/529 (51%), Positives = 349/529 (65%), Gaps = 15/529 (2%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
VHE+ G G ++TSV GH+ DF +Y+NW+ VDP++LF PT K E T K +
Sbjct: 31 VHEFHGRFEGQSARIRVTSVTGHVFSTDFPGQYSNWEAVDPVDLFKAPTRK-EPTSKF-I 88
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
LA+E K + LVLWLDCD+EGENICFEV+E + Q + + RA FSAIT KDI
Sbjct: 89 THHLASEGKGADILVLWLDCDREGENICFEVIECM--QPGFKAHTRILRAHFSAITPKDI 146
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTP 216
A+ L PN EA SVDARQELDL++G AF+R+QT++FQGKYGDLDA+L+SYGPCQTP
Sbjct: 147 HRALQKLGVPNKDEALSVDARQELDLKVGVAFSRFQTRYFQGKYGDLDATLVSYGPCQTP 206
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEK 276
TLGFCV+RHD+I++F PE +W L + +G V++ W RG +FD +VF V +
Sbjct: 207 TLGFCVQRHDEIQSFSPEKFWYLAAAVAKDGANVALEWGRGRVFDHEVAHVFLHLVGEAG 266
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTET 336
V V VQ S + +TKP ALNTVEL++ AS LGMGP M +AERLY GY+SYPRTE+
Sbjct: 267 SVAVDKVQKSEQRRTKPTALNTVELLKEASKVLGMGPAQTMSVAERLYLSGYLSYPRTES 326
Query: 337 TQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQL 396
T YPE+FD+ L Q S P WGD+ + +L G+S+PR G D GDHPPITP + T+
Sbjct: 327 TAYPESFDVRGALSLQVSHPTWGDYAKGLLQEGVSRPRAGVDAGDHPPITPVRALDPTEF 386
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQ-KVAKFSVADEMFTMEAKYLLHPGFTGVMTWSA 455
GD RLYD + RHF+ +L D + Q KV S E F+ K ++ PG+ V+ S
Sbjct: 387 PGDMGRLYDLVTRHFLASLSHDARFLQTKVLFSSECGESFSASGKIMIDPGYLAVLAQS- 445
Query: 456 MKNES-IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINN 514
K+ES +PDF+ GD S+ + + T+PP YLTESELI MEKHGIGTDASI HINN
Sbjct: 446 -KDESKLPDFQEGDHFTFSSLGLGDGHTSPPGYLTESELIERMEKHGIGTDASISSHINN 504
Query: 515 ICQRNYVTVTSGRRLVPTS-------LGIVLVHGYQKIDRELVEPTMRS 556
I +RNYV V GR L+P LGIVLVHGY +ID +LV P +R+
Sbjct: 505 IVERNYVHVGDGRTLIPNPLGDCGNILGIVLVHGYLRIDADLVLPKVRA 553
>gi|71756135|ref|XP_828982.1| DNA topoisomerase III [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834368|gb|EAN79870.1| DNA topoisomerase III, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|144583730|gb|ABP01567.1| topoisomerase IIIbeta [Trypanosoma brucei brucei]
gi|261334912|emb|CBH17906.1| DNA topoisomerase III, putative [Trypanosoma brucei gambiense
DAL972]
Length = 841
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 262/524 (50%), Positives = 348/524 (66%), Gaps = 5/524 (0%)
Query: 34 ACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPK 93
A V E+ G G F++TS GHI DFT +Y +WD+ D LF P RE + +
Sbjct: 33 ALPVFEYDGYFQGAPAHFRVTSTTGHIFSCDFTPQYQSWDRTDEESLFGAPVVWREESGR 92
Query: 94 LKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITD 153
+ L +EAK C LVLWLDCD+EGENICFEVM+ V +I+ + +WRA+FSAIT
Sbjct: 93 VS--RHLEHEAKGCATLVLWLDCDREGENICFEVMQVVSR--SIHDIRCIWRAKFSAITR 148
Query: 154 KDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPC 213
+ I A NL KPN + +V RQELDL++G FTRYQTK+FQGKYG+LDAS++SYGPC
Sbjct: 149 EAITEAFVNLGKPNKNLSDAVSCRQELDLKVGVVFTRYQTKYFQGKYGNLDASVVSYGPC 208
Query: 214 QTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVE 273
QTPTL FCV+RHD+I FKPE YW L T N G ++ W+RG +FD+ + + V
Sbjct: 209 QTPTLAFCVQRHDEILNFKPENYWKLVPTCNRYGSPITFEWARGRVFDELIARLLHQRVS 268
Query: 274 KEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333
+ K VVDV ++ +P ALNTVELM++AS LG+GPHHAMQIAE LY GY+SYPR
Sbjct: 269 RSKVAKVVDVSVGADTRARPTALNTVELMKIASKFLGIGPHHAMQIAENLYISGYISYPR 328
Query: 334 TETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR 393
TE+T YP +FDL A L Q+ P WG++V+E+L ++P+ GKD GDHPPITP + AT
Sbjct: 329 TESTAYPVSFDLKAALATQQGHPVWGEYVQELLKGRYTRPKAGKDAGDHPPITPMRAATA 388
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
+L D+WRLY+YI RHFI T+ D ++ ++ E+FT K ++ PGFT ++
Sbjct: 389 GELSSDSWRLYEYITRHFIATVSPDCKLSRTKLVLELSGELFTFTGKVVVDPGFTTILAH 448
Query: 454 SAMKNESIP-DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHI 512
A+K++ +P + + G PI V++ +T P YLTE++LI LMEK+GIGTDASI H+
Sbjct: 449 LAVKDDKVPTNIEVGSDFPINDVRLQAGQTQAPGYLTEADLIGLMEKNGIGTDASISQHV 508
Query: 513 NNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
NNI +R Y V GR + PT LG+VL+HG + ID ELV P +RS
Sbjct: 509 NNIVERGYCAVKPGRVMEPTKLGVVLIHGIKSIDPELVLPLVRS 552
>gi|167525962|ref|XP_001747315.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774150|gb|EDQ87782.1| predicted protein [Monosiga brevicollis MX1]
Length = 803
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 268/530 (50%), Positives = 342/530 (64%), Gaps = 47/530 (8%)
Query: 34 ACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPK 93
+C+VHE+ G G FK TSV GH+M LDF +YNNW++ P ELF TEK++A PK
Sbjct: 37 SCTVHEYSGDFMGQQAQFKFTSVMGHVMSLDFLPQYNNWERTPPRELFDAETEKKDANPK 96
Query: 94 LKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININ-SPKTVWRARFSAIT 152
+ L +E K ++LVLWLDCD+EGENICFEVM+ V +N + +TV+RA+FSAIT
Sbjct: 97 AHVREALRSEGKGVDYLVLWLDCDREGENICFEVMDIVLPVMNRSVRGQTVFRAKFSAIT 156
Query: 153 DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGP 212
+KDIKAAM LV PN E+ +VDARQELDLR+GCAFTR+QT+FFQ
Sbjct: 157 EKDIKAAMRTLVAPNENESLAVDARQELDLRMGCAFTRFQTRFFQ--------------- 201
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAV 272
TF PE YW +DL L + + W R +FD+ VF V
Sbjct: 202 -----------------TFTPERYWTIDLQLEHDSGFLRAQWERVRVFDQELGRVFTNRV 244
Query: 273 EKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYP 332
++ VV V K K +P ALNTVELMRV S+GLGMGP +AM IAERLY QGY+SYP
Sbjct: 245 QEASSARVVSVSEKEKKKPRPNALNTVELMRVCSAGLGMGPQYAMAIAERLYMQGYISYP 304
Query: 333 RTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLAT 392
RTETT YPENFDLV+VL++Q++SP+WG V+E+L+ + +P+ GKDVGDHPPITP ++A
Sbjct: 305 RTETTAYPENFDLVSVLKEQQNSPNWGKEVKELLAGAMVQPKGGKDVGDHPPITPMRVAQ 364
Query: 393 RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
+ L GD WR+YD + RHFI TL D Y E+FT++ L PGFT VM
Sbjct: 365 ESDLGGDDWRVYDLVTRHFIATLSPDCKYLTTTIVLDAGGEVFTIQGSRTLSPGFTAVMH 424
Query: 453 W-SAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
W + + +++P G + I+S T S+LISLMEKHGIGTDASIPVH
Sbjct: 425 WVGSAEQQTVPSLPEGATLRIKSA-------------TLSDLISLMEKHGIGTDASIPVH 471
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
INNIC+RNYV + +GR LVPT+LGIV++HGY+ ID +L PTMR+A Q
Sbjct: 472 INNICERNYVQIQAGRTLVPTNLGIVMIHGYKTIDPDLCLPTMRAAVEKQ 521
>gi|294948596|ref|XP_002785799.1| DNA topoisomerase 3-beta-1, putative [Perkinsus marinus ATCC 50983]
gi|239899907|gb|EER17595.1| DNA topoisomerase 3-beta-1, putative [Perkinsus marinus ATCC 50983]
Length = 850
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 257/523 (49%), Positives = 352/523 (67%), Gaps = 11/523 (2%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
VHE+ G G K+TSV GH+ +DF + NNWD+VDP +LF T ++EA PK ++
Sbjct: 39 VHEFNGEFQGSPAWLKITSVAGHVYSIDFPPELNNWDRVDPAKLFESKTVQKEANPKQRM 98
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
P L +E+K C+ LVLWLDCD+EGENIC+EVM+ V N++ K VWRA+FS++ KD+
Sbjct: 99 PQHLRSESKGCDHLVLWLDCDREGENICYEVMQNV--APNLSDRKNVWRAKFSSLVAKDL 156
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTP 216
+ A NL PN EA SVDARQE+DL+ G AFTR+QT++FQGKYGDLD+SL+SYGPCQTP
Sbjct: 157 QHAYRNLGYPNQNEALSVDARQEIDLKTGVAFTRFQTRYFQGKYGDLDSSLVSYGPCQTP 216
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVA--VSVTWSRGHIFDKSTCNVFFKAVEK 274
TL FCV RH+ I+TF+PE Y+ +D+ L + +A + + WSRG +FD F ++
Sbjct: 217 TLWFCVRRHNDIQTFQPETYYTIDVKLEGSQLASPLWLEWSRGQLFDLQAATTFKSMIDA 276
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRT 334
+ TV DV + +++P A+NTV ++++AS LGMGP AMQ+AERLY GY++YPRT
Sbjct: 277 YQWATVTDVSEKEERRSRPGAMNTVLMLKLASQQLGMGPQQAMQVAERLYLSGYITYPRT 336
Query: 335 ETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRT 394
ETT+YP FDL + Q +P WG+ E+L+ G+++P++G D GDHPPITP + AT
Sbjct: 337 ETTKYPPAFDLREAVSFQSRNPYWGEFATELLTTGLNRPKEGYDAGDHPPITPVRSATEG 396
Query: 395 QL-DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
D+WRL+D + RHF+ +L D +T+ F + +E+ T + W
Sbjct: 397 DFGSSDSWRLFDMLTRHFLASLGHDCKFTRTKVHFVIGEEVSTSSNSH------RAGHYW 450
Query: 454 SAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
+ +P K G+ + I S + KT PP YL+ES+L+ LMEK+GIGTDAS+ HIN
Sbjct: 451 RLVTRMVLPQLKIGEKLQIASKSISSAKTKPPPYLSESDLLGLMEKNGIGTDASMATHIN 510
Query: 514 NICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
NIC+RNYV++T GRRLVPT LGI LVHGYQ ID ELV P +R+
Sbjct: 511 NICERNYVSLTDGRRLVPTKLGITLVHGYQAIDNELVIPRVRA 553
>gi|27882184|gb|AAH43953.1| MGC53016 protein, partial [Xenopus laevis]
Length = 698
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 254/405 (62%), Positives = 304/405 (75%), Gaps = 2/405 (0%)
Query: 159 AMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTL 218
AM L +PN EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+SLIS+GPCQTPTL
Sbjct: 3 AMNRLGEPNKNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSLISFGPCQTPTL 62
Query: 219 GFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCNVFFKAVEKEKH 277
GFCVERHDKI++FKPE YW+L + ++ +S+ W R +FD+ +F + K
Sbjct: 63 GFCVERHDKIQSFKPETYWVLQVKVSHGQEHPLSLDWDRVRVFDREIAQMFINITKTAKE 122
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V V K+K +PQALNTVE++RVASS LGMGP H MQIAERLYTQGY+SYPRTETT
Sbjct: 123 AQVESVSKKEKAKQRPQALNTVEMLRVASSALGMGPQHTMQIAERLYTQGYISYPRTETT 182
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLD 397
YPENFDL L+QQ ++P W D V+ +L+ GI++PRKG D GDHPPITP + AT ++L
Sbjct: 183 HYPENFDLKGTLKQQANNPFWADTVKTLLAEGINRPRKGADAGDHPPITPMRSATESELG 242
Query: 398 GDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM- 456
GDAWRLY+YI RHFI T+ D Y Q FSV EMFT K ++ PGFT +M W +
Sbjct: 243 GDAWRLYEYITRHFIATISHDCKYLQTSIAFSVGPEMFTTTCKEVISPGFTEIMPWQGIP 302
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
K ES + GD + +K+VE++T PPDYLTE+ELI+LMEKHGIGTDASIPVHINN+C
Sbjct: 303 KEESFESCQRGDKFSVDEMKLVEKQTCPPDYLTEAELITLMEKHGIGTDASIPVHINNVC 362
Query: 517 QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
QRNYVTV SGRRL PTSLGIVLVHGY KID ELV PT+RSA Q
Sbjct: 363 QRNYVTVESGRRLKPTSLGIVLVHGYYKIDAELVLPTIRSAVEKQ 407
>gi|342186003|emb|CCC95488.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 838
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 259/528 (49%), Positives = 346/528 (65%), Gaps = 5/528 (0%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R A V E+ G G F++TS GHI DFT ++ +WD+ + LF P RE
Sbjct: 29 RRTRALPVFEYDGHFHGGPAHFRVTSTTGHIFSCDFTPQHQSWDRTEEEVLFGAPVVWRE 88
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
+ ++ LA+EA+ C LVLWLDCD+EGENICFEVM+ V +I + +WRA+FS
Sbjct: 89 ESGRVS--RHLAHEAEGCATLVLWLDCDREGENICFEVMQVVER--SIRDMRNIWRAKFS 144
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
AIT + I A NL KPN + +V RQELDL++G FTRYQTK+FQGKYGDLDA+++S
Sbjct: 145 AITQEAITYAFMNLCKPNKNLSDAVSCRQELDLKVGVVFTRYQTKYFQGKYGDLDANVVS 204
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFF 269
YGPCQTPTL FCV+RHD+I FKPE YW L T N G V+ W RG +FD+ +
Sbjct: 205 YGPCQTPTLAFCVQRHDEILNFKPENYWKLVPTTNRFGAPVTFEWVRGRVFDELIARLIH 264
Query: 270 KAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV 329
+ + + + V+DV + ++ +P ALNTVELM+VAS LG+GPHHAMQ+AE LY GY+
Sbjct: 265 QRLSRLRTAKVIDVSVAPDTRARPVALNTVELMKVASKLLGIGPHHAMQLAENLYIAGYI 324
Query: 330 SYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTK 389
SYPRTE+T YP +FDL L QE P WGDHV+ +L ++P+ GKD GDHPPITP +
Sbjct: 325 SYPRTESTAYPASFDLRGALATQERHPLWGDHVQGLLKGRHTRPKAGKDAGDHPPITPMR 384
Query: 390 LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTG 449
AT + + ++W+LY+YI RHFI T+ D + + E+FT K + PGFT
Sbjct: 385 AATASDMSSESWKLYEYITRHFIATVSSDCKLARTRVVLDLGGEIFTYTGKVVEDPGFTA 444
Query: 450 VMTWSAMKNESIP-DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASI 508
V+T A+K++ +P + + G PI V++ +T PP YLTE++LI LMEK+GIGTDASI
Sbjct: 445 VLTHLAVKDDKVPTNIEVGSDFPISDVRLQAGQTQPPGYLTEADLIGLMEKNGIGTDASI 504
Query: 509 PVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
H+NN+ +R Y V GR + PT LG+VL+HG + ID ELV P +RS
Sbjct: 505 SQHVNNVVERGYCVVKPGRVMEPTKLGVVLIHGIKSIDPELVLPLVRS 552
>gi|148665015|gb|EDK97431.1| topoisomerase (DNA) III beta, isoform CRA_b [Mus musculus]
Length = 469
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 255/419 (60%), Positives = 306/419 (73%), Gaps = 4/419 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVH++ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 37 LNGACSVHKYTGTFAGQPVHFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 96
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N N KTV+RAR
Sbjct: 97 ANPKLNMVKFLQVEGRGCDYVVLWLDCDKEGENICFEVLDAVLPVMNNAHNGEKTVFRAR 156
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+SL
Sbjct: 157 FSSITDTDICNAMTRLSEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSL 216
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L ++ + ++ + W R +FD
Sbjct: 217 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKEESLLLDWDRVRVFDWEIAQ 276
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQIAERLYTQ
Sbjct: 277 MFLNMTKLEKEAWVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQIAERLYTQ 336
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+++L+ GI++PRKG D GDHPPIT
Sbjct: 337 GYISYPRTETTHYPENFDLKGSLRQQANHPYWADSVKQLLAEGINRPRKGHDAGDHPPIT 396
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHP 445
P K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E FT K ++ P
Sbjct: 397 PMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPEHFTCMGKTVISP 455
>gi|303285318|ref|XP_003061949.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456360|gb|EEH53661.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 862
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 260/541 (48%), Positives = 355/541 (65%), Gaps = 12/541 (2%)
Query: 32 NGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREAT 91
G VHE+V G FK+T+VCGH++ +DF KY +WD VDP LF P K+EA+
Sbjct: 30 RGGQDVHEFVRVYDGQRCDFKVTAVCGHVLSIDFPDKYQDWD-VDPGALFDAPVVKKEAS 88
Query: 92 PKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEA----VRHQININSPKTVWRAR 147
P ++ + L EAK LVLWLDCD+EGENIC+EV++A +R V RA+
Sbjct: 89 PGARVVSHLEQEAKGATHLVLWLDCDREGENICYEVVDACVPRMRPPPGAARDDYVKRAK 148
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FSA++ + I+ AM L PN EA +VDARQELDL++G AFTR+QT++F+GKY LDAS+
Sbjct: 149 FSAVSKESIERAMATLGTPNRHEAMAVDARQELDLKLGVAFTRFQTRYFRGKYAALDASV 208
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV--AVSVTWSRGHIFDKSTC 265
+SYGPCQTPTL F VERH I PE YW+L +T V++ W+R +FD+
Sbjct: 209 VSYGPCQTPTLNFAVERHLDIAKHVPEDYWVLCVTARSTETDEVVALRWNRERVFDRDAA 268
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTK---PQALNTVELMRVASSGLGMGPHHAMQIAER 322
+F + V + V + + T+++ K P LNTVE+++ AS+GLGMG H AMQ+AER
Sbjct: 269 ELFKRLVVDDARANGVALTAFTRTEEKRPRPSGLNTVEMLKAASAGLGMGAHAAMQVAER 328
Query: 323 LYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNG-ISKPRKGKDVGD 381
LY G++SYPRTE+T YP FDL L Q P WG+HV E+L G +++PR GKD GD
Sbjct: 329 LYISGFISYPRTESTAYPPGFDLRGTLSAQRHHPAWGEHVAELLDGGAMTRPRGGKDEGD 388
Query: 382 HPPITPTKLATRTQLDG-DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
HPPI PT+ AT ++ G DAWRLYD+I RHFI +L D Y + A F+ E F + +
Sbjct: 389 HPPIAPTRSATSERVGGGDAWRLYDFIARHFIASLSPDCAYDVQRASFACGGEGFAVVGQ 448
Query: 441 YLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKH 500
++ PG+T +M W A++ + +P+ PG + I V++ +T+PP YL+ES+LISLMEK+
Sbjct: 449 SVIEPGWTKMMPWRAIEEDPLPELTPGAKLAIAGVELTTSQTSPPPYLSESDLISLMEKN 508
Query: 501 GIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRV 560
GIGTDASIP HINN+ +R YV + +GRR+VPT LG+ L GY ID +L P+MR++
Sbjct: 509 GIGTDASIPAHINNVEKRGYVKIGAGRRVVPTDLGVTLTRGYHAIDPDLALPSMRASVEK 568
Query: 561 Q 561
Q
Sbjct: 569 Q 569
>gi|8918930|dbj|BAA97984.1| unnamed protein product [Mus musculus]
Length = 464
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 254/419 (60%), Positives = 305/419 (72%), Gaps = 4/419 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVH++ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHKYTGTFAGQPVHFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N N KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGRGCDYVVLWLDCDKEGENICFEVLDAVLPVMNNAHNGEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+SL
Sbjct: 152 FSSITDTDICNAMTRLSEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L ++ + ++ + W R +FD
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKEESLLLDWDRVRVFDWEIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQIAERLYTQ
Sbjct: 272 MFLNMTKLEKEAWVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQIAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+++L+ GI++P KG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGSLRQQANHPYWADSVKQLLAEGINRPWKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHP 445
P K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E FT K ++ P
Sbjct: 392 PMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPEHFTCMGKTVISP 450
>gi|398018216|ref|XP_003862289.1| DNA topoisomerase III, putative [Leishmania donovani]
gi|322500518|emb|CBZ35595.1| DNA topoisomerase III, putative [Leishmania donovani]
Length = 867
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 260/549 (47%), Positives = 364/549 (66%), Gaps = 16/549 (2%)
Query: 18 RPSLI-SLLTPLQRMNGACS-------VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKY 69
+PSL S+ T L NG+CS V+E+ G G FK+TS GH+ DFTS++
Sbjct: 11 KPSLAESIATILS--NGSCSRRTRALPVYEYTGNFMGSPAYFKVTSTTGHVFSCDFTSQH 68
Query: 70 NNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVME 129
NWD+ D +LF+ P ++ + K+ L +EA+ C+ LVLWLDCD+EGENICFEVM+
Sbjct: 69 QNWDRTDEEQLFTAPITWKDTSGKVS--RHLEHEAQGCDTLVLWLDCDREGENICFEVMQ 126
Query: 130 AVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFT 189
VR +I + +++RA FSAIT ++I A NL KPN + +V RQELDL++G AFT
Sbjct: 127 VVRREIY--NHHSIFRAHFSAITAEEIFHAFRNLGKPNKNISDAVTCRQELDLKVGVAFT 184
Query: 190 RYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVA 249
R+QTK+FQGKYGDLDAS+ISYGPCQTPTLGFCV+RHD+I FKPE +W L + G
Sbjct: 185 RFQTKYFQGKYGDLDASVISYGPCQTPTLGFCVQRHDEILNFKPENFWRLVPVASRGGAL 244
Query: 250 VSVTWSRGHIFDKSTCNVFFKAVEKEKHV-TVVDVQSSTKSKTKPQALNTVELMRVASSG 308
+ W RG +FD++ + + + K V TVV+V S ++ +P LNTV+LM++AS
Sbjct: 245 LQFEWDRGRLFDETMARLILQRITKSGKVATVVNVSVSNDTRPRPTGLNTVDLMKIASRA 304
Query: 309 LGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSN 368
LG+GPH+ M IAE LY +GY+SYPRTE+T YP +F+L L QQ++ WG +V +L
Sbjct: 305 LGIGPHYVMSIAENLYIRGYISYPRTESTAYPPSFNLAGALAQQKNHSMWGAYVTALLQQ 364
Query: 369 GISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKF 428
G ++P+ GKD GDHPPITP + A+ ++L GD WR+++YI RHFI ++ D +
Sbjct: 365 GHARPKAGKDAGDHPPITPMRSASPSELSGDEWRIFEYITRHFIASVSPDCRLIKTKITI 424
Query: 429 SVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP-DFKPGDLIPIQSVKMVERKTTPPDY 487
+ E+F++ K + PGFT +M + ++++ +P GD + V++ +T PP Y
Sbjct: 425 ELGGELFSISGKVVEDPGFTEIMPHARVEDDRMPTGVHKGDSFQLSDVRLQAGQTQPPSY 484
Query: 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDR 547
LTES+LI LMEK+GIGTDASI H+NNI +R Y +V +GR + P+ LGIVL+HG + ID
Sbjct: 485 LTESDLIGLMEKNGIGTDASISTHVNNIVERGYCSVQAGRVMKPSKLGIVLIHGIKAIDP 544
Query: 548 ELVEPTMRS 556
ELV P +RS
Sbjct: 545 ELVLPLVRS 553
>gi|170285121|gb|AAI61096.1| LOC100145467 protein [Xenopus (Silurana) tropicalis]
Length = 482
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 255/463 (55%), Positives = 316/463 (68%), Gaps = 18/463 (3%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVHE+ G G V FKMTSVCGH+M LDF KYNNWDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHEYTGSFMGQTVRFKMTSVCGHVMSLDFIGKYNNWDKVDPAELFSKAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++A+ +N +TV+RA+
Sbjct: 92 ANPKLSMVKFLQVEGRGCDYVVLWLDCDKEGENICFEVLDAIHPVMNRAHGGERTVYRAK 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +PN EA SVDAR +QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDTDILNAMNRLGEPNKNEALSVDAR-------------FQTKYFQGKYGNLDSSL 198
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L + ++ + + W R +FD+
Sbjct: 199 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQVKVSRGQENPLILDWDRVRVFDREIAQ 258
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + K V V K+K +PQALNTVE++RVASS LGMGP H MQIAERLYTQ
Sbjct: 259 MFINITKTAKEAQVESVSKKEKAKQRPQALNTVEMLRVASSALGMGPQHTMQIAERLYTQ 318
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ ++P W D V+ +L+ GI++PRKG D GDHPPIT
Sbjct: 319 GYISYPRTETTHYPENFDLKGTLRQQANNPFWADMVKTLLAEGINRPRKGTDAGDHPPIT 378
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + AT +L GDAWRLY+YI RHFI T+ D Y Q FSV E FT K ++ PG
Sbjct: 379 PMRSATEAELGGDAWRLYEYITRHFIATISHDCKYLQTSIAFSVGPEKFTTTCKEVISPG 438
Query: 447 FTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYL 488
FT +M W + K ES + GD + +K++E+ P L
Sbjct: 439 FTEIMPWQGIPKEESFQPCERGDKFSVDEMKLMEKTDMPSRLL 481
>gi|157871822|ref|XP_001684460.1| putative DNA topoisomerase III [Leishmania major strain Friedlin]
gi|68127529|emb|CAJ05541.1| putative DNA topoisomerase III [Leishmania major strain Friedlin]
Length = 866
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 261/549 (47%), Positives = 362/549 (65%), Gaps = 16/549 (2%)
Query: 18 RPSLI-SLLTPLQRMNGACS-------VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKY 69
+PSL S+ T L NG+CS V+E+ G G FK+TS GH+ DFTS++
Sbjct: 11 KPSLAESIATILS--NGSCSRRTRALPVYEYPGNFMGSPAYFKVTSTTGHVFSCDFTSQH 68
Query: 70 NNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVME 129
NWD+ D +LF+ P ++ + K+ L +EA+ C+ LVLWLDCD+EGENICFEVM+
Sbjct: 69 QNWDRTDEEQLFTAPITWKDTSGKVT--HHLEHEAQGCDTLVLWLDCDREGENICFEVMQ 126
Query: 130 AVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFT 189
VR +I S ++RA FSAIT ++I A NL KPN + +V RQELDL++G AFT
Sbjct: 127 VVRREIY--SHHNIFRAHFSAITAEEIFQAFRNLGKPNKNISDAVTCRQELDLKVGVAFT 184
Query: 190 RYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVA 249
R+QTK+FQGKYGDLDAS+ISYGPCQTPTLGFCV+RHD+I FKPE +W L + G
Sbjct: 185 RFQTKYFQGKYGDLDASVISYGPCQTPTLGFCVQRHDEILNFKPENFWRLVPVASRGGAL 244
Query: 250 VSVTWSRGHIFDKSTCNVFFKAVEKEKHV-TVVDVQSSTKSKTKPQALNTVELMRVASSG 308
+ W RG +FD++ + + + K V TVV+V S ++ +P LNTV+LM++AS
Sbjct: 245 LQFEWDRGRLFDETMARLILQRITKNGKVATVVNVSVSNDTRPRPTGLNTVDLMKIASRA 304
Query: 309 LGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSN 368
LG+GPH+ M IAE LY +GY+SYPRTE+T YP +F+L L QQ++ WG +V +L
Sbjct: 305 LGIGPHYVMSIAENLYIRGYISYPRTESTAYPSSFNLAGTLAQQKNHSMWGAYVTTLLQQ 364
Query: 369 GISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKF 428
G ++P+ GKD GDHPPITP + A+ +L GD WR+++YI RHFI ++ D +
Sbjct: 365 GHARPKAGKDAGDHPPITPMRSASPGELSGDEWRIFEYITRHFIASVSPDCRLIKTKITI 424
Query: 429 SVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP-DFKPGDLIPIQSVKMVERKTTPPDY 487
+ E+F++ K + PGFT +M + ++++ +P GD + V++ +T PP Y
Sbjct: 425 ELGGELFSISGKVVEDPGFTEIMPHARVEDDRMPTGVHKGDSFQLSDVRLQAGQTQPPSY 484
Query: 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDR 547
LTES+LI LMEK+GIGTDASI H+NNI +R Y +V +GR + P+ LGIVL+HG + ID
Sbjct: 485 LTESDLIGLMEKNGIGTDASISTHVNNIVERGYCSVQAGRVMKPSKLGIVLIHGIKAIDP 544
Query: 548 ELVEPTMRS 556
ELV P +RS
Sbjct: 545 ELVLPLVRS 553
>gi|255073139|ref|XP_002500244.1| predicted protein [Micromonas sp. RCC299]
gi|226515506|gb|ACO61502.1| predicted protein [Micromonas sp. RCC299]
Length = 861
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 257/535 (48%), Positives = 355/535 (66%), Gaps = 7/535 (1%)
Query: 33 GACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP 92
G VHE+ G FK+T+V GH++ +DF +K+ +WD +DP LF P +K+EATP
Sbjct: 34 GGQEVHEFERDFNGARCHFKVTAVIGHVLSIDFPAKFQSWD-LDPAILFDAPVQKKEATP 92
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAI 151
K ++ L EAK L+LWLDCD+EGENICFEV++A + N T V RA+FSA+
Sbjct: 93 KARVVEHLEREAKGASHLILWLDCDREGENICFEVIDACAPVMRPNRGDTFVHRAKFSAV 152
Query: 152 TDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYG 211
+ + I+ AM L PN EA +VDARQELDL++G AFTR+QT+FFQG+Y LDAS+ISYG
Sbjct: 153 SKESIERAMRTLGAPNRAEALAVDARQELDLKVGVAFTRFQTRFFQGRYSHLDASVISYG 212
Query: 212 PCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN--GVAVSVTWSRGHIFDKSTCNVFF 269
PCQTPTL F V+RH +I + PE +W L + + G + W R +FD +F
Sbjct: 213 PCQTPTLNFAVQRHLEIVSHTPEDFWSLHVEVRSTSLGKTLVTRWERERVFDGDVGEMFR 272
Query: 270 KAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV 329
V ++H V V+ + + K +P LNTV+L++ AS+G+GMG H AMQ+AERLY QG++
Sbjct: 273 SMVAGDRHALVESVEETEEFKRRPPGLNTVDLLKAASAGMGMGAHRAMQVAERLYIQGFI 332
Query: 330 SYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTK 389
SYPRTE+T YP FDL L+ Q PDWG+ V E+L+ ++KPR GKD GDHPPITP +
Sbjct: 333 SYPRTESTAYPPGFDLKGTLKAQRGHPDWGEWVEELLAGSMTKPRGGKDEGDHPPITPVR 392
Query: 390 LATRTQL-DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
AT + + G+AWRLYD++ RHFI ++ D Y + A E F + + ++ PG+T
Sbjct: 393 SATESAVGGGEAWRLYDFVARHFIASVSPDCAYVSRRATLVAGGERFRVSGQTVIAPGWT 452
Query: 449 GVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASI 508
VM A++++ + + + G+ +PI +V++ + T+PP YL+E+ELI LME++GIGTDASI
Sbjct: 453 TVMPHRAVEDDPLGEIERGESLPIATVELRQGATSPPPYLSEAELIGLMERNGIGTDASI 512
Query: 509 PVHINNICQRNYVTVTS--GRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
P HINNI R YVT+ S GRR+VPT LG+ LV GY +ID EL P +RS Q
Sbjct: 513 PTHINNIESRKYVTIQSQGGRRVVPTDLGVTLVQGYHRIDPELALPAVRSHVEKQ 567
>gi|146092141|ref|XP_001470217.1| putative DNA topoisomerase III [Leishmania infantum JPCM5]
gi|134085011|emb|CAM69411.1| putative DNA topoisomerase III [Leishmania infantum JPCM5]
Length = 867
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 259/549 (47%), Positives = 364/549 (66%), Gaps = 16/549 (2%)
Query: 18 RPSLI-SLLTPLQRMNGACS-------VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKY 69
+PSL S+ T L NG+CS V+E+ G G FK+TS GH+ DFTS++
Sbjct: 11 KPSLAESIATILS--NGSCSRRTRALPVYEYTGNFMGSPAYFKVTSTTGHVFSCDFTSQH 68
Query: 70 NNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVME 129
NWD+ D +LF+ P ++ + K+ L +E++ C+ LVLWLDCD+EGENICFEVM+
Sbjct: 69 QNWDRTDEEQLFTAPITWKDTSGKVS--HHLEHESQGCDTLVLWLDCDREGENICFEVMQ 126
Query: 130 AVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFT 189
VR +I + +++RA FSAIT ++I A NL KPN + +V RQELDL++G AFT
Sbjct: 127 VVRREIY--NHHSIFRAHFSAITAEEIFHAFRNLGKPNKNISDAVTCRQELDLKVGVAFT 184
Query: 190 RYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVA 249
R+QTK+FQGKYGDLDAS+ISYGPCQTPTLGFCV+RHD+I FKPE +W L + G
Sbjct: 185 RFQTKYFQGKYGDLDASVISYGPCQTPTLGFCVQRHDEILNFKPENFWRLVPVASRGGAL 244
Query: 250 VSVTWSRGHIFDKSTCNVFFKAVEKEKHV-TVVDVQSSTKSKTKPQALNTVELMRVASSG 308
+ W RG +FD++ + + + K V TVV+V S ++ +P LNTV+LM++AS
Sbjct: 245 LQFEWDRGRLFDETMARLILQRITKSGKVATVVNVSVSNDTRPRPTGLNTVDLMKIASRA 304
Query: 309 LGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSN 368
LG+GPH+ M IAE LY +GY+SYPRTE+T YP +F+L L QQ++ WG +V +L
Sbjct: 305 LGIGPHYVMSIAENLYIRGYISYPRTESTAYPPSFNLAGALAQQKNHSMWGAYVTALLQQ 364
Query: 369 GISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKF 428
G ++P+ GKD GDHPPITP + A+ ++L GD WR+++YI RHFI ++ D +
Sbjct: 365 GHARPKAGKDAGDHPPITPMRSASPSELSGDEWRIFEYITRHFIASVSPDCRLIKTKITI 424
Query: 429 SVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP-DFKPGDLIPIQSVKMVERKTTPPDY 487
+ E+F++ K + PGFT +M + ++++ +P GD + V++ +T PP Y
Sbjct: 425 ELGGELFSISGKVVEDPGFTEIMPHARVEDDRMPTGVHKGDSFQLSDVRLQAGQTQPPSY 484
Query: 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDR 547
LTES+LI LMEK+GIGTDASI H+NNI +R Y +V +GR + P+ LGIVL+HG + ID
Sbjct: 485 LTESDLIGLMEKNGIGTDASISTHVNNIVERGYCSVQAGRVMKPSKLGIVLIHGIKAIDP 544
Query: 548 ELVEPTMRS 556
ELV P +RS
Sbjct: 545 ELVLPLVRS 553
>gi|389601917|ref|XP_001566225.2| putative DNA topoisomerase III [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505240|emb|CAM39725.2| putative DNA topoisomerase III [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 866
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 258/549 (46%), Positives = 366/549 (66%), Gaps = 16/549 (2%)
Query: 18 RPSLI-SLLTPLQRMNGACS-------VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKY 69
+PSL S+ T L +G+CS V+E++G G FK+TS GH+ DFTS++
Sbjct: 11 KPSLAESIATILS--SGSCSRRTRALPVYEYMGSFMGSPAYFKVTSTTGHVFSCDFTSQH 68
Query: 70 NNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVME 129
NWD+ + +LF+ P ++ + K+ L +EAK C+ LVLWLDCD+EGENICFEVM+
Sbjct: 69 QNWDRTEEEQLFTAPIVWKDTSEKVT--HHLEHEAKGCDTLVLWLDCDREGENICFEVMQ 126
Query: 130 AVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFT 189
VR +I N+ +++RA FSAIT ++I A +L +PN + +V RQELDL++G AFT
Sbjct: 127 VVRREIYNNN--SIFRAHFSAITAEEIFHAFCSLGRPNKSISDAVTCRQELDLKVGVAFT 184
Query: 190 RYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVA 249
R+QTK+FQGKYGDLDAS++SYGPCQTPTLGFCV+RHD+I FKPE +W L + +G
Sbjct: 185 RFQTKYFQGKYGDLDASVVSYGPCQTPTLGFCVQRHDEILNFKPENFWRLVPVASRSGAV 244
Query: 250 VSVTWSRGHIFDKSTCNVFFKAVEKEKHV-TVVDVQSSTKSKTKPQALNTVELMRVASSG 308
+ W RG +FD++ + + + K V TV ++ S+ ++ +P LNTV+LM++AS
Sbjct: 245 LQFDWDRGRVFDETMARLILQRITKNGKVATVTNMSVSSDTRPRPTGLNTVDLMKIASKA 304
Query: 309 LGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSN 368
LG+GPH+ M IAE LY +GY+SYPRTE+T YP +F+LV L QQ++ P WG +V +L
Sbjct: 305 LGIGPHYVMTIAENLYIRGYISYPRTESTAYPPSFNLVGALAQQKNHPIWGGYVTALLQG 364
Query: 369 GISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKF 428
G P+ GKD GDHPPITP + A+ +L GD WR+++YI RHFI ++ D +
Sbjct: 365 GHVHPKAGKDAGDHPPITPMRSASPGELSGDEWRIFEYITRHFIASVSPDCRLIKTKITI 424
Query: 429 SVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP-DFKPGDLIPIQSVKMVERKTTPPDY 487
+ E+F++ K + PGFT +M + ++++ +P GD + V++ +T PP Y
Sbjct: 425 ELGGELFSISGKVVEDPGFTEIMPHARVEDDRMPTGVNKGDSFQLSDVRLQAGQTQPPSY 484
Query: 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDR 547
LTES+LI LMEK+GIGTDASI HINNI +R Y +V +GR + P+ LGIVL+HG + ID
Sbjct: 485 LTESDLIGLMEKNGIGTDASISTHINNIVERGYCSVQAGRVMKPSKLGIVLIHGIKAIDP 544
Query: 548 ELVEPTMRS 556
ELV P +RS
Sbjct: 545 ELVLPLVRS 553
>gi|401425068|ref|XP_003877019.1| putative DNA topoisomerase III [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493263|emb|CBZ28548.1| putative DNA topoisomerase III [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 866
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 261/550 (47%), Positives = 362/550 (65%), Gaps = 18/550 (3%)
Query: 18 RPSLI-SLLTPLQRMNGACS-------VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKY 69
+PSL S+ T L NG+CS V+E++G G FK+TS GH+ DFTS++
Sbjct: 11 KPSLAESIATILS--NGSCSRRTRALPVYEYMGNFMGSPAYFKVTSTTGHVFSCDFTSQH 68
Query: 70 NNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVME 129
NWD+ D +LF+ P ++ + K+ L +EA+ C+ LVLWLDCD+EGENICFEVM+
Sbjct: 69 QNWDRTDEEQLFTAPITWKDTSGKVT--HHLEHEAQGCDTLVLWLDCDREGENICFEVMQ 126
Query: 130 AVRHQI-NINSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAF 188
VR +I N N+ ++RA FSAIT ++I A NL KPN + +V RQELDL++G AF
Sbjct: 127 VVRREIYNHNN---IFRAHFSAITAEEIFHAFRNLGKPNKNVSDAVTCRQELDLKVGVAF 183
Query: 189 TRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV 248
TR+QTK+FQGKYGDLDAS+ISYGPCQTPTLGFCV+RHD+I FKPE +W L G
Sbjct: 184 TRFQTKYFQGKYGDLDASVISYGPCQTPTLGFCVQRHDEILNFKPENFWRLVPVATRGGA 243
Query: 249 AVSVTWSRGHIFDKSTCNVFFKAVEKEKHV-TVVDVQSSTKSKTKPQALNTVELMRVASS 307
+ W RG +FD++ + + + K V TV +V S ++ +P LNTV+LM++AS
Sbjct: 244 LLQFEWDRGRLFDETMARLILQRITKNGKVATVANVSVSNDTRPRPTGLNTVDLMKIASR 303
Query: 308 GLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLS 367
LG+GPH+ M IAE LY +GY+SYPRTE+T YP +F+L L QQ++ WG +V +L
Sbjct: 304 ALGIGPHYVMSIAENLYIRGYISYPRTESTAYPPSFNLAGTLAQQKNHSMWGAYVTALLQ 363
Query: 368 NGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAK 427
G ++P+ GKD GDHPPITP + A+ +L GD WR+++YI RHFI ++ D +
Sbjct: 364 QGHARPKAGKDAGDHPPITPMRSASPGELSGDEWRIFEYITRHFIASVSPDCRLIKTKIT 423
Query: 428 FSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP-DFKPGDLIPIQSVKMVERKTTPPD 486
+ E F++ K + PGFT +M + ++++ +P GD + V++ +T PP
Sbjct: 424 IELGGEFFSISGKVVEDPGFTEIMPHARVEDDRMPTGINKGDSFQLSDVRLQAGQTQPPS 483
Query: 487 YLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKID 546
YLTES+LI LMEK+GIGTDASI H+NNI +R Y +V +GR + P+ LGIVL+HG + ID
Sbjct: 484 YLTESDLIGLMEKNGIGTDASISTHVNNIVERGYCSVQAGRVMKPSKLGIVLIHGIKAID 543
Query: 547 RELVEPTMRS 556
ELV P +RS
Sbjct: 544 PELVLPLVRS 553
>gi|358334208|dbj|GAA52642.1| DNA topoisomerase III [Clonorchis sinensis]
Length = 887
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 253/464 (54%), Positives = 336/464 (72%), Gaps = 7/464 (1%)
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWN 162
+AK+ + L+LWLDCDKEGENICFEV++ V + + I+ PK ++RA FSAITD+++ A+ N
Sbjct: 2 QAKNSDTLILWLDCDKEGENICFEVIDCV-YSVMIH-PKRIFRAHFSAITDEELSNALRN 59
Query: 163 LVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
L +PN E+ SVDARQELDLRIGCAFTR+QTKFFQGKYG+L+++L+S+GPCQTPTLGFCV
Sbjct: 60 LRQPNKNESLSVDARQELDLRIGCAFTRFQTKFFQGKYGNLNSNLVSFGPCQTPTLGFCV 119
Query: 223 ERHDKIRTFKPEPYWLLDLTLNLNGVA-VSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV 281
+RHD+I++FKPE +W + +L++ G A + + W+R +FDK VF V+ V+
Sbjct: 120 KRHDRIQSFKPESFWRIKASLSVKGGATMDLVWTRDRLFDKEAAMVFLTKVKSCCTAEVM 179
Query: 282 DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPE 341
V + K K +PQ LNTVE++RVAS+ LG+GPH AM +AERLYT GY++YPRTETT YP
Sbjct: 180 QVTTKEKVKPRPQGLNTVEMLRVASACLGIGPHAAMAVAERLYTSGYINYPRTETTTYPS 239
Query: 342 NFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAW 401
FDL +++QQ P WGD R++L++G++ PRKG D GDHPPI P ++AT +L DA
Sbjct: 240 TFDLRGLVQQQAKHPQWGDVARDLLASGLTPPRKGHDAGDHPPIAPMRMATPGELGHDAA 299
Query: 402 RLYDYIVRHFIGTLCGDLVYTQKVAKFSVAD-EMFTMEAKYLLHPGFTGVMTWSAMKNES 460
RLY++I +HF+ T+ D Y S+ D E+FT+ +L PGFT ++T A+ +++
Sbjct: 300 RLYEFIAQHFLATVMPDCRYESTQVTLSIGDGELFTLTGIRVLEPGFTRILTRQALTDQT 359
Query: 461 IPD--FKPGDLIPIQSV-KMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQ 517
+PD G IP+ +VE +T PPDYLTE+ELI+ ME+HGIGTDASIP HI NI Q
Sbjct: 360 LPDEILVRGAKIPLAGEPTLVEGQTGPPDYLTEAELITAMERHGIGTDASIPTHIENIVQ 419
Query: 518 RNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
R YV + GRRL PT LGIVLVHGYQ ID ELV P MR A Q
Sbjct: 420 RAYVQLLPGRRLQPTPLGIVLVHGYQAIDPELVLPHMRRAVEEQ 463
>gi|260101066|gb|ACX31684.1| DNA topoisomerase III beta [Leishmania donovani]
Length = 866
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 260/549 (47%), Positives = 361/549 (65%), Gaps = 16/549 (2%)
Query: 18 RPSLI-SLLTPLQRMNGACS-------VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKY 69
+PSL S+ T L NG+CS V+E+ G G FK+TS GH+ DFTS++
Sbjct: 11 KPSLAESIATILS--NGSCSRRTRALPVYEYTGNFMGSPAYFKVTSTTGHVFSCDFTSQH 68
Query: 70 NNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVME 129
NWD+ D +LF+ P ++ + K+ L +EA+ C+ LVLWLDCD+EGENICFEVM+
Sbjct: 69 QNWDRTDEEQLFTAPITWKDTSGKVT--HHLEHEAQGCDTLVLWLDCDREGENICFEVMQ 126
Query: 130 AVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFT 189
VR +I + ++RA FSAIT ++I A NL KPN + +V RQELDL++G AFT
Sbjct: 127 VVRREIY--NHHNIFRAHFSAITAEEIFQAFRNLGKPNKNISDAVTCRQELDLKVGVAFT 184
Query: 190 RYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVA 249
R+QTK+FQGKYGDLDAS+ISYGPCQTPTLGFCV+RHD+I FKPE +W L + G
Sbjct: 185 RFQTKYFQGKYGDLDASVISYGPCQTPTLGFCVQRHDEILNFKPENFWRLVPVASRGGAL 244
Query: 250 VSVTWSRGHIFDKSTCNVFFKAVEKEKHV-TVVDVQSSTKSKTKPQALNTVELMRVASSG 308
+ W RG +FD++ + + + K V TVV+V S ++ +P LNTV+LM++AS
Sbjct: 245 LQFEWDRGRLFDETMARLILQRITKNGKVATVVNVSVSNDTRPRPTGLNTVDLMKIASRA 304
Query: 309 LGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSN 368
LG+GPH+ M IAE LY +GY+SYPRTE+T YP +F+L L QQ++ WG +V +L
Sbjct: 305 LGIGPHYVMSIAENLYIRGYISYPRTESTAYPPSFNLAGTLAQQKNHSMWGAYVTALLQQ 364
Query: 369 GISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKF 428
G ++P+ GKD GDHPPITP + A+ +L GD WR+++YI RHFI ++ D +
Sbjct: 365 GHARPKAGKDAGDHPPITPMRSASPGELSGDEWRIFEYITRHFIASVSPDCRLIKTKITI 424
Query: 429 SVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP-DFKPGDLIPIQSVKMVERKTTPPDY 487
+ E+F + K + PGFT +M + ++++ +P GD + V++ +T PP Y
Sbjct: 425 ELGGELFGISGKVVEDPGFTEIMPHARVEDDRMPTGVHKGDSFQLSDVRLQAGQTQPPSY 484
Query: 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDR 547
LTES+LI LMEK+GIGTDASI H+NNI +R Y +V +GR + P+ LGIVL+HG + ID
Sbjct: 485 LTESDLIGLMEKNGIGTDASISTHVNNIVERGYCSVQAGRVMKPSKLGIVLIHGIKAIDP 544
Query: 548 ELVEPTMRS 556
ELV P +RS
Sbjct: 545 ELVLPLVRS 553
>gi|428178584|gb|EKX47459.1| hypothetical protein GUITHDRAFT_69656 [Guillardia theta CCMP2712]
Length = 807
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 267/546 (48%), Positives = 345/546 (63%), Gaps = 19/546 (3%)
Query: 33 GACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP 92
G VH + G LFK+TSV GH+ DF S Y +WDKVDP+ LF P EK+
Sbjct: 31 GTPPVHTFRSNFMGSSALFKVTSVVGHVFSTDFPSAYQSWDKVDPVTLFDAPVEKKAE-- 88
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAV------RHQININSPKT-VWR 145
K + L NE K ++LVLWLDCD+EGENICFEV+ + R ++ PK ++R
Sbjct: 89 KKGVVHLLQNEGKGADYLVLWLDCDREGENICFEVISCIMPEALSRKELRTPGPKQRIFR 148
Query: 146 ARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDA 205
A+FSAI DIK AM L PN E+ SV+ARQELDL++G AF+RYQT++FQGKY DLD+
Sbjct: 149 AKFSAINPNDIKNAMMTLGAPNENESLSVEARQELDLKVGVAFSRYQTRYFQGKYSDLDS 208
Query: 206 SLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKST 264
++SYGPCQTPTLGFCVERH I+ F PEPYW+L T+ + G AV W RG IFDK
Sbjct: 209 RIVSYGPCQTPTLGFCVERHILIQNFVPEPYWVLCPTIKIEGYGAVKFEWERGRIFDKRV 268
Query: 265 CNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY 324
+VF + ++ + ++ V K +P LNTV +++ S LG+GP AM AE LY
Sbjct: 269 ASVFRSIMLEDSRLKILRVNQKEVKKGRPTPLNTVAMLKACSKALGIGPASAMHTAENLY 328
Query: 325 TQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPP 384
QGY+SYPRTE+T YP++ ++ LRQ WG V ++L P+ G DVGDHPP
Sbjct: 329 LQGYISYPRTESTAYPKSMNIEETLRQFSRHAIWGGFVDDLLPRNWVTPKSGVDVGDHPP 388
Query: 385 ITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLH 444
ITP +LA L D R+YD I +HFI T+ D VY Q + + E FT + L
Sbjct: 389 ITPCRLAQPGDLSSDQGRVYDLIAKHFIATVSPDAVYLQTKIEAQIGTENFTTSGRQLKR 448
Query: 445 PGFTGVMTW-SAMKNE------SIPDFKPGDLIPI--QSVKMVERKTTPPDYLTESELIS 495
PG+ G+ S ++E ++P FK G+ + +++ MVE+KT+PP YLTESELI+
Sbjct: 449 PGWLGLYQMRSEYEDEENYEIRNLPSFKGGETFQMTSETLPMVEKKTSPPGYLTESELIA 508
Query: 496 LMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMR 555
LMEK+GIGTDAS+ HI NICQRNYV V SGRRLVPT LG VLV GY +ID +LV P +R
Sbjct: 509 LMEKNGIGTDASMATHIENICQRNYVNVESGRRLVPTQLGTVLVQGYYRIDADLVLPIVR 568
Query: 556 SAYRVQ 561
S Q
Sbjct: 569 SNIEKQ 574
>gi|384490193|gb|EIE81415.1| hypothetical protein RO3G_06120 [Rhizopus delemar RA 99-880]
Length = 761
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 259/541 (47%), Positives = 341/541 (63%), Gaps = 59/541 (10%)
Query: 9 VPASEIKLARPSLISLLTPLQRM---NGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDF 65
P +E SL LL P + VHEW G F+ TSV GH+ GLDF
Sbjct: 12 APVAEKPSLAESLSKLLAPKGQFITHKRTTPVHEWTGQFRDQSAEFQFTSVTGHVYGLDF 71
Query: 66 TSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICF 125
T ++N+WD +DPL+LF T K E+ PK+K+ L N AK ++LVLWLDCD+EGENICF
Sbjct: 72 TKEHNSWD-IDPLQLFDAKTIKLESNPKMKMTYHLQNMAKGIDYLVLWLDCDREGENICF 130
Query: 126 EV----MEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELD 181
EV ++ ++ N V RA+FSA VDARQELD
Sbjct: 131 EVIDNCLQYMKQPSTGNKMSHVLRAKFSA-----------------------VDARQELD 167
Query: 182 LRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDL 241
L++G AFTR+QT+FFQGKYG+LD+++ISYGPCQTPTL FCVERHD+I+ F+PE +W + +
Sbjct: 168 LKVGVAFTRFQTRFFQGKYGNLDSTVISYGPCQTPTLSFCVERHDRIQGFQPESFWSIKV 227
Query: 242 TLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVEL 301
T+ + + ++TW+R +FD+ ++FFK E+ K
Sbjct: 228 TVKNSDTSTNLTWNRERVFDRQVGHLFFKMTEEAKG------------------------ 263
Query: 302 MRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDH 361
+ LG+ P AM IAERLYTQGY+SYPRTET++YPE FD+ +VL QQ + P WG +
Sbjct: 264 ---NGASLGISPSEAMSIAERLYTQGYISYPRTETSKYPETFDINSVLVQQANHPHWGHY 320
Query: 362 VREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVY 421
++L NG +P G DVGDHPPITPT++A + L GD WR+YD++ R+FIG++ L Y
Sbjct: 321 CDDLLKNGYDRPSGGVDVGDHPPITPTRVALESDLHGDTWRVYDFVARNFIGSISAGLKY 380
Query: 422 TQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERK 481
T F + E F+ + + GF VM W +E IP+FK GD++ I+SV + E K
Sbjct: 381 TTTTVNFLIGKEEFSCKGSSVTSLGFASVMHWMGRADEHIPEFKKGDVLHIESVSITEGK 440
Query: 482 TTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT-SGRRLVPTSLGIVLVH 540
T+PPDYLTE+ELI LME HGIGTDASIPVHINNICQRNYV V+ S R+LVPT+LGIVL+H
Sbjct: 441 TSPPDYLTEAELIGLMEHHGIGTDASIPVHINNICQRNYVQVSGSSRKLVPTNLGIVLIH 500
Query: 541 G 541
G
Sbjct: 501 G 501
>gi|126649305|ref|XP_001388324.1| DNA topoisomerase III beta-1 [Cryptosporidium parvum Iowa II]
gi|32398820|emb|CAD98530.1| DNA topoisomerase III beta-1, probable [Cryptosporidium parvum]
gi|126117418|gb|EAZ51518.1| DNA topoisomerase III beta-1, putative [Cryptosporidium parvum Iowa
II]
Length = 835
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/536 (44%), Positives = 352/536 (65%), Gaps = 9/536 (1%)
Query: 28 LQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEK 87
L G VHE+ G G V F++TSV GH+ +DF Y+NW+K DP+ LF P K
Sbjct: 28 LDTRRGKTPVHEFNGTFMGMNVQFRVTSVAGHVFEIDFPQSYSNWEKTDPVSLFDAPIIK 87
Query: 88 REATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVW--R 145
E++ K+ + L E+K C +LVLWLDCD+EGENICFEV+ V + ++ + W R
Sbjct: 88 NESSSKM--VSHLEKESKGCSYLVLWLDCDREGENICFEVINVVSNNMSKGRDQRDWIFR 145
Query: 146 ARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLD- 204
A+FS+I+ DI AM NL PN E+ +VD RQELDL+IG AF+R QTK+ + K+GD +
Sbjct: 146 AKFSSISPGDIFFAMKNLTFPNKNESDAVDVRQELDLKIGVAFSRLQTKYLKSKFGDFNK 205
Query: 205 ASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKST 264
+S+ISYGPCQTPTL F V+R D I +F PE Y+ + TL+ + +++ WSR +F+
Sbjct: 206 SSIISYGPCQTPTLFFTVQRRDSINSFIPEKYYTISATLSKDSQDINLIWSRSRVFELQV 265
Query: 265 CNVFFKAVEKEKHVT--VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAER 322
N F + ++ +K ++ VVD+ S + +P LNTV +++++S+ LG+GP + IAE+
Sbjct: 266 ANCFLQLIQNKKPLSARVVDITSKNSRRIRPLPLNTVSMLKLSSTILGIGPFQTLNIAEK 325
Query: 323 LYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRK-GKDVGD 381
LY G+ +YPRTET++YP+NFD+ + + +++ WG + ++L G + PRK G D+GD
Sbjct: 326 LYLSGFTTYPRTETSRYPKNFDIKSTIAMFKNNSVWGSYSSDLLQKGFNLPRKDGLDLGD 385
Query: 382 HPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKY 441
HPPITP + AT+ LDGD+WRLYD I RHF T+ D+ + KF + E+F +
Sbjct: 386 HPPITPVRSATQNDLDGDSWRLYDLITRHFFATISNDIKMINRTIKFDLNGEIFIISGNQ 445
Query: 442 LLHPGFTGVMTWSAMKNESI-PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKH 500
++ GF+ + +A +I PDF +++PI++++++ ++T PP L+ES+L+SLMEKH
Sbjct: 446 VIDHGFSVIQGRAACHESNIIPDFTLNEVVPIKNIEILSKETKPPPILSESDLLSLMEKH 505
Query: 501 GIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
GIGTDAS+P HI I +R YV + SGRRL PT LGI LVHG ID ELV P +RS
Sbjct: 506 GIGTDASMPTHIQKIQEREYVKLASGRRLEPTKLGIALVHGIMNIDHELVLPKIRS 561
>gi|294889461|ref|XP_002772824.1| DNA topoisomerase 3-beta-1, putative [Perkinsus marinus ATCC 50983]
gi|239877374|gb|EER04640.1| DNA topoisomerase 3-beta-1, putative [Perkinsus marinus ATCC 50983]
Length = 813
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 236/490 (48%), Positives = 332/490 (67%), Gaps = 5/490 (1%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
VHE+ G G K+TSV GH+ +DF + NNWD+VDP +LF T ++EA PK ++
Sbjct: 39 VHEFNGEFQGSPAWLKITSVAGHVYSIDFPPELNNWDRVDPAKLFESKTVQKEANPKQRM 98
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
P L +E+K C+ LVLWLDCD+EGENIC+EVM+ V N++ K VWRA+FS++ KD+
Sbjct: 99 PQHLRSESKGCDHLVLWLDCDREGENICYEVMQNVVP--NLSDRKNVWRAKFSSLVAKDL 156
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTP 216
+ A NL PN EA SVDARQE+DL+ G AFTR+QT++FQGKYGDLD+SL+SYGPCQTP
Sbjct: 157 QHAYRNLGYPNQNEALSVDARQEIDLKTGVAFTRFQTRYFQGKYGDLDSSLVSYGPCQTP 216
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVA--VSVTWSRGHIFDKSTCNVFFKAVEK 274
TL FCV RH+ I+TF+PE Y+ +D+ L + +A + + WSRG +FD F ++
Sbjct: 217 TLWFCVRRHNDIQTFQPETYYTIDVKLEGSQLASPLWLEWSRGQLFDLQAATTFKSMIDA 276
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRT 334
+ TV DV + +++P A+NTV ++++AS LGMGP AMQ+AERLY GY++YPRT
Sbjct: 277 YQWATVTDVSEKEERRSRPGAMNTVLMLKLASQQLGMGPQQAMQVAERLYLSGYITYPRT 336
Query: 335 ETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRT 394
ETT+YP FDL + Q +P WG+ E+L+ G+++P++G D GDHPPITP + AT
Sbjct: 337 ETTKYPPAFDLREAVSFQSRNPYWGEFATELLTTGLNRPKEGYDAGDHPPITPVRSATEG 396
Query: 395 QL-DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
D+WRL+D + RHF+ +L D +T+ F + DE F++ + + PGFT V
Sbjct: 397 DFGSSDSWRLFDMLTRHFLASLGHDCKFTRTKVHFVIGDEKFSVGGRRMKSPGFTRVQYT 456
Query: 454 SAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
M++ +P K G+ + I S + KT PP YL+ES+L+ LMEK+GIGTDAS+ HIN
Sbjct: 457 GEMQDIYVPPLKIGEKLQIASKSISSAKTKPPPYLSESDLLGLMEKNGIGTDASMATHIN 516
Query: 514 NICQRNYVTV 523
NIC+ + +T+
Sbjct: 517 NICEPHALTI 526
>gi|145347645|ref|XP_001418273.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578502|gb|ABO96566.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 863
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/516 (46%), Positives = 336/516 (65%), Gaps = 14/516 (2%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
+++TS GH+ ++F+++Y W+ +P ELF+ KR ++ L EA+ C++L
Sbjct: 67 WRVTSTTGHVASVEFSARYQAWEGCEPGELFAADVVKRA---DGRMVGHLEREARGCDYL 123
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPK------TVWRARFSAITDKDIKAAMWNLV 164
VL+LDCD+EGENICFEVMEA + + + + RA+FSA+T + I+ AM L
Sbjct: 124 VLFLDCDREGENICFEVMEACAGGLKTGATEPGAPSARILRAKFSAVTRESIERAMRTLG 183
Query: 165 KPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVER 224
+PN EA +VDARQELDL++G AFTR+QT++F KY LDA ++SYGPCQTPTLGF V+R
Sbjct: 184 EPNRNEALAVDARQELDLKMGVAFTRFQTQYFLNKYDRLDARVVSYGPCQTPTLGFAVQR 243
Query: 225 HDKIRTFKPEPYWLLDLTLN--LNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVD 282
H +I PEPYW LD + + G ++ W R +FD+ T F + V V
Sbjct: 244 HLEIIRHVPEPYWALDASFDDAATGDTIAPAWRRTRLFDEETTRAFLQLVNDANEFRVTS 303
Query: 283 VQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPEN 342
++ + + + +P LNTVE+++ AS+GLGMG H AMQ+AERLY G++SYPRTE+T YP
Sbjct: 304 IEVNAEKRGRPSGLNTVEMLKAASAGLGMGAHRAMQVAERLYMAGHISYPRTESTAYPRG 363
Query: 343 FDLVAVLRQQESSPDWGDHVREVL-SNGISKPRKGKDVGDHPPITPTKLATRTQL-DGDA 400
F+L L Q+S P WG V +L + ++ P++G D GDHPPITP + +T Q+ G+A
Sbjct: 364 FELKQTLTIQKSHPTWGAFVSRLLDESSMTSPKRGVDAGDHPPITPMRASTEDQVGGGEA 423
Query: 401 WRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES 460
WRLYD+I RHFI ++ D Y + A E FT++ K ++ G+T +M +++ S
Sbjct: 424 WRLYDFISRHFIASVSPDCEYETQTATLDAGGEEFTLQGKRVIEHGWTEIMPHRMIEDSS 483
Query: 461 IP-DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
+P G IP++SV++ T+PP+YLTESELI LMEK+GIGTDASIP HINNI R
Sbjct: 484 LPVCVVQGARIPLKSVRLRSESTSPPEYLTESELIGLMEKNGIGTDASIPTHINNIQVRK 543
Query: 520 YVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMR 555
YV V GRR+VP+ LGI LV GY ID ELV PT+R
Sbjct: 544 YVDVAKGRRIVPSQLGITLVQGYHAIDSELVLPTVR 579
>gi|219111227|ref|XP_002177365.1| DNA topoisomerase [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411900|gb|EEC51828.1| DNA topoisomerase, partial [Phaeodactylum tricornutum CCAP 1055/1]
Length = 868
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 245/514 (47%), Positives = 334/514 (64%), Gaps = 12/514 (2%)
Query: 52 KMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLV 111
K+TSV GH+ +DF KY +WD VDP ELF P ++ K + L +EA+ F+V
Sbjct: 60 KITSVAGHVFNVDFPEKYQSWDSVDPAELFEAPIVRKPC--KSSVVRHLEDEARGVHFIV 117
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKT---VWRARFSAITDKDIKAAMWNLVKPNI 168
LW+DCD+EGENI FEV++ H + V+RA FSAI DI+ A +L KP+
Sbjct: 118 LWMDCDREGENINFEVLDCCMHVMKSGGSSNFDRVYRAYFSAINPSDIQKAYNSLGKPDK 177
Query: 169 FEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKI 228
+A SVDARQELDL++G AF+RYQT++FQG+YGDL+++++SYGPCQTPTLGFCV+R+ I
Sbjct: 178 NQALSVDARQELDLKVGIAFSRYQTRYFQGRYGDLNSAVLSYGPCQTPTLGFCVQRYIDI 237
Query: 229 RTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCN-VFFKAVEKEKHVTVVDVQSST 287
+TFKPEPYW+L+L + G ++ W G F+K+ + +A+E V V +
Sbjct: 238 QTFKPEPYWVLELAVMKRGRSLRALWGSGRSFNKNKVEKLLLEALESGPFAKVTSVVAKD 297
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
K + +P LNTV L++ S LG+GPH +Q AERLY GY+SYPRTE++ YP++FD+
Sbjct: 298 KKQGRPIPLNTVALLKACSKALGIGPHATLQTAERLYLSGYLSYPRTESSAYPKSFDIYG 357
Query: 348 VLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYI 407
L+QQ S WG +VRE+L G +K R G D+GDHPPITP + +L GD R+YD +
Sbjct: 358 TLQQQSSDVRWGSYVRELLREGPNKSRGGIDMGDHPPITPCRATRAGELSGDMARVYDLV 417
Query: 408 VRHFIGTLCGDLVYTQKVAKFSV----ADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP- 462
VRHFI ++ D V+ F++ +FT+ K + PGF V+ + E+I
Sbjct: 418 VRHFIASVSQDAVWRSTQIDFAIEALGEKGVFTLRGKEPVSPGFLAVLLHTEYGEENIEV 477
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT 522
PG + ++ + E+ TTPP YLTESELISLMEK+GIGTDASI HI N+ +RNYV
Sbjct: 478 SVVPGTTVR-ANLGIKEKMTTPPTYLTESELISLMEKNGIGTDASISTHIENVQKRNYVA 536
Query: 523 VTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
+ SGRRLVP+ LGIVL GY +ID LV P +RS
Sbjct: 537 LESGRRLVPSKLGIVLAQGYHQIDSSLVLPRVRS 570
>gi|312375379|gb|EFR22766.1| hypothetical protein AND_14242 [Anopheles darlingi]
Length = 752
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 265/532 (49%), Positives = 319/532 (59%), Gaps = 106/532 (19%)
Query: 32 NGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREAT 91
N ACSVHEW G G+ V FKMTSVCGHIMGL+F KYN+WD+VDP ELF+CPTEK+EAT
Sbjct: 33 NNACSVHEWTGQFRGETVRFKMTSVCGHIMGLEFVGKYNSWDRVDPAELFACPTEKKEAT 92
Query: 92 PKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQI-NINSPKTVWRARFSA 150
L++PAFLA EAK C++L+LWLDCDKEGENICFEVM AV I N++S + +RA+FSA
Sbjct: 93 ASLRMPAFLAQEAKGCDYLILWLDCDKEGENICFEVMSAVSGSIHNVHSNRVTFRAKFSA 152
Query: 151 ITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISY 210
ITDKDIK AM NL+ PN EA+SVDARQELDLRIGCAFTR+QTKFFQGKY DLDASLISY
Sbjct: 153 ITDKDIKYAMDNLIHPNENEAKSVDARQELDLRIGCAFTRFQTKFFQGKYADLDASLISY 212
Query: 211 GPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFK 270
GPCQTPTLGFCV+RHD+I+TFKPE +W + +T+ N + + W R +FDK ++
Sbjct: 213 GPCQTPTLGFCVQRHDEIQTFKPETFWYVQVTVGENP-ELKLDWQRVRVFDKEIACIYLN 271
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVS 330
V++ K +AL V +++ S+ G A IA
Sbjct: 272 KVKEHK-----------------EALGVVRMLQ-PSNEFG---EEAKAIA---------- 300
Query: 331 YPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKL 390
R T+ N D GDH PPITP +L
Sbjct: 301 --RDMTSPKKGN--------------DAGDH---------------------PPITPMRL 323
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
ATR +L+ D WR+YDYI RHF+GT+ DL Y KF + E+FT LL PGFT V
Sbjct: 324 ATRNELESDCWRIYDYICRHFLGTVSRDLKYRSHTTKFRIGGELFTATTSVLLDPGFTKV 383
Query: 451 MTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
MTW + KNE F + + I +++VE +T PPDYLTESELISLMEKHGIGTDASIP
Sbjct: 384 MTWQSFAKNELGHQFTANEKVKINDIRLVESQTGPPDYLTESELISLMEKHGIGTDASIP 443
Query: 510 VHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ID ELV PTMRSA Q
Sbjct: 444 -----------------------------------IDPELVLPTMRSAVEQQ 460
>gi|209878332|ref|XP_002140607.1| DNA topoisomerase family protein [Cryptosporidium muris RN66]
gi|209556213|gb|EEA06258.1| DNA topoisomerase family protein [Cryptosporidium muris RN66]
Length = 857
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/525 (44%), Positives = 336/525 (64%), Gaps = 7/525 (1%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
VHE+ LFK+TSV GH+ DF SKY+NW+ +DP++LF PT K E++ K+
Sbjct: 62 VHEYTAYFQHKRALFKVTSVSGHVFETDFPSKYSNWESIDPVDLFDLPTVKNESSSKMI- 120
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVW--RARFSAITDK 154
A L EAK+C+FLVLWLDCD+EGENICFEV+ V+ + +++W RARFS++ K
Sbjct: 121 -AHLLREAKNCDFLVLWLDCDREGENICFEVISVVKDVMAKGRNESLWIFRARFSSVAPK 179
Query: 155 DIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQ 214
D+ AM NL PN EA +VD RQELDL+IG AF+R+QT + + KYGD + S++SYGPCQ
Sbjct: 180 DVIEAMNNLKSPNRDEADAVDVRQELDLKIGVAFSRFQTTYLKTKYGDFNNSILSYGPCQ 239
Query: 215 TPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEK 274
TPTL F V+R DKI F PE ++ L++T+ + +S TW R IFD + + V
Sbjct: 240 TPTLFFVVQRRDKILGFSPEKFYYLNVTIEYKDIILSPTWERKKIFDLQSIQCLYNTVNS 299
Query: 275 EKHVT--VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYP 332
+ V+D++ ++P LNTV+++++AS+ LG+ P AM IAE+LY G+++YP
Sbjct: 300 TYPIIAKVIDIKKKADRISRPLPLNTVQMLKLASNILGISPFQAMNIAEKLYLSGFITYP 359
Query: 333 RTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRK-GKDVGDHPPITPTKLA 391
RTETT+YP++FD + P WG + ++L+ + PR+ G DVGDHPPI P +
Sbjct: 360 RTETTKYPKSFDTKEAASIHKDHPLWGQYTCDILARNYTNPRQDGIDVGDHPPIVPIRSV 419
Query: 392 TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
L GD WRLY+ I RHF+ T+ D+ +T + F + E FT++ + + GF+ +
Sbjct: 420 ISNDLAGDNWRLYELITRHFLATISPDIKFTNEFVIFDINGEKFTLQGRRINEYGFSIIY 479
Query: 452 TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
++ + SIP G + ++S+++ +T PP L+E L+SLMEK+GIGTDAS+PVH
Sbjct: 480 KSKSINSISIPQLDLGMKLNLKSIEICNGETKPPPLLSEGNLLSLMEKNGIGTDASMPVH 539
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
I + +R YV + GR+L PT LG L+HGY ID ELV P +RS
Sbjct: 540 IQKLIERKYVNIIDGRKLEPTRLGNALIHGYMNIDIELVYPMIRS 584
>gi|426393714|ref|XP_004063158.1| PREDICTED: DNA topoisomerase 3-beta-1 [Gorilla gorilla gorilla]
Length = 653
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 235/381 (61%), Positives = 281/381 (73%), Gaps = 4/381 (1%)
Query: 25 LTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-C 83
L+ + +NGACSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS
Sbjct: 26 LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQA 85
Query: 84 PTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPK 141
PTEK+EA PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N K
Sbjct: 86 PTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKAHGGEK 145
Query: 142 TVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG 201
TV+RARFS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG
Sbjct: 146 TVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYG 205
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIF 260
DLD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +F
Sbjct: 206 DLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVF 265
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D+ +F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ A
Sbjct: 266 DREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTA 325
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG 380
ERLYTQGY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D G
Sbjct: 326 ERLYTQGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAG 385
Query: 381 DHPPITPTKLATRTQLDGDAW 401
DHPPITP K AT +L G W
Sbjct: 386 DHPPITPMKSATEAELAGLRW 406
>gi|392892251|ref|NP_001254382.1| Protein Y48C3A.14, isoform c [Caenorhabditis elegans]
gi|371571202|emb|CCF23413.1| Protein Y48C3A.14, isoform c [Caenorhabditis elegans]
Length = 733
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 243/424 (57%), Positives = 294/424 (69%), Gaps = 6/424 (1%)
Query: 143 VWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD 202
V+RA FSAIT+KDIKAAM NL +P+ + SVDARQELDLRIGC+FTR+QTKFFQGKYGD
Sbjct: 12 VYRAHFSAITEKDIKAAMRNLGRPDQNMSHSVDARQELDLRIGCSFTRFQTKFFQGKYGD 71
Query: 203 LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTWSRGHIF 260
LD+++ISYGPCQTPTLGFCV RHD+I FKPE YW+L + T + +G S W RG IF
Sbjct: 72 LDSNVISYGPCQTPTLGFCVTRHDQIVQFKPEQYWVLKTNFTTSDDGQIFSPEWQRGRIF 131
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D VF ++K V+DV K +P ALNTVELMRVASS LGM P M +A
Sbjct: 132 DAEVARVFVDRIKKCHTGLVLDVSKKEARKERPCALNTVELMRVASSSLGMSPSTTMHVA 191
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG 380
E LYTQGY+SYPRTETT Y NFDL L+ WG V +VL++GI +P+ G D G
Sbjct: 192 EALYTQGYISYPRTETTAYSANFDLTGTLKILAGDRKWGSVVSQVLADGIKRPKSGVDKG 251
Query: 381 DHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
DHPPITP + L GD R+Y+Y+ +HF+ TL VY K S DE FT++ K
Sbjct: 252 DHPPITPMR-PNHGGLSGDMSRIYEYVSQHFVATLMKQCVYEVTTVKMSCGDEQFTLQGK 310
Query: 441 YLLHPGFTGVMTWSAMKNE-SIPDF--KPGDLIPIQSVKMVERKTTPPDYLTESELISLM 497
++ PGFT VM W +++ E S+P + G I +Q+ ++ R+TTPP YLTE+ELI+LM
Sbjct: 311 NVVEPGFTAVMPWLSVEEECSVPKSLQQIGAKIELQNAEIQARETTPPGYLTEAELITLM 370
Query: 498 EKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
EKHGIGTDASIPVHIN I QRNYVTV SGRRLVPT LG LV GY K+D ELV PTMR+
Sbjct: 371 EKHGIGTDASIPVHINTITQRNYVTVESGRRLVPTRLGQCLVRGYWKVDPELVLPTMRAE 430
Query: 558 YRVQ 561
Q
Sbjct: 431 LEEQ 434
>gi|118385846|ref|XP_001026048.1| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|89307815|gb|EAS05803.1| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 1374
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 238/525 (45%), Positives = 333/525 (63%), Gaps = 7/525 (1%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
VHE+ G G+ VLFK+TSV GH+ LDF +Y+ W+KV+P+ LFS T K EA P +
Sbjct: 571 VHEFEGQFKGNRVLFKVTSVAGHVYSLDFQKEYDQWNKVNPINLFSAKTIKVEANPSQGV 630
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVR-HQININSPKTVWRARFSAITDKD 155
L EA+D +L+LWLD D+EGENICFEV + + + RA+FS++T D
Sbjct: 631 VKHLEKEAQDASYLILWLDNDREGENICFEVKSICEAFMCKEQNTQQILRAKFSSLTKSD 690
Query: 156 IKAAMWNLVK-PNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQ 214
+ A N+ PN+ E+++VDARQ +DL+IG AFTRYQT FF+ +Y +L+ ++IS+GPCQ
Sbjct: 691 LVQAFKNVRDPPNMNESKAVDARQIIDLKIGAAFTRYQTLFFRNRYPELNENIISFGPCQ 750
Query: 215 TPTLGFCVERHDKIRTFKPEPYWLLDLT-LNLNGVAVSVTWSRGHIFDKSTCNVFFKAVE 273
TPTLGFCVER D+I+ FKP Y+ + T + +G+ V +GHI+D+ N FK V
Sbjct: 751 TPTLGFCVEREDEIKNFKPRLYFRIRATFVTEDGMEVVSYCDKGHIYDQGESNKIFKDVL 810
Query: 274 KEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333
++H+ + V S +K +P+ LNTV+L+++ASS L M P M +AERLY GY++YPR
Sbjct: 811 NQQHIQITQVSSDFGTKQRPEGLNTVQLLKIASSYLHMSPMETMHVAERLYLNGYITYPR 870
Query: 334 TETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR 393
TE+T YP+ F +L +S D+G +L + +PR G D+GDHPPITPT
Sbjct: 871 TESTAYPKAFQFREILNSLQSDSDYGKFASNLLQD-YKQPRSGVDMGDHPPITPTTNYPN 929
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
+ L GD +LYDYI +HFI +L D Y + + S+ + F +++ GFT V
Sbjct: 930 S-LGGDERKLYDYISKHFIASLSEDCKYKKITIQGSICNYNFIARGIQMVNKGFTEVQDH 988
Query: 454 SAMKNESI-PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHI 512
++ +I + + G + + S+ + T+ P Y+TESELISLMEK+ IGTDAS+ HI
Sbjct: 989 ISLGENTIASNLQQGKQLKVTSINQEQEYTSAPGYITESELISLMEKNSIGTDASMATHI 1048
Query: 513 NNICQRNYVTVT-SGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
NI RNYV + S R LVPT LG LVHGYQKID ELV+P +RS
Sbjct: 1049 QNIVNRNYVQINGSNRSLVPTELGRSLVHGYQKIDPELVQPQIRS 1093
>gi|357462899|ref|XP_003601731.1| DNA topoisomerase [Medicago truncatula]
gi|355490779|gb|AES71982.1| DNA topoisomerase [Medicago truncatula]
Length = 1024
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/462 (49%), Positives = 309/462 (66%), Gaps = 32/462 (6%)
Query: 122 NICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELD 181
++ ++ +E+ IN V+RARFS++T+KD+ A+ NLV+PN EA +VDARQE+D
Sbjct: 248 HVAWQFIESTGFNIN-----DVYRARFSSVTEKDVLNALDNLVRPNRDEAMAVDARQEID 302
Query: 182 LRIGCAFTRYQTKFFQGKYGDLDASLIS---------------------------YGPCQ 214
L++G AFTR+QT FFQGKYG+LDA +IS YGPCQ
Sbjct: 303 LKVGVAFTRFQTSFFQGKYGNLDARVISLVFCSLLSSGGPLVINQLLDWICIANSYGPCQ 362
Query: 215 TPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEK 274
TPTLGFCV+R+ +I TFKPE +W L + +G + + W R +FD + +F K V
Sbjct: 363 TPTLGFCVQRYLQINTFKPEKFWSLQPYIIQSGYEILLEWQRSKLFDINVAMMFQKLVAD 422
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRT 334
+ V V ++ ++K +P LNTV L++VASS LG GP AMQ+AERLYTQG++SYPRT
Sbjct: 423 DGIVEVTNISEKPETKGRPVGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFISYPRT 482
Query: 335 ETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRT 394
E+T YP +FD + L Q ++P WG++V +L++G KPR G DVGDHPPITP K A+
Sbjct: 483 ESTAYPPSFDFRSALSAQRNNPTWGNYVEGLLASGYQKPRSGTDVGDHPPITPMKSASED 542
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
L DAW+LY YI ++FIGT+ D Y +K +F V E F ++++ GFT +M W
Sbjct: 543 MLGNDAWKLYQYICQYFIGTVSPDCKYIRKKVEFQVGGESFHCTGQHVITKGFTAIMPWL 602
Query: 455 AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINN 514
A+ ++S+P F+ G I + V++ E TTPPD+LTESELISLMEK+GIGTDASIPVHINN
Sbjct: 603 AINDKSLPSFEEGQKIKLSKVELYEGSTTPPDFLTESELISLMEKNGIGTDASIPVHINN 662
Query: 515 ICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
IC+RNYV V +GR+L PT+LGI LV GYQ ID +L P +RS
Sbjct: 663 ICERNYVQVQAGRKLSPTTLGITLVRGYQSIDPDLCLPDIRS 704
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 79/136 (58%), Gaps = 9/136 (6%)
Query: 18 RPSL-ISLLTPLQ--RMN---GACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNN 71
+PS+ +S+ T L +MN G+ VHE+ G FK+TSV GH+ +DF KY +
Sbjct: 12 KPSIALSIATVLSHGKMNTRRGSTEVHEFDGKFRKAPARFKVTSVIGHVFSVDFPGKYQD 71
Query: 72 WDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAV 131
W DPL+LF K E+ PK + L EA+ C +LVLWLDCD+EGENICFE E +
Sbjct: 72 WAATDPLDLFQAQVIKNESNPKAHICKHLHQEARGCRYLVLWLDCDREGENICFEGGECL 131
Query: 132 RHQININSPKTVWRAR 147
+ INS + + R
Sbjct: 132 ---LFINSDQASYLNR 144
>gi|403352748|gb|EJY75891.1| DNA topoisomerase [Oxytricha trifallax]
Length = 1342
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/531 (43%), Positives = 331/531 (62%), Gaps = 15/531 (2%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
V+ + G G F++TSV GH+ DF Y + ++DPL LF PT ++ +
Sbjct: 552 VYTFKGNFQGKTAHFRVTSVAGHVYNRDFPLDYQDR-RMDPLALFDAPTVRKLDGSSRTI 610
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L + +F+VLWLDCDKEGENICFEV++ R I + + V+RA+FS+I KDI
Sbjct: 611 AKHLQTVSSGIDFMVLWLDCDKEGENICFEVLDICRKNIPKSKRQRVFRAKFSSIAKKDI 670
Query: 157 KAAMWNL-VKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKY---GDLDASLISYGP 212
+ A + +P+ E+ SVDARQ +DL+IG AF+R+QT++FQ Y G + +I+YGP
Sbjct: 671 QTAFDTVKAEPSYNESVSVDARQVMDLKIGVAFSRFQTQYFQ--YLLRGQHEIRMITYGP 728
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTL--NLNGVAVSVTWSRGHIFDKSTCNVFFK 270
CQTPTLGFCV++ +KI+ F PEPYW ++ + G + S+ W RG I+D++ +
Sbjct: 729 CQTPTLGFCVDQAEKIKKFIPEPYWSIETVIADKDRGKSYSLKWGRGKIYDRTVTTIVHS 788
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVS 330
+ V+DVQ S + KPQ LNTV++++VAS GM H M+ AE LY +GY++
Sbjct: 789 RIACFDSAEVIDVQKSKAVQGKPQGLNTVKMLKVASKTYGMSAHDTMKTAEHLYLRGYIT 848
Query: 331 YPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKL 390
YPRTE+T Y NF+ +L+Q + + +WG + +L+ + KP+KG D GDHPPITP K
Sbjct: 849 YPRTESTTYSANFNFDEILQQHQQNSEWGSYATRLLNGMMVKPKKGVDAGDHPPITPVKS 908
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVAD-----EMFTMEAKYLLHP 445
A+R L W+LY++I R+F G++ D Y Q F V + E F ++ L+
Sbjct: 909 ASRASLGEREWKLYNFITRNFFGSISPDASYDQVKVLFQVGNKESIIENFKLKGNILVEH 968
Query: 446 GFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
GF +M W ++ IP FK G + ++ +K+ E KT P YLTE++LIS MEK+GIGTD
Sbjct: 969 GFLEIMPWLLAADKEIPVFKIGQQVEVRQIKITEGKTQAPGYLTEAKLISRMEKNGIGTD 1028
Query: 506 ASIPVHINNICQRNYVTVTS-GRRLVPTSLGIVLVHGYQKIDRELVEPTMR 555
ASIP HINNI +R +VTV GR+LVPT LG LV GY +ID ELV P++R
Sbjct: 1029 ASIPTHINNIIERKFVTVLDPGRQLVPTPLGSALVKGYCQIDPELVLPSIR 1079
>gi|156084162|ref|XP_001609564.1| DNA topoisomerase [Babesia bovis T2Bo]
gi|154796816|gb|EDO05996.1| DNA topoisomerase, putative [Babesia bovis]
Length = 878
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 233/540 (43%), Positives = 325/540 (60%), Gaps = 14/540 (2%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREA 90
++ C E G V FK+TS GHI + F +YN W+ +P+ELF+ EA
Sbjct: 49 ISNTCITWECRGKFLSTTVDFKVTSTAGHIYSVAFAPRYNCWNSTNPVELFNGEIILEEA 108
Query: 91 TPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAV-RHQININSPKTVWRARFS 149
+P K+P LA+EAK C +L+L LD D+EGENI FEV+ +H + I S K ++RARFS
Sbjct: 109 SPDSKIPRHLASEAKGCSYLLLCLDNDREGENIAFEVIRVCHQHLVKIGS-KQIFRARFS 167
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
A+T DI A+ NL PN E+ +V ARQ +DLR+GCAFTR+QT FFQGKYGDLD++ IS
Sbjct: 168 ALTRADILRAVDNLCDPNKLESDAVRARQTIDLRVGCAFTRFQTTFFQGKYGDLDSTCIS 227
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFF 269
YGPCQTPTL FCV+R++ I F+ EPY+ L ++ G + TW+RG IFDKS +F
Sbjct: 228 YGPCQTPTLFFCVDRYNAIARFQEEPYYKLICDISYEGQYIPFTWNRGRIFDKSVARIFQ 287
Query: 270 KAVEKEKHVTVVDVQSSTKS-----------KTKPQALNTVELMRVASSGLGMGPHHAMQ 318
+ V EK+ ++ + + K + P+ALNTV +++ ASS GMGPH MQ
Sbjct: 288 QLVRCEKYYNILQLMGANKGVLTDIVTKRSINSSPKALNTVTMLKEASSRFGMGPHKTMQ 347
Query: 319 IAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGIS-KPRKGK 377
AE LY GY+SYPRTET YP +FD +L++ + P++ + V ++ +G + P+ G
Sbjct: 348 TAEHLYLNGYISYPRTETDCYPTSFDWAELLKKLHTVPEYTNLVDLLMQSGNTLGPQGGH 407
Query: 378 DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTM 437
DVGDHPPI P + ++ L GD W+LYD IVRHF+ ++ G V E F
Sbjct: 408 DVGDHPPIIPVRCVSQGTLTGDDWKLYDLIVRHFLASVAGPCTTETTTYDLDVGSETFQF 467
Query: 438 EAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLM 497
++ G+T ++ S G+ + ++ E T+PP L+ES+L+ M
Sbjct: 468 SNTRVVRQGYTALLPKSQNYVSIALKLTKGEGCDVAKFRVEEGTTSPPPLLSESDLLDHM 527
Query: 498 EKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
E GIGTDAS+ HI+NI RNYV + RR+ PT LG LV GY ++D ELV P++R A
Sbjct: 528 ESKGIGTDASMATHIHNIFTRNYVRLLGNRRIEPTKLGKALVDGYMQVDPELVLPSVRGA 587
>gi|340508777|gb|EGR34411.1| hypothetical protein IMG5_012580 [Ichthyophthirius multifiliis]
Length = 789
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 219/537 (40%), Positives = 331/537 (61%), Gaps = 12/537 (2%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
VHE+ G +F ++TSV GH+ LDFT Y+NWD+ DP+ELF T+K E+ P+ K+
Sbjct: 90 VHEFQGNIFNQNAFIRITSVAGHVYSLDFTRDYSNWDRTDPIELFKAKTQKIESNPQQKV 149
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQI---NINSPKTVWRARFSAITD 153
L E+KDC +LVLWLD D+EGENICFEV Q+ N N +T+ RA+FS++T
Sbjct: 150 IKHLEQESKDCSYLVLWLDNDREGENICFEVKRICEPQMIKENTNKLQTL-RAKFSSLTK 208
Query: 154 KDIKAAMWNLVK-PNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGP 212
KD+K A ++ PN+ + +VDARQ +DL++G AF+R+QT +F+ KY DL+ +I+YGP
Sbjct: 209 KDLKEAYQKIIDPPNLNDCLAVDARQIIDLKVGVAFSRFQTTYFRKKYPDLNEKMITYGP 268
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYW--LLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFK 270
CQTPTLGFCV R D+I++FKP+ ++ L+ + + G+IF++ N
Sbjct: 269 CQTPTLGFCVRREDEIKSFKPKLFYRLLIQFRKKDEQIDTQAVFENGNIFNQQEANSLLT 328
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVS 330
+ K+K V DV S K +P+ LNTV+L+++ SS L + P M +AE+LY QG+++
Sbjct: 329 KIIKQKEGQVFDVFSEKGIKGRPEGLNTVQLLKMGSSYLHLSPQQTMHVAEKLYLQGFIT 388
Query: 331 YPRTETTQYPENFDLVAVLRQ--QESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPT 388
YPRTE+T Y +NF + R Q + + + NGI KP++G D+GDHPPITPT
Sbjct: 389 YPRTESTSYAKNFPFEDICRSLCQLKNSQVSQDAQLLFRNGIYKPKQGVDIGDHPPITPT 448
Query: 389 K-LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
+ + QL + LY+Y+ +HF+ ++ D + + +V F +++ GF
Sbjct: 449 NYVPSNNQLRNEESNLYEYVCKHFMASISADCSFMKSQISINVNGLNFKCTGVQIINKGF 508
Query: 448 TGVMTWSAMKNESIP-DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDA 506
+M W ++ ++P G+ + I + ++ + TPP YLTE+ELI+LMEK+ IGTDA
Sbjct: 509 IEIMDWISISENNLPIGILKGNKVEITTTRLEQEYQTPPGYLTETELINLMEKNKIGTDA 568
Query: 507 SIPVHINNICQRNYVTVT-SGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQA 562
S+ HIN IC+R YV ++ + R+L+P+ +G L+ GYQ ID LV P +RS Q
Sbjct: 569 SLATHINTICEREYVKISGNNRQLIPSDMGRCLIKGYQLIDESLVLPEIRSQIENQV 625
>gi|412993300|emb|CCO16833.1| predicted protein [Bathycoccus prasinos]
Length = 949
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 248/580 (42%), Positives = 346/580 (59%), Gaps = 57/580 (9%)
Query: 33 GACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP 92
G+ +HE+ P L + TSV GH+ +DF K+ +WD +DP LF C TEK+
Sbjct: 69 GSIEIHEFYRPFLRKKCLHRFTSVAGHVCSIDFPDKFQDWD-LDPKLLFDCKTEKKVTAG 127
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAV--RHQININSPKTVWRARFSA 150
+++ L EA+ C+ LVLWLDCD+EGENICFEVM+AV R + + V+RA+FSA
Sbjct: 128 RIR--GSLEREARTCDALVLWLDCDREGENICFEVMDAVVPRMRGGGGRYENVYRAKFSA 185
Query: 151 ITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISY 210
I+ ++ AM NL KPN E+ +VDARQELDL++G AFTR+QTK+FQ K+ D+ +SY
Sbjct: 186 ISKPSVENAMKNLTKPNKNESDAVDARQELDLKMGVAFTRFQTKYFQDKFSGFDSRCVSY 245
Query: 211 GPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL-------------------NLNGVAVS 251
GPCQTPTLGFCV+RH +I F PE +W L L L + NG+A
Sbjct: 246 GPCQTPTLGFCVKRHLEIIRFVPESFWRLKLNLPTVAAASLKQSDDDVVIVDDDNGMATK 305
Query: 252 VT--------WSRGHIFDKST-------CNVFFKAVEKEKHVTVVDVQSSTKSKTKPQAL 296
T W R +FD+S+ C+ F K +K+K T+V S +SK P +
Sbjct: 306 TTSYEIAEWKWHRERVFDESSAISLEALCSDFLK--KKDKKGTLVGTIRSKQSKRPPPGM 363
Query: 297 NTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSP 356
NTVE+++ S +G+G H AMQIAERLY G++SYPRTE++ YP FD +++ Q S+
Sbjct: 364 NTVEMLKTCSK-MGIGAHRAMQIAERLYLDGFISYPRTESSAYPPGFDFKSIVASQTSND 422
Query: 357 DWGDHVREVLS-NGISKPRKGKDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGT 414
+WGD +++LS + I KP G+D GDHPPITP + R ++G+ +R+Y+ I RHF+ T
Sbjct: 423 EWGDVAKKILSFSSIRKPSGGQDAGDHPPITPAGRFGNRNSMNGEMFRVYELISRHFLAT 482
Query: 415 LCGDLVYTQKVAKFSVAD-EMFTMEAKYLLHPGFTGVMTWSAMKNESIPD-FKPGDL--- 469
L DLV ++ +A+ E + + +L G+T + A K + IPD ++ D
Sbjct: 483 LLPDLVLENIESEIVIAESERWKAKGVKILDFGWTEALPRRAPKLKIIPDAYQLSDNESK 542
Query: 470 ------IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV 523
+ + SV + +T PP+YLTESELI MEK+GIGTDASIP HIN + R Y +
Sbjct: 543 NNKSRDVDVISVTIERGETQPPNYLTESELIGTMEKNGIGTDASIPTHINTVEARKYCEI 602
Query: 524 T--SGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
GRR++PT LGI L Y ID EL PT+R+ Q
Sbjct: 603 VPRDGRRVIPTDLGITLCRAYASIDEELALPTVRAHIEKQ 642
>gi|300175415|emb|CBK20726.2| unnamed protein product [Blastocystis hominis]
Length = 891
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 240/549 (43%), Positives = 331/549 (60%), Gaps = 34/549 (6%)
Query: 33 GACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP 92
G +H + G G V FK+TSV GH+ LDF +Y NW+K D L+LFS T +EA+
Sbjct: 33 GKLPIHIFDGEFLGKQVTFKVTSVVGHVFNLDFAPEYQNWEKTDCLDLFSAKTIHKEASG 92
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQI-NINSPKTVWRARFSAI 151
+ L + + +++VLWLDCD EGENICFEV+ V+ + N K ++RA +SAI
Sbjct: 93 GVI--HHLRSVGANVDYVVLWLDCDNEGENICFEVLNCVKPVMKNWRETKRIYRAYYSAI 150
Query: 152 TDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYG 211
T DI AM L PN EA +VDARQELDL++G AF+R+QT+FF+ KY DLD+S+ISYG
Sbjct: 151 TAPDIHKAMRTLKDPNENEAHAVDARQELDLKVGVAFSRFQTQFFRNKYSDLDSSVISYG 210
Query: 212 PCQTPTLGFCVERHDKIRTFKPE--------PYWLLDLTLNLNGV---AVSVTWSRGHIF 260
PCQ PTLGFCV+R D I+ FK E P LLD + + ++ +R F
Sbjct: 211 PCQIPTLGFCVDRFDLIQNFKGEAFPRFHFSPAALLDAERHRQEKLPRSPALLGARPASF 270
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
VF + + +TV+ V+ S ++ +P +NTV ++++AS LGMGP A A
Sbjct: 271 -----FVFSRKLASVSSLTVLSVRESNGARVRPVPMNTVTMLKLASRSLGMGPKEATVYA 325
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG 380
ERLY +GY+SYPRTETT YPE+++L+ + Q ++P WG +V +++ G+ PRKG D G
Sbjct: 326 ERLYLKGYISYPRTETTAYPEHYNLLGAVEQHRTNPRWGGYVNALIAGGLRVPRKGVDAG 385
Query: 381 DHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
DHPPITP + L LYD I HF+ T+ D + +F DE F+ +
Sbjct: 386 DHPPITPVVSVDPSTLPSGESALYDLIATHFLATVSDDCKFVTTFVRFGGGDETFSYSYR 445
Query: 441 YLLHPGFTGVMTWSAMKNESIPD--------------FKPGDLIPIQSVKMVERKTTPPD 486
+ PGFT + S ++ES + F+ G+++ + + + T+ P
Sbjct: 446 RVTQPGFTA-LYHSQFEDESDDENDASEAELAMEAYSFQKGEVVEVDRIAERDGYTSAPG 504
Query: 487 YLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKID 546
YLTESELISLMEK+GIGTDASIPVHI NI +RNYV++ R L+PT LGIVL+HG ID
Sbjct: 505 YLTESELISLMEKNGIGTDASIPVHIANILERNYVSLGPKRTLIPTKLGIVLIHGIYSID 564
Query: 547 RELVEPTMR 555
ELV P +R
Sbjct: 565 PELVLPIVR 573
>gi|118383692|ref|XP_001025000.1| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|89306767|gb|EAS04755.1| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 1386
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 227/551 (41%), Positives = 334/551 (60%), Gaps = 26/551 (4%)
Query: 33 GAC---SVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
G C +V + G +FG L K+TSV GHI DFT +Y +W +VDP +LF+ T K+E
Sbjct: 271 GICKFSNVFTFYGHIFGKKALIKVTSVIGHIYTSDFTQEYQDWRRVDPYKLFNATTLKKE 330
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
P ++ L EA +L+LWLD D+EGENICFEV+ + ++ + ++RA+FS
Sbjct: 331 TNPNSQIIQHLQKEAMGASYLILWLDNDREGENICFEVLTICKPELIKEDFQQIFRAKFS 390
Query: 150 AITDKDIKAAMWNL-VKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
+IT DI+ A L + PN E+++VDARQ +DL++G AF+R+QT++ KY DL+ I
Sbjct: 391 SITPIDIRKAFDELSIGPNFNESQAVDARQIIDLKVGVAFSRFQTRYLVRKYEDLNNKKI 450
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNL-NGVAVSVTWSRGHIFDKSTCNV 267
++GPCQTPTL FCV+R D+I+ F +P++ + ++L +++ W++ +D+
Sbjct: 451 TFGPCQTPTLSFCVQRDDEIKDFISKPFYRIIPKISLVPNELINLEWTKERTYDQQEALD 510
Query: 268 FFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQG 327
+ +E +VV V + K KP ALNTV +++AS G+GP +AMQ+AE+LY G
Sbjct: 511 VKQELESIGQTSVVKVDNKETQKIKPVALNTVNFLKMASKQYGLGPQNAMQVAEKLYLGG 570
Query: 328 YVSYPRTETTQYPENFDLVAVLR---QQESSPDWGDHVREVLSNGISKPRKGKDVGDHPP 384
+++YPRTE+T+YP+ FD +VL Q + + + +++ NGI K R GKDVGDHPP
Sbjct: 571 FITYPRTESTKYPDKFDFNSVLHAVCQYHQNQNISIYAQKLQQNGIHKSRLGKDVGDHPP 630
Query: 385 ITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDL-VYTQKV----------------AK 427
ITPT R QL D +Y+ + RHF+ T+ D +Y +KV
Sbjct: 631 ITPTNKIMRQQLSRDEQNIYELVCRHFLATVSSDCRLYKKKVNFYCKIYFYQTKKNNKVL 690
Query: 428 FSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDY 487
F ++ F++ ++ G+ + W + IP+F GD I + SV + KT PPD+
Sbjct: 691 FQTGNQTFSLIGTAVIDKGYLEALPWQKIYENEIPNFSEGDQIYLHSVDIHSGKTQPPDH 750
Query: 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT-SGRRLVPTSLGIVLVHGYQKID 546
LTES+LISLME++GIGTDAS+ HI NIC R YV V RRLVPT LG L+H Y +ID
Sbjct: 751 LTESDLISLMEQNGIGTDASMAQHIQNICDREYVQVVGQARRLVPTELGSSLIHAYAEID 810
Query: 547 RELVEPTMRSA 557
ELV P +RS+
Sbjct: 811 PELVAPNLRSS 821
>gi|145527750|ref|XP_001449675.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417263|emb|CAK82278.1| unnamed protein product [Paramecium tetraurelia]
Length = 949
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 236/564 (41%), Positives = 340/564 (60%), Gaps = 11/564 (1%)
Query: 5 VKKLVPASEIKLARPSLISLLTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLD 64
+K L+ A + +A ++ ++ G + + + G G F +T+ GH+ D
Sbjct: 30 LKILMVAEKNSIAEAVAYAIGNKVRAKKGRQAFYYFSGMFKGQQANFTVTATNGHLFSRD 89
Query: 65 FTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENIC 124
F +Y NW+ DP++LF T K+ A K + L + ++L+LWLD D+EGENIC
Sbjct: 90 FPKEYENWNSCDPIDLFQAKTIKKPAN-KAGI-GLLRKCSSGIDYLILWLDNDREGENIC 147
Query: 125 FEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL-VKPNIFEARSVDARQELDLR 183
FEV E IN+ + RA+FS+IT D+K A L PNI E+ SVDARQ +DL+
Sbjct: 148 FEVDEVKSKVINLGNLIRKLRAKFSSITQTDLKYAYNQLNTGPNILESESVDARQIIDLK 207
Query: 184 IGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLT- 242
+G AF+R+QT FQ KY +D ++++GPCQTPTLGFCVERH++I F P ++ + L+
Sbjct: 208 VGVAFSRFQTLHFQKKYS-MD-QMVTFGPCQTPTLGFCVERHEEIVNFVPRAFYTIKLSI 265
Query: 243 LNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELM 302
LN G V W I+ + + ++K K V+ Q KSK +P+ +NTV L+
Sbjct: 266 LNNVGYKQEVEWLGQQIWKEPEAKQVVQQLQKFKQGDVISQQVEQKSKPRPEGINTVSLL 325
Query: 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR--QQESSPDWGD 360
+ ASS LG+GP AM +AERLY GY+SYPRTETT YP F ++ Q+ P +
Sbjct: 326 KFASSYLGLGPQQAMHVAERLYLNGYISYPRTETTAYPHEFPTPKIINNLQKYKDPLISE 385
Query: 361 HVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLV 420
H + + +NG S P++G DVGDHPPITPT+ + L G+ +Y+Y+V+ F+ D
Sbjct: 386 HSKYLKTNGHSNPKQGVDVGDHPPITPTENVPQNNLYGEEKTMYEYVVKMFLAAHSKDCK 445
Query: 421 YTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM-KNES-IPDFKPGDLIPIQSVKMV 478
Y KF V D F ++KY+L PGFT V TW A+ +N+S + F + + I V+
Sbjct: 446 YENHTLKFFVGDHQFKFQSKYILDPGFTKVATWLAITENKSDLTKFVTNNKVQIGFVEYQ 505
Query: 479 ERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT-SGRRLVPTSLGIV 537
+ +T+PPD+LTE+ELI+LM+K IGTDAS+ HINNIC+R YV V S R+L PT LG+
Sbjct: 506 QGQTSPPDHLTETELITLMDKFKIGTDASMATHINNICERQYVKVEGSSRKLKPTDLGLS 565
Query: 538 LVHGYQKIDRELVEPTMRSAYRVQ 561
LV GY++ID +LV P +RS+ Q
Sbjct: 566 LVRGYKRIDPDLVAPQLRSSIESQ 589
>gi|146182668|ref|XP_001024996.2| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|146143729|gb|EAS04751.2| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 858
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 229/561 (40%), Positives = 338/561 (60%), Gaps = 16/561 (2%)
Query: 5 VKKLVPASEIKLAR--PSLISLLTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMG 62
V+ L+ A + +AR +S QR N VH + F L K+TSV GHI
Sbjct: 6 VQVLMVAEKPSIARTIAQALSQQVHTQRRNNH-EVHFFPSYFFQMPCLIKVTSVVGHIFS 64
Query: 63 LDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGEN 122
DF+ +YN D VDP++LF PT K+ ++P + L NEA+ C FLVLWLD D+EGEN
Sbjct: 65 TDFSPEYNGND-VDPIKLFDAPTIKKFSSPSSTIIQHLKNEAQGCNFLVLWLDNDREGEN 123
Query: 123 ICFEVMEAVRHQINI--NSPKTVWRARFSAITDKDIKAAMWNLV-KPNIFEARSVDARQE 179
ICFEV++ +N+ + K ++RA+FS+IT DI A L+ +P++ ++ +VDARQ
Sbjct: 124 ICFEVIQVCDSFLNVFDRNSKYIFRAKFSSITQVDIIKAYEQLIAEPDLNQSLAVDARQI 183
Query: 180 LDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLL 239
LDL++G +F+++QT++ Q KY ISYGPCQTPTL FCVERHD+I FKP+ Y+ +
Sbjct: 184 LDLKLGLSFSKFQTRYLQNKYNIQGKKKISYGPCQTPTLAFCVERHDEIENFKPQTYYTV 243
Query: 240 DLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTV 299
++ L+ A WS+ FD+ V++ + V + + K++P LNTV
Sbjct: 244 EVNLSEYATA---KWSKEQTFDQEEAKKVLSEVQQSNQLMVKSISTVQAIKSRPVGLNTV 300
Query: 300 ELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSP--D 357
++R+AS +GPH A+ IAE LY G+++YPRTETT+YP FD +VL +S +
Sbjct: 301 NMLRIASKKYEIGPHDAIHIAESLYLLGFITYPRTETTKYPGEFDFKSVLHAISNSKFNN 360
Query: 358 WGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
++ + +LS ++KP KG D GDHPPITPT+ A ++ L+ ++Y+ + ++F+G+L
Sbjct: 361 MANYAKGLLSEPLNKPYKGVDSGDHPPITPTQNAPQS-LNPQQMKIYELVCKNFLGSLSQ 419
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSA--MKNESIPDFKPGDLIPIQSV 475
D S F M+ LLH G+ ++ W + + N I + G I +
Sbjct: 420 DAQIENTTYILSSGQNEFEMKKSILLHSGYLDIVPWESVCLSNPKIEKIEEGVAIKYEQA 479
Query: 476 KMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT-SGRRLVPTSL 534
+++ T PP YL+ES+LI LME++GIGTDAS+P HINNI RNYV V R+L+PT L
Sbjct: 480 EVLTLLTQPPSYLSESDLIGLMEQNGIGTDASMPQHINNIILRNYVYVNIKERQLIPTQL 539
Query: 535 GIVLVHGYQKIDRELVEPTMR 555
GI L+H Y+ ID +LV P +R
Sbjct: 540 GIALIHAYKDIDNQLVAPELR 560
>gi|452823186|gb|EME30198.1| DNA topoisomerase III alpha [Galdieria sulphuraria]
Length = 853
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 235/548 (42%), Positives = 329/548 (60%), Gaps = 37/548 (6%)
Query: 35 CSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKL 94
C VHE+ G G + K+TSV GH+ DFT +YN+W+ V+ ELF K A
Sbjct: 36 CRVHEFRGYFRGQMANIKVTSVLGHVYSFDFTKEYNDWNLVEAEELFFAGVRKVVADSGS 95
Query: 95 KLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP------KTVWRARF 148
K+ LA EA ++LVLWLDCD+EGENI FEV+ V+H + N P V+RA+F
Sbjct: 96 KVVRHLATEAIGVDYLVLWLDCDREGENIAFEVISCVKHSLQ-NVPVIYGNRANVFRAKF 154
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
SA+T KDI AM NL + +A +VD R E+DL++G AFTR+QT++F K+ LD+ L+
Sbjct: 155 SALTTKDICRAMENLTYVDTNQASAVDVRAEIDLKVGVAFTRFQTRYFHDKFSSLDSKLV 214
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVF 268
SYGPCQTPTLGFCV R D+I F PE ++L+ + + N + SRG IF++ +
Sbjct: 215 SYGPCQTPTLGFCVGRLDEISKFSPETFFLVVVNVRKNNRTTNWYSSRGKIFERKVASAI 274
Query: 269 FKAVEKEKHVT---VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
+ + ++D +S + + +P LNTVEL+++AS L M PH Q+AE LYT
Sbjct: 275 VERINSYSSGISGKIIDRTTSKERRHRPLPLNTVELLKLASKRLKMSPHQVAQVAESLYT 334
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNG--ISKPRKGK-DVGDH 382
QG +SYPRTE+++YP +FD+ AVL + E + W V+ + G ++K R+G D GDH
Sbjct: 335 QGLISYPRTESSKYPSSFDIEAVLSELEKTSTWFPIVK-IFREGKYLNKSRQGGVDKGDH 393
Query: 383 PPITPTKLATRTQL-DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKY 441
PPITP + A R L + + R+Y+ IV F+ ++ D V + ++ E F +
Sbjct: 394 PPITPVRGAERGSLRNAEHERVYELIVYSFLASVSEDAVIMSQQYWMLLSGEKFVFSQRK 453
Query: 442 LLHPGFTGVMTWSAM-------------KNESIPDFKPGDLIPIQSVKMVERKTTPPDYL 488
L+ PG+ S +NESI DF +V + E +T PP+YL
Sbjct: 454 LVVPGWLEFSNSSNHMESLNMNSEIFFEQNESIEDF---------TVSLEEMQTEPPEYL 504
Query: 489 TESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRE 548
+ES+L+ LMEK+GIGTDASIP HINNI R YV ++S RRL+PT LGI+L GYQKID +
Sbjct: 505 SESDLVGLMEKYGIGTDASIPTHINNIITRGYVRLSSERRLIPTQLGILLYRGYQKIDPQ 564
Query: 549 LVEPTMRS 556
LV P +RS
Sbjct: 565 LVSPVVRS 572
>gi|414886208|tpg|DAA62222.1| TPA: hypothetical protein ZEAMMB73_837809 [Zea mays]
Length = 374
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 200/369 (54%), Positives = 253/369 (68%)
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
M NLV PN E+ SVDARQE+DL++G AFTR+QT++FQGKYG+LD+ +ISYGPCQTPTLG
Sbjct: 1 MDNLVLPNKDESLSVDARQEIDLKVGVAFTRFQTRYFQGKYGNLDSRVISYGPCQTPTLG 60
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
FCV+RH +I TFKPE +W L + + + + W R +FD +F K V + +
Sbjct: 61 FCVQRHQQITTFKPEKFWSLKTYIIKDSDEIQLEWDRKKLFDFDVTVMFQKMVISDGTLK 120
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQY 339
V D+ + KT+P LNTV +++VASS LG+GP AM +AERLYTQG++SYPRTE+T Y
Sbjct: 121 VADISVKEECKTRPSGLNTVNMLKVASSALGIGPQTAMHLAERLYTQGFISYPRTESTAY 180
Query: 340 PENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGD 399
P +FD L ++P W + VR++L G KPR+G D GDHPPITP + AT L D
Sbjct: 181 PSSFDFRGALAALLNNPLWSNDVRKLLDAGFVKPRQGHDAGDHPPITPMRSATEASLGTD 240
Query: 400 AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
AWRLY YI +HFIGT+ D YT+ +F+ E F + GFT +M W A+
Sbjct: 241 AWRLYQYICQHFIGTVSPDCRYTRTAIEFTSGGETFHCVGYRVTSKGFTSIMPWLAVSEN 300
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
S+P FK GD + I + E TTPPDYLTESELISLMEK+GIGTDASIPVHINNIC+RN
Sbjct: 301 SLPAFKKGDSVSIHKADIYEGSTTPPDYLTESELISLMEKNGIGTDASIPVHINNICERN 360
Query: 520 YVTVTSGRR 528
YV V SGRR
Sbjct: 361 YVQVNSGRR 369
>gi|222641861|gb|EEE69993.1| hypothetical protein OsJ_29901 [Oryza sativa Japonica Group]
Length = 729
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/415 (50%), Positives = 270/415 (65%), Gaps = 13/415 (3%)
Query: 141 KTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKY 200
+ ++RA+FS++T+KDI AM NLV P+ EA +VDARQE+DL+ + +FF Y
Sbjct: 15 RRIFRAKFSSVTEKDIMDAMNNLVLPSKDEALAVDARQEIDLK------NFVLQFFPLFY 68
Query: 201 GDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIF 260
I YGPCQTPTLGFCV+R+ +I TFKPE +W L + +G + + W R +F
Sbjct: 69 -------IRYGPCQTPTLGFCVQRYQQITTFKPEKFWSLKTYVIKDGNEIQLEWDRKKLF 121
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D +F K V + + V D+ + K +P LNTV L++VASS LG+GP AM +A
Sbjct: 122 DFDVTVMFQKMVASDGILKVTDISVKEECKARPPGLNTVNLLKVASSALGIGPQTAMHLA 181
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG 380
ERLYTQG++SYPRTE+T YP +FD + L +P W + VR +L G KP++G D G
Sbjct: 182 ERLYTQGFISYPRTESTAYPSSFDFRSALAALAHNPLWSNDVRTLLDTGFVKPKQGHDAG 241
Query: 381 DHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
DHPPITP +LAT L DAWRLY YI +HFIGT+ D YT+ +F+ E F
Sbjct: 242 DHPPITPMRLATEEALGTDAWRLYQYICQHFIGTVSPDCRYTRTSIEFTSGGETFHCVGN 301
Query: 441 YLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKH 500
+ GFT +M W A+ +IP +K GD + I V + E TTPPDYL+ESELISLMEK+
Sbjct: 302 RVTSKGFTSIMPWLAVSENNIPAYKKGDAVSIHKVDIYEGSTTPPDYLSESELISLMEKN 361
Query: 501 GIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMR 555
GIGTDASIPVH+NNIC+RNYV V SGRRLVPT LG L+ GYQ ID +L P +R
Sbjct: 362 GIGTDASIPVHVNNICERNYVQVNSGRRLVPTPLGTTLIRGYQCIDADLCLPDIR 416
>gi|403304311|ref|XP_003942748.1| PREDICTED: DNA topoisomerase 3-beta-1 [Saimiri boliviensis
boliviensis]
Length = 838
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 241/500 (48%), Positives = 299/500 (59%), Gaps = 65/500 (13%)
Query: 66 TSKYNNWDKVDPLELFS-CPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENIC 124
T KYN WDKVDP ELFS PTEK+EA PKL + FL E + C+++VLWLDCDKEGENIC
Sbjct: 105 TGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENIC 164
Query: 125 FEVMEA--VRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDL 182
FEV++A + KTV+RAR + T K++ L P + + A L
Sbjct: 165 FEVLDAGFPVMEKAYGGEKTVFRARTLSSTKSLRKSS--RLGTPMVTIPSTGQA-----L 217
Query: 183 RIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLT 242
IG G D D SL+ L + D++R F E + ++
Sbjct: 218 GIGRG----------GVNTDKDRSLL---------LDW-----DRVRVFDRE---IAQMS 250
Query: 243 LNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELM 302
LN+ + EK V K+K +P ALNTVE++
Sbjct: 251 LNMTKL--------------------------EKEAQVEATSRKEKAKQRPLALNTVEML 284
Query: 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHV 362
RVASS LGMGP H MQ ERLYTQGY+SYPRTETT PENFDL LRQQ + P W D V
Sbjct: 285 RVASSSLGMGPQHTMQTTERLYTQGYISYPRTETTHCPENFDLKGALRQQANHPYWADMV 344
Query: 363 REVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYT 422
+++L+ GI++PRKG D G H PITP + AT +L GDAW L +YI RHF+ T+ D Y
Sbjct: 345 KQLLAEGINRPRKGHDAGHHLPITPMRSATEAELGGDAWWLCEYITRHFVATVSHDCKYL 404
Query: 423 QKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERK 481
Q F + E+FT K +L PGFT +M W ++ ES+P + GD + VKM+E++
Sbjct: 405 QSTISFRIGPELFTCSGKTVLSPGFTEIMPWQSVPLEESLPTCQRGDTFTVSEVKMLEKQ 464
Query: 482 TTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHG 541
T+PPDYLTE+ELI LME+HGIGTDASIPVHI NICQ NYVTV SGRRL PT+LGIVLV G
Sbjct: 465 TSPPDYLTEAELIMLMERHGIGTDASIPVHI-NICQHNYVTVESGRRLKPTNLGIVLVDG 523
Query: 542 YQKIDRELVEPTMRSAYRVQ 561
Y KID ELV PT+RSA Q
Sbjct: 524 YYKIDAELVLPTIRSAVEKQ 543
>gi|167393819|ref|XP_001740725.1| DNA topoisomerase 3-beta-1 [Entamoeba dispar SAW760]
gi|165895052|gb|EDR22857.1| DNA topoisomerase 3-beta-1, putative [Entamoeba dispar SAW760]
Length = 840
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 233/564 (41%), Positives = 331/564 (58%), Gaps = 22/564 (3%)
Query: 8 LVPASEIKLARPSLISLLT--PLQRMNG---ACSVHEWVGPLFGDLVLFKMTSVCGHIMG 62
L+ +E L S+ + L+ P++ G +C VHE+ G + KMTSV GH+
Sbjct: 3 LLMVAEKPLLAESIANFLSLGPVKTRKGIAPSCPVHEFNCKFKGKITKAKMTSVAGHVYT 62
Query: 63 LDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGEN 122
+F + NW VDP +LF+C K EA PK +P+ L NEAK C LVLWLDCD+EGEN
Sbjct: 63 CEFERAFQNWS-VDPRDLFNCKVIKVEANPKTHIPSHLRNEAKGCNGLVLWLDCDREGEN 121
Query: 123 ICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDL 182
ICFEVME + ++RA FS+IT KDI A +L +P+ A +VD RQE+DL
Sbjct: 122 ICFEVMENTVDYMTKTCK--IYRALFSSITKKDITEAFNHLGQPDERLAEAVDCRQEIDL 179
Query: 183 RIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLT 242
R+G AFTR QTKF + ++ L SLIS+GPCQTPTLGFCV+R +I F +P++ L +
Sbjct: 180 RVGVAFTRLQTKFLKERFPKLGDSLISFGPCQTPTLGFCVDRQKEIDNFVSKPFYTLKVI 239
Query: 243 LNLNGVAVSVTWSRGHIFD-KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVEL 301
L + + T FD KS + K+ K V+ + + K++P LNTVE+
Sbjct: 240 LE-DHEGRNKTLKLDKCFDNKSDVDDIVKSC-KGVQGKVIKMNVNELKKSRPIGLNTVEM 297
Query: 302 MRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDH 361
++ AS LG+GP M+IAE+LYT+GY+SYPRTE+T+Y F+ +L + + + +
Sbjct: 298 LKAASIKLGLGPQDTMRIAEKLYTRGYISYPRTESTKYSSYFNFDDILNNLQETNQFREK 357
Query: 362 VREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVY 421
V+ V NGI+ PR G+D GDHPPITP L+ +L+D+I F+ ++ D ++
Sbjct: 358 VQLVKQNGINIPRNGEDKGDHPPITPLNYPNE-YLNDSEKKLFDFITNTFLASIYKDSIF 416
Query: 422 TQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPD--------FKPGDLIPIQ 473
+ + + F K L PGF +++ ++E I D F GD++
Sbjct: 417 QKVNVSIQIGNYTFNGSGKVLKDPGFKKIISRYD-EDEEIKDSDLIKPTSFIEGDIVIPS 475
Query: 474 SVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV-TSGRRLVPT 532
+V+ TT PDYLTE ELISLMEK+GIGTDASIPVHI NI R YV++ TS R L PT
Sbjct: 476 MFDIVKGMTTCPDYLTEYELISLMEKNGIGTDASIPVHIQNIITREYVSLDTSKRTLRPT 535
Query: 533 SLGIVLVHGYQKIDRELVEPTMRS 556
+G+ L + +D+ L+ P +R+
Sbjct: 536 KIGLALAKTLETVDKNLITPQIRA 559
>gi|118389870|ref|XP_001027980.1| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|89309750|gb|EAS07738.1| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 916
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/538 (41%), Positives = 317/538 (58%), Gaps = 26/538 (4%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYN-NWDKVDPLELFSCPTEKREATPKLK 95
V+ + G G +FK+TSV GH+ LDF K NW++++P++LFS T LK
Sbjct: 241 VYVYEGRFKGQKTIFKVTSVTGHVYDLDFPQKLKENWNEINPVQLFSSDT--------LK 292
Query: 96 LPA------FLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
+P+ L +EA++C +L+LWLD DKEGENICFEV + + ++ + V R R
Sbjct: 293 IPSKHNIVRHLESEARNCSYLLLWLDNDKEGENICFEVKQICEKVMCFKGDNVQQVLRTR 352
Query: 148 FSAITDKDI-KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDAS 206
FS++T +DI KA PN+ E+++VDAR+ +DL+IG +FTRYQT FF+ KY DL+
Sbjct: 353 FSSLTKQDIIKAFNGTTDPPNVNESKAVDARRIIDLKIGASFTRYQTLFFRNKYPDLNKR 412
Query: 207 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL--NLNGVAVSVTWSRGHIFDKST 264
IS+GPCQTPTLGFCVER D+I+ F P + + LTL + N + + K
Sbjct: 413 TISFGPCQTPTLGFCVEREDQIKKFIPSLLYKVKLTLQGSDNKTQMLAYSEQKETLSKEK 472
Query: 265 CNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY 324
F++++ EKH+ +V V S T + P LNTVE+++ ASS L M P M AE LY
Sbjct: 473 AQYIFQSIKLEKHIQIVSVSSETLVEECPVGLNTVEMLKAASSSLNMSPQQTMDAAENLY 532
Query: 325 TQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPP 384
+G+++YPRTE+T Y +F+ VL + ++G + +L++G P+KG D DHPP
Sbjct: 533 LKGFITYPRTESTAYSSSFNFKKVLSSLQQDIEYGKFAQNLLNDGYIIPQKGNDTEDHPP 592
Query: 385 ITPTKLATRTQLDG----DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
ITPT R + +G +LYDYI +HFI +L D Y + V + F EA
Sbjct: 593 ITPTSNYPRPENEGLISPQEKQLYDYISKHFIASLYDDYEYKKLNITCQVKNYQFISEAI 652
Query: 441 YLLHPGFTGVMTWSAMKNESIP-DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
+ G+T V+ + + I D K I+++ + E ++PP YL+ESELI LM K
Sbjct: 653 RVEKQGYTKVIKSTQLDQNIIQIDVKQSSKFQIKNISIEEEYSSPPRYLSESELIDLMSK 712
Query: 500 HGIGTDASIPVHINNICQRNYVTV-TSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
+ IGTDASIP HI NI R YV + R L+PT LG ++ GY+KID ELV P +R+
Sbjct: 713 NSIGTDASIPTHIQNIVDRKYVEIDQKNRTLIPTQLGRSIIDGYRKIDEELVSPQIRA 770
>gi|341886419|gb|EGT42354.1| hypothetical protein CAEBREN_30446, partial [Caenorhabditis
brenneri]
Length = 671
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/370 (55%), Positives = 248/370 (67%), Gaps = 4/370 (1%)
Query: 195 FFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW 254
FFQGKYGDLD+++ISYGPCQTPTLGFCV RHD+I FKPE YW+L T + + S W
Sbjct: 1 FFQGKYGDLDSNVISYGPCQTPTLGFCVTRHDQIVQFKPEAYWVLKTTFSCDSQTFSPEW 60
Query: 255 SRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPH 314
RG IFD +F ++K V DV K +P ALNTVELMRVASS LGM P
Sbjct: 61 QRGRIFDAEIARLFVDRIKKSHSGVVTDVSKKEARKERPCALNTVELMRVASSSLGMSPS 120
Query: 315 HAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPR 374
M +AE LYTQGY+SYPRTETT YP NFDL L+ WG V +VL+ GI +P+
Sbjct: 121 TTMHVAESLYTQGYISYPRTETTAYPANFDLNGTLKILSGDRKWGSVVSQVLAEGIKRPK 180
Query: 375 KGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM 434
G D GDHPPITP + A L GD R+Y+Y+ +HF+ TL VY K + DE
Sbjct: 181 SGVDKGDHPPITPMR-ANTGGLSGDMARIYEYVSQHFVATLMKQCVYEVTTVKMACGDEQ 239
Query: 435 FTMEAKYLLHPGFTGVMTWSAMKNE-SIPDF--KPGDLIPIQSVKMVERKTTPPDYLTES 491
FT++ K ++ PGFT VM W ++++E S+P + G I +Q +++ R+TTPP YLTE+
Sbjct: 240 FTIQGKNVIDPGFTAVMPWLSVEDECSVPKSLQQVGAKIELQDAQILARETTPPGYLTEA 299
Query: 492 ELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVE 551
ELI+LMEKHGIGTDASIPVHIN I QRNYVTV SGRRLVPT LG LV GY K+D ELV
Sbjct: 300 ELITLMEKHGIGTDASIPVHINTITQRNYVTVESGRRLVPTRLGQCLVRGYWKVDPELVL 359
Query: 552 PTMRSAYRVQ 561
PTMR+ Q
Sbjct: 360 PTMRAELEEQ 369
>gi|4263718|gb|AAD15404.1| putative DNA topoisomerase III beta [Arabidopsis thaliana]
Length = 836
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/532 (41%), Positives = 302/532 (56%), Gaps = 76/532 (14%)
Query: 33 GACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP 92
G+ VHE+ G G +++TSV GH+ +DF KY NW +DP +LF P K+E+ P
Sbjct: 64 GSTEVHEFDGMFRGFKAHYRVTSVIGHVFSVDFPEKYQNWATIDPQDLFDAPIIKKESNP 123
Query: 93 KLKL-------PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWR 145
K+ + L+NEA+ C ++VLWLDCD+EGENICFEV+E+ + +S + V+R
Sbjct: 124 KVNIFKSQAHICRHLSNEARGCSYMVLWLDCDREGENICFEVIESTGFDMK-DSKRKVYR 182
Query: 146 ARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDA 205
ARFS++T+KDI AM NLV+PN EA +VDARQE+DL+I L
Sbjct: 183 ARFSSVTEKDISKAMDNLVEPNRDEALAVDARQEIDLKI------------------LLN 224
Query: 206 SLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTC 265
YGPCQTPTLGFCV+R+ I TFKPE +W L + +G + + W R +FD
Sbjct: 225 VYFRYGPCQTPTLGFCVQRYMHINTFKPEKFWALRPYIRKDGYELQLEWERRRLFDLEAA 284
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY- 324
VF K V + + V+DV + K +P LNTV L++ + R++
Sbjct: 285 TVFQKLVVEGRTAKVMDVSEKQEVKGRPAGLNTVNLLKCS----------------RVWA 328
Query: 325 TQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPP 384
+ GY S +++ ++ G D GDHPP
Sbjct: 329 SDGYASCRAIVYSRFHQS---------------------------------GTDAGDHPP 355
Query: 385 ITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLH 444
ITP + AT + GDAWRLY Y+ +HF+GT+ + Y + + S+ E F + +
Sbjct: 356 ITPMRAATEVMVGGDAWRLYQYVCQHFLGTVSPNCKYIRTKVELSIGGETFHCTGQRVTE 415
Query: 445 PGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGT 504
GFT +M WSA+ + +P F G+ I + V++ E T PPDYLTESELISLMEKHGIGT
Sbjct: 416 KGFTAIMPWSAVDEKKLPSFLKGERIEVLRVELYEGNTAPPDYLTESELISLMEKHGIGT 475
Query: 505 DASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
DASI VHINNI +RNYV V SGR++VPT+LGI L+ GYQ ID +L P +RS
Sbjct: 476 DASIAVHINNIGERNYVQVQSGRKMVPTALGITLIRGYQCIDPDLCLPDIRS 527
>gi|407034342|gb|EKE37171.1| DNA topoisomerase domain containing protein [Entamoeba nuttalli
P19]
Length = 840
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 223/544 (40%), Positives = 315/544 (57%), Gaps = 18/544 (3%)
Query: 25 LTPLQRMNG---ACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELF 81
L P+ G +C VHE+ G + KMTSV GH+ +F + NW VDP +LF
Sbjct: 22 LGPIHTRKGIAPSCPVHEFNCKFKGKITKAKMTSVAGHVYTCEFERAFQNWS-VDPRDLF 80
Query: 82 SCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPK 141
+C K EA PK ++PA L NEA C+ LVLWLDCD+EGENICFEVM+ +
Sbjct: 81 NCKVIKVEANPKTRIPAHLRNEANGCDGLVLWLDCDREGENICFEVMDNTVSYMTKTCK- 139
Query: 142 TVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG 201
++RA FS+IT KDI A +L P+ A +VD RQE+DLR+G AFTR QTKF + ++
Sbjct: 140 -IYRALFSSITKKDIIEAFNHLGHPDDRLAEAVDCRQEIDLRVGVAFTRLQTKFLKERFP 198
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFD 261
L SLIS+GPCQTPTLGFCV+R +I F +P++ L + + + H +
Sbjct: 199 KLGDSLISFGPCQTPTLGFCVDRQKEIDNFVSKPFYTLKVIIEDHEGRNKTLKLDKHFDN 258
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
KS K+ K V+ + + K++P LNTVE+++VAS LG+GP M IAE
Sbjct: 259 KSEVEDIVKSC-KGIQGKVIKMNVNELKKSRPVGLNTVEMLKVASVKLGLGPQETMSIAE 317
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD 381
+LYT+GY+SYPRTE+T+Y +F+ +L + + + + V+ + NGI+ P G+D GD
Sbjct: 318 KLYTRGYISYPRTESTKYSSHFNFTDILNNLQQTNQFREKVQLIKQNGINIPYNGEDKGD 377
Query: 382 HPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKY 441
HPPITP L+ RL+D+I F+ ++ D + + + + F K
Sbjct: 378 HPPITPLNYPNE-YLNDSEKRLFDFITNTFLASIYKDSTFQRVSVSVQIGNYTFNGSGKV 436
Query: 442 LLHPGFTGVMTWSAMKNESIPD--------FKPGDLIPIQSVKMVERKTTPPDYLTESEL 493
L PGF + T ++E + D F G+++ +V+ T PDYLTE EL
Sbjct: 437 LKDPGFMKI-TNHYDEDEELKDSDLIKPTSFIEGNIVIPSMFDIVKGMTKCPDYLTEYEL 495
Query: 494 ISLMEKHGIGTDASIPVHINNICQRNYVTV-TSGRRLVPTSLGIVLVHGYQKIDRELVEP 552
ISLMEK+GIGTDASIPVHI NI R YV++ TS R L PT +G+ L + +D+ L+ P
Sbjct: 496 ISLMEKNGIGTDASIPVHIQNIISREYVSLDTSKRTLRPTKIGLALARTLETVDKNLITP 555
Query: 553 TMRS 556
+R+
Sbjct: 556 QIRA 559
>gi|323456344|gb|EGB12211.1| hypothetical protein AURANDRAFT_19616, partial [Aureococcus
anophagefferens]
Length = 696
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 225/533 (42%), Positives = 309/533 (57%), Gaps = 11/533 (2%)
Query: 32 NGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREAT 91
G+ HE+ G G +++TSV GH LDF Y +WD DP EL+ P + +
Sbjct: 30 GGSPRTHEFRGRFGGASCEYRVTSVLGHCFNLDFAPAYRDWDGCDPSELWDAPVVRVPSN 89
Query: 92 PKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAI 151
+ L AKDC+ LVL+LDCD+EGE I F+VM+ + ++ + TV RA+FSA+
Sbjct: 90 GSVLR--NLRETAKDCDALVLFLDCDREGEAIAFQVMDVTQSELRPGA--TVHRAKFSAV 145
Query: 152 TDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYG 211
T DI+ AM L +P+ + +V ARQELDLR+G AFTR+ T+ FQ KY LDA +SYG
Sbjct: 146 TPADIEKAMATLGEPDERLSEAVIARQELDLRVGVAFTRFTTRHFQSKYAGLDARTLSYG 205
Query: 212 PCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKA 271
PCQTPTLGF V R D+I TF+PEPYW D L ++G TW+RG FD+S +
Sbjct: 206 PCQTPTLGFVVRREDEIATFEPEPYWFPDAALEVDGAFADATWARGRCFDRSVAAALCRG 265
Query: 272 VEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSY 331
TVV+ + T +K P NTV+L++ AS L + P AM+ AE LY G++SY
Sbjct: 266 AAAAGVATVVESTAGTSTKAPPLPFNTVDLLKAASRVLRLSPAMAMKHAEHLYLDGFLSY 325
Query: 332 PRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGI-SKPRKGKDVGDHPPITPTKL 390
PRTET ++P + DL A + QQ WG H ++L +P++G D GDHPPITPT
Sbjct: 326 PRTETNKFPPSMDLRAAIEQQAGDARWGAHAADLLERSAWRRPKRGLDAGDHPPITPTAP 385
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
A L+G A LYD + R F+ ++ D Y + +A E F +E + L+ PGF V
Sbjct: 386 APPGVLNGKAAALYDLVTRRFLASVSEDAAYADQRVAVDLAGERFVVERRALVAPGFLDV 445
Query: 451 MTWSAMKNESIPDFKPGDLI---PIQSVKMVERKTT--PPDYLTESELISLMEKHGIGTD 505
+ + P F + P R+ T PP+ L+E++ ++LMEKHGIGTD
Sbjct: 446 LRPHRDDDAGPPLFLELPAVGARPRAKCAAAPREATTRPPERLSEADCVALMEKHGIGTD 505
Query: 506 ASIPVHINNICQRNYVTVTS-GRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
ASIP HI N+C+R YV V RRL PT LG V+ G+ ++D LV P +R+A
Sbjct: 506 ASIPSHIENVCKRLYVAVDGKSRRLRPTELGTVVCRGFLRVDASLVLPEVRAA 558
>gi|440291485|gb|ELP84754.1| DNA topoisomerase 3-beta-1, putative [Entamoeba invadens IP1]
Length = 853
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 221/528 (41%), Positives = 311/528 (58%), Gaps = 14/528 (2%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
VHE++ G KMT+V GH+ +F + + W VDP LFSC +K EA PK +
Sbjct: 35 VHEFMCNFRGRPQKAKMTAVAGHVYTCEFEADFQKWS-VDPEALFSCKVKKEEANPKTHI 93
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
PA L NEAK C +VLWLDCD+EGENICFEV++ + ++RA FS+IT +I
Sbjct: 94 PAHLKNEAKGCSAIVLWLDCDREGENICFEVLDNTVDYMQKGC--RIYRAIFSSITKNEI 151
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTP 216
A NL P+ A +VDARQE+DLR+G AFTR QT F + K+ + +L+S+GPCQTP
Sbjct: 152 VKAFNNLGSPDPRLAEAVDARQEIDLRVGAAFTRLQTTFLKEKFPRMGDALVSFGPCQTP 211
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTLN-LNGVAVSVTWSRGHIFDKSTCNVFFKAVEKE 275
TLGFCV+R+ I F P+ Y+++ + +N L+G + + DK+ + +
Sbjct: 212 TLGFCVQRYKDILNFVPKAYYIVKVNVNDLSGRSKKLKL-ENRFDDKAKADAVLEECRSC 270
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
+ V + + K++P LNTVE+++ AS LGM P M IAE+LYTQGY+SYPRTE
Sbjct: 271 SGI-VKKMNVTESRKSRPTGLNTVEMLKGASLRLGMSPSDTMHIAEKLYTQGYISYPRTE 329
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQ 395
+T++ ++F ++L + SS + + V+ V +NGI+ P+ G+D GDHPPITP
Sbjct: 330 STKFSQHFGFDSILAELGSSTQFAEKVQLVRANGINVPKGGEDKGDHPPITPLTYPQFAL 389
Query: 396 LDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT--- 452
DG+ RLY YI F+ +L D V+ + F+ K L PGF + T
Sbjct: 390 GDGE-MRLYQYICNSFLASLYKDAVFQKASVSIEFGKYSFSGSGKILKDPGFLKMTTKLD 448
Query: 453 --WSAMKNESIPD-FKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
+ +PD FK + I ++ + TT PDYLTE ELI+LMEK+GIGTDASIP
Sbjct: 449 DDDDEEDDAIMPDSFKLNEKIEGGKFEINKGMTTCPDYLTEYELITLMEKNGIGTDASIP 508
Query: 510 VHINNICQRNYVTVTSGRR-LVPTSLGIVLVHGYQKIDRELVEPTMRS 556
VHI NI R YVT+ +R L PT G+ L Y I+++LV P +R+
Sbjct: 509 VHIGNIINRGYVTLNGAKRTLQPTKHGLALTKTYDAIEKKLVSPEIRA 556
>gi|67473767|ref|XP_652633.1| DNA topoisomerase III [Entamoeba histolytica HM-1:IMSS]
gi|56469504|gb|EAL47247.1| DNA topoisomerase III, putative [Entamoeba histolytica HM-1:IMSS]
gi|449707795|gb|EMD47388.1| DNA topoisomerasebeta-1, putative [Entamoeba histolytica KU27]
Length = 840
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 226/545 (41%), Positives = 315/545 (57%), Gaps = 20/545 (3%)
Query: 25 LTPLQRMNG---ACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELF 81
L P+ G +C VHE+ G + KMTSV GH+ +F + NW VDP +LF
Sbjct: 22 LGPIHTRKGIAPSCLVHEFNCKFKGKITKAKMTSVAGHVYTCEFERAFQNWS-VDPRDLF 80
Query: 82 SCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPK 141
SC K EA PK ++PA L NEA C LVLWLDCD+EGENICFEVM+ +
Sbjct: 81 SCNVIKVEANPKTRIPAHLRNEANGCNGLVLWLDCDREGENICFEVMDNTVSYMTKTCK- 139
Query: 142 TVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG 201
++RA FS+IT KDI A +L P+ A +VD RQE+DLR+G AFTR QTKF + ++
Sbjct: 140 -IYRALFSSITKKDIIEAFNHLGHPDDRLAEAVDCRQEIDLRVGVAFTRLQTKFLKERFP 198
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFD 261
L SLIS+GPCQTPTLGFCV+R +I F +P++ L + + + + T FD
Sbjct: 199 KLGDSLISFGPCQTPTLGFCVDRQKEIDNFVSKPFYTLKVIIE-DHEGRNKTLKLDKRFD 257
Query: 262 -KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
KS K+ K V+ + + K++P LNTVE+++VAS LG+GP M IA
Sbjct: 258 NKSEVEDIVKSC-KGVQGKVIKMSVNELKKSRPVGLNTVEMLKVASVKLGLGPQDTMSIA 316
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG 380
E+LYT+GY+SYPRTE+T+Y F+ +L + + + + V+ + NGI+ P G+D G
Sbjct: 317 EKLYTRGYISYPRTESTKYSSYFNFTDILNNLQQTNQFREKVQLIKQNGINIPYNGEDKG 376
Query: 381 DHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
DHPPITP L+ +L+D+I F+ ++ D + + + + F K
Sbjct: 377 DHPPITPLNYPNE-YLNDSEKKLFDFITNTFLASIYKDSTFQKVSVSVQIGNYTFNGSGK 435
Query: 441 YLLHPGFTGVMTWSAMKNESIPD---FKPGDLIPIQSV-----KMVERKTTPPDYLTESE 492
L PGF + T +++ + D KP I +V +V+ T PDYLTE E
Sbjct: 436 ILKDPGFMKI-TNHYDEDDELKDSDLIKPTSFIEGNTVIPSMFDIVKGMTKCPDYLTEYE 494
Query: 493 LISLMEKHGIGTDASIPVHINNICQRNYVTV-TSGRRLVPTSLGIVLVHGYQKIDRELVE 551
LISLMEK+GIGTDASIPVHI NI R YV++ TS R L PT +G+ L + +D+ L+
Sbjct: 495 LISLMEKNGIGTDASIPVHIQNIISREYVSLDTSKRTLRPTKIGLALARTLETVDKNLIT 554
Query: 552 PTMRS 556
P +R+
Sbjct: 555 PQIRA 559
>gi|449678511|ref|XP_002155556.2| PREDICTED: DNA topoisomerase 3-beta-1-like [Hydra magnipapillata]
Length = 843
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 225/573 (39%), Positives = 316/573 (55%), Gaps = 54/573 (9%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR- 88
R N +W GP L +TSV GHI GL F + + D +LF EK+
Sbjct: 70 RANQIFEFIKWFGPAQQKCKLM-VTSVVGHIFGLGFAGRPDR----DISKLFDASVEKQL 124
Query: 89 -EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRAR 147
++T KL + L ++ E+L LWLDCD+EGENI FEV+ + I ++ V+RAR
Sbjct: 125 ADSTKKLNIVEHLQELGQESEYLFLWLDCDREGENIGFEVISLTQQWIPYDN---VYRAR 181
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFF----QGKYGDL 203
FSA+T ++ A N V+P+ + A SVDARQELDL+IG AF+R T+ F + K+
Sbjct: 182 FSALTKTELSQAYDNPVRPDKYAAMSVDARQELDLKIGVAFSRLMTRAFLDMAKEKFRLK 241
Query: 204 DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKS 263
D ++SYGPCQTPTL FCV+RH +I+ FK P++++ + +N+ G +++ W + +
Sbjct: 242 DQKVVSYGPCQTPTLWFCVQRHKEIQNFKSTPFYVVSVVVNIQGQNITLKWVNDTVKNAE 301
Query: 264 TCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERL 323
+++ +VDV+ K KP LNTV L++ S G G+ P AM IAE L
Sbjct: 302 DLRQMESIIQRNPVAHIVDVKEDKKVVYKPIGLNTVTLLKSCSKGFGISPTQAMNIAEHL 361
Query: 324 YTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKP-RKGKDVGDH 382
YT GY+SYPRTETT+YP FDLV L +Q ++P+WG +L +G P +KG DVGDH
Sbjct: 362 YTSGYISYPRTETTRYPPTFDLVGTLEEQVNNPNWGRIAAYILESGRMNPSQKGFDVGDH 421
Query: 383 PPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYL 442
PPITP + A R + + WR+YDY+ RHFIGTL ++ Y +K V F +
Sbjct: 422 PPITPMRSANRDEFKPNEWRIYDYVTRHFIGTLHDNMEYIEKKMLVDVNGFQFEYVWHEI 481
Query: 443 LHPGFTGVMTW--SAMK-NES-IP--DFKPGDLIPIQSVKMVERKTTPPDYLTESELISL 496
GF M W +K NES +P + G + + E+ T PPDYL ESELISL
Sbjct: 482 TDKGFMWAMPWKLKGLKLNESYMPPINMLQGLTTGVLNFLKDEKYTQPPDYLQESELISL 541
Query: 497 MEKHGIGTDASIPVHINNICQRNYVTVTS------------------------------- 525
M+KHGIGTDASIP HI N+ R+YV V
Sbjct: 542 MDKHGIGTDASIPTHIKNVQDRHYVDVCGPSEGGQRGQLIQENKFFGKNSRGKGQKQQPK 601
Query: 526 --GRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
R +VP G+ + ++ +D+EL EP++R+
Sbjct: 602 ALSRHMVPRGFGLAFLSCFEDLDKELCEPSIRA 634
>gi|308805316|ref|XP_003079970.1| myosin class 11-1 (ISS) [Ostreococcus tauri]
gi|116058427|emb|CAL53616.1| myosin class 11-1 (ISS) [Ostreococcus tauri]
Length = 2117
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/438 (45%), Positives = 275/438 (62%), Gaps = 19/438 (4%)
Query: 18 RPSLISLLTPL--------QRMNGACSVHEWVGPLFGDLV--LFKMTSVCGHIMGLDFTS 67
+PSL +L+ R A VHE+ G G + +++TSV GH+ +DF
Sbjct: 1595 KPSLAALIAGFLAPGGAFTTRKGFAGDVHEFTGRGLGTMRSRAWRVTSVKGHVASVDFPE 1654
Query: 68 KYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEV 127
++ +W+ DP ELF+ PT KR K+ L +EAK L+LWLDCD+EGENICFEV
Sbjct: 1655 RFQSWESCDPGELFAAPTVKR---ADGKMVRHLESEAKGAMTLILWLDCDREGENICFEV 1711
Query: 128 MEAVRHQININS--PKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIG 185
+EA + + + + RA+FSA+T ++ AM +L + N EA +VDARQELDL++G
Sbjct: 1712 IEACAPSMRTSGGGEREILRAKFSAVTKDSVENAMKSLGRANRNEALAVDARQELDLKMG 1771
Query: 186 CAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNL 245
AFTR+QT++F KY LDA ++SYGPCQTPTLGFCV+RH +I PEPYW+L+
Sbjct: 1772 VAFTRFQTQYFLNKYDRLDARVVSYGPCQTPTLGFCVQRHLEIVRHVPEPYWVLEALFAD 1831
Query: 246 --NGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMR 303
G V+ W+R +FD+ F + V K VV V+S + + +P LNTVE+++
Sbjct: 1832 ADRGEEVAPKWARSRLFDEEAARAFLQLVNDAKTFDVVSVESKAEKRPRPSGLNTVEMLK 1891
Query: 304 VASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVR 363
AS+GLGMG H AMQ+AERLY G++SYPRTE+T YP F L LR Q S P WG+ VR
Sbjct: 1892 AASAGLGMGAHRAMQVAERLYMAGHISYPRTESTAYPSGFALKETLRIQTSHPTWGEFVR 1951
Query: 364 EVLSNGI-SKPRKGKDVGDHPPITPTKLATRTQL-DGDAWRLYDYIVRHFIGTLCGDLVY 421
++ G+ + PR+G D GDHPPITP + +T + G+AWRLYD+I RHFI T+ D Y
Sbjct: 1952 GLVEEGLMTPPRRGVDAGDHPPITPMRASTEGDVGGGEAWRLYDFISRHFIATVSPDCEY 2011
Query: 422 TQKVAKFSVADEMFTMEA 439
+ A +V DE+ +++A
Sbjct: 2012 ETQTAFLTVEDEVCSVDA 2029
>gi|440913082|gb|ELR62586.1| DNA topoisomerase 3-alpha [Bos grunniens mutus]
Length = 1002
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 220/559 (39%), Positives = 316/559 (56%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGAC---SVHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L G V MTSV GH
Sbjct: 33 VRKILCVAEKNDAAKGIADLLSGGRMRRREGLSRFNKIYEFDYHLCGQNVTMVMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L EA+ C+ LV+W DCD+E
Sbjct: 93 LLAHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLEREAQQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FEV+ + + V RARFS IT + ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEVIHVCK---AVKPSLQVLRARFSEITTRAVRTACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQKIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHK 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V +W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IRVTHDHRDGVVEFSWKRHRLFNHTACLVLYQMCMEDPRATVVEVRSKAKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P++ DL A++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLDLAALVEQQTPDPRW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G R +L G PR G K HPPI PTK L GD RLY+ IVRHF+
Sbjct: 390 GAFARNILERGGPTPRNGNKSDQAHPPIHPTKYT--DSLQGDEQRLYELIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++++P ++ G +V+M
Sbjct: 448 DAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDRWSDKTLPVYEQGTCFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T +R +P LG+
Sbjct: 508 VDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>gi|399216452|emb|CCF73140.1| unnamed protein product [Babesia microti strain RI]
Length = 810
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 216/514 (42%), Positives = 298/514 (57%), Gaps = 50/514 (9%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+T GHI L F SKYNNW+ DPLELFS + A + L++ AK CE L+L
Sbjct: 50 ITCTTGHIFNLSFHSKYNNWENTDPLELFSADVIQTYANSD-AIANHLSSIAKSCESLIL 108
Query: 113 WLDCDKEGENICFEVMEAVRHQININSP---KTVWRARFSAITDKDIKAAMWNLVKPNIF 169
LD D+EGENICFEV+ V + K ++RARFS++ DI A NL PN
Sbjct: 109 ALDNDREGENICFEVISIVYKHLKSECKGLGKNIFRARFSSLVKCDIINAFKNLGMPNKN 168
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
E+ +V ARQE+DL++GCAFTR+QT FQ K+G+L+ LISYGPCQTPTL FCVER +I+
Sbjct: 169 ESDAVLARQEIDLKLGCAFTRFQTLSFQDKFGNLNTKLISYGPCQTPTLFFCVERFKQIK 228
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKS 289
+F+P+ Y+ + KE+ + V SS K+
Sbjct: 229 SFQPQTYYRV----------------------------------KEEVFVLSAVYSSVKT 254
Query: 290 KTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL 349
+P ALNTV L+++AS L +GPHHA+ +AE+LY GY+SYPRTET YP+NFD VL
Sbjct: 255 IARPTALNTVNLLKMASQQLHLGPHHALSVAEKLYLSGYISYPRTETMTYPKNFDTEGVL 314
Query: 350 RQQESSPDWGDHVREVLSN--------GISKPRKGKDVGDHPPITPTKLATRTQLDGDAW 401
S+ + R++ + +++ +GKD GDHPPITP + + L D
Sbjct: 315 NMLRSA----NFPRDIFTGSKTDSIKFNLNQICRGKDAGDHPPITPVSVPNPSYLSSDEL 370
Query: 402 RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI 461
+Y IVR+F+ ++ D Y ++ F+ A E F ++ PGFT + S++ S
Sbjct: 371 NIYLLIVRNFLESISVDCKYKEEKYSFTAASETFIYTCTKVVEPGFTSISNKSSLTESSP 430
Query: 462 PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
GD+ + ++ +TTPP L+ES+L+ LMEK+GIGTDAS+ HINNIC R YV
Sbjct: 431 ITASAGDIYRLCGCEIRSAQTTPPSLLSESDLLELMEKNGIGTDASMATHINNICLRGYV 490
Query: 522 TVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMR 555
+ RRL PT LG LV+GY ++D ELV PT+R
Sbjct: 491 KIVGNRRLEPTKLGQSLVYGYLQVDPELVLPTVR 524
>gi|351707720|gb|EHB10639.1| DNA topoisomerase 3-alpha [Heterocephalus glaber]
Length = 991
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 217/559 (38%), Positives = 317/559 (56%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYYLYGQNVTMIMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMRFRKWHSCNPLVLFEAEIEKYCPENFIDIKKTLERETRQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCK---AVKPSLQVLRARFSEITPGAVRTACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQKVFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHR 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + AV W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IKVTHDHEDGAVDFNWKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P + +L+A++ QQ PDW
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLMALVEQQTQDPDW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK + L GD RLY+ IVRHF+
Sbjct: 390 GAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYT--SNLQGDEQRLYELIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++ +P ++ G +++M
Sbjct: 448 DAQGQETTVEIDIAQERFVARGLMILARNYLDVYPYDRWSDKLLPVYEEGSQFQPSTIEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
++ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +TS +R +P LG+
Sbjct: 508 LDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>gi|301775497|ref|XP_002923167.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha-like
[Ailuropoda melanoleuca]
Length = 959
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 217/559 (38%), Positives = 316/559 (56%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKILCVAEKNDAAKGIADLLSNGRMRRREGFSKFNKIYEFDYRLYGQNVTMIMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMQFRKWHSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ R + V RARFS IT + ++AA NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCR---AVKPSLPVLRARFSEITPRAVRAACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHK 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IKVTHDHKDGVVEFNWKRHRLFNHTACLVLYQLCMEDPRATVVEVRSKAKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P++ +L ++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLNLTVLVEQQTQDPRW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK L GD RLY++IVRHF+
Sbjct: 390 GAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYT--GSLQGDEQRLYEFIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++++P ++ G +V M
Sbjct: 448 DAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDHWSDKTLPVYERGACFQPSTVAM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T+ +R +P LG+
Sbjct: 508 VDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTADKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>gi|73956193|ref|XP_546656.2| PREDICTED: DNA topoisomerase 3-alpha [Canis lupus familiaris]
Length = 989
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 217/559 (38%), Positives = 318/559 (56%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKILCVAEKNDAAKGIADLLSNGRMRRREGFSKFNKIYEFDYHLYGQNVTMVMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVGIKKTLQRETQQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ R + V RARFS IT + ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCR---AVKPNLQVLRARFSEITPRAVRVACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQKIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHK 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V+S +KSK +PQAL+T
Sbjct: 270 IKVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCMEDPTATVVEVRSKSKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P++ DL ++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLDLTVLVEQQTPDPRW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK + L GD RLY++IVRHF+
Sbjct: 390 GAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYT--SSLQGDEQRLYEFIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++++P ++ G +V+M
Sbjct: 448 DAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDRWSDKTLPVYERGSHFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T+ +R +P LG+
Sbjct: 508 VDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTADKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>gi|118151044|ref|NP_001071443.1| DNA topoisomerase 3-alpha [Bos taurus]
gi|117306502|gb|AAI26548.1| Topoisomerase (DNA) III alpha [Bos taurus]
Length = 1002
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 219/559 (39%), Positives = 315/559 (56%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGAC---SVHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L G V MTSV GH
Sbjct: 33 VRKILCVAEKNDAAKGIADLLSGGRMRRREGLSRFNKIYEFDYHLCGQNVTMVMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L EA+ C+ LV+W DCD+E
Sbjct: 93 LLAHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLEREAQQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FEV+ + + V RARFS IT + ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEVIHVCK---AVKPSLQVLRARFSEITTRAVRTACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQKIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHK 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V +W R +F+ + C V ++ ++ VV+V+S KSK +PQAL+T
Sbjct: 270 IRVTHDHRDGVVEFSWKRHRLFNHTACLVLYQMCMEDPRAMVVEVRSKAKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P++ DL A++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLDLAALVEQQTPDPRW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G R +L G PR G K HPPI PTK L GD RLY+ IVRHF+
Sbjct: 390 GAFARNILERGGPTPRNGNKSDQAHPPIHPTKYT--DSLQGDEQRLYELIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++++P ++ G +V+M
Sbjct: 448 DAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDRWSDKTLPVYEQGTCFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T +R +P LG+
Sbjct: 508 VDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>gi|296476590|tpg|DAA18705.1| TPA: topoisomerase (DNA) III alpha [Bos taurus]
Length = 1002
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 219/559 (39%), Positives = 315/559 (56%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGAC---SVHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L G V MTSV GH
Sbjct: 33 VRKILCVAEKNDAAKGIADLLSGGRMRRREGLSRFNKIYEFDYHLCGQNVTMVMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L EA+ C+ LV+W DCD+E
Sbjct: 93 LLAHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLEREAQQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FEV+ + + V RARFS IT + ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEVIHVCK---AVKPSLQVLRARFSEITTRAVRTACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQKIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHK 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V +W R +F+ + C V ++ ++ VV+V+S KSK +PQAL+T
Sbjct: 270 IRVTHDHRDGVVEFSWKRHRLFNHTACLVLYQMCMEDPRAMVVEVRSKAKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P++ DL A++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLDLAALVEQQTPDPRW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G R +L G PR G K HPPI PTK L GD RLY+ IVRHF+
Sbjct: 390 GAFARNILERGGPTPRNGNKSDQAHPPIHPTKYT--DSLQGDEQRLYELIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++++P ++ G +V+M
Sbjct: 448 DAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDRWSDKTLPVYEQGTCFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T +R +P LG+
Sbjct: 508 VDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>gi|338711250|ref|XP_001918241.2| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha-like
[Equus caballus]
Length = 987
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 209/522 (40%), Positives = 301/522 (57%), Gaps = 7/522 (1%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ L+G V MTSV GH++ DF ++ W +PL LF EK + +
Sbjct: 50 IYEFDYHLYGQNVTMIMTSVSGHLLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDI 109
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L E + C+ LV+W DCD+EGENI FE++ + + V RARFS IT + +
Sbjct: 110 KKTLERETRQCQALVIWTDCDREGENIGFEIIHVCK---AVKPSLQVLRARFSEITPRAV 166
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQT 215
+ A NL +P+ + +VD RQELDLRIG AFTR+QT Q + + L LISYG CQ
Sbjct: 167 RTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQKIFPEVLAEQLISYGSCQF 226
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKE 275
PTLGF VER I+ F PE + + +T + V W R +F+ + C V ++ ++
Sbjct: 227 PTLGFVVERFKAIQAFVPEIFHKIKVTHDHKDGIVEFGWKRHRLFNHTACLVLYQLCMED 286
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
TVV+V+S KSK +PQAL+TVEL ++AS L + M+IAE+LYTQGY+SYPRTE
Sbjct: 287 PRATVVEVRSKAKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTE 346
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRT 394
T +P + +L A++ QQ P WG + +L G PR G K HPPI PTK +
Sbjct: 347 TNIFPRDLNLTALVEQQTPDPRWGAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYT--S 404
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
L GD RLY++IVRHF+ D + + +A E F +L + V +
Sbjct: 405 NLQGDEQRLYEFIVRHFLACCSQDAQGQETTVEIDIAQERFVAHGLVILARNYLDVYPYD 464
Query: 455 AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINN 514
N+++P ++ G +V+MV+ +T+PP LTE++LI+LMEKHGIGTDA+ HI
Sbjct: 465 HWSNKTLPVYERGFCFQPSTVEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIET 524
Query: 515 ICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
I R YV +T+ +R +P LG+ LV GY + E+ +P +R+
Sbjct: 525 IKARMYVGLTADKRFLPGHLGMGLVEGYDSMGYEMSKPDLRA 566
>gi|383854782|ref|XP_003702899.1| PREDICTED: DNA topoisomerase 3-alpha-like [Megachile rotundata]
Length = 1018
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 208/528 (39%), Positives = 305/528 (57%), Gaps = 17/528 (3%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR--EATPKL 94
++E+ ++ MTSV GH++ F S Y W PL LF P K+ E T L
Sbjct: 37 IYEFKSQVWNQNCDMIMTSVSGHLLDFQFVSAYRKWQSCHPLSLFDAPVTKQCIEQT-SL 95
Query: 95 KLPAFLANEAKDCEFLVLWLDCDKEGENICFEVME---AVRHQININSPKTVWRARFSAI 151
K+ L E K C L++W DCD+EGENI FE+++ AV+ I +V+RA+FS I
Sbjct: 96 KIKETLEREVKKCNALIIWTDCDREGENIGFEIIQVCQAVKPNI------SVYRAKFSEI 149
Query: 152 TDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKY-GDLDASLISY 210
T I A+ NL +PN +VD R +LDLRIG AFTR+QT Q + L LISY
Sbjct: 150 TQASINRALQNLCEPNKAVNDAVDVRMQLDLRIGAAFTRFQTLRLQKVFPRTLSDMLISY 209
Query: 211 GPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFK 270
G CQ PTLGF VER+ + FKPEPYW + + + ++V W+RG +F+K C VF
Sbjct: 210 GSCQFPTLGFVVERYLAVERFKPEPYWKISVKDTRDNISVDFRWARGRLFEKLPCEVFLD 269
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVS 330
++ + TV V S SK +P L+TVEL + S L + M+IAE+LYTQG++S
Sbjct: 270 MCLEQPNATVQKVTSKPTSKWRPVPLDTVELEKQGSRKLRLTAKQTMKIAEKLYTQGFIS 329
Query: 331 YPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTK 389
YPRTET +P+ +LV + QQ ++P WG+ +++L G+ PR+GK HPPI PTK
Sbjct: 330 YPRTETNIFPKELNLVPFVNQQVNNPLWGNFAQQLLEKGLH-PRQGKKSDQAHPPIHPTK 388
Query: 390 LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTG 449
A L GD ++Y+++VRHF+ L + + + V + +A E F ++ +
Sbjct: 389 CA--DNLQGDEAKVYEFVVRHFLACLSDNAIGRETVVEIDIAGEKFVANGLQIIEKNYLN 446
Query: 450 VMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
V + ++ I ++ G + S+ M++ +T+PP LTE++LISLM+K+GIGTDA+
Sbjct: 447 VYIYEKWSDKEIYAYQEGQVFRPTSIDMIQEETSPPQLLTEADLISLMDKYGIGTDATHA 506
Query: 510 VHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
HI+ I R YV + G+ L+P LGI LV GY + E+ +P +R+
Sbjct: 507 EHIDTIKSRQYVGLMDGKHLIPGKLGIGLVMGYDSMGFEMSKPKLRAG 554
>gi|410980097|ref|XP_003996416.1| PREDICTED: DNA topoisomerase 3-alpha [Felis catus]
Length = 987
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 216/559 (38%), Positives = 316/559 (56%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKILCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMIMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMQFRKWHSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ R + V RARFS IT + ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCR---AVKPSLPVLRARFSEITPRAVQTACENLTEPDSRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHK 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IKVTHDHKDGVVEFNWKRHRLFNHTACLVLYQLCMEDPRATVVEVKSKAKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P++ +L ++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLNLTVLVEQQTPDPRW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK + L GD RLY++IVRHF+
Sbjct: 390 GAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYT--SSLQGDEQRLYEFIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++++P ++ G +V+M
Sbjct: 448 DAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDRWSDKTLPVYERGSRFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T +R +P LG+
Sbjct: 508 VDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPNLRA 586
>gi|74216779|dbj|BAE37792.1| unnamed protein product [Mus musculus]
Length = 694
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 218/559 (38%), Positives = 316/559 (56%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSNGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETHHCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCK---AVKPNLRVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHK 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IKVTHDHKDGTVEFNWKRYRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P++ +LVA++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLNLVALVEQQTVDPHW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK + L GD RLY++IVRHF+
Sbjct: 390 GAFAQTILERGGPTPRNGSKSDQAHPPIHPTKYT--SGLQGDDRRLYEFIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++ +P ++ G +V+M
Sbjct: 448 DAQGQETTVEIDIAQERFVAHGLIILARNYLDVYPYDHWSDKLLPVYEQGSHFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +TS +R +P LG+
Sbjct: 508 VDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>gi|431914498|gb|ELK15748.1| DNA topoisomerase 3-alpha [Pteropus alecto]
Length = 1007
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 215/559 (38%), Positives = 317/559 (56%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMIMTSVTGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETQQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT + ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCK---AVKPTLQVLRARFSEITPRAVRMACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I++F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQKIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQSFVPEIFHK 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V S KSK +PQAL+T
Sbjct: 270 IKVTHDHRDGIVEFNWKRHRLFNHTACLVLYQLCMEDPTATVVEVSSKAKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P + +L A++ QQ P W
Sbjct: 330 VELEKLASRKLKINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTALVEQQIPDPRW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G+ PR G K HPPI PTK + L G+ RLY++IVRHF+
Sbjct: 390 GAFAQSILERGVPTPRNGNKSDQAHPPIHPTKYT--SSLQGEEQRLYEFIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++++P ++ G +V+M
Sbjct: 448 DAQGQETTVEIDIAQERFVAHGLVILARNYLDVYPYDRWSDKTLPVYERGSRFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T +R +P LG+
Sbjct: 508 VDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARTYVGLTPDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>gi|449281375|gb|EMC88455.1| DNA topoisomerase 3-alpha [Columba livia]
Length = 1016
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 215/560 (38%), Positives = 320/560 (57%), Gaps = 12/560 (2%)
Query: 4 RVKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCG 58
R++K++ +E A + LL+ ++R G ++E+ +FG V MTSV G
Sbjct: 32 RIRKVLCVAEKNDAARGIADLLSNSRMRRREGFSKFNKIYEYDYQMFGQSVTMVMTSVSG 91
Query: 59 HIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDK 118
H++ DF + W +PL LF EK L + L E + C+ LV+W DCD+
Sbjct: 92 HLLAHDFKLPFRKWHSCNPLALFDAEIEKYCPENYLDIKRTLEREVQQCQALVIWTDCDR 151
Query: 119 EGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQ 178
EGENI FE++ + + V+RARFS IT ++ A NL +P+ + +VD RQ
Sbjct: 152 EGENIGFEIIHVCK---AVKPNLQVFRARFSEITLHAVRTACENLTQPDQKTSDAVDVRQ 208
Query: 179 ELDLRIGCAFTRYQTKFFQGKYGDLDA-SLISYGPCQTPTLGFCVERHDKIRTFKPEPYW 237
ELDLRIG AFTR+QT + + D+ A LISYG CQ PTLGF VER I+ F PE ++
Sbjct: 209 ELDLRIGAAFTRFQTLRLRKIFPDILADQLISYGSCQFPTLGFVVERFKAIQAFVPEAFY 268
Query: 238 LLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALN 297
+ +T + +V W R +F+ + C V ++ ++ TVV+V S KSK +P L+
Sbjct: 269 KIKVTHDHEDGSVVFNWKRNRLFNHTACLVLYQICMEDPVATVVEVGSKPKSKWRPLPLD 328
Query: 298 TVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPD 357
TVEL ++AS L + M+IAE+LYTQG++SYPRTET +P+ +L A+++QQ P+
Sbjct: 329 TVELEKLASRKLKINAKETMRIAEKLYTQGFISYPRTETNIFPKELNLSALVQQQTQDPN 388
Query: 358 WGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLC 416
WG + +L G PR+G K HPPI PTK A L G RLY++IVRHF+
Sbjct: 389 WGAFAQRILDQGGPTPRRGTKSDQAHPPIHPTKYA--ANLQGSEQRLYEFIVRHFLACCS 446
Query: 417 GDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVK 476
D + + +A+E F + +L + V + ++ IP ++ G +V+
Sbjct: 447 QDAKGQETTVEIDIANERFIAQGLMILARNYLEVYPYEKWSDKVIPLYQKGSRFQPTTVE 506
Query: 477 MVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGI 536
MV+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T+ +R +P LG+
Sbjct: 507 MVDGETSPPLLLTEADLIALMEKHGIGTDATHAEHIETIKTRMYVGLTADQRFLPGHLGM 566
Query: 537 VLVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 567 GLVEGYDSMGYEMSKPDLRA 586
>gi|417405552|gb|JAA49485.1| Putative dna topoisomerase iii beta [Desmodus rotundus]
Length = 999
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 217/559 (38%), Positives = 316/559 (56%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMIMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMRFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FEV+ + + V RARFS IT + I+ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEVIHVCK---AVKPTLQVLRARFSEITPRAIRMACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHK 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V +W R +F+ + C V + ++ TVV+V S KSK +PQAL+T
Sbjct: 270 IKVTHDHRDGIVEFSWKRHRLFNHTACLVLYHLCMEDPMATVVEVSSKAKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P++ +L A++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNVFPKDLNLTALVEQQTPDPHW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK + L GD RLY++IVRHF+
Sbjct: 390 GSFAQSILERGGPTPRNGNKSDQAHPPIHPTKYT--SSLQGDEQRLYEFIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++++P ++ G +++M
Sbjct: 448 DAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDRWSDKTLPVYERGSRFQPSTMQM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T +R +P LG+
Sbjct: 508 VDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDAMGYEMSKPDLRA 586
>gi|405967245|gb|EKC32429.1| DNA topoisomerase 3-alpha [Crassostrea gigas]
Length = 1950
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 204/507 (40%), Positives = 298/507 (58%), Gaps = 9/507 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH++ +DF +YN W PL LF P EK+ + L E + ++L++
Sbjct: 3 MTSVSGHLLEMDFVGQYNKWYSCSPLSLFDLPIEKKCPDKFADIKRTLEREVRQSQYLII 62
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGENI EV++ + +N N P V+RARFS IT + + A NLV P+ +
Sbjct: 63 WTDCDREGENIGHEVIQVCK-AVNPNIP--VYRARFSEITPQAVARACSNLVPPDQRTSD 119
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTF 231
+VD RQELDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER+ +++ F
Sbjct: 120 AVDVRQELDLRIGAAFTRFQTMRLQKIFPEALADKLISYGSCQFPTLGFVVERYKQVQAF 179
Query: 232 KPEPYWLLDLTLNLNG-VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
PEP+W + +T + +W R +FD + C + ++ + TV++V+ KSK
Sbjct: 180 IPEPFWKIKVTHMFDEETKCEFSWKRNRLFDHNACLILYEQCVENPQATVMEVKCKPKSK 239
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
+P L+TVE+ ++AS L + M+IAE LYT+G++SYPRTET +P++ DL A+++
Sbjct: 240 WRPTPLDTVEMEKLASRKLRLSAKETMRIAENLYTKGFISYPRTETNIFPKDLDLAALVQ 299
Query: 351 QQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVR 409
+Q P+WG +L + PR G K HPPI P K L G+ RLY++IVR
Sbjct: 300 EQSRDPNWGGFASGILQDR-PNPRNGNKSDQAHPPIHPIKYTA--TLQGNDARLYEFIVR 356
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDL 469
HF+ T D + ++ADEMFT + ++ + V + ++IP ++ GD
Sbjct: 357 HFLATCSKDAQGQETTVTINIADEMFTAQGLMIIARNYLDVYPYDRWNAKTIPVYQEGDS 416
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRL 529
S+ M+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R Y+ V + R
Sbjct: 417 FQPNSIDMLFSETSPPPLLTEADLIALMEKHGIGTDATHAEHIETIKTRMYIGVNNDGRF 476
Query: 530 VPTSLGIVLVHGYQKIDRELVEPTMRS 556
VP LG+ LV GY + E+ +P +RS
Sbjct: 477 VPGQLGMGLVEGYDAMGYEMSKPHLRS 503
>gi|354467838|ref|XP_003496375.1| PREDICTED: DNA topoisomerase 3-alpha [Cricetulus griseus]
gi|344245173|gb|EGW01277.1| DNA topoisomerase 3-alpha [Cricetulus griseus]
Length = 1004
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 218/559 (38%), Positives = 318/559 (56%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSNGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMRFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETQHCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT + ++AA NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCK---AVKPNLQVLRARFSEITPRAVRAACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHR 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IKVTHDHKDGTVEFNWKRYRLFNHTACLVLYQLCMEDPTATVVEVRSKPKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P++ +LVA++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLNLVALVEQQTLDPHW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K H PI PTK + L GD RLY++IVRHF+
Sbjct: 390 GAFAQNILERGGPTPRNGNKSDQAHSPIHPTKYT--SNLQGDERRLYEFIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++ +P ++ G +V+M
Sbjct: 448 DAQGQETTVEIDIAQERFIAHGLVILARNYLDVYPYDHWSDKLLPVYEQGFSFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +TS +R +P LG+
Sbjct: 508 VDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>gi|224070273|ref|XP_002189800.1| PREDICTED: DNA topoisomerase 3-alpha [Taeniopygia guttata]
Length = 1009
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 215/560 (38%), Positives = 318/560 (56%), Gaps = 12/560 (2%)
Query: 4 RVKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCG 58
R++K++ +E A + LL+ ++R G ++E+ +FG V MTSV G
Sbjct: 32 RIRKVLCVAEKNDAARGIAELLSNSRMRRREGFSKFNKIYEYDYHMFGQNVTMVMTSVSG 91
Query: 59 HIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDK 118
H++ DF + W +PL LF EK L + L E + C+ LV+W DCD+
Sbjct: 92 HLLAHDFVMPFRKWHSCNPLALFDAEIEKYCPENYLDIKRTLEREIQQCQALVIWTDCDR 151
Query: 119 EGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQ 178
EGENI FE++ R + V+RARFS IT ++AA +L +P+ + +VD RQ
Sbjct: 152 EGENIGFEIIHVCR---AVKPNLQVFRARFSEITPHAVRAACEHLTQPDQKTSDAVDVRQ 208
Query: 179 ELDLRIGCAFTRYQTKFFQGKYGDLDA-SLISYGPCQTPTLGFCVERHDKIRTFKPEPYW 237
ELDLRIG AFTR+QT + + D+ A LISYG CQ PTLGF VER I+ F PE ++
Sbjct: 209 ELDLRIGAAFTRFQTLRLRKIFPDILADQLISYGSCQFPTLGFVVERFKAIQAFVPEAFY 268
Query: 238 LLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALN 297
+ +T + +V W R +F+ + C V ++ ++ TVVDV S KSK +P L+
Sbjct: 269 KIKVTHDHEDGSVVFNWKRNRLFNHTACLVLYQMCMEDPVATVVDVVSKPKSKWRPLPLD 328
Query: 298 TVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPD 357
TVEL ++AS L + M IAE+LYT+G++SYPRTET +P+ +L A++ QQ P+
Sbjct: 329 TVELEKLASRKLKINAKETMTIAEKLYTKGFISYPRTETNIFPKELNLSALVEQQTQDPN 388
Query: 358 WGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLC 416
WG + +L G PR G K HPPI PTK + L G+ RLY++IVRHF+
Sbjct: 389 WGGFAQRILDQGGPTPRSGTKSDQAHPPIHPTKYT--SNLQGNEQRLYEFIVRHFLACCS 446
Query: 417 GDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVK 476
D + + +A+E F + +L + V + ++ IP + G +V+
Sbjct: 447 QDAKGQETTVEIDIANEQFIAQGLMILARNYLEVYPYDKWSDKVIPLYHKGSRFQPTTVE 506
Query: 477 MVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGI 536
MV+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T+ +R +P LG+
Sbjct: 507 MVDGETSPPLLLTEADLIALMEKHGIGTDATHAEHIETIKTRMYVGLTADQRFLPGQLGM 566
Query: 537 VLVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 567 GLVEGYDSMGYEMSKPDLRA 586
>gi|74186931|dbj|BAE20515.1| unnamed protein product [Mus musculus]
Length = 954
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 218/559 (38%), Positives = 316/559 (56%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSNGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETHHCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCK---AVKPNLRVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHK 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IKVTHDHKDGTVEFNWKRYRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P++ +LVA++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLNLVALVEQQTVDPHW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK + L GD RLY++IVRHF+
Sbjct: 390 GAFAQTILERGGPTPRNGSKSDQAHPPIHPTKYT--SGLQGDDRRLYEFIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++ +P ++ G +V+M
Sbjct: 448 DAQGQETTVEIDIAQERFVAHGLIILARNYLDVYPYDHWSDKLLPVYEQGSHFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +TS +R +P LG+
Sbjct: 508 VDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>gi|348560295|ref|XP_003465949.1| PREDICTED: DNA topoisomerase 3-alpha-like [Cavia porcellus]
Length = 1002
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 215/559 (38%), Positives = 317/559 (56%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYYLYGQNVTMIMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMQFRKWHSCNPLVLFEAGIEKYCPENFIDIKKTLERETRQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCK---AVKPSLQVLRARFSEITPHAVRTACQNLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQKVFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHR 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IKVTHDHEDGIVDFNWKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P++ +L+A++ QQ P W
Sbjct: 330 VELEKLASRKLKINAKETMRIAEKLYTQGYISYPRTETNIFPKDLNLMALVEQQTQDPHW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK + L GD RLY++IVRHF+
Sbjct: 390 GPFAQSILERGGPTPRNGNKSDQAHPPIHPTKYT--SNLQGDERRLYEFIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++ +P ++ G +++M
Sbjct: 448 DAQGQETTVEIDIARERFVANGLTILARNYLDVYPYDRWSDKLLPVYEEGSHFQPSTIEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
++ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +TS +R +P LG+
Sbjct: 508 LDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>gi|345305221|ref|XP_001510142.2| PREDICTED: DNA topoisomerase 3-alpha [Ornithorhynchus anatinus]
Length = 994
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 211/522 (40%), Positives = 299/522 (57%), Gaps = 7/522 (1%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ L+G V MTSV GH++ DF ++ W +PL LF EK + +
Sbjct: 65 IYEFDYHLYGQNVTMVMTSVSGHLLAHDFQMQFRKWQSCNPLILFEAEIEKYCPENFVDI 124
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L EA+ C+ L++W DCD+EGENI FEV+ + + V+RARFS IT + +
Sbjct: 125 KRTLEREAQQCQTLMIWTDCDREGENIGFEVIHVCK---AVKPSLQVFRARFSEITPRAV 181
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQT 215
+ A L +P+ + +VD RQELDLRIG AFTR+QT Q + + L LISYG CQ
Sbjct: 182 QLACETLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQF 241
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKE 275
PTLGF VER I+ F PE + + +T V W R +F+ + C V ++ +E
Sbjct: 242 PTLGFVVERFKAIQAFVPESFHKIKVTHEHEDCLVEFNWKRHRLFNHTACLVLYQMCIEE 301
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
TVV+V S KSK +PQ L+TVEL ++AS L + M+IAE+LYT GY+SYPRTE
Sbjct: 302 PTATVVEVGSKPKSKWRPQPLDTVELEKLASRKLKINAKETMRIAEKLYTHGYISYPRTE 361
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRT 394
T +P++ +LVA+++QQ WGD + +L G PR G K HPPI PTK
Sbjct: 362 TNIFPKDLNLVALVQQQTQDQHWGDFAQRILDRGGPTPRNGNKSDQAHPPIHPTKYT--C 419
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
L GD RLY++IVRHF+ D + + +A E F +L + V +
Sbjct: 420 NLQGDEQRLYEFIVRHFLACCSQDAQGQETTVEIDIAHERFVAHGLMILARNYLEVYPYD 479
Query: 455 AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINN 514
++ IP ++ G +V+MVE +T+PP LTE++LISLMEKHGIGTDA+ HI
Sbjct: 480 RWSDKVIPIYEKGFRFQPTTVEMVEGETSPPQLLTEADLISLMEKHGIGTDATHAEHIET 539
Query: 515 ICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
I R YV +T+ +R +P LG+ LV GY + E+ +P +R+
Sbjct: 540 IKSRMYVGLTADKRFLPGHLGMGLVEGYDAMGYEMSKPNLRA 581
>gi|74140438|dbj|BAE42369.1| unnamed protein product [Mus musculus]
gi|74213102|dbj|BAE41691.1| unnamed protein product [Mus musculus]
Length = 773
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 217/559 (38%), Positives = 315/559 (56%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 8 VRKVLCVAEKNDAAKGIADLLSNGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGH 67
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E C+ LV+W DCD+E
Sbjct: 68 LLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETHHCQALVIWTDCDRE 127
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT ++ A NL +P+ + +VD RQE
Sbjct: 128 GENIGFEIIHVCK---AVKPNLRVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQE 184
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 185 LDLRIGAAFTRFQTLRLQRIFPEVLAGQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHK 244
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 245 IKVTHDHKDGTVEFNWKRYRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDT 304
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P++ +LVA++ QQ P W
Sbjct: 305 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLNLVALVEQQTVDPHW 364
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK + L GD RLY++IVRHF+
Sbjct: 365 GAFAQTILERGGPTPRNGSKSDQAHPPIHPTKYT--SSLQGDDRRLYEFIVRHFLACCSQ 422
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
+ + +A E F +L + V + ++ +P ++ G +V+M
Sbjct: 423 GAQGQETTVEIDIAQERFVAHGLIILARNYLDVYPYDHWSDKLLPVYEQGSHFQPSTVEM 482
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +TS +R +P LG+
Sbjct: 483 VDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHLGMG 542
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 543 LVEGYDSMGYEMSKPDLRA 561
>gi|6678403|ref|NP_033436.1| DNA topoisomerase 3-alpha [Mus musculus]
gi|6686029|sp|O70157.1|TOP3A_MOUSE RecName: Full=DNA topoisomerase 3-alpha; AltName: Full=DNA
topoisomerase III alpha
gi|3061308|dbj|BAA25662.1| topoisomerase III [Mus musculus]
gi|71043442|gb|AAH99689.1| Topoisomerase (DNA) III alpha [Mus musculus]
Length = 1003
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 218/559 (38%), Positives = 316/559 (56%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSNGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETHHCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCK---AVKPNLRVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHK 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IKVTHDHKDGTVEFNWKRYRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P++ +LVA++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLNLVALVEQQTVDPHW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK + L GD RLY++IVRHF+
Sbjct: 390 GAFAQTILERGGPTPRNGSKSDQAHPPIHPTKYT--SGLQGDDRRLYEFIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++ +P ++ G +V+M
Sbjct: 448 DAQGQETTVEIDIAQERFVAHGLIILARNYLDVYPYDHWSDKLLPVYEQGSHFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +TS +R +P LG+
Sbjct: 508 VDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>gi|344298058|ref|XP_003420711.1| PREDICTED: DNA topoisomerase 3-alpha [Loxodonta africana]
Length = 1006
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 219/559 (39%), Positives = 315/559 (56%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSNSRMRRREGLSKFNKIYEFDYHLYGQSVTMVMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK L + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFLDIKKTLERETQQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT + I+ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCK---AVKPSLPVLRARFSEITPRAIRLACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPETFHR 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T V W R +F+ + C V ++ ++ TVV+V S KSK +PQAL+T
Sbjct: 270 IKVTHEHEDGIVEFNWKRHRLFNHTACLVLYQLCMEDPTATVVEVCSKPKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAERLYTQGY+SYPRTET +P++ +L A++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAERLYTQGYISYPRTETNIFPKDLNLTALVEQQIQDPRW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK + L GD RLY++IVRHF+
Sbjct: 390 GAFAQSILERGGPTPRNGNKSDQAHPPIHPTKHT--SNLQGDEQRLYEFIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
+ + + +A E F +L + V + ++ IP ++ G +V+M
Sbjct: 448 NAQGQETTVEIDIAQERFLASGLMVLARNYLDVYPYDHWSDKIIPVYERGSSFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T+ +R +P LG+
Sbjct: 508 VDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTADKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>gi|322801677|gb|EFZ22300.1| hypothetical protein SINV_07705 [Solenopsis invicta]
Length = 1052
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 208/528 (39%), Positives = 305/528 (57%), Gaps = 19/528 (3%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR---EATPK 93
+ E+ L+G MTSV GH++G DFT Y W PL LF P K E K
Sbjct: 37 IFEFNVQLWGQNCQMVMTSVSGHLLGYDFTGAYRKWQGCSPLSLFDAPVSKECLGENYEK 96
Query: 94 LKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITD 153
+K L E + C L++W DCD+EGENI FE+++ + + S V+RA+FS IT
Sbjct: 97 IKRT--LEREIRSCNTLIIWTDCDREGENIGFEIIQVCKA---VKSNIRVYRAKFSEITK 151
Query: 154 KDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLIS 209
+ I+ A+ L +P+ + +VD R ELDLRIG AFTR+QT K F G+L LIS
Sbjct: 152 QSIERALQTLGEPDKAISDAVDVRSELDLRIGAAFTRFQTLRLQKIFPNTLGNL---LIS 208
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFF 269
YG CQ PTLGF VER I FK EPYW L + + +G++V W+R +F+K C +F
Sbjct: 209 YGSCQFPTLGFVVERFLAIDRFKSEPYWKLRIIDDRDGISVEFRWARVRLFEKMPCQIFL 268
Query: 270 KAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV 329
+ TV + KSK +P L+T+EL + S L + M+IAERLYTQG++
Sbjct: 269 DMCLERPDATVEKITCKPKSKWRPLPLDTIELEKQGSRKLRLNAKETMRIAERLYTQGFI 328
Query: 330 SYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPT 388
SYPRTET +P+ +L ++++QQ + DWGD R +L +G++ PR+GK HPPI PT
Sbjct: 329 SYPRTETDIFPKEMNLTSLVQQQVPNRDWGDFARNLLESGVT-PRQGKKSDQAHPPIHPT 387
Query: 389 KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
K L G+ ++Y+++VRHF+ L + + ++A+E FT ++ +
Sbjct: 388 KYT--DSLQGNEAKVYEFVVRHFLACLSKNAEGRETTVDINIANERFTANGLEIIAKNYL 445
Query: 449 GVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASI 508
V + N+ I ++ + S++M+E KT+PP LTE+ELI+LM+KHGIGTDA+
Sbjct: 446 EVYIYEKWNNKQIHSYQQRQVFRPTSIEMIEEKTSPPKLLTEAELIALMDKHGIGTDATH 505
Query: 509 PVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
HI+ I R YV +T+ + +P LGI LV GY + ++ +P +R+
Sbjct: 506 AEHIDTIKSRQYVGLTNTQHFMPGKLGIGLVMGYDNMGFQMSKPHLRA 553
>gi|292611936|ref|XP_688695.4| PREDICTED: DNA topoisomerase 3-alpha [Danio rerio]
Length = 998
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 213/562 (37%), Positives = 317/562 (56%), Gaps = 15/562 (2%)
Query: 4 RVKKLVPASEIKLARPSLISLLTP-LQRMNGACSVH----EWVGPLFGDLVLFKMTSVCG 58
++KK++ +E A + +++ R CSV+ E+ LFG V MTSV G
Sbjct: 29 QIKKVLCVAEKNDAAKGIAEIMSNGRSRRREGCSVYNKIYEYEYNLFGQNVTVNMTSVSG 88
Query: 59 HIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDK 118
H++ L+F + + W P+ LF EK + + L E + C+ L++W DCD+
Sbjct: 89 HLLALEFKAPFQKWHSCSPVLLFDAEVEKYCPENFIPIKRTLEREVRQCQALIVWTDCDR 148
Query: 119 EGENICFEVMEAVRH-QININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDAR 177
EGENI FE+++ + + NI V+RARFS IT I+ A L +P+I + +VD R
Sbjct: 149 EGENIGFEIIDVCKAVKPNIQ----VFRARFSEITPNSIRRACETLTEPDINVSDAVDVR 204
Query: 178 QELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPY 236
QELDLRIG +FTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 205 QELDLRIGASFTRFQTLRLQKIFPESLSDQLISYGSCQFPTLGFVVERFKAIQAFIPETF 264
Query: 237 WLLDLTLNLNGV-AVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQA 295
+ + + N +V W R +F+ + C V ++ +E V+ V S KSK +P
Sbjct: 265 FKIKVVHEPNEEESVEFNWKRHRLFNHTACLVLYQMCMEEPMAKVISVTSKPKSKWRPLP 324
Query: 296 LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESS 355
L+TVEL ++AS L + M+IAE+LYTQG++SYPRTET +P+N +L ++ QQ
Sbjct: 325 LDTVELEKLASRKLRISAKETMKIAEKLYTQGFISYPRTETNMFPQNLNLTRLVEQQTQD 384
Query: 356 PDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGT 414
+WG+ + +L +G PR G K HPPI PTK L G+ RLY++IVRHF+
Sbjct: 385 QEWGNFAQRILESGGPTPRNGNKSDQAHPPIHPTKYTN--GLQGNEKRLYEFIVRHFLAC 442
Query: 415 LCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQS 474
D + + +A+E F+ ++ + V + N+ IP + P +
Sbjct: 443 CSKDAQGQEVTVEIDIAEERFSASGLTIIARNYLEVYPYDKWYNKVIPSYSPNTTFQPTA 502
Query: 475 VKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSL 534
++MVE +T+PP LTE++LISLMEKHGIGTDA+ HI I R YV +T+ +R +P L
Sbjct: 503 IEMVEGQTSPPQLLTEADLISLMEKHGIGTDATHAEHIETIKSRMYVGLTADQRFLPGEL 562
Query: 535 GIVLVHGYQKIDRELVEPTMRS 556
G+ LV GY + E+ +P +R+
Sbjct: 563 GMGLVEGYNSMGYEMSKPDLRA 584
>gi|402898997|ref|XP_003912493.1| PREDICTED: DNA topoisomerase 3-alpha [Papio anubis]
Length = 998
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/559 (38%), Positives = 313/559 (55%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT + ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCK---TVKPNLQVLRARFSEITPRAVRTACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQKIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHR 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IKVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P + +L ++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK L GD RLY++IVRHF+
Sbjct: 390 GAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++ +P ++ G +V+M
Sbjct: 448 DAQGQETTVEIDIAQERFVAHGLVILARNYLDVYPYDHWSDKILPVYERGSRFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T +R +P LG+
Sbjct: 508 VDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>gi|383412619|gb|AFH29523.1| DNA topoisomerase 3-alpha [Macaca mulatta]
Length = 1001
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/559 (38%), Positives = 312/559 (55%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSSGRMRRREGLSKFNKIYEFDYHLYGQSVTMVMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCK---TVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQKIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHR 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IKVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P + +L ++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK L GD RLY++IVRHF+
Sbjct: 390 GAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++ +P ++ G +V+M
Sbjct: 448 DAQGQETTVEIDIAQERFVAHGLVILARNYLDVYPYDHWSDKILPVYERGSRFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T +R +P LG+
Sbjct: 508 VDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>gi|355568310|gb|EHH24591.1| DNA topoisomerase 3-alpha [Macaca mulatta]
Length = 1001
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/559 (38%), Positives = 313/559 (55%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQSVTMVMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCK---TVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQKIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHR 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IKVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P + +L ++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK L GD RLY++IVRHF+
Sbjct: 390 GAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F + +L + V + ++ +P ++ G +V+M
Sbjct: 448 DAQGQETTVEIDIAQERFVAHSLVILARNYLDVYPYDHWSDKILPVYERGSRFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T +R +P LG+
Sbjct: 508 VDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>gi|380789899|gb|AFE66825.1| DNA topoisomerase 3-alpha [Macaca mulatta]
gi|380789901|gb|AFE66826.1| DNA topoisomerase 3-alpha [Macaca mulatta]
Length = 1001
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/559 (38%), Positives = 312/559 (55%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQSVTMVMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCK---TVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQKIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHR 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IKVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P + +L ++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK L GD RLY++IVRHF+
Sbjct: 390 GAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++ +P ++ G +V+M
Sbjct: 448 DAQGQETTVEIDIAQERFVAHGLVILARNYLDVYPYDHWSDKILPVYERGSRFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T +R +P LG+
Sbjct: 508 VDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>gi|1292913|gb|AAB03695.1| DNA topoisomerase III [Homo sapiens]
Length = 976
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 218/564 (38%), Positives = 315/564 (55%), Gaps = 13/564 (2%)
Query: 1 MHLR-VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMT 54
M LR V+K++ +E A + LL+ ++R G ++E+ L+G V MT
Sbjct: 3 MALRGVRKVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMT 62
Query: 55 SVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWL 114
SV GH++ DF ++ W +PL LF EK + + L E + C+ LV+W
Sbjct: 63 SVSGHLLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWT 122
Query: 115 DCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSV 174
DCD+EGENI FE++ + + V RARFS IT ++ A NL +P+ + +V
Sbjct: 123 DCDREGENIGFEIIHVCK---AVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAV 179
Query: 175 DARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKP 233
D RQELDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F P
Sbjct: 180 DVRQELDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVP 239
Query: 234 EPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKP 293
E + + +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +P
Sbjct: 240 EIFHRIKVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCVEDPMATVVEVRSKPKSKWRP 299
Query: 294 QALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQE 353
QAL+TVEL ++AS L + M+IAE+LYTQGY+SYPRTET +P + +L ++ QQ
Sbjct: 300 QALDTVELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQT 359
Query: 354 SSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFI 412
P WG + +L G PR G K HPPI PTK L GD RLY++IVRHF+
Sbjct: 360 PDPRWGAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYT--NNLQGDEQRLYEFIVRHFL 417
Query: 413 GTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPI 472
D + + +A E F +L + V + ++ +P ++ G
Sbjct: 418 ACCSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQP 477
Query: 473 QSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPT 532
+V+MV+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T +R +P
Sbjct: 478 STVEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPG 537
Query: 533 SLGIVLVHGYQKIDRELVEPTMRS 556
LG+ LV GY + E+ +P +R+
Sbjct: 538 HLGMGLVEGYDSMGYEMSKPDLRA 561
>gi|10835218|ref|NP_004609.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|2501242|sp|Q13472.1|TOP3A_HUMAN RecName: Full=DNA topoisomerase 3-alpha; AltName: Full=DNA
topoisomerase III alpha
gi|1292912|gb|AAB03694.1| DNA topoisomerase III [Homo sapiens]
gi|30353789|gb|AAH51748.1| Topoisomerase (DNA) III alpha [Homo sapiens]
gi|119576050|gb|EAW55646.1| topoisomerase (DNA) III alpha, isoform CRA_a [Homo sapiens]
gi|119576052|gb|EAW55648.1| topoisomerase (DNA) III alpha, isoform CRA_a [Homo sapiens]
gi|119576053|gb|EAW55649.1| topoisomerase (DNA) III alpha, isoform CRA_a [Homo sapiens]
gi|158259313|dbj|BAF85615.1| unnamed protein product [Homo sapiens]
gi|311347058|gb|ADP90454.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347060|gb|ADP90455.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347062|gb|ADP90456.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347064|gb|ADP90457.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347066|gb|ADP90458.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347068|gb|ADP90459.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347070|gb|ADP90460.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347072|gb|ADP90461.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347074|gb|ADP90462.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347076|gb|ADP90463.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347078|gb|ADP90464.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347080|gb|ADP90465.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347082|gb|ADP90466.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347084|gb|ADP90467.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347086|gb|ADP90468.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347088|gb|ADP90469.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347090|gb|ADP90470.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347092|gb|ADP90471.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347094|gb|ADP90472.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347096|gb|ADP90473.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347098|gb|ADP90474.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347100|gb|ADP90475.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347102|gb|ADP90476.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347104|gb|ADP90477.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347106|gb|ADP90478.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347108|gb|ADP90479.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347110|gb|ADP90480.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347112|gb|ADP90481.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347114|gb|ADP90482.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347116|gb|ADP90483.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347118|gb|ADP90484.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347120|gb|ADP90485.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347122|gb|ADP90486.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347124|gb|ADP90487.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347126|gb|ADP90488.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347128|gb|ADP90489.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347130|gb|ADP90490.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347132|gb|ADP90491.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347134|gb|ADP90492.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347136|gb|ADP90493.1| DNA topoisomerase 3-alpha [Homo sapiens]
Length = 1001
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 218/564 (38%), Positives = 315/564 (55%), Gaps = 13/564 (2%)
Query: 1 MHLR-VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMT 54
M LR V+K++ +E A + LL+ ++R G ++E+ L+G V MT
Sbjct: 28 MALRGVRKVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMT 87
Query: 55 SVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWL 114
SV GH++ DF ++ W +PL LF EK + + L E + C+ LV+W
Sbjct: 88 SVSGHLLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWT 147
Query: 115 DCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSV 174
DCD+EGENI FE++ + + V RARFS IT ++ A NL +P+ + +V
Sbjct: 148 DCDREGENIGFEIIHVCK---AVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAV 204
Query: 175 DARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKP 233
D RQELDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F P
Sbjct: 205 DVRQELDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVP 264
Query: 234 EPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKP 293
E + + +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +P
Sbjct: 265 EIFHRIKVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCVEDPMATVVEVRSKPKSKWRP 324
Query: 294 QALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQE 353
QAL+TVEL ++AS L + M+IAE+LYTQGY+SYPRTET +P + +L ++ QQ
Sbjct: 325 QALDTVELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQT 384
Query: 354 SSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFI 412
P WG + +L G PR G K HPPI PTK L GD RLY++IVRHF+
Sbjct: 385 PDPRWGAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYT--NNLQGDEQRLYEFIVRHFL 442
Query: 413 GTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPI 472
D + + +A E F +L + V + ++ +P ++ G
Sbjct: 443 ACCSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQP 502
Query: 473 QSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPT 532
+V+MV+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T +R +P
Sbjct: 503 STVEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPG 562
Query: 533 SLGIVLVHGYQKIDRELVEPTMRS 556
LG+ LV GY + E+ +P +R+
Sbjct: 563 HLGMGLVEGYDSMGYEMSKPDLRA 586
>gi|114668853|ref|XP_511323.2| PREDICTED: DNA topoisomerase 3-alpha isoform 3 [Pan troglodytes]
gi|410209052|gb|JAA01745.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410209054|gb|JAA01746.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410209056|gb|JAA01747.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410258364|gb|JAA17149.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410258366|gb|JAA17150.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410258368|gb|JAA17151.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410258370|gb|JAA17152.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410293004|gb|JAA25102.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410293006|gb|JAA25103.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410341687|gb|JAA39790.1| topoisomerase (DNA) III alpha [Pan troglodytes]
Length = 1001
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/559 (38%), Positives = 312/559 (55%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCK---AVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHR 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IKVTHDHRDGIVEFNWKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P + +L ++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK L GD RLY++IVRHF+
Sbjct: 390 GAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++ +P ++ G +V+M
Sbjct: 448 DAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T +R +P LG+
Sbjct: 508 VDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>gi|71894753|ref|NP_001025807.1| DNA topoisomerase 3-alpha isoform 1 [Gallus gallus]
gi|66796185|dbj|BAD99110.1| topoisomerase III alpha [Gallus gallus]
Length = 1020
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 212/560 (37%), Positives = 316/560 (56%), Gaps = 12/560 (2%)
Query: 4 RVKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCG 58
R++K++ +E A + LL+ ++R G ++E+ +FG V MTSV G
Sbjct: 34 RIRKVLCVAEKNDAARGIADLLSNSRMRRREGFSKFNKIYEYDYQMFGQNVTMVMTSVSG 93
Query: 59 HIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDK 118
H++ DF + W +PL LF EK + + L E + C+ LV+W DCD+
Sbjct: 94 HLLAHDFKLPFRKWHSCNPLALFDAEIEKYCPENYVDIKRTLEREVQQCQALVIWTDCDR 153
Query: 119 EGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQ 178
EGENI FE++ + + V+RARFS IT ++ A NL +P+ + +V+ RQ
Sbjct: 154 EGENIGFEIIHVCK---AVKPNLQVFRARFSEITLHAVRRACENLTQPDQKTSDAVEVRQ 210
Query: 179 ELDLRIGCAFTRYQTKFFQGKYGDLDA-SLISYGPCQTPTLGFCVERHDKIRTFKPEPYW 237
ELDLRIG AFTR+QT Q + D+ A LISYG CQ PTLGF VER I+ F PE ++
Sbjct: 211 ELDLRIGAAFTRFQTLRLQKIFPDILADQLISYGSCQFPTLGFVVERFKAIQAFVPEAFY 270
Query: 238 LLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALN 297
+ +T + V W R +F+ + C V + ++ TVV+V S KSK +P L+
Sbjct: 271 KIKVTHDHEDGNVVFNWKRNRLFNHTACLVLYHMCMEDPIATVVEVGSKPKSKWRPLPLD 330
Query: 298 TVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPD 357
TVEL ++AS L + M+IAE+LYTQG++SYPRTET +P+ +L A+++ Q P+
Sbjct: 331 TVELEKLASRKLKINAKETMRIAEKLYTQGFISYPRTETNIFPKELNLSALVQHQTQDPN 390
Query: 358 WGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLC 416
WG + +L G PR G K HPPI PTK L G+ RLY++IVRHF+
Sbjct: 391 WGAFAQRILDQGGPTPRNGTKSDQAHPPIHPTKYT--ANLQGNEQRLYEFIVRHFLACCS 448
Query: 417 GDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVK 476
D + + +A+E F + +L + V + ++ IP ++ G +V+
Sbjct: 449 QDAKGQETTVEIDIANERFVAQGLMILARNYLEVYPYEKWSDKVIPLYQKGSRFQPTTVE 508
Query: 477 MVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGI 536
MV+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T+ +R +P LG+
Sbjct: 509 MVDGETSPPLLLTEADLIALMEKHGIGTDATHAEHIETIKTRMYVGLTADQRFLPGHLGM 568
Query: 537 VLVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 569 GLVEGYDSMGYEMSKPDLRA 588
>gi|397476895|ref|XP_003809826.1| PREDICTED: DNA topoisomerase 3-alpha isoform 1 [Pan paniscus]
Length = 1001
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/559 (38%), Positives = 312/559 (55%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCK---AVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHR 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IKVTHDHRDGIVEFNWKRHRLFNHTACLVLYQLCMEDPIATVVEVRSKPKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P + +L ++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK L GD RLY++IVRHF+
Sbjct: 390 GAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++ +P ++ G +V+M
Sbjct: 448 DAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T +R +P LG+
Sbjct: 508 VDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>gi|348511454|ref|XP_003443259.1| PREDICTED: DNA topoisomerase 3-alpha [Oreochromis niloticus]
Length = 1054
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 204/523 (39%), Positives = 299/523 (57%), Gaps = 8/523 (1%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ LFG V MTSV GH++GL+F + + W +P+ LF EK L++
Sbjct: 87 IYEYEYHLFGQNVTVTMTSVSGHLLGLEFKAPFQKWHSCNPVLLFDAEVEKYCPDNMLQI 146
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L E + C+ LV+W DCD+EGENI FE+++ + + V+RA+FS IT I
Sbjct: 147 KRTLEKEVRQCQALVIWTDCDREGENIGFEIIDVCKA---VKPNLQVFRAKFSEITPNSI 203
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQT 215
+ A L +P+ + +VD RQELDLRIG +FTR+QT Q + + L LISYG CQ
Sbjct: 204 RRACETLTEPDANVSDAVDVRQELDLRIGASFTRFQTLRLQKIFPESLANQLISYGSCQF 263
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKE 275
PTLGF VER I+ F PE ++ + + + V W R +F+ + C V ++ ++
Sbjct: 264 PTLGFVVERFKAIQAFIPETFYKIKVIHEVEEDCVDFNWKRNRLFNHTACLVLYQICMED 323
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
TV V S KSK +P L+TVEL ++AS L + M+IAE+LYTQG++SYPRTE
Sbjct: 324 PIATVTSVTSKPKSKWRPLPLDTVELEKLASRKLRISAKETMKIAEKLYTQGFISYPRTE 383
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSN-GISKPRKGKDVGD-HPPITPTKLATR 393
T +P N L ++ QQ SP WG + VL G PR+GK+ HPPI PTK
Sbjct: 384 TNIFPPNLALTPLVEQQTHSPVWGAFAQRVLDQPGGPNPRQGKNSDQAHPPIHPTKFT-- 441
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
L G+ R+Y++IVRHF+ + D + + V +A E F+ ++ + V +
Sbjct: 442 NALQGNEGRVYEFIVRHFLACVSQDALGQETVVDIDIAQEKFSASGLMIIARNYLDVYPY 501
Query: 454 SAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
+ IP ++ G +++MV+ +T+PP LTE++LISLMEKHGIGTDA+ HI
Sbjct: 502 DRWSTKVIPVYEQGSQFQPSAIEMVDGQTSPPQLLTEADLISLMEKHGIGTDATHAEHIE 561
Query: 514 NICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
I R YV +T+ +R P LG+ LV GY + E+ +P +R+
Sbjct: 562 TIKSRMYVGLTADQRFTPGELGMGLVEGYNSMGYEMSKPNLRA 604
>gi|326929014|ref|XP_003210667.1| PREDICTED: DNA topoisomerase 3-alpha-like [Meleagris gallopavo]
Length = 1020
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 212/560 (37%), Positives = 316/560 (56%), Gaps = 12/560 (2%)
Query: 4 RVKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCG 58
R++K++ +E A + LL+ ++R G ++E+ +FG V MTSV G
Sbjct: 34 RIRKVLCVAEKNDAARGIADLLSNSRMRRREGFSKFNKIYEYDYQMFGQNVTMVMTSVSG 93
Query: 59 HIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDK 118
H++ DF + W +PL LF EK + + L E + C+ LV+W DCD+
Sbjct: 94 HLLAHDFKLPFRKWHSCNPLALFDAEIEKYCPENYVDIKRTLEREVQQCQALVIWTDCDR 153
Query: 119 EGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQ 178
EGENI FE++ + + V+RARFS IT ++ A NL +P+ + +V+ RQ
Sbjct: 154 EGENIGFEIIHVCKA---VKPNLQVFRARFSEITLHAVRRACENLTQPDQKTSDAVEVRQ 210
Query: 179 ELDLRIGCAFTRYQTKFFQGKYGDLDA-SLISYGPCQTPTLGFCVERHDKIRTFKPEPYW 237
ELDLRIG AFTR+QT Q + D+ A LISYG CQ PTLGF VER I+ F PE ++
Sbjct: 211 ELDLRIGAAFTRFQTLRLQKIFPDILADQLISYGSCQFPTLGFVVERFKAIQAFVPEAFY 270
Query: 238 LLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALN 297
+ +T + V W R +F+ + C V + ++ TVV+V S KSK +P L+
Sbjct: 271 KIKVTHDHEDGNVVFNWKRNRLFNHTACLVLYHMCMEDPVATVVEVGSKPKSKWRPLPLD 330
Query: 298 TVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPD 357
TVEL ++AS L + M+IAE+LYTQG++SYPRTET +P+ +L A+++ Q P+
Sbjct: 331 TVELEKLASRKLKINAKETMRIAEKLYTQGFISYPRTETNIFPKELNLSALVQHQTQDPN 390
Query: 358 WGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLC 416
WG + +L G PR G K HPPI PTK L G+ RLY++IVRHF+
Sbjct: 391 WGAFAQRILDQGGPTPRNGTKSDQAHPPIHPTKYT--ANLQGNEQRLYEFIVRHFLACCS 448
Query: 417 GDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVK 476
D + + +A+E F + +L + V + ++ IP ++ G +V+
Sbjct: 449 QDAKGQETTVEIDIANERFIAQGLMILARNYLEVYPYEKWSDKVIPLYQKGSRFQPTTVE 508
Query: 477 MVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGI 536
MV+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T+ +R +P LG+
Sbjct: 509 MVDGETSPPLLLTEADLIALMEKHGIGTDATHAEHIETIKTRMYVGLTADQRFLPGHLGM 568
Query: 537 VLVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 569 GLVEGYDSMGYEMSKPDLRA 588
>gi|332261726|ref|XP_003279918.1| PREDICTED: DNA topoisomerase 3-alpha isoform 1 [Nomascus
leucogenys]
Length = 1001
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 214/559 (38%), Positives = 311/559 (55%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCK---AVKPNLQVLRARFSEITPHAVRTACENLTEPDRRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHR 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IKVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P + +L ++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK L GD RLY++IVRHF+
Sbjct: 390 GAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + + E F +L + V + ++ +P ++ G +V+M
Sbjct: 448 DAQGQETTVEIDITQERFVAHGLVILARNYLDVYPYDHWSDKILPIYERGSCFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T +R +P LG+
Sbjct: 508 VDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>gi|327287266|ref|XP_003228350.1| PREDICTED: DNA topoisomerase 3-alpha-like [Anolis carolinensis]
Length = 997
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 212/522 (40%), Positives = 297/522 (56%), Gaps = 7/522 (1%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E L G V MTSV GH++ DF + W +PL LF EK L +
Sbjct: 74 IYECQYHLLGQNVTVVMTSVSGHLLAHDFKLPFRKWHSCNPLVLFDAEIEKFCPENYLDI 133
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L E + C+ LV+W DCD+EGENI FEV++ + + V+RARFS IT + I
Sbjct: 134 KRTLEREVQQCQALVIWTDCDREGENIGFEVIDVCK---AVKPSLQVFRARFSEITPRAI 190
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQT 215
K A NL +P+ +VD RQELDLRIG AFTR+QT Q + + L LISYG CQ
Sbjct: 191 KTACENLTQPDQNVNDAVDVRQELDLRIGAAFTRFQTMRLQKIFPEVLAEQLISYGSCQF 250
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKE 275
PTLGF VER I+ F E ++ + +T + V +W R +F+ + C + ++ ++
Sbjct: 251 PTLGFVVERFKAIQAFVAETFYKIKVTHDHEEGTVDFSWKRNRLFNHTACLILYQMCMED 310
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
TVV+V S KSK +P L+TVEL ++AS L + M+IAE+LYTQGY+SYPRTE
Sbjct: 311 PLATVVEVGSRPKSKWRPLPLDTVELEKLASRKLKINAKETMKIAEKLYTQGYISYPRTE 370
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRT 394
T +P++ +L +++ Q P WG + +L G PR G K HPPI PTK A T
Sbjct: 371 TNIFPKDLNLPNLVQLQTLDPRWGAFAQRILDQGGPTPRSGTKSDQAHPPIHPTKHA--T 428
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
L G+ RLY++IVRHF+ D + + VA+E F +L + V +
Sbjct: 429 NLQGNDQRLYEFIVRHFLACCSQDAKGQETTVEIDVANERFVAHGLMILARNYLEVYPYE 488
Query: 455 AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINN 514
++ IP ++ G +V+MVE +T+PP LTE++LISLMEKHGIGTDA+ HI
Sbjct: 489 KWSDKVIPVYEKGSRFQPSTVEMVEGETSPPQLLTEADLISLMEKHGIGTDATHAEHIET 548
Query: 515 ICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
I R YV +T +R VP LG+ LV GY + E+ +P +R+
Sbjct: 549 IKSRMYVGLTPDQRFVPGELGMGLVEGYDSMGYEMSKPDLRA 590
>gi|307184421|gb|EFN70830.1| DNA topoisomerase 3-alpha [Camponotus floridanus]
Length = 1044
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 205/511 (40%), Positives = 294/511 (57%), Gaps = 15/511 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPK-LKLPAFLANEAKDCEFLV 111
MTSV GH++G +FT Y W PL LF P K+ + +K+ L E K C L+
Sbjct: 53 MTSVSGHLLGYEFTGAYRKWQGCHPLSLFDAPVSKQCSEENYIKIKKTLEREIKSCNALI 112
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
+W DCD+EGENI FE+++ + + V+RA+FS IT + I+ A+ L +P+ +
Sbjct: 113 IWTDCDREGENIGFEIIQVCQ---TVKPNIRVYRAKFSEITKQSIERALSTLGEPDKATS 169
Query: 172 RSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYGPCQTPTLGFCVERHDK 227
+VD R ELDLRIG AFTR+QT K F GD+ LISYG CQ PTLGF VER
Sbjct: 170 DAVDVRSELDLRIGAAFTRFQTLRLQKVFPNTLGDM---LISYGSCQFPTLGFVVERFLA 226
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
I FK EPYW + + + N +AV W+R +F+K C +F + TV V
Sbjct: 227 IDRFKSEPYWKIKVIDDRNEIAVEFRWARVRLFEKMPCQIFLDMCLERPEATVEKVMCKP 286
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
KSK +P L+T+EL + S L + M+IAE+LYTQG++SYPRTET +P+ +LV
Sbjct: 287 KSKWRPLPLDTIELEKQGSRKLRLNAKETMRIAEKLYTQGFISYPRTETNIFPKELNLVP 346
Query: 348 VLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDY 406
++ QQ + WGD R +L +GI+ PR+GK HPPI PTK L G+ R+Y++
Sbjct: 347 LVEQQVNHEAWGDFARGLLESGIT-PRQGKKSDQAHPPIHPTKYT--DSLQGNEARVYEF 403
Query: 407 IVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKP 466
IVRHF+ L + + + +A E FT ++ + V + N+ I ++
Sbjct: 404 IVRHFLACLSKNAEGRETTVEIDIAGEKFTTNGLEIIAKNYLDVYIYDKWNNKQIHSYEQ 463
Query: 467 GDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSG 526
+ S+ MVE KT+ P+ LTE+ELI+LM+KHGIGTDA+ HI+ I R YV +T
Sbjct: 464 RQVFRPTSIDMVEEKTSAPNLLTEAELIALMDKHGIGTDATHADHIDTIKSRQYVGLTDS 523
Query: 527 RRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
+ +P LGI LV GY + ++ +P +R++
Sbjct: 524 QHFMPGKLGIGLVMGYDNMGFQMSKPHLRAS 554
>gi|291224920|ref|XP_002732450.1| PREDICTED: MGC80537 protein-like [Saccoglossus kowalevskii]
Length = 916
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 213/563 (37%), Positives = 317/563 (56%), Gaps = 14/563 (2%)
Query: 1 MHLRVKKLVPASEIKLARPSLISLLTP--LQRMNGAC---SVHEWVGPLFGDLVLFKMTS 55
M RV +++ +E A SL +++ R G ++EW + MTS
Sbjct: 1 MAGRVTRVLNVAEKNDAAKSLADVMSRGHYNRREGFSVYNKIYEWDFNILNRNCKMTMTS 60
Query: 56 VCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLD 115
V GH+ +F Y W DP LF P EK + L EA+ C+ L++W D
Sbjct: 61 VSGHLSNYEFIGVYQKWLGCDPAMLFDAPVEKL-CKDFQDIKRTLEREARQCKILIIWTD 119
Query: 116 CDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVD 175
D+EGENI +E+++ N+N+ V+RARFS IT + I NL++P+ + +VD
Sbjct: 120 GDREGENIGYEIIDIC---TNVNARLDVYRARFSEITPRSITRTCDNLIRPDKRTSDAVD 176
Query: 176 ARQELDLRIGCAFTRYQTKFFQGKYGDLDA-SLISYGPCQTPTLGFCVERHDKIRTFKPE 234
RQELDLRIG AFTR+QT + + + A SLIS+G CQ PTLGF VER+ ++++F PE
Sbjct: 177 VRQELDLRIGAAFTRFQTLRLKKVFPQVLADSLISFGSCQFPTLGFVVERYKQVKSFIPE 236
Query: 235 PYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQ 294
++ + +T + V W R +FD + C VF++ + V++VQS KSK +P
Sbjct: 237 TFYRIKVTHATDDGNVDFHWKRHRLFDHTACLVFYQLCMENPLAKVINVQSRNKSKWRPT 296
Query: 295 ALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQES 354
++TVE+ ++AS L + M+IAE+LYT+G++SYPRTET +P+ DL ++ Q
Sbjct: 297 PMDTVEMEKLASRKLKITAKETMKIAEKLYTKGFISYPRTETNIFPKELDLRPLVENQVQ 356
Query: 355 SPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVRHFIG 413
P+WG VL +G PR+GK + HPPI PTK DG+ R+Y+ IVRHF+
Sbjct: 357 DPNWGAFAAGVLQHG-PNPRQGKKTDNAHPPIHPTKYG--NNFDGNEKRVYELIVRHFLA 413
Query: 414 TLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQ 473
L D + + +A E+FT + ++ + V + + IP F+ G+
Sbjct: 414 CLSQDAQGHETTVEIDIAAEIFTAQGLMIIARNYLDVYPYDKWNAKIIPRFQQGEEFQPT 473
Query: 474 SVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTS 533
+++MV+ +TT P LTE++LISLMEKHGIGTDA+ HI+ + RNYV +T R VP
Sbjct: 474 AIEMVDGETTAPPLLTEADLISLMEKHGIGTDATHADHIDTVKSRNYVGLTDEGRFVPGE 533
Query: 534 LGIVLVHGYQKIDRELVEPTMRS 556
LGI LV GY + EL +P +R+
Sbjct: 534 LGIGLVDGYNNMGYELSKPNLRA 556
>gi|307201913|gb|EFN81542.1| DNA topoisomerase 3-alpha [Harpegnathos saltator]
Length = 1049
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 204/523 (39%), Positives = 298/523 (56%), Gaps = 9/523 (1%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPK-LK 95
+ E+ L+G MTSV GH++G +FT Y W PL LF P K+ + +K
Sbjct: 37 IFEFNVQLWGQNCQMIMTSVSGHLLGFEFTGSYRKWQGCHPLSLFDAPVFKQCSDESYIK 96
Query: 96 LPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKD 155
+ L E + C L++W DCD+EGENI FE+++ + I ++RA+FS IT +
Sbjct: 97 IKKTLEREIRSCNALIIWTDCDREGENIGFEIIQVCQV---IKPNIRIYRAKFSEITKQS 153
Query: 156 IKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQ 214
I+ A+ L +P+ + +VD R ELDLRIG AFTR+QT Q + D L LISYG CQ
Sbjct: 154 IERALQTLGEPDKAMSDAVDVRSELDLRIGAAFTRFQTLRLQKVFPDTLSNMLISYGSCQ 213
Query: 215 TPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEK 274
PTLGF VER I FK EPYW + + +G+ V W+R +F+K C +F +
Sbjct: 214 FPTLGFVVERFLAIDRFKSEPYWKIKVIDEHDGIFVEFRWARVRLFEKMPCQIFLDMCLE 273
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRT 334
TV V KSK +P L+T+EL + S L + M+IAERLYTQG +SYPRT
Sbjct: 274 RPEATVEKVTCKPKSKWRPLPLDTIELEKQGSRKLRLNAKETMRIAERLYTQGLISYPRT 333
Query: 335 ETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATR 393
ET +P+ +L A++ QQ ++ WG+ R +L +GI PR+GK HPPI PTK
Sbjct: 334 ETNIFPKELNLAALVEQQVNNQAWGNFARGLLESGII-PRQGKKSDQAHPPIHPTKYT-- 390
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
L G+ ++Y+++VRHF+ + + + + +A E FT +L + V +
Sbjct: 391 DNLQGNEAKVYEFVVRHFLACVSKNAEGQETTVEIDIAGEKFTTNGLEVLAKNYLDVYIY 450
Query: 454 SAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
++ I ++P + S+ MVE KT+PP+ LTE+ELI+LM+KHGIGTDA+ HI+
Sbjct: 451 EKWNDKEIHSYQPRQVFRPTSIDMVEEKTSPPNLLTEAELIALMDKHGIGTDATHAEHID 510
Query: 514 NICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
I R YV +T + +P LGI LV GY + ++ +P +R+
Sbjct: 511 TIKSRQYVGLTDTQHFMPGKLGIGLVMGYDNMGFQMSKPNLRA 553
>gi|444525410|gb|ELV14017.1| DNA topoisomerase 3-alpha [Tupaia chinensis]
Length = 967
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 205/510 (40%), Positives = 290/510 (56%), Gaps = 7/510 (1%)
Query: 49 VLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCE 108
V MTSV GH++ DF ++ W +PL LF EK + + L E + C+
Sbjct: 62 VAMVMTSVSGHLLVHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQ 121
Query: 109 FLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNI 168
LV+W DCD+EGENI FE++ + V RARFS IT ++ A NL +P+
Sbjct: 122 ALVIWTDCDREGENIGFEIIHVC---TAVKPSLRVLRARFSEITPHAVRTACENLTEPDQ 178
Query: 169 FEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDK 227
+ +VD RQELDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER
Sbjct: 179 RVSDAVDVRQELDLRIGAAFTRFQTLRLQRVFPEVLTEQLISYGSCQFPTLGFVVERFKA 238
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
I+ F PE + + + + V W R +F+ + C V + ++ TVV+V+S
Sbjct: 239 IQAFVPETFHRIKVNHDHEDGIVEFNWKRHRLFNHTACLVLYHLCMEDPMATVVEVKSKP 298
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
KSK +PQAL+TVEL ++AS L + M+IAE+LYTQG++SYPRTET +P++ +L A
Sbjct: 299 KSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQGFISYPRTETNIFPKDLNLTA 358
Query: 348 VLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDY 406
++ QQ P WG R +L G PR G K HPPI PTK A + L GD RLY++
Sbjct: 359 LVDQQTQDPRWGAFARSILERGGPNPRNGNKSDQAHPPIHPTKYA--SNLQGDEQRLYEF 416
Query: 407 IVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKP 466
IVRHF+ D + + +A E F +L + V + ++ +P ++
Sbjct: 417 IVRHFLACCSQDAQGQETTVEIDIAQERFVAHGLVILARNYLDVYPYDHWSDKLLPVYER 476
Query: 467 GDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSG 526
G +V+MV+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T
Sbjct: 477 GSRFQPSAVEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPD 536
Query: 527 RRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
+R +P LG+ LV GY + E+ +P +R+
Sbjct: 537 KRFLPGHLGMGLVEGYDSMGYEMSKPDLRA 566
>gi|328786138|ref|XP_394050.4| PREDICTED: DNA topoisomerase 3-alpha-like [Apis mellifera]
Length = 1012
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/510 (37%), Positives = 294/510 (57%), Gaps = 15/510 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR-EATPKLKLPAFLANEAKDCEFLV 111
MTSV GH++ +F Y W PL LF P K+ +K+ L E + C L+
Sbjct: 53 MTSVSGHLLNCEFVGIYRKWQSCHPLSLFDAPVVKQCSQESSIKIKKTLEKEVQKCNALI 112
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
+W DCD+EGENI FE+++ R I ++RA+FS IT + ++ NL +P+ +
Sbjct: 113 IWTDCDREGENIGFEIIQVCRA---IKPNIRIYRAKFSEITQTSVNRSLQNLCEPDKAIS 169
Query: 172 RSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYGPCQTPTLGFCVERHDK 227
+VD R ELDLRIG AFTR+QT K F D+ LISYG CQ PTLGF VER
Sbjct: 170 DAVDVRSELDLRIGAAFTRFQTLRLRKVFPTTLADM---LISYGSCQFPTLGFVVERFLA 226
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
I FK EPYW + + + ++V W RG +F+K C +F ++ + TV + S
Sbjct: 227 IEEFKIEPYWKIKVMDIRDNISVEFKWERGKLFEKLPCEIFLDICLEQPNATVQKISSKP 286
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
SK +P L+T+EL + S L + M+IAE+LYTQG +SYPRTET +P+ +L++
Sbjct: 287 TSKWRPLPLDTIELEKQGSRKLNLNAKEIMRIAEKLYTQGLISYPRTETNIFPKELNLIS 346
Query: 348 VLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDY 406
++ QQ ++P WG+ +++L G++ PRKGK HPPI P K L+G+ ++Y++
Sbjct: 347 LVNQQINNPAWGNFAQQLLEKGVN-PRKGKKSDQAHPPIHPIKYC--DNLNGNEAKVYEF 403
Query: 407 IVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKP 466
+VRHF+ L + + Q + + +A E F ++ + V + + I +++
Sbjct: 404 VVRHFLACLSSNAIGHQVIVEIDIAGEKFNANGLQVIEKNYLDVYIYEKWNEQKIHNYRE 463
Query: 467 GDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSG 526
G + S++M+E KT+PP LTE++LI+LM+KHGIGTDA+ HI+ I R YV +
Sbjct: 464 GQVFKPTSIEMIEEKTSPPQLLTEADLITLMDKHGIGTDATHAEHIDTIKSRQYVGLVDE 523
Query: 527 RRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
+ L+P LGI LV GY + ++ +P +R+
Sbjct: 524 KYLIPGKLGIGLVLGYDNMGFQMSKPGLRA 553
>gi|340724036|ref|XP_003400391.1| PREDICTED: DNA topoisomerase 3-alpha-like [Bombus terrestris]
Length = 1043
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 204/526 (38%), Positives = 302/526 (57%), Gaps = 15/526 (2%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR-EATPKLK 95
++E+ L+ MTSV GH++ +F Y W PL LF P K+ +K
Sbjct: 70 IYEFNSYLWNQNCEMVMTSVSGHLLSYEFVGAYRKWQGCHPLSLFDAPIIKQCPEENSIK 129
Query: 96 LPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKD 155
+ L E + C L++W DCD+EGENI FE+++ V H I N ++RA+FS IT
Sbjct: 130 IKKSLEREVQKCGALIIWTDCDREGENIGFEIIQ-VCHAIKSNI--RIYRAKFSEITQAS 186
Query: 156 IKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYG 211
+ A+ NL +PN + +VD R ELDLRIG AFTR+QT + F D+ LISYG
Sbjct: 187 VNRALQNLCEPNKAISDAVDVRSELDLRIGAAFTRFQTLRLKQVFPRTLADM---LISYG 243
Query: 212 PCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKA 271
CQ PTLGF VER I+ FK EPYW + + + ++V W+RG +F+K C VF
Sbjct: 244 SCQFPTLGFVVERFLAIKRFKSEPYWKIKVMDIRDNISVEFRWARGTLFEKLPCEVFLDI 303
Query: 272 VEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSY 331
++ TV V S K+K +P L+T+EL + S L + M+IAE+LYTQG +SY
Sbjct: 304 CLEQPMATVKKVLSKPKNKWRPLPLDTIELEKQGSRKLHLSAKDTMRIAEKLYTQGLISY 363
Query: 332 PRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKL 390
PRTET +P+ +LV ++ QQ ++ WG+ +++L G++ PR+GK HPPI PTK
Sbjct: 364 PRTETNIFPKELNLVPLVNQQVNNSAWGNFAQQLLEKGLT-PRQGKKSDQAHPPIHPTKY 422
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
L+G+ ++Y+++VRHF+ L D V + + +A E F ++ + V
Sbjct: 423 T--DGLNGNEAKVYEFVVRHFLACLSCDAVGQETTVEIDIAGEKFAANGLQIIEKNYLNV 480
Query: 451 MTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPV 510
+ ++ I ++ G + S+ MVE KT PP LTE++LISLM+K+GIGTDA+
Sbjct: 481 YIYENWNDKEIHIYQEGQVFQPTSIDMVEEKTCPPQLLTEADLISLMDKYGIGTDATHAE 540
Query: 511 HINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
HI+ I R+YV + G+ L+P LGI LV GY + E+ +P +R+
Sbjct: 541 HIDTIKSRHYVGLIDGKHLIPGKLGIGLVMGYDNMGFEMSKPNLRA 586
>gi|301612786|ref|XP_002935889.1| PREDICTED: DNA topoisomerase 3-alpha [Xenopus (Silurana)
tropicalis]
Length = 1021
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/522 (38%), Positives = 296/522 (56%), Gaps = 7/522 (1%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ LFG V MTSV GH++ LDF W +P+ LF +K + +
Sbjct: 75 IYEYEYHLFGKDVTVVMTSVSGHLLALDFQDHMKKWHSCNPVSLFEAEVQKYCPDDFVNI 134
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L E + C+ L++W DCD+EGENI FE++ + ++ V+RARFS IT + I
Sbjct: 135 KRTLEREVRQCQALIIWTDCDREGENIGFEIIHVCK---SVKPNLQVFRARFSEITPRSI 191
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQT 215
+ A +LV+P+ + +VD R ELDLRIG AFTR+QT Q + L LISYG CQ
Sbjct: 192 RMACEHLVQPDQNISDAVDVRMELDLRIGAAFTRFQTLRLQKMFPSVLSNQLISYGSCQF 251
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKE 275
PTLGF VER I+ F PE ++ + +T V +W R +F+ + C V ++ ++
Sbjct: 252 PTLGFVVERFKAIQAFIPETFYKIKVTHEHEDGLVEFSWKRNRLFNHTACLVLYQICMED 311
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
TV++V S KSK +P AL+TVEL ++AS L +G M++AE+LYTQG++SYPRTE
Sbjct: 312 PMATVMEVGSKPKSKWRPVALDTVELEKLASRKLKIGAKETMKVAEKLYTQGFISYPRTE 371
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRT 394
T +P++ +L +++ QQ WG + +L G PR G HPPI PTK
Sbjct: 372 TNIFPKDLNLTSLVEQQTHDHQWGGFAQRILERGGPTPRNGNKTDQAHPPIHPTKYT--N 429
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
L G+ R+Y++IVRHF+ D + + +A E F ++ + V +
Sbjct: 430 SLQGNEQRIYEFIVRHFLACCSQDAQGQETTVEIDIAAERFVAHGLMIIARNYLDVYPYD 489
Query: 455 AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINN 514
+ IP ++ G +V+MV+ +T+PP LTE++LISLMEKHGIGTDA+ HI
Sbjct: 490 KWNTKIIPVYEMGARFQPSTVEMVDGETSPPQLLTEADLISLMEKHGIGTDATHAEHIET 549
Query: 515 ICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
I R YV +T +R +P LG+ LV GY + E+ +P +R+
Sbjct: 550 IKSRMYVGLTPEQRFLPGELGMGLVEGYDSMGFEMSKPDLRA 591
>gi|427782477|gb|JAA56690.1| Putative dna topoisomerase iii beta [Rhipicephalus pulchellus]
Length = 669
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 207/537 (38%), Positives = 299/537 (55%), Gaps = 14/537 (2%)
Query: 28 LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCP 84
QR G ++E+ +F ++ MTSV GH++ LDF S Y W P ELF P
Sbjct: 25 FQRREGLSKYNKIYEFDYRIFNNMCKMVMTSVSGHLLNLDFVSGYRKWHSCAPSELFDAP 84
Query: 85 TEKREATPKLKL-PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTV 143
+ K +L L E + C+ L++W DCD+EGENI FE++ R + V
Sbjct: 85 VAEICTDQKYELIKQTLEREVRYCDTLIIWTDCDREGENIGFEIIGVCR---KVKPNLRV 141
Query: 144 WRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKY-GD 202
+RARFS IT + A+ NL P+ +V R+ELDLRIG AFTR QT + ++ +
Sbjct: 142 YRARFSEITPAAVTRAVANLTDPDPRLNAAVYVRRELDLRIGAAFTRLQTLRLKREFPQE 201
Query: 203 LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDK 262
L L+SYG CQ PTLGF VER+ I F PEP+W +++ + +G+ +W R +FD
Sbjct: 202 LGDRLVSYGSCQFPTLGFVVERYRAILNFVPEPFWKIEMNHSKDGIKAEFSWKRHRLFDY 261
Query: 263 STCNVFFKAV--EKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
C + ++ VV+V+S KSK +PQ ++TVEL ++AS L M MQ+A
Sbjct: 262 HVCFLLYERCLHGNPPQAKVVEVKSKPKSKWRPQPMDTVELEKLASRKLRMSAKDTMQVA 321
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG 380
E+LYT G++SYPRTETT++P + +L ++ Q P WGD R +L +G++ PR+G
Sbjct: 322 EKLYTDGFISYPRTETTKFPPDLNLRPLVEAQAQDPRWGDFARRLLQDGLT-PRQGNKTD 380
Query: 381 D-HPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA 439
HPPI P K A LDG+A R+Y+ +VRHF+ L D + + + E F
Sbjct: 381 QAHPPIHPVKSAP--GLDGNAKRVYELVVRHFLACLSKDAEGKETTVEVDLNGERFIATG 438
Query: 440 KYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
+ + V + + IP ++ G+ SVKM E +TTPP L E++LI+LMEK
Sbjct: 439 LVIFARNYLEVYIYDKWNGKEIPSYQEGECFVPDSVKMAEGETTPPPLLREADLIALMEK 498
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
HGIGTDA+ HI + R YV +T LVP LG+ LV GY + E+ +P +R+
Sbjct: 499 HGIGTDATHAEHIETVKNRLYVALTGDGYLVPGELGMGLVEGYDSMGLEMSKPHLRA 555
>gi|345487699|ref|XP_001605592.2| PREDICTED: DNA topoisomerase 3-alpha-like [Nasonia vitripennis]
Length = 1138
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 206/526 (39%), Positives = 299/526 (56%), Gaps = 15/526 (2%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR-EATPKLK 95
++E+ L+ MTSV GH++ +FT Y W PL LF P K+ + K
Sbjct: 81 IYEFQSRLWNKDCQMIMTSVSGHLLNYEFTGAYRKWYGCPPLSLFEAPVVKQCQQDNYEK 140
Query: 96 LPAFLANEAKDCEFLVLWLDCDKEGENICFEVME---AVRHQININSPKTVWRARFSAIT 152
+ + E + C L++W DCD+EGENI FE+++ AV+ I V+RA+FS IT
Sbjct: 141 IKKTIEREVRSCSALIIWTDCDREGENIGFEIIQVCQAVKPNIR------VYRAKFSEIT 194
Query: 153 DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKY-GDLDASLISYG 211
I A+ +L +PN + +VD R ELDLRIG AFTR+QT Q + +L LISYG
Sbjct: 195 QISIDRALQSLEEPNKAISDAVDVRSELDLRIGAAFTRFQTMRLQKAFPRNLADMLISYG 254
Query: 212 PCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKA 271
PCQ PTLGF VER I F+PEPYW L +T N + V W+R +F+K C VF
Sbjct: 255 PCQFPTLGFVVERFLAIERFEPEPYWKLKVTHLQNELNVEFRWARNRLFEKLPCEVFLDI 314
Query: 272 VEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSY 331
++ TV V + KSK +P L+T+EL + S L + MQIAE+LYT G++SY
Sbjct: 315 CQENPQATVEKVTAKPKSKWRPLPLDTIELEKQGSRKLRLSAKETMQIAEKLYTGGFISY 374
Query: 332 PRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKL 390
PRTET +P+ +L +++QQ ++ DWG + VL GI+ PR+GK HPPI PTK
Sbjct: 375 PRTETNIFPKEMNLSTLVQQQTANGDWGGFAQRVLDEGIT-PRQGKKSDQAHPPIHPTKF 433
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
L G+ R+Y+Y+VRHF+ L + + + + +A E F +L + V
Sbjct: 434 T--DTLRGNEARVYEYVVRHFLACLSKNAEGHETIVEIDIAGEKFVATGLQILAKNYLEV 491
Query: 451 MTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPV 510
+ + I ++ G S++M+E T+PP+ LTE++LI+LM+KHGIGTDA+
Sbjct: 492 FIYEKWNAKEIHIYERGQTFMPTSIEMLEETTSPPNLLTEADLIALMDKHGIGTDATHAE 551
Query: 511 HINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
HI I R YV + + L+P LGI LV GY ++ ++ +P +R+
Sbjct: 552 HIETIKSRQYVGLRDNKYLIPGKLGIGLVMGYDRMGFQMSKPHLRA 597
>gi|242014828|ref|XP_002428087.1| DNA topoisomerase 3-alpha, putative [Pediculus humanus corporis]
gi|212512606|gb|EEB15349.1| DNA topoisomerase 3-alpha, putative [Pediculus humanus corporis]
Length = 901
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 202/523 (38%), Positives = 299/523 (57%), Gaps = 10/523 (1%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ LF MTSV GH++ F + NW DP LF+ P K A K
Sbjct: 37 IYEFEFKLFNQNCKMVMTSVSGHLLNYCFPPTHKNWSTTDPSSLFTVPVNKFCAKENFKT 96
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRH-QININSPKTVWRARFSAITDKD 155
L NE K C+ L++W DCD+EGENI FE+++ + + NI ++RA+FS IT
Sbjct: 97 QNNLKNEVKYCDTLIIWTDCDREGENIGFEIIDVCKKVKPNI----KIYRAKFSEITSAS 152
Query: 156 IKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQ 214
+ A+ NL PN + +VD R ELDLRIG AFTR+Q+ + Q K+ D ++++SYG CQ
Sbjct: 153 VMRAINNLEMPNKSLSDAVDVRMELDLRIGAAFTRFQSLYLQKKFPDNFKSTVVSYGSCQ 212
Query: 215 TPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCNVFFKAVE 273
PTLGF VER I F EP+W +++ N N + V W R +FDKS C V +
Sbjct: 213 FPTLGFVVERFKNISQFISEPFWRIEVKDNSNKNLIVDFNWERNRMFDKSCCEVLYDKCI 272
Query: 274 KEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333
+ V+ V S KSK +P+ L+TVEL ++AS L + A++ AE+LYTQGY+SYPR
Sbjct: 273 ESNLAKVIKVDSKPKSKYRPKPLDTVELEKLASKKLKINAKLALKTAEKLYTQGYISYPR 332
Query: 334 TETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR 393
TET +P+ DL ++++Q + +WG+ +VL +G + + K HPPI P K A
Sbjct: 333 TETNIFPKELDLRPLVQRQTTDSNWGEFALKVLVDGPNPNQGTKSDQAHPPIHPIKYA-- 390
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
+ L G +Y+ IVRHF+ L + + + +A+E+FT + + + V +
Sbjct: 391 SNLTGVEKNIYELIVRHFLACLSKNAEGIETAVEIDLANEIFTAKGLMITARNYLDVYPY 450
Query: 454 SAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
+ I + GD+ +V +VE KT PP+ LTE++LI+LMEKHGIGTDA+ HI
Sbjct: 451 DVWNAKEINLYNVGDVFK-PAVSLVEGKTNPPELLTEADLIALMEKHGIGTDATHADHIE 509
Query: 514 NICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
I R YV + + + VP +LG+ LV GY + E+ +P +R+
Sbjct: 510 TIKARFYVGLKNDKYFVPRTLGMGLVEGYNNVGFEMAKPNLRA 552
>gi|432871570|ref|XP_004071982.1| PREDICTED: DNA topoisomerase 3-alpha-like [Oryzias latipes]
Length = 987
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 202/523 (38%), Positives = 298/523 (56%), Gaps = 8/523 (1%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ LFG V MTSV GH++ L+F + + W +P+ LF EK + +
Sbjct: 88 IYEYEYFLFGQNVTVTMTSVSGHLLALEFKAPFQKWHSCNPVMLFDAEVEKYCPDNMIPI 147
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L E + C+ LV+W DCD+EGENI FEV++ + + V+RA+FS IT I
Sbjct: 148 KRTLEKEVRQCQALVIWTDCDREGENIGFEVIDVCKA---VKPNLQVFRAKFSEITPASI 204
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQT 215
+ A L++P+ + +VD RQELDLRIG +FTR+QT Q + + L L+SYG CQ
Sbjct: 205 RRACETLIEPDANISDAVDVRQELDLRIGASFTRFQTLRLQKIFPESLANQLVSYGSCQF 264
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKE 275
PTLGF VER I+ F PE ++ + + L V +W R +F+ + C V ++ ++
Sbjct: 265 PTLGFVVERFKAIKAFIPETFYKIKVLHTLEDDTVEFSWKRNRLFNHTCCLVLYQICMED 324
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
TV V S KSK +P L+TVEL ++AS L + M+IAE+LYTQG++SYPRTE
Sbjct: 325 PIATVTSVTSKPKSKWRPLPLDTVELEKLASRKLRINAKETMKIAEKLYTQGFISYPRTE 384
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSN-GISKPRKGKDVGD-HPPITPTKLATR 393
T +P N L ++ QQ S WG + VL G PR+GK HPPI PTK
Sbjct: 385 TNIFPANLVLAPLVEQQTHSSTWGTFAQRVLDQPGGPNPRQGKKSDQAHPPIHPTKYT-- 442
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
+ L G+ R+Y++IVRHF+ + D + + V +A E F+ ++ + V +
Sbjct: 443 SSLQGNEARVYEFIVRHFLACVSQDALGQETVVDIDIAQEKFSTSGLMIIARNYLDVYPY 502
Query: 454 SAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
+ IP ++ +++MV+ +T+PP LTE++LISLMEKHGIGTDA+ HI
Sbjct: 503 DKWNAKVIPVYEEDSQFQPSAIEMVDGQTSPPQLLTEADLISLMEKHGIGTDATHAEHIE 562
Query: 514 NICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
I R YV +T+ +R +P LG+ LV GY + E+ +P +RS
Sbjct: 563 TIKSRMYVGLTADQRFLPGELGMGLVEGYNSMGYEMSKPNLRS 605
>gi|170039894|ref|XP_001847754.1| DNA topoisomerase 3-alpha [Culex quinquefasciatus]
gi|167863475|gb|EDS26858.1| DNA topoisomerase 3-alpha [Culex quinquefasciatus]
Length = 992
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 202/526 (38%), Positives = 292/526 (55%), Gaps = 14/526 (2%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ L G V MTSV GH++ +F + W +P +LF P K K+
Sbjct: 37 IYEFDYNLRGQQVKMVMTSVSGHLLNFEFLPSFRGWHSCNPEQLFDAPVRKGCTESAEKI 96
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVME---AVRHQININSPKTVWRARFSAITD 153
L E + C LV+W DCD+EGENI FE++E AV+ QI V RA+FS IT
Sbjct: 97 KRTLEREIRGCGALVIWTDCDREGENIGFEIIEVCRAVKPQIK------VLRAKFSEITA 150
Query: 154 KDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGP 212
IK A+ NL P+ ++ +V+ R ELDLRIG AFTR+QT Q + D + SL+SYG
Sbjct: 151 ASIKRAVDNLAAPDELQSEAVNVRSELDLRIGAAFTRFQTLRLQNVFPDKISNSLVSYGS 210
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAV 272
CQ PTLGF +R+ +I F P+ +W + L + + V WSR +FDK C +
Sbjct: 211 CQIPTLGFVAQRYKEIENFIPQAFWKIKLNHTIGELTVEFNWSRNRLFDKQCCEAYLMLC 270
Query: 273 EKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYP 332
+ E+ +V V + KSK +P L+TVEL ++ S L + M IAE+LYTQG +SYP
Sbjct: 271 QSEQMAKIVSVTNKPKSKWRPTPLDTVELEKLGSRKLKLNAKTTMTIAEKLYTQGIISYP 330
Query: 333 RTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLA 391
RTET + + L ++ Q P+WGD ++V+ G PR GK HPPI PTK
Sbjct: 331 RTETNMFTHDMKLAPLVEMQAGHPEWGDFAQKVMQWG-PNPRNGKKSDQAHPPIHPTKFV 389
Query: 392 TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
T L GD R+Y+ +VRHF+ + D V + + +A+E FT +L + V
Sbjct: 390 --TNLSGDEKRVYELVVRHFLACVSKDAVGAETIVNAVLAEEEFTASGLCILERNYLEVY 447
Query: 452 TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
+ ++ I ++ G+ + + E TT P+ LTE++LI+LMEKHGIGTDA+ H
Sbjct: 448 PYDRWNSKEIHAYQMGNTFEPTELGLHEGSTTAPNMLTEADLIALMEKHGIGTDATHAEH 507
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
IN I +R Y+ LVP +LG+ LV GY+ ++ L +P +R+
Sbjct: 508 INTIKERGYIGEADRGFLVPGTLGMGLVEGYESMELPLAQPKLRAG 553
>gi|357613303|gb|EHJ68426.1| prokaryotic DNA topoisomerase [Danaus plexippus]
Length = 734
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 205/526 (38%), Positives = 296/526 (56%), Gaps = 11/526 (2%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNN--WDKVDPLELFSCPTEKREATPKL 94
++E+ + G MTSV GH++ +F +K + WD DP +LF P K
Sbjct: 37 IYEFDAEVMGQRSKMVMTSVSGHLLNYEFVNKNESKKWDAYDPKKLFYEPVRKCCPDNYK 96
Query: 95 KLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRH-QININSPKTVWRARFSAITD 153
+ L E K C+ L++W DCD+EGENI FE++E ++ Q NIN ++RA+FS IT
Sbjct: 97 NIKETLQREIKGCDGLIIWTDCDREGENIGFEIIEVCKNIQRNIN----IYRAKFSEITA 152
Query: 154 KDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKY-GDLDASLISYGP 212
+ ++ A+ NL P+ +++VD RQELDLRIG FTR+QT Q + ++ ++S+G
Sbjct: 153 QSVRRALSNLGVPDEHTSKAVDIRQELDLRIGAVFTRFQTVKIQSSFQNNVSNKIVSFGS 212
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAV 272
CQ PTLGF VER I F PE +W L + L + W R IFDK CN+F+
Sbjct: 213 CQFPTLGFVVERWRAIENFIPEKFWKLQVNHTLGNESTDFLWDRVKIFDKDICNIFYNMC 272
Query: 273 EKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYP 332
+ K TVV+V++ K+K +P L+TVEL + AS L + M+IAE+LYT G +SYP
Sbjct: 273 LENKTATVVNVETKPKTKWRPLPLDTVELEKQASRLLKINAKTTMKIAEKLYTAGIISYP 332
Query: 333 RTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLAT 392
RTET Q+ + +LV ++ + P WG + VLS G + R K HPPI PTK
Sbjct: 333 RTETNQFSNDINLVKLIELHKDDPSWGTFAQNVLSQGPNPRRGNKSDQAHPPIHPTKYV- 391
Query: 393 RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
T L R+Y++IVR F+ D V + + +VADE F + + V
Sbjct: 392 -TNLVNMERRVYEFIVRTFLACCSKDAVGKETTVRLTVADEGFHASGLIVTERNYLDVYP 450
Query: 453 WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHI 512
+ ++ I D++ GD V+M+E +T+PP+ LTE+ LI+LMEKHGIGTDA+ HI
Sbjct: 451 YDKWTSKHIHDYQVGDTFTATKVEMIESETSPPELLTEANLITLMEKHGIGTDATHADHI 510
Query: 513 NNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAY 558
I RNYV V G + PT LG LV GY + + +P +R+ +
Sbjct: 511 ETIKIRNYV-VIEGNKFKPTELGRGLVEGYDMLSLPMSKPHLRANF 555
>gi|147906574|ref|NP_001085699.1| topoisomerase (DNA) III alpha [Xenopus laevis]
gi|49115195|gb|AAH73221.1| MGC80537 protein [Xenopus laevis]
Length = 1022
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 205/563 (36%), Positives = 314/563 (55%), Gaps = 12/563 (2%)
Query: 1 MHLRVKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTS 55
+ + V+K++ +E A + L++ ++R G ++E+ LFG V MTS
Sbjct: 34 LRIPVQKVLCVAEKNDAAKGIADLMSNSRMRRREGFSKFNKIYEYEYHLFGKDVTVVMTS 93
Query: 56 VCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLD 115
V GH++ L+F W +P+ LF +K + + L E + C+ L++W D
Sbjct: 94 VSGHLLALEFMDHMKKWHSCNPVSLFEAEVQKYCPDDFVNIKRTLEREVRQCQALIIWTD 153
Query: 116 CDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVD 175
CD+EGENI FE++ + ++ V+RARFS IT + I+ A +LV+P+ +VD
Sbjct: 154 CDREGENIGFEIIHVCK---SVKPNLQVFRARFSEITPRSIRMACEHLVQPDQNINDAVD 210
Query: 176 ARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPE 234
R ELDLRIG AFTR+QT Q + L LISYG CQ PTLGF VER I+ F PE
Sbjct: 211 VRTELDLRIGAAFTRFQTLRLQKIFPSVLSNQLISYGSCQFPTLGFVVERFKAIQAFIPE 270
Query: 235 PYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQ 294
++ + +T V +W R +F+ + C V ++ ++ TV++V S KSK +P
Sbjct: 271 TFYKIKVTHEHEDGLVEFSWKRNRLFNHTACLVLYQICMEDPMATVMEVGSKPKSKWRPV 330
Query: 295 ALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQES 354
AL+TVEL ++AS L +G M+ AE+LYTQG++SYPRTET +P++ +L +++ QQ
Sbjct: 331 ALDTVELEKLASRKLKIGAKETMKTAEKLYTQGFISYPRTETNIFPKDLNLTSLVEQQTH 390
Query: 355 SPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVRHFIG 413
P WG + +L G PR G HPPI PTK L G+ R+Y++IVRHF+
Sbjct: 391 DPQWGGFAQRILERGGPTPRNGNKTDQAHPPIHPTKYT--NNLQGNEQRIYEFIVRHFLA 448
Query: 414 TLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQ 473
D + + +A E F ++ + V + + IP ++ G
Sbjct: 449 CCSQDAQGQETTVEIDIAAERFVAHGLMIIARNYLDVYPYDKWNTKIIPVYEMGAQFQPT 508
Query: 474 SVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTS 533
+V+MV+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R+YV +T +R +P
Sbjct: 509 TVEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKSRSYVGLTPEQRFLPGE 568
Query: 534 LGIVLVHGYQKIDRELVEPTMRS 556
LG+ LV GY + ++ +P +R+
Sbjct: 569 LGMGLVEGYDSMGFQMSKPDLRA 591
>gi|334332664|ref|XP_003341626.1| PREDICTED: DNA topoisomerase 3-alpha [Monodelphis domestica]
Length = 976
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 202/510 (39%), Positives = 290/510 (56%), Gaps = 7/510 (1%)
Query: 49 VLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCE 108
V MTSV GH++ DF + W +PL LF EK + + L E + C+
Sbjct: 71 VTMVMTSVSGHLLAHDFQMPFRKWQSCNPLVLFEAQIEKYCPENFVDIKRTLEKEVQQCQ 130
Query: 109 FLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNI 168
LV+W DCD+EGENI FE++ + + V+RARFS IT+ +K A +L +P+
Sbjct: 131 SLVIWTDCDREGENIGFEIIHVCK---AVKPNLRVFRARFSEITEHAVKTACQHLTEPDQ 187
Query: 169 FEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDK 227
+ +VD RQELDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER
Sbjct: 188 RVSDAVDVRQELDLRIGAAFTRFQTLRLQKIFPEVLAEQLISYGSCQFPTLGFVVERFKA 247
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
I+ F PE + + +T V +W R +F+ + C V ++ ++ TVV+V S
Sbjct: 248 IQAFVPETFHKIKVTHEHEDGLVDFSWKRHRLFNHTACLVLYQMCMEDPVATVVEVGSKP 307
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
KS+ +PQ L+TVEL ++AS L + M+IAE+LYTQGY+SYPRTET +P++ +L A
Sbjct: 308 KSRWRPQPLDTVELEKLASRKLKINAKETMKIAEKLYTQGYISYPRTETNIFPKDLNLTA 367
Query: 348 VLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDY 406
+++QQ WG + +L G PR GK HPPI PTK L G+ RLY++
Sbjct: 368 LVQQQIHDQQWGAFAQRILDRGGPTPRNGKKSDQAHPPIHPTKYT--CNLQGNEQRLYEF 425
Query: 407 IVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKP 466
IVRHF+ D + + +A E F +L + V + ++ IP ++
Sbjct: 426 IVRHFLACCSEDAQGQETTVEIDIAQERFVAHGLMILAKNYLEVYLYDRWSDKIIPVYEK 485
Query: 467 GDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSG 526
G +V+MV+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T
Sbjct: 486 GSRFQPTTVEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKSRMYVGLTPD 545
Query: 527 RRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
+R +P LG+ LV GY + E+ +P +R+
Sbjct: 546 KRFLPGHLGMGLVEGYDSMGYEMSKPDLRA 575
>gi|426237677|ref|XP_004012784.1| PREDICTED: DNA topoisomerase 3-alpha [Ovis aries]
Length = 1002
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 214/559 (38%), Positives = 307/559 (54%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGAC---SVHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L G V MTSV GH
Sbjct: 33 VRKILCVAEKNDAAKGIADLLSGGRMRRREGLSRFNKIYEFDYHLCGQNVTMVMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L EA+ C+ LV+W DCD+E
Sbjct: 93 LLAHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLEREARQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FEV+ + + V RARFS IT + ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEVIHVCK---AVKPSLQVLRARFSEITARAVRTACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGC-AFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG R + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGEEGAVRVGGQGSGAHPAVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHK 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V +W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IRVTHDHRDGVVEFSWKRHRLFNHTACLVLYQLCMEDPRATVVEVRSKAKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P++ DL A++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLDLAALVEQQIPDPRW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G R +L G PR G K HPPI PTK L GD RLY+ IVRHF+
Sbjct: 390 GAFARNILERGGPTPRNGNKSDQAHPPIHPTKYT--DSLQGDEQRLYELIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + + E F +L + V + ++++P +K G +V+M
Sbjct: 448 DAQGQETTVEIDIVQERFVAHGLMILARNYLDVYPYDRWSDKTLPVYKEGTYFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T +R +P LG+
Sbjct: 508 VDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>gi|332019151|gb|EGI59663.1| DNA topoisomerase 3-alpha [Acromyrmex echinatior]
Length = 1005
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 202/510 (39%), Positives = 294/510 (57%), Gaps = 15/510 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK-LPAFLANEAKDCEFLV 111
MTSV GH++G DFT+ Y W PL LF P KR + + L EA+ C L+
Sbjct: 3 MTSVSGHLLGYDFTNAYRKWHSCHPLNLFDAPVSKRCVEENHENIKRTLEREARFCNALI 62
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
+W DCD+EGENI FE+++ + I V+RA+FS IT ++ A+ NLV+P+ +
Sbjct: 63 IWTDCDREGENIGFEIIQVCQA---IKPNIRVYRAKFSEITRSSVERALQNLVQPDKAMS 119
Query: 172 RSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYGPCQTPTLGFCVERHDK 227
+VD R ELDLRIG AFTR+QT K F GDL LISYG CQ PTLGF VER
Sbjct: 120 DAVDVRSELDLRIGAAFTRFQTLRLQKVFPNTLGDL---LISYGSCQFPTLGFVVERFLA 176
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
I FK EPYW L + + ++V W+R +F+K C +F ++ TV V
Sbjct: 177 IDRFKSEPYWKLKVMDDREEISVEFRWARVRLFEKMPCQIFLDMCLEQPEATVEKVTCKP 236
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
KSK +P L+T+EL + S L + M+IAERLYTQG++SYPRTET +P+ +L +
Sbjct: 237 KSKWRPLPLDTIELEKQGSRKLRINAKETMRIAERLYTQGFISYPRTETNIFPKELNLRS 296
Query: 348 VLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDY 406
++ QQ ++ +WG+ + +L +GI+ PR+GK HPPI P K L G+ ++Y++
Sbjct: 297 LVEQQVNNQEWGNFAQNLLESGIT-PRQGKKSDQAHPPIHPIKYT--DNLYGNEAKVYEF 353
Query: 407 IVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKP 466
+VRHF+ L + + + +A E F ++ + V + N+ I ++
Sbjct: 354 VVRHFLACLSKNAEGRETTVEIDIAGEKFKANGLEIITKNYLDVYIYEKWNNKQIHSYEQ 413
Query: 467 GDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSG 526
+ S+ MVE KT+ P+ LTE+ELI+LM+KHGIGTDA+ HI+ I R YV +T
Sbjct: 414 RQVFRPTSIDMVEEKTSAPNLLTEAELIALMDKHGIGTDATHADHIDTIKSRQYVGLTDT 473
Query: 527 RRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
+ +P LGI LV GY + ++ +P +R+
Sbjct: 474 QHFMPGKLGIGLVMGYDNMGFQMSKPHLRA 503
>gi|350420688|ref|XP_003492591.1| PREDICTED: DNA topoisomerase 3-alpha-like [Bombus impatiens]
Length = 1012
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 201/526 (38%), Positives = 299/526 (56%), Gaps = 15/526 (2%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR-EATPKLK 95
++E+ L+ MTSV GH++ +F Y W PL LF P K+ +K
Sbjct: 37 IYEFNSYLWNQNCEMIMTSVSGHLLNYEFVGAYRKWQGCHPLSLFDAPVIKQCSEENSVK 96
Query: 96 LPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKD 155
+ L E + C L++W DCD+EGENI FE+++ R I ++RA+FS IT
Sbjct: 97 IKKTLEREVQRCGALIIWTDCDREGENIGFEIIQVCRA---IKPNIHIYRAKFSEITQAS 153
Query: 156 IKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYG 211
+ A+ NL +PN + +VD R ELDLRIG AFTR+QT + F D+ LISYG
Sbjct: 154 VNRALQNLCEPNKAISDAVDVRSELDLRIGAAFTRFQTLRLKQVFPRTLADM---LISYG 210
Query: 212 PCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKA 271
CQ PTLGF VER I+ FK EPYW + + + ++V W+RG +F+K C VF
Sbjct: 211 SCQFPTLGFVVERFLAIKRFKSEPYWKIKVMDIRDNISVEFRWARGTLFEKLPCEVFLDI 270
Query: 272 VEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSY 331
++ TV V S K+K +P L+T+EL + S L + M+IAE+LYTQG +SY
Sbjct: 271 CLEQPMATVKKVLSKPKNKWRPLPLDTIELEKQGSRKLHLSAKDTMRIAEKLYTQGLISY 330
Query: 332 PRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKL 390
PRTET +P+ +LV ++ QQ S+ WG+ +++L G++ PR+GK HPPI P K
Sbjct: 331 PRTETNIFPKELNLVPLVNQQVSNSAWGNFAQQLLEKGLT-PRQGKKSDQAHPPIHPIKY 389
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
A L+G+ ++Y+++VRHF+ L D V + + +A E F ++ + V
Sbjct: 390 A--DGLNGNEAKVYEFVVRHFLACLSCDAVGQETTVEIDIAGEKFAANGLQIIEKNYLNV 447
Query: 451 MTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPV 510
+ ++ I ++ G + S+ MVE KT+PP LTE++LISLM+K+ IGTDA+
Sbjct: 448 YIYEKWNDKEIHIYQEGQVFQPTSIDMVEEKTSPPQLLTEADLISLMDKYSIGTDATHAE 507
Query: 511 HINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
HI+ I R+YV + + L+P LGI LV GY + E+ +P +R+
Sbjct: 508 HIDTIKSRHYVGLIDEKYLIPGKLGIGLVMGYDNMGFEMSKPNLRA 553
>gi|157116652|ref|XP_001658595.1| prokaryotic DNA topoisomerase [Aedes aegypti]
gi|108876378|gb|EAT40603.1| AAEL007683-PA [Aedes aegypti]
Length = 1021
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 206/560 (36%), Positives = 304/560 (54%), Gaps = 13/560 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLT--PLQRMNGAC---SVHEWVGPLFGDLVLFKMTSVCGH 59
V K + +E A ++ LL+ QR G ++E+ + G V MTSV GH
Sbjct: 24 VMKYLNVAEKNDAAKNIAGLLSRGSSQRREGYSPYNKIYEFSYNIRGQPVQMVMTSVSGH 83
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ +F + W +P +LF P K K+ L E + C+ LV+W DCD+E
Sbjct: 84 LLNYEFLPSFRGWHSCNPEQLFDAPVRKSCTENMGKIKQTLEREVRGCQTLVIWTDCDRE 143
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++E R I V RA+FS IT +K A+ NL P+ ++ +V+ R E
Sbjct: 144 GENIGFEIIEVCRA---IKPGIRVLRAKFSEITAASVKRAVENLAAPDELQSEAVNVRSE 200
Query: 180 LDLRIGCAFTRYQTKFFQGKY-GDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + +L+SYG CQ PTLGF R+ +I F P+ +W
Sbjct: 201 LDLRIGAAFTRFQTLRLQNVFPAKIVNNLVSYGSCQIPTLGFVAHRYKEIEKFIPQEFWK 260
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ L ++ + V W+R +FDK C + + E V +V V + K+K +P L+T
Sbjct: 261 IKLNHTIDELTVEFNWARNRLFDKQCCEAYLMLCQSEPLVKIVSVTNKPKNKWRPTPLDT 320
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++ S L + M IAE+LYTQG +SYPRTET + + L ++ Q +P+W
Sbjct: 321 VELEKLGSRKLKINAKQTMTIAEKLYTQGIISYPRTETNMFTNDMKLAPLVEMQTDNPEW 380
Query: 359 GDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G ++VL G PR GK HPPI PTK + L GD R+Y+ +VRHF+ +
Sbjct: 381 GGFAQKVLQWG-PNPRNGKKSDQAHPPIHPTKYV--SNLTGDEKRIYELVVRHFLACISK 437
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D V ++ V +ADE FT +L + V + + I ++ G + +
Sbjct: 438 DAVGSETVVNAVLADEEFTASGLCILERNYLEVYPYDRWNSREIHPYQVGHTFEPTELSL 497
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
+ TT P+ LTE++LI+LMEKHGIGTDA+ HIN I +R Y+ GR LVP +LG+
Sbjct: 498 HQGSTTAPNMLTEADLIALMEKHGIGTDATHAEHINTIKERGYIGEAEGRYLVPGTLGMG 557
Query: 538 LVHGYQKIDRELVEPTMRSA 557
LV GY+ ++ L +P +R+
Sbjct: 558 LVEGYEAMELTLAQPELRAG 577
>gi|321463458|gb|EFX74474.1| hypothetical protein DAPPUDRAFT_324341 [Daphnia pulex]
Length = 1025
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 206/526 (39%), Positives = 295/526 (56%), Gaps = 14/526 (2%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ LF V +TSV GH++ DF Y W V+P+ LF P K A +
Sbjct: 40 IYEFEHNLFNQNVKMSVTSVSGHLLSSDFVGNYKKWQGVNPVTLFEAPIHKFVAEDYQNI 99
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVM---EAVRHQININSPKTVWRARFSAITD 153
L E K ++L++W DCD+EGENI +EV+ +A++ I V+RA+FS IT
Sbjct: 100 KRTLEEETKKSKYLIIWTDCDREGENIGYEVITVCQAIKPNIQ------VFRAKFSEITY 153
Query: 154 KDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKY-GDLDASLISYGP 212
+ I A+ NL PN + +VD R ELDLRIG AFTR+QT Q + G L SLISYG
Sbjct: 154 QSIARALQNLGPPNKNVSDAVDVRIELDLRIGAAFTRFQTLRLQKVFPGSLGQSLISYGS 213
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVA-VSVTWSRGHIFDKSTCNVFFKA 271
CQ PTLGF VER+ I+ F E +W L + LN V W R H+FD++ + +
Sbjct: 214 CQFPTLGFIVERYKAIQDFVRENFWKLKVVWELNEEERVEFLWKRHHLFDQTVVQILLEK 273
Query: 272 VEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSY 331
++ ++ VQ+ KSK +P L+TVEL ++AS L + M+IAE+LYTQG++SY
Sbjct: 274 CQENPEAEIIKVQTKNKSKWRPLPLDTVELEKLASRKLRINAKETMKIAEKLYTQGFISY 333
Query: 332 PRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKL 390
PRTET +P+ DL +++ Q P WG + VL G++ PR+GK HPPI PTK
Sbjct: 334 PRTETNIFPKELDLTPLVQCQTVDPAWGGFAQRVLDEGLN-PRQGKKSDQAHPPIHPTKY 392
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
A + + +LY++IVRHF+ + D + VA+ + +E F ++ + V
Sbjct: 393 AGNLSNENER-KLYEFIVRHFLACVSKDAQGYETVAEIEIQEEGFVASGLQIVARNYLEV 451
Query: 451 MTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPV 510
+ + S+P G S+ M E +T+PP L+E++LISLMEKHGIGTDA+
Sbjct: 452 YPYERWSDRSLPQLNEGQRFIPTSITMDEGETSPPQLLSEADLISLMEKHGIGTDATHAD 511
Query: 511 HINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
HI I R Y V R +P SLG+ LV GY + L +P +R+
Sbjct: 512 HIETIKSRQYAGVQGDGRFLPCSLGMGLVQGYDAMGIALSKPNLRA 557
>gi|395836299|ref|XP_003791095.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha [Otolemur
garnettii]
Length = 1008
Score = 370 bits (950), Expect = e-99, Method: Compositional matrix adjust.
Identities = 217/567 (38%), Positives = 314/567 (55%), Gaps = 22/567 (3%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSSGRMRRREGLSKFNKIYEFDYHLYGQNVTMIMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMQFRKWQSCNPLVLFEAKIEKYCPENFVDIKKTLERETRQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ R + V RARFS IT + ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCR---AVKPSLQVLRARFSEITPRAVRMACENLTEPDERVSSAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPY-- 236
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEAFHR 269
Query: 237 ------WLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
+ D ++ NG S+ W +C ++F + TVV+V+S KSK
Sbjct: 270 IKVAAPYTKDGSVAWNGERCSL-WQGXDDAPTGSCFLYFPD-SXDPMATVVEVRSKPKSK 327
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
+PQAL+TVEL ++AS L + M+IAE+LYTQGY+SYPRTET +P + +L A++
Sbjct: 328 WRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTALVE 387
Query: 351 QQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVR 409
QQ P WG + +L G PR G K HPPI PTK + L GD RLY++IVR
Sbjct: 388 QQTQDPHWGAFAQSILERGGPTPRNGSKSDQAHPPIHPTKYTS--SLQGDEQRLYEFIVR 445
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDL 469
HF+ D + + +A E F + +L + V + ++ +P ++ G
Sbjct: 446 HFLACCSQDAQGQETSVEIDIARERFVAQGLMILARNYLDVYPYDRWSDKILPVYEQGSR 505
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRL 529
+V+MV+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T +R
Sbjct: 506 FQPSTVEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRF 565
Query: 530 VPTSLGIVLVHGYQKIDRELVEPTMRS 556
+P LG+ LV GY + E+ +P +R+
Sbjct: 566 LPGHLGMGLVEGYDSMGYEMSKPDLRA 592
>gi|410902017|ref|XP_003964491.1| PREDICTED: DNA topoisomerase 3-alpha-like [Takifugu rubripes]
Length = 967
Score = 370 bits (949), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 202/524 (38%), Positives = 301/524 (57%), Gaps = 10/524 (1%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ LFG V MTSV GH++GL+F + + W P+ LF EK +++
Sbjct: 45 IYEYEYHLFGQNVTVLMTSVSGHLLGLEFKTPFQKWHSCSPVLLFDAEVEKYCPENMVQI 104
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRH-QININSPKTVWRARFSAITDKD 155
L E K C+ L++W DCD+EGENI FE+++ + + NI V RA+FS IT
Sbjct: 105 KRTLEKEVKQCQLLIIWTDCDREGENIGFEIIDVCKAVKPNIQ----VLRAKFSEITPNS 160
Query: 156 IKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQ 214
I+ A L +P+ + +VD RQELDLRIG +FTR+QT Q + + L LISYG CQ
Sbjct: 161 IRRACDTLSEPDSKVSDAVDVRQELDLRIGASFTRFQTLRLQKIFPESLANQLISYGSCQ 220
Query: 215 TPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEK 274
PTLGF VER I++F PE ++ + + + V +W R +F+ + C V ++ +
Sbjct: 221 FPTLGFVVERFKAIQSFIPETFYKIKVLHEVEEDTVEFSWKRNRLFNHTACLVLYQICME 280
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRT 334
+ TV V S KSK +P L+TVE+ ++AS L + M+IAE+LYT+G++SYPRT
Sbjct: 281 DPIATVTSVTSKPKSKWRPLPLDTVEMEKLASRKLRISAKETMKIAEKLYTRGFISYPRT 340
Query: 335 ETTQYPENFDLVAVLRQQESSPDWGDHVREVLSN-GISKPRKGKDVGD-HPPITPTKLAT 392
ET +P N L ++ +Q S WG + VL G PR+GK HPPI PTK +
Sbjct: 341 ETNIFPPNLALGPLVEEQTQSSVWGAFAQRVLEQPGGPNPRQGKKSDQAHPPIHPTKHS- 399
Query: 393 RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
+ L G+ RLY++IVRHF+ + D + + V +A E F+ + + V
Sbjct: 400 -SSLQGNEGRLYEFIVRHFLACVSQDALGQETVVDVDIAQEKFSTSGLMITARNYLDVYP 458
Query: 453 WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHI 512
+ + IP ++ G +++MV+ +T+PP LTE++LI+LMEKHGIGTDA+ HI
Sbjct: 459 YDRWTTKLIPVYEQGSQFQPTAIEMVDGQTSPPQLLTEADLIALMEKHGIGTDATHAEHI 518
Query: 513 NNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
I R YV +TS +R +P LG+ LV GY + E+ +P +R+
Sbjct: 519 ETIKSRMYVGLTSDQRFLPGELGMGLVEGYNSMGYEMSKPNLRA 562
>gi|443692088|gb|ELT93762.1| hypothetical protein CAPTEDRAFT_193082 [Capitella teleta]
Length = 934
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 196/523 (37%), Positives = 301/523 (57%), Gaps = 9/523 (1%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ LF MTSV GH++G +F + + W +P+ LF P K +
Sbjct: 38 IYEFDYNLFNQNCTMSMTSVSGHLLGCEFEASHRKWHSCNPVSLFDAPIHKTCPENYKDI 97
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L EA+ CE LV+W DCD+EGENI FEV++ + V+RARFS +T +
Sbjct: 98 KRTLEREARGCEILVVWTDCDREGENIGFEVIQVC---TAVKPNMRVYRARFSEMTPGAV 154
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDA-SLISYGPCQT 215
A+ NL P+ + +VD RQELDLRIG +FTR+QT Q + ++ A LISYG CQ
Sbjct: 155 TRAIANLQPPDKNVSDAVDVRQELDLRIGASFTRFQTMRLQKVFPNVLADQLISYGSCQF 214
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVA-VSVTWSRGHIFDKSTCNVFFKAVEK 274
PTLGF VER+ +++ F PEP+W + ++ +L + +W RG +FD C V ++ V +
Sbjct: 215 PTLGFVVERYKQVQAFIPEPFWKIKVSHDLQDDGFIEFSWRRGRLFDYEACLVLYEHVIE 274
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRT 334
TV++V+ KSK +P AL+TVEL ++AS L + M+IAE+LYTQG++SYPRT
Sbjct: 275 NPLATVLEVKKKPKSKWRPVALDTVELEKLASRKLRINAKETMKIAEKLYTQGFISYPRT 334
Query: 335 ETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATR 393
ET +P++ +L +++QQ + DWG+ +L +G PR G HPPI PTK
Sbjct: 335 ETNIFPKDLNLRNLIQQQVNDQDWGEFAGHILEDG-PNPRNGNKTDQAHPPIHPTKYT-- 391
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
L G+ R+Y+++VRHF+ D + S+ DE F+ ++ + V +
Sbjct: 392 NGLQGNEKRVYEFVVRHFLACCSKDAQGQETTVDISINDEYFSASGLMIIARNYLDVYPY 451
Query: 454 SAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
+ +P + G ++++M + +T+ P LTE++LISLM+KHGIGTDA+ HI
Sbjct: 452 DKWTGKILPTMEEGAQFTPRTIEMNQGETSAPSLLTEADLISLMDKHGIGTDATHAEHIE 511
Query: 514 NICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
I R YV +T+ ++ +P LG+ LV GY + + +P +R+
Sbjct: 512 TIKARLYVGLTNDQKFIPGELGMGLVEGYDAMGFHMSKPHLRA 554
>gi|380021980|ref|XP_003694833.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha-like
[Apis florea]
Length = 1011
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 193/510 (37%), Positives = 291/510 (57%), Gaps = 15/510 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR-EATPKLKLPAFLANEAKDCEFLV 111
MTSV GH++ +F Y W PL LF P K+ +K+ L E + C L+
Sbjct: 53 MTSVSGHLLNCEFVGIYRKWQSCHPLSLFDAPVIKQCSQESSIKIKKTLEKEVQKCNALI 112
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
+W DCD+EGENI FE+++ R I ++RA+FS IT I ++ NL +P+ +
Sbjct: 113 IWTDCDREGENIGFEIIQVCRA---IKPNIRIYRAKFSEITQTSINRSLQNLCEPDKAVS 169
Query: 172 RSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYGPCQTPTLGFCVERHDK 227
+VD R ELDLRIG AFTR+QT K F D+ LISYG CQ PTLGF VER
Sbjct: 170 DAVDVRSELDLRIGAAFTRFQTLRLRKVFPTTLADM---LISYGSCQFPTLGFVVERFLA 226
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
I FK EP W + + + ++V W+RG +F+K C +F ++ + TV V S
Sbjct: 227 IEEFKIEPCWKIKVMDIRDNISVEFKWARGKLFEKLPCEIFLDICLEQPNATVQKVLSKP 286
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
SK +P L+T+EL + L + M+IAE+LYTQG +SYPRTET +P+ +L++
Sbjct: 287 TSKWRPLPLDTIELEKQGLRKLNLNAKETMRIAEKLYTQGLISYPRTETNIFPKELNLIS 346
Query: 348 VLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDY 406
++ QQ ++ WG+ +++L G++ PRKGK HPPI P K L+G+ ++Y++
Sbjct: 347 LVNQQVNNSAWGNFAQQLLEKGVN-PRKGKKSDQAHPPIHPIKYC--DTLNGNEAKVYEF 403
Query: 407 IVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKP 466
+VRHF+ L D + Q + + +A E F ++ + V + + I +++
Sbjct: 404 VVRHFLACLSSDAIGHQIIVEIDIAGEKFNANGLQVIEKNYLDVYIYEKWNEQEIHNYRE 463
Query: 467 GDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSG 526
G + S++MVE +T PP LTE++LI+LM+KHGIGTDA+ HI+ I R YV +
Sbjct: 464 GQVFKPTSIEMVEEETCPPQLLTEADLITLMDKHGIGTDATHAEHIDTIKSRQYVGLMDE 523
Query: 527 RRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
+ L+P LGI LV GY + ++ +P +R+
Sbjct: 524 KHLIPGKLGIGLVLGYDNMGFQMSKPGLRA 553
>gi|167390327|ref|XP_001739303.1| DNA topoisomerase 3-alpha [Entamoeba dispar SAW760]
gi|165897077|gb|EDR24345.1| DNA topoisomerase 3-alpha, putative [Entamoeba dispar SAW760]
Length = 607
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 185/506 (36%), Positives = 282/506 (55%), Gaps = 6/506 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+ G+DFT+ Y +W DP ELF+ P EK K+ L N AK C+ LVL
Sbjct: 55 VTSVAGHLKGIDFTTAYRSWGSCDPEELFTAPIEKSVPASMKKVELNLKNVAKKCQVLVL 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGENI FEV+E +NS VWRA F+++ +I A L PN +
Sbjct: 115 WLDCDREGENISFEVIEVCSE---VNSKMKVWRAHFNSLVPDEIIKAYNTLTAPNRHMSE 171
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+VD RQE+DLR G AFTR+QT + K L+ ++SYG CQ PTLGF V+R+ +I+ F
Sbjct: 172 AVDVRQEIDLRTGAAFTRFQTTLLKNKSKALEGKVLSYGACQFPTLGFVVDRYYQIKAFT 231
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFK-AVEKEKHVTVVDVQSSTKSKT 291
E ++ ++ + N + W R +FD+ C++ ++ A+E T+ ++ +++
Sbjct: 232 KETFYKINCVVEKNSILTEFHWDRNRLFDRLICDLLYEDALEHINSATITEILEKSRTNF 291
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
KP L TV+L + S + + M IAE+LY G +SYPRTET +P + D ++
Sbjct: 292 KPLPLTTVDLQKACSKYFKISSNETMTIAEKLYNSGLISYPRTETNIFPSDMDHEKQIKM 351
Query: 352 QESSPDWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKLATRTQLDGDAWRLYDYIVRH 410
+ + + +V+E+L+ I PR GK HPPI PT+ A L ++YD+IVR+
Sbjct: 352 FQENRIYSSYVQELLNGKIKNPRNGKATDKSHPPIHPTRNANLNDLSEKERKIYDFIVRN 411
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLI 470
++ + D + V +E F + + + + ++ IP+F G+ +
Sbjct: 412 YLANMSDDARGFETKIGLQVGNESFHCNGLMITERNYLNIFPFRKWSDKEIPEFHEGEKV 471
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLV 530
+ ++ +T+PP LTE ELI LM+K+GIGTDA+I HI I +R YV V G +
Sbjct: 472 QLNCFEVSYGETSPPKPLTEPELIQLMDKNGIGTDATIAQHIQKIQEREYVIVKQG-SFI 530
Query: 531 PTSLGIVLVHGYQKIDRELVEPTMRS 556
PT+LG+ LV GY + E P +R+
Sbjct: 531 PTNLGLALVEGYDSMGFEFSRPQLRA 556
>gi|17555378|ref|NP_499558.1| Protein TOP-3 [Caenorhabditis elegans]
gi|6686028|sp|O61660.1|TOP3_CAEEL RecName: Full=DNA topoisomerase 3; AltName: Full=DNA topoisomerase
III
gi|3047013|gb|AAC13567.1| DNA topoisomerase III [Caenorhabditis elegans]
gi|14530655|emb|CAB60518.2| Protein TOP-3 [Caenorhabditis elegans]
Length = 759
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 196/524 (37%), Positives = 289/524 (55%), Gaps = 12/524 (2%)
Query: 44 LFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL-PAFLAN 102
LFG +TSV GH+M F +NW +ELF P + TP++KL L
Sbjct: 45 LFGQQTAISVTSVSGHMMNFQFHENMSNWQTASMVELFRAPV-RHVVTPEMKLIEQTLRE 103
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWN 162
+A+ + LV+W DCD+EGE I E+++ R + N ++RARFS IT I A N
Sbjct: 104 QAQRHDILVVWTDCDREGEAIGAEIVKVCR---DSNRRLDIFRARFSEITKAAITRAARN 160
Query: 163 LVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL-----DASLISYGPCQTPT 217
L++ + +VD R ELDLRIG AFTR QT + ++ DL + +ISYG CQ PT
Sbjct: 161 LIRLDEKTVAAVDCRSELDLRIGSAFTRLQTLHLRNRFRDLLGQNDTSQVISYGSCQFPT 220
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKH 277
LGF +R+ I F EP+W L + V W R +FD+ T ++ ++ K
Sbjct: 221 LGFVTDRYKMIENFVSEPFWKLIVEHTRESHKVEFLWDRNRLFDRDTVDILHDECKETKE 280
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V V KSK +PQAL+TVEL ++ S L M MQ+AE+LY++G++SYPRTET
Sbjct: 281 AHVEKVAKKPKSKWRPQALDTVELEKLGISKLRMSAKQTMQVAEKLYSKGFISYPRTETN 340
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQL 396
++P +L +++QQ S WGD EVL NG++ PR G+ + HPPI P K + QL
Sbjct: 341 KFPAGLNLTPLVQQQTQSNIWGDFANEVLQNGVN-PRNGRKSDEAHPPIHPLKFTEKHQL 399
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM 456
GD W++Y+ +VRHF+ + D + + +V E F + G+ V +
Sbjct: 400 QGDDWKVYELVVRHFLACVSQDAQGEETMVNLTVGTEKFHASGLRIRDMGYLKVYVYEKW 459
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
N +P + G+ +K+ + KT PD+LTE++LISLM+K+GIGTDA+ HI I
Sbjct: 460 GNRLLPTYTEGERFTDFELKIGDGKTQAPDFLTEADLISLMDKYGIGTDATHAEHIEKIK 519
Query: 517 QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRV 560
R Y+ V +L+P+ LG+ LV GY + + +P +R+ +
Sbjct: 520 TREYIGVRPDGKLIPSFLGLALVDGYDDMGFAMSKPDLRANLEI 563
>gi|353233151|emb|CCD80506.1| putative prokaryotic DNA topoisomerase [Schistosoma mansoni]
Length = 1058
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 196/524 (37%), Positives = 295/524 (56%), Gaps = 8/524 (1%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ L G V+ MTSV GH+ DF Y +W +P+ LF P K+ +
Sbjct: 62 IYEFPMNLNGQNVMMVMTSVSGHLTNYDFLPNYKSWHSCNPMVLFDAPIVKQVLKDYEPI 121
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L E + C+ L++W DCD+EGENI EV++ R I + RARFS IT +
Sbjct: 122 KQTLQREVRSCQKLIIWTDCDREGENIGVEVIDVCRE---IKPNIEILRARFSEITPAAV 178
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQT 215
A+ L P+ + +VD RQELDLRIG AFTR+QT + + L LISYG CQ
Sbjct: 179 HRAVDRLTIPDYNASTAVDVRQELDLRIGAAFTRFQTLRLRRVFPQALSDQLISYGSCQF 238
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKE 275
PTLGF VER ++ F EP+W + +T++ + W RG +FD+ C +++ + +
Sbjct: 239 PTLGFVVERFREVDQFVSEPFWRIVVTVSRDEKTTEFQWQRGRLFDQDCCRAYYEHLNQN 298
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
++ +V+V K+K +P AL+TVEL ++AS L MG +AMQ+AERLY +G++SYPRTE
Sbjct: 299 RYGQIVEVIKRPKTKWRPTALDTVELEKLASRKLQMGAKYAMQLAERLYNKGFISYPRTE 358
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRT 394
T +P + DL +++ Q + W D +L G P+ GK HPPI P K+
Sbjct: 359 TKIFPPDLDLKSLVHVQINDSRWSDFATRILERG-PNPKNGKSSDKAHPPIHPLKVG--D 415
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
L GD RLY+ + RHF+ L D + + + + E+F + +L + V +
Sbjct: 416 SLQGDEARLYELVTRHFLACLSTDAEGAETIVRLCIDGELFESKGLMILALNYLEVYIYD 475
Query: 455 AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINN 514
+ +P F+ G+ I +++++ +T PP LTE++LISLM++HGIGTDA+ HI
Sbjct: 476 RWAEKDMPVFQLGEWILPDNIQVLTGQTCPPPLLTEADLISLMDRHGIGTDATHAEHIET 535
Query: 515 ICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAY 558
I QR YV + + LVP LG+ LV GY + E+ +P +RS +
Sbjct: 536 IKQRLYVGLEQNKFLVPGQLGMGLVEGYDSMGFEMSKPNLRSEF 579
>gi|256052304|ref|XP_002569713.1| prokaryotic DNA topoisomerase [Schistosoma mansoni]
Length = 1165
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 196/524 (37%), Positives = 295/524 (56%), Gaps = 8/524 (1%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ L G V+ MTSV GH+ DF Y +W +P+ LF P K+ +
Sbjct: 62 IYEFPMNLNGQNVMMVMTSVSGHLTNYDFLPNYKSWHSCNPMVLFDAPIVKQVLKDYEPI 121
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L E + C+ L++W DCD+EGENI EV++ R I + RARFS IT +
Sbjct: 122 KQTLQREVRSCQKLIIWTDCDREGENIGVEVIDVCRE---IKPNIEILRARFSEITPAAV 178
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQT 215
A+ L P+ + +VD RQELDLRIG AFTR+QT + + L LISYG CQ
Sbjct: 179 HRAVDRLTIPDYNASTAVDVRQELDLRIGAAFTRFQTLRLRRVFPQALSDQLISYGSCQF 238
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKE 275
PTLGF VER ++ F EP+W + +T++ + W RG +FD+ C +++ + +
Sbjct: 239 PTLGFVVERFREVDQFVSEPFWRIVVTVSRDEKTTEFQWQRGRLFDQDCCRAYYEHLNQN 298
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
++ +V+V K+K +P AL+TVEL ++AS L MG +AMQ+AERLY +G++SYPRTE
Sbjct: 299 RYGQIVEVIKRPKTKWRPTALDTVELEKLASRKLQMGAKYAMQLAERLYNKGFISYPRTE 358
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRT 394
T +P + DL +++ Q + W D +L G P+ GK HPPI P K+
Sbjct: 359 TKIFPPDLDLKSLVHVQINDSRWSDFATRILERG-PNPKNGKSSDKAHPPIHPLKVG--D 415
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
L GD RLY+ + RHF+ L D + + + + E+F + +L + V +
Sbjct: 416 SLQGDEARLYELVTRHFLACLSTDAEGAETIVRLCIDGELFESKGLMILALNYLEVYIYD 475
Query: 455 AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINN 514
+ +P F+ G+ I +++++ +T PP LTE++LISLM++HGIGTDA+ HI
Sbjct: 476 RWAEKDMPVFQLGEWILPDNIQVLTGQTCPPPLLTEADLISLMDRHGIGTDATHAEHIET 535
Query: 515 ICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAY 558
I QR YV + + LVP LG+ LV GY + E+ +P +RS +
Sbjct: 536 IKQRLYVGLEQNKFLVPGQLGMGLVEGYDSMGFEMSKPNLRSEF 579
>gi|341880276|gb|EGT36211.1| CBN-TOP-3 protein [Caenorhabditis brenneri]
Length = 763
Score = 364 bits (935), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 198/524 (37%), Positives = 287/524 (54%), Gaps = 12/524 (2%)
Query: 44 LFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL-PAFLAN 102
LFG +TSV GH+M F NW ++LF P + TP++KL L
Sbjct: 45 LFGQPTAVSVTSVSGHLMNWQFHENMANWQTTSMVQLFDAPV-RHVVTPEMKLIEQTLRE 103
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWN 162
EA+ + LV+W DCD+EGE I E+++ R N ++RARFS IT I A N
Sbjct: 104 EARRHDVLVVWTDCDREGEAIGAEIVKVCRE---TNRQMDIYRARFSEITKVAITRAARN 160
Query: 163 LVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL-----DASLISYGPCQTPT 217
L++ + +VD R ELDLRIG AFTR QT + ++ DL ++ +ISYG CQ PT
Sbjct: 161 LIRLDEKIVAAVDCRSELDLRIGSAFTRLQTLHLRNRFRDLLGQNENSKVISYGSCQFPT 220
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKH 277
LGF +R+ I F EP+W L + V W R +FD+ T V + + K
Sbjct: 221 LGFVTDRYKMIENFISEPFWKLVVEHTRETHKVEFLWDRVRLFDRDTVEVLHEDCNEAKE 280
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V V KSK +PQAL+TVEL ++ S L M MQ+AE+LY++GY+SYPRTET
Sbjct: 281 AVVEKVTKKPKSKWRPQALDTVELEKLGISKLRMSAKQTMQVAEKLYSKGYISYPRTETN 340
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQL 396
++P DL +++QQ +S WGD EVL NGI+ PR G+ + HPPI P RTQL
Sbjct: 341 KFPAGLDLRPLVQQQTNSGIWGDFANEVLQNGIN-PRNGRKSDEAHPPIHPLSFVDRTQL 399
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM 456
GD W++Y+ +VRHF+ + D + + + E F + G+ V +
Sbjct: 400 QGDDWKVYELVVRHFLACVSQDAQGEETMVNLRIGGEKFHSSGLRIRDMGYLKVYIYERW 459
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
N +P + G+ ++++ + KT PP+ LTE++LI+LM+K GIGTDA+ HI I
Sbjct: 460 GNRLLPTYVEGERFSDYNLRIGDGKTQPPELLTEADLIALMDKFGIGTDATHAEHIEKIK 519
Query: 517 QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRV 560
R Y+ V +L+P+ LG+ LV GY + + +P +R+ +
Sbjct: 520 TREYIGVKPDGKLIPSFLGLALVDGYDDMGFAMSKPDLRANLEI 563
>gi|91089373|ref|XP_973578.1| PREDICTED: similar to topoisomerase (DNA) III alpha [Tribolium
castaneum]
gi|270012533|gb|EFA08981.1| hypothetical protein TcasGA2_TC006688 [Tribolium castaneum]
Length = 951
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 199/529 (37%), Positives = 289/529 (54%), Gaps = 15/529 (2%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ + G MTSV GH++ +F + NW +P+ LF P K K+
Sbjct: 37 IYEFDATVMGQQAHMIMTSVSGHLLNYEFGPSFRNWKSCNPVALFDAPVVKMCPEDYQKI 96
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L E + C+ L++W DCD+EGENI FE+++ ++ ++RA+FS IT I
Sbjct: 97 KRTLEREIRSCQGLIIWTDCDREGENIGFEIIKVCS---DVKPNLRIYRAKFSEITAASI 153
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYGP 212
A+ L +PN + +VD RQELDLR G AFTR QT + F K D LISYG
Sbjct: 154 FRALNTLGQPNKNVSDAVDVRQELDLRTGAAFTRLQTLRLQRVFPQKLAD---RLISYGS 210
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAV 272
CQ PTLGF VER+ I+ F PEP+W + + +N + TW R +FDK+ C
Sbjct: 211 CQFPTLGFVVERYQAIQDFIPEPFWKIKMNHTVNDITTEFTWKRDRLFDKNACEAILDIC 270
Query: 273 EKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYP 332
++ + TV V+ KSK +P L+TVE+ + S L + M+IAE+LYTQG +SYP
Sbjct: 271 KESPNATVEKVEGKPKSKWRPLPLDTVEMEKTVSRKLKITAKDTMKIAEKLYTQGLISYP 330
Query: 333 RTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLA 391
RTET +P+ +L ++ Q++ WG +++ G PR+GK HPPI PTK A
Sbjct: 331 RTETNIFPKELNLANLVTLQQNDQRWGAFAHRIMNEGGPAPRQGKKSDQAHPPIHPTKHA 390
Query: 392 TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
L G+ R+Y+YIVRHF+ + D + V +A E FT + +L + V
Sbjct: 391 --DNLTGNEQRVYEYIVRHFLACVHKDAQGFETVVTADIAGEKFTAKGLIILEKNYLEVY 448
Query: 452 TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
T+ + I ++ GD +++ E T PP LTE++LI+LMEKHGIGTDA+ H
Sbjct: 449 TYEKWNAKEIHSYQQGDTFIPSVLELYEGATAPPKLLTEADLIALMEKHGIGTDATHAEH 508
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRE--LVEPTMRSAY 558
I+ I R YV + VP +LG+ LV GY I E L +P +R+ +
Sbjct: 509 IDTIKTREYVGLHENIYFVPGTLGMGLVEGYNNIGLEVSLAKPILRADF 557
>gi|320166036|gb|EFW42935.1| topoisomerase III [Capsaspora owczarzaki ATCC 30864]
Length = 874
Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 206/529 (38%), Positives = 292/529 (55%), Gaps = 29/529 (5%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
TSV GH++ DFT+ Y+ W+ P LF P E+ + L EA+ ++LVL
Sbjct: 3 FTSVVGHLLASDFTADYSKWNTCAPEALFEAPIERFIPEKLRDIEKMLQREAQRAQWLVL 62
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGENI EV+ AV ++N N V RARFSA+T +DI A NL + + +
Sbjct: 63 WTDCDREGENIASEVV-AVCKKVNRN--LVVLRARFSAVTPRDITHACNNLTQVDGRQVD 119
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLD--ASLISYGPCQTPTLGFCVERHDKIRT 230
+VDAR ELDLRIG AFTR QT+ Q +L+ S+ISYGPCQ PTLGF V+R+ +++
Sbjct: 120 AVDARIELDLRIGSAFTRMQTQLLQPAIPELNELKSVISYGPCQFPTLGFIVDRYRRVKA 179
Query: 231 FKPEPYWLLDLTLNL------------------NGVAVS----VTWSRGHIFDKSTCNVF 268
F PE +W + + G A S TW RG +FD C V
Sbjct: 180 FVPEEFWTIVVACPSPSSESSAAAVAVPQKPGKKGKAASDTVPFTWVRGQLFDHPACLVL 239
Query: 269 FKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGY 328
++ + + TVV V+S SK +P L+TVEL ++AS L H ++ AE LYTQG+
Sbjct: 240 YEMILERPEATVVSVESRPTSKWRPLPLSTVELQKLASVQLRFTSDHTLKTAESLYTQGF 299
Query: 329 VSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITP 387
+SYPRT+T +PE DL A+ Q + P+WG V + + PRKGK+ + HPPI P
Sbjct: 300 LSYPRTDTDVFPETMDLTALANMQANHPEWGSFVHQYILARGPNPRKGKNNDEAHPPIHP 359
Query: 388 TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
TK A + + D +LY+ + R F+ TL D + VA E F +L +
Sbjct: 360 TKPAPASFQNADEKKLYELVTRSFLATLSSDAQGHLTNVEIDVAGERFRANGLAILERNY 419
Query: 448 TGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDAS 507
V + N ++P F+ GD V+M TTPP LTES L++LM +HGIGTDA+
Sbjct: 420 LLVYPYDVWSNHTLPPFREGDRFQPAEVRMDAGSTTPPPLLTESALLTLMHQHGIGTDAT 479
Query: 508 IPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
+ HI + +R Y + G+ +PT+LG+ L+ GY + E+ +P MR+
Sbjct: 480 MHEHIKKVLERKYAEM-RGQMFLPTNLGLGLIEGYDSMGLEMSKPHMRA 527
>gi|328710041|ref|XP_001950527.2| PREDICTED: DNA topoisomerase 3-alpha-like [Acyrthosiphon pisum]
Length = 915
Score = 361 bits (927), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 199/534 (37%), Positives = 294/534 (55%), Gaps = 11/534 (2%)
Query: 28 LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCP 84
LQR G ++E+ G MTSV GH++G +F Y +W PLELF P
Sbjct: 58 LQRREGFSKFNKIYEFNHTFQGSPSTMIMTSVSGHLLGYEFQGSYRSWTSCSPLELFHIP 117
Query: 85 TEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVW 144
K + + L E + C LV+W D D+EGENI FE+++ R +N V+
Sbjct: 118 VVKECPNDFINIKKTLVREIRSCNTLVIWTDADREGENIGFEIIDVCRE---VNPRIQVY 174
Query: 145 RARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD-L 203
RA S IT ++ A+ +L PN + +VD R ELDLRIG AFTRYQT Q + + L
Sbjct: 175 RAILSEITRPSVQRAISSLGPPNKNISDAVDVRSELDLRIGAAFTRYQTMRLQKVFPEVL 234
Query: 204 DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKS 263
SLISYG CQ PTLGF VER+ I+ F PE +W + + + + V +W R +FD+
Sbjct: 235 AKSLISYGSCQFPTLGFVVERYKDIQNFIPENFWKIKVHHKIENLDVEFSWQRVRLFDEV 294
Query: 264 TCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERL 323
CN+ ++ ++ V+ V KSK +P L+T+EL + AS LG+ M+IAE+L
Sbjct: 295 LCNILYERCQENPTALVLKVTKKPKSKWRPVPLDTIELEKAASRKLGINAKETMKIAEKL 354
Query: 324 YTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-H 382
Y+QG++SYPRTET +P+ +L +++ +WGD + VL NG + PR+GK H
Sbjct: 355 YSQGFISYPRTETNIFPKELNLSNLVQLHVQDNNWGDFAQSVLINGPT-PRQGKKSDQAH 413
Query: 383 PPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYL 442
PPI PTK L ++Y+Y+VRHF+ L D + + + E F +
Sbjct: 414 PPIHPTKYT--NGLQDRERKVYEYVVRHFLACLSKDAEGEETIVNIEINGEKFLANGLRI 471
Query: 443 LHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGI 502
+ + V + N+ I ++ G +++V+ +T+PP+ LTE++LISLM+KHGI
Sbjct: 472 IALNYLEVYPYDKWSNKQIHNYDQGQSFMPTGLEIVDGQTSPPNLLTEADLISLMDKHGI 531
Query: 503 GTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
GTDA+ HI I R YV + + + VP LGI LV GY + E+ +P +R+
Sbjct: 532 GTDATHAEHIETIKSRLYVGLENNKYFVPGELGIGLVEGYDNMGFEMSKPHLRA 585
>gi|67483198|ref|XP_656880.1| DNA topoisomerase III [Entamoeba histolytica HM-1:IMSS]
gi|56474106|gb|EAL51494.1| DNA topoisomerase III, putative [Entamoeba histolytica HM-1:IMSS]
gi|449704214|gb|EMD44500.1| DNA topoisomerase alpha, putative [Entamoeba histolytica KU27]
Length = 607
Score = 361 bits (927), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 182/506 (35%), Positives = 282/506 (55%), Gaps = 6/506 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+ G+DFT+ Y +W DP ELF+ P EK + K+ L + AK C+ LVL
Sbjct: 55 VTSVAGHLKGIDFTTAYRSWGSCDPEELFTAPIEKSVPSNMKKVELNLKSLAKKCQVLVL 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGENI FEV+E +NS VWRA F+++ +I A L PN +
Sbjct: 115 WLDCDREGENISFEVIEVCSE---VNSKMKVWRAHFNSLVPNEIIKAYNTLTAPNKHMSE 171
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+VD RQE+DLR G AFTR+QT + K L+ ++SYG CQ PTLGF V+R+ +I+ F
Sbjct: 172 AVDVRQEIDLRTGAAFTRFQTTLLKNKSKALEGKVLSYGACQFPTLGFVVDRYYQIKAFT 231
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFK-AVEKEKHVTVVDVQSSTKSKT 291
E ++ ++ + N + W R +FD+ C++ ++ A+E T+ ++ +++
Sbjct: 232 KETFYKINCVVEKNSILTEFHWDRNRLFDRLICDLLYEDALEYINSATITEILEKSRTNF 291
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
KP L TV+L + S + + M IAE+LY G +SYPRTET +P + + +
Sbjct: 292 KPLPLTTVDLQKACSKYFKISSNETMNIAEKLYNSGLISYPRTETNIFPSDMNHRKQIEM 351
Query: 352 QESSPDWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKLATRTQLDGDAWRLYDYIVRH 410
+ + + +V+E+L+ + PR GK HPPI PT+ A L ++YD+IVR+
Sbjct: 352 FQENRIYSSYVQELLNGKMKNPRNGKATDKSHPPIHPTRNANLNDLSEKERKIYDFIVRN 411
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLI 470
++ + D + V +E F + + + + ++ IP+F G+ +
Sbjct: 412 YLANMSDDARGFETKIGLQVGNESFHCNGLMITERNYLNIFPFRKWSDKEIPEFHEGEKV 471
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLV 530
+ ++ +T+PP LTE ELI LM+K+GIGTDA+I HI I +R YV V G +
Sbjct: 472 QLNCFEVSYGETSPPKPLTEPELIQLMDKNGIGTDATIAQHIQKIQEREYVIVKQG-SFI 530
Query: 531 PTSLGIVLVHGYQKIDRELVEPTMRS 556
PT+LG+ LV GY + E P +R+
Sbjct: 531 PTNLGLALVEGYDSMGFEFSRPQLRA 556
>gi|358255314|dbj|GAA57027.1| DNA topoisomerase III, partial [Clonorchis sinensis]
Length = 1106
Score = 361 bits (926), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 206/541 (38%), Positives = 295/541 (54%), Gaps = 28/541 (5%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ G MTSV GH++ +F+ + +W DPL LF P K +
Sbjct: 10 IYEFTYNFGGAHATMVMTSVSGHLLNYEFSPAFKSWHASDPLVLFDAPVSKGVIKDGEPI 69
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRH-QININSPKTVWRARFSAITDKD 155
L E C L++W DCD+EGENI E++ R + NI V+RA+FS IT
Sbjct: 70 KETLQREVGRCNRLIIWTDCDREGENIGVEIVNVCREVKPNIE----VFRAKFSEITPVA 125
Query: 156 IKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQ 214
I A+ L P+ + +VD RQELDLRIG AFTR+QT + + L LISYG CQ
Sbjct: 126 ITRAVNELSVPDYRVSAAVDGRQELDLRIGAAFTRFQTLRLRRVFPRALSNQLISYGSCQ 185
Query: 215 TPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEK 274
PTLGF VER ++ F PEP+W + +T NG AV W RG +FD C +++ + +
Sbjct: 186 FPTLGFVVERFREVDRFIPEPFWRIVVTAEYNGKAVDFQWKRGRLFDHDACKAYYEHLLE 245
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRT 334
++ VV+V KSK +P AL+TVEL ++A+ L +G MQ+AERLYT+G++SYPRT
Sbjct: 246 NRYGQVVEVVKRPKSKLRPVALDTVELEKLATRKLRIGAKAVMQLAERLYTRGFISYPRT 305
Query: 335 ETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATR 393
ET +P N DL ++R Q W D +L G++ PR GK HPPI P K
Sbjct: 306 ETNIFPPNLDLAELVRVQTHDNRWSDFASRILRTGVN-PRNGKSTDKAHPPIHPLKAG-- 362
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQK-----VAKFSVAD-------------EMF 435
L GD RL++ I RHF+ + D + V K SV D E+F
Sbjct: 363 AGLQGDEARLFELITRHFLACISADAQGAETLVRLCVGKPSVPDASSRSTLLSSEDGEIF 422
Query: 436 TMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELIS 495
+ +L + V + +PDF+ G + +++++ +T+PP LTE++LI+
Sbjct: 423 DAKGLVILQSNYLEVYIYDRWVERDMPDFQLGAWLLPTNIEILSGQTSPPPLLTEADLIA 482
Query: 496 LMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMR 555
LM++HGIGTDA+ HI I QR YV + G+ LVP LG+ LV GY + E+ +P +R
Sbjct: 483 LMDRHGIGTDATHAEHIETIKQRLYVGLEQGKFLVPGQLGMGLVEGYDSMGFEMSKPHLR 542
Query: 556 S 556
+
Sbjct: 543 A 543
>gi|390341006|ref|XP_782119.2| PREDICTED: DNA topoisomerase 3-alpha [Strongylocentrotus
purpuratus]
Length = 1058
Score = 361 bits (926), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 198/522 (37%), Positives = 290/522 (55%), Gaps = 8/522 (1%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ + MTSV GH++ +F Y W +P+ LF P +K +
Sbjct: 60 IYEFDYSMLNQQCDMTMTSVSGHLLNYEFALAYQKWHSCNPVALFDAPVQKGCPENYKDI 119
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L EA+ + LV+W DCD+EGENI +EV++ + + V+RARFS IT + I
Sbjct: 120 KRTLEREARAADVLVIWTDCDREGENIGYEVIDVCKA---VKPRLDVYRARFSEITPQSI 176
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL-DASLISYGPCQT 215
A NLV+P+ +++VD RQ+LDLRIG AFTR+QT Q + DL LIS+G CQ
Sbjct: 177 TRACANLVRPDQRVSQAVDVRQQLDLRIGAAFTRFQTLRLQRVFPDLLQNQLISFGSCQF 236
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKE 275
PTLGF VER+ ++ F PE ++ + +T V W R +FD+ C VF++ +
Sbjct: 237 PTLGFVVERYKQVEAFIPETFYKIKVTHKTEDGLVEFHWKRHRLFDQLACQVFYEICTEN 296
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
TVVD +S KSK +P L+TVEL ++A+ L + AM+IAE+LYTQG++SYPRTE
Sbjct: 297 PLATVVDERSKPKSKWRPLPLDTVELEKLAARKLKISAQQAMKIAEKLYTQGFISYPRTE 356
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRT 394
T +P+ +LV ++ +Q WG +L G PR+GK HPPI PTK
Sbjct: 357 TNIFPKELNLVPLIEKQTQDAQWGAFAGNLLQQG-PHPRQGKKTDHAHPPIHPTKY--NG 413
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
L G+ ++Y+ IVRHF+ D + + ++A+E FT ++ + V +
Sbjct: 414 NLQGNEQKVYELIVRHFLACCSQDAQGKETIVNITIAEEEFTATGLMIIARNYLDVYPYE 473
Query: 455 AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINN 514
+ IP + G S++MV+ +T P LTE++LI+LM+KHGIGTDA+ HI
Sbjct: 474 KWNAKIIPVYDRGQTFEPTSLEMVDGQTQAPPLLTEADLITLMDKHGIGTDATHAEHIET 533
Query: 515 ICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
I R YV V R VP LG+ L GY + EL +P +R+
Sbjct: 534 IKSRLYVGVRPDGRFVPGELGMGLCEGYDNMGYELSKPNLRA 575
>gi|198413663|ref|XP_002126376.1| PREDICTED: similar to topoisomerase (DNA) III alpha, partial [Ciona
intestinalis]
Length = 571
Score = 361 bits (926), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 205/530 (38%), Positives = 296/530 (55%), Gaps = 15/530 (2%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ + G +TS+ GH++ +F Y W PL LF EK + +
Sbjct: 44 IYEFSYHMLGQNCAMSVTSLSGHLLNYNFAGIYKKWHSCHPLSLFDVEVEKIVTENMVDI 103
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L E ++ + LV+W DCD+EGENI FE++ R NI V+RARFS ITD+ I
Sbjct: 104 KRTLEREVRNSQALVIWTDCDREGENIGFEIINICR---NIKPNIPVYRARFSEITDRSI 160
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQT 215
K+A NL +P+ + +VD RQELDLRIG AFTR+QT Q + L LISYG CQ
Sbjct: 161 KSACRNLQQPDQNTSDAVDVRQELDLRIGAAFTRFQTLRLQKVFPHVLSDKLISYGSCQF 220
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTL-----NLNG-VAVSVTWSRGHIFDKSTCNVFF 269
PTLGF VER+ F+PE +W +++T N +G V + +W R +F++ C V +
Sbjct: 221 PTLGFVVERYKAREQFQPEDFWKIEVTHTTTQHNDDGPVTSTFSWKRNRLFNELACRVLY 280
Query: 270 -KAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGY 328
+E TV +V S +SK +P A+ TVEL ++AS L + M+IAE LYTQGY
Sbjct: 281 ANCMEPPVVATVTNVSSRPRSKWRPVAMETVELEKLASRKLRINAKETMKIAETLYTQGY 340
Query: 329 VSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLS-NGISKPRKG-KDVGDHPPIT 386
+SYPRTET +P++FDL ++ +Q + P WG+ R++L+ G +PR G K HPPI
Sbjct: 341 ISYPRTETNIFPKDFDLERLVGEQTNHPAWGNFARDLLALEGGPQPRNGHKSDQAHPPIH 400
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
PTK A+ L G+ R+Y+ I RHF+ D + + E F + ++
Sbjct: 401 PTKAAS--NLSGNNARIYELIARHFLACCHRDAKGHETTVDIILGGEEFNAQGLMIIERN 458
Query: 447 FTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDA 506
+ V + + I + GD + M +TT P LTE++LI+LM+KHGIGTDA
Sbjct: 459 YLEVYPYDRWNGKIIAVYNIGDEFEPTGLNMPGGRTTAPPLLTEADLIALMDKHGIGTDA 518
Query: 507 SIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
+ HI I QR YV +TS +R +P LG+ LV GY + E+ P +R+
Sbjct: 519 THAEHIETIKQRMYVGLTSDQRFLPGELGMGLVEGYNLMGYEMSRPELRA 568
>gi|357113918|ref|XP_003558748.1| PREDICTED: DNA topoisomerase 3-alpha [Brachypodium distachyon]
Length = 924
Score = 361 bits (926), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 201/539 (37%), Positives = 293/539 (54%), Gaps = 31/539 (5%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
+ E+ + G +TSV GH+M LDF +Y W DP+ELF P K KL +
Sbjct: 47 IFEFNYAIGGQACHMLVTSVTGHLMELDFDDRYRRWYSCDPVELFHAPVRKAVPQDKLDI 106
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVME---AVRHQININSPKTVWRARFSAITD 153
L EA+ C++LVLWLDCD+EGENI +EV+E V H +NI WRARFSA+ D
Sbjct: 107 KRTLEEEARTCQWLVLWLDCDREGENIAYEVVEICAGVNHCLNI------WRARFSALID 160
Query: 154 KDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKY-----GDLDASLI 208
++I A+ +L +PN A +VDARQE+DLRIG +FTR+QT + + G+ ++
Sbjct: 161 REIHEAVQHLGRPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAFVLDVSGEERNMVL 220
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVF 268
SYGPCQ PTLGF VER +I+ +PE +W ++ + + S W RGH+FD S+ V
Sbjct: 221 SYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGTASFGWIRGHLFDYSSAIVI 280
Query: 269 FKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGY 328
++ +E TV +V++ K K P L+T+EL + AS M H M++AE LY G+
Sbjct: 281 YEMCVQEPMATVQNVRNQEKLKYPPYPLSTLELQKRASRCCRMSSEHTMKVAEELYQAGF 340
Query: 329 VSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVL----------SNGISKPRKGKD 378
+SYPRTET + N DL A+ +Q P WG + + +L SNG G D
Sbjct: 341 ISYPRTETDNFSPNTDLHAIAHEQVPHPVWGSYAQRLLNPEERLWRNPSNG------GHD 394
Query: 379 VGDHPPITPTKL-ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTM 437
HPPI PTK A + D ++Y+ +VRHF+ V + + +A E F
Sbjct: 395 DKAHPPIHPTKFTAGESNWSQDHHKVYELVVRHFLACCSQPAVGAETTVEIDIAGEQFNA 454
Query: 438 EAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLM 497
+ +L + V + + +P + G ++ + T PP L E++L+S M
Sbjct: 455 SGRVVLAKNYLDVYRYDSWGGSLLPTYTIGQQFVPTTLTLDSGVTRPPPLLAEADLLSCM 514
Query: 498 EKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
+K GIGTDA++ HI + R Y T + R PT+LG LV GY ++ EL +P +R+
Sbjct: 515 DKAGIGTDATMHEHIKKLLDRCYATKDANSRFSPTNLGEALVMGYDEMGYELWKPYLRA 573
>gi|225431699|ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis vinifera]
Length = 914
Score = 360 bits (925), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 192/514 (37%), Positives = 284/514 (55%), Gaps = 13/514 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+M L+F ++ W DP L+ P K KL + L EA+ C++LVL
Sbjct: 54 VTSVIGHLMELEFEDRFRKWHSCDPAHLYHAPVRKFVPEDKLDIKRTLEEEARKCQWLVL 113
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGENI FEV+E +N VWRARFSA+ D++I ++ NLV+PN A
Sbjct: 114 WLDCDREGENIAFEVLEVC---AQVNRHIDVWRARFSALIDREIHESVQNLVRPNQLFAD 170
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKY-----GDLDASLISYGPCQTPTLGFCVERHDK 227
+VD RQE+DLRIG +FTR+QT + + D ++SYGPCQ PTLGF VER+ +
Sbjct: 171 AVDVRQEIDLRIGASFTRFQTMLLRDAFVLDFAADDRNLVLSYGPCQFPTLGFVVERYWE 230
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
I++ +PE +W ++ + + + W R H+FD + + ++ +E TV V+
Sbjct: 231 IQSHEPEEFWTINCSHKSDEGTSTFNWMRAHLFDYTCAVIIYEMCIQEPTATVTKVRQQE 290
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
K K P LNT+EL + AS M H M++AE LY G++SYPRTET + E DL
Sbjct: 291 KLKYPPHPLNTIELEKRASRYFHMSSEHTMKVAEDLYQTGFISYPRTETDYFSERTDLHG 350
Query: 348 VLRQQESSPDWGDHVREVLSNGISKPRK----GKDVGDHPPITPTKL-ATRTQLDGDAWR 402
++++Q P WG + + +L G R G D HPPI PTK A + D R
Sbjct: 351 IVQEQLGHPIWGSYAQRLLDPGAGLWRNPSNGGHDDKAHPPIHPTKFSAGESGWSQDHQR 410
Query: 403 LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP 462
LY+ +VRHF+ + V + + + +A E F+ + ++ + V + + IP
Sbjct: 411 LYELVVRHFLACVSQPAVGAETIVEIDIAGESFSSSGRVIIAKNYLDVYRFESWGGSMIP 470
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT 522
+ G ++ + T PP L+E++L++ M+K GIGTDA++ HI + R Y T
Sbjct: 471 TYVFGQQFIPTTLTLDSGVTRPPPLLSEADLLNCMDKAGIGTDATMHDHIKKLLDRFYAT 530
Query: 523 VTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
S R PT+LG LV GY + EL +P +RS
Sbjct: 531 KDSNTRFSPTNLGEALVMGYDDMGYELWKPYLRS 564
>gi|414864981|tpg|DAA43538.1| TPA: hypothetical protein ZEAMMB73_751776 [Zea mays]
Length = 915
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 197/520 (37%), Positives = 284/520 (54%), Gaps = 25/520 (4%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+M L+F ++ W DP ELF P K K + L EA+ C++LVL
Sbjct: 61 VTSVTGHLMELEFDDRFRRWHSCDPAELFHAPVRKSVPQDKQAIKQTLEEEARRCQWLVL 120
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGENI +EV++ NS +WRARFSA+ D++I ++ +L +PN A
Sbjct: 121 WLDCDREGENIAYEVIDVC---TRANSHLNIWRARFSALIDREIHESVQHLGRPNKLFAD 177
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKY-----GDLDASLISYGPCQTPTLGFCVERHDK 227
+VDARQE+DLRIG +FTR+QT + + GD + ++SYGPCQ PTLGF VER +
Sbjct: 178 AVDARQEIDLRIGASFTRFQTMLLKDAFVIDVTGDERSLVLSYGPCQFPTLGFIVERFWE 237
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
I+ +PE +W ++ T + S W RGH+FD S ++ E TV +V++
Sbjct: 238 IQAHEPEEFWTINCTHTSDEGTASFGWIRGHLFDYSCAISIYEMCVSEPMATVQNVRNQE 297
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
K K P L+TVEL + AS M H M++AE LY G++SYPRTET + N DL A
Sbjct: 298 KLKYPPYPLSTVELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSPNTDLHA 357
Query: 348 VLRQQESSPDWGDHVREVL----------SNGISKPRKGKDVGDHPPITPTKLAT-RTQL 396
++R+Q + P WG + + +L SNG G D HPPI PTK +
Sbjct: 358 IVREQVNHPVWGAYAQRLLNPEARLWRNPSNG------GHDDKAHPPIHPTKFSEGERNW 411
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM 456
D RLY+++VRHF+ V + + +A E F + +L + V + +
Sbjct: 412 SPDHTRLYEFVVRHFLACCSQPAVGAETTVEIDIAGEQFNASGRVILAKNYLDVYRFDSW 471
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
+P + G ++ + T PP L E++L+S M+K GIGTDA++ HI +
Sbjct: 472 GGTLLPTYNIGQQFVPTTLTLDSGVTRPPPLLAEADLLSCMDKAGIGTDATMHDHIKKLL 531
Query: 517 QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
R Y T R PT+LG LV GY ++ EL +P +RS
Sbjct: 532 DRCYATKDENTRFSPTNLGEALVMGYDEMGYELWKPYLRS 571
>gi|407035752|gb|EKE37830.1| DNA topoisomerase domain containing protein [Entamoeba nuttalli
P19]
Length = 607
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 182/506 (35%), Positives = 281/506 (55%), Gaps = 6/506 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+ G+DFT+ Y +W DP ELF+ P EK + K+ L + AK C+ LVL
Sbjct: 55 VTSVAGHLKGIDFTTAYRSWGSCDPEELFTAPIEKSVPSNMKKVELNLKSLAKKCQVLVL 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGENI FEV+E +NS VWRA F+++ +I A L PN +
Sbjct: 115 WLDCDREGENISFEVIEVCSE---VNSKMKVWRAHFNSLVPNEIIKAYNTLTAPNKHMSE 171
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+VD RQE+DLR G AFTR+QT + K L+ ++SYG CQ PTLGF V+R+ +I+ F
Sbjct: 172 AVDVRQEIDLRTGAAFTRFQTTLLKNKSKALEGKVLSYGACQFPTLGFVVDRYYQIKAFT 231
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFK-AVEKEKHVTVVDVQSSTKSKT 291
E ++ ++ + N + W R +FD+ C++ ++ A+E T+ ++ ++
Sbjct: 232 KETFYKINCVVEKNSILTEFHWDRNRLFDRLICDLLYEDALEYINSATITEILEKGRTNF 291
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
KP L TV+L + S + + M IAE+LY G +SYPRTET +P + + +
Sbjct: 292 KPLPLTTVDLQKACSKYFKISSNETMNIAEKLYNSGLISYPRTETNIFPSDMNHRKQIEM 351
Query: 352 QESSPDWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKLATRTQLDGDAWRLYDYIVRH 410
+ + + +V+E+L+ + PR GK HPPI PT+ A L ++YD+IVR+
Sbjct: 352 FQENRIYSSYVQELLNGKMKNPRNGKATDKSHPPIHPTRNANLNDLSEKERKIYDFIVRN 411
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLI 470
++ + D + V +E F + + + + ++ IP+F G+ +
Sbjct: 412 YLANMSDDARGFETKIGLQVGNESFHCNGLMITERNYLNIFPFRKWSDKEIPEFHEGEKV 471
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLV 530
+ ++ +T+PP LTE ELI LM+K+GIGTDA+I HI I +R YV V G +
Sbjct: 472 QLNCFEVSYGETSPPKPLTEPELIQLMDKNGIGTDATIAQHIQKIQEREYVIVKQG-SFI 530
Query: 531 PTSLGIVLVHGYQKIDRELVEPTMRS 556
PT+LG+ LV GY + E P +R+
Sbjct: 531 PTNLGLALVEGYDSMGFEFSRPQLRA 556
>gi|449521062|ref|XP_004167550.1| PREDICTED: DNA topoisomerase 3-like, partial [Cucumis sativus]
Length = 607
Score = 360 bits (923), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 195/517 (37%), Positives = 290/517 (56%), Gaps = 19/517 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+M L F +Y W DP++LF P K KL + L E++ ++LVL
Sbjct: 60 VTSVTGHLMELAFEERYRKWHSCDPVQLFHAPVHKFVPEDKLDIKRTLEQESRRAQWLVL 119
Query: 113 WLDCDKEGENICFEVME---AVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
WLDCD+EGENI FEV+E AV H +NI RA FSA+ ++DI A+ NLV+PN +
Sbjct: 120 WLDCDREGENIAFEVVEVCTAVNHHLNIK------RAHFSALIERDIHDAVQNLVQPNKW 173
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYG-----DLDASLISYGPCQTPTLGFCVER 224
A +VDARQE+DLRIG +FTR+QT + + D ++SYGPCQ PTLGF VER
Sbjct: 174 FADAVDARQEIDLRIGASFTRFQTLLLKDAFNIDSVTDDRNIVLSYGPCQFPTLGFVVER 233
Query: 225 HDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQ 284
+ +I++ +PE +W ++ + N + + +W+RG++FD + VF++ +E TVV+V+
Sbjct: 234 YWEIQSHEPEEFWTINCSHNSDDGISTFSWTRGNLFDYTCAVVFYEMCVQESTATVVNVR 293
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD 344
K P LNT+EL + AS M H M++AE LY G++SYPRTET + + D
Sbjct: 294 RQETLKYPPHPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDCFSQRTD 353
Query: 345 LVAVLRQQESSPDWGDHVREVLSNGISKPRK----GKDVGDHPPITPTKL-ATRTQLDGD 399
L ++R+Q+ WG + + +L R G D HPPI PTK A D
Sbjct: 354 LHGIVREQQEHQIWGAYAQRLLDPESRLWRNPSGGGHDDKAHPPIHPTKFSAGERGWSQD 413
Query: 400 AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
RLY+ +VRHF+ + V + +A E+F+ + +L + V + +
Sbjct: 414 HHRLYELVVRHFLACVSQPAVGAVTTVEIDIAGELFSTSGRMILARNYLDVYRFESWGGS 473
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
+IP + G ++ + T PP L+E++L+S M+K GIGTDA++ HI + R
Sbjct: 474 TIPTYVSGQQFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRF 533
Query: 520 YVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
Y T + R PT+LG LV GY + L +P +R+
Sbjct: 534 YATKDANTRFTPTNLGKALVMGYDDMGYNLWKPNLRA 570
>gi|196002305|ref|XP_002111020.1| hypothetical protein TRIADDRAFT_22834 [Trichoplax adhaerens]
gi|190586971|gb|EDV27024.1| hypothetical protein TRIADDRAFT_22834 [Trichoplax adhaerens]
Length = 625
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 202/563 (35%), Positives = 308/563 (54%), Gaps = 17/563 (3%)
Query: 1 MHLRVKKLVPASEIKLARPSLISL--LTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCG 58
MH R+ + ++ + ++S LT + ++ + E+ + MTSV G
Sbjct: 1 MHRRILNVAEKNDAAKSLSRIMSRGNLTKKEGLSKYNKIFEFDFNILNSSCRMVMTSVSG 60
Query: 59 HIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDK 118
H++ +DF S + W+ P+ELF +K + + L E ++C L++W D D+
Sbjct: 61 HLLSMDFLSNFQKWNSCLPVELFEAQVQKFCTGTNIPIKKTLEREIRNCNTLIIWTDGDR 120
Query: 119 EGENICFEVM---EAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVD 175
EGENI E++ +AV+ +I I+ RARFS IT + I A NL +P+ ++ +VD
Sbjct: 121 EGENIGHEIISVCKAVKPRIEIH------RARFSEITYRSIMRACENLTRPDNLQSDAVD 174
Query: 176 ARQELDLRIGCAFTRYQTKFFQGKYG-DLDASLISYGPCQTPTLGFCVERHDKIRTFKPE 234
RQELDLRIG AFTR+QT Q + L LISYG CQ PTLGF V R +I F E
Sbjct: 175 VRQELDLRIGAAFTRFQTLRLQRIFAAHLKDQLISYGSCQFPTLGFVVSRFKEIDAFISE 234
Query: 235 PYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQ 294
++ + +TL+ + W R +F + C V + + TV V S KSK +P
Sbjct: 235 DFYKIKVTLDTEDGVIDFNWKRVRLFYRHACEVIHQICLENPLATVTSVVSKPKSKWRPL 294
Query: 295 ALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQES 354
L+TVE ++ S L +G AM+IAE+LY +G++SYPRTET Q+P + +L ++ Q
Sbjct: 295 PLDTVEFEKLVSRKLKIGAKEAMKIAEKLYNRGFISYPRTETNQFPSSMNLRQLIEYQTE 354
Query: 355 SPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVRHFIG 413
S +WGD + ++ G + PR GK + HPPI PTK L G+ R+Y+ +VRHF+
Sbjct: 355 SSEWGDFAKSLVERGPT-PRWGKKTDNAHPPIHPTKFT--NTLQGNEKRIYELVVRHFLA 411
Query: 414 TLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQ 473
D ++ + + ++A E+F ++ ++ + V + ++ +P F G
Sbjct: 412 CCSQDAEGSETIVEITIARELFAVQGLIIIAKNYLEVYPYDRWSDKPLPAFVEGQQFQPT 471
Query: 474 SVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTS 533
++ MVE +T PP LTES LI LM+K+GIGTDA+ HI I R YV V +G R VP
Sbjct: 472 NISMVEGRTEPPPLLTESNLIDLMDKNGIGTDATHAEHIETIKARKYVAVQNG-RFVPGE 530
Query: 534 LGIVLVHGYQKIDRELVEPTMRS 556
LGI LV GY + E+ +P +R+
Sbjct: 531 LGIGLVEGYDSMGFEMSKPKLRA 553
>gi|145535065|ref|XP_001453271.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124420982|emb|CAK85874.1| unnamed protein product [Paramecium tetraurelia]
Length = 895
Score = 358 bits (919), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 196/507 (38%), Positives = 287/507 (56%), Gaps = 14/507 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKREATPKLKLPAFLANEAKDCEFLV 111
MTSV GH+ L + +Y WDK DPL + E + K L L AK C L+
Sbjct: 64 MTSVTGHLKNLKYPKQYQKWDKWDPLIILKDAEIENVISYEKRFLEENLQRFAKQCSQLI 123
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
LWLDCD+EGENI FEV+E + N V RA FSA+T DIK A+ NL +P+ +
Sbjct: 124 LWLDCDREGENIAFEVLEVCKA---TNPQIKVHRAHFSAVTYVDIKKALENLQQPDENLS 180
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
SV ARQE+DLRIG +FTR+QT Q ++ +S++SYGPCQ PTLGF V+R +I +F
Sbjct: 181 NSVLARQEIDLRIGASFTRFQTLLLQQQFNL--SSIVSYGPCQIPTLGFVVQRQKEIDSF 238
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
E +W + ++ WSRG+IFD+ + F+ E+ V DVQ K
Sbjct: 239 VKEKFWFIQC---VDQTGCEYNWSRGNIFDEMIVLLLFERCFTEQ-AQVTDVQQKEVQKW 294
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
KP L+T+E ++AS L + H AM +AE+LY +GY+SYPRTET ++P +L ++R
Sbjct: 295 KPYPLSTIEFEKLASRKLKVSAHKAMDLAEKLYNRGYISYPRTETNKFPPTINLQNIIRD 354
Query: 352 QESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLD-GDAWRLYDYIVR 409
Q + P WG + + ++ + +PR G KD HPPI P K+ + + W +Y I R
Sbjct: 355 QINHPVWGQYAQNLIHSNFDQPRAGNKDDKAHPPIHPVKMMSESDAQTTQEWDIYQLITR 414
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDL 469
HF+ + ++ V +E F + + F + + S+P + GD+
Sbjct: 415 HFLACCSKNAKGSETTINLQVKEESFYKQGLIITEKNFLEIYPYDEWSQSSVPKYNIGDI 474
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRL 529
I I ++K+ KT+PP LTE+ELI +M+K+GIGTDA+I HIN I +R+Y + G+ +
Sbjct: 475 IQI-NLKVQNGKTSPPKPLTEAELIGMMDKNGIGTDATIHEHINTIQERDYA-IKKGQII 532
Query: 530 VPTSLGIVLVHGYQKIDRELVEPTMRS 556
PT LG+ LV Y+ + L +P +R+
Sbjct: 533 KPTKLGLALVESYEVLGFTLHKPHLRA 559
>gi|268572957|ref|XP_002641457.1| C. briggsae CBR-TOP-3 protein [Caenorhabditis briggsae]
Length = 753
Score = 358 bits (919), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 195/520 (37%), Positives = 279/520 (53%), Gaps = 12/520 (2%)
Query: 44 LFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL-PAFLAN 102
LFG +TSV GH+M F +NW +ELF P + TP +KL L
Sbjct: 45 LFGQRAAISVTSVSGHLMNWQFHENMSNWQTTSMVELFEAPV-RHVVTPDMKLIEKTLRE 103
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWN 162
EA+ + LV+W DCD+EGE I E+++ R N ++RARFS IT I A N
Sbjct: 104 EAQRHDVLVVWTDCDREGEAIGAEIVKVCRES---NRRIDIYRARFSEITKAAITRAARN 160
Query: 163 LVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL-----DASLISYGPCQTPT 217
L++ + +VD R ELDLRIG AFTR QT + ++ L + +ISYG CQ PT
Sbjct: 161 LIRLDEKIVAAVDCRSELDLRIGSAFTRLQTLHLRNRFSSLLGQSDSSKVISYGSCQFPT 220
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKH 277
LGF +R+ I F EP+W L + G V W R +FD+ ++ ++ K
Sbjct: 221 LGFVTDRYKLIENFISEPFWKLAVEHTREGHKVEFLWDRNRLFDRDVVDILHDECKEAKE 280
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V V KSK +PQAL+TVEL ++ S L M MQ+AE+LY++G++SYPRTET
Sbjct: 281 AHVEKVTKKPKSKWRPQALDTVELEKLGISKLRMSAKQTMQVAEKLYSKGFISYPRTETN 340
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQL 396
++P +L ++ QQ S WGD EVL G++ PR G K HPPI P A + L
Sbjct: 341 KFPPGLNLTPLVEQQVQSTTWGDFATEVLQKGVT-PRNGHKSDEAHPPIHPLTFADKNTL 399
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM 456
GD W++Y+ +VRHF+ + D + + V E F + G+ V +
Sbjct: 400 HGDDWKVYELVVRHFLACVSQDAQGEETMVNLRVGSEKFHSSGLRIRDMGYLKVYVYEKW 459
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
N +P + G+ +K+ + KT PPD LTE++LI+LM+K GIGTDA+ HI I
Sbjct: 460 GNRLLPTYNQGERFSDYKLKIGDGKTQPPDLLTEADLIALMDKFGIGTDATHAEHIEKIK 519
Query: 517 QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
R Y+ V +L+P+ LG+ LV GY + + +P +R+
Sbjct: 520 TREYIGVKPDGKLIPSFLGLALVDGYDDMGFAMSKPDLRA 559
>gi|302806755|ref|XP_002985109.1| hypothetical protein SELMODRAFT_121488 [Selaginella moellendorffii]
gi|300147319|gb|EFJ13984.1| hypothetical protein SELMODRAFT_121488 [Selaginella moellendorffii]
Length = 791
Score = 358 bits (918), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 191/513 (37%), Positives = 285/513 (55%), Gaps = 12/513 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+M LDF ++ W DP +LF P + KL + L +A++C++LVL
Sbjct: 55 MTSVSGHLMELDFEEQFRKWYYCDPADLFQAPVRRYVPQDKLGIKRTLEEQARNCQWLVL 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGENI +EV+E +N+N V RARFSA +++I+ A NL +PN +
Sbjct: 115 WLDCDREGENIAYEVVEVC---LNVNRGLNVLRARFSAFIEREIQHAAQNLHRPNRNLSD 171
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKY----GDLDASLISYGPCQTPTLGFCVERHDKI 228
+VDARQE+DLRIG +FTR+QT + ++ + + +++SYGPCQ PTLGF VER+ ++
Sbjct: 172 AVDARQEIDLRIGASFTRFQTMLLKDRFVLPFDEHEKAILSYGPCQFPTLGFVVERYWQV 231
Query: 229 RTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTK 288
+ +PE +W ++ + S W+RGH+FD ++ +E TV V
Sbjct: 232 QAHQPEDFWTINCVYRSENDSASFKWARGHLFDYVAAVAIYEMCVEEPLATVFSVTGRET 291
Query: 289 SKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAV 348
K P LNTVEL++ AS L +G M+ AE LY QG++SYPRTET + EN DL +
Sbjct: 292 RKNPPHPLNTVELVKRASRFLRLGSQETMKAAEELYQQGFISYPRTETDYFSENTDLRRM 351
Query: 349 LRQQESSPDWGDHVREVLSNGISKPRK----GKDVGDHPPITPTKLAT-RTQLDGDAWRL 403
+ +Q P WG++ +L + + R G D HPPI PT+ + Q D +
Sbjct: 352 VEEQTRHPVWGNYAHRLLDSRENLWRHPSNGGHDDKAHPPIHPTRFSDGEPQWRNDHKAV 411
Query: 404 YDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPD 463
Y+ +VRHF+ + V A +A E F+ + + V + ++P+
Sbjct: 412 YELVVRHFLACVSQPAVGYATKAMIDIAGEQFSANGLMVTARNYLEVYRYENWAASTLPN 471
Query: 464 FKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV 523
F G + + +T PP L+E++LI+LM+K GIGTDA++ HI + R Y T
Sbjct: 472 FDLGQQFIPTRLTLDAGRTQPPPLLSEADLIALMDKEGIGTDATMHDHIKKLLDRRYATK 531
Query: 524 TSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
+ R PT+LG LV GY + EL +P +RS
Sbjct: 532 DAQTRFCPTNLGEALVMGYDTMGYELWKPHLRS 564
>gi|242036831|ref|XP_002465810.1| hypothetical protein SORBIDRAFT_01g046210 [Sorghum bicolor]
gi|241919664|gb|EER92808.1| hypothetical protein SORBIDRAFT_01g046210 [Sorghum bicolor]
Length = 860
Score = 358 bits (918), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 197/520 (37%), Positives = 282/520 (54%), Gaps = 25/520 (4%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+M L+F ++ W DP ELF P K K + L EA+ C++LVL
Sbjct: 61 VTSVTGHLMELEFDERFRRWHSCDPAELFHAPVRKSVPQDKQAIKQTLEEEARRCQWLVL 120
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGENI +EV++ NS +WRARFSA+ D++I ++ +L +PN A
Sbjct: 121 WLDCDREGENIAYEVIDVC---TGANSHLNIWRARFSALIDREIHESVQHLGRPNKLFAD 177
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKY-----GDLDASLISYGPCQTPTLGFCVERHDK 227
+VDARQE+DLRIG +FTR+QT + + GD ++SYGPCQ PTLGF VER +
Sbjct: 178 AVDARQEIDLRIGASFTRFQTMLLKDAFVINVTGDDRNLVLSYGPCQFPTLGFIVERFWE 237
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
I+ +PE +W ++ T + S W RGH+FD S ++ E TV +V++
Sbjct: 238 IQAHEPEEFWTINCTHTSDEGTASFGWIRGHLFDYSCAISIYEMCVSEPMATVQNVRNQE 297
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
K K P L+TVEL + AS M H M++AE LY G++SYPRTET + N DL A
Sbjct: 298 KLKYPPYPLSTVELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSPNTDLHA 357
Query: 348 VLRQQESSPDWGDHVREVL----------SNGISKPRKGKDVGDHPPITPTKLAT-RTQL 396
++R+Q + P WG + + +L SNG G D HPPI PTK +
Sbjct: 358 IVREQVNHPVWGAYAQRLLNPEARLWRNPSNG------GHDDKAHPPIHPTKFSEGERNW 411
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM 456
D RLY+ +VRHF+ V + + +A E F + +L + V + +
Sbjct: 412 SPDHIRLYELVVRHFLACCSQPAVGAETTVEIDIAGEQFNASGRVILAKNYLDVYRFDSW 471
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
+P + G ++ + T PP L E++L+S M+K GIGTDA++ HI +
Sbjct: 472 GGTLLPTYNIGQQFVPTTLTLDSGVTRPPPLLAEADLLSCMDKAGIGTDATMHDHIKKLL 531
Query: 517 QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
R Y T R PT+LG LV GY ++ EL +P +RS
Sbjct: 532 DRCYATKDENTRFSPTNLGEALVMGYDEMGYELWKPYLRS 571
>gi|158299059|ref|XP_319175.3| AGAP010028-PA [Anopheles gambiae str. PEST]
gi|157014186|gb|EAA13910.3| AGAP010028-PA [Anopheles gambiae str. PEST]
Length = 1025
Score = 357 bits (917), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 195/524 (37%), Positives = 286/524 (54%), Gaps = 9/524 (1%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ L G + MTSV GH++ +F + W P +LF P K K+
Sbjct: 65 IYEFSYNLHGQSIQMIMTSVSGHLLTHEFLPSFRGWHSCSPEDLFDAPVRKNCPEQYEKI 124
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L E + C L++W DCD+EGENI +E++E R + V+RA+FS IT I
Sbjct: 125 KKTLEREVRGCSALIIWTDCDREGENIGYEIIEVCRA---VKPQLRVFRAKFSEITAPSI 181
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKY-GDLDASLISYGPCQT 215
K A+ NLV+P+ + +V+ R ELDLRIG AFTR+QT Q + D+ +L+SYG CQ
Sbjct: 182 KRAIENLVQPDARQNDAVNVRSELDLRIGAAFTRFQTLRLQKSFPQDISNNLVSYGSCQI 241
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKE 275
PTLGF +R+ +I F P+ +W + LT ++ + V WSR +FDK C + +
Sbjct: 242 PTLGFVAQRYKEIENFIPQTFWKIKLTHTIDDLTVEFHWSRNRLFDKQCCEAYLMLCQTN 301
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
VV+V K+K +P ++TVEL ++ S L M M IAE+LYTQG +SYPRTE
Sbjct: 302 PTAKVVNVTQKPKNKWRPTPMDTVELEKLGSRKLKMNAKQVMTIAEKLYTQGIISYPRTE 361
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRT 394
T + + L +++ Q +S WG +VL G++ PR GK HPPI PTKL T
Sbjct: 362 TNMFTGDMKLAPLVQAQVASDQWGSFAEKVLQWGVN-PRNGKKSDQAHPPIHPTKLP--T 418
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKV-AKFSVADEMFTMEAKYLLHPGFTGVMTW 453
L GD WR+Y+ I RHF+ + D ++ + +E FT + + V +
Sbjct: 419 NLSGDEWRVYELIARHFLACVSRDATGSETIVNVVVAEEEEFTASGLCIHERNYLEVYPY 478
Query: 454 SAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
+ I ++ G + + E TT P+ LTE++LI+LMEKHGIGTDA+ HIN
Sbjct: 479 DRWNAKEIHSYQVGHTFEPTELGLHEGSTTAPNMLTEADLIALMEKHGIGTDATHAEHIN 538
Query: 514 NICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
I +R Y+ LVP +LG+ LV GY+ ++ L P +R+
Sbjct: 539 TIKERGYIGERDRGFLVPGTLGMGLVEGYEMMELRLAHPELRAG 582
>gi|195119033|ref|XP_002004036.1| GI18230 [Drosophila mojavensis]
gi|193914611|gb|EDW13478.1| GI18230 [Drosophila mojavensis]
Length = 1279
Score = 357 bits (916), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 203/563 (36%), Positives = 297/563 (52%), Gaps = 15/563 (2%)
Query: 7 KLVPASEIKLARPSLISLLT--PLQRMNGAC---SVHEWVGPLFGDLVLFKMTSVCGHIM 61
K + +E A ++ LL+ QR G V+++ P+ G MTSV GH+M
Sbjct: 2 KFLNVAEKNDAAKTIAGLLSNGAAQRREGYSVYNKVYDFEAPVRGRNAKMVMTSVSGHLM 61
Query: 62 GLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGE 121
L+F Y NW VDP LF P K + L + L E + C+ L++W DCD+EGE
Sbjct: 62 ELEFLQSYRNWRNVDPRSLFDAPIRKTVSENFLPIKRTLEREVRSCQGLIIWTDCDREGE 121
Query: 122 NICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELD 181
NI +E++E R I TV RA FS IT ++ A+ L P+ ++ +VD R ELD
Sbjct: 122 NIGYEIIEVCRA---IKPNLTVHRATFSEITSVAVRRALQQLGLPDKRQSDAVDVRSELD 178
Query: 182 LRIGCAFTRYQTKFFQGKY-GDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 240
LR G A TR+QT Q + ++ LISYG CQ PTLGF ER+ +I F EP+W +
Sbjct: 179 LRTGAAITRFQTMRLQRLFPANIADKLISYGSCQIPTLGFVAERYKEIEAFVSEPFWKIR 238
Query: 241 LTLNLNGVAVSVTWSRGHIFDKSTCN--VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ + + V W+R +FDK C + E E TV V K K +P L+T
Sbjct: 239 VLHTIEDLTVEFNWARNRLFDKEACENYLLLCLAEPEPRATVESVVVKPKHKWRPTPLDT 298
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VE+ ++ S L + M IAE+LY++G++SYPRTET Q+ + F+L ++ QQ W
Sbjct: 299 VEMEKLGSRKLKLSAKETMTIAEKLYSKGFISYPRTETNQFSKEFELTPLVEQQTGHEAW 358
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + VL G PR G K HPPI PTKL + L G+ R+Y+ +VRHF+ +
Sbjct: 359 GAFAQRVLEWG-PNPRNGNKSDQAHPPIHPTKLVS--NLQGNEARVYELVVRHFLACVSK 415
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D V ++ + +A E F+ + + V + + I +++ G + +
Sbjct: 416 DAVGSETIVSIDIAGEKFSASGLVIHERNYLDVYVYDKWSAKQIHNYQQGQRFEPTEIML 475
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
E TT P LTE++LI+LMEKHGIGTDA+ HIN I +R Y+ V LVP +G+
Sbjct: 476 HEGATTAPPLLTEADLIALMEKHGIGTDATHAEHINTIKERGYIGVVEKGALVPGVIGMG 535
Query: 538 LVHGYQKIDRELVEPTMRSAYRV 560
L GY ++ L +P +R+ +
Sbjct: 536 LYEGYDAMELTLAKPLLRAEFEA 558
>gi|290980003|ref|XP_002672722.1| predicted protein [Naegleria gruberi]
gi|284086301|gb|EFC39978.1| predicted protein [Naegleria gruberi]
Length = 1015
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 197/508 (38%), Positives = 286/508 (56%), Gaps = 12/508 (2%)
Query: 58 GHIMGLDFTSKYNNWDKVDPLELF--SCPTEKREATPKLKLPAFLANEAKDCEFLVLWLD 115
GH+M L F K +W DP+ L + P + L++ L EA+ L+LWLD
Sbjct: 79 GHLMELGFDPKLKSWTSCDPITLMDPATPVFRNVPEKNLEIQQNLEQEARYATKLLLWLD 138
Query: 116 CDKEGENICFEVMEA---VRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
CD+EGENI FEV+E V ++I + ++ RARFS T I A+ NL +PN+ ++
Sbjct: 139 CDREGENIAFEVIEVCKKVNRSLSIEN-DSILRARFSEFTAAAINRAIRNLERPNVLDSM 197
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+VD RQELDLRIG +FTR+Q+ + K+ + A ISYGPCQ PTLGF V+R I+ F+
Sbjct: 198 AVDTRQELDLRIGASFTRFQSLRLKKKFQGITADYISYGPCQFPTLGFVVKRDLIIKNFE 257
Query: 233 PEPYWLLDLTLNLNGVA-VSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
E +W L+ T ++ W RG +FD+ TC V ++ + + VV+V+ + K
Sbjct: 258 SESFWTLNCTHDMGEEGKAQFLWKRGRLFDQLTCLVIYELCVEAQRARVVNVEKKRRYKY 317
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP--ENFDLVAVL 349
+P LNT+EL ++AS L MG H M++AE LY +G++SYPRTET Y ++ DL ++
Sbjct: 318 RPDPLNTIELQKLASQKLKMGSHETMKVAESLYNKGFISYPRTETNNYNQFQDDDLKRLV 377
Query: 350 RQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIV 408
+ S+P WG + ++L+ G KP GK D HPPI P K + D LY+ I
Sbjct: 378 NEHTSNPTWGGYASDLLNGGYQKPPSGKQDDKAHPPIHPLKGDCNSN-DSKEQALYELIA 436
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGD 468
RHF+ D V + S+A+E FT + F + + ++SIP F G
Sbjct: 437 RHFLACCSKDAVGAETKVIISIANEEFTCSGLMVEQKNFLEIWKYDRWSDKSIPVFNAGQ 496
Query: 469 LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRR 528
S+ M +T PP +L+ES+LIS M+ +GIGTDA++ HI I +R YV + G R
Sbjct: 497 EFIPTSLLMDHGETRPPPHLSESDLISAMDSNGIGTDATVAQHIKTIQERGYV-IKKGNR 555
Query: 529 LVPTSLGIVLVHGYQKIDRELVEPTMRS 556
T+LG+ L+ GY I EL P +RS
Sbjct: 556 FEATNLGMALLQGYDLIGYELSTPNLRS 583
>gi|340376735|ref|XP_003386887.1| PREDICTED: DNA topoisomerase 3-alpha-like [Amphimedon
queenslandica]
Length = 981
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 198/530 (37%), Positives = 298/530 (56%), Gaps = 24/530 (4%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ + G MTSV GH+M LDF Y NW P++LF EK + +
Sbjct: 45 IYEFNLHILGREHQMVMTSVSGHLMQLDFIQIYRNWQNCAPIKLFDAQVEKSVQPDFIPI 104
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENI-------CFEVMEAVRHQININSPKTVWRARFS 149
+ E + C+ ++LW D D+EGE+I CFEV + +R + RARFS
Sbjct: 105 KRTIQREIRGCQDVILWTDGDREGEDIAQEIVDVCFEVRQRLR----------IHRARFS 154
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLI 208
IT + I A NL + +V+ARQELDLRIGCAFTR+QT + + + L L+
Sbjct: 155 EITPQSITRACTNLTVLDKRMVDAVEARQELDLRIGCAFTRFQTMRLRKVFPNILSDQLV 214
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVF 268
SYGPCQ PTLGF V+R+ +I+ F PE ++ + +T + VS W R +F+ + C +
Sbjct: 215 SYGPCQFPTLGFVVDRYKEIQAFVPETFYKITVTHQASNENVSFNWKRVRLFNHTCCLIL 274
Query: 269 FKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGY 328
++ + VVD++S KSK +P L+TVEL ++ S L + M+IAE+LYTQG+
Sbjct: 275 YQLCMENPTARVVDIKSKPKSKWRPCPLDTVELEKLCSRKLRISAKETMKIAEKLYTQGF 334
Query: 329 VSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITP 387
+SYPRTET +PE+FDLV+++R+Q WG VLS G + PR G+ + HPPI P
Sbjct: 335 ISYPRTETNIFPESFDLVSLIREQTQDHRWGGFAGNVLSVGPT-PRNGQKTDNAHPPIHP 393
Query: 388 TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
K L G+ RLY+++VRHF+ + + + + E F + + +
Sbjct: 394 VKYT--NSLTGNEQRLYEFVVRHFLACCSKNAEGNETTVEIEIGGERFIAKGLVITARNY 451
Query: 448 TGVMTWSAMKNESIPDFK-PGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDA 506
V + ++++P ++ G +P +++M+E +T PP L E++LI+LM+KHGIGTDA
Sbjct: 452 LDVYIYDKWADKTLPQYQLNGTFLP-SAIEMIEGETNPPSLLQEADLIALMDKHGIGTDA 510
Query: 507 SIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
+ HI I R+YV V S VP LGI LV GY + +L +P +R+
Sbjct: 511 THAEHIETIKTRSYVGVQSDGSFVPGELGIGLVEGYDSMGYQLSKPKLRA 560
>gi|224083488|ref|XP_002307047.1| predicted protein [Populus trichocarpa]
gi|222856496|gb|EEE94043.1| predicted protein [Populus trichocarpa]
Length = 910
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 195/531 (36%), Positives = 295/531 (55%), Gaps = 14/531 (2%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
+ E+ + G +TSV GH+M ++F ++ W DP +L++ P K KL +
Sbjct: 38 IFEFNYSINGQQCHMLVTSVTGHLMEVEFEDRFRKWHSCDPADLYTAPVRKYVPEDKLDI 97
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L EA+ C +LVLWLDCD+EGENI FEVME + +N T+ RARFSA+ ++DI
Sbjct: 98 KRTLEEEARRCHWLVLWLDCDREGENIAFEVMEVCK---GVNRNLTIRRARFSALIERDI 154
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKY----GDLDASLI-SYG 211
A NL+ PN + + +VDARQE+DLRIG +FTR+QT + ++ D +L+ SYG
Sbjct: 155 HEAAQNLIAPNQWFSDAVDARQEIDLRIGASFTRFQTMLLRDRFVIDSAQDDRNLVLSYG 214
Query: 212 PCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKA 271
PCQ PTLGF VER+ +I++ +PE +W ++ T + S W RGH+FD ++ + ++
Sbjct: 215 PCQFPTLGFVVERYWEIQSHEPEEFWTINCTHRSDEGLASFNWMRGHLFDYTSSVILYEM 274
Query: 272 VEKEKHVTVVDV-QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVS 330
+E TV + K K P L+T+EL + AS M M++AE LY G++S
Sbjct: 275 CVEEPTATVSNRNHQQEKLKYPPYPLSTIELEKRASRYFRMSSEQTMKVAEDLYQAGFIS 334
Query: 331 YPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRK----GKDVGDHPPIT 386
YPRTET + DL ++++ + P WG + + +L G R G D HPPI
Sbjct: 335 YPRTETDSFSSRTDLHTIVQEHQEHPVWGSYAQRLLDPGAGLWRNPSNGGHDDKAHPPIH 394
Query: 387 PTKL-ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHP 445
PTK A ++ D RLY+ +VRHF+ + V + V + +A E F+ + +L
Sbjct: 395 PTKFSAGESRWSQDHHRLYELVVRHFLACVSQPAVGAETVVEIDIAGERFSASGRVILAK 454
Query: 446 GFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
+ V + + + IP + G ++ + T PP L+E++L+S M+K GIGTD
Sbjct: 455 NYLDVYRFESWGDSMIPTYLQGQQFIPATLTLDSGVTRPPPLLSEADLLSCMDKAGIGTD 514
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
A++ HI + R YVT + R PT+LG LV GY + EL +P +RS
Sbjct: 515 ATMHDHIKKLLDRFYVTKDANTRFSPTNLGEALVMGYDDMGYELWKPNLRS 565
>gi|402593065|gb|EJW86992.1| DNA topoisomerase [Wuchereria bancrofti]
Length = 795
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 193/512 (37%), Positives = 285/512 (55%), Gaps = 7/512 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH++ DF S + NW + LF +K + A L E + + LV+
Sbjct: 75 MTSVSGHLLQHDFPSSFKNWTETPIKVLFDVNVQKSTIPGMEDIRATLIEEIRKSDLLVI 134
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I EV+ +V Q+N N V+RARFS IT+ + A+ NLV+ +
Sbjct: 135 WTDCDREGEAIGAEVV-SVCTQVNCNLD--VYRARFSEITNAAVNRALNNLVRLDQRLVD 191
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDL--DASLISYGPCQTPTLGFCVERHDKIRT 230
+V+ R ELDLRIG AFTR QT + +G++ D +++SYG CQ PTLGF VER+ I+
Sbjct: 192 AVECRSELDLRIGAAFTRLQTLHLRNNFGNIFRDKNIVSYGSCQFPTLGFIVERYKAIKE 251
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
F E +W + + + + V W R +FD + V E+ + V+ V KSK
Sbjct: 252 FISETFWKISMKHTRDDILVEFFWDRQRLFDHNVVQVLLDDCEEAREARVLSVIRKPKSK 311
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
+P AL+TVEL ++A L M +AERLY +GY+SYPRTET ++P++ DL ++
Sbjct: 312 WRPFALDTVELEKLAVRKLKFSAKETMVVAERLYNKGYISYPRTETNKFPKDMDLNIYVQ 371
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVR 409
QQ S +WGD +E+ G S PR G + HPPI P K AT +L G W LY++IVR
Sbjct: 372 QQTVSGEWGDFAQEIAVRGPS-PRNGSKTDEAHPPIHPLKFATANELIGLEWSLYEFIVR 430
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDL 469
HF+ L D + + V +E FT + G+ V + ++ +P ++ +L
Sbjct: 431 HFLACLSVDAKGQETKVQVRVGNENFTASGLIVEDYGYLNVYKYDKWSDKILPSYRENEL 490
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRL 529
I +++ E +T PP L E++LI+LM+K+GIGTDA+ HI I R Y + + R
Sbjct: 491 ITSYQLQITEGQTQPPQLLNEADLIALMDKYGIGTDATHAEHIETIKTRQYAALNNDGRF 550
Query: 530 VPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
VP +G+ LV GY ++ + +P MR+ Q
Sbjct: 551 VPGYIGLALVDGYDQMGYAMSKPHMRADLESQ 582
>gi|297721829|ref|NP_001173278.1| Os03g0165000 [Oryza sativa Japonica Group]
gi|255674230|dbj|BAH92006.1| Os03g0165000 [Oryza sativa Japonica Group]
Length = 928
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 193/520 (37%), Positives = 286/520 (55%), Gaps = 25/520 (4%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+M L+F ++ W DP +LF P K K + L EA+ C++LVL
Sbjct: 64 VTSVTGHLMELEFDDRFRRWHSCDPADLFHAPVRKSVPQDKQDIKRTLEEEARKCQWLVL 123
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGENI +EV++ NS +WRARFSA+ D++I A+ +L +PN A
Sbjct: 124 WLDCDREGENIAYEVIDIC---AGANSRLNIWRARFSALIDREIHEAVQHLDRPNKLFAD 180
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKY-----GDLDASLISYGPCQTPTLGFCVERHDK 227
+VDARQE+DLRIG +FTR+QT + + GD ++SYGPCQ PTLGF VER +
Sbjct: 181 AVDARQEIDLRIGASFTRFQTMLLKDAFVLDDTGDDRNIILSYGPCQFPTLGFIVERFWE 240
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
I+ +PE +W ++ + + S W RGH+FD S+ V ++ +E TV +V++
Sbjct: 241 IQAHEPEEFWTINCSHTSDEGTASFGWIRGHLFDYSSAVVIYEMCVEEPMATVQNVRNQE 300
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
K K P L+T+EL + AS M H M++AE LY G++SYPRTET + N DL +
Sbjct: 301 KLKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSPNTDLHS 360
Query: 348 VLRQQESSPDWGDHVREVL----------SNGISKPRKGKDVGDHPPITPTKL-ATRTQL 396
++ +Q + P+WG + + +L SNG G D HPPI PTK A T
Sbjct: 361 IVHEQVAHPNWGTYAQRLLDPEARLWRNPSNG------GHDDKAHPPIHPTKFSAGETNW 414
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM 456
+ +LY+ +VRHF+ V + + +A E F + +L + V + +
Sbjct: 415 TDNHKKLYELVVRHFLACCSQPAVGAETTVEIDIAGEQFNASGRVVLAKNYLDVYRFDSW 474
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
+P + G ++ + T PP L E++L+ M+K GIGTDA++ HI +
Sbjct: 475 GGTLLPTYIIGQQFVPTTLTLDSGMTRPPPLLAEADLLGCMDKAGIGTDATMHDHIKKLL 534
Query: 517 QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
R Y T + R PT+LG LV GY ++ EL +P +RS
Sbjct: 535 DRCYATKDANTRFSPTNLGEALVMGYDEMGYELWKPYLRS 574
>gi|255572920|ref|XP_002527391.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
gi|223533243|gb|EEF34998.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
Length = 833
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 195/515 (37%), Positives = 290/515 (56%), Gaps = 15/515 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+M L+F ++ W DP +L+ P K K + L EA+ C++L+L
Sbjct: 57 VTSVTGHLMELEFDDRFRKWHSCDPADLYHAPVRKFVPEDKTNIKRTLEEEARRCQWLIL 116
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGENI FEV++ R + N TV RARFSA+ D++I A NLV PN + +
Sbjct: 117 WLDCDREGENIAFEVVDVCR---SANRYLTVRRARFSALIDREIHEAAQNLVSPNQWFSD 173
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKY----GDLDASLI-SYGPCQTPTLGFCVERHDK 227
+VDARQE+DLRIG +FTR+QT + K+ D +L+ SYGPCQ PTLGF VER+ +
Sbjct: 174 AVDARQEIDLRIGASFTRFQTLLLRDKFVIDSAQDDRNLVLSYGPCQFPTLGFIVERYWE 233
Query: 228 IRTFKPEPYWLLDLT-LNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSS 286
I++ + E +W ++ + ++ G+A + +W RGH+FD ++ + ++ E TV VQ
Sbjct: 234 IQSHESEEFWTINCSHTSVEGIA-NFSWMRGHLFDYTSAVILYELCVLEPTATVTKVQQK 292
Query: 287 TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLV 346
K K P L+T+EL + AS M M++AE LY G++SYPRTET + DL
Sbjct: 293 EKQKYPPYPLSTIELEKRASRYFHMSSEQTMKVAEDLYQSGFISYPRTETDGFSSRTDLH 352
Query: 347 AVLRQQESSPDWGDHVREVLSNGISKPRK----GKDVGDHPPITPTKLA-TRTQLDGDAW 401
++R Q++ P WG + + +L G R G D HPPI PTK + T D
Sbjct: 353 TIVRDQQAHPIWGSYAQRLLDPGTGLWRNPSTGGHDDKAHPPIHPTKFSPGETGWSQDHH 412
Query: 402 RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI 461
R+Y+ +VRHF+ + V + + +A E F+ + +L + V + + I
Sbjct: 413 RVYELVVRHFLACVSQPAVGAETTVEIDIAGEQFSASGRVILAKNYLDVYRFESWGGSMI 472
Query: 462 PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
P + G ++ + T PP L+ES+L+S M+K GIGTDA++ HI + R Y
Sbjct: 473 PTYVHGQQFMPTTLTLDSGVTRPPPLLSESDLLSCMDKAGIGTDATMHDHIKKLLDRFYA 532
Query: 522 TVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
T + R PT+LG LV GY + EL +P +RS
Sbjct: 533 TKDANTRFSPTNLGEALVMGYDDMGYELWKPNLRS 567
>gi|302774743|ref|XP_002970788.1| hypothetical protein SELMODRAFT_94303 [Selaginella moellendorffii]
gi|300161499|gb|EFJ28114.1| hypothetical protein SELMODRAFT_94303 [Selaginella moellendorffii]
Length = 794
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 191/513 (37%), Positives = 283/513 (55%), Gaps = 12/513 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+M LDF ++ W DP +LF P + KL + L +A++C++LVL
Sbjct: 55 MTSVSGHLMELDFEEQFRKWYYCDPADLFQAPVRRYVPQDKLGIKRTLEEQARNCQWLVL 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGENI +EV+E +N+N V RARFSA +++I+ A NL +PN +
Sbjct: 115 WLDCDREGENIAYEVVEVC---LNVNRGLNVLRARFSAFIEREIQHAAQNLHRPNRNLSD 171
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKY----GDLDASLISYGPCQTPTLGFCVERHDKI 228
+VDARQE+DLRIG +FTR+QT + ++ + + +++SYGPCQ PTLGF VER+ ++
Sbjct: 172 AVDARQEIDLRIGASFTRFQTMLLKDRFVLPFDEHEKAILSYGPCQFPTLGFVVERYWQV 231
Query: 229 RTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTK 288
+ +PE +W ++ + S W+RGH+FD ++ +E TV V
Sbjct: 232 QAHQPEDFWTINCVYRSENDSASFKWTRGHLFDYVAAVSIYEMCVEEPLATVFSVTGRET 291
Query: 289 SKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAV 348
K P LNTVEL++ AS L G M+ AE LY QG++SYPRTET + EN DL +
Sbjct: 292 RKNPPHPLNTVELVKRASRFLRFGSQETMKAAEELYQQGFISYPRTETDYFSENTDLRRM 351
Query: 349 LRQQESSPDWGDHVREVL---SNGISKPRK-GKDVGDHPPITPTKLAT-RTQLDGDAWRL 403
+ +Q P WG++ ++ N P G D HPPI PT+ + Q D +
Sbjct: 352 VEEQTRHPVWGNYAHRLVDPRENLWRHPSNGGHDDKAHPPIHPTRFSDGEPQWRNDHKAV 411
Query: 404 YDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPD 463
Y+ +VRHF+ + V A +A E F+ + + V + ++P+
Sbjct: 412 YELVVRHFLACVSQPAVGYATKAMIDIAGEQFSANGLMVTARNYLEVYRYENWAASTLPN 471
Query: 464 FKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV 523
F G + + +T PP L+E++LI+LM+K GIGTDA++ HI + R Y T
Sbjct: 472 FDLGQQFIPTRLTLDAGRTQPPPLLSEADLIALMDKEGIGTDATMHDHIKKLLDRRYATK 531
Query: 524 TSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
+ R PT+LG LV GY + EL +P +RS
Sbjct: 532 DAQTRFCPTNLGEALVMGYDTMGYELWKPHLRS 564
>gi|198473327|ref|XP_001356254.2| GA10090 [Drosophila pseudoobscura pseudoobscura]
gi|198139406|gb|EAL33317.2| GA10090 [Drosophila pseudoobscura pseudoobscura]
Length = 1178
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 197/531 (37%), Positives = 282/531 (53%), Gaps = 16/531 (3%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++++ P+ G MTSV GH+M L+F Y NW VDP LF P K L +
Sbjct: 37 IYDFEAPVRGQNAKMVMTSVSGHLMQLEFQVSYRNWRVVDPGSLFDAPVRKSVGESYLPI 96
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L E + C+ L++W DCD+EGENI +E++ R I T++RA FS IT +
Sbjct: 97 KRTLEREVRGCQGLIIWTDCDREGENIGYEIISVCRA---IKPNLTIYRASFSEITTIAV 153
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYGP 212
+ A+ L +P+ ++ +VD R ELDLR G A TR+QT + F K D LISYG
Sbjct: 154 RRALQQLGQPDKRQSDAVDVRTELDLRTGAAITRFQTMRLQRLFPEKIAD---KLISYGS 210
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVF--FK 270
CQ PTLGF ER+ +I F EP+W + + + + V W+R +FDK C +
Sbjct: 211 CQIPTLGFVAERYKEIEAFVSEPFWKIRVLHTIEDLTVEFNWARNRLFDKEACENYHLLC 270
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVS 330
E E TV V K K +P L+TVE+ ++ S L + M IAE+LY++G++S
Sbjct: 271 LSEPEPRATVESVTVKPKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTIAEKLYSKGFIS 330
Query: 331 YPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTK 389
YPRTET Q+ + F+L +++ Q DWG R VL G PR G K HPPI PTK
Sbjct: 331 YPRTETNQFSKEFELAPLVQLQAGHSDWGAFARRVLDWG-PNPRNGSKSDQAHPPIHPTK 389
Query: 390 LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTG 449
A L G+ R+Y+ +VRHF+ + D V ++ V +A E FT + +
Sbjct: 390 SAD--NLQGNEARVYELVVRHFLACVSKDAVGSETVVNIDIAGEKFTANGLVIHERNYLD 447
Query: 450 VMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
V + + I ++ V + E TT P LTE++LI+LMEKHGIGTDA+
Sbjct: 448 VYVYDKWSAKRIHHYERDQRFEPTEVSLHEGATTAPPLLTEADLIALMEKHGIGTDATHA 507
Query: 510 VHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRV 560
HIN I +R Y+ V LVP +G+ L GY ++ L +P +R+ +
Sbjct: 508 EHINTIKERGYIGVLDKGALVPGVIGMGLYEGYDAMELALAKPQLRAEFEA 558
>gi|194383072|dbj|BAG59092.1| unnamed protein product [Homo sapiens]
Length = 906
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 194/484 (40%), Positives = 275/484 (56%), Gaps = 7/484 (1%)
Query: 75 VDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQ 134
+PL LF EK + + L E + C+ LV+W DCD+EGENI FE++ +
Sbjct: 13 CNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGENIGFEIIHVCK-- 70
Query: 135 ININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTK 194
+ V RARFS IT ++ A NL +P+ + +VD RQELDLRIG AFTR+QT
Sbjct: 71 -AVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTL 129
Query: 195 FFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVT 253
Q + + L LISYG CQ PTLGF VER I+ F PE + + +T + V
Sbjct: 130 RLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFN 189
Query: 254 WSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGP 313
W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+TVEL ++AS L +
Sbjct: 190 WKRHRLFNHTACLVLYQLCVEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINA 249
Query: 314 HHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKP 373
M+IAE+LYTQGY+SYPRTET +P + +L ++ QQ P WG + +L G P
Sbjct: 250 KETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTP 309
Query: 374 RKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVAD 432
R G K HPPI PTK L GD RLY++IVRHF+ D + + +A
Sbjct: 310 RNGNKSDQAHPPIHPTKYT--NNLQGDEQRLYEFIVRHFLACCSQDAQGQETTVEIDIAQ 367
Query: 433 EMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESE 492
E F +L + V + ++ +P ++ G +V+MV+ +T+PP LTE++
Sbjct: 368 ERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQPSTVEMVDGETSPPKLLTEAD 427
Query: 493 LISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEP 552
LI+LMEKHGIGTDA+ HI I R YV +T +R +P LG+ LV GY + E+ +P
Sbjct: 428 LIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMGLVEGYDSMGYEMSKP 487
Query: 553 TMRS 556
+R+
Sbjct: 488 DLRA 491
>gi|26325928|dbj|BAC26718.1| unnamed protein product [Mus musculus]
Length = 839
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 191/459 (41%), Positives = 270/459 (58%), Gaps = 7/459 (1%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L E C+ LV+W DCD+EGENI FE++ + + V RARFS IT ++ A
Sbjct: 18 LERETHHCQALVIWTDCDREGENIGFEIIHVCK---AVKPNLRVLRARFSEITPHAVRTA 74
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTL 218
NL +P+ + +VD RQELDLRIG AFTR+QT Q + + L LISYG CQ PTL
Sbjct: 75 CENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTL 134
Query: 219 GFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHV 278
GF VER I+ F PE + + +T + V W R +F+ + C V ++ ++
Sbjct: 135 GFVVERFKAIQAFVPEVFHKIKVTHDHKDGTVEFNWKRYRLFNHTACLVLYQLCMEDPMA 194
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQ 338
TVV+V+S KSK +PQAL+TVEL ++AS L + M+IAE+LYTQGY+SYPRTET
Sbjct: 195 TVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNI 254
Query: 339 YPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLD 397
+P++ +LVA++ QQ P WG + +L G PR G K HPPI PTK + L
Sbjct: 255 FPKDLNLVALVEQQTVDPHWGAFAQTILERGGPTPRNGSKSDQAHPPIHPTKYT--SGLQ 312
Query: 398 GDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK 457
GD RLY++IVRHF+ D + + +A E F +L + V +
Sbjct: 313 GDDRRLYEFIVRHFLACCSQDAQGQETTVEIDIAQERFVAHGLIILARNYLDVYPYDHWS 372
Query: 458 NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQ 517
++ +P ++ G +V+MV+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I
Sbjct: 373 DKLLPVYEQGSHFQPSTVEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKA 432
Query: 518 RNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
R YV +TS +R +P LG+ LV GY + E+ +P +R+
Sbjct: 433 RMYVGLTSDKRFLPGHLGMGLVEGYDSMGYEMSKPDLRA 471
>gi|392570043|gb|EIW63216.1| prokaryotic type I DNA topoisomerase [Trametes versicolor FP-101664
SS1]
Length = 961
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 199/518 (38%), Positives = 277/518 (53%), Gaps = 17/518 (3%)
Query: 50 LFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEF 109
+ +TSV GH+M DF Y+ W DP LF P E R + L EA+ +
Sbjct: 48 FYTVTSVTGHVMEHDFNIMYSKWTSCDPFALFEAPVECRVKKDADTIAENLKTEARRAQL 107
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
L++W DCD+EGENI E+M+ R N+ TV RARFSAI + I A N V+ ++
Sbjct: 108 LMIWTDCDREGENIGAEIMKICR---KANANITVRRARFSAIIAQQIHHAAQNPVQLDMA 164
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
+A +V+ R LDLRIG AFTR QT Q ++ L LISYGPCQ PTLGF V R++K++
Sbjct: 165 QANAVETRILLDLRIGSAFTRLQTLNLQNRHEALKRELISYGPCQFPTLGFVVARYNKLK 224
Query: 230 TFKPEPYWLLDLTL------NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV 283
FKPEP+W + L+L + +G TW RGHIFD + + A V V
Sbjct: 225 NFKPEPFWYIYLSLTRPSATDSDGEETVFTWRRGHIFDVNNAMALYDAALAHAMARVSKV 284
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
K KP L TV+L + S L + P + IAE LY +G++SYPRTET Y F
Sbjct: 285 TVKDTKKWKPLPLTTVDLQKAGSRLLKISPKRVLDIAESLYQRGFLSYPRTETDVYDPQF 344
Query: 344 DLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWR 402
D + ++ +Q + P WG + + G + PRKGK D HPPI PT A L GD R
Sbjct: 345 DFMTLIGKQTADPAWGGFAGGLQNGGFNAPRKGKHDDHAHPPIHPTAHA--GNLAGDEKR 402
Query: 403 LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP 462
+Y+YI R F+ + D +E F + + V + ++ +P
Sbjct: 403 VYEYITRRFLASCSKDATGWLTTIDVQYGEEEFYATGLVIRERNYLDVFPYDKWADKEVP 462
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT 522
+F+ G+ ++ E +T+ P LTE++L+SLM++HGIGTDA+I HI I R YV
Sbjct: 463 NFQEGEAFVPTECRLDEGQTSKPTLLTEADLVSLMDEHGIGTDATIAQHIQTIIDRGYVI 522
Query: 523 ---VTSGRRLVPTSLGIVLVHGYQKI--DRELVEPTMR 555
+ + LVP++LGI LV GY I D L +P +R
Sbjct: 523 ERMQGATKYLVPSTLGIGLVEGYDAIGFDHSLSKPELR 560
>gi|410051780|ref|XP_003953166.1| PREDICTED: DNA topoisomerase 3-alpha [Pan troglodytes]
Length = 906
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 194/484 (40%), Positives = 275/484 (56%), Gaps = 7/484 (1%)
Query: 75 VDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQ 134
+PL LF EK + + L E + C+ LV+W DCD+EGENI FE++ +
Sbjct: 13 CNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGENIGFEIIHVCK-- 70
Query: 135 ININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTK 194
+ V RARFS IT ++ A NL +P+ + +VD RQELDLRIG AFTR+QT
Sbjct: 71 -AVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTL 129
Query: 195 FFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVT 253
Q + + L LISYG CQ PTLGF VER I+ F PE + + +T + V
Sbjct: 130 RLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHRDGIVEFN 189
Query: 254 WSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGP 313
W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+TVEL ++AS L +
Sbjct: 190 WKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINA 249
Query: 314 HHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKP 373
M+IAE+LYTQGY+SYPRTET +P + +L ++ QQ P WG + +L G P
Sbjct: 250 KETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTP 309
Query: 374 RKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVAD 432
R G K HPPI PTK L GD RLY++IVRHF+ D + + +A
Sbjct: 310 RNGNKSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQDAQGQETTVEIDIAQ 367
Query: 433 EMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESE 492
E F +L + V + ++ +P ++ G +V+MV+ +T+PP LTE++
Sbjct: 368 ERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQPSTVEMVDGETSPPKLLTEAD 427
Query: 493 LISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEP 552
LI+LMEKHGIGTDA+ HI I R YV +T +R +P LG+ LV GY + E+ +P
Sbjct: 428 LIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMGLVEGYDSMGYEMSKP 487
Query: 553 TMRS 556
+R+
Sbjct: 488 DLRA 491
>gi|195031343|ref|XP_001988332.1| GH11108 [Drosophila grimshawi]
gi|193904332|gb|EDW03199.1| GH11108 [Drosophila grimshawi]
Length = 1269
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 193/528 (36%), Positives = 283/528 (53%), Gaps = 10/528 (1%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
V+++ + G MTSV GH+M +DF + Y NW VDP LF P K +
Sbjct: 37 VYDFEAQVRGQNAKMVMTSVSGHLMQVDFLASYRNWLNVDPRSLFDAPIRKTVGENYEPI 96
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L E + C+ L++W DCD+EGENI +E++ R I TV+RA FS IT +
Sbjct: 97 KRTLEREVRGCQGLIIWTDCDREGENIGYEIINVCRA---IKPSLTVYRASFSEITTASV 153
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQT 215
+ A+ L +P+ ++ +VD R ELDLR G A TR+QT Q + + + +LISYG CQ
Sbjct: 154 RRALQQLGQPDKRQSDAVDVRTELDLRTGAAITRFQTMRLQRLFPEKIARNLISYGSCQI 213
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAV--E 273
PTLGF ER+ +I F EP+W + + + + V W+R +FDK C + E
Sbjct: 214 PTLGFVAERYKEIEAFVSEPFWKIRVLHTIEDLTVEFNWARNRLFDKEACENYLLLCMSE 273
Query: 274 KEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333
E TV V K K +P L+TVE+ ++ S L + M IAE+LY+QG +SYPR
Sbjct: 274 PEPRATVESVTVKPKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTIAEKLYSQGIISYPR 333
Query: 334 TETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLAT 392
TET Q+ + F+L ++ QQ S WG + VL G PR G K HPPI P KL T
Sbjct: 334 TETNQFSKEFELAPIVAQQTSHEAWGAFAQRVLEWG-PNPRNGTKSDQAHPPIHPIKLVT 392
Query: 393 RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
L G+ R+Y+ +VRHF+ + D V ++ + +A E F+ + + V
Sbjct: 393 --GLQGNEARVYELVVRHFLACVSKDAVGSETIVNIDIAGEKFSANGLVIHERNYLDVYV 450
Query: 453 WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHI 512
+ + I +++ G + + E TT P LTE++LI+LMEKHGIGTDA+ HI
Sbjct: 451 YENWSAKQIHNYERGQRFEPTEIMLHEGATTAPPLLTEADLIALMEKHGIGTDATHAEHI 510
Query: 513 NNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRV 560
N + +R Y+ V LVP +G+ L GY ++ L +P +R+ +
Sbjct: 511 NTVKKRGYIGVVDKGALVPGIIGMGLYEGYDAMELALAKPLLRAEFEA 558
>gi|397476897|ref|XP_003809827.1| PREDICTED: DNA topoisomerase 3-alpha isoform 2 [Pan paniscus]
Length = 906
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 194/484 (40%), Positives = 275/484 (56%), Gaps = 7/484 (1%)
Query: 75 VDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQ 134
+PL LF EK + + L E + C+ LV+W DCD+EGENI FE++ +
Sbjct: 13 CNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGENIGFEIIHVCK-- 70
Query: 135 ININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTK 194
+ V RARFS IT ++ A NL +P+ + +VD RQELDLRIG AFTR+QT
Sbjct: 71 -AVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTL 129
Query: 195 FFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVT 253
Q + + L LISYG CQ PTLGF VER I+ F PE + + +T + V
Sbjct: 130 RLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHRDGIVEFN 189
Query: 254 WSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGP 313
W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+TVEL ++AS L +
Sbjct: 190 WKRHRLFNHTACLVLYQLCMEDPIATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINA 249
Query: 314 HHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKP 373
M+IAE+LYTQGY+SYPRTET +P + +L ++ QQ P WG + +L G P
Sbjct: 250 KETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTP 309
Query: 374 RKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVAD 432
R G K HPPI PTK L GD RLY++IVRHF+ D + + +A
Sbjct: 310 RNGNKSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQDAQGQETTVEIDIAQ 367
Query: 433 EMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESE 492
E F +L + V + ++ +P ++ G +V+MV+ +T+PP LTE++
Sbjct: 368 ERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQPSTVEMVDGETSPPKLLTEAD 427
Query: 493 LISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEP 552
LI+LMEKHGIGTDA+ HI I R YV +T +R +P LG+ LV GY + E+ +P
Sbjct: 428 LIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMGLVEGYDSMGYEMSKP 487
Query: 553 TMRS 556
+R+
Sbjct: 488 DLRA 491
>gi|308483746|ref|XP_003104074.1| CRE-TOP-3 protein [Caenorhabditis remanei]
gi|308258382|gb|EFP02335.1| CRE-TOP-3 protein [Caenorhabditis remanei]
Length = 780
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 190/524 (36%), Positives = 278/524 (53%), Gaps = 11/524 (2%)
Query: 44 LFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL-PAFLAN 102
LFG +TSV GH+M F +NW +ELF P + P +KL L
Sbjct: 45 LFGQRTAVSVTSVSGHMMNFQFHENMSNWQTTSMVELFEAPV-RHVVMPDMKLIEQTLRE 103
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWN 162
EA+ + LV+W DCD+EGE I E+++ R N ++RARFS IT I A N
Sbjct: 104 EAQRHDLLVVWTDCDREGEAIGAEIVKVCRES---NRRIDIFRARFSEITKTAITRAAQN 160
Query: 163 LVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL-----DASLISYGPCQTPT 217
L++ + +VD R ELDLRIG AFTR QT + ++ DL ++ +ISYG CQ PT
Sbjct: 161 LIRLDERTVAAVDCRSELDLRIGSAFTRLQTLHLRNRFRDLLGQNENSKVISYGSCQFPT 220
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKH 277
LGF +R+ I F EP+W L + + G V W R +FD+ ++ ++ K
Sbjct: 221 LGFVTDRYKLIENFISEPFWKLSVEHSREGHKVEFLWDRNRLFDREVVDILHDECKEAKE 280
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V V KSK +PQ L+TVEL ++ S L M MQ+AE+LY++G++SYPRTET
Sbjct: 281 AHVEKVTKKPKSKWRPQGLDTVELEKLGISKLRMSAKQTMQVAEKLYSKGFISYPRTETN 340
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLD 397
++P +L ++ QQ S WGD EV N + HPPI P A ++QL
Sbjct: 341 KFPAGLNLTPLVEQQTHSNIWGDFATEVFINFLINYYPSP-FSAHPPIHPLTFADKSQLH 399
Query: 398 GDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK 457
GD W++Y+ +VRHF+ + D + + S+ E F + G+ V +
Sbjct: 400 GDDWKVYELVVRHFLACVSQDAQGEETMVNLSIGSEKFHSSGLRIRDMGYLKVYIYEKWG 459
Query: 458 NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQ 517
N +P + + +K+ + KT PPD LTE++LI+LM+K GIGTDA+ HI I
Sbjct: 460 NRLLPTYTQDERFSDYQLKIGDGKTQPPDLLTEADLIALMDKFGIGTDATHAEHIEKIKS 519
Query: 518 RNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
R Y+ V +L+P+ LG+ LV GY + + +P +R+ +Q
Sbjct: 520 REYIGVKPDGKLIPSFLGLALVDGYDDMGFAMSKPDLRANLEIQ 563
>gi|195164694|ref|XP_002023181.1| GL21219 [Drosophila persimilis]
gi|194105266|gb|EDW27309.1| GL21219 [Drosophila persimilis]
Length = 1178
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 196/531 (36%), Positives = 282/531 (53%), Gaps = 16/531 (3%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++++ P+ G MTSV GH+M L+F Y NW VDP LF P K L +
Sbjct: 37 IYDFEAPVRGQNAKMVMTSVSGHLMQLEFQVSYRNWRVVDPGSLFDAPVRKSVGESYLPI 96
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L E + C+ L++W DCD+EGENI +E++ R I T++RA FS IT +
Sbjct: 97 KKTLEREVRGCQGLIIWTDCDREGENIGYEIISVCRA---IKPNLTIYRASFSEITTIAV 153
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYGP 212
+ A+ L +P+ ++ +VD R ELDLR G A TR+QT + F K D LISYG
Sbjct: 154 RRALQQLGQPDKRQSDAVDVRTELDLRTGAAITRFQTMRLQRLFPEKIAD---KLISYGS 210
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAV 272
CQ PTLGF ER+ +I F EP+W + + + + V W+R +FDK C +
Sbjct: 211 CQIPTLGFVAERYKEIEAFVSEPFWKIRVLHTIEDLTVEFNWARNRLFDKEACENYLLLC 270
Query: 273 --EKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVS 330
E E TV V K K +P L+TVE+ ++ S L + M IAE+LY++G++S
Sbjct: 271 LSEPEPRATVESVTVKPKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTIAEKLYSKGFIS 330
Query: 331 YPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTK 389
YPRTET Q+ + F+L +++ Q DWG + VL G PR G K HPPI PTK
Sbjct: 331 YPRTETNQFSKEFELAPLVQLQAGHSDWGAFAQRVLDWG-PNPRNGSKSDQAHPPIHPTK 389
Query: 390 LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTG 449
A L G+ R+Y+ +VRHF+ + D V ++ V +A E FT + +
Sbjct: 390 SAD--NLQGNEARVYELVVRHFLACVSKDAVGSETVVNIDIAGEKFTANGLVIHERNYLD 447
Query: 450 VMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
V + + I ++ V + E TT P LTE++LI+LMEKHGIGTDA+
Sbjct: 448 VYVYDKWSAKRIHHYERDQRFEPTEVSLHEGATTAPPLLTEADLIALMEKHGIGTDATHA 507
Query: 510 VHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRV 560
HIN I +R Y+ V LVP +G+ L GY ++ L +P +R+ +
Sbjct: 508 EHINTIKERGYIGVLDKGALVPGVIGMGLYEGYDAMELALAKPQLRAEFEA 558
>gi|332261728|ref|XP_003279919.1| PREDICTED: DNA topoisomerase 3-alpha isoform 2 [Nomascus
leucogenys]
Length = 906
Score = 351 bits (901), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 193/484 (39%), Positives = 274/484 (56%), Gaps = 7/484 (1%)
Query: 75 VDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQ 134
+PL LF EK + + L E + C+ LV+W DCD+EGENI FE++ +
Sbjct: 13 CNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGENIGFEIIHVCK-- 70
Query: 135 ININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTK 194
+ V RARFS IT ++ A NL +P+ + +VD RQELDLRIG AFTR+QT
Sbjct: 71 -AVKPNLQVLRARFSEITPHAVRTACENLTEPDRRVSDAVDVRQELDLRIGAAFTRFQTL 129
Query: 195 FFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVT 253
Q + + L LISYG CQ PTLGF VER I+ F PE + + +T + V
Sbjct: 130 RLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFN 189
Query: 254 WSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGP 313
W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+TVEL ++AS L +
Sbjct: 190 WKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINA 249
Query: 314 HHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKP 373
M+IAE+LYTQGY+SYPRTET +P + +L ++ QQ P WG + +L G P
Sbjct: 250 KETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTP 309
Query: 374 RKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVAD 432
R G K HPPI PTK L GD RLY++IVRHF+ D + + +
Sbjct: 310 RNGNKSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQDAQGQETTVEIDITQ 367
Query: 433 EMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESE 492
E F +L + V + ++ +P ++ G +V+MV+ +T+PP LTE++
Sbjct: 368 ERFVAHGLVILARNYLDVYPYDHWSDKILPIYERGSCFQPSTVEMVDGETSPPKLLTEAD 427
Query: 493 LISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEP 552
LI+LMEKHGIGTDA+ HI I R YV +T +R +P LG+ LV GY + E+ +P
Sbjct: 428 LIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMGLVEGYDSMGYEMSKP 487
Query: 553 TMRS 556
+R+
Sbjct: 488 DLRA 491
>gi|195484485|ref|XP_002090715.1| GE13263 [Drosophila yakuba]
gi|194176816|gb|EDW90427.1| GE13263 [Drosophila yakuba]
Length = 1229
Score = 350 bits (899), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 195/529 (36%), Positives = 283/529 (53%), Gaps = 16/529 (3%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
V ++ P+ G MTSV GH+M L F Y NW VDP LF P +KR ++ +
Sbjct: 37 VFDFEAPVRGQNAKMVMTSVSGHLMQLAFQVSYKNWKTVDPRSLFDAPVKKRVSSDYEPI 96
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L E + C+ L++W DCD+EGENI +E+++ R I +V+RA FS IT +
Sbjct: 97 KRTLEREVRGCQGLIVWTDCDREGENIGYEIIDVCRA---IKPNISVYRATFSEITSVAV 153
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYGP 212
+ A+ L +P+ ++ +VD R ELDLR G A TR+QT + F K D LISYG
Sbjct: 154 RRALQQLGQPDKRQSDAVDVRTELDLRTGAAITRFQTMRLQRLFPEKIAD---KLISYGS 210
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCN--VFFK 270
CQ PTLGF ER+ +I F EP+W + + ++ + V W R +FDK C +
Sbjct: 211 CQIPTLGFVAERYKEIEAFVSEPFWKIKVLHTIDDLTVEFNWGRNRLFDKEACENYLLLC 270
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVS 330
E E V V K K +P L+TVE+ ++ S L + M +AE+LY++G++S
Sbjct: 271 LAEPEPRALVESVTVKPKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTVAEKLYSKGFIS 330
Query: 331 YPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTK 389
YPRTET Q+ + F L ++ Q DWG + V+ G PR G K HPPI PTK
Sbjct: 331 YPRTETNQFSKEFALAPLVEMQTGHRDWGAFAQRVIEWG-PNPRNGNKSDQAHPPIHPTK 389
Query: 390 LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTG 449
LA L G+ R+Y+ +VRHF+ + D V ++ + +A E FT + +
Sbjct: 390 LAE--NLQGNEARVYELVVRHFLACVSKDAVGSETLVHIDIAGEKFTANGLVIHERNYLD 447
Query: 450 VMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
V + + I ++ G V + E TT P LTE++LI+LMEKHGIGTDA+
Sbjct: 448 VYVYEKWSAKQIHHYENGQRFEPTEVSLHEGATTAPPLLTEADLIALMEKHGIGTDATHA 507
Query: 510 VHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAY 558
HIN I +R Y+ V LVP +G+ L GY ++ L +P +R+ +
Sbjct: 508 EHINTIKERGYIGVLDKGFLVPGVIGMGLYEGYDAMELTLAKPKLRAEF 556
>gi|395517927|ref|XP_003763121.1| PREDICTED: DNA topoisomerase 3-alpha, partial [Sarcophilus
harrisii]
Length = 888
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 190/484 (39%), Positives = 276/484 (57%), Gaps = 7/484 (1%)
Query: 75 VDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQ 134
+PL LF EK + + L E K C+ L++W DCD+EGENI FE++ +
Sbjct: 3 CNPLVLFEAQIEKYCPENFVDIKKTLEKEVKQCQSLLIWTDCDREGENIGFEIIHVCK-- 60
Query: 135 ININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTK 194
+ V+RARFS IT +K A +L +P+ + +V+ RQELDLRIG AFTR+QT
Sbjct: 61 -AVKPNLRVFRARFSEITANAVKTACQHLTEPDQRVSDAVEVRQELDLRIGAAFTRFQTL 119
Query: 195 FFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVT 253
Q + + L LISYG CQ PTLGF VER I+ F PE + + +T V +
Sbjct: 120 RLQKIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPETFHKIKVTHEHEDGVVDFS 179
Query: 254 WSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGP 313
W R +F+ + C V ++ ++ TVV+V S KSK +PQ L+TVEL ++AS L +
Sbjct: 180 WKRHRLFNHTACLVLYQMCMEDPVATVVEVASKPKSKWRPQPLDTVELEKLASRKLKINA 239
Query: 314 HHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKP 373
M+IAE+LYTQGY+SYPRTET +P++ +L +++QQ WG + +L G P
Sbjct: 240 KETMKIAEKLYTQGYISYPRTETNIFPKDLNLTTLVQQQTHDQQWGAFAQRILDRGGPTP 299
Query: 374 RKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVAD 432
R GK HPPI PTK L G+ RLY++IVRHF+ D + + + +A
Sbjct: 300 RNGKKSDQAHPPIHPTKYT--CNLQGNEKRLYEFIVRHFLACCSEDALGQETTVEIDIAQ 357
Query: 433 EMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESE 492
E F +L + V + ++ IP ++ +++MV+ +T+PP LTE++
Sbjct: 358 ERFVAHGLMILARNYLDVYIYDKWSDKVIPIYEKDSCFQPTTIEMVDGETSPPQLLTEAD 417
Query: 493 LISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEP 552
LI+LMEKHGIGTDA+ HI I R YV +TS +R +P LG+ LV GY + E+ +P
Sbjct: 418 LIALMEKHGIGTDATHAEHIETIKSRMYVGLTSDKRFLPGHLGMGLVEGYDSMGYEMSKP 477
Query: 553 TMRS 556
+R+
Sbjct: 478 DLRA 481
>gi|7960302|gb|AAF71288.1|AF255733_1 DNA topoisomerase III alpha [Drosophila melanogaster]
Length = 1250
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 196/531 (36%), Positives = 283/531 (53%), Gaps = 16/531 (3%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
V ++ P+ G MTSV GH+M L F Y NW VDP LF P EK + +
Sbjct: 62 VFDFEAPVRGQNAKMVMTSVSGHMMQLAFQVSYKNWRTVDPRSLFDAPVEKGVGSDYEPI 121
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L E + C+ L++W DCD+EGENI +E+++ R I +V+RA FS IT +
Sbjct: 122 KRTLEREVRGCQGLIIWTDCDREGENIGYEIIDVCRA---IKPNISVYRATFSEITTVAV 178
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYGP 212
+ A+ L +P+ ++ +VD R ELDLR G A TR+QT + F K D LISYG
Sbjct: 179 RRALQQLGQPDKRQSDAVDVRTELDLRTGAAITRFQTMRLQRLFPEKIAD---KLISYGS 235
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCN--VFFK 270
CQ PTLGF ER+ +I F EP+W + + ++ + V W+R +FDK C +
Sbjct: 236 CQIPTLGFVAERYKEIEAFVSEPFWKIKVLHTIDDLTVEFNWARNRLFDKEACENYLLLC 295
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVS 330
E + V V K K +P L+TVE+ ++ S L + M IAE+LYT+G++S
Sbjct: 296 LAEPDPRALVESVTVKPKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTIAEKLYTKGFIS 355
Query: 331 YPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTK 389
YPRTET Q+ + F L ++ Q DWG + V+ G PR G K HPPI PTK
Sbjct: 356 YPRTETNQFSKEFALAPLVEMQTGHRDWGAFAQRVIEWG-PNPRNGNKSDQAHPPIHPTK 414
Query: 390 LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTG 449
LA L G+ R+Y+ +VRHF+ + D V ++ + +A E FT + +
Sbjct: 415 LAE--NLQGNEARVYELVVRHFLACVSKDAVGSETLVHIDIAGEKFTANGLVIHERNYLD 472
Query: 450 VMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
V + + I ++ G V + E TT P LTE++LI+LMEKHGIGTDA+
Sbjct: 473 VYVYDKWSAKQIHHYENGQRFEPTEVSLHEGATTAPPLLTEADLIALMEKHGIGTDATHA 532
Query: 510 VHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRV 560
HIN I +R Y+ V LVP +G+ L GY ++ L +P +R+ + +
Sbjct: 533 EHINTIKERGYIGVLDKGFLVPGVIGMGLYEGYDAMELALAKPQLRAEFEL 583
>gi|281201507|gb|EFA75716.1| DNA topoisomerase III [Polysphondylium pallidum PN500]
Length = 1103
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 182/510 (35%), Positives = 282/510 (55%), Gaps = 12/510 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR-EATPKLKLPAFLANEAKDCEFLV 111
TSV GH+M D Y NW DP++LF P K + L L E + C+ L+
Sbjct: 382 FTSVLGHLMTTDVVPPYTNWTSCDPIDLFEAPIHKFIDGENSTNLDKTLKREGRRCDTLI 441
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
LWLDCD+EGENI FEV+E+VR +N ++RA FS+I +IK A+ NL +PN ++
Sbjct: 442 LWLDCDREGENIAFEVIESVRA---VNRNIRIYRAHFSSIIPAEIKRAISNLAQPNKNDS 498
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+VD R E+DLR+G AFTR+Q+++ + K+ D ISYGPCQ PTLGF VER +I F
Sbjct: 499 MAVDCRIEIDLRLGAAFTRFQSRYLRSKFEINDDQPISYGPCQFPTLGFVVERALRIERF 558
Query: 232 KPEPYWLLDLTLNLNGVAVSVT----WSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
PE +W++D++ T W R +F+ + +F++ TVVDV +
Sbjct: 559 VPEDFWVIDVSHQKKADGEMRTADFGWKRKRLFELAPAFIFYEQCLDNPLATVVDV-NVK 617
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
+++ +P L T+EL ++AS L + M++AE LY +G++SYPRTET + D +
Sbjct: 618 ENRYRPVPLTTIELQKLASKKLRISSDETMKLAEELYNKGFISYPRTETDSFLPETDFMG 677
Query: 348 VLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDY 406
++R Q + WG + + +L+ G +P++GK + HPPI PT A L G LY++
Sbjct: 678 LIRLQTDNQKWGGYAQSLLNGGFVRPKEGKHNDNSHPPIHPTGAA--NALSGKQANLYEF 735
Query: 407 IVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKP 466
I R F+ + +Y Q +ADE F+ ++ G+ V + ++ +P +
Sbjct: 736 ICRRFLACCSKESIYGQTTVTIDIADETFSATGSMMIQQGYLEVYPYDKRYDKILPTYVV 795
Query: 467 GDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSG 526
G+ +++ + +T P L+E EL+S M+ + IGTDA++ HI I RNYV
Sbjct: 796 GETFTPSRLELNKSRTVAPKPLSEPELLSEMDNNKIGTDATMAQHIKKIIDRNYVIKNEE 855
Query: 527 RRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
R +PT LG L+ GY + +P +R+
Sbjct: 856 NRFIPTDLGKALIIGYDSMGFGFSKPALRA 885
>gi|312072253|ref|XP_003138981.1| DNA topoisomerase III [Loa loa]
gi|307765852|gb|EFO25086.1| DNA topoisomerase III [Loa loa]
Length = 800
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 186/512 (36%), Positives = 280/512 (54%), Gaps = 7/512 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH++ F + + NW + LF +K + A L E + + LV+
Sbjct: 80 MTSVSGHLLQHSFPASFKNWTETPIKMLFDVNIQKSTIPGMEDVKATLVEEIRKSDLLVI 139
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I EV+ +N V+RARFS IT+ + A+ NLV+ +
Sbjct: 140 WTDCDREGEAIGAEVVSVC---TEVNRNLDVYRARFSEITNTAVNRALNNLVRLDQRLVD 196
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDL--DASLISYGPCQTPTLGFCVERHDKIRT 230
+V+ R ELDLRIG AFTR QT + + ++ D +++SYG CQ PTLGF VER+ I+
Sbjct: 197 AVECRSELDLRIGAAFTRLQTLHLRNNFANIFRDKNIVSYGSCQFPTLGFIVERYQAIKE 256
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
F E +W + + + V W R +FD+ V E+ + V+ V KSK
Sbjct: 257 FISETFWKISMKHTREDIMVEFVWDRQRLFDRDVVQVLLDDCEEAREARVLSVIRKPKSK 316
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
+P AL+TVEL ++A L M +AERLY +GY+SYPRTET ++P++ DL ++
Sbjct: 317 WRPVALDTVELEKLAVRKLKFSAKETMVVAERLYNKGYISYPRTETNKFPKDIDLNIYVQ 376
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVR 409
QQ S +WG+ +EV ++G S PR G + HPPI P K AT +L G W LY++IVR
Sbjct: 377 QQTVSGEWGEFAQEVAAHGPS-PRNGSKTDEAHPPIHPLKFATTNELIGLEWSLYEFIVR 435
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDL 469
HF+ L D + + + +E FT + G+ V + ++ +P ++ ++
Sbjct: 436 HFLACLSVDAKGQETKVQVRLGNENFTASGLIVEDYGYLNVYKYDKWGDKILPSYRENEI 495
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRL 529
I +++ E +T PP L E++LI+LM+K+GIGTDA+ HI I R Y + S R
Sbjct: 496 ITDYQLQITEGQTQPPQLLNEADLIALMDKYGIGTDATHAEHIETIKTRQYAALNSDGRF 555
Query: 530 VPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
VP +G+ LV GY ++ + +P MR+ Q
Sbjct: 556 VPGYIGLALVDGYDRMGYAMSKPHMRADLESQ 587
>gi|195397674|ref|XP_002057453.1| GJ18138 [Drosophila virilis]
gi|194141107|gb|EDW57526.1| GJ18138 [Drosophila virilis]
Length = 1355
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 193/531 (36%), Positives = 282/531 (53%), Gaps = 16/531 (3%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
V+++ + G MTSV GH+M L+F Y NW VDP LF P K +
Sbjct: 37 VYDFEAQVRGRNAKMVMTSVSGHLMQLEFLVSYRNWRNVDPRSLFDAPIRKSVGENYEPI 96
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L E + C+ L++W DCD+EGENI +E+++ R I TV+RA FS IT +
Sbjct: 97 KRTLEREVRGCQGLIIWTDCDREGENIGYEIIDVCRA---IKPNLTVYRASFSEITTTAV 153
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYGP 212
+ A+ L +P+ ++ +VD R ELDLR G A TR+QT + F K D LISYG
Sbjct: 154 RRALLQLGQPDKRQSDAVDVRSELDLRTGAAITRFQTLRLQRLFPEKIAD---KLISYGS 210
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCN--VFFK 270
CQ PTLGF ER+ +I F EP+W + + + + V W+R +FDK C +
Sbjct: 211 CQIPTLGFVAERYKEIEAFVSEPFWKIRVLHTIEDLTVEFNWARNRLFDKEACENYLLLC 270
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVS 330
E E TV V K K +P L+TVE+ ++ S L + M IAE+LY++G++S
Sbjct: 271 LAEPEPRATVESVTVKPKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTIAEKLYSKGFIS 330
Query: 331 YPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTK 389
YPRTET Q+ + F+L ++ Q WG + VL G PR G K HPPI PTK
Sbjct: 331 YPRTETNQFSKEFELAPLVEQHTGHEAWGAFAQRVLEWG-PNPRNGNKSDQAHPPIHPTK 389
Query: 390 LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTG 449
+ T L G+ R+Y+ +VRHF+ + D V ++ + +A E F+ + +
Sbjct: 390 MVT--NLQGNEARVYELVVRHFLACVSKDAVGSETIVSIDIAGEKFSANGLVIHERNYLD 447
Query: 450 VMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
V + + I +++ G + + E TT P LTE++LI+LMEKHGIGTDA+
Sbjct: 448 VYVYDKWSAKQIHNYEQGQRFEPTEIVLHEGATTAPPLLTEADLIALMEKHGIGTDATHA 507
Query: 510 VHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRV 560
HIN I +R Y+ V LVP +G+ L GY ++ L +P +R+ +
Sbjct: 508 EHINTIKERGYIGVVDKGALVPGVIGMGLYEGYDAMELALAKPLLRAEFEA 558
>gi|449437640|ref|XP_004136599.1| PREDICTED: DNA topoisomerase 3-alpha-like [Cucumis sativus]
Length = 925
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 196/519 (37%), Positives = 290/519 (55%), Gaps = 22/519 (4%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+M L F +Y W DP++LF P K KL + L E++ ++LVL
Sbjct: 60 VTSVTGHLMELAFEERYRKWHSCDPVQLFHAPVHKFVPEDKLDIKRTLEQESRRAQWLVL 119
Query: 113 WLDCDKEGENICFEVME---AVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
WLDCD+EGENI FEV+E AV H +NI RA FSA+ ++DI A+ NLV+PN +
Sbjct: 120 WLDCDREGENIAFEVVEVCTAVNHHLNIK------RAHFSALIERDIHDAVQNLVQPNKW 173
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYG-----DLDASLISYGPCQTPTLGFCVER 224
A +VDARQE+DLRIG +FTR+QT + + D ++SYGPCQ PTLGF VER
Sbjct: 174 FADAVDARQEIDLRIGASFTRFQTLLLKDAFNIDSVTDDRNIVLSYGPCQFPTLGFVVER 233
Query: 225 HDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQ 284
+ +I++ +PE +W ++ + N + + +W+RG++FD + VF++ +E TVV+V+
Sbjct: 234 YWEIQSHEPEEFWTINCSHNSDDGISTFSWTRGNLFDYTCAVVFYEMCVQESTATVVNVR 293
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD 344
K P LNT+EL + AS M H M++AE LY G++SYPRTET + + D
Sbjct: 294 RQETLKYPPHPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDCFSQRTD 353
Query: 345 LVAVLRQQESSPDWGDHVREVLSNGISKPRK----GKDVGDHPPITPTKL-ATRTQLDGD 399
L ++R+Q+ WG + + +L R G D HPPI PTK A D
Sbjct: 354 LHGIVREQQEHQIWGAYAQRLLDPESRLWRNPSGGGHDDKAHPPIHPTKFSAGERGWSQD 413
Query: 400 AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTM--EAKYLLHPGFTGVMTWSAMK 457
RLY+ +VRHF+ + V + +A E+F+ A +L + V + +
Sbjct: 414 HHRLYELVVRHFLACVSQPAVGAVTTVEIDIAGELFSTSKRANSILR-NYLDVYRFESWG 472
Query: 458 NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQ 517
+IP + G ++ + T PP L+E++L+S M+K GIGTDA++ HI +
Sbjct: 473 GSTIPTYVSGQQFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLD 532
Query: 518 RNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
R Y T + R PT+LG LV GY + L +P +R+
Sbjct: 533 RFYATKDANTRFTPTNLGEALVMGYDDMGYNLWKPNLRA 571
>gi|449546712|gb|EMD37681.1| hypothetical protein CERSUDRAFT_50044 [Ceriporiopsis subvermispora
B]
Length = 1000
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 202/517 (39%), Positives = 280/517 (54%), Gaps = 17/517 (3%)
Query: 50 LFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEF 109
F +TSV GH+ DF +++ W +P LF K LANEAK +
Sbjct: 98 FFTVTSVSGHLFDYDFEPQFSKWMSCNPFSLFDAQIVKSVKKDGKTTAQNLANEAKRAQK 157
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
L++W DCD+EGENI EV + R N V RARFSAI + I A + V+ ++
Sbjct: 158 LMIWTDCDREGENIGAEVADVCR---KANRNIIVQRARFSAIIAQQIHHAAQHPVELDMA 214
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
++ +V AR ELDLRIG AFTR QT Q ++ L +ISYGPCQ PTLGF V R+++++
Sbjct: 215 QSNAVQARIELDLRIGAAFTRLQTLNLQERFDALK-EVISYGPCQFPTLGFVVSRYNQVK 273
Query: 230 TFKPEPYWL--LDLTLNLNGVA---VSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQ 284
F PEP+W L LT L+G ++ TW RGH+FD ++ V VV V
Sbjct: 274 AFVPEPFWYIYLSLTKELSGGEPNEITFTWKRGHLFDLQVAAELYEMVLGAPAARVVRVT 333
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD 344
+ K KP L TV+L + S L + P + IAERLY QG++SYPRTET Q+ FD
Sbjct: 334 AKDTKKWKPLPLTTVDLQKAGSRLLKISPKKVLDIAERLYQQGFLSYPRTETDQFDPKFD 393
Query: 345 LVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRL 403
++ +Q + P WG + G S PRKG KD HPPI PT A L GD R+
Sbjct: 394 FATLIGKQAADPAWGGFATALQGGGFSPPRKGKKDDKAHPPIHPTAHA--ANLAGDEKRV 451
Query: 404 YDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPD 463
Y+YI R F+ D + + + E FT + + V + ++ +P+
Sbjct: 452 YEYITRRFLACCSKDALGWETTVEVDYGGEEFTATGLTVRERNYLNVFHYDKWADKELPN 511
Query: 464 FKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT- 522
F+ G+ ++ E KT+ P+ LTE++L++LM+K+GIGTDA+I HI I R YV
Sbjct: 512 FEQGEEFVPTVCELREGKTSKPNLLTEADLVTLMDKNGIGTDATIAQHIQTIVDRQYVIE 571
Query: 523 --VTSGRRLVPTSLGIVLVHGYQKI--DRELVEPTMR 555
S + LVP++LGI LV GY I DR L +P +R
Sbjct: 572 RMQGSTKYLVPSTLGIGLVEGYDAIGFDRSLSKPQLR 608
>gi|145511830|ref|XP_001441837.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124409098|emb|CAK74440.1| unnamed protein product [Paramecium tetraurelia]
Length = 947
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 198/522 (37%), Positives = 292/522 (55%), Gaps = 27/522 (5%)
Query: 45 FGDL-VLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-------CPTEKREATPKLKL 96
FGD V +TSV GH+ L + +Y WD+ DP+ + P EKR L
Sbjct: 55 FGDQEVEMWITSVTGHLKSLRYPKQYQKWDQWDPIIILKDAEIENIIPNEKR------FL 108
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L A++C L+LWLDCD+EGENI FEV+E + + N V RA FSA+T DI
Sbjct: 109 EGNLKQFARECSQLILWLDCDREGENIAFEVLEVCK---DSNPQIQVHRAHFSAVTYIDI 165
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTP 216
K A+ NL +P+ + SV ARQE+DLRIG +FTR+QT + S+ISYGPCQ P
Sbjct: 166 KKALDNLKQPDENLSNSVLARQEIDLRIGASFTRFQTL--LLQQQFHLQSVISYGPCQIP 223
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEK 276
TLGF V+R +I +F E +W + + WSRG+IFD+ + F+ E+
Sbjct: 224 TLGFVVQRQKEIDSFVKEKFWFIQCE---DQTKCGYNWSRGNIFDEMIVLILFERCFTEQ 280
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTET 336
+ DVQS K KP L+T+E ++AS L + H AM++AE+LY +G++SYPRTET
Sbjct: 281 -AKITDVQSKEVQKWKPYPLSTIEFEKLASKKLKISAHKAMELAEKLYNRGFISYPRTET 339
Query: 337 TQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQ 395
++P +L ++R Q + P WG+ + +++ +PR G KD HPPI P K+ +
Sbjct: 340 NKFPPTINLQNIIRDQVNHPVWGEFAQSLINCNFDQPRAGNKDDKAHPPIHPVKMMRESD 399
Query: 396 LD-GDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
W +Y I RHF+ + ++ V +E F + +L + + +
Sbjct: 400 AQTQQEWEIYQLITRHFLACCSKNAKGSETTVNLQVQEESFYKQGLVILEKNYLEIYPYD 459
Query: 455 AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINN 514
+P++K GD+I I ++K+ KT+PP +TESELI LM+K+GIGTDA+I HIN
Sbjct: 460 EWSQSQVPNYKKGDMIQI-TLKIQNGKTSPPKPMTESELIGLMDKNGIGTDATIHEHINT 518
Query: 515 ICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
I +R Y + G+ + PT LG+ LV Y+ + L +P +R+
Sbjct: 519 IQEREYA-IKKGQIIKPTKLGLALVESYEMLGFTLHKPHLRA 559
>gi|397627399|gb|EJK68461.1| hypothetical protein THAOC_10357, partial [Thalassiosira oceanica]
Length = 1051
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 223/578 (38%), Positives = 303/578 (52%), Gaps = 76/578 (13%)
Query: 50 LFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE--ATPKLKLPAFLANEAKDC 107
L ++TSV GHI L F + + K DP E F+ P K+E + KL++ L A D
Sbjct: 350 LVRVTSVVGHIYSLGFDQQGQD-KKSDPREYFTMPVTKQEEGTSSKLRVVDHLKALAGDS 408
Query: 108 EFLVLWLDCDKEGENICFEVMEAVRHQININSPKT------VWRARFSAITDKDIKAAMW 161
L LWLDCD EGENI FEV+ R I N+P + + RA+FSAIT K I+ A
Sbjct: 409 NHLCLWLDCDAEGENIAFEVLAVTRRAILTNNPSSDDGVRRIHRAKFSAITPKAIQDAFV 468
Query: 162 NLVKPNIFEARSVDARQELDLRIGCAFTRYQT--KFFQGKYGDLDASLISYGPCQTPTLG 219
+ +P+ +RSVDARQELDLRIG A TR T + + +ISYGPCQTP L
Sbjct: 469 TMEEPDAALSRSVDARQELDLRIGVAMTRLLTWRCIHLARRANPATRMISYGPCQTPALS 528
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNL-NGVAVSVTW------------SRGHIFDKSTCN 266
FC++R +I F P+ YW L + + +G S+ W +R
Sbjct: 529 FCIDRMREIEGFTPQVYWKLSCSAKMVDGSTQSLKWLGLVDEADTVLDTRNKNSQGEDSA 588
Query: 267 VFFKAVEKE-----KH--VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQI 319
F + +E KH + V V S +S + P LNTV L+ V S +GM P M++
Sbjct: 589 TFNEKAAREVINLAKHSNLVVTKVTRSDESISPPLGLNTVALLEVGSKAMGMSPKGLMKV 648
Query: 320 AERLYTQGYVSYPRTETTQY-PENFDLVAVLRQQESSPDWGDH----VREVLSNGISKPR 374
AE LY+ G++SYPRTETT+Y P FD ++LRQ S PDWG VR SN P
Sbjct: 649 AETLYSSGFISYPRTETTRYDPIGFDAKSLLRQHSSHPDWGKSASYLVRTRKSN--RPPS 706
Query: 375 KGKDVGDHPPITPTKLATRTQLDGD-AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADE 433
+G D GDHPPITP K ATR Q+ G AWR+Y+++ R+FIG+L DL +T+ K S+A E
Sbjct: 707 RGFDAGDHPPITPLKSATRNQIGGGAAWRVYEFVTRNFIGSLHNDLKFTR--TKISLAFE 764
Query: 434 M-----FTMEAKYLLHPGFTGVMTW-----SAMKNESIPDFKPGDLIPIQSVKMVERKTT 483
F E + GF W A ++ D + GD++PI S+ + ++ T
Sbjct: 765 GSRAPDFEFELVSVDSLGFADACRWVLKDIQAGNKDAGRDIQVGDVLPIASISIDQKNTR 824
Query: 484 PPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS------------------ 525
PP +L E ELI M+ IGTDAS+ +H++NI R YV +T
Sbjct: 825 PPKFLQEHELIRQMDDKRIGTDASMALHVSNIVDRGYVMLTDETGTPLRPPRPPGKRKQN 884
Query: 526 -----GRRLVPTSLGIVLVH--GYQKIDRELVEPTMRS 556
GR +VPT LG L+ G+Q+ RE+ P + S
Sbjct: 885 QPRQIGRFMVPTPLGSSLLELFGHQEEAREVESPALLS 922
>gi|402225468|gb|EJU05529.1| prokaryotic type I DNA topoisomerase [Dacryopinax sp. DJM-731 SS1]
Length = 866
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 196/513 (38%), Positives = 289/513 (56%), Gaps = 19/513 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCP---TEKREATPKLKLPAFLANEAKDCEF 109
+TSV GH+M DF+ Y W+ DP +LF P +++ P + L EA+
Sbjct: 51 VTSVAGHLMESDFSDDYRRWESCDPADLFDAPIITAVRKDGGP---IARNLEIEARGKNM 107
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
L++W DCD+EGE+I EV R N+ V RARF+AI + I A + V+ +
Sbjct: 108 LMIWTDCDREGEHIGSEVASVCR---KTNARIEVKRARFNAIIPQQIHHAARHPVELDRR 164
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
++ +V+AR +LDLR+G AFTR QTK Q + DL +ISYGPCQ PTLGF V R+ +++
Sbjct: 165 QSDAVEARIQLDLRLGAAFTRMQTKMLQNQVPDLQRKMISYGPCQFPTLGFVVSRYQQVQ 224
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKS 289
F PE +W + L++ ++G TW RGH+FD ++ + T+ V
Sbjct: 225 AFVPETFWYIYLSIMVDGEETDFTWRRGHLFDFPATLALYELCVESPEATIAQVTKKPTK 284
Query: 290 KTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL 349
K +P L TVEL + AS L + P + IA+ LY++G++SYPRTET Q+ +FD + ++
Sbjct: 285 KWRPLPLTTVELQKSASRLLRLTPKRILDIADDLYSKGFLSYPRTETDQFDPDFDFMTLI 344
Query: 350 RQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIV 408
++Q + P WG + + + G + PRKG K+ HPPI PT A T L GD R+Y+Y+
Sbjct: 345 QKQTTDPAWGQFAQSLANGGFNAPRKGKKNDKAHPPIHPT--AHVTNLVGDDKRVYEYVT 402
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGD 468
R F+ + D Q VA E F + + V T+ ++ +PDF+ G
Sbjct: 403 RRFLASCSKDAEGQQTTVTVIVAGEEFNATGLTITQRNYLEVFTYDKWSDKQLPDFEQGQ 462
Query: 469 -LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV---T 524
IP+ +M E +T+ P LTE++L+ LM+++GIGTDA+I HI I R YV
Sbjct: 463 HFIPV-VCEMREGQTSRPSLLTEADLVGLMDENGIGTDATIAQHIQTIIDREYVMTRQED 521
Query: 525 SGRRLVPTSLGIVLVHGYQKI--DRELVEPTMR 555
S + LVP++LGI LV GY KI DR L +P +R
Sbjct: 522 SMKYLVPSTLGIGLVEGYNKIGFDRSLSKPQLR 554
>gi|24585251|ref|NP_523602.2| topoisomerase 3alpha [Drosophila melanogaster]
gi|33860232|sp|Q9NG98.2|TOP3A_DROME RecName: Full=DNA topoisomerase 3-alpha; AltName: Full=DNA
topoisomerase III alpha
gi|22946848|gb|AAF53813.2| topoisomerase 3alpha [Drosophila melanogaster]
gi|51092196|gb|AAT94511.1| LD04601p [Drosophila melanogaster]
gi|220950368|gb|ACL87727.1| Top3alpha-PA [synthetic construct]
Length = 1250
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 195/531 (36%), Positives = 283/531 (53%), Gaps = 16/531 (3%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
V ++ P+ G MTSV GH+M L F Y NW VDP LF P +K + +
Sbjct: 62 VFDFEAPVRGQNAKMVMTSVSGHMMQLAFQVSYKNWRTVDPRSLFDAPVKKGVGSDYEPI 121
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L E + C+ L++W DCD+EGENI +E+++ R I +V+RA FS IT +
Sbjct: 122 KRTLEREVRGCQGLIIWTDCDREGENIGYEIIDVCRA---IKPNISVYRATFSEITTVAV 178
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYGP 212
+ A+ L +P+ ++ +VD R ELDLR G A TR+QT + F K D LISYG
Sbjct: 179 RRALQQLGQPDKRQSDAVDVRTELDLRTGAAITRFQTMRLQRLFPEKIAD---KLISYGS 235
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCN--VFFK 270
CQ PTLGF ER+ +I F EP+W + + ++ + V W+R +FDK C +
Sbjct: 236 CQIPTLGFVAERYKEIEAFVSEPFWKIKVLHTIDDLTVEFNWARNRLFDKEACENYLLLC 295
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVS 330
E + V V K K +P L+TVE+ ++ S L + M IAE+LYT+G++S
Sbjct: 296 LAEPDPRALVESVTVKPKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTIAEKLYTKGFIS 355
Query: 331 YPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTK 389
YPRTET Q+ + F L ++ Q DWG + V+ G PR G K HPPI PTK
Sbjct: 356 YPRTETNQFSKEFALAPLVEMQTGHRDWGAFAQRVIEWG-PNPRNGNKSDQAHPPIHPTK 414
Query: 390 LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTG 449
LA L G+ R+Y+ +VRHF+ + D V ++ + +A E FT + +
Sbjct: 415 LAE--NLQGNEARVYELVVRHFLACVSKDAVGSETLVHIDIAGEKFTANGLVIHERNYLD 472
Query: 450 VMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
V + + I ++ G V + E TT P LTE++LI+LMEKHGIGTDA+
Sbjct: 473 VYVYDKWSAKQIHHYENGQRFEPTEVSLHEGATTAPPLLTEADLIALMEKHGIGTDATHA 532
Query: 510 VHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRV 560
HIN I +R Y+ V LVP +G+ L GY ++ L +P +R+ + +
Sbjct: 533 EHINTIKERGYIGVLDKGFLVPGVIGMGLYEGYDAMELALAKPQLRAEFEL 583
>gi|389741773|gb|EIM82961.1| prokaryotic type I DNA topoisomerase [Stereum hirsutum FP-91666
SS1]
Length = 637
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 197/519 (37%), Positives = 287/519 (55%), Gaps = 19/519 (3%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
F +T V GH+M DF + W DP+ LF P E + A K + ++NEA+ + L
Sbjct: 49 FTVTCVAGHLMEYDFHDTHRKWQSCDPIALFDAPIESKTAKDKTAIAQNISNEARRADQL 108
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
++W DCD+EGENI +E+M + N V RARFSAI + I A + ++ ++ +
Sbjct: 109 MIWTDCDREGENIGWEIMVTAQ---KTNRNIIVKRARFSAIIAQQIHNAAQHPIELDLLQ 165
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL-DASLISYGPCQTPTLGFCVERHDKIR 229
A++V AR LDLRIG AFTR QT + + L +A +ISYGPCQ PTLGF V R+++++
Sbjct: 166 AQAVTARINLDLRIGAAFTRMQTMALRDRLEKLKEAGVISYGPCQFPTLGFVVSRYNQVQ 225
Query: 230 TFKPEPYWLLDLTLNLNGVA------VSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV 283
+F PE +W + L++ N + V TW RGH+F+ V ++ V V V
Sbjct: 226 SFVPEAFWYIYLSIEPNAGSSKINEEVQFTWRRGHLFEFEVALVIYEVVLASPRARVTKV 285
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
K KP L TVEL + S L + P + IAE+LY QG++SYPRTET QY F
Sbjct: 286 TKKNTKKWKPLPLTTVELQKAGSRLLKLAPKKILDIAEKLYQQGFLSYPRTETDQYDPQF 345
Query: 344 DLVAVLRQQESSPDWGDHVREVLS-NGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAW 401
D ++++ +Q P+WG + + +G + PRKGK+ HPPI PT A L GD
Sbjct: 346 DFMSLIEKQNVDPEWGQFAHMLQTQDGFNAPRKGKNNDHAHPPIHPT--AHAANLGGDDK 403
Query: 402 RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI 461
R+Y++IVR F+ D + Q E F +L F V + + +
Sbjct: 404 RVYEFIVRRFLACCSKDALGFQTTVDVLCGGEEFYATGLIILERNFLNVYPYEKWSGKEL 463
Query: 462 PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
PDF+ GD ++ E T+PP+ LTE++L+ LM+K+GIGTDA+I HI I +R YV
Sbjct: 464 PDFEEGDEFMPSVCELREGVTSPPNLLTEADLVGLMDKNGIGTDATIAQHIETIIERGYV 523
Query: 522 TVTSG---RRLVPTSLGIVLVHGYQKI--DRELVEPTMR 555
+ LVP++LGI LV GY +I ++ L +P +R
Sbjct: 524 IPRPDGGVKYLVPSTLGIGLVDGYNEIGFEKSLSKPQLR 562
>gi|145526124|ref|XP_001448873.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416439|emb|CAK81476.1| unnamed protein product [Paramecium tetraurelia]
Length = 859
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 189/508 (37%), Positives = 284/508 (55%), Gaps = 14/508 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELF-SCPTEKREATPKLKLPAFLANEAKDCEFLV 111
+TSV GH+ L + KY +W+K DP+ + E +T K L L N A C L+
Sbjct: 64 ITSVTGHLKSLKYPQKYQSWEKWDPIIILKEAEIENNISTDKQNLELNLKNFASICNRLI 123
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
LWLDCD+EGENI FEVME R N V RA FSA+T D++ A+ L P+ +
Sbjct: 124 LWLDCDREGENIAFEVMEVCRE---ANPNIQVNRAHFSAVTYVDVRRALDTLKYPDQNLS 180
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
SV ARQE+DLRIG +FTR+QT Q ++ +S++SYGPCQ PTLGF V+R +I +F
Sbjct: 181 NSVIARQEIDLRIGASFTRFQTLLLQKQFNL--SSIVSYGPCQIPTLGFVVQRQKEIDSF 238
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
E +W + + + W R H+FD+ + F+ +E TV++VQ K
Sbjct: 239 VKEQFWFIQSEDDQKCI---YNWDRTHLFDEFIVALLFERCYQES-ATVINVQQKDVQKW 294
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
KP L T+E ++AS L + H AM++AERLY +GY+SYPRTET ++P +L ++R
Sbjct: 295 KPYPLCTIEFEKLASKKLRISAHKAMELAERLYNKGYISYPRTETNKFPPTINLQTIIRD 354
Query: 352 QESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQL-DGDAWRLYDYIVR 409
Q++ P WG++ +L+ P+ G KD HPPI P K+ + + W +Y I R
Sbjct: 355 QQNHPVWGEYATNLLNFAFEYPKAGNKDDKAHPPIHPVKMMIENEAQNKQEWDVYQLITR 414
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDL 469
HF+ + ++ + DE F+ + + + + +P+++ GD
Sbjct: 415 HFLACCSKNAKGSETTITLQINDETFSKSGLVIKEKNYLEIYIYEEWSQSQVPNYQQGDS 474
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRL 529
I I+ + + + T+PP +TE+ELI LM+K+GIGTDA+I HIN I R Y T G+ +
Sbjct: 475 IKIK-LTLQKGSTSPPKPMTEAELIGLMDKNGIGTDATIHEHINTIQDREYAT-KRGQII 532
Query: 530 VPTSLGIVLVHGYQKIDRELVEPTMRSA 557
PT +G+ LV Y+ + L +P +R+
Sbjct: 533 KPTKIGLALVESYEILGFTLHQPFLRAV 560
>gi|15237561|ref|NP_201197.1| DNA topoisomerase III [Arabidopsis thaliana]
gi|8777305|dbj|BAA96895.1| DNA topoisomerase III [Arabidopsis thaliana]
gi|169218912|gb|ACA50279.1| topoisomerase 3 alpha [Arabidopsis thaliana]
gi|332010433|gb|AED97816.1| DNA topoisomerase III [Arabidopsis thaliana]
Length = 926
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 188/518 (36%), Positives = 286/518 (55%), Gaps = 20/518 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+M L+F +Y W DP +L+ P K K + L EA+ ++LVL
Sbjct: 61 MTSVIGHLMELEFADRYRKWHSCDPADLYQAPVMKHVPEDKKDIKKTLEEEARKSDWLVL 120
Query: 113 WLDCDKEGENICFEVME---AVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
WLDCD+EGENI FEV++ AV+H + I RA FSA+ D+DI A+ NL PN
Sbjct: 121 WLDCDREGENIAFEVVDVCRAVKHNLFIR------RAHFSALIDRDIHEAVQNLRDPNQL 174
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKY-----GDLDASLISYGPCQTPTLGFCVER 224
A +VDARQE+DLRIG +FTR+QT + ++ G+ + +ISYGPCQ PTLGF VER
Sbjct: 175 FAEAVDARQEIDLRIGASFTRFQTMLLRDRFAIDSTGEERSRVISYGPCQFPTLGFIVER 234
Query: 225 HDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV- 283
+ +I+ +PE +W ++ + + W RGH+FD ++ + ++ +E TV++V
Sbjct: 235 YWEIQAHEPEEFWTINCSHQSEEGLATFNWMRGHLFDYASAVILYEMCVEEPTATVMNVP 294
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
+ K P LNT+EL + AS + H M++AE LY G++SYPRTET +
Sbjct: 295 HPRERFKYPPYPLNTIELEKRASRYFRLSSEHTMKVAEELYQAGFISYPRTETDSFSSRT 354
Query: 344 DLVAVLRQQESSPDWGDHVREVLS--NGI--SKPRKGKDVGDHPPITPTKLAT-RTQLDG 398
DL A++ +Q P WG + + +L G+ + G D HPPI PTK ++ +
Sbjct: 355 DLRAMVEEQTRHPAWGSYAQRLLEPEGGLWRNPANGGHDDKAHPPIHPTKFSSGESNWSR 414
Query: 399 DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKN 458
D +Y+ +VRH++ + V + + +A E F+ + +L + V + +
Sbjct: 415 DHLNVYELVVRHYLACVSQPAVAAETTVEIDIAGERFSASGRAILAKNYLEVYRFESWGG 474
Query: 459 ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQR 518
IP ++ G ++ + T PP L E++L+S M+K GIGTDA++ HI + R
Sbjct: 475 SVIPVYEKGQQFIPTTLTLDAAVTRPPPLLCEADLLSCMDKAGIGTDATMHDHIKKLLDR 534
Query: 519 NYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
Y T + R PT+LG LV GY + EL +P +R+
Sbjct: 535 GYATKDANTRFSPTNLGEALVMGYDDMGYELWKPNLRA 572
>gi|301092946|ref|XP_002997323.1| DNA topoisomerase, putative [Phytophthora infestans T30-4]
gi|262110843|gb|EEY68895.1| DNA topoisomerase, putative [Phytophthora infestans T30-4]
Length = 907
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 198/525 (37%), Positives = 294/525 (56%), Gaps = 16/525 (3%)
Query: 46 GDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEK--REATPKLKLPAFLANE 103
G V +TSV GHIM LDF + +W DP++LF+ P K R + K+ L E
Sbjct: 48 GQQVQMVVTSVTGHIMELDFDASVRSWHSCDPVDLFTAPVTKKIRSDETQKKIEKTLMEE 107
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
AK ++LVLWLDCD+EGENI +EV NS V+RARFSA+ +DI A+ NL
Sbjct: 108 AKHSQWLVLWLDCDREGENIAYEVKSICE---KTNSRLRVFRARFSALIPRDIVHAVQNL 164
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL--DASLISYGPCQTPTLGFC 221
+PN + +VDAR E+DLRIG AFTR+QT Q ++ L + ++ISYGPCQ PTLGF
Sbjct: 165 SQPNEKLSLAVDARSEIDLRIGAAFTRFQTMRIQSRFPALNQEKNVISYGPCQFPTLGFV 224
Query: 222 VERHDKIRTFKPEPYWLLDLTLNL----NGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKH 277
VER KIR F+ E ++ + +T + + W RGH FD+ C ++++ + +
Sbjct: 225 VERFLKIRNFEREAFYYISVTHQQTDQPDAPTTTFKWKRGHFFDRMACLCIYESLVESQT 284
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
+ V K KP L TVEL + AS L + M+ AE LY +G +SYPRTET+
Sbjct: 285 AAIESVDKRPSWKRKPLPLTTVELQKRASRWLRISSEATMKAAESLYNKGLISYPRTETS 344
Query: 338 QYPENFDLVAVLRQQESSPDWGDHV-REVLSNG-ISKPRKGK-DVGDHPPITPTKLATRT 394
++ E DL++++R E+ WG++V R++L G PR G D HPPI PTK
Sbjct: 345 KFKEGTDLMSLVRAHETHQQWGNYVTRQLLDGGKYEAPRHGNSDDQAHPPIHPTKSVDLN 404
Query: 395 QL-DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
L D D ++Y+++ HF+ D +Q ++ +E F + + + +
Sbjct: 405 TLPDPDEKKVYEFVSLHFLACCSRDAKGSQTSVVMAMLNERFIASGLMVEERNYLDIYKY 464
Query: 454 SAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
+IP +K GD+ ++ M+ T PP L+E++LI+ M+ +GIGTDA+I HI
Sbjct: 465 EKWNASAIPVYKHGDVFRPSTLVMLSGDTNPPPLLSEADLIAKMDSNGIGTDATIAEHIK 524
Query: 514 NICQRNY-VTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
I +R Y + V + + PT+LG+ LV Y+ + EL +P +R+A
Sbjct: 525 TILKREYAIKVNNETQFKPTTLGLALVLSYEHMGLELAKPVLRAA 569
>gi|443894350|dbj|GAC71698.1| DNA topoisomerase III alpha [Pseudozyma antarctica T-34]
Length = 1780
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 205/536 (38%), Positives = 292/536 (54%), Gaps = 29/536 (5%)
Query: 43 PLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLAN 102
P +V +TSV GH+ DF +Y W P +LF+ P + + L N
Sbjct: 850 PGVQGMVDMTVTSVRGHLTNADFGPEYKAWYSCSPADLFTAPVLTNVSDDAKAIGLNLRN 909
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRH-QININSPKTVWRARFSAITDKDIKAAMW 161
EA++ + L++W DCD+EGE+I E++ VR + NI V RARFSAI D I AA
Sbjct: 910 EARNADALMIWTDCDREGEHIGSEIVAEVRKVRRNIR----VMRARFSAIIDSQIHAACQ 965
Query: 162 NLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDAS--LISYGPCQTPTLG 219
N V+ + A +V++R +LDLRIG AFTR QT Q + + +ISYGPCQ PTLG
Sbjct: 966 NTVELDWRAADAVESRIQLDLRIGAAFTRMQTLALQNHIPAFNEARQVISYGPCQFPTLG 1025
Query: 220 FCVERHDKIRTFKPEPYWLLDL--TLNLNGVA------------VSVTWSRGHIFDKSTC 265
F V+R++K+ F PEP+WLL L T +++G V W RGH+FDK
Sbjct: 1026 FVVDRYNKVIEFVPEPFWLLQLHKTRSMSGGDPAPDDPPDQIRKVVFNWDRGHLFDKLAV 1085
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
+ TV +V S K KP L TVEL + S L + P + IAE LY
Sbjct: 1086 EILRDFCRASPLATVDNVNSKQTKKWKPYPLTTVELQKSGSRLLRLTPKRILDIAESLYQ 1145
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPP 384
+G++SYPRTET Q+ + FD A++ +Q + WG + +L +PR G++ HPP
Sbjct: 1146 KGFLSYPRTETDQFDKEFDFNALIAKQTADGAWGGVAQRLLDGAFERPRNGRNNDKAHPP 1205
Query: 385 ITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLH 444
I PT A + L GD R+YDY+ R F+G+ D + TQ SVA E F +L
Sbjct: 1206 IHPTSHA--SNLTGDDKRVYDYVTRRFLGSCWTDAIGTQTTVNVSVAGEKFHASGLVILQ 1263
Query: 445 PGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGT 504
+ V T+ +P F G+ ++M + TT P LTE++L+SLM+K+GIGT
Sbjct: 1264 RNYLEVFTYDKWDGNLLPPFVRGETFTPTRLEMKQGATTAPKLLTEADLVSLMDKNGIGT 1323
Query: 505 DASIPVHINNICQRNYV-TVTSGRR--LVPTSLGIVLVHGYQKIDRE--LVEPTMR 555
DA+I HI + +R YV +V G+ LVP++LG+ LV GY +++ E L +P +R
Sbjct: 1324 DATIAEHIAKVIERQYVMSVKEGKTSYLVPSTLGVGLVEGYNQLNLEKSLCKPVLR 1379
>gi|209875815|ref|XP_002139350.1| DNA topoisomerase family protein [Cryptosporidium muris RN66]
gi|209554956|gb|EEA05001.1| DNA topoisomerase family protein [Cryptosporidium muris RN66]
Length = 843
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 196/509 (38%), Positives = 285/509 (55%), Gaps = 17/509 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELF--SCPTEKREATPKLKLPAFLANEAKDCEFL 110
+TSV GHI L F ++++W+ VDP+ L S P K + + L + +K L
Sbjct: 107 VTSVRGHIKQLKFDPRFSSWETVDPIVLLNLSTPLIKVVSEDCNDIAQNLKHYSKLASTL 166
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
+LWLDCD+EGENI FEV+ ++ N + RARFSA+T DI+ AM NLV PN
Sbjct: 167 ILWLDCDREGENIAFEVISVC---LDANPKLKILRARFSALTKSDIEGAMNNLVAPNRAM 223
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
+ +V+ARQE+DLRIG +FTR+ T +Q K + S +SYGPCQ PTLGF V+R+ KI +
Sbjct: 224 SDAVEARQEIDLRIGSSFTRFLTLRYQ-KLFPIPESTLSYGPCQFPTLGFVVDRYRKIVS 282
Query: 231 FKPEPYWLLDLTLN-------LNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV 283
FK EP+W + +TL+ L + W R IFD V ++ ++ TVV V
Sbjct: 283 FKSEPFWQISVTLSFHSEDGSLKDKLIKFDWIRDRIFDHLAALVIYEFCLEDPIATVVSV 342
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
KP +NTVE+ ++AS L + P M IAE LY +GY+SYPRTET +PE+
Sbjct: 343 HGKQVRNYKPLPMNTVEMTKIASIKLNIPPITTMNIAENLYQKGYISYPRTETNSFPESM 402
Query: 344 DLVAVLRQQESSPDWGDHVREVLSNG-ISKPRKGKDVGD-HPPITPTKLATRTQL-DGDA 400
DL ++R+Q + WG + ++SN PR G + HPPI P K + + +
Sbjct: 403 DLKVIIREQINHQTWGRYASLLISNDKYCNPRCGNSSDESHPPIHPVKCLDQNEATSAEE 462
Query: 401 WRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT-WSAMKNE 459
W+LY+ I RHF+ D + + V +A E F + +L + + +
Sbjct: 463 WKLYELITRHFLAVCSDDAIGQESVVILDIAGEQFKAKGLVVLEENWLDIYKPYERWCGN 522
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
+P+F GD + S+ + + KT PP +TE+ELI LM+K+GIGTDA++ HI I R
Sbjct: 523 VLPEFNQGDKLTPYSIFLSQSKTEPPHLITEAELIDLMDKNGIGTDATMHEHIEKIQTRQ 582
Query: 520 YVTVTSGRRLVPTSLGIVLVHGYQKIDRE 548
YV +L+PTSLG L G+++I +E
Sbjct: 583 YVIKNPRSQLIPTSLGYALALGFEEISKE 611
>gi|168067139|ref|XP_001785482.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662889|gb|EDQ49689.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 915
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 196/523 (37%), Positives = 283/523 (54%), Gaps = 23/523 (4%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+M LDF ++ W DP++LF P K+ K+ L L EA+ C++LVL
Sbjct: 57 MTSVTGHLMELDFEDQFRKWHSCDPVDLFQAPVRKKVPQDKVNLQKTLEEEARHCQWLVL 116
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGENI +EV++ R N+ +WRA FSA+ D++I A+ +L +PN A
Sbjct: 117 WLDCDREGENIAYEVVDVCRAS---NARINIWRAHFSALIDREIHHAVQHLGRPNKMYAD 173
Query: 173 SVDARQELDLRIGCAFTRYQTKF----FQGKYGDLDASLI-SYGPCQTPTLGFCVERHDK 227
+VDARQE+DLRIG +FTR+QT F +G+ D L+ SYGPCQ PTLGF VER+ +
Sbjct: 174 AVDARQEIDLRIGASFTRFQTMLLSDSFVMPFGEDDKKLVLSYGPCQFPTLGFVVERYWQ 233
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
I+ E +W + + +W+RG +FD+ + ++ + TV V
Sbjct: 234 IQAHVAEDFWAIKCFHKAEDGSAEFSWARGRLFDELAAFIIYEMCMERPTATVCQVTGQE 293
Query: 288 KSKTKPQALNTVELMRVASSGLGMG--------PHHAMQIAERLYTQGYVSYPRTETTQY 339
K K P LNTVEL + AS MG +Q+AE LY G++SYPRTET ++
Sbjct: 294 KRKFPPVPLNTVELQKRASRYFRMGYILNYEAVRSQFLQVAEELYQAGFISYPRTETDKF 353
Query: 340 PENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRK----GKDVGDHPPITPTKLAT-RT 394
EN DL +++ +Q WG + + +L ++ G D HPPI PT+ +
Sbjct: 354 SENQDLQSIVNEQIGHSAWGQYAQRLLDPQQQLWKQPGDGGHDDKAHPPIHPTRFSEGEG 413
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
D R+Y+ +VRHF+ + + A +A E FT + + V +
Sbjct: 414 NWTNDHARIYELVVRHFLACVSQPAIGYGTTATIDIAGERFTATGLMITAKNYLDVYRFD 473
Query: 455 AMKNESIPDFKPGD-LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
+IP F+ G IP + V R T PP L+E++LISLM+K GIGTDA++ HI
Sbjct: 474 NWGTSTIPKFEVGQQFIPTRLTLEVGR-TQPPPLLSEADLISLMDKAGIGTDATMHDHIK 532
Query: 514 NICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
+ R Y T + R PT+LG LV GY + EL +P +R+
Sbjct: 533 KLLDRCYATKDANTRFCPTTLGEALVMGYDSMGHELWKPDLRA 575
>gi|297272081|ref|XP_001095437.2| PREDICTED: DNA topoisomerase 3-alpha [Macaca mulatta]
Length = 976
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 202/559 (36%), Positives = 293/559 (52%), Gaps = 37/559 (6%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSSGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCK---TVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQKIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHR 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ L
Sbjct: 270 IKVTHDHKDGIVEFNWKRHRLFNHTACLVLYQ-------------------------LCM 304
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
EL ++AS L + M+IAE+LYTQGY+SYPRTET +P + +L ++ QQ P W
Sbjct: 305 EELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRW 364
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK L GD RLY++IVRHF+
Sbjct: 365 GAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYTN--SLQGDEQRLYEFIVRHFLACCSQ 422
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++ +P ++ G +V+M
Sbjct: 423 DAQGQETTVEIDIAQERFVAHGLVILARNYLDVYPYDHWSDKILPVYERGSRFQPSTVEM 482
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T +R +P LG+
Sbjct: 483 VDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMG 542
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 543 LVEGYDSMGYEMSKPDLRA 561
>gi|348689657|gb|EGZ29471.1| hypothetical protein PHYSODRAFT_470148 [Phytophthora sojae]
Length = 916
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 197/535 (36%), Positives = 300/535 (56%), Gaps = 16/535 (2%)
Query: 36 SVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR--EATPK 93
++ E+ + G V +TSV GHIM LDF + W DP++LF+ P KR +
Sbjct: 38 ALFEFPYQIHGQQVQMVVTSVTGHIMELDFDASVRGWHSCDPVDLFTAPVCKRIRSDDTQ 97
Query: 94 LKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITD 153
K+ L EA+ ++LVLWLDCD+EGENI +EV N V+RARFSA+
Sbjct: 98 KKIEKTLLKEARQSQWLVLWLDCDREGENIAYEVKCICERS---NRRLRVFRARFSALIP 154
Query: 154 KDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL--DASLISYG 211
+DI A+ NL +PN + +VDAR E+DLRIG AFTR+QT Q ++ + + S+ISYG
Sbjct: 155 RDIIHAVQNLAEPNEKLSLAVDARSEIDLRIGAAFTRFQTMRIQSRFPAIKQEKSVISYG 214
Query: 212 PCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNL----NGVAVSVTWSRGHIFDKSTCNV 267
PCQ PTLGF VER KI+ F+ E ++ + +T + + W RGH+FD+ C
Sbjct: 215 PCQFPTLGFVVERFLKIQNFEREAFYYISVTHQQTDQPDAPTTTFKWKRGHLFDRMACLC 274
Query: 268 FFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQG 327
++ + + + T+ V K KP L TVEL + AS L + M+ AE LY +G
Sbjct: 275 IYECLVESQTATIESVDKRPSWKRKPLPLTTVELQKRASRWLRISSEATMKAAESLYNKG 334
Query: 328 YVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNG--ISKPRKGK-DVGDHPP 384
++SYPRTET+++ E DL++++R E+ WG++V + L +G PR G D HPP
Sbjct: 335 FISYPRTETSKFKEGTDLMSLVRLHENHQQWGNYVAQQLLDGGKYEAPRHGNSDDQAHPP 394
Query: 385 ITPTK-LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLL 443
I PTK + T D + ++Y+++ RHF+ D +Q + E FT +
Sbjct: 395 IHPTKSVNVNTLSDPNEKKVYEFVTRHFLACCSRDAKGSQTSVVMRMLGESFTASGLMVE 454
Query: 444 HPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIG 503
+ + + +IP ++ GD+ +V M+ +T PP L+E++LI+ M+ +GIG
Sbjct: 455 ERNYLDIYKYEKWNASAIPVYQRGDVFHPSTVVMLSGETNPPPLLSEADLIAKMDSNGIG 514
Query: 504 TDASIPVHINNICQRNY-VTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
TDA+I HI I +R Y + V + + PT+LG+ LV Y+ + EL +P +R+A
Sbjct: 515 TDATIAEHIKTILKREYAIKVNNDTQFKPTTLGLALVLSYEHMGLELAKPVLRAA 569
>gi|297793983|ref|XP_002864876.1| hypothetical protein ARALYDRAFT_496584 [Arabidopsis lyrata subsp.
lyrata]
gi|297310711|gb|EFH41135.1| hypothetical protein ARALYDRAFT_496584 [Arabidopsis lyrata subsp.
lyrata]
Length = 923
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 187/518 (36%), Positives = 286/518 (55%), Gaps = 20/518 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+M L+F ++Y W DP +L+ P K K + L EA+ ++LVL
Sbjct: 61 MTSVIGHLMELEFANRYRKWHSCDPADLYQAPVMKHVPEDKKDIKKTLEEEARKSDWLVL 120
Query: 113 WLDCDKEGENICFEVME---AVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
WLDCD+EGENI FEV++ AV+H + I RA FSA+ D+DI A+ NL PN
Sbjct: 121 WLDCDREGENIAFEVVDVCRAVKHNLFIR------RAHFSALIDRDIHEAVQNLRDPNQL 174
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKY-----GDLDASLISYGPCQTPTLGFCVER 224
A +VDARQE+DLRIG +FTR+QT + ++ G+ + +ISYGPCQ PTLGF VER
Sbjct: 175 FAEAVDARQEIDLRIGASFTRFQTMLLRDRFAIDSTGEERSRVISYGPCQFPTLGFIVER 234
Query: 225 HDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV- 283
+ +I+ +PE +W ++ + + W RGH+FD ++ + ++ +E TV++V
Sbjct: 235 YWEIQAHEPEEFWTINCSHQSEEGLATFNWMRGHLFDYASAVILYEMCVEEPTATVMNVP 294
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
+ K P LNT+EL + AS + H M++AE LY G++SYPRTET +
Sbjct: 295 HPRERFKYPPYPLNTIELEKRASRYFRLSSEHTMKVAEELYQAGFISYPRTETDSFSSRT 354
Query: 344 DLVAVLRQQESSPDWGDHVREVLS--NGI--SKPRKGKDVGDHPPITPTKLAT-RTQLDG 398
DL A++ +Q P WG + + +L G+ + G D HPPI PTK ++ +
Sbjct: 355 DLCAMVEEQRRHPAWGSYAQRLLEPEGGLWRNPGNGGHDDKAHPPIHPTKFSSGESNWSR 414
Query: 399 DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKN 458
D +Y+ +VRH++ + + + +A E F+ + +L + V + +
Sbjct: 415 DHLNVYELVVRHYLACVSQPAKAAETTVEIDIAGERFSASGRAILAKNYLEVYRFESWGG 474
Query: 459 ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQR 518
IP ++ G ++ + T PP L E++L+S M+K GIGTDA++ HI + R
Sbjct: 475 SVIPVYEKGQQFIPTTLTLDSAVTRPPPLLCEADLLSCMDKAGIGTDATMHDHIKKLLDR 534
Query: 519 NYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
Y T + R PT+LG LV GY + EL +P +R+
Sbjct: 535 GYATKDANTRFSPTNLGEALVMGYDDMGYELWKPNLRA 572
>gi|195580189|ref|XP_002079938.1| GD24215 [Drosophila simulans]
gi|194191947|gb|EDX05523.1| GD24215 [Drosophila simulans]
Length = 857
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 194/515 (37%), Positives = 277/515 (53%), Gaps = 16/515 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+M L F Y NW VDP LF P +K + L E + C+ L++
Sbjct: 53 MTSVSGHMMQLAFQVSYKNWRTVDPRSLFDAPVKKGVGADYEPIKRTLEREVRGCQGLII 112
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGENI +E+++ R I N P V+RA FS IT ++ A+ L +P+ ++
Sbjct: 113 WTDCDREGENIGYEIIDVCR-AIKPNIP--VYRATFSEITTVAVRRALQQLGQPDKRQSD 169
Query: 173 SVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKI 228
+VD R ELDLR G A TR+QT + F K D LISYG CQ PTLGF ER+ +I
Sbjct: 170 AVDVRTELDLRTGAAITRFQTMRLQRLFPEKIAD---KLISYGSCQIPTLGFVAERYKEI 226
Query: 229 RTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCN--VFFKAVEKEKHVTVVDVQSS 286
F EP+W + + ++ + V W+R +FDK C + E + V V
Sbjct: 227 EAFVSEPFWKIKVLHTIDDLTVEFNWARNRLFDKEACENYLLLCLAEPDPRALVESVTVK 286
Query: 287 TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLV 346
K K +P L+TVE+ ++ S L + M IAE+LYT+G++SYPRTET Q+ + F L
Sbjct: 287 PKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTIAEKLYTKGFISYPRTETNQFSKEFALA 346
Query: 347 AVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYD 405
++ Q DWG + V+ G PR G K HPPI PTKLA L G+ R+Y+
Sbjct: 347 PLVEMQTGHRDWGAFAQRVIEWG-PNPRNGNKSDQAHPPIHPTKLAE--NLQGNEARVYE 403
Query: 406 YIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFK 465
+VRHF+ + D V ++ + +A E FT + + V + + I ++
Sbjct: 404 LVVRHFLACVSKDAVGSETLVHIDIAGEKFTANGLVIHERNYLDVYVYDKWSAKQIHHYE 463
Query: 466 PGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS 525
G V + E TT P LTE++LI+LMEKHGIGTDA+ HIN I +R Y+ V
Sbjct: 464 NGQRFEPTEVSLHEGATTAPPLLTEADLIALMEKHGIGTDATHAEHINTIKERGYIGVLD 523
Query: 526 GRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRV 560
LVP +G+ L GY ++ L +P +R+ + +
Sbjct: 524 KGFLVPGVIGMGLYEGYDAMELALAKPQLRAEFEL 558
>gi|195345123|ref|XP_002039125.1| GM17356 [Drosophila sechellia]
gi|194134255|gb|EDW55771.1| GM17356 [Drosophila sechellia]
Length = 1251
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 194/515 (37%), Positives = 278/515 (53%), Gaps = 16/515 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+M L F Y NW VDP LF P +K + + L E + C+ L++
Sbjct: 53 MTSVSGHMMQLAFQVSYKNWRTVDPRSLFDAPVKKGVSADYEPIKRTLEREVRGCQGLII 112
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGENI +E+++ R I N P V+RA FS IT ++ A+ L +P+ ++
Sbjct: 113 WTDCDREGENIGYEIIDVCR-AIKPNIP--VYRATFSEITTVAVRRALQQLGQPDKRQSD 169
Query: 173 SVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKI 228
+VD R ELDLR G A TR+QT + F K D LISYG CQ PTLGF ER+ +I
Sbjct: 170 AVDVRTELDLRTGAAITRFQTMRLQRLFPEKIAD---KLISYGSCQIPTLGFVAERYKEI 226
Query: 229 RTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCN--VFFKAVEKEKHVTVVDVQSS 286
F EP+W + + ++ + V W+R +FDK C + E + V V
Sbjct: 227 EAFVSEPFWKIKVLHTIDDLTVEFNWARNRLFDKEACENYLLLCLAEPDPRALVESVTVK 286
Query: 287 TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLV 346
K K +P L+TVE+ ++ S L + M IAE+LYT+G++SYPRTET Q+ + F L
Sbjct: 287 PKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTIAEKLYTKGFISYPRTETNQFSKEFALA 346
Query: 347 AVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYD 405
++ Q DWG + V+ G PR G K HPPI PTKLA L G+ R+Y+
Sbjct: 347 PLVEMQTGHRDWGAFAQRVIEWG-PNPRNGNKSDQAHPPIHPTKLAE--NLQGNEARVYE 403
Query: 406 YIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFK 465
+VRHF+ + D V ++ + +A E FT + + V + + I ++
Sbjct: 404 LVVRHFLACVSKDAVGSETLVHIDIAGEKFTANGLVIHERNYLDVYVYDKWSAKQIHHYE 463
Query: 466 PGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS 525
G V + E TT P LTE++LI+LMEKHGIGTDA+ HIN I +R Y+ V
Sbjct: 464 NGQRFEPTEVSLHEGATTAPPLLTEADLIALMEKHGIGTDATHAEHINTIKERGYIGVLE 523
Query: 526 GRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRV 560
LVP +G+ L GY ++ L +P +R+ + +
Sbjct: 524 KGFLVPGVIGMGLYEGYDAMELALAKPQLRAEFEL 558
>gi|170596371|ref|XP_001902741.1| DNA topoisomerase III [Brugia malayi]
gi|158589402|gb|EDP28410.1| DNA topoisomerase III, putative [Brugia malayi]
Length = 718
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 189/512 (36%), Positives = 281/512 (54%), Gaps = 7/512 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH++ DF S + NW + LF +K + A L E + + LV+
Sbjct: 1 MTSVSGHLLQHDFPSSFKNWTETPIKVLFDVNVQKSTIPGMEDVRATLIEEIQKSDLLVI 60
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I EV+ +V Q+N N V+RARFS IT + A+ NLV+ +
Sbjct: 61 WTDCDREGEAIGAEVV-SVCTQVNRNLD--VYRARFSEITSAAVNRALNNLVRIDQRLVD 117
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDL--DASLISYGPCQTPTLGFCVERHDKIRT 230
+V+ R ELDLRIG AFTR QT + + + D +++SYG CQ PTLGF VER+ I+
Sbjct: 118 AVECRSELDLRIGAAFTRLQTLHLRNNFTSIFRDKNIVSYGSCQFPTLGFIVERYKAIKE 177
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
F E +W + + + + V W R +FD + V E+ V+ V + KSK
Sbjct: 178 FISETFWKISMKHMRDDILVEFFWDRQRLFDHNIVQVLLDDCEEAGEARVLSVITKPKSK 237
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
+P AL+TVEL ++A L M +AERLY +GY+SYPRTET ++P++ +L ++
Sbjct: 238 WRPVALDTVELEKLAVRKLKFSAKETMVVAERLYNKGYISYPRTETNKFPKDMNLNIYVQ 297
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVR 409
QQ S +WGD +E+ G PR G + HPPI P K AT +L G W LY++IVR
Sbjct: 298 QQTVSGEWGDFAQEIAVRG-PNPRNGSKTDEAHPPIHPLKFATANELIGLEWSLYEFIVR 356
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDL 469
HF+ L D + + V +E FT + G+ V + ++ +P ++ +L
Sbjct: 357 HFLACLSVDAKGQETKVQVRVGNENFTTSGLIVEDYGYLNVYKYDKWSDKILPSYRENEL 416
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRL 529
I +++ E +T PP L E++LI+LM+K+GIGTDA+ HI I R Y + + R
Sbjct: 417 ITSYQLQITEGQTQPPQLLNEADLIALMDKYGIGTDATHAEHIETIKTRQYAALNNDGRF 476
Query: 530 VPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
+P +G+ LV GY ++ + +P MR+ Q
Sbjct: 477 IPGYIGLALVDGYDQMGYAMSKPHMRADLESQ 508
>gi|237834007|ref|XP_002366301.1| DNA topoisomerase III alpha, putative [Toxoplasma gondii ME49]
gi|211963965|gb|EEA99160.1| DNA topoisomerase III alpha, putative [Toxoplasma gondii ME49]
Length = 677
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 186/519 (35%), Positives = 284/519 (54%), Gaps = 14/519 (2%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
VH++ L TSV GH+M LDF S Y NW+ + P +L+ P EK + +
Sbjct: 41 VHQFEFSLQNRSCTMLFTSVRGHLMSLDFASAYQNWNTIPPEDLYGAPVEKNISQDAGDV 100
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L + A+ ++LVLWLDCD+EGENI FEV+ R N+ V+RA FSA+T D+
Sbjct: 101 RKNLVDLARKAQWLVLWLDCDREGENIAFEVLSVCREA---NASLNVFRAVFSALTKADL 157
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTP 216
+ A L P+ ++ +VD R E+DLRIG +FTR+ T ++ + L + ISYGPCQ+P
Sbjct: 158 ERACRTLQAPDRNQSDAVDTRSEIDLRIGASFTRFLTMRYRSRV-KLPSPTISYGPCQSP 216
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTL---------NLNGVAVSVTWSRGHIFDKSTCNV 267
TLGF V R ++ F E YW + +T+ N +++ TW R +FD+ V
Sbjct: 217 TLGFVVSRFVEVENFVREAYWTIRVTISKPDDEKGANAPPLSIDFTWERQRLFDQLAVLV 276
Query: 268 FFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQG 327
++ + TV DV+ + ++K +P L TVEL ++AS L M M IAE LY +G
Sbjct: 277 LYEMCLENPEATVTDVRGTERTKQRPVPLCTVELHKMASRKLRMSSARCMSIAESLYQRG 336
Query: 328 YVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPIT 386
+SYPRTET + DL++++R S WG + ++++ P G +D HPPI
Sbjct: 337 IISYPRTETEVFSPTMDLLSLIRVHIGSTAWGTYAQKLVDGDFLWPSDGARDDKAHPPIH 396
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P KL R++L+ + W+LY+++ RHF+ D + + +A E F +L
Sbjct: 397 PLKLMQRSELEEEEWKLYEFVTRHFLACCSEDAFGFETRVEIDIAGEGFYATGLTVLERR 456
Query: 447 FTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDA 506
+ V + +P F + + S+ M ER+T PP LTE++LI LM+K+GIGTDA
Sbjct: 457 WLDVYPYEQWSGNRLPRFLVNERVMPSSILMSERQTEPPPLLTEADLIDLMDKNGIGTDA 516
Query: 507 SIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKI 545
++ HI I R+Y + VPT LG+ L G++++
Sbjct: 517 TMHDHIRTIQDRHYCYKNENMQFVPTDLGVALYQGFKRL 555
>gi|221486524|gb|EEE24785.1| DNA topoisomerase III alpha, putative [Toxoplasma gondii GT1]
Length = 677
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 186/519 (35%), Positives = 284/519 (54%), Gaps = 14/519 (2%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
VH++ L TSV GH+M LDF S Y NW+ + P +L+ P EK + +
Sbjct: 41 VHQFEFSLQNRSCTMLFTSVRGHLMSLDFASAYQNWNTIPPEDLYGAPVEKNISQDAGDV 100
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L + A+ ++LVLWLDCD+EGENI FEV+ R N+ V+RA FSA+T D+
Sbjct: 101 RKNLVDLARKAQWLVLWLDCDREGENIAFEVLSVCREA---NASLNVFRAVFSALTKADL 157
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTP 216
+ A L P+ ++ +VD R E+DLRIG +FTR+ T ++ + L + ISYGPCQ+P
Sbjct: 158 ERACRTLQAPDRNQSDAVDTRSEIDLRIGASFTRFLTMRYRSRV-KLPSPTISYGPCQSP 216
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTL---------NLNGVAVSVTWSRGHIFDKSTCNV 267
TLGF V R ++ F E YW + +T+ N +++ TW R +FD+ V
Sbjct: 217 TLGFVVSRFVEVENFVREAYWTIRVTISKPDDEKGANAPPLSIDFTWERQRLFDQLAVLV 276
Query: 268 FFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQG 327
++ + TV DV+ + ++K +P L TVEL ++AS L M M IAE LY +G
Sbjct: 277 LYEMCLENPEATVTDVRGTERTKQRPVPLCTVELHKMASRKLRMSSARCMSIAESLYQRG 336
Query: 328 YVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPIT 386
+SYPRTET + DL++++R S WG + ++++ P G +D HPPI
Sbjct: 337 IISYPRTETEVFSPTMDLLSLIRVHIGSTAWGTYAQKLVDGDFLWPSDGARDDKAHPPIH 396
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P KL R++L+ + W+LY+++ RHF+ D + + +A E F +L
Sbjct: 397 PLKLMQRSELEEEEWKLYEFVTRHFLACCSEDAFGFETRVEIDIAGEGFYATGLTVLERR 456
Query: 447 FTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDA 506
+ V + +P F + + S+ M ER+T PP LTE++LI LM+K+GIGTDA
Sbjct: 457 WLDVYPYEQWSGNRLPRFLVNERVMPSSILMSERQTEPPPLLTEADLIDLMDKNGIGTDA 516
Query: 507 SIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKI 545
++ HI I R+Y + VPT LG+ L G++++
Sbjct: 517 TMHDHIRTIQDRHYCYKNENMQFVPTDLGVALYQGFKRL 555
>gi|426192057|gb|EKV41995.1| hypothetical protein AGABI2DRAFT_154568 [Agaricus bisporus var.
bisporus H97]
Length = 703
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 194/516 (37%), Positives = 286/516 (55%), Gaps = 17/516 (3%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK-LPAFLANEAKDCEF 109
F +T V GH++ DFT + W P ELF P E + PK+K + L +A+
Sbjct: 49 FIVTCVSGHLLEHDFTDAHRKWHSCSPGELFDAPIESK-VGPKMKPIEQNLLAQARRVAT 107
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
L++W DCD+EGE+I E++ R N V RARFSAI + I A V+ ++
Sbjct: 108 LMIWTDCDREGEHIGTEIVSVCR---RANRNLVVKRARFSAIIAQQIHRAAQQPVELDLA 164
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
+A +V+AR LDLRIG AFTR QT Q + L ++SYGPCQ PTLGF V+R+++++
Sbjct: 165 QADAVEARILLDLRIGAAFTRMQTLSLQTQVQQLAEKIVSYGPCQFPTLGFAVQRYNQVK 224
Query: 230 TFKPEPYWLLDLTLN----LNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS 285
F PE +W + L+ + + +W+RGH+FD++ V ++ V + + V V +
Sbjct: 225 NFIPEDFWYIFLSHTSDTPMGPRETAFSWNRGHLFDEAVVAVLYEHVLEFPNARVAKVVN 284
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDL 345
K KP L TVEL + S L M P + IAE+LY QG+VSYPRTET Q+ FD
Sbjct: 285 KETKKWKPLPLTTVELQKAGSRLLKMAPKKVLDIAEKLYQQGFVSYPRTETDQFDPQFDF 344
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLY 404
++++++Q++ +WG+ + + G + PRKGK D HPPI PT A L GD R+Y
Sbjct: 345 MSLIQKQKADTNWGNFAQSLEQGGFTSPRKGKHDDKAHPPIHPTAHA--GNLTGDEKRVY 402
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
+YI R F+ D Q + E F +L + V + + IP++
Sbjct: 403 EYIARRFLACCSKDAEGWQTTVEVVCGGEFFHATGLVILKTNYLDVYPYDKWSDHPIPEY 462
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
K G+ +M KT+ P LTE++L++LM+K+GIGTDA+I HI I R YV
Sbjct: 463 KEGESFRPTCCEMRSGKTSKPQLLTEADLVTLMDKNGIGTDATIAQHIQTIVDREYVIER 522
Query: 525 ---SGRRLVPTSLGIVLVHGYQKI--DRELVEPTMR 555
S + LVP++LG+ LV GY +I DR + +P +R
Sbjct: 523 MEGSTKYLVPSTLGVALVEGYDQIGLDRSVSKPQLR 558
>gi|426349252|ref|XP_004042226.1| PREDICTED: DNA topoisomerase 3-alpha [Gorilla gorilla gorilla]
Length = 976
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 202/559 (36%), Positives = 293/559 (52%), Gaps = 37/559 (6%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCK---AVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHR 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ L
Sbjct: 270 IKVTHDHKDGIVEFNWKRHRLFNHTACLVLYQ-------------------------LCM 304
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
EL ++AS L + M+IAE+LYTQGY+SYPRTET +P + +L ++ QQ P W
Sbjct: 305 EELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRW 364
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK L GD RLY++IVRHF+
Sbjct: 365 GAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYTN--SLQGDEQRLYEFIVRHFLACCSQ 422
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++ +P ++ G +V+M
Sbjct: 423 DAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQPSTVEM 482
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T +R +P LG+
Sbjct: 483 VDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMG 542
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 543 LVEGYDSMGYEMSKPDLRA 561
>gi|328766432|gb|EGF76486.1| hypothetical protein BATDEDRAFT_14853, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 612
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 194/508 (38%), Positives = 274/508 (53%), Gaps = 16/508 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MT++ GH+M DF+ ++ +W LF P +K+ L L +++ E LV+
Sbjct: 51 MTALLGHLMESDFSPEWKSWRMATLQHLFGAPIQKKVKQDMKGLADNLRAKSRQSEMLVI 110
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWN-LVKPNIFEA 171
W DCD+EGENI EV++ R N V RARFS I WN LV+ + A
Sbjct: 111 WTDCDREGENIGAEVVQVCRE---TNPNIIVKRARFSVIKQA------WNRLVELDWRAA 161
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+VDAR ELDLRIG FTR+QT QG + +L ++SYGPCQ PTLGF V+R K+++F
Sbjct: 162 AAVDARTELDLRIGAVFTRFQTLQLQGHFKELSEQILSYGPCQFPTLGFVVDRFRKVQSF 221
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
PE +W + L + NG+ WSR H+F++ ++ K T+ V++ KSK
Sbjct: 222 IPEKFWSITLEVTRNGLRAVFGWSRNHLFNRHIVLALYELCMKNPVCTISKVEAKPKSKW 281
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
P L TVEL +V S L M MQ+AE LY +G VSYPRTET + + FDL+ ++ +
Sbjct: 282 APLPLTTVELQKVGSRFLHMSSDRVMQVAEALYNRGIVSYPRTETDCFDDKFDLMPLIEK 341
Query: 352 QESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVRH 410
Q S +WG + +L+ +KPRKGK+ HPPI P + A L GD +++DYI R
Sbjct: 342 QTQSQEWGSYAASLLNGKFTKPRKGKNNDQAHPPIHPVRAA--FDLSGDEKKVFDYITRR 399
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLI 470
F+ + V ++ E FT +L + V + + IP F G+ +
Sbjct: 400 FLACCSAAARGQETVVDLELSQEKFTSSGLMILERNYLEVFPYEKWSDSDIPTFSVGERV 459
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLV 530
++M E TT P LTE++LI+LM+K GIGTDA+I HI I R Y
Sbjct: 460 EPSLLEMREGSTTRPTMLTEADLITLMDKSGIGTDATIHEHIKKILDREYAR-KENIYFF 518
Query: 531 PTSLGIVLVHGYQK--IDRELVEPTMRS 556
PT+LG+ LV Y + ID L P +RS
Sbjct: 519 PTTLGMALVTAYDEMDIDLSLSRPFLRS 546
>gi|336371414|gb|EGN99753.1| hypothetical protein SERLA73DRAFT_52441 [Serpula lacrymans var.
lacrymans S7.3]
Length = 875
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 191/516 (37%), Positives = 281/516 (54%), Gaps = 17/516 (3%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
F +TSV GH++ DF +W DP LF P + + T + L +EA+ L
Sbjct: 49 FTVTSVSGHLLTYDFPDTCRSWKSCDPFYLFDAPVQSKVPTDSKSIERNLMSEARSANTL 108
Query: 111 VLWLDCDKEGENICFEVMEAV-RHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
++W DCD+EGENI EV + + + NI V RARFSAI + I A + ++ ++
Sbjct: 109 MIWTDCDREGENIGHEVAKVCQKARPNI----VVKRARFSAIIPQQIHRAAQHPIELDLA 164
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL--ISYGPCQTPTLGFCVERHDK 227
+A +V+AR LDLRIG AFTR QT Q + L+ +SYGPCQ PTLGF V R+++
Sbjct: 165 QADAVEARIILDLRIGAAFTRMQTLALQSHFAQLNDKREPVSYGPCQFPTLGFVVSRYNQ 224
Query: 228 IRTFKPEPYWLLDLTLN--LNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS 285
+++F PEP+W + L+L+ L W RGHIFD ++ V + + V V
Sbjct: 225 VKSFLPEPFWYIYLSLSRPLGAEETQFNWRRGHIFDWHVAVALYEGVLESRTARVTKVTQ 284
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDL 345
K KP L TVEL + S L + P + IAE+LY QG++SYPRTET Q+ FD
Sbjct: 285 KNTKKWKPLPLTTVELQKAGSRLLKLAPKKVLDIAEKLYQQGFLSYPRTETDQFDPQFDF 344
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLY 404
+ ++ +Q + P WG + G + PRKGK+ HPPI PT A L GD ++Y
Sbjct: 345 MHLIAKQTADPAWGGFATSLQEGGFNVPRKGKNNDKAHPPIHPT--AHVANLAGDEKKVY 402
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
+YI R F+ D ++ E F + +L + V + ++ IP+F
Sbjct: 403 EYIARRFLACCSKDAEGSETTVDVEYGGEQFYVTGLVILQRNYLEVYPYDKWSSKEIPEF 462
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
+ G+ ++ E +T+ P LTE++L++LM+K+GIGTDA+I HI I R YV
Sbjct: 463 REGEEFGPTVCEVREGQTSAPSLLTEADLVTLMDKNGIGTDATIAQHIQTIVDREYVIER 522
Query: 525 ---SGRRLVPTSLGIVLVHGYQKI--DRELVEPTMR 555
S + L+P++LGI L+ GY +I DR L +P +R
Sbjct: 523 MEGSTKHLIPSTLGIGLIEGYNQIGFDRSLSKPQLR 558
>gi|409075215|gb|EKM75598.1| hypothetical protein AGABI1DRAFT_46203 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 852
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 194/516 (37%), Positives = 285/516 (55%), Gaps = 17/516 (3%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK-LPAFLANEAKDCEF 109
F +T V GH++ DFT + W P ELF P E + PK+K + L +A+
Sbjct: 49 FIVTCVSGHLLEHDFTDAHRKWHSCSPGELFDAPIESK-VGPKMKPIEQNLLAQARRVAT 107
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
L++W DCD+EGE+I E++ R N V RARFSAI + I A V+ ++
Sbjct: 108 LMIWTDCDREGEHIGTEIVSVCRR---ANRNLVVKRARFSAIIAQQIHRAAQQPVELDLA 164
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
+A +V+AR LDLRIG AFTR QT Q + L ++SYGPCQ PTLGF V+R+++++
Sbjct: 165 QADAVEARILLDLRIGAAFTRMQTLSLQTQVQQLAEKIVSYGPCQFPTLGFAVQRYNQVK 224
Query: 230 TFKPEPYWLLDLTLN----LNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS 285
F PE +W + L+ + +W RGH+FD++ V ++ V + +V V V +
Sbjct: 225 NFIPEDFWYIFLSHTSDTPMGPRETVFSWKRGHLFDEAVVAVLYEHVLEFPNVRVAKVVN 284
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDL 345
K KP L TVEL + S L M P + IAE+LY QG+VSYPRTET Q+ FD
Sbjct: 285 KQTKKWKPLPLTTVELQKAGSRLLKMAPKKVLDIAEKLYQQGFVSYPRTETDQFDPQFDF 344
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLY 404
++++++Q++ +WG+ + + G + PRKGK D HPPI PT A L GD R+Y
Sbjct: 345 MSLIQKQKADTNWGNFAQSLEQGGFTSPRKGKHDDKAHPPIHPTAHA--GNLTGDEKRVY 402
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
+YI R F+ D Q + E F +L + V + + IP++
Sbjct: 403 EYIARRFLACCSKDAEGWQTTVEVVCGGEFFHATGLVILKTNYLDVYPYDKWSDHPIPEY 462
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
K G+ +M KT+ P LTE++L+++M+K+GIGTDA+I HI I R YV
Sbjct: 463 KEGESFRPTCCEMRSGKTSKPQLLTEADLVTVMDKNGIGTDATIAQHIQTIVDREYVIER 522
Query: 525 ---SGRRLVPTSLGIVLVHGYQKI--DRELVEPTMR 555
S + LVP++LG+ LV GY +I DR + +P +R
Sbjct: 523 MEGSTKYLVPSTLGVALVEGYDQIGLDRSVSKPQLR 558
>gi|395333070|gb|EJF65448.1| prokaryotic type I DNA topoisomerase, partial [Dichomitus squalens
LYAD-421 SS1]
Length = 1032
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 194/507 (38%), Positives = 270/507 (53%), Gaps = 14/507 (2%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
F +TSV GH+M DF Y+ W DP LF P E + + L EA + L
Sbjct: 49 FTVTSVTGHVMDYDFNVMYSKWTSCDPFALFDAPIECKVKDDAKTIADNLKTEAARAQML 108
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
++W DCD+EGENI E+ + N TV RARFSAI + I A + V ++ +
Sbjct: 109 MIWTDCDREGENIGAEIARICQRS---NRNLTVRRARFSAIIAQQIHNAAQHPVNLDMAQ 165
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
A +V+AR LDLRIG AFTR QT Q +Y L LISYGPCQ PTLGF V R++K++
Sbjct: 166 ASAVEARILLDLRIGSAFTRLQTLNLQRRYEALKKELISYGPCQFPTLGFVVARYNKVKN 225
Query: 231 FKPEPYWLLDLTL-----NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS 285
FKPEP+W + L+L + V TW RGH+F ++A + V V S
Sbjct: 226 FKPEPFWYIFLSLTRPSSDEEPVDTEFTWRRGHLFSLPAAWGLYEAALEHPVARVTKVTS 285
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDL 345
K KP L TV+L + S L + P + IAE LY QG++SYPRTET Y FD
Sbjct: 286 KETKKWKPYPLTTVDLQKAGSRLLKLSPKKILDIAEHLYQQGFLSYPRTETDVYDPQFDF 345
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLY 404
++++++Q + P WG + G + PR+GK D HPPI PT A L GD R+Y
Sbjct: 346 MSLIQKQTADPAWGGFASGLREGGFTPPRRGKNDDHAHPPIHPTAHA--GNLVGDEKRVY 403
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
+YI R F+ + D + Q +E F + + V + ++ +P F
Sbjct: 404 EYIARRFLASCSKDALGWQTTVDVKYGEEEFYATGLTIRERNYLEVFPYDKWADKELPQF 463
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV--- 521
+ G+ ++ E +T+ P LTE++L+SLM++HGIGTDA+I HI I R YV
Sbjct: 464 QEGEAFVPTECRLDEGQTSKPKLLTEADLVSLMDEHGIGTDATIAQHIQTIVDRGYVHEK 523
Query: 522 TVTSGRRLVPTSLGIVLVHGYQKIDRE 548
+ + L+P++LGI LV GY I E
Sbjct: 524 MQGATKYLIPSTLGIGLVEGYDAIGFE 550
>gi|428186174|gb|EKX55025.1| hypothetical protein GUITHDRAFT_156833 [Guillardia theta CCMP2712]
Length = 652
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 185/507 (36%), Positives = 273/507 (53%), Gaps = 8/507 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK--LPAFLANEAKDCEFL 110
+TSV GH+M DF + W +P++L + + P+ K L L E + C L
Sbjct: 56 VTSVTGHLMERDFDESHRKWHTCEPIQLLDPSIQVIKMIPQDKKGLERNLLEEGRRCGQL 115
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
V +LDCD+EGENI +EV+E + N V RA FSA+ +DI AM L PN
Sbjct: 116 VCFLDCDREGENISYEVIEICQ---KANPRIRVRRAHFSALIPRDIHRAMRTLTLPNQSL 172
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
+ +V+AR E+DLR+G AFTR+QT ++ L L+S+GPCQ TLGF V+R KI
Sbjct: 173 SEAVEARSEIDLRLGAAFTRFQTMVLGKRFEQLSDKLLSWGPCQFATLGFIVDRAWKIER 232
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
F PE +W L+ +G W RG +FD+ C + ++ + ++ TV V K +
Sbjct: 233 FVPEDFWSFRCNLSRDGKTAHFDWRRGRLFDRVACTLIYEMLMEDPIATVNSVHERLKER 292
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
+P L+TV L +AS L M MQIAE LY +G++SYPRTET ++ E +L ++
Sbjct: 293 WRPLPLSTVNLQTIASRKLRMSSEETMQIAEELYNKGFISYPRTETEKFKEGTNLQELIS 352
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVR 409
+Q S WG++ E+L+ PR G+ D HPPI PT+ L G +LY+ +VR
Sbjct: 353 KQCESGHWGNYANELLAGSFQWPRAGQNDDQAHPPIHPTQFT--NSLSGKQAQLYELVVR 410
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDL 469
HF+ + + + + S+ E F + + + V + ++ IP F G+
Sbjct: 411 HFLACCSKNAIGAETTVEISIGVEQFVSKGLMIKELNWLKVYPYERWSDKDIPIFTEGEQ 470
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRL 529
+ M E +T P L+E++LISLM+ HGIGTDA+I HI + QR+Y + ++
Sbjct: 471 FEPTELAMTEGRTQAPPLLSEADLISLMDSHGIGTDATIAEHITKVQQRDYAIKSDSQQF 530
Query: 530 VPTSLGIVLVHGYQKIDRELVEPTMRS 556
PTSLG LV Y+ I EL P R+
Sbjct: 531 SPTSLGKSLVTSYEAIGLELARPHFRA 557
>gi|403411970|emb|CCL98670.1| predicted protein [Fibroporia radiculosa]
Length = 929
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 193/517 (37%), Positives = 279/517 (53%), Gaps = 17/517 (3%)
Query: 50 LFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEF 109
LF +T+V GH++ DF+ Y+ W DP +LF P E + L NEAK +
Sbjct: 48 LFTITAVTGHLLDYDFSLAYSKWSSCDPFQLFEAPIETSVKKDSKAIAQNLTNEAKRAQT 107
Query: 110 LVLWLDCDKEGENICFEVMEAVRH-QININSPKTVWRARFSAITDKDIKAAMWNLVKPNI 168
L++W DCD+EGENI E+ + R Q NI T+ RARFSAI + I A + V N+
Sbjct: 108 LMIWTDCDREGENIGSEIAQICRRAQRNI----TIKRARFSAIIPQQIHNAAQHPVNLNM 163
Query: 169 FEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKI 228
+A +V+AR LDLR+G AFTR QT Q ++ +L +ISYGPCQ PTLGF V R++++
Sbjct: 164 AQANAVEARIHLDLRVGSAFTRLQTLNLQRRFENLKDDIISYGPCQFPTLGFVVSRYNQV 223
Query: 229 RTFKPEPYWLLDLTLNLNGVA----VSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQ 284
++F PE +W + L+L W RGH+F+ + ++ V V V
Sbjct: 224 KSFVPETFWYIFLSLTTQSPTGDEETVFNWKRGHLFEFDIAMILYEDVLAAPVARVTRVI 283
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD 344
+ K KP L TVEL + S L + P + IAERLY QG +SYPRTET QY FD
Sbjct: 284 TKDTKKWKPLPLTTVELQKKGSRLLRISPKQILDIAERLYQQGILSYPRTETDQYDPQFD 343
Query: 345 LVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRL 403
+ ++ +Q P WG + + +PR G K+ HPPI PT A L GD R+
Sbjct: 344 FMTLVGKQTVDPVWGTFASRLQNGQFGRPRGGQKNDKAHPPIHPTAYA--GNLAGDDKRV 401
Query: 404 YDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPD 463
Y+YI R F+ D + + +E FT + + + V + ++ +P
Sbjct: 402 YEYITRRFLACCSKDALGWETTVTVIYGEEEFTAKGLTVRERNYLEVYPYDKWSDKELPH 461
Query: 464 FKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV 523
F+ G ++ E +TT P+ LTE++L+++M+K+GIGTDA+I HI I RNYV
Sbjct: 462 FEEGQAFVPTVCELREGQTTKPNLLTEADLVTMMDKNGIGTDATIAQHIQTIVDRNYVIE 521
Query: 524 T---SGRRLVPTSLGIVLVHGYQKI--DRELVEPTMR 555
+ + LVP++LGI LV GY I +R + P +R
Sbjct: 522 RMHGTTKYLVPSTLGIGLVEGYDAIGFERSMSRPQLR 558
>gi|391328844|ref|XP_003738893.1| PREDICTED: DNA topoisomerase 3-alpha [Metaseiulus occidentalis]
Length = 689
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 182/534 (34%), Positives = 300/534 (56%), Gaps = 12/534 (2%)
Query: 32 NGAC---SVHEWVGPLFGDL--VLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCP-T 85
+G C ++E+ P F + V +MTS GHI+ F +Y +W+ +DPL LF P
Sbjct: 29 DGLCRYNKIYEFTMPHFRNEANVSARMTSASGHILNFAFPDQYKDWNSIDPLVLFDAPLI 88
Query: 86 EKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWR 145
+K E ++ L E K C+ L++W D D+EGE I FE+++ + + VWR
Sbjct: 89 QKCETETAEQIRRTLEREIKRCKHLIIWTDNDREGEAIGFEIIDICKR---VEPNVRVWR 145
Query: 146 ARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDA 205
A+FS IT I+ A+ +L +PN +V R +LDLRIG AFTR QT ++ +
Sbjct: 146 AKFSEITRSSIERALNSLQEPNQLLNYAVLVRSQLDLRIGAAFTRLQTMRVGRRFSATRS 205
Query: 206 SLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTC 265
+++SYG CQ PTLGF VER+ +I F+ E ++ +++ + + W RG +FD S
Sbjct: 206 NVLSYGSCQFPTLGFVVERYKEIDEFRAERFYKIEVKHVKDELYGEFIWKRGRLFDHSIT 265
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
+ ++ + + H+ + +++ +K+K +PQ ++TV L ++AS L M A+ AE+LYT
Sbjct: 266 LILYERLLERPHMKISTIEAKSKAKFRPQPMDTVSLEKLASRKLRMTAKEALAHAEKLYT 325
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSN-GISKPRKG-KDVGDHP 383
+G +SYPRTET ++P L+ ++ Q SP WGD +++ G PR G K HP
Sbjct: 326 EGLISYPRTETNKFPPEIQLLPLVEAQCQSPQWGDFATRIVNEWGGPHPRNGNKSDQAHP 385
Query: 384 PITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLL 443
PI PTK A + L + ++Y+ +VRHF+ + D ++ K ++ +E F++ ++
Sbjct: 386 PIHPTKYA-QLNLQDNKGKVYELVVRHFLACVSQDARGSETNVKAAIDEEHFSLNGLQII 444
Query: 444 HPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIG 503
+ V + + IP ++ G+ + M E +T+ P LTE++LI+LMEKHGIG
Sbjct: 445 ERNYLDVYPYEKWSAKVIPSYREGETFTPTEILMSEGRTSAPSLLTEADLIALMEKHGIG 504
Query: 504 TDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
TDA+ HI+ + QR Y+ + VP +G+ LV GY + E+ +P +R++
Sbjct: 505 TDATHAEHIDKVKQREYIGMADQIHFVPGQIGMGLVEGYDDMGFEMSKPRLRAS 558
>gi|440300574|gb|ELP93021.1| DNA topoisomerase 3-alpha, putative [Entamoeba invadens IP1]
Length = 611
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 183/512 (35%), Positives = 283/512 (55%), Gaps = 8/512 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+M L+FT ++ NW +P++LF+ P K + + A L + AK + LVL
Sbjct: 56 VTSVSGHLMELEFTPEFRNWGMCNPVDLFTAPVAKYVPSRSKETEANLKDVAKGADTLVL 115
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGENI FEV++ ++N V+RA F+++ +I A L P+ +
Sbjct: 116 WLDCDREGENISFEVIDVCE---SVNKHLKVFRAHFNSLVPVEIARAYRTLTPPDKNLSD 172
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDL-DASLISYGPCQTPTLGFCVERHDKIRTF 231
+VD RQELDLR G AFTR+QT + + L D +ISYG CQ PTLGF ++R+ +I++F
Sbjct: 173 AVDIRQELDLRTGAAFTRFQTTLLKRQVPVLKDLKVISYGACQFPTLGFVIDRYYQIKSF 232
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFK-AVEKEKHVTVVDVQSSTKSK 290
E ++ + + G+ W R +FD+ C + ++ A++K K + ++ +K+
Sbjct: 233 TKEKFYKIKCIVKKEGIETEFLWDRNRLFDRIACLILYEDALDKVKQAKITEILQKSKTN 292
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
KP L TV+L + S + + M IAE+LY G +SYPRTET YP + + L
Sbjct: 293 FKPLPLTTVDLQKSCSKFFKISSNQTMTIAEKLYQSGLISYPRTETNIYPADMNHTKQLE 352
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKLATRTQLDGDAWRLYDYIVR 409
+S +G++V+++L + PR GK HPPI PTKL T L G+ +YD++VR
Sbjct: 353 MFANSNTYGEYVKQLLDGKMKPPRNGKATDKSHPPIHPTKL-IETGLVGNEKTIYDFVVR 411
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDL 469
++ L D + + +E F + + + + + IP+F+ G+
Sbjct: 412 SYLANLSDDARGFETKIGLQIGEESFHANGLVITERNYLDIYKYRKWTEKQIPNFEEGET 471
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRL 529
+ + S+ +T+PP LTE ELI LM+K+GIGTDA+I HI I +R YV V G
Sbjct: 472 VDVTSLTQEMGETSPPKPLTEPELIQLMDKNGIGTDATIAQHIAKIIEREYVVVIKG-GF 530
Query: 530 VPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
PT+LG+ LV GY + E P +R+ Q
Sbjct: 531 SPTNLGLALVEGYDSMGFEFSRPLLRAETERQ 562
>gi|296201147|ref|XP_002747908.1| PREDICTED: DNA topoisomerase 3-alpha [Callithrix jacchus]
Length = 931
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 201/562 (35%), Positives = 300/562 (53%), Gaps = 15/562 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETHQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCK---AVKPSLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQKIFPEVLSEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHR 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V +W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IKVTHDHKDGIVEFSWKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P + +L ++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK L G+ RLY++IVRHF+
Sbjct: 390 GAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYT--NSLQGNEQRLYEFIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + ++ E F +L + V + ++ +P ++ G +V+M
Sbjct: 448 DAQGQETTVEIDISQERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGFRFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIG + +++ Q GR + +L
Sbjct: 508 VDGETSPPKLLTEADLIALMEKHGIG---HLGQEVDSAQQGARSHEGKGRAQLDEALAQY 564
Query: 538 LVHGYQKIDRELVEPTMRSAYR 559
+G + +E + P M R
Sbjct: 565 FGNGTEVAQQEDIYPAMPEPIR 586
>gi|308158051|gb|EFO60919.1| DNA topoisomerase III [Giardia lamblia P15]
Length = 973
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 210/566 (37%), Positives = 304/566 (53%), Gaps = 55/566 (9%)
Query: 38 HEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLP 97
+ +V G F TSV GH+ +DF +++N V LF T
Sbjct: 34 YTFVQSFEGSKETFMCTSVAGHVFEIDFDAEFNG-SSVPQERLFERGHVHYSFTDSGSTV 92
Query: 98 A-FLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
A L + L+L LD D+EGENICFEV++ ++ + N + RARFSA+T +I
Sbjct: 93 AKHLKSIGGKATQLILCLDNDREGENICFEVLKVLKPTLRSNC--RIRRARFSAVTKAEI 150
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTP 216
A NL KP+ + +V+ARQELDL+IG AFTR+QT ++ DL +S+ISYGPCQTP
Sbjct: 151 HNAFCNLDKPDQNLSDAVEARQELDLKIGVAFTRFQTAHLHAQFADLQSSVISYGPCQTP 210
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW------SRGHIFDKSTCNVFFK 270
TL FCV RHD+I+ F+P+ + LD+ + + W SR I +K +
Sbjct: 211 TLSFCVSRHDEIQRFRPKQIFSLDVCALIGDQLCPLRWQGVPSESREVIEEKRA-----R 265
Query: 271 AVEKE--KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGY 328
+EK K + V+ +SS + +P +NTV L++ AS+ LG+ P+ AM +AERLY GY
Sbjct: 266 LLEKSATKCLKVLSFKSSKSTLPRPLPMNTVALLKAASTVLGLSPNSAMALAERLYIAGY 325
Query: 329 VSYPRTETTQYPENFDL--VAVLRQQESSPDWGDHVREVLSNG---------ISKPRKGK 377
+SYPRTE+T YP ++L + + ++ SS + +L + + PRKG
Sbjct: 326 ISYPRTESTTYPSGYNLREIVLALKESSSTRISQSAQNLLPSSKKSVDENVRYTNPRKGT 385
Query: 378 DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQK---VAKFSVADEM 434
D GDHPPI PT L + GD LY+ I +HF+ T+ D VY + V E
Sbjct: 386 DQGDHPPIMPTGLIPHG-VSGDELSLYNLITKHFLATVSPDAVYGHSSLTLQSVDVPSET 444
Query: 435 FTMEAKYLLHPGFTGVMT---WSAMKNESIPD-----------------FKPGDLIPIQS 474
F ++ G+ + + +++M++ + D G + I S
Sbjct: 445 FLFSVTEVIDQGWKALYSTTEFTSMQDNDLSDDLADENLLLDKETLQAISATGATLTIAS 504
Query: 475 VKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV-TSGRR--LVP 531
+ T PP YL+ES+L+ LMEKHGIGTDAS+ HI NI R YV + +GRR LVP
Sbjct: 505 AAIKAGMTRPPAYLSESDLLGLMEKHGIGTDASMATHIGNIVTRAYVELRVTGRRRCLVP 564
Query: 532 TSLGIVLVHGYQKIDRELVEPTMRSA 557
TS+GI L+HGYQ ID +L P +R++
Sbjct: 565 TSMGISLIHGYQLIDGDLSSPQLRAS 590
>gi|166240582|ref|XP_643754.2| DNA topoisomerase III [Dictyostelium discoideum AX4]
gi|74818660|sp|Q8T2T7.1|TOP3_DICDI RecName: Full=DNA topoisomerase 3; AltName: Full=DNA topoisomerase
III
gi|165988670|gb|EAL69909.2| DNA topoisomerase III [Dictyostelium discoideum AX4]
Length = 828
Score = 338 bits (866), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 189/539 (35%), Positives = 286/539 (53%), Gaps = 41/539 (7%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
TSV GH+M +D ++ W DP++LF P K + K L L E K + L+L
Sbjct: 56 FTSVTGHLMEIDVVEQFKPWASCDPIQLFDAPIRKTVPSDKEPLKKTLEREIKKADILIL 115
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGENI FEV+E + N +RA FSAI ++I A NL KPN ++
Sbjct: 116 WLDCDREGENIAFEVLEVCK---NAKKKFEFYRAHFSAIIPREIDRACKNLAKPNEKDSI 172
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDAS-------------------------- 206
+VD R E+DLRIG AFTR+QT + + K+ + S
Sbjct: 173 AVDTRMEIDLRIGAAFTRFQTLYLK-KFKIISNSDNQPKTTTPANGNILNNSNNNSSGKE 231
Query: 207 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDL------TLNLNGVAVSVTWSRGHIF 260
+ISYGPCQ PTLGF VER+ +I FKPE +W L + T + + V+ +W R +F
Sbjct: 232 IISYGPCQFPTLGFVVERYFRIVNFKPEDFWHLSVVHEKMDTSSGKMIPVTFSWCRNRLF 291
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D + + ++ TVVDV +S +S+ +P L T+EL + AS L + MQ A
Sbjct: 292 DYTAAFILYEKCLDNTEATVVDV-TSKESRYRPVPLTTIELQKAASKKLRISSVQTMQYA 350
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNG-ISKPRKGKDV 379
E LYT+G +SYPRTET + DL ++ Q S+P+WG + +++N P+ GK+
Sbjct: 351 EELYTKGLISYPRTETDSFQAGTDLKGLIGNQASNPEWGAYASRLINNNQFVYPKSGKNN 410
Query: 380 GD-HPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
+ HPPI PT AT L G+ ++YD+I R F+ + V+ + E F+
Sbjct: 411 DNSHPPIHPTSSAT--GLSGNLKKIYDFITRRFLACCSEESVFANTTVTIDIQGERFSET 468
Query: 439 AKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
+L G+ V + ++ IP ++ G+ + + + + T P Y+TE+EL++ M+
Sbjct: 469 GTMVLKLGYLEVYPFDKRNDKLIPTYQKGERFTPKRIDLTKGTTVAPHYITEAELLTAMD 528
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
+ IGTDA++ HI I R YV + VP++LG+ LV Y+ + E +P +R+A
Sbjct: 529 NNKIGTDATMATHIQTIQDRFYVKKNESNQFVPSNLGVSLVASYELMGFEFSKPNLRAA 587
>gi|357464743|ref|XP_003602653.1| DNA topoisomerase [Medicago truncatula]
gi|355491701|gb|AES72904.1| DNA topoisomerase [Medicago truncatula]
Length = 587
Score = 337 bits (865), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 191/534 (35%), Positives = 280/534 (52%), Gaps = 40/534 (7%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
TSV GH+M LDF +Y W DP +LF P K K + L EA+ C++L+L
Sbjct: 59 FTSVLGHLMELDFDDRYRKWHSCDPADLFQAPVHKFVPEDKKDIKRTLEEEARRCQWLIL 118
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGENI FEV+ N T+ RARFSA+ D++I A+ NLV+PN + A
Sbjct: 119 WLDCDREGENIAFEVINVC---TAANPNLTIKRARFSALIDREIHQAVQNLVEPNKWFAD 175
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKY-----GDLDASLISYGPCQTPTLGFCVERHDK 227
+VDARQE+DLRIG FTR+QT + + D +++SYGPCQ PTLGF VER+ +
Sbjct: 176 AVDARQEIDLRIGATFTRFQTMLMKDAFVIDTVTDGRNTVLSYGPCQFPTLGFVVERYWE 235
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
I+ +PE +WL+ + + + +W RGH+FD + + ++ +E TV V
Sbjct: 236 IQAHEPEEFWLIKCSHRSDEGVANFSWERGHLFDYTCAVIIYEMCIEEPTATVTKVTPKE 295
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
K K P L+T+EL + AS M M++AE LY G++SYPRTET + DL A
Sbjct: 296 KPKYPPHPLSTIELEKRASRYFRMSSERTMKVAEELYQGGFISYPRTETDNFSSRTDLHA 355
Query: 348 VLRQQESSPDWGDHVREVLSNGIS---KPR-KGKDVGDHPPITPTKL-ATRTQLDGDAWR 402
++++Q+ P+WG + + +L G PR G D HPPI PTK A + D +
Sbjct: 356 IVQEQQGHPEWGIYAQRLLDPGAGLWRNPRGGGHDDQAHPPIHPTKFSAGESGWSQDHRK 415
Query: 403 LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP 462
LY+ +VRHF+ + + + + +A E F+ + +L + + + IP
Sbjct: 416 LYELVVRHFLACVSKPALGAETTVEIDIAGERFSACGRVILERNYLDIYIYDRWDGSMIP 475
Query: 463 DFKPGDLIPIQSV-------------------------KMVERKTTPPDYLTESELISLM 497
++ G+ P + + KT PP L+E++L+S M
Sbjct: 476 NYAIGEQYPKSQIPDGILHQTNPGIPELLLLQFIPTTLTLDPGKTNPPPLLSEADLLSRM 535
Query: 498 EKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVE 551
+K IGTDA++ HI + R Y T + PT+LG LV GY D LVE
Sbjct: 536 DKECIGTDATMHDHIKKLLDRFYATKDANMCFTPTNLGEALVMGYD--DMGLVE 587
>gi|194761190|ref|XP_001962812.1| GF14242 [Drosophila ananassae]
gi|190616509|gb|EDV32033.1| GF14242 [Drosophila ananassae]
Length = 1209
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 185/512 (36%), Positives = 278/512 (54%), Gaps = 10/512 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+M L+F + NW VDP LF P K + L E + C+ L++
Sbjct: 53 MTSVSGHLMQLEFLVSFRNWRNVDPGSLFDAPVRKSVGKDYEPIKRTLEREVRGCQGLII 112
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGENI +E+++ R I TV+RA FS IT ++ A+ L +P+ ++
Sbjct: 113 WTDCDREGENIGYEIIDVCRA---IKPNITVYRANFSEITTVAVRRALQQLGQPDKRQSD 169
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKY-GDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+VD R ELDLR G A TR+QT FQ + + LISYG CQ PTLGF ER+ ++ F
Sbjct: 170 AVDVRSELDLRTGAAITRFQTMRFQRLFPAKIADKLISYGSCQIPTLGFVAERYKEVEAF 229
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTC-NVFFKAVEKEKHVTVVD-VQSSTKS 289
EP+W + + ++ + V W+R +FDK C N +E +V+ V K
Sbjct: 230 VSEPFWKVKVIHTIDDLTVEFNWARNRLFDKEACENYLLLCLEVPAPRALVESVTVKPKH 289
Query: 290 KTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL 349
K +P ++TVE+ ++ S L + M IAE+LY++G++SYPRTET Q+ + F+L+ ++
Sbjct: 290 KWRPTPMDTVEMEKLGSRKLKLSAKETMTIAEKLYSKGFISYPRTETNQFSKEFELLPLV 349
Query: 350 RQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIV 408
Q + WG + V+ G PR G K HPPI PTK A L G+ R+Y+ +V
Sbjct: 350 EMQTGNAAWGPFAQRVVEWG-PNPRNGNKSDQAHPPIHPTKAAD--NLQGNEARVYELVV 406
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGD 468
RHF+ + D V ++ + +A E FT + + V + + I ++
Sbjct: 407 RHFLACVSKDAVGSETLVNIDIAGEKFTANGLVIHERNYLDVYVYDKWSAKQIHHYERNQ 466
Query: 469 LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRR 528
V + E TT P LTE++LI+LMEKHGIGTDA+ HIN I +R Y+ +
Sbjct: 467 RFEPTEVSLHEGATTAPPLLTEADLIALMEKHGIGTDATHAEHINTIKERGYIGMVDKGA 526
Query: 529 LVPTSLGIVLVHGYQKIDRELVEPTMRSAYRV 560
LVP +G+ L GY ++ L +P +R+ + +
Sbjct: 527 LVPGVIGMGLYEGYGAMELALAKPQLRAEFEL 558
>gi|428178558|gb|EKX47433.1| hypothetical protein GUITHDRAFT_50898, partial [Guillardia theta
CCMP2712]
Length = 596
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 200/526 (38%), Positives = 298/526 (56%), Gaps = 22/526 (4%)
Query: 50 LFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEK--REATPKLKLPAFLANEAKDC 107
L TSV GH+ ++F + DP LF +K + + ++ L + A+
Sbjct: 53 LISFTSVIGHVEAMEFDEDTGS----DPRNLFGARVKKVFETSVEEEEVDRHLLSLAEGR 108
Query: 108 EFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPN 167
++L LWLDCD+EGENICFE++ R + S V+RARFSA++ +K + + KPN
Sbjct: 109 QYLFLWLDCDREGENICFEILRLFRSRGYFLSDDVVFRARFSALSSDSLKRSFSSPGKPN 168
Query: 168 IFEARSVDARQELDLRIGCAFTRYQTK-FFQG---KYGDLDASLISYGPCQTPTLGFCVE 223
EA +VDARQE+DL++G FTR T+ F +G K+ D L+S+GPCQTPTL FCV
Sbjct: 169 EEEAMAVDARQEMDLKVGVTFTRLLTRRFLEGARRKFNDSKLKLLSFGPCQTPTLFFCVR 228
Query: 224 RHDKIRTFKPEPYWLLDLTLN-LNGVAVSVT----WSRGHIFDKSTCNVFFKAVEKEKHV 278
R ++IR F P +W +++ + L G + S T W RG FD++ + ++ ++ H
Sbjct: 229 RDEEIRRFVPRKFWRIEVEVEVLVGGSRSRTLDLKWMRGSTFDRNQALLALRSCQQTSHA 288
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQ 338
+V V+ +S P LNTV L+++AS LG P M IAERLYT+GY+SYPRTET++
Sbjct: 289 RLVRVEKKERSLDPPLPLNTVALLQLASLRLGFSPAKTMAIAERLYTRGYISYPRTETSR 348
Query: 339 YPENFDLVAVLRQQESSPDWGDHVREVLSNG-ISKPRKGKDVGDHPPITPTKLATRTQLD 397
+P +FD +LR G V ++L G +S P +G D GDHPPITP K + L
Sbjct: 349 FPPSFDPSDLLRPLVDGSQLGRFVEKMLEEGCVSVPSRGVDRGDHPPITPMKSGSMGSLG 408
Query: 398 GDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVAD-EMFTMEAKYLLHPGFTGVMTWSAM 456
+ RL++ + + + +L + ++ F + E E K G
Sbjct: 409 REERRLWELVASNTVASLMPTFRFLERRGIFKLGGAEDGDEEGKGRTQGAGRGRGRGRGQ 468
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
E + G+ +P++SV++VE +T+ P+ L E+EL+ LM+KHGIGTDASI HI NI
Sbjct: 469 GKEE----QEGESVPVRSVRVVEEETSAPEPLKEAELVQLMDKHGIGTDASISSHIANIL 524
Query: 517 QRNYVTVTSG-RRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
R YV V G R L PT LG+ ++ G +++D LV+P +R+A Q
Sbjct: 525 ARRYVQVRLGVRHLKPTELGLAMIAGLREVDESLVQPRLRAAMEEQ 570
>gi|328871269|gb|EGG19640.1| DNA topoisomerase III [Dictyostelium fasciculatum]
Length = 812
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 179/515 (34%), Positives = 278/515 (53%), Gaps = 23/515 (4%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR-EATPKLKLPAFLANEAKDCEFLV 111
TSV GH+M + +Y W +P+ELF C K ++ L + EA+ C+ LV
Sbjct: 79 FTSVLGHLMNTEVEERYIPWYSCEPVELFHCGVRKYIQSDDNQNLFKTIQREARQCDTLV 138
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
LWLDCD+EGENI FEV++ + N ++RARFS+I +++K A NLV+PN ++
Sbjct: 139 LWLDCDREGENIAFEVIDCA---VKANRNLMIYRARFSSIIPQEVKRACANLVRPNENDS 195
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKY-----GDLDASLISYGPCQTPTLGFCVERHD 226
+VD R E+DLR+G AFTR+QT + +GK+ D D ISYGPCQ PTLGF VER+
Sbjct: 196 IAVDTRIEIDLRLGAAFTRFQTLYLRGKFDLTPGNDEDKQPISYGPCQFPTLGFVVERYL 255
Query: 227 KIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSS 286
+I F PE +W +++ + + V+ W R +FD + + ++ TV+D+Q
Sbjct: 256 RIENFIPEDFWSMNVKHSKEELTVNFGWKRKRLFDHAPAFILYEKCLDNPLATVIDIQKK 315
Query: 287 TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLV 346
+K L + ASS L + M+IAE LY +G++SYPRTET+Q+ + D
Sbjct: 316 NHNK----------LQKSASSKLRISSDRTMKIAEELYNKGFISYPRTETSQFIDGTDFQ 365
Query: 347 AVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKL---ATRTQLDGDAWR 402
++ Q P WG + +L+ +P G+ + HPPI PT D A
Sbjct: 366 GLIGLQTGDPQWGQYATRLLNGEFKRPNDGRTNDHSHPPIHPTNFLPPGAAGAKDPKARE 425
Query: 403 LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP 462
LY++IVRHF+ + + + VA E F+ ++ G+ V + ++ IP
Sbjct: 426 LYEFIVRHFLACCSPESIIAKTTVSIDVAGEKFSESGSMIIRRGYLEVYKYEKRNDKIIP 485
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT 522
++ G+ +K+ +T P L+E EL+S M+ + IGTDA++ HI I +R YV
Sbjct: 486 TYEVGEQFTPTDIKLESGRTVSPRPLSEPELLSAMDSNQIGTDATMAQHIQKIIERGYVI 545
Query: 523 VTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
+ + VPT+LG L+ GY + E +P +R++
Sbjct: 546 KDADQLFVPTNLGKALIVGYDSMGFEFSKPALRAS 580
>gi|159119151|ref|XP_001709794.1| DNA topoisomerase III [Giardia lamblia ATCC 50803]
gi|157437911|gb|EDO82120.1| DNA topoisomerase III [Giardia lamblia ATCC 50803]
Length = 973
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 211/565 (37%), Positives = 306/565 (54%), Gaps = 51/565 (9%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
+ +V G F TSV GH+ +DF ++ N V LF T
Sbjct: 33 TYTFVQSFEGSKETFMCTSVAGHVFEIDFDAELNG-SSVPQERLFERGHVHYSFTDSGST 91
Query: 97 PA-FLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKD 155
A L + L+L LD D+EGENICFEV++ ++ + S V RARFSA+T +
Sbjct: 92 VAKHLKSIGGKAMQLILCLDNDREGENICFEVLKVLKP--TLRSDCRVRRARFSAVTKAE 149
Query: 156 IKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQT 215
I+ A NL KP+ + +V+ARQELDL+IG AFTR+QT ++ DL +S+ISYGPCQT
Sbjct: 150 IQNAFRNLDKPDQNLSDAVEARQELDLKIGVAFTRFQTAHLHAQFADLQSSVISYGPCQT 209
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW------SRGHIFDKSTCNVFF 269
PTL FCV RHD+I+ F+P+ + LD+ + S+ W SR I +K T +F
Sbjct: 210 PTLSFCVSRHDEIQRFRPKQIFSLDVCALIGDQPHSLRWQGVPSESREVIEEKRT-GLFG 268
Query: 270 KAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV 329
K+ K + V+ +SS + +P +NTV L++ AS+ LG+ P+ AM +AERLY GY+
Sbjct: 269 KSA--TKCLKVLSFKSSKSTLPRPLPMNTVALLKAASTVLGLSPNSAMALAERLYIAGYI 326
Query: 330 SYPRTETTQYPENFDL--VAVLRQQESSPDWGDHVREVLSNG---------ISKPRKGKD 378
SYPRTE+T YP ++L + + ++ SS + +L + + PR+G D
Sbjct: 327 SYPRTESTTYPSGYNLREIVLALKESSSTRISQCAQNLLPSSKKSSDESVRYTNPRRGTD 386
Query: 379 VGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVAD---EMF 435
GDHPPI PT L + + LY+ I +HF+ T+ D VY+ D E F
Sbjct: 387 QGDHPPIMPTGLIPH-DVSSNELSLYNLITKHFLATVSPDAVYSHSSLTLQSVDMPSETF 445
Query: 436 TMEAKYLLHPGFTGVMT---WSAMKNESIPD-----------------FKPGDLIPIQSV 475
+ ++ G+ + + +S+M++ + D G + I S
Sbjct: 446 LLSITDVVDQGWKALYSATEFSSMRDNDLSDDLADESISLSKETLQAISATGATLTIASA 505
Query: 476 KMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV-TSGRR--LVPT 532
+ T PP YL+ES+L+ LMEKHGIGTDAS+ HI NI R YV + +GRR LVPT
Sbjct: 506 AIKAGMTKPPGYLSESDLLGLMEKHGIGTDASMATHIGNIVTRAYVELRVTGRRRCLVPT 565
Query: 533 SLGIVLVHGYQKIDRELVEPTMRSA 557
S+GI L+HGYQ ID +L P +R++
Sbjct: 566 SMGISLIHGYQLIDGDLSSPQLRAS 590
>gi|403275443|ref|XP_003929454.1| PREDICTED: DNA topoisomerase 3-alpha [Saimiri boliviensis
boliviensis]
Length = 923
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 183/461 (39%), Positives = 260/461 (56%), Gaps = 7/461 (1%)
Query: 44 LFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANE 103
++G V MTSV GH++ DF ++ W +PL LF EK + + L E
Sbjct: 77 VYGQNVTMVMTSVSGHLLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERE 136
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
+ C+ LV+W DCD+EGENI FE++ + + V RARFS IT ++ A NL
Sbjct: 137 TRQCQALVIWTDCDREGENIGFEIIHVCK---AVKPSLQVLRARFSEITPHAVRTACENL 193
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCV 222
+P+ + +VD RQELDLRIG AFTR+QT Q + + L LISYG CQ PTLGF V
Sbjct: 194 TEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQKIFPEVLAEQLISYGSCQFPTLGFVV 253
Query: 223 ERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVD 282
ER I+ F PE + + +T + V W R +F+ + C V ++ ++ TVV+
Sbjct: 254 ERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCMEDPMATVVE 313
Query: 283 VQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPEN 342
V+S KSK +PQAL+TVEL ++AS L + M+IAE+LYTQGY+SYPRTET +P +
Sbjct: 314 VRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRD 373
Query: 343 FDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAW 401
+L ++ QQ P WG + +L G PR G K HPPI PTK L GD
Sbjct: 374 LNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYT--NSLQGDEQ 431
Query: 402 RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI 461
RLY++IVRHF+ D + + +A E F +L + V + ++ +
Sbjct: 432 RLYEFIVRHFLACCSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDHWSDKIL 491
Query: 462 PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGI 502
P ++ G +V+MV+ +T+PP LTE++LI+LMEKHGI
Sbjct: 492 PVYEQGFRFQPSTVEMVDGETSPPKLLTEADLIALMEKHGI 532
>gi|339245545|ref|XP_003378698.1| DNA topoisomerase 3-alpha [Trichinella spiralis]
gi|316972379|gb|EFV56057.1| DNA topoisomerase 3-alpha [Trichinella spiralis]
Length = 870
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 202/535 (37%), Positives = 293/535 (54%), Gaps = 24/535 (4%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ +FG+L TSV GH++ LDF S Y NW V ELF+ P K + +
Sbjct: 38 IYEFNCTVFGELCRMVFTSVSGHLLNLDFDSIYRNWQSVPVDELFTAPVRKCCSPDMQPV 97
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L E + + LV+W DCD+EGENI FEV+ + + V RA FS +T + I
Sbjct: 98 LRTLQAEVRMVDLLVIWTDCDREGENIGFEVIGVC---LEVKPSLVVKRAVFSELTSQAI 154
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYGP 212
A+ +L +PN + +VD RQE+DLR G AFTR+QT F+ + GD LISYG
Sbjct: 155 TRALASLTEPNALLSDAVDCRQEMDLRTGAAFTRFQTLRLRDTFKRQLGD---KLISYGS 211
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAV 272
CQ PTLG V+R+ + + F E +W L V W RG +FD+ C +
Sbjct: 212 CQFPTLGLVVDRYKQNQAFICETFW----KLVAKHETVEFHWRRGRLFDRHACATLLQLC 267
Query: 273 EKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYP 332
+ V V+S +++ +P AL+TV L ++A LGM AM +AE+LYTQGY+SYP
Sbjct: 268 LESPVAVVRAVRSRKRTRKRPVALDTVGLEKMACKRLGMTAKEAMAVAEKLYTQGYISYP 327
Query: 333 RTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLA 391
RTET +P+ DLV++++Q + WG VLS G+ +PR+G + HPPI P +
Sbjct: 328 RTETNFFPKEIDLVSLVKQHVNDSQWGTFANRVLSQGV-QPRQGNKTDNAHPPIHPIRHV 386
Query: 392 TRTQLDGDAW-RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
Q RLY+++VRHF+ + D Q + VADE F+ + + V
Sbjct: 387 DLEQFQHQQHRRLYEFVVRHFLACISADAQGLQTTVEIEVADEQFSASGLIVTERNYLEV 446
Query: 451 M----TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDA 506
WS + + + GD +Q V+MV +T PP+ LTE++LI LMEK GIGTDA
Sbjct: 447 YHPYENWSEKQLDVA--YAVGDRFDVQ-VEMVTGETKPPNLLTEADLIGLMEKFGIGTDA 503
Query: 507 SIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
+ HI I +R YV +T+ +RL+P LG+ LV GY I +L +P +R+ + +
Sbjct: 504 THAEHIETIQKRLYVGLTADKRLLPGFLGLGLVDGYDAIGCQLAKPDLRADFETE 558
>gi|393245510|gb|EJD53020.1| prokaryotic type I DNA topoisomerase [Auricularia delicata
TFB-10046 SS5]
Length = 613
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 189/515 (36%), Positives = 281/515 (54%), Gaps = 15/515 (2%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
F +T+V GH+ DF S Y W DP +LF P E + + L EA+ + L
Sbjct: 49 FTVTAVRGHLKEHDFPSDYRKWSATDPFDLFDAPVESTVSKDGKFIERNLVAEARSADML 108
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
++W DCD+EGE+I E+ E + N V RARFSAI + I A N V + +
Sbjct: 109 MIWTDCDREGEHIGAEIAEVCQ---KANRRIQVRRARFSAIIAQQIHQAAQNTVDLDYRQ 165
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
+V+AR LDLR+G AFTR QT Q ++ +LD +ISYGPCQ PTLGF V R+++++
Sbjct: 166 VDAVEARTVLDLRLGAAFTRLQTLKLQNQFQELDGQVISYGPCQFPTLGFVVSRYEQVQA 225
Query: 231 FKPEPYWLLDLTL--NLNG--VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSS 286
F+PEP+W + L + N++G W RGHIF+ ++ V ++ V V+
Sbjct: 226 FRPEPFWYIYLAISPNVDGEETETEFKWRRGHIFEFQVALAIYEMVLEDPTARVSSVKKK 285
Query: 287 TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLV 346
+ K KP L TVEL + S L + P + +AE LY +G++SYPRTET Q+ FD +
Sbjct: 286 SVKKWKPLPLTTVELQKAGSRLLRLAPKKVLDLAEGLYQKGFLSYPRTETDQFDPQFDFM 345
Query: 347 AVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYD 405
+++ +Q+ P WG + + G + PR+G KD HPPI PT A L GD R+Y+
Sbjct: 346 SLIDKQKVDPAWGAFATSLQNGGFATPRRGKKDDKAHPPIHPTAHA--GNLAGDEKRVYE 403
Query: 406 YIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFK 465
+I R F+ D + + + E F +L + V + + +PDF+
Sbjct: 404 FITRRFLACCSKDAEGWETTIEITCGGEEFFTTGLTVLARNYLEVYPYDKWGDRYVPDFE 463
Query: 466 PGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT- 524
G ++ + +TT P LTE++L++LM+K+GIGTDA+I HI I R YV
Sbjct: 464 EGAEFMPSVCELRDGQTTRPSLLTEADLVTLMDKNGIGTDATIAQHIQTIIDREYVMARM 523
Query: 525 --SGRRLVPTSLGIVLVHGYQKI--DRELVEPTMR 555
+ + LVP++LGI LV GY +I D+ L +P +R
Sbjct: 524 EGNTKYLVPSTLGIALVEGYNRIGFDKSLSKPQLR 558
>gi|313245530|emb|CBY40233.1| unnamed protein product [Oikopleura dioica]
Length = 914
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 184/513 (35%), Positives = 281/513 (54%), Gaps = 8/513 (1%)
Query: 46 GDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAK 105
G F MTSV GH+ +F +++NW V+P LF P K+ K+ L +++
Sbjct: 46 GHQADFVMTSVSGHMQNYEFPKQFSNWSSVNPDSLFDAPISKQVTKNMHKVKQNLEQQSR 105
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
L++W DCD+EGENI EV+ + N V RARFS IT ++ A+ NL
Sbjct: 106 IHAVLIIWTDCDREGENIGAEVVNVCKR---ANRNLRVLRARFSEITQTAVRRAIANLAP 162
Query: 166 PNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERH 225
N A +VDARQELDLRIG +FTR Q+ F Q ++ L + L+S+G CQ PTLGF VER
Sbjct: 163 LNTLVAEAVDARQELDLRIGASFTRLQSLFLQRRFPALASRLVSFGSCQFPTLGFVVERW 222
Query: 226 DKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS 285
I F+PE +W +++ G+ TWSR +F + + +E+ V ++S
Sbjct: 223 RSIEEFQPEKFWKIEVHHTRGGMNTLFTWSRVRLFSQRAVVAIYDEIEESGRAKVTHLES 282
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDL 345
KSK +P L TVEL + LG+ M +AE+LY +GY+SYPRTET +P++ DL
Sbjct: 283 KPKSKWRPFPLETVELEKKGRM-LGLTAKEIMSVAEKLYLKGYISYPRTETNIFPKSLDL 341
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLY 404
++ Q+ + ++L NG++ PR GK + HPPI P K L G +++
Sbjct: 342 RPMVEAQQRDNRFTTFASDILQNGLN-PRNGKKTDEAHPPIHPLKEG--AGLVGPEAKVH 398
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
++I R F+ L D + K VA+E FT + + G+ + + ++++P +
Sbjct: 399 EFISRRFLACLSRDATGFETTCKIEVAEEEFTAKGLLISDRGYLEIYPYDKWSDKTLPSY 458
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
+ + I + ++ E T+ P YL+E +LI LM+K+GIGTDA+ HI I R Y+++T
Sbjct: 459 RFNEEFMITNAELCESSTSAPLYLSEPDLIGLMDKYGIGTDATHADHIATIQSRGYISLT 518
Query: 525 SGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
+R +P+SLGI LV Y+ + L +RS
Sbjct: 519 REKRFIPSSLGIGLVTAYEDLSIPLANHLLRSG 551
>gi|313212908|emb|CBY36814.1| unnamed protein product [Oikopleura dioica]
Length = 929
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 184/513 (35%), Positives = 281/513 (54%), Gaps = 8/513 (1%)
Query: 46 GDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAK 105
G F MTSV GH+ +F +++NW V+P LF P K+ K+ L +++
Sbjct: 46 GHQADFVMTSVSGHMQNYEFPKQFSNWSSVNPDSLFDAPISKQVTKNMHKVKQNLEQQSR 105
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
L++W DCD+EGENI EV+ + N V RARFS IT ++ A+ NL
Sbjct: 106 IHAVLIIWTDCDREGENIGAEVVNVCKR---ANRNLRVLRARFSEITQTAVRRAIANLAP 162
Query: 166 PNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERH 225
N A +VDARQELDLRIG +FTR Q+ F Q ++ L + L+S+G CQ PTLGF VER
Sbjct: 163 LNTLVAEAVDARQELDLRIGASFTRLQSLFLQRRFPALASRLVSFGSCQFPTLGFVVERW 222
Query: 226 DKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS 285
I F+PE +W +++ G+ TWSR +F + + +E+ V ++S
Sbjct: 223 RSIEEFQPEKFWKIEVHHTRGGMNTLFTWSRVRLFSQRAVVAIYDEIEESGRAKVTHLES 282
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDL 345
KSK +P L TVEL + LG+ M +AE+LY +GY+SYPRTET +P++ DL
Sbjct: 283 KPKSKWRPFPLETVELEKKGRM-LGLTAKEIMSVAEKLYLKGYISYPRTETNIFPKSLDL 341
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLY 404
++ Q+ + ++L NG++ PR GK + HPPI P K L G +++
Sbjct: 342 RPMVEAQQRDNRFTTFASDILQNGLN-PRNGKKTDEAHPPIHPLKEG--AGLVGPEAKVH 398
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
++I R F+ L D + K VA+E FT + + G+ + + ++++P +
Sbjct: 399 EFISRRFLACLSRDATGFETTCKIEVAEEEFTAKGLLISDRGYLEIYPYDKWSDKTLPSY 458
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
+ + I + ++ E T+ P YL+E +LI LM+K+GIGTDA+ HI I R Y+++T
Sbjct: 459 RFNEEFMITNAELCESSTSAPLYLSEPDLIGLMDKYGIGTDATHADHIATIQSRGYISLT 518
Query: 525 SGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
+R +P+SLGI LV Y+ + L +RS
Sbjct: 519 REKRFIPSSLGIGLVTAYEDLSIPLANHLLRSG 551
>gi|313216789|emb|CBY38031.1| unnamed protein product [Oikopleura dioica]
gi|313233526|emb|CBY09698.1| unnamed protein product [Oikopleura dioica]
Length = 933
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 184/513 (35%), Positives = 281/513 (54%), Gaps = 8/513 (1%)
Query: 46 GDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAK 105
G F MTSV GH+ +F +++NW V+P LF P K+ K+ L +++
Sbjct: 46 GHQADFVMTSVSGHMQNYEFPKQFSNWSSVNPDSLFDAPISKQVTKNMHKVKQNLEQQSR 105
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
L++W DCD+EGENI EV+ + N V RARFS IT ++ A+ NL
Sbjct: 106 IHAVLIIWTDCDREGENIGAEVVNVCKR---ANRNLRVLRARFSEITQTAVRRAIANLAP 162
Query: 166 PNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERH 225
N A +VDARQELDLRIG +FTR Q+ F Q ++ L + L+S+G CQ PTLGF VER
Sbjct: 163 LNTLVAEAVDARQELDLRIGASFTRLQSLFLQRRFPALASRLVSFGSCQFPTLGFVVERW 222
Query: 226 DKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS 285
I F+PE +W +++ G+ TWSR +F + + +E+ V ++S
Sbjct: 223 RSIEEFQPEKFWKIEVHHTRGGMNTLFTWSRVRLFSQRAVVAIYDEIEESGRAKVTHLES 282
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDL 345
KSK +P L TVEL + LG+ M +AE+LY +GY+SYPRTET +P++ DL
Sbjct: 283 KPKSKWRPFPLETVELEKKGRM-LGLTAKEIMSVAEKLYLKGYISYPRTETNIFPKSLDL 341
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLY 404
++ Q+ + ++L NG++ PR GK + HPPI P K L G +++
Sbjct: 342 RPMVEAQQRDNRFTTFASDILQNGLN-PRNGKKTDEAHPPIHPLKEG--AGLVGPEAKVH 398
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
++I R F+ L D + K VA+E FT + + G+ + + ++++P +
Sbjct: 399 EFISRRFLACLSRDATGFETTCKIEVAEEEFTAKGLLISDRGYLEIYPYDKWSDKTLPSY 458
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
+ + I + ++ E T+ P YL+E +LI LM+K+GIGTDA+ HI I R Y+++T
Sbjct: 459 RFNEEFMITNAELCESSTSAPLYLSEPDLIGLMDKYGIGTDATHADHIATIQSRGYISLT 518
Query: 525 SGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
+R +P+SLGI LV Y+ + L +RS
Sbjct: 519 REKRFIPSSLGIGLVTAYEDLSIPLANHLLRSG 551
>gi|195436636|ref|XP_002066263.1| GK18189 [Drosophila willistoni]
gi|194162348|gb|EDW77249.1| GK18189 [Drosophila willistoni]
Length = 1234
Score = 334 bits (857), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 185/526 (35%), Positives = 278/526 (52%), Gaps = 10/526 (1%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
V ++ + G MTSV GH+M L+F Y NW VDP LF P +K +
Sbjct: 37 VFDFEAQVRGQNAKMVMTSVSGHLMQLEFQVSYRNWRTVDPRSLFDAPIKKSVGEKYAPI 96
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L E + C+ L++W DCD+EGENI FE++E R I V+RA FS IT +
Sbjct: 97 KRTLEREIRGCQGLIIWTDCDREGENIGFEIIEVCR---GIKPNLKVYRASFSEITSAAV 153
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKY-GDLDASLISYGPCQT 215
+ A+ L +P+ ++ +VD R ELDLR G + TR+QT Q + ++ LISYG CQ
Sbjct: 154 RRALQQLGEPDKRQSDAVDVRSELDLRTGASITRFQTMRLQRLFPENIADKLISYGSCQI 213
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKA--VE 273
PTLGF ER+ ++ F EP+W + + + + V W+R +F+K C + E
Sbjct: 214 PTLGFVAERYKEVEAFVSEPFWKVKVLHTIEDLTVEFNWARNRLFNKEECENYLMLCLAE 273
Query: 274 KEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333
V +V K K +P L+TVE+ ++ S L + M IAE+LY++G++SYPR
Sbjct: 274 PAPRALVENVTVKPKHKWRPTPLDTVEMEKMGSRKLKLSAKETMTIAEKLYSKGFISYPR 333
Query: 334 TETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLAT 392
TET Q+ + F+LV ++ + DWG + VL G PR G K HPPI P K A
Sbjct: 334 TETNQFTKEFNLVPLVELHKDHNDWGAFAQRVLDWG-PNPRNGNKSDQAHPPIHPIKAAI 392
Query: 393 RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
L G+ R+Y+ +VRHF+ + D V ++ + +A E F+ + + V
Sbjct: 393 --NLQGNEARVYEMVVRHFLACVSKDAVGSETIVNIDIAGEKFSANGLVIHERNYLDVYV 450
Query: 453 WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHI 512
+ + I ++ V + E TT P LTE++LI+LM+KHGIGTDA+ HI
Sbjct: 451 YEKWNAKQIHHYERDQRFEPTEVSLHEGATTAPPLLTEADLIALMDKHGIGTDATHAEHI 510
Query: 513 NNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAY 558
+ I +R Y+ V LVP +G+ L GY ++ L +P +R+ +
Sbjct: 511 STIKERGYIGVIDKGFLVPGVIGMGLYEGYDAMELALAKPLLRAEF 556
>gi|260946535|ref|XP_002617565.1| hypothetical protein CLUG_03009 [Clavispora lusitaniae ATCC 42720]
gi|238849419|gb|EEQ38883.1| hypothetical protein CLUG_03009 [Clavispora lusitaniae ATCC 42720]
Length = 627
Score = 334 bits (856), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 187/519 (36%), Positives = 283/519 (54%), Gaps = 15/519 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK----LPAFLANEAKDCE 108
MT+V GHI+G DF +Y W K P LF P + + K K + + EA+ +
Sbjct: 54 MTAVSGHILGTDFGPEYA-WGKCPPGRLFDAPFITKVSQDKDKRSQRIHDNIIKEARSAD 112
Query: 109 FLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNI 168
L++W DCD+EGE I +E+M + + + WRA+FS + + A N ++ ++
Sbjct: 113 RLMIWTDCDREGEYIGWEIMHVAQQRNPSITLANTWRAQFSHLEPSHVVHAACNPLQLDM 172
Query: 169 FEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKI 228
+VD R+E DLR+G +FTR+ T ++ K D ++SYG CQ PTL F V+R+ ++
Sbjct: 173 KLVEAVDCRKEFDLRVGTSFTRFLTNLYKSKSLVGDKDVVSYGTCQFPTLSFVVDRYLRV 232
Query: 229 RTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV-DVQSST 287
R F+PEP+W +DL ++ VS +WSRGH+FDK+ + + + + +V V +
Sbjct: 233 RKFRPEPFWFIDLVVDQKNQKVSFSWSRGHLFDKAFVYLLYAQIMRSNSPPIVSSVGTKP 292
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
S +P L TVEL + S M A+ AE LYT G++SYPRTET +PEN DL +
Sbjct: 293 TSHYRPFPLTTVELQKCCSRYFRMSAKQALDAAESLYTAGFISYPRTETDSFPENMDLKS 352
Query: 348 VLRQQESSPDWGDHVREVLS-NGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYD 405
+ +Q WG + + S N PR GK D HPPI P K A L GD ++Y+
Sbjct: 353 YITKQAQDARWGSYANMLTSENRYRHPRGGKHDDKAHPPIYPVKYANIDSLRGDQKKVYE 412
Query: 406 YIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE-SIPDF 464
++VR F+ D Q + E F+ + F V ++ K+ +P+F
Sbjct: 413 FVVRRFLACCSDDARGFQTKVEVQWTSEKFSASGVQVTERNFLDVYPYTDWKSSVQLPEF 472
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
+ G+ + S K+ E KTT P+Y+TE+ELI+LM+ +GIGTDA+I HI+ I RNY++
Sbjct: 473 RNGETLKAHSCKLKEGKTTAPNYMTETELIALMDANGIGTDATIAEHIDKIITRNYISRR 532
Query: 525 SGRR---LVPTSLGIVLVHGYQK--IDR-ELVEPTMRSA 557
+ +PTSLGI L+ + IDR L +P +R A
Sbjct: 533 KQGKNEIFIPTSLGISLIQAFDAILIDRISLSKPFLRRA 571
>gi|358368744|dbj|GAA85360.1| DNA topoisomerase III [Aspergillus kawachii IFO 4308]
Length = 629
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 181/502 (36%), Positives = 270/502 (53%), Gaps = 12/502 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ GLDF +Y W P LF P + A K+ + + +A+ C+ L +
Sbjct: 59 MTSVIGHLTGLDFERQYRTWLSCPPSALFEAPVHESVADDKVAIAKNIQEQARRCKALFI 118
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I E+ + + N+ + RARFS + A +L++ + +A
Sbjct: 119 WTDCDREGEHIGTEIRKQAKEG---NARIVIKRARFSNTEKAHVLHAARSLIELDDLQAN 175
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V AR ELDLRIG AFTR QT + L ++ISYG CQ PTLGF V+R+ +++ FK
Sbjct: 176 AVAARIELDLRIGAAFTRLQTLQLKPLSAALQDTIISYGSCQFPTLGFVVDRYLRVKNFK 235
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE +W + + + + V+ W R H+FD++ V + K V V SK +
Sbjct: 236 PETFWGIKVMHTRDDIKVNFLWKRVHLFDRAAVTVMLERCLMAKKAKVTKVTQKPTSKWR 295
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TV+L + S L M M++AE LYT+G++SYPRTET Q+ + DL ++ +Q
Sbjct: 296 PLPLTTVDLQMMGSRYLRMDSQTIMKVAEALYTKGFISYPRTETDQFDKGIDLKKLVEKQ 355
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
+WG + R +L PR G+ + HPPI P T L D ++Y+++VR F
Sbjct: 356 LPDGNWGQYARHLLDGAFKTPRSGRHNDQAHPPIHPICWVAPTALTADEKKVYEFVVRRF 415
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLI 470
+ D + DE F + +L + V + + ++ +P+F+ G++
Sbjct: 416 LACCSEDAKGQSTEVEIQYGDEFFHAKGLLVLERNYLDVYVYDKWESSQQLPNFQMGEMF 475
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV---TSGR 527
K+ + KTTPP+YLTE ELI LM+ +GIGTDA++ HI I +R YV V SGR
Sbjct: 476 EPTEAKIFDGKTTPPNYLTEPELIGLMDANGIGTDATMAEHIAKIKERQYVAVHSRGSGR 535
Query: 528 ----RLVPTSLGIVLVHGYQKI 545
L+PT LGI LV GY +
Sbjct: 536 NAVKELIPTRLGIALVEGYDNV 557
>gi|71016361|ref|XP_758895.1| hypothetical protein UM02748.1 [Ustilago maydis 521]
gi|46098326|gb|EAK83559.1| hypothetical protein UM02748.1 [Ustilago maydis 521]
Length = 1325
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 199/536 (37%), Positives = 289/536 (53%), Gaps = 29/536 (5%)
Query: 43 PLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLAN 102
P +V MTSV GH+ DF ++ W P +LF P + + L
Sbjct: 140 PGVQGMVDMTMTSVRGHLTNTDFGPQHKAWFSCPPADLFQAPVITNLSDDAKDIGTNLRL 199
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRH-QININSPKTVWRARFSAITDKDIKAAMW 161
EA++ + +++W DCD+EGE+I E++ VR + NI V RARFSAI D I AA
Sbjct: 200 EARNADAVMIWTDCDREGEHIGSEIVAEVRKVRRNIR----VMRARFSAIIDSQIHAACQ 255
Query: 162 NLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDAS--LISYGPCQTPTLG 219
N V+ + A +V++R +LDLRIG AFTR QT Q + L +ISYGPCQ PTLG
Sbjct: 256 NTVELDWRAADAVESRIQLDLRIGAAFTRMQTLALQNRIPALGEQRHVISYGPCQFPTLG 315
Query: 220 FCVERHDKIRTFKPEPYWLLDL--TLNLNG------------VAVSVTWSRGHIFDKSTC 265
F V+R+ K+ F PEP+WLL + + +++G V W R H+FDK
Sbjct: 316 FVVDRYKKVVHFVPEPFWLLQVHKSRSMSGGDPSPDDPPEEIRKVVFNWDRVHLFDKCAV 375
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
+F K TV V + K KP L TVEL + S L + P + +AE LY
Sbjct: 376 QIFCKLCRDNPDATVDSVATKQTKKWKPYPLTTVELQKSGSRLLRLTPKRILDVAESLYQ 435
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPP 384
+G++SYPRTET +Y ++ D +++ +Q + WG+ + +L +PR GK+ HPP
Sbjct: 436 KGFLSYPRTETDEYDKDLDFTSLIAKQTADSAWGNVAQRLLDGAFERPRNGKNNDKAHPP 495
Query: 385 ITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLH 444
I PT A + L GD R+YDY+ R F+ + D + Q S+A E F +L
Sbjct: 496 IHPTSHA--SGLTGDDKRVYDYVTRRFLASCWTDAIGNQTSVAISIAGEKFHASGLVILQ 553
Query: 445 PGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGT 504
+ V T+ + +P F G+ ++M E T+PP LTE++L+SLM+K+GIGT
Sbjct: 554 RNYLEVFTYDKWEGNLLPPFVRGETFRPTRLEMKEGATSPPKLLTEADLVSLMDKNGIGT 613
Query: 505 DASIPVHINNICQRNYV-TVTSGRR--LVPTSLGIVLVHGYQKIDRE--LVEPTMR 555
DA+I HI + +R YV V G+ LVP++LGI LV GY +++ E L +P +R
Sbjct: 614 DATIADHIAKVVERRYVMQVKEGKTTYLVPSTLGIGLVEGYNQLNMEKSLSKPLLR 669
>gi|343429570|emb|CBQ73143.1| related to DNA topoisomerase III alpha [Sporisorium reilianum SRZ2]
Length = 998
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 201/536 (37%), Positives = 288/536 (53%), Gaps = 29/536 (5%)
Query: 43 PLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLAN 102
P +V MTSV GH+ DF ++ W P +LF P + + L
Sbjct: 45 PGVQGMVDMTMTSVRGHLTNADFGPQHKGWFSCSPADLFQAPIITDLSDDAKAIGTNLRM 104
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRH-QININSPKTVWRARFSAITDKDIKAAMW 161
EA++ + +++W DCD+EGE+I E++ VR + NI V RARFSAI D I AA
Sbjct: 105 EARNADAVMIWTDCDREGEHIGSEIVTEVRKVRRNIR----VMRARFSAIIDSQIHAACQ 160
Query: 162 NLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL--DASLISYGPCQTPTLG 219
N V + A +V++R +LDLRIG AFTR QT Q + L +ISYGPCQ PTLG
Sbjct: 161 NTVDLDWRAADAVESRIQLDLRIGAAFTRMQTLALQNRIPALGEQRQVISYGPCQFPTLG 220
Query: 220 FCVERHDKIRTFKPEPYWLLDL--TLNLNGVA------------VSVTWSRGHIFDKSTC 265
F V+R++K+ F PEP+WLL + T +++G V W R H+FDK
Sbjct: 221 FVVDRYNKVVHFVPEPFWLLQVHKTRSMSGGDPSPDDPPDDIRKVVFNWDRVHLFDKRVV 280
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
+F TV +V K KP L TVEL + S L + P + +AE LY
Sbjct: 281 QIFRDLCRANPDATVDNVTDKQTKKWKPYPLTTVELQKSGSRLLRLTPKRILDVAESLYQ 340
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPP 384
+G++SYPRTET QY ++FD +++ +Q + WG+ + +L +PR GK+ HPP
Sbjct: 341 KGFLSYPRTETDQYDKDFDFTSLIAKQTADGAWGNIAQRLLDGDFERPRNGKNNDKAHPP 400
Query: 385 ITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLH 444
I PT A L GD R+YDY+ R F+ + D + TQ S+A E F +L
Sbjct: 401 IHPTSHA--NGLTGDDKRVYDYVTRRFLASCWKDAIGTQTTVSISIAGERFHASGLVILQ 458
Query: 445 PGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGT 504
+ V T+ + +P F G+ +M E T+PP LTE++L++LM+K+GIGT
Sbjct: 459 RNYLEVFTYDKWEGNLLPPFVRGETFRPTRFEMKEGSTSPPKLLTEADLVNLMDKNGIGT 518
Query: 505 DASIPVHINNICQRNYV-TVTSGRR--LVPTSLGIVLVHGYQKIDRE--LVEPTMR 555
DA+I HI + +R YV V G+ LVP++LGI LV GY +++ E L +P +R
Sbjct: 519 DATIAEHIAKVIERRYVMQVKEGKTTYLVPSTLGIGLVEGYNQLNLEKSLSKPLLR 574
>gi|325191457|emb|CCA26230.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2383
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 195/519 (37%), Positives = 281/519 (54%), Gaps = 17/519 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP--KLKLPAFLANEAKDCEFL 110
TSV GH+M L+FT Y W DP ELF+ P K+ + K+ L EA+ ++L
Sbjct: 78 FTSVIGHLMELNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWL 137
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
VLWLDCD+EGENI FEV N+NS ++RA+FSA+ DIK A+ NL N
Sbjct: 138 VLWLDCDREGENIAFEVKSICE---NVNSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNL 194
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL--DASLISYGPCQTPTLGFCVERHDKI 228
+ + DAR E+DLRIG AFTR+QT Q K+ + D +ISYGPCQ PTLGF VERH +I
Sbjct: 195 SLACDARSEIDLRIGAAFTRFQTMRLQQKFPGIQKDRGVISYGPCQFPTLGFVVERHLEI 254
Query: 229 RTFKPEPYWLLDLTLNLNG-----VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV 283
F E ++ + + + + + TW R ++D+ +C V ++ V + T+ V
Sbjct: 255 ENFVREEFYHIVVVHSPSEPLDKRASTKFTWKRQRLYDRLSCLVIYELVLQNPIATINFV 314
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
+ K KP L TVEL + AS L + M+ AE LY +G++SYPRTET+++ E
Sbjct: 315 EKKATWKRKPLPLTTVELQKRASRWLRISSEETMKAAENLYNKGFISYPRTETSKFKEGT 374
Query: 344 DLVAVLRQQESSPDWGDHVREVL--SNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDA 400
DL+ +++ + WG +V E L N +PR G D HPPI PTK A L+ A
Sbjct: 375 DLINLIKLHSNHSSWGRYVTEELIQGNKYERPRNGTTDDEAHPPIHPTKAAELNSLNEMA 434
Query: 401 W-RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
++Y+ IV HF+ D Q + E FT + + + + N
Sbjct: 435 EKKVYELIVLHFLACCSKDAKGFQTNVTMQMHMEEFTTSGLMITERNYLEIYRFEKWSNS 494
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
SIP + + ++M +TTPP LTE++LI+ M+ +GIGTDA+I HI I +R
Sbjct: 495 SIPVYALREQFIPNCIRMESGETTPPSLLTEADLIAKMDSNGIGTDATIAEHIKTILKRE 554
Query: 520 Y-VTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
Y V + PT LG+ LV Y ++ +L +P +R+A
Sbjct: 555 YAVKINGNMHFKPTQLGLALVQAYVQMGFDLAKPRLRAA 593
>gi|325191461|emb|CCA26234.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2356
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 195/519 (37%), Positives = 281/519 (54%), Gaps = 17/519 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP--KLKLPAFLANEAKDCEFL 110
TSV GH+M L+FT Y W DP ELF+ P K+ + K+ L EA+ ++L
Sbjct: 78 FTSVIGHLMELNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWL 137
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
VLWLDCD+EGENI FEV N+NS ++RA+FSA+ DIK A+ NL N
Sbjct: 138 VLWLDCDREGENIAFEVKSICE---NVNSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNL 194
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL--DASLISYGPCQTPTLGFCVERHDKI 228
+ + DAR E+DLRIG AFTR+QT Q K+ + D +ISYGPCQ PTLGF VERH +I
Sbjct: 195 SLACDARSEIDLRIGAAFTRFQTMRLQQKFPGIQKDRGVISYGPCQFPTLGFVVERHLEI 254
Query: 229 RTFKPEPYWLLDLTLNLNG-----VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV 283
F E ++ + + + + + TW R ++D+ +C V ++ V + T+ V
Sbjct: 255 ENFVREEFYHIVVVHSPSEPLDKRASTKFTWKRQRLYDRLSCLVIYELVLQNPIATINFV 314
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
+ K KP L TVEL + AS L + M+ AE LY +G++SYPRTET+++ E
Sbjct: 315 EKKATWKRKPLPLTTVELQKRASRWLRISSEETMKAAENLYNKGFISYPRTETSKFKEGT 374
Query: 344 DLVAVLRQQESSPDWGDHVREVL--SNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDA 400
DL+ +++ + WG +V E L N +PR G D HPPI PTK A L+ A
Sbjct: 375 DLINLIKLHSNHSSWGRYVTEELIQGNKYERPRNGTTDDEAHPPIHPTKAAELNSLNEMA 434
Query: 401 W-RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
++Y+ IV HF+ D Q + E FT + + + + N
Sbjct: 435 EKKVYELIVLHFLACCSKDAKGFQTNVTMQMHMEEFTTSGLMITERNYLEIYRFEKWSNS 494
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
SIP + + ++M +TTPP LTE++LI+ M+ +GIGTDA+I HI I +R
Sbjct: 495 SIPVYALREQFIPNCIRMESGETTPPSLLTEADLIAKMDSNGIGTDATIAEHIKTILKRE 554
Query: 520 Y-VTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
Y V + PT LG+ LV Y ++ +L +P +R+A
Sbjct: 555 YAVKINGNMHFKPTQLGLALVQAYVQMGFDLAKPRLRAA 593
>gi|325191459|emb|CCA26232.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2392
Score = 332 bits (850), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 195/519 (37%), Positives = 281/519 (54%), Gaps = 17/519 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP--KLKLPAFLANEAKDCEFL 110
TSV GH+M L+FT Y W DP ELF+ P K+ + K+ L EA+ ++L
Sbjct: 78 FTSVIGHLMELNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWL 137
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
VLWLDCD+EGENI FEV N+NS ++RA+FSA+ DIK A+ NL N
Sbjct: 138 VLWLDCDREGENIAFEVKSICE---NVNSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNL 194
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL--DASLISYGPCQTPTLGFCVERHDKI 228
+ + DAR E+DLRIG AFTR+QT Q K+ + D +ISYGPCQ PTLGF VERH +I
Sbjct: 195 SLACDARSEIDLRIGAAFTRFQTMRLQQKFPGIQKDRGVISYGPCQFPTLGFVVERHLEI 254
Query: 229 RTFKPEPYWLLDLTLNLNG-----VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV 283
F E ++ + + + + + TW R ++D+ +C V ++ V + T+ V
Sbjct: 255 ENFVREEFYHIVVVHSPSEPLDKRASTKFTWKRQRLYDRLSCLVIYELVLQNPIATINFV 314
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
+ K KP L TVEL + AS L + M+ AE LY +G++SYPRTET+++ E
Sbjct: 315 EKKATWKRKPLPLTTVELQKRASRWLRISSEETMKAAENLYNKGFISYPRTETSKFKEGT 374
Query: 344 DLVAVLRQQESSPDWGDHVREVL--SNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDA 400
DL+ +++ + WG +V E L N +PR G D HPPI PTK A L+ A
Sbjct: 375 DLINLIKLHSNHSSWGRYVTEELIQGNKYERPRNGTTDDEAHPPIHPTKAAELNSLNEMA 434
Query: 401 W-RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
++Y+ IV HF+ D Q + E FT + + + + N
Sbjct: 435 EKKVYELIVLHFLACCSKDAKGFQTNVTMQMHMEEFTTSGLMITERNYLEIYRFEKWSNS 494
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
SIP + + ++M +TTPP LTE++LI+ M+ +GIGTDA+I HI I +R
Sbjct: 495 SIPVYALREQFIPNCIRMESGETTPPSLLTEADLIAKMDSNGIGTDATIAEHIKTILKRE 554
Query: 520 Y-VTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
Y V + PT LG+ LV Y ++ +L +P +R+A
Sbjct: 555 YAVKINGNMHFKPTQLGLALVQAYVQMGFDLAKPRLRAA 593
>gi|325191455|emb|CCA26228.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2390
Score = 331 bits (849), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 195/519 (37%), Positives = 281/519 (54%), Gaps = 17/519 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP--KLKLPAFLANEAKDCEFL 110
TSV GH+M L+FT Y W DP ELF+ P K+ + K+ L EA+ ++L
Sbjct: 78 FTSVIGHLMELNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWL 137
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
VLWLDCD+EGENI FEV N+NS ++RA+FSA+ DIK A+ NL N
Sbjct: 138 VLWLDCDREGENIAFEVKSICE---NVNSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNL 194
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL--DASLISYGPCQTPTLGFCVERHDKI 228
+ + DAR E+DLRIG AFTR+QT Q K+ + D +ISYGPCQ PTLGF VERH +I
Sbjct: 195 SLACDARSEIDLRIGAAFTRFQTMRLQQKFPGIQKDRGVISYGPCQFPTLGFVVERHLEI 254
Query: 229 RTFKPEPYWLLDLTLNLNG-----VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV 283
F E ++ + + + + + TW R ++D+ +C V ++ V + T+ V
Sbjct: 255 ENFVREEFYHIVVVHSPSEPLDKRASTKFTWKRQRLYDRLSCLVIYELVLQNPIATINFV 314
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
+ K KP L TVEL + AS L + M+ AE LY +G++SYPRTET+++ E
Sbjct: 315 EKKATWKRKPLPLTTVELQKRASRWLRISSEETMKAAENLYNKGFISYPRTETSKFKEGT 374
Query: 344 DLVAVLRQQESSPDWGDHVREVL--SNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDA 400
DL+ +++ + WG +V E L N +PR G D HPPI PTK A L+ A
Sbjct: 375 DLINLIKLHSNHSSWGRYVTEELIQGNKYERPRNGTTDDEAHPPIHPTKAAELNSLNEMA 434
Query: 401 W-RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
++Y+ IV HF+ D Q + E FT + + + + N
Sbjct: 435 EKKVYELIVLHFLACCSKDAKGFQTNVTMQMHMEEFTTSGLMITERNYLEIYRFEKWSNS 494
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
SIP + + ++M +TTPP LTE++LI+ M+ +GIGTDA+I HI I +R
Sbjct: 495 SIPVYALREQFIPNCIRMESGETTPPSLLTEADLIAKMDSNGIGTDATIAEHIKTILKRE 554
Query: 520 Y-VTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
Y V + PT LG+ LV Y ++ +L +P +R+A
Sbjct: 555 YAVKINGNMHFKPTQLGLALVQAYVQMGFDLAKPRLRAA 593
>gi|325191458|emb|CCA26231.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2417
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 195/519 (37%), Positives = 281/519 (54%), Gaps = 17/519 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP--KLKLPAFLANEAKDCEFL 110
TSV GH+M L+FT Y W DP ELF+ P K+ + K+ L EA+ ++L
Sbjct: 78 FTSVIGHLMELNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWL 137
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
VLWLDCD+EGENI FEV N+NS ++RA+FSA+ DIK A+ NL N
Sbjct: 138 VLWLDCDREGENIAFEVKSICE---NVNSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNL 194
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL--DASLISYGPCQTPTLGFCVERHDKI 228
+ + DAR E+DLRIG AFTR+QT Q K+ + D +ISYGPCQ PTLGF VERH +I
Sbjct: 195 SLACDARSEIDLRIGAAFTRFQTMRLQQKFPGIQKDRGVISYGPCQFPTLGFVVERHLEI 254
Query: 229 RTFKPEPYWLLDLTLNLNG-----VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV 283
F E ++ + + + + + TW R ++D+ +C V ++ V + T+ V
Sbjct: 255 ENFVREEFYHIVVVHSPSEPLDKRASTKFTWKRQRLYDRLSCLVIYELVLQNPIATINFV 314
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
+ K KP L TVEL + AS L + M+ AE LY +G++SYPRTET+++ E
Sbjct: 315 EKKATWKRKPLPLTTVELQKRASRWLRISSEETMKAAENLYNKGFISYPRTETSKFKEGT 374
Query: 344 DLVAVLRQQESSPDWGDHVREVL--SNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDA 400
DL+ +++ + WG +V E L N +PR G D HPPI PTK A L+ A
Sbjct: 375 DLINLIKLHSNHSSWGRYVTEELIQGNKYERPRNGTTDDEAHPPIHPTKAAELNSLNEMA 434
Query: 401 W-RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
++Y+ IV HF+ D Q + E FT + + + + N
Sbjct: 435 EKKVYELIVLHFLACCSKDAKGFQTNVTMQMHMEEFTTSGLMITERNYLEIYRFEKWSNS 494
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
SIP + + ++M +TTPP LTE++LI+ M+ +GIGTDA+I HI I +R
Sbjct: 495 SIPVYALREQFIPNCIRMESGETTPPSLLTEADLIAKMDSNGIGTDATIAEHIKTILKRE 554
Query: 520 Y-VTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
Y V + PT LG+ LV Y ++ +L +P +R+A
Sbjct: 555 YAVKINGNMHFKPTQLGLALVQAYVQMGFDLAKPRLRAA 593
>gi|325191452|emb|CCA26225.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2419
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 195/519 (37%), Positives = 281/519 (54%), Gaps = 17/519 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP--KLKLPAFLANEAKDCEFL 110
TSV GH+M L+FT Y W DP ELF+ P K+ + K+ L EA+ ++L
Sbjct: 78 FTSVIGHLMELNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWL 137
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
VLWLDCD+EGENI FEV N+NS ++RA+FSA+ DIK A+ NL N
Sbjct: 138 VLWLDCDREGENIAFEVKSICE---NVNSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNL 194
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL--DASLISYGPCQTPTLGFCVERHDKI 228
+ + DAR E+DLRIG AFTR+QT Q K+ + D +ISYGPCQ PTLGF VERH +I
Sbjct: 195 SLACDARSEIDLRIGAAFTRFQTMRLQQKFPGIQKDRGVISYGPCQFPTLGFVVERHLEI 254
Query: 229 RTFKPEPYWLLDLTLNLNG-----VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV 283
F E ++ + + + + + TW R ++D+ +C V ++ V + T+ V
Sbjct: 255 ENFVREEFYHIVVVHSPSEPLDKRASTKFTWKRQRLYDRLSCLVIYELVLQNPIATINFV 314
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
+ K KP L TVEL + AS L + M+ AE LY +G++SYPRTET+++ E
Sbjct: 315 EKKATWKRKPLPLTTVELQKRASRWLRISSEETMKAAENLYNKGFISYPRTETSKFKEGT 374
Query: 344 DLVAVLRQQESSPDWGDHVREVL--SNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDA 400
DL+ +++ + WG +V E L N +PR G D HPPI PTK A L+ A
Sbjct: 375 DLINLIKLHSNHSSWGRYVTEELIQGNKYERPRNGTTDDEAHPPIHPTKAAELNSLNEMA 434
Query: 401 W-RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
++Y+ IV HF+ D Q + E FT + + + + N
Sbjct: 435 EKKVYELIVLHFLACCSKDAKGFQTNVTMQMHMEEFTTSGLMITERNYLEIYRFEKWSNS 494
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
SIP + + ++M +TTPP LTE++LI+ M+ +GIGTDA+I HI I +R
Sbjct: 495 SIPVYALREQFIPNCIRMESGETTPPSLLTEADLIAKMDSNGIGTDATIAEHIKTILKRE 554
Query: 520 Y-VTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
Y V + PT LG+ LV Y ++ +L +P +R+A
Sbjct: 555 YAVKINGNMHFKPTQLGLALVQAYVQMGFDLAKPRLRAA 593
>gi|325191460|emb|CCA26233.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2385
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 195/519 (37%), Positives = 281/519 (54%), Gaps = 17/519 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP--KLKLPAFLANEAKDCEFL 110
TSV GH+M L+FT Y W DP ELF+ P K+ + K+ L EA+ ++L
Sbjct: 78 FTSVIGHLMELNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWL 137
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
VLWLDCD+EGENI FEV N+NS ++RA+FSA+ DIK A+ NL N
Sbjct: 138 VLWLDCDREGENIAFEVKSICE---NVNSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNL 194
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL--DASLISYGPCQTPTLGFCVERHDKI 228
+ + DAR E+DLRIG AFTR+QT Q K+ + D +ISYGPCQ PTLGF VERH +I
Sbjct: 195 SLACDARSEIDLRIGAAFTRFQTMRLQQKFPGIQKDRGVISYGPCQFPTLGFVVERHLEI 254
Query: 229 RTFKPEPYWLLDLTLNLNG-----VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV 283
F E ++ + + + + + TW R ++D+ +C V ++ V + T+ V
Sbjct: 255 ENFVREEFYHIVVVHSPSEPLDKRASTKFTWKRQRLYDRLSCLVIYELVLQNPIATINFV 314
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
+ K KP L TVEL + AS L + M+ AE LY +G++SYPRTET+++ E
Sbjct: 315 EKKATWKRKPLPLTTVELQKRASRWLRISSEETMKAAENLYNKGFISYPRTETSKFKEGT 374
Query: 344 DLVAVLRQQESSPDWGDHVREVL--SNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDA 400
DL+ +++ + WG +V E L N +PR G D HPPI PTK A L+ A
Sbjct: 375 DLINLIKLHSNHSSWGRYVTEELIQGNKYERPRNGTTDDEAHPPIHPTKAAELNSLNEMA 434
Query: 401 W-RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
++Y+ IV HF+ D Q + E FT + + + + N
Sbjct: 435 EKKVYELIVLHFLACCSKDAKGFQTNVTMQMHMEEFTTSGLMITERNYLEIYRFEKWSNS 494
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
SIP + + ++M +TTPP LTE++LI+ M+ +GIGTDA+I HI I +R
Sbjct: 495 SIPVYALREQFIPNCIRMESGETTPPSLLTEADLIAKMDSNGIGTDATIAEHIKTILKRE 554
Query: 520 Y-VTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
Y V + PT LG+ LV Y ++ +L +P +R+A
Sbjct: 555 YAVKINGNMHFKPTQLGLALVQAYVQMGFDLAKPRLRAA 593
>gi|325191456|emb|CCA26229.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2387
Score = 331 bits (848), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 195/519 (37%), Positives = 281/519 (54%), Gaps = 17/519 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP--KLKLPAFLANEAKDCEFL 110
TSV GH+M L+FT Y W DP ELF+ P K+ + K+ L EA+ ++L
Sbjct: 78 FTSVIGHLMELNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWL 137
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
VLWLDCD+EGENI FEV N+NS ++RA+FSA+ DIK A+ NL N
Sbjct: 138 VLWLDCDREGENIAFEVKSICE---NVNSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNL 194
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL--DASLISYGPCQTPTLGFCVERHDKI 228
+ + DAR E+DLRIG AFTR+QT Q K+ + D +ISYGPCQ PTLGF VERH +I
Sbjct: 195 SLACDARSEIDLRIGAAFTRFQTMRLQQKFPGIQKDRGVISYGPCQFPTLGFVVERHLEI 254
Query: 229 RTFKPEPYWLLDLTLNLNG-----VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV 283
F E ++ + + + + + TW R ++D+ +C V ++ V + T+ V
Sbjct: 255 ENFVREEFYHIVVVHSPSEPLDKRASTKFTWKRQRLYDRLSCLVIYELVLQNPIATINFV 314
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
+ K KP L TVEL + AS L + M+ AE LY +G++SYPRTET+++ E
Sbjct: 315 EKKATWKRKPLPLTTVELQKRASRWLRISSEETMKAAENLYNKGFISYPRTETSKFKEGT 374
Query: 344 DLVAVLRQQESSPDWGDHVREVL--SNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDA 400
DL+ +++ + WG +V E L N +PR G D HPPI PTK A L+ A
Sbjct: 375 DLINLIKLHSNHSSWGRYVTEELIQGNKYERPRNGTTDDEAHPPIHPTKAAELNSLNEMA 434
Query: 401 W-RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
++Y+ IV HF+ D Q + E FT + + + + N
Sbjct: 435 EKKVYELIVLHFLACCSKDAKGFQTNVTMQMHMEEFTTSGLMITERNYLEIYRFEKWSNS 494
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
SIP + + ++M +TTPP LTE++LI+ M+ +GIGTDA+I HI I +R
Sbjct: 495 SIPVYALREQFIPNCIRMESGETTPPSLLTEADLIAKMDSNGIGTDATIAEHIKTILKRE 554
Query: 520 Y-VTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
Y V + PT LG+ LV Y ++ +L +P +R+A
Sbjct: 555 YAVKINGNMHFKPTQLGLALVQAYVQMGFDLAKPRLRAA 593
>gi|358057730|dbj|GAA96385.1| hypothetical protein E5Q_03052 [Mixia osmundae IAM 14324]
Length = 882
Score = 331 bits (848), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 188/520 (36%), Positives = 281/520 (54%), Gaps = 17/520 (3%)
Query: 43 PLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK-LPAFLA 101
P F D V+ T+V GH+ DF + W D +LF P PKLK + L
Sbjct: 49 PGFTDFVV---TAVVGHLTANDFDDAHRGWRSCDAFDLFDAPIITF-IPPKLKDVARNLQ 104
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMW 161
NEA+ + L++W DCD+EGE+I +EV + +N V RARFSAI I A
Sbjct: 105 NEARTAQILMIWTDCDREGEHIGWEVQNVC---LKVNPRLVVLRARFSAIIANQIHQACQ 161
Query: 162 NLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
+ V + +A +V+AR LDLR+G A TR QT FQ + +L S+ISYGPCQ P LGF
Sbjct: 162 HAVALDERQASAVEARIMLDLRVGAALTRLQTFNFQAAFPELQGSVISYGPCQFPALGFV 221
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV 281
VE+++++R F E +W + TL +G V+ W+R +FD+ + + + T+
Sbjct: 222 VEQYERMRNFVAEAFWSIQSTLRRDGATVTFNWARNRLFDREVAGMLHQWCLDDPEATIT 281
Query: 282 DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPE 341
VQ+ SK KP L TVEL + S L + P ++IA+ LY +G +SYPRTET Q+
Sbjct: 282 SVQTKPASKWKPLPLTTVELQKSGSRILRLSPKKVLEIADALYQRGILSYPRTETDQFDP 341
Query: 342 NFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDA 400
+F+ ++ +Q WG + + +PR G K+ HPPI PT A L GD
Sbjct: 342 HFNFQELIEKQTQDTRWGPFAQRLHRGEFERPRGGRKNDHAHPPIHPTAHAN---LQGDE 398
Query: 401 WRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES 460
R+Y+ + R F+ + Q + S+A E F +L + V + + +
Sbjct: 399 ARVYELVTRRFLACCHKNATGRQTTVRVSIAREEFNASGLIVLERNYLDVYPYDRWEGNA 458
Query: 461 IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNY 520
+PDF + + ++ E KTT P LTE++L++LM+K+GIGTDA+I HI ++ +R+Y
Sbjct: 459 LPDFHLNETFLPATCELKEGKTTGPSLLTEADLVNLMDKNGIGTDATIAEHIEHLLERDY 518
Query: 521 VTVTSGRR---LVPTSLGIVLVHGYQK--IDRELVEPTMR 555
++ R LVPT+LGI LV GY + +D L +P +R
Sbjct: 519 ISREKDGRSTVLVPTTLGIGLVEGYNRLGLDNSLSKPHLR 558
>gi|169775139|ref|XP_001822037.1| DNA topoisomerase 3 [Aspergillus oryzae RIB40]
gi|238496239|ref|XP_002379355.1| DNA topoisomerase III, putative [Aspergillus flavus NRRL3357]
gi|83769900|dbj|BAE60035.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694235|gb|EED50579.1| DNA topoisomerase III, putative [Aspergillus flavus NRRL3357]
gi|391872962|gb|EIT82037.1| DNA topoisomerase III alpha [Aspergillus oryzae 3.042]
Length = 629
Score = 331 bits (848), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 183/502 (36%), Positives = 270/502 (53%), Gaps = 12/502 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ L+F +Y W P LF P + K + + +AK C+ L +
Sbjct: 59 MTSVIGHLTTLEFERQYKGWLSCPPGALFEAPVHITVDSDKAAIAKNIQEQAKYCKALFI 118
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I EV + + N+ V RA+FS + A +L++ + +A
Sbjct: 119 WTDCDREGEHIGTEVRKQAKEG---NARIVVKRAKFSNTEKAHVLNAARSLIELDDLQAN 175
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V AR ELDLRIG AFTR QT + L +ISYG CQ PTLGF V+R+ +++ FK
Sbjct: 176 AVAARIELDLRIGAAFTRLQTLQLKHISEALSEKIISYGSCQFPTLGFVVDRYLRVKNFK 235
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE +W + + +G+ V+ W R H+FD++ V + K V V SK +
Sbjct: 236 PENFWGIKVMHTRDGIKVNFLWRRVHLFDRAAVTVMLERCLMAKKAKVTKVNQKPTSKWR 295
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TV+L + S L M M++AE LYT+G++SYPRTET Q+ + DL ++ +Q
Sbjct: 296 PLPLTTVDLQMMGSRYLRMDSQKIMKVAEALYTKGFISYPRTETDQFDKGIDLKKLIEKQ 355
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
+WG + R +L G PR G+ + HPPI P + T L D ++Y+++VR F
Sbjct: 356 FPDTNWGQYARGLLDGGYRTPRAGRHNDQAHPPIHPICWVSPTALSADEKKVYEFVVRRF 415
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLI 470
+ D + DEMF + +L + V + + ++ +P+F+ G+L
Sbjct: 416 LACCSEDAKGQTSEVEIQYGDEMFHAKGLIVLERNYLDVYVYDKWESSQQLPNFQMGELF 475
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV---TSGR 527
K+ + KTTPP+YLTE ELI LM+ +GIGTDA++ HI I +R YV V SGR
Sbjct: 476 EPTEAKIFDGKTTPPNYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVAVHSRGSGR 535
Query: 528 ----RLVPTSLGIVLVHGYQKI 545
L+PT LG+ LV GY +
Sbjct: 536 NAVKELIPTRLGVALVEGYDNV 557
>gi|325191454|emb|CCA26227.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2412
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 195/519 (37%), Positives = 281/519 (54%), Gaps = 17/519 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP--KLKLPAFLANEAKDCEFL 110
TSV GH+M L+FT Y W DP ELF+ P K+ + K+ L EA+ ++L
Sbjct: 78 FTSVIGHLMELNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWL 137
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
VLWLDCD+EGENI FEV N+NS ++RA+FSA+ DIK A+ NL N
Sbjct: 138 VLWLDCDREGENIAFEVKSICE---NVNSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNL 194
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL--DASLISYGPCQTPTLGFCVERHDKI 228
+ + DAR E+DLRIG AFTR+QT Q K+ + D +ISYGPCQ PTLGF VERH +I
Sbjct: 195 SLACDARSEIDLRIGAAFTRFQTMRLQQKFPGIQKDRGVISYGPCQFPTLGFVVERHLEI 254
Query: 229 RTFKPEPYWLLDLTLNLNG-----VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV 283
F E ++ + + + + + TW R ++D+ +C V ++ V + T+ V
Sbjct: 255 ENFVREEFYHIVVVHSPSEPLDKRASTKFTWKRQRLYDRLSCLVIYELVLQNPIATINFV 314
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
+ K KP L TVEL + AS L + M+ AE LY +G++SYPRTET+++ E
Sbjct: 315 EKKATWKRKPLPLTTVELQKRASRWLRISSEETMKAAENLYNKGFISYPRTETSKFKEGT 374
Query: 344 DLVAVLRQQESSPDWGDHVREVL--SNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDA 400
DL+ +++ + WG +V E L N +PR G D HPPI PTK A L+ A
Sbjct: 375 DLINLIKLHSNHSSWGRYVTEELIQGNKYERPRNGTTDDEAHPPIHPTKAAELNSLNEMA 434
Query: 401 W-RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
++Y+ IV HF+ D Q + E FT + + + + N
Sbjct: 435 EKKVYELIVLHFLACCSKDAKGFQTNVTMQMHMEEFTTSGLMITERNYLEIYRFEKWSNS 494
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
SIP + + ++M +TTPP LTE++LI+ M+ +GIGTDA+I HI I +R
Sbjct: 495 SIPVYALREQFIPNCIRMESGETTPPSLLTEADLIAKMDSNGIGTDATIAEHIKTILKRE 554
Query: 520 Y-VTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
Y V + PT LG+ LV Y ++ +L +P +R+A
Sbjct: 555 YAVKINGNMHFKPTQLGLALVQAYVQMGFDLAKPRLRAA 593
>gi|325191453|emb|CCA26226.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2414
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 195/519 (37%), Positives = 281/519 (54%), Gaps = 17/519 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP--KLKLPAFLANEAKDCEFL 110
TSV GH+M L+FT Y W DP ELF+ P K+ + K+ L EA+ ++L
Sbjct: 78 FTSVIGHLMELNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWL 137
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
VLWLDCD+EGENI FEV N+NS ++RA+FSA+ DIK A+ NL N
Sbjct: 138 VLWLDCDREGENIAFEVKSICE---NVNSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNL 194
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL--DASLISYGPCQTPTLGFCVERHDKI 228
+ + DAR E+DLRIG AFTR+QT Q K+ + D +ISYGPCQ PTLGF VERH +I
Sbjct: 195 SLACDARSEIDLRIGAAFTRFQTMRLQQKFPGIQKDRGVISYGPCQFPTLGFVVERHLEI 254
Query: 229 RTFKPEPYWLLDLTLNLNG-----VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV 283
F E ++ + + + + + TW R ++D+ +C V ++ V + T+ V
Sbjct: 255 ENFVREEFYHIVVVHSPSEPLDKRASTKFTWKRQRLYDRLSCLVIYELVLQNPIATINFV 314
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
+ K KP L TVEL + AS L + M+ AE LY +G++SYPRTET+++ E
Sbjct: 315 EKKATWKRKPLPLTTVELQKRASRWLRISSEETMKAAENLYNKGFISYPRTETSKFKEGT 374
Query: 344 DLVAVLRQQESSPDWGDHVREVL--SNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDA 400
DL+ +++ + WG +V E L N +PR G D HPPI PTK A L+ A
Sbjct: 375 DLINLIKLHSNHSSWGRYVTEELIQGNKYERPRNGTTDDEAHPPIHPTKAAELNSLNEMA 434
Query: 401 W-RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
++Y+ IV HF+ D Q + E FT + + + + N
Sbjct: 435 EKKVYELIVLHFLACCSKDAKGFQTNVTMQMHMEEFTTSGLMITERNYLEIYRFEKWSNS 494
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
SIP + + ++M +TTPP LTE++LI+ M+ +GIGTDA+I HI I +R
Sbjct: 495 SIPVYALREQFIPNCIRMESGETTPPSLLTEADLIAKMDSNGIGTDATIAEHIKTILKRE 554
Query: 520 Y-VTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
Y V + PT LG+ LV Y ++ +L +P +R+A
Sbjct: 555 YAVKINGNMHFKPTQLGLALVQAYVQMGFDLAKPRLRAA 593
>gi|398398505|ref|XP_003852710.1| DNA topoisomerase 3 [Zymoseptoria tritici IPO323]
gi|339472591|gb|EGP87686.1| hypothetical protein MYCGRDRAFT_71866 [Zymoseptoria tritici IPO323]
Length = 636
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 190/520 (36%), Positives = 270/520 (51%), Gaps = 17/520 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+M DF +Y W DP LF C E + + A + N+A+ +L +
Sbjct: 57 MTSVAGHLMSHDFPREYKGWQSCDPSALFECRIESYIDNERKAIAANIENQAQYARYLYI 116
Query: 113 WLDCDKEGENICFEVME-AVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE I E+ + A + + +P RARFS I I AA + + +A
Sbjct: 117 WTDCDREGEAIGSEIRDVACKKNAYLRNPGKTVRARFSNIERAHIIAAARAPIPLDEAQA 176
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V +R ELDLR+G AFTR + Q + S+ISYG CQ PTLGF VER+ +++ F
Sbjct: 177 AAVASRIELDLRVGVAFTRNLSLTLQAMIPGREGSVISYGSCQFPTLGFVVERYFRVKNF 236
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
PE +W + + + V V+ WSRGH+FD+ + F+ + V V SK
Sbjct: 237 LPETFWGIKVMHEKDRVKVNFHWSRGHLFDRMVVTILFERCLTARTARVTKVTKKPTSKW 296
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
KP L TVEL + S L M MQIAE+LY G++SYPRTET Q+ N DL ++ +
Sbjct: 297 KPLPLTTVELQKCGSRFLRMNSQRVMQIAEKLYQDGFISYPRTETDQFDRNTDLNTIIDK 356
Query: 352 QESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVRH 410
Q SPDWG+ + + + G S PR G++ HPPI P LD + R+Y++IVR
Sbjct: 357 QIQSPDWGNFAQGLRNGGFSWPRMGRNNDKAHPPIHPVNFVANNALDHEHRRVYEFIVRR 416
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSA-MKNESIPDFKPGDL 469
F+ D T+ E F +L + V + ++ +P F G+
Sbjct: 417 FLACCSKDAQGTKTDIGILYGAETFNASGLMVLERNYLDVYPYDKWTSSQELPIFAVGET 476
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT-SGR- 527
+M E +TTPP YLTE ELI LM+ +GIGTDA++ HI I +R YV GR
Sbjct: 477 FVPTEARMHEGETTPPGYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVMARPRGRV 536
Query: 528 ----------RLVPTSLGIVLVHGYQKIDRE--LVEPTMR 555
+PT+LG+ L+ GY+ + E L +P +R
Sbjct: 537 QPQAGNGGVQEFIPTTLGVALIEGYESMGFEISLAKPFLR 576
>gi|170093393|ref|XP_001877918.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647777|gb|EDR12021.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 716
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 182/506 (35%), Positives = 273/506 (53%), Gaps = 14/506 (2%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
F +T V GH+ DF + W+ DP LF P E K + L E + L
Sbjct: 49 FTVTCVSGHLTSQDFGEAHRKWNSCDPFALFDAPVETLIPPDKKSIERNLRTEGGRADTL 108
Query: 111 VLWLDCDKEGENICFEVMEAVRH-QININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
++W DCD+EGE+I E+ R + NI V RARFSAI + I A + ++ +
Sbjct: 109 MIWTDCDREGEHIGMEIARVCRKAKPNI----VVKRARFSAIIAQQIHHAAQHPIELDRA 164
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
+A +V+AR LDL++G AFTR QT Q ++ L+ ++SYGPCQ PTLGF V+R+++++
Sbjct: 165 QAEAVEARILLDLKVGAAFTRMQTLALQRQFAQLEG-VLSYGPCQFPTLGFVVQRYNRVK 223
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKS 289
F+PE +W + L+L +G TW GH+FD+ ++ V + V+ V
Sbjct: 224 AFRPETFWYIYLSLTRDGEETKFTWKEGHLFDQGGAARIYEIVLQNPRARVIRVTKKDTK 283
Query: 290 KTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL 349
K KP L TVEL + S L + P + +AE+LY QG+VSYPRTET Q+ FD + ++
Sbjct: 284 KWKPLPLTTVELQKAGSRLLKLAPKKVLDVAEKLYQQGFVSYPRTETDQFDPQFDFMTLI 343
Query: 350 RQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIV 408
+Q P WG+ R + G PRKGK+ HPPI PT A L GD ++Y+YI
Sbjct: 344 GKQTVDPAWGEFARTYQNGGFGVPRKGKNNDKAHPPIHPTAHA--GNLVGDEKKVYEYIT 401
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMF--TMEAKYLLHPGFTGVMTWSAMKNESIPDFKP 466
R F+ D +Q + E F +L + V + ++P+F+
Sbjct: 402 RRFLACCSKDAEGSQTTVEVVCGGEDFYPLPLGLIVLQRNYLEVYPYDKWIGHTVPNFQE 461
Query: 467 GDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT-- 524
G+ ++ E +T+ P+YLTE++L++LM+K+GIGTDA+I HI I R YV
Sbjct: 462 GEEFDPSVCELREGQTSKPNYLTEADLVTLMDKNGIGTDATIAQHIQTIVDREYVVERME 521
Query: 525 -SGRRLVPTSLGIVLVHGYQKIDREL 549
+ + LVP++LGI L+ GY +I +
Sbjct: 522 GAIKYLVPSTLGIGLIDGYNEIGKSF 547
>gi|145238250|ref|XP_001391772.1| DNA topoisomerase 3 [Aspergillus niger CBS 513.88]
gi|134076254|emb|CAK39540.1| unnamed protein product [Aspergillus niger]
Length = 629
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 181/502 (36%), Positives = 268/502 (53%), Gaps = 12/502 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ GLDF +Y W P LF P + A K+ + + +A+ C+ L +
Sbjct: 59 MTSVIGHLTGLDFERQYRTWLSCPPSALFEAPVHESVADDKVAIAKNIQEQARRCKALFI 118
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I E+ + + NS V RARFS + A +L++ + +A
Sbjct: 119 WTDCDREGEHIGTEIRKQAKEG---NSRIVVKRARFSNTEKAHVLHAARSLIELDDLQAN 175
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V AR ELDLRIG AFTR QT + L ++ISYG CQ PTLGF V+R+ +++ FK
Sbjct: 176 AVAARIELDLRIGAAFTRLQTLQLKPLSAALQDTIISYGSCQFPTLGFVVDRYLRVKNFK 235
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE +W + + + + V+ W R H+FD+ V + K V V SK +
Sbjct: 236 PETFWGIKVMHTRDDIKVNFLWKRVHLFDRVAVTVMLERCLMAKKAKVTKVTQKPTSKWR 295
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TV+L + S L M M++AE LYT+G++SYPRTET Q+ + DL ++ Q
Sbjct: 296 PLPLTTVDLQMMGSRYLRMDSQTIMKVAEALYTKGFISYPRTETDQFDKGIDLKKLVETQ 355
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
+WG + R +L PR G+ + HPPI P T L D ++Y+++VR F
Sbjct: 356 LPDGNWGQYARHLLDGAFKTPRSGRHNDQAHPPIHPICWVAPTALTADEKKVYEFVVRRF 415
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLI 470
+ D + DE F + +L + V + + ++ +P+++ G++
Sbjct: 416 LACCSEDAKGQSTEIEIQYGDEFFHAKGLLVLERNYLDVYVYDKWESSQQLPNYQMGEMF 475
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV---TSGR 527
K+ + KT+PP+YLTE ELI LM+ +GIGTDA++ HI I +R YV V SGR
Sbjct: 476 EPTEAKIFDGKTSPPNYLTEPELIGLMDANGIGTDATMAEHIAKIKERQYVAVHSRGSGR 535
Query: 528 ----RLVPTSLGIVLVHGYQKI 545
L+PT LGI LV GY +
Sbjct: 536 NAVKELIPTRLGIALVEGYDNV 557
>gi|350635779|gb|EHA24140.1| hypothetical protein ASPNIDRAFT_48367 [Aspergillus niger ATCC 1015]
Length = 629
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 180/502 (35%), Positives = 269/502 (53%), Gaps = 12/502 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ GLDF +Y W P LF P + A K+ + + +A+ C+ L +
Sbjct: 59 MTSVIGHLTGLDFERQYRTWLSCPPSALFEAPVHESVADDKVAIAKNIQEQARRCKALFI 118
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I E+ + + NS V RARFS + A +L++ + +A
Sbjct: 119 WTDCDREGEHIGTEIRKQAKEG---NSRIVVKRARFSNTEKAHVLHAARSLIELDDLQAN 175
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V AR ELDLRIG AFTR QT + L ++ISYG CQ PTLGF V+R+ +++ FK
Sbjct: 176 AVAARIELDLRIGAAFTRLQTLQLKPLSAALQDTIISYGSCQFPTLGFVVDRYLRVKNFK 235
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE +W + + + + V+ W R H+FD++ V + K V V SK +
Sbjct: 236 PETFWGIKVMHTRDDIKVNFLWKRVHLFDRAAVTVMLERCLMAKKAKVTKVTQKPTSKWR 295
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TV+L + S L M M++AE LYT+G++SYPRTET Q+ + DL ++ +Q
Sbjct: 296 PLPLTTVDLQMMGSRYLRMDSQTIMKVAEALYTKGFISYPRTETDQFDKGIDLKKLVEKQ 355
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
+WG + R +L PR G+ + HPPI P T L D ++Y+++VR F
Sbjct: 356 LPDGNWGQYARHLLDGAFKTPRSGRHNDQAHPPIHPICWVAPTALTADEKKVYEFVVRRF 415
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLI 470
+ D + DE + +L + V + + ++ +P+++ G++
Sbjct: 416 LACCSEDAKGQSTEIEIQYGDEFLHAKGLLVLERNYLDVYVYDKWESSQQLPNYQMGEMF 475
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV---TSGR 527
K+ + KT+PP+YLTE ELI LM+ +GIGTDA++ HI I +R YV V SGR
Sbjct: 476 EPTEAKIFDGKTSPPNYLTEPELIGLMDANGIGTDATMAEHIAKIKERQYVAVHSRGSGR 535
Query: 528 ----RLVPTSLGIVLVHGYQKI 545
L+PT LGI LV GY +
Sbjct: 536 NAVKELIPTRLGIALVEGYDNV 557
>gi|353239154|emb|CCA71076.1| related to DNA topoisomerase III alpha [Piriformospora indica DSM
11827]
Length = 632
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 190/520 (36%), Positives = 278/520 (53%), Gaps = 20/520 (3%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
F +T V GHI LDF + W+ DP LF P E + +L + A+ + L
Sbjct: 18 FTVTYVAGHITELDFPETHRKWNSCDPFTLFDAPVEVKHPQRVNELVRNIEIRARGSDML 77
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
++W DCD+EGE I +E+ + + +N + RARFSAI I A N ++ +
Sbjct: 78 MIWTDCDREGEYIGYEIAQVCQ---KVNRRIKIKRARFSAIIADQIHRAAQNPTNLDLAQ 134
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL-DASLISYGPCQTPTLGFCVERHDKIR 229
A +V ARQ LDLR+G AFTR Q Q ++G+L + L+SYGPCQ PTLGF V R+++++
Sbjct: 135 ADAVIARQMLDLRLGAAFTRMQCMALQNRFGNLLEGKLVSYGPCQFPTLGFVVSRYEQVK 194
Query: 230 TFKPEPYWLLDLTLNLNGVA--------VSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV 281
F PE +W + L LN G W RGH+FD + ++ V + TV
Sbjct: 195 AFVPETFWYIYLALNRPGEQNGRGREDQTVFKWKRGHLFDFDVALMLYEMVLERPMATVK 254
Query: 282 DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPE 341
V K KP L TV+L + S L M + A+ LY +G +SYPRTET QY +
Sbjct: 255 KVVKKNTKKWKPYPLTTVDLQKSGSRLLRMSAKQILDTADALYQRGILSYPRTETDQYDD 314
Query: 342 NFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDA 400
FD +++Q SSP+WG + SKPRKG K+ HPPI PT A L G+
Sbjct: 315 QFDFGQYIQKQTSSPEWGAFATRLRQGEFSKPRKGKKNDKAHPPIHPTAYA--GNLAGNE 372
Query: 401 WRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES 460
++Y+Y+ R F+ + D Q +V E F+ +L + V + +
Sbjct: 373 KKVYEYVTRRFLASCSKDAEGFQTTITVAVNGEEFSASGLLVLERNYLEVFPYDKWSSHE 432
Query: 461 IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNY 520
+P F+ G+ ++ E +TT P LTE++L+SLM+K+GIGTDA+I HIN I +R Y
Sbjct: 433 LPPFEEGEEFMPTICELREGETTRPSLLTEADLVSLMDKNGIGTDATIAQHINTIVEREY 492
Query: 521 VTVT---SGRRLVPTSLGIVLVHGYQKI--DRELVEPTMR 555
V + + LVP++LG+ LVHGY +I ++ L +P +R
Sbjct: 493 VMERLEGNTKYLVPSTLGVGLVHGYNQIGLEKSLSKPQLR 532
>gi|255943201|ref|XP_002562369.1| Pc18g05420 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587102|emb|CAP94766.1| Pc18g05420 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 628
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 180/503 (35%), Positives = 269/503 (53%), Gaps = 14/503 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ GLDF +Y W P LF P ++ KL + + N+AK + L +
Sbjct: 58 MTSVVGHLTGLDFDREYKGWMSCPPGALFEAPVQETVDKDKLPIADNIRNQAKYSKALFI 117
Query: 113 WLDCDKEGENICFEVMEAVRHQINI-NSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I EV R+Q N+ V RA+FS ++ A V + ++A
Sbjct: 118 WTDCDREGEHIGSEV----RNQAKAGNAQIEVKRAKFSNTESAHVRRAALEPVNLDEYQA 173
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V AR ELDLRIG AFTR QT Q L +ISYG CQ PTLGF V+R+ +++ F
Sbjct: 174 SAVAARIELDLRIGAAFTRLQTLQLQTVVAALKEKVISYGSCQFPTLGFVVDRYLRVQNF 233
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
KPE +W + + L+ G V+ W R H+FD++ + + K V V SK
Sbjct: 234 KPETFWGIKVILSREGKKVNFLWKRVHLFDRAVVTMMLERCLLAKQAKVTKVNQKPTSKW 293
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
+P L TV+L + S L + M++AE LYT+G++SYPRTET Q+ + DL ++ +
Sbjct: 294 RPLPLTTVDLQMMGSRFLRLDSQTIMKVAEALYTKGFISYPRTETDQFDKGIDLKKLVEK 353
Query: 352 QESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRH 410
Q WG + RE++ PR G+ + HPPI P + QL+ + ++Y+++VR
Sbjct: 354 QYPDNSWGQYARELIDGKFRTPRSGRHNDKAHPPIHPVSWVSPNQLNANEKKVYEFVVRR 413
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDL 469
F+ D + DE F +L + V + + ++ +P+F+ G+L
Sbjct: 414 FLACCSDDAKGQSTEIEIQYGDEFFHTNGLIVLERNYLDVYVYDKWESSQQLPNFERGEL 473
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV------ 523
+ + KTTPP+YLTE ELI LM+ +GIGTDA++ HI I +R YV +
Sbjct: 474 FEPTEANIFDGKTTPPNYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVAINQRGGG 533
Query: 524 -TSGRRLVPTSLGIVLVHGYQKI 545
+S + +PT LG+ LV GY +
Sbjct: 534 RSSVQEFIPTRLGVALVEGYDNV 556
>gi|121710650|ref|XP_001272941.1| DNA topoisomerase III, putative [Aspergillus clavatus NRRL 1]
gi|119401091|gb|EAW11515.1| DNA topoisomerase III, putative [Aspergillus clavatus NRRL 1]
Length = 629
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 185/502 (36%), Positives = 265/502 (52%), Gaps = 12/502 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+M LDF S+Y W P LF P + T K + + ++A+ + L +
Sbjct: 59 MTSVLGHLMALDFESQYKGWQSCPPGSLFEAPVHEYVETDKQPIAENIRDQARASKALFI 118
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I EV + N V RARFS + A L+ + +A
Sbjct: 119 WTDCDREGEHIGTEVRLQAKKG---NGRILVKRARFSNTERAHVLRAARALIDVDENQAN 175
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V AR ELDLRIG AFTR Q + L +ISYG CQ PTLGF V+R+ +++ FK
Sbjct: 176 AVAARIELDLRIGAAFTRLQCLQLKPLSAALTDKIISYGSCQFPTLGFVVDRYLRVKNFK 235
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE +W + + G+ V+ W R H+FD++ V + K V V SK +
Sbjct: 236 PETFWGIKVMHVQEGMKVNFLWRRVHLFDRAVVTVMMERCLLAKKAKVTKVNQKPTSKWR 295
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TV+L + S L M M+IAE LYT+G++SYPRTET Q+ + DL ++ +Q
Sbjct: 296 PLPLTTVDLQMMGSRYLRMDSQKVMRIAEALYTKGFISYPRTETDQFDKGIDLKKLIEKQ 355
Query: 353 ESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
+WGD+ R +++ PR GK+ HPPI P + + L D ++Y+++VR F
Sbjct: 356 FPDGNWGDYARGLINGAFKTPRSGKNNDQAHPPIHPVCWVSPSALSADEKKVYEFVVRRF 415
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLI 470
+ D + +EMF +L + V + + ++ +P+F+ G+L
Sbjct: 416 LACCSDDAKGQATEVEIQYGEEMFHANGLIVLEKNYLEVYVYDKWESSQELPNFRDGELF 475
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV---TSGR 527
K+ E KTTPP+YLTE ELI LM+ +GIGTDA++ HI I R YV V SGR
Sbjct: 476 EPTEAKIFEGKTTPPNYLTEPELIGLMDANGIGTDATMAEHIAKIKDREYVAVHSRGSGR 535
Query: 528 ----RLVPTSLGIVLVHGYQKI 545
+PT LGI LV GY +
Sbjct: 536 NAVKEFIPTRLGIALVEGYDNV 557
>gi|388853372|emb|CCF52992.1| related to DNA topoisomerase III alpha [Ustilago hordei]
Length = 986
Score = 328 bits (840), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 203/543 (37%), Positives = 295/543 (54%), Gaps = 31/543 (5%)
Query: 43 PLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLAN 102
P +V MTSV GH+ DF ++ W P LF P + + L
Sbjct: 45 PDVQGMVDMTMTSVRGHLTEADFGPQHKGWRSCQPSHLFEAPIITGLSNDAKSIGQNLRM 104
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRH-QININSPKTVWRARFSAITDKDIKAAMW 161
EA++ + +++W DCD+EGE+I E++E VR + NI V RARFSAI D I AA
Sbjct: 105 EARNADAVMIWTDCDREGEHIGSEIVEEVRKVRRNIR----VMRARFSAIIDSQIHAACQ 160
Query: 162 NLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL-DAS-LISYGPCQTPTLG 219
N V+ + A +V++R +LDLRIG AFTR QT Q + L DAS +ISYGPCQ PTLG
Sbjct: 161 NTVELDWRAADAVESRIQLDLRIGAAFTRMQTMALQNRMPALRDASQVISYGPCQFPTLG 220
Query: 220 FCVERHDKIRTFKPEPYWLL--DLTLNLNG------------VAVSVTWSRGHIFDKSTC 265
F V+R++K+ F E +W L D T +++G V+ W R H+FDK
Sbjct: 221 FVVDRYNKVVHFVAEAFWYLQVDKTRSMSGGDPSPDDPPDQICKVTFNWDRVHLFDKKAV 280
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
VF ++ TV +V + K KP L TVEL + S L + P + IAE LY
Sbjct: 281 EVFRDLCRAKREGTVENVTNKQTKKWKPYPLTTVELQKSGSRLLRLAPKRILDIAESLYQ 340
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPP 384
+G++SYPRTET QY ++FD ++ +Q + W + +L +PR GK+ HPP
Sbjct: 341 KGFLSYPRTETDQYDKDFDFNTLIAKQTADGAWSGIAQRLLDGAFERPRNGKNNDKAHPP 400
Query: 385 ITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLH 444
I PT A L GD R+YDY+ R F+ + D + +Q +A E F +L
Sbjct: 401 IHPTAHA--GGLSGDDKRVYDYVTRRFLASCWSDAIGSQTTVAIDIAGEKFHASGLVILQ 458
Query: 445 PGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGT 504
+ V T+ + +P F G+ + ++M + T+PP LTE++L++LM+K+GIGT
Sbjct: 459 RNYLEVFTYDKWEGNLLPPFVRGERLTPTRLEMKQGCTSPPKLLTEADLVNLMDKNGIGT 518
Query: 505 DASIPVHINNICQRNYV-TVTSGRR--LVPTSLGIVLVHGYQKIDRE--LVEPTMR--SA 557
DA+I HI + +R YV V G+ LVP++LGI LV GY +++ E L +P +R +
Sbjct: 519 DATIAEHIAKVIERQYVMQVKEGKTNYLVPSTLGIGLVEGYNQLNLEKSLSKPLLRRETE 578
Query: 558 YRV 560
YR+
Sbjct: 579 YRM 581
>gi|145345003|ref|XP_001417013.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577239|gb|ABO95306.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 641
Score = 327 bits (839), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 187/528 (35%), Positives = 274/528 (51%), Gaps = 32/528 (6%)
Query: 46 GDLVLFKMTSVCGHIMGLDFTS-KYNNWDKVDPLELF-SCPTEKREATPKLKLPAFLANE 103
G V TSV GH+ +F ++ W+ VDP EL + KR K ++ + E
Sbjct: 57 GRRVTMVFTSVTGHLSNFEFADDRHRRWNGVDPRELLVNAAVAKRVPEDKRQVADNVKRE 116
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
A+ C+ ++LWLDCD+EGENI FEV+ A R N +RARFSA++ D A+ NL
Sbjct: 117 ARGCDSVILWLDCDREGENIAFEVLAACRE---ANRGIAAFRARFSALSRGDADRALTNL 173
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGK-----YGDLDASLISYGPCQTPTL 218
V+PN E+++VD R ELDLR+G AFTR+ T Q D S++SYGPCQ PTL
Sbjct: 174 VEPNQHESKAVDMRMELDLRLGAAFTRFNTLALQRAGVGLPVDDKGKSIVSYGPCQFPTL 233
Query: 219 GFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHV 278
GF V+R I E +W + + + G WSRG +FD++ + +
Sbjct: 234 GFIVQRKWDIDAHVSEDFWAIKCSHSREGTTTQFEWSRGRLFDRAFASALHDLCVRANSA 293
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQ 338
TV+DV + P LNT+E+ + + L + P M+IAE LY G++SYPRTET +
Sbjct: 294 TVIDVDGQESKRWPPHPLNTIEMQKRLNRVLRISPEQIMKIAEDLYNDGFISYPRTETDK 353
Query: 339 YPENFDLVAVLRQQESSPDWGDHVREVLSNG-ISKPRKG-KDVGDHPPITPTKLATRTQL 396
+P +FD LR+ P +G +V + + G +P G KD HPPI PTKLAT Q
Sbjct: 354 FPNDFDYDGTLREMHQHPQFGFYVERLTTGGQFRRPPGGTKDDKAHPPIYPTKLATDAQY 413
Query: 397 ------DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
+ +A ++Y+++ RHF+ T V + +A E F + + +
Sbjct: 414 AQMRNKNHNAPKVYEFVCRHFLATCSYPAVALKTHVDVDIAGETFRATGVMIRERNYLDI 473
Query: 451 M------------TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
T+ N ++P + PG+ + ++ + E T PPDYL+E +L+SLME
Sbjct: 474 YGPGPPEGPRLAPTYDNWGNSTLPVYTPGEQF-VPTLNLHEGSTRPPDYLSEVDLLSLME 532
Query: 499 KHGIGTDASIPVHINNIC-QRNYVTVTSGRRLVPTSLGIVLVHGYQKI 545
H IGTDA+ HI + +R Y RL+PT LG LV Y ++
Sbjct: 533 SHMIGTDATQAQHIEKVVGERGYARKVGDNRLMPTELGEALVLAYDRM 580
>gi|296416297|ref|XP_002837817.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633700|emb|CAZ82008.1| unnamed protein product [Tuber melanosporum]
Length = 616
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 190/514 (36%), Positives = 273/514 (53%), Gaps = 18/514 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH + DF ++ W P LF T++ + ++ A +++EA++ + L +
Sbjct: 57 MTSVVGHTVSWDFADEFRRWKDCQPSALFDAATKQFVSPENKEVAANISSEARNAQILYI 116
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I EVM+ + N V RA+FS I I A + P + + R
Sbjct: 117 WTDCDREGEYIGTEVMDLA---MKSNPRVEVKRAKFSNIERAHILHAAQH---PGVLDER 170
Query: 173 ---SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
+V AR ELDLRIG AFTR+QT Q G LD ++SYG CQ PTLGF V+R+ +++
Sbjct: 171 QAAAVRARIELDLRIGAAFTRWQTMLLQTVRG-LDEQVVSYGSCQFPTLGFVVDRYKRVK 229
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKS 289
F PEP+W + + + + V +W RG +FD+ V ++ K VV V S
Sbjct: 230 NFVPEPFWSIRVIHKRDDINVGFSWDRGSLFDRMAVMVMYEKCLAAKVAKVVSVVKKPTS 289
Query: 290 KTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL 349
K KP L TVEL + S LG+ M IAE+LYTQG++SYPRTET Q+ DL A++
Sbjct: 290 KWKPLPLTTVELQKQGSRFLGLSSQLVMNIAEKLYTQGFISYPRTETDQFDRGMDLRALV 349
Query: 350 RQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIV 408
+Q S WG + ++ G S+P+ G + HPPI P +L+ D R+Y+++V
Sbjct: 350 GKQTQSHAWGQFAQGLMEGGFSQPKNGTHNDKAHPPIHPVAYVAPDKLNADEKRVYEFVV 409
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSA-MKNESIPDFKPG 467
R F+ D K +E F +L + V + ++ +P F PG
Sbjct: 410 RRFLACCSKDARGETTTIKLQYGEEGFHTTGLVVLERNYLEVYVYDKWTSSQELPVFTPG 469
Query: 468 DLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV---- 523
++ M E KT PP +LTE ELI+LM+ +GIGTDA++ HI I +R YV
Sbjct: 470 EIFNPTEATMTEGKTCPPGFLTEPELIALMDANGIGTDATMAEHIAKIIERKYVFARPMG 529
Query: 524 TSGRRLVPTSLGIVLVHGYQKI--DRELVEPTMR 555
SG P++LGI LV GY I D L +P +R
Sbjct: 530 RSGGEFSPSNLGIALVEGYDNIGFDMSLSKPFLR 563
>gi|226293455|gb|EEH48875.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb18]
Length = 632
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 184/507 (36%), Positives = 270/507 (53%), Gaps = 18/507 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ GLDF S+Y W+ P LF P + K K+ + A+ + + +
Sbjct: 58 MTSVIGHLTGLDFDSQYRGWNSCPPGRLFDAPVQVSVPKDKQKIAENIQTLARHSKAIFI 117
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I EV R+Q +P+ V RARFS + A N ++ + F+A
Sbjct: 118 WTDCDREGEHIGTEV----RYQARKGNPQIEVKRARFSNTERAHVLHAATNPIELDEFQA 173
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V AR ELDLRIG AFTR QT + G L+ +ISYG CQ PTLGF V+R+ +++ F
Sbjct: 174 NAVAARIELDLRIGAAFTRLQTLQLKSLGGVLEDRIISYGSCQFPTLGFVVDRYFRVKNF 233
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
KPEP+W + ++ +G V+ W R H+FD++ V F+ K V V K
Sbjct: 234 KPEPFWAIKVSHLRDGKTVNFLWRRVHVFDRAAAVVLFERCLSAKTAKVTKVNKKPTRKW 293
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
+P L TV+L + S L M M+IAE LYT+G++SYPRTET Q+ + DL ++ +
Sbjct: 294 RPLPLTTVDLQMMGSKYLRMDSQKVMKIAEGLYTKGFISYPRTETDQFDKGIDLKKLVEK 353
Query: 352 QESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDG-DAWRLYDYIVR 409
Q SS DWG + + ++ ++PR G+ + HPPI P A L D R+Y+++ R
Sbjct: 354 QISSEDWGQYAQRLMDGAFTQPRAGRHNDNAHPPIHPVIYAAPAALSSEDERRVYEFVSR 413
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGD 468
F+ D + DE+F +L + V + + ++ +P F G+
Sbjct: 414 RFLACCSEDAKGESTEIEIKYGDEIFHAHGLLVLERNYLDVYVYDKWESSQEMPVFTVGE 473
Query: 469 LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV---TS 525
+ K+ + KT P YLTE ELI LM+ +GIGTDA++ HI I +R YV +
Sbjct: 474 VFEPTEAKITDGKTVAPGYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVATRPRSG 533
Query: 526 GRR-------LVPTSLGIVLVHGYQKI 545
G R +PT LG+ LV GY +
Sbjct: 534 GGRGNNTVQEFIPTQLGVALVKGYDNV 560
>gi|452822724|gb|EME29741.1| DNA topoisomerase III alpha [Galdieria sulphuraria]
Length = 646
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 197/542 (36%), Positives = 293/542 (54%), Gaps = 25/542 (4%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKREATPKLK 95
V+E+ L + V ++V GHI LDF Y WD + + L T +E P+ K
Sbjct: 56 VYEFELDLDHEKVTMVFSNVAGHIKALDFHENYRGWDSCEQVALLDPSKTPIKEYVPEDK 115
Query: 96 --LPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININS--PKTVWRARFSAI 151
L L NEA+ C L LWLDCD EGE I +EV++ + Q+N++ P V RARFSAI
Sbjct: 116 KFLENNLKNEARSCCKLFLWLDCDSEGEKIAYEVLD-ICQQVNMSFRIPDNVKRARFSAI 174
Query: 152 TDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKY-----GDLDAS 206
T +D + A+ NL + V RQE+DLR G AFTR+ TKF Q ++ GD A
Sbjct: 175 TPQDARNALQNLTSLHYPTVSMVSTRQEIDLRAGAAFTRFLTKFIQNEFRVPLKGDKKA- 233
Query: 207 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNL---NGVAVSVTWSRGHIFDKS 263
++SYGPCQ PTLG V+R IR F+P ++ L+LT++ +G + + W R H+FD+
Sbjct: 234 ILSYGPCQFPTLGLVVDRLLTIRAFQPRLFYYLELTISCESSDGDKLVLIWERKHLFDRY 293
Query: 264 TCNVFFKA-----VEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQ 318
C + ++ + + + D++ KS+ +P L+TVEL R+AS MQ
Sbjct: 294 CCALLYELCYSSLLRSNFQIAIADIKKVRKSRRRPLPLDTVELQRLASRVFFFSSDTTMQ 353
Query: 319 IAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGIS-KPRKG- 376
AERLY++GY+SYPRTET +P +L ++ Q++ WG V++++ + I PR+G
Sbjct: 354 AAERLYSEGYISYPRTETNIFPSTINLSKLVLLQQNDQKWGGFVQKIMEHWIHYSPRQGT 413
Query: 377 KDVGDHPPITPTKLATRTQL-DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMF 435
KD HPPI PTK A R D + +Y+ + R F+ D + V +V E F
Sbjct: 414 KDDKAHPPIHPTKPAPREGFKDKECDAIYELVTRRFLACCSIDAKGYETVVTVNVGFESF 473
Query: 436 TMEAKYLLHPGFTGVMTWSAMKNESIP-DFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
+ + G+ V + +P + + G I + S+ + E T+ P L+ES+L+
Sbjct: 474 HIHGLSIEEAGYLEVYPYDHWSERVLPTELEKGTTIRVVSLMLKEGSTSAPKPLSESDLL 533
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
LM+K+GIGTDA++ HI I R YVT G P +LG+ LV ++ + L PT
Sbjct: 534 GLMDKYGIGTDATMAEHIRKIQHREYVT-KQGNLFYPMALGLALVEAFEACEAYLARPTC 592
Query: 555 RS 556
RS
Sbjct: 593 RS 594
>gi|300706240|ref|XP_002995407.1| hypothetical protein NCER_101713 [Nosema ceranae BRL01]
gi|239604490|gb|EEQ81736.1| hypothetical protein NCER_101713 [Nosema ceranae BRL01]
Length = 805
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 190/510 (37%), Positives = 289/510 (56%), Gaps = 25/510 (4%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
F TSV GHI L+F KY W+ +DP LF P K+ + L L ++ +
Sbjct: 46 FTFTSVLGHIYNLNFCKKYI-WESIDPKILFYEPLTKKIQEDFINLQKNLEEQSYKANKV 104
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
++W DCD+EGE+I ++ ++ + NI + RARF+AI+ D+ A+ NLV NI E
Sbjct: 105 IIWTDCDREGEHIAQQIYNIIKSKNNI----EIKRARFNAISRNDVTRALENLVNININE 160
Query: 171 ARSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYGPCQTPTLGFCVERHD 226
A +VD R E+DLRIG +FT QT FF+ ++ +IS+GPCQ PTLGF +ER
Sbjct: 161 ADAVDCRMEMDLRIGSSFTILQTLTLKSFFKSRH------VISFGPCQIPTLGFVIERFF 214
Query: 227 KIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSS 286
+I FK E ++ +L +N + + TW RG+IFDK+ C +F + ++ ++ + S
Sbjct: 215 QIEKFKEEDFY----SLEINIKSDTWTWKRGNIFDKN-CVTYFYNMLINYNLLIIKKEVS 269
Query: 287 TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLV 346
+ K KP L TVEL ++ SS + H M+IAE LY +GY+SYPRTET +P+NF+
Sbjct: 270 SVFKMKPLPLRTVELQKLCSSIFKISSHKIMEIAESLYNKGYISYPRTETDAFPKNFNYK 329
Query: 347 AVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKLATRTQLDGDAWRLYD 405
+L + S + D + + N I+ PR GK+ H PI P L L G +LYD
Sbjct: 330 NILDKIISDSTYTDIILSI-KNNINLPRSGKNNDMAHSPIYP--LKGGGDLTGLDRKLYD 386
Query: 406 YIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFK 465
+I R F+G+LC D + + + E+F ++ + + V T+ N+ I D++
Sbjct: 387 FITRRFLGSLCADAKGLETYYELLINKEIFYIKGLKITERNYLDVYTFDKWNNKEIQDYE 446
Query: 466 PGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS 525
I S+++ +TTPP +LTESELI+LM+K+GIGTDA+I HI I +R YV
Sbjct: 447 LNKEIKEFSIEIKNGRTTPPYFLTESELITLMDKNGIGTDATIHEHIQKIQERGYV-YKF 505
Query: 526 GRRLVPTSLGIVLVHGYQKIDRELVEPTMR 555
++P LGI L+ G+ ++ E+ +P +R
Sbjct: 506 KNYIIPKKLGIGLIKGFIHLNMEVNKPFLR 535
>gi|425769433|gb|EKV07926.1| DNA topoisomerase [Penicillium digitatum Pd1]
gi|425771095|gb|EKV09549.1| DNA topoisomerase [Penicillium digitatum PHI26]
Length = 571
Score = 326 bits (835), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 182/502 (36%), Positives = 266/502 (52%), Gaps = 12/502 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ GLDF +Y W P LF P ++ KL + + N+AK + L +
Sbjct: 1 MTSVVGHLTGLDFDRQYKGWMSCPPGSLFEAPVQEFVDKDKLPIADNIRNQAKYSKALFI 60
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I EV + NS V RA+FS ++ A V + ++A
Sbjct: 61 WTDCDREGEHIGSEVRS---QALAGNSRIEVKRAKFSNTESAHVRRAALAPVNLDEYQAS 117
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V AR ELDLRIG AFTR QT Q L +ISYG CQ PTLGF V+R+ +++ FK
Sbjct: 118 AVAARIELDLRIGAAFTRLQTLQLQTVVAALKEKVISYGSCQFPTLGFVVDRYLRVQNFK 177
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE +W + + L+ G V+ W R H+FD++ + + K V V SK +
Sbjct: 178 PETFWGIKVILSREGKKVNFLWKRVHLFDRAVVTMMLERCLVAKQAKVTKVSQKPTSKWR 237
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TV+L + S L + M++AE LYT+G++SYPRTET Q+ + DL ++ +Q
Sbjct: 238 PLPLTTVDLQMMGSRFLRLDSQTIMKVAEALYTKGFISYPRTETDQFDKAIDLKKLIEKQ 297
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
WG + RE++ PR G+ + HPPI P + QL+ + ++Y+++VR F
Sbjct: 298 YPDSSWGQYARELVDGKFRTPRFGRHNDKAHPPIHPVSWVSPNQLNANEKKVYEFVVRRF 357
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLI 470
+ D + +E F +L + V + + ++ IP+F+ G+L
Sbjct: 358 LACCSDDAKGQGTEIEIQYGEESFHTNGLIVLERNYLDVYVYDKWESSQQIPNFERGELF 417
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT---SGR 527
+ E KTT P+YLTE ELI LM+ +GIGTDA++ HI I +R YV + SGR
Sbjct: 418 EPTEANIFEGKTTAPNYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVAINQRGSGR 477
Query: 528 ----RLVPTSLGIVLVHGYQKI 545
+PT LGI LV GY +
Sbjct: 478 SAVQEFIPTRLGIALVEGYDNV 499
>gi|327356144|gb|EGE85001.1| DNA topoisomerase [Ajellomyces dermatitidis ATCC 18188]
Length = 630
Score = 326 bits (835), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 182/505 (36%), Positives = 267/505 (52%), Gaps = 16/505 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ LDF S+Y +W+ P LF P A KL + + A+ + L +
Sbjct: 58 MTSVIGHLTSLDFDSQYRSWNSCPPGRLFDAPVTDSVAKDKLSIAENIRTLARQSKALFI 117
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I EV R+Q +P+ V RARFS I A N ++ + +A
Sbjct: 118 WTDCDREGEHIGTEV----RYQARKANPRIEVKRARFSNTERAHILQAAQNPIELDDSQA 173
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V AR ELDLRIG AFTR QT + G L+ +ISYG CQ PTLGF V+R+ +++ F
Sbjct: 174 NAVAARIELDLRIGAAFTRLQTLQLKSLGGALEDRVISYGSCQFPTLGFVVDRYFRVKNF 233
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
KPE +W + ++ +G V+ W R H+FD++ V F+ K V V K
Sbjct: 234 KPEKFWSIKVSHARDGKTVNFLWRRVHLFDRAAVVVLFERCLTSKTAKVTKVNKKPTRKW 293
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
+P L TV+L + S L M M+IAE LYT+G++SYPRTET Q+ + DL ++ +
Sbjct: 294 RPLPLTTVDLQMMGSRYLRMDSQKVMKIAEALYTKGFISYPRTETDQFDKGIDLKKLVEK 353
Query: 352 QESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRH 410
Q S +WG + + +++ ++PR G+ + HPPI P A + L+ D +Y+++ R
Sbjct: 354 QIPSENWGQYAQRLMNGAFTQPRAGRHNDKAHPPIHPVIFAAPSALNADERAVYEFVTRR 413
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDL 469
F+ D + DEMF +L + V + + ++ IP F G+
Sbjct: 414 FLACCSEDAKGESTEVEIKYGDEMFHTNGLLVLERNYLDVYIYDKWESSQEIPPFTLGEA 473
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV------ 523
K+ + KT P YLTE ELI LM+ +GIGTDA++ HI I +R YV
Sbjct: 474 FEPTEAKLTDGKTVAPGYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVATRPRGSG 533
Query: 524 ---TSGRRLVPTSLGIVLVHGYQKI 545
S + +PT LG+ LV GY +
Sbjct: 534 GGSNSVQEFIPTHLGVALVEGYDDV 558
>gi|340520630|gb|EGR50866.1| DNA topoisomerase [Trichoderma reesei QM6a]
Length = 663
Score = 325 bits (832), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 176/471 (37%), Positives = 261/471 (55%), Gaps = 5/471 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MT+V GH+ ++FTS+Y NW P LF+ P K + +A++AK LV+
Sbjct: 55 MTAVTGHLTNVEFTSEYKNWSHPPPESLFAAPIVTNVHDDKKDIAKNIADQAKYARLLVI 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I E+++A + N+ V RARFS + + +A LV+ + +
Sbjct: 115 WTDCDREGEHIGQEIVDAAKKG---NASIQVKRARFSNVERAHVLSAARRLVELDEKQVN 171
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V AR ELDLRIG AFTR+ T + G L ++SYG CQ PTLGF V+R+ +++ F
Sbjct: 172 AVAARIELDLRIGYAFTRFLTNNLKQLGGPLADLVLSYGSCQFPTLGFVVDRYFRVKNFV 231
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PEP+W + LT N +G V +W+R +FD+ T + ++ K V VQ K K
Sbjct: 232 PEPFWGISLTHNKDGKQVRFSWARNRLFDRMTVVILYERCLAAKKAKVTKVQEKPTRKFK 291
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TVEL + A+ L M AM IAE LY +G++SYPRTET ++ + +L A++++Q
Sbjct: 292 PLPLTTVELQKAATRLLRMSGQQAMTIAEGLYNKGFISYPRTETDRFDKGMNLRALVQKQ 351
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
+ WG + + +++ G +PR+GK D HPPI P + L D RLY+Y+VR F
Sbjct: 352 ATDQRWGTYAQGLVNGGFRQPREGKHDDKAHPPIHPIAHVAPSALSYDEGRLYEYVVRRF 411
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES-IPDFKPGDLI 470
+ D DE F+ +L + V + N + +P F G+
Sbjct: 412 LACCSEDAQGMATDIDVQFGDERFSTRGVIVLERNYLDVYIYENWTNTTELPRFTVGEQF 471
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
M E KT+PP+YLTE++LI+LM+ +GIGTDA++ HI I R YV
Sbjct: 472 EPTEAMMTEGKTSPPNYLTEADLIALMDANGIGTDATMAEHIQKIQDREYV 522
>gi|399218372|emb|CCF75259.1| unnamed protein product [Babesia microti strain RI]
Length = 603
Score = 324 bits (830), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 186/509 (36%), Positives = 278/509 (54%), Gaps = 12/509 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK-LPAFLANEAKDCEFLV 111
TSV GH+ LDFT +Y W++ P LF+ P + +P K + L +K C++LV
Sbjct: 56 FTSVRGHLTNLDFTKEYAKWNECSPDVLFTAPI-RSFVSPNCKDIEKNLKEYSKICDWLV 114
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
LWLDCD+EGE I +EV+++ + K ++RA FSA+T DIK A NL +PN A
Sbjct: 115 LWLDCDREGEAIAYEVIDSCAS----SRVKEIYRAIFSAVTKFDIKNACRNLSRPNKNLA 170
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V+ARQE+DLRIG FTR+ T ++ + + D +ISYGPCQ PTLGF +R + F
Sbjct: 171 LAVNARQEIDLRIGSVFTRFMTMRYKHRINN-DTKVISYGPCQLPTLGFVADRFFERENF 229
Query: 232 KPEPYWLLDLTLNL-NGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
E +W + + L +G ++ W R +FD++ + + +++ V + K
Sbjct: 230 VSEKFWYISVEHKLQSGQTLTFKWDRSRLFDQNAVEIIHEECKRKPEALVCGLDKKLTRK 289
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
P T+++ + + L M H AM +AE LY QGY+SYPRTET +PE DL +++
Sbjct: 290 YPPLPATTIQMNKDVTKYLKMSSHRAMSLAEDLYNQGYISYPRTETNVFPETIDLKSLVN 349
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQ-LDGDAWRLYDYIV 408
S GD+ ++ SNG RKGK + HPPI P KL T + + + LY YI
Sbjct: 350 MFTSHSLLGDYASKI-SNGTIAARKGKCNDNAHPPIHPVKLLEATNAMSKEHYDLYLYIS 408
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGD 468
RHF+ +L + + +A E+FT + + + V + +S+P FK GD
Sbjct: 409 RHFLASLSPPAIGYESSVSIDIAGEIFTAKGTMIHDLSWFQVYPYDKWSEKSLPLFKQGD 468
Query: 469 LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRR 528
+K++ +T+PP LTES+LI LM K+GIGTDA++ HI I RNY +
Sbjct: 469 KFFPTEIKLINGETSPPPLLTESDLIDLMCKNGIGTDATMHEHIKKIIDRNYAIKSDNMY 528
Query: 529 LVPTSLGIVLVH-GYQKIDRELVEPTMRS 556
+PT LG L GY +L +P +R+
Sbjct: 529 FLPTKLGQSLAFAGYATTGLDLSKPMLRA 557
>gi|134116726|ref|XP_773035.1| hypothetical protein CNBJ3110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255655|gb|EAL18388.1| hypothetical protein CNBJ3110 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1059
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 188/524 (35%), Positives = 279/524 (53%), Gaps = 18/524 (3%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
F +T+V GH+ DF + W DP LF P + + L EA++ + L
Sbjct: 56 FTVTAVLGHLTSSDFDDDHRKWGSCDPFALFDAPVITFVDQKLKTVESNLQIEARNADIL 115
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
++W DCD+EGE+I EV+ A + +N V RARFSAI I A ++ +
Sbjct: 116 MIWTDCDREGEHIGSEVVAACK---KVNRNILVKRARFSAIIPAQIHQACRQANDLDMRQ 172
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
A +V R LDL++G AFTR T Q + DL LISYGPCQ PTLGF VE++ +++
Sbjct: 173 ADAVATRISLDLKVGSAFTRLTTMTLQVRVPDLAEQLISYGPCQFPTLGFVVEQYTRVQA 232
Query: 231 FKPEPYWLLDLTL-----NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS 285
F PE +W + + L + V W R H+FD V ++ V+ V+S
Sbjct: 233 FVPETFWYIFVALEREHEDGEPSTVEFRWKRNHLFDLDLAAVLYEQCTVNPQTRVLKVES 292
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDL 345
+K KP L TVEL + S L M P + +AE+LY +G VSYPRTET QY FD
Sbjct: 293 KPATKWKPLPLTTVELQQSGSRLLHMTPKRILDLAEKLYQKGIVSYPRTETDQYDPKFDF 352
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLY 404
+++++Q WG + +++L KPR G K+ HPPI PT A L+GD R++
Sbjct: 353 NSLIQKQTLDNQWGAYAQKLLDGAFQKPRNGRKNDKAHPPIHPTAHA--GNLEGDERRVF 410
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
+ I R F+ + + + S+ADE+F+ +L + V + ++P+F
Sbjct: 411 ELITRRFLASCSTNAEGQNTTVEISIADEIFSTTGLVVLRRNYLEVYPYDKWATHALPNF 470
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
+ G++ + + E T+ P LTE++L+ LM+K+GIGTDA+I HI I +R YVT
Sbjct: 471 EEGEVFIPDVIDLKEGTTSRPSLLTEADLVGLMDKNGIGTDATIAEHIAKIIERGYVTEK 530
Query: 525 SGRR---LVPTSLGIVLVHGYQKI--DRELVEPTMR--SAYRVQ 561
R LVP++LGI LV G+ I DR L +P +R + +R+Q
Sbjct: 531 QEARIKYLVPSTLGIGLVEGFNAIGFDRSLSKPHLRRETEHRMQ 574
>gi|115386112|ref|XP_001209597.1| DNA topoisomerase III [Aspergillus terreus NIH2624]
gi|114190595|gb|EAU32295.1| DNA topoisomerase III [Aspergillus terreus NIH2624]
Length = 588
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 187/521 (35%), Positives = 271/521 (52%), Gaps = 32/521 (6%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ LDF S Y +W P LF P + + K + + +AK C+ L +
Sbjct: 1 MTSVIGHLTSLDFESHYKSWLSCPPGALFEAPVHESIDSDKTAIAENIREQAKYCKALFI 60
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I EV R Q +P+ V RARFS + A L++ + +A
Sbjct: 61 WTDCDREGEHIGTEV----RSQAKEGNPRIIVKRARFSNTEKAHVLTAARGLIELDDLQA 116
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V AR ELDLRIG AFTR QT + L +LISYG CQ PTLGF V+R+ +++ F
Sbjct: 117 NAVAARIELDLRIGAAFTRLQTLQLKHLSAALADTLISYGSCQFPTLGFVVDRYLRVKNF 176
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
KPE +W + + +G+ V+ W R H+FD++ V + K V V SK
Sbjct: 177 KPETFWGIKVMHQRDGIKVNFLWKRVHLFDRAAVTVMMERCLLAKKAKVTKVNQKPTSKW 236
Query: 292 KPQALNTVELMRVASSGLGMGPHHAM------------------QIAERLYTQGYVSYPR 333
+P L TV+L + S L + M Q+AE LYT+G++SYPR
Sbjct: 237 RPLPLTTVDLQMMGSRYLRLDSQKIMKVPLRNLILCYLADPCSFQVAEALYTKGFISYPR 296
Query: 334 TETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLAT 392
TET Q+ + DL ++ +Q +WG + R +L G PR G+ + HPPI P +
Sbjct: 297 TETDQFDKGIDLKKLVEKQLPDSNWGQYARGLLDGGFRTPRAGRHNDRAHPPIHPICWVS 356
Query: 393 RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
+ L D ++Y+++VR F+ D + DEMF + +L + V
Sbjct: 357 PSTLSADEKKVYEFVVRRFLACCSEDAKGQSTEVEIEYGDEMFHAKGLIVLERNYLDVYV 416
Query: 453 WSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
+ + ++++P F+ G+ K+ + KTTPP+YLTE ELI LM+ +GIGTDA++ H
Sbjct: 417 YDKWESSQTLPPFQMGETFEPTEAKIFDGKTTPPNYLTEPELIGLMDANGIGTDATMAEH 476
Query: 512 INNICQRNYVTV---TSGR----RLVPTSLGIVLVHGYQKI 545
I + R YV V SGR L+PT LGI LV GY +
Sbjct: 477 IAKVKTRQYVAVHSRGSGRNAVKELIPTRLGIALVEGYDNV 517
>gi|356516381|ref|XP_003526873.1| PREDICTED: DNA topoisomerase 3-alpha [Glycine max]
Length = 913
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 185/519 (35%), Positives = 280/519 (53%), Gaps = 18/519 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
TSV GH+M L+F +Y W DP +LF P K K + L EA+ C++L+L
Sbjct: 54 FTSVTGHLMELEFDDRYRKWHSCDPADLFRAPVHKFVPEDKKDIKRTLEEEARRCQWLIL 113
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI-KAAMWNLVKPNIFEA 171
WLDCD EGENI +EV++ +N T+ RA FS + D+DI AA +L P+ A
Sbjct: 114 WLDCDVEGENIAYEVIDVC---TAVNPHLTIKRAWFSTLIDRDIHNAAQNDLRDPDKRVA 170
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKY-----GDLDASLISYGPCQTPTLGFCVERHD 226
+VD RQE+DLRIG +FTR+QT + + D ++SYGPCQ PTLGF VER
Sbjct: 171 DAVDVRQEIDLRIGASFTRFQTMLMKDAFIIDTATDDRNRVLSYGPCQFPTLGFVVERFW 230
Query: 227 KIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSS 286
+I+ +PE +W + + +W RG +FD + + ++ +E TV +++
Sbjct: 231 EIQAHEPEEFWSIICSHESKEGTAEFSWMRGRLFDYTCAVIIYEMCVEEPTATVTNIRQQ 290
Query: 287 TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLV 346
K K P LNT+EL + AS M H M++AE LY G++SYPRTET + DL
Sbjct: 291 EKPKYPPFPLNTIELQKRASRYFRMSSDHTMKVAEELYQAGFISYPRTETDSFSPGTDLH 350
Query: 347 AVLRQQESSPDWGDHVREVL--SNGI-SKPR-KGKDVGDHPPITPTKLAT-RTQLDGDAW 401
++++Q+ P+WG + + ++ G+ PR G D HPPI PTK +T + D
Sbjct: 351 TIVQEQQGHPEWGIYAQRLMDPEAGLWRNPRGGGHDDKAHPPIYPTKFSTGESGWSQDHR 410
Query: 402 RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI 461
+LY+ +VRHF+ + + + + ++A E+F+ + +L + V + + I
Sbjct: 411 KLYELVVRHFLACVSKPALGAETTVEINIAGELFSACGRVILEKNYLDVYRYESWGGSMI 470
Query: 462 PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLM--EKHGIGTDASIPVHINNICQRN 519
P + G + + T PP L+E++L+S M E+ IGTDA++ HI + R+
Sbjct: 471 PTYTNGQQFNPTKLTLESGVTRPPPLLSEADLLSYMDREEAKIGTDATMQDHIKKMLDRS 530
Query: 520 YVTVTSGRRLVPTSLGIVLVHGYQKIDR--ELVEPTMRS 556
Y T S R PT+LG LV GY ID +L +P +RS
Sbjct: 531 YATKDSSTRFTPTNLGEALVLGYDDIDMTYKLWKPDLRS 569
>gi|156381054|ref|XP_001632081.1| predicted protein [Nematostella vectensis]
gi|156219132|gb|EDO40018.1| predicted protein [Nematostella vectensis]
Length = 940
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 187/507 (36%), Positives = 270/507 (53%), Gaps = 14/507 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+M L+F Y W PL LF P K L + L E + + L++
Sbjct: 53 MTSVSGHLMSLEFAIAYRKWSSCSPLSLFDAPVVKNVGEDYLPIKKTLECEVRGSQALII 112
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGENI E+++ + V+RARFS IT + ++ A NLV P+ ++
Sbjct: 113 WTDCDREGENIGHEIIDVC---TKVCPRIKVYRARFSEITPQSVQRACANLVAPDRLQSE 169
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKY-GDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+VD R ELDLRIG AFTR+QT Q + G L LISYG CQ PTLGF VER+ +++ F
Sbjct: 170 AVDVRMELDLRIGAAFTRFQTLRLQKVFPGFLSDQLISYGSCQFPTLGFVVERYKQVQQF 229
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
PE ++ + ++ V W RG +F + C + ++ + V+ S KSK
Sbjct: 230 VPEQFFKIKVSHETPDGQVDFVWKRGRLFHRLPCLILYQMCLESPTAKVLSTSSRPKSKW 289
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
+P L+TVEL ++AS L + M+IAE+LYTQG S TETT + +++ +
Sbjct: 290 RPLPLDTVELEKLASRKLHINAKETMKIAEKLYTQGRYSVTGTETTTFNAVESMISYIEF 349
Query: 352 QESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVRH 410
+VL+NG PR+G + HPPI PT+ L G+ RLY++IVRH
Sbjct: 350 VTG------FASDVLANG-PNPRQGSKTDNAHPPIHPTQYTN--NLQGNDKRLYEFIVRH 400
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLI 470
F+ D + + +A E FT + + V + + IP ++ +
Sbjct: 401 FLACCSQDAQGRETSVEIDIAGEKFTATGLMITARNYLDVYPYDRWSTKVIPVYETNEEF 460
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLV 530
S++MV+ +TTPP LTE++LI+LMEKHGIGTDA+ HI I R+YV V +
Sbjct: 461 QPTSIEMVDGETTPPPLLTEADLIALMEKHGIGTDATHADHIETIKSRSYVGVQGDGTFL 520
Query: 531 PTSLGIVLVHGYQKIDRELVEPTMRSA 557
P LG+ LV GY + E +P +RS
Sbjct: 521 PGQLGMGLVEGYDLMHFEFSKPKLRSG 547
>gi|405122849|gb|AFR97615.1| DNA topoisomerase type I [Cryptococcus neoformans var. grubii H99]
Length = 959
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 187/524 (35%), Positives = 279/524 (53%), Gaps = 18/524 (3%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
F +T+V GH+ DF + W DP LF P + + L EA++ + L
Sbjct: 56 FTVTAVLGHLTSSDFDDDHRKWGSCDPFALFDAPVITFVDQKLKTVESNLQAEARNADIL 115
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
++W DCD+EGE+I EV+ A + +N V RARFSAI I A ++ +
Sbjct: 116 MIWTDCDREGEHIGSEVVAACK---KVNRNILVKRARFSAIIPAQIHQACRQANDLDMRQ 172
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
A +V R LDLRIG AFTR T Q + DL LISYGPCQ PTLGF VE++++++
Sbjct: 173 ADAVATRISLDLRIGSAFTRLTTMTLQVRVPDLAEQLISYGPCQFPTLGFVVEQYNRVQA 232
Query: 231 FKPEPYWLLDLTL-----NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS 285
F PE +W + + L + V W R H+FD V ++ V+ V+S
Sbjct: 233 FVPETFWYIFVALEREHEDGEPSTVEFRWKRNHLFDLDLAAVLYEQCTVSPQARVLKVES 292
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDL 345
+K KP L TVEL + S L M P + +AE+LY +G VSYPRTET QY F+
Sbjct: 293 KPATKWKPLPLTTVELQQSGSRLLHMTPKQILDLAEKLYQKGIVSYPRTETDQYDPKFEF 352
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLY 404
++++Q WG + +++L +PR G K+ HPPI PT A L+GD R++
Sbjct: 353 NPLIQKQTLDNQWGAYAQKLLDGAFQRPRNGRKNDKAHPPIHPTAHA--GNLEGDERRVF 410
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
+ I R F+ + + + S+ADE+F+ +L + V + ++P+F
Sbjct: 411 ELITRRFLASCSANAEGQNTTVEISIADEIFSTTGLVVLRRNYLEVYPYDKWATHALPNF 470
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
+ G++ + + E T+ P LTE++L+ LM+K+GIGTDA+I HI I +R YVT
Sbjct: 471 EEGEVFIPNVIDLKEGTTSRPSLLTEADLVGLMDKNGIGTDATIAEHIAKIIERGYVTEK 530
Query: 525 SGRR---LVPTSLGIVLVHGYQKI--DRELVEPTMR--SAYRVQ 561
R LVP++LG+ LV G+ I DR L +P +R + +R+Q
Sbjct: 531 QEARIKYLVPSTLGVGLVEGFNAIGFDRSLSKPHLRRETEHRMQ 574
>gi|402580660|gb|EJW74609.1| DNA topoisomerase [Wuchereria bancrofti]
Length = 268
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 152/263 (57%), Positives = 188/263 (71%), Gaps = 2/263 (0%)
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
M NL +PNI E+ SVDARQELDLRIGCAFTR+QT++FQGKYGDLD++ IS+GPCQTPTLG
Sbjct: 1 MRNLGRPNINESLSVDARQELDLRIGCAFTRFQTRYFQGKYGDLDSTTISFGPCQTPTLG 60
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHV 278
FCV RHD I FKPEPYW+L + G + T RG IFDK C +F ++K+
Sbjct: 61 FCVTRHDLITQFKPEPYWILQAIFETSSGDTLKPTHVRGRIFDKDVCQLFLDRIKKQNQG 120
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQ 338
VVDV SS K +PQALNTVEL++VASSGLG+ P M AE LYT+G++SYPRTETT
Sbjct: 121 VVVDVVSSELRKERPQALNTVELLKVASSGLGLSPTQTMSTAEYLYTRGFISYPRTETTA 180
Query: 339 YPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDG 398
YP NFD LR Q++ W D V+++LS GI+KPR G+D GDHPPI+P + L G
Sbjct: 181 YPSNFDFSEALRHQQNDSRWKDIVKKLLSEGITKPRNGEDKGDHPPISPLR-GNDGSLTG 239
Query: 399 DAWRLYDYIVRHFIGTLCGDLVY 421
DA ++YDY+ +HFI TL +Y
Sbjct: 240 DALKIYDYVTQHFIATLMQPCIY 262
>gi|308801985|ref|XP_003078306.1| DNA topoisomerase III alpha, putative (ISS) [Ostreococcus tauri]
gi|116056757|emb|CAL53046.1| DNA topoisomerase III alpha, putative (ISS) [Ostreococcus tauri]
Length = 842
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 195/535 (36%), Positives = 274/535 (51%), Gaps = 46/535 (8%)
Query: 46 GDLVLFKMTSVCGHIMGLDFTS-KYNNWDKVDPLELF-SCPTEKREATPKLKLPAFLANE 103
G V TSV GH+ +F ++ W VDP EL KR K K + E
Sbjct: 50 GRPVTMVFTSVTGHLSNFEFAEERHRRWASVDPRELLVDARVVKRVPEDKRKTAENVKRE 109
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
A+ C+ ++LWLDCD+EGENI FEV+EA R T RARFSA+ D A+ NL
Sbjct: 110 ARGCDTVILWLDCDREGENIAFEVLEACRQ---AKPGITALRARFSALGRGDADRALANL 166
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG------DLDASLISYGPCQTPT 217
V+PN +EA++VD R ELDLR+G AFTR+ T Q + G D S++SYGPCQ PT
Sbjct: 167 VQPNEYEAKAVDMRMELDLRLGAAFTRFNTLALQ-RAGVGLPVDDKGKSIVSYGPCQFPT 225
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKH 277
LGF V+R I E +W + + G WSRG +FD+ + +
Sbjct: 226 LGFIVQRKWDIDAHVSEDFWSIKCSHAREGTNTKFEWSRGRLFDRGFASALHNMCARANV 285
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
TV+DV + P LNT+E+ + + L + P M+IAE LY G++SYPRTET
Sbjct: 286 ATVIDVDGQESRRWPPHPLNTIEMQKRLNRTLRISPEQIMKIAEDLYNDGFISYPRTETD 345
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISK--PRKGKDVGDHPPITPTKLATRTQ 395
++P +F+ LR P +G +V ++++ G + P GKD HPPI PTKLA+ Q
Sbjct: 346 KFPADFNYDGTLRDLHPHPQFGFYVDQLINGGRFRQPPGGGKDDKAHPPIYPTKLASEAQ 405
Query: 396 L------DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTM------EAKYL- 442
+ A ++Y+++VRHF+ T + + VA E F E YL
Sbjct: 406 YQQMRAKNQHAPKVYEFVVRHFLATCSHPAIAMKTHVDIVVAGETFRATGVMIRERNYLD 465
Query: 443 -----------LHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTES 491
L P + W N ++P + PG+ + ++ + E +T PPDYL+E
Sbjct: 466 IYGPGPPEGPRLAPAYD---NWG---NSTLPLYTPGEQF-VPALSLHEGQTRPPDYLSEV 518
Query: 492 ELISLMEKHGIGTDASIPVHINNIC-QRNYVTVTSGRRLVPTSLGIVLVHGYQKI 545
+L+SLME H IGTDA+ HI + +R Y RL PT LG LV Y ++
Sbjct: 519 DLLSLMESHMIGTDATQAQHIEKVVGERGYARKVGDNRLTPTQLGEALVLAYDRM 573
>gi|225684061|gb|EEH22345.1| DNA topoisomerase III [Paracoccidioides brasiliensis Pb03]
Length = 710
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 182/507 (35%), Positives = 271/507 (53%), Gaps = 23/507 (4%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ GLDF S+Y W+ P LF P + ++ K+ + A+ + + +
Sbjct: 58 MTSVIGHLTGLDFDSQYRGWNSCPPGRLFDAPVQDKQ-----KIAENIQTLARHSKAIFI 112
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I EV R+Q +P+ V RARFS + A N ++ + F+A
Sbjct: 113 WTDCDREGEHIGTEV----RYQARKGNPQIEVKRARFSNTERAHVLHAATNPIELDEFQA 168
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V AR ELDLRIG AFTR QT + G L+ +ISYG CQ PTLGF V+R+ +++ F
Sbjct: 169 NAVAARIELDLRIGAAFTRLQTLQLKSLGGVLEDRIISYGSCQFPTLGFVVDRYFRVKNF 228
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
KPEP+W + ++ +G V+ W R H+FD++ V F+ K V V K
Sbjct: 229 KPEPFWAIKVSHLRDGKTVNFLWRRVHVFDRAAAVVLFERCLSAKTAKVTKVNKKPTRKW 288
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
+P L TV+L + S L M M+IAE LYT+G++SYPRTET Q+ + DL ++ +
Sbjct: 289 RPLPLTTVDLQMMGSKYLRMDSQKVMKIAEGLYTKGFISYPRTETDQFDKGIDLKKLVEK 348
Query: 352 QESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDG-DAWRLYDYIVR 409
Q SS +WG + + ++ ++PR G+ + HPPI P A L D R+Y+++ R
Sbjct: 349 QISSENWGQYAQRLIDGAFTQPRAGRHNDNAHPPIHPVIYAAPAALSSEDERRVYEFVSR 408
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGD 468
F+ D + DE+F +L + V + + ++ +P F G+
Sbjct: 409 RFLACCSEDAKGESTEIEIKYGDEIFHAHGLLVLERNYLDVYVYDKWESSQEMPVFTVGE 468
Query: 469 LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV---TS 525
+ K+ + KT P YLTE ELI LM+ +GIGTDA++ HI I +R YV +
Sbjct: 469 VFEPTEAKITDGKTVAPGYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVATRPRSG 528
Query: 526 GRR-------LVPTSLGIVLVHGYQKI 545
G R +PT LG+ LV GY +
Sbjct: 529 GGRGNNTVQEFIPTQLGVALVKGYDNV 555
>gi|218201738|gb|EEC84165.1| hypothetical protein OsI_30540 [Oryza sativa Indica Group]
Length = 897
Score = 322 bits (825), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 187/536 (34%), Positives = 277/536 (51%), Gaps = 55/536 (10%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
V E+ + G +TSV GH+M L+F ++ W DP +LF P K K +
Sbjct: 48 VFEFDYSIGGRACHMLVTSVTGHLMELEFDDRFRRWHSCDPADLFHAPVRKSVPQDKQDI 107
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L EA+ C++LVLWLDCD+EGENI +EV++ NS +WRA FSA+ D++I
Sbjct: 108 KRTLEEEARKCQWLVLWLDCDREGENIAYEVIDIC---AGANSRLNIWRACFSALIDREI 164
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKY-----GDLDASLISYG 211
A+ +L +PN A +VDARQE+DLRIG +FTR+QT + + GD ++SYG
Sbjct: 165 HEAVQHLDRPNKLFADAVDARQEIDLRIGASFTRFQTVLLKDAFVLDDTGDDRNIILSYG 224
Query: 212 PCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKA 271
PCQ PTLGF VER +I+ +PE +W ++ + + S W RGH+FD S+ V ++
Sbjct: 225 PCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGTASFGWIRGHLFDYSSAVVIYEM 284
Query: 272 VEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSY 331
KE TV +V++ K K P L+T+EL + AS M H M++AE LY G++SY
Sbjct: 285 CVKEPMATVQNVRNQEKLKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGFISY 344
Query: 332 PRTETTQYPENFDLVAVLRQQESSPDWGDHVREVL----------SNGISKPRKGKDVGD 381
PRTET + N DL +++ +Q + P+ G + + +L SNG G D
Sbjct: 345 PRTETDNFSPNIDLHSIVHEQVAHPNRGIYAQRLLDPEARLWRNPSNG------GHDDKA 398
Query: 382 HPPITPTKL-ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
HPPI PTK A T + +LY+ +VRHF+ V + + ++A E F +
Sbjct: 399 HPPIHPTKFSAGETNWTDNHKKLYELVVRHFLACCSQPAVGAETTVEINIAGEQFNASGR 458
Query: 441 YLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKH 500
+L + V + + +P + G ++
Sbjct: 459 VVLAKNYLDVYRFDSWGGTLLPTYIIG------------------------------QQA 488
Query: 501 GIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
GIGTDA++ HI + R Y T + R PT+LG LV GY ++ EL +P +RS
Sbjct: 489 GIGTDATMHDHIKKLLDRCYATKNANTRFSPTNLGEALVMGYNEMGYELWKPYLRS 544
>gi|417412874|gb|JAA52796.1| Putative dna topoisomerase iii alpha, partial [Desmodus rotundus]
Length = 837
Score = 322 bits (824), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 173/416 (41%), Positives = 246/416 (59%), Gaps = 4/416 (0%)
Query: 143 VWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD 202
V RARFS IT + I+ A NL +P+ + +VD RQELDLRIG AFTR+QT Q + +
Sbjct: 11 VLRARFSEITPRAIRMACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQRIFPE 70
Query: 203 -LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFD 261
L LISYG CQ PTLGF VER I+ F PE + + +T + V +W R +F+
Sbjct: 71 VLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIKVTHDHRDGIVEFSWKRHRLFN 130
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
+ C V + ++ TVV+V S KSK +PQAL+TVEL ++AS L + M+IAE
Sbjct: 131 HTACLVLYHLCMEDPMATVVEVSSKAKSKWRPQALDTVELEKLASRKLRINAKETMRIAE 190
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVG 380
+LYTQGY+SYPRTET +P++ +L A++ QQ P WG + +L G PR G K
Sbjct: 191 KLYTQGYISYPRTETNVFPKDLNLTALVEQQTPDPHWGSFAQSILERGGPTPRNGNKSDQ 250
Query: 381 DHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
HPPI PTK + L GD RLY++IVRHF+ D + + +A E F
Sbjct: 251 AHPPIHPTKYT--SSLQGDEQRLYEFIVRHFLACCSQDAQGQETTVEIDIAQERFVAHGL 308
Query: 441 YLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKH 500
+L + V + ++++P ++ G +++MV+ +T+PP LTE++LI+LMEKH
Sbjct: 309 MILARNYLDVYPYDRWSDKTLPVYERGSRFQPSTMQMVDGETSPPQLLTEADLIALMEKH 368
Query: 501 GIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
GIGTDA+ HI I R YV +T +R +P LG+ LV GY + E+ +P +R+
Sbjct: 369 GIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMGLVEGYDAMGYEMSKPDLRA 424
>gi|400597476|gb|EJP65209.1| DNA topoisomerase [Beauveria bassiana ARSEF 2860]
Length = 667
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 174/483 (36%), Positives = 264/483 (54%), Gaps = 6/483 (1%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLA 101
GP +G + MT V GH+ L+FT+++ NW P LF+ P K + LA
Sbjct: 45 GPPYGQCSV-TMTCVSGHLTNLEFTAEHKNWSFPPPESLFNAPVISNVYQDKKNIAQNLA 103
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMW 161
++A+ LV+W DCD+EGE+I E+++A + N+ V RARFS I + +A
Sbjct: 104 DQARYARLLVIWTDCDREGEHIGQEIVDAAKKG---NAQLQVKRARFSNIERAHVLSAAM 160
Query: 162 NLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
L+ ++ + +V AR ELDLRIG AFTR+ T + G ++ +SYG CQ PTLGF
Sbjct: 161 RLIDLDVRQVNAVAARIELDLRIGYAFTRFMTNNLRPLGGPMENLTLSYGSCQFPTLGFV 220
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV 281
V+R+ +++ F PEP+W + +T + G +WSR +FD+ T + ++ K +
Sbjct: 221 VDRYFRVKNFVPEPFWGIKVTHSREGKQAIFSWSRYRLFDRMTTIILYERCLAAKMAKIT 280
Query: 282 DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPE 341
VQ K KP L TVEL + A+ L M AM IAE LY +G++SYPRTET ++ +
Sbjct: 281 KVQEKPTRKFKPLPLTTVELQKAATRLLRMSGQQAMTIAEGLYNKGFISYPRTETDRFDK 340
Query: 342 NFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDA 400
+L A++++Q WGD + +++ G +PR+G+ D HPPI P A + L+ D
Sbjct: 341 GMNLRALVQKQTPDQRWGDFAQGLVNGGFQQPREGRHDDKAHPPIHPITYAAPSVLNYDE 400
Query: 401 WRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES 460
RLY+Y+VR F+ D + +EMF+ +L + V + + +
Sbjct: 401 GRLYEYVVRRFLACCSEDAKGSATEIDLQYGEEMFSTRGVIVLERNYLDVYVYEKWNDTA 460
Query: 461 -IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
+P F G+ M E KT PP YLTE++LI+LM+ +GIGTDA++ HI I R
Sbjct: 461 ELPKFTVGEQFEPTEAMMTEGKTGPPSYLTEADLIALMDANGIGTDATMAEHIQKIQDRE 520
Query: 520 YVT 522
YV
Sbjct: 521 YVA 523
>gi|239608834|gb|EEQ85821.1| DNA topoisomerase III [Ajellomyces dermatitidis ER-3]
Length = 632
Score = 321 bits (822), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 182/507 (35%), Positives = 267/507 (52%), Gaps = 18/507 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ LDF S+Y +W+ P LF P A KL + + A+ + L +
Sbjct: 58 MTSVIGHLTSLDFDSQYRSWNSCPPGRLFDAPVTDSVAKDKLSIAENIRTLARQSKALFI 117
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I EV R+Q +P+ V RARFS I A N ++ + +A
Sbjct: 118 WTDCDREGEHIGTEV----RYQARKANPRIEVKRARFSNTERAHILQAAQNPIELDDSQA 173
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISY--GPCQTPTLGFCVERHDKIR 229
+V AR ELDLRIG AFTR QT + G L+ +ISY G CQ PTLGF V+R+ +++
Sbjct: 174 NAVAARIELDLRIGAAFTRLQTLQLKSLGGALEDRVISYVSGSCQFPTLGFVVDRYFRVK 233
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKS 289
FKPE +W + ++ +G V+ W R H+FD++ V F+ K V V
Sbjct: 234 NFKPEKFWSIKVSHARDGKTVNFLWRRVHLFDRAAVVVLFERCLTSKTAKVTKVNKKPTR 293
Query: 290 KTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL 349
K +P L TV+L + S L M M+IAE LYT+G++SYPRTET Q+ + DL ++
Sbjct: 294 KWRPLPLTTVDLQMMGSRYLRMDSQKVMKIAEALYTKGFISYPRTETDQFDKGIDLKKLV 353
Query: 350 RQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIV 408
+Q S +WG + + +++ ++PR G+ + HPPI P A + L+ D +Y+++
Sbjct: 354 EKQIPSENWGQYAQRLMNGAFTQPRAGRHNDKAHPPIHPVIFAAPSALNADERAVYEFVT 413
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPG 467
R F+ D + DEMF +L + V + + ++ IP F G
Sbjct: 414 RRFLACCSEDAKGESTEVEIKYGDEMFHTNGLLVLERNYLDVYIYDKWESSQEIPPFTLG 473
Query: 468 DLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV---- 523
+ K+ + KT P YLTE ELI LM+ +GIGTDA++ HI I +R YV
Sbjct: 474 EAFEPTEAKLTDGKTVAPGYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVATRPRG 533
Query: 524 -----TSGRRLVPTSLGIVLVHGYQKI 545
S + +PT LG+ LV GY +
Sbjct: 534 SGGGSNSVQEFIPTHLGVALVEGYDDV 560
>gi|392593523|gb|EIW82848.1| prokaryotic type I DNA topoisomerase [Coniophora puteana RWD-64-598
SS2]
Length = 717
Score = 321 bits (822), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 192/517 (37%), Positives = 277/517 (53%), Gaps = 29/517 (5%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
F +TSV GHIMG DF Y +W VDPL+LF+ P K+K+ L A+ L
Sbjct: 49 FTVTSVSGHIMGHDFDEVYKSWRSVDPLQLFTLPVRCNVDKEKVKIKENLQQLARTANTL 108
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
++W DCD+EGENI +E+M+ R + + TV RARFSAI I A V+ ++ +
Sbjct: 109 MIWTDCDREGENIGYEIMQVCRE---VKANITVNRARFSAIIQNQIHRAAQRPVELDMAQ 165
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
A +V+AR LDLRIG AFTR Q+ Q ++SYGPCQ PTLGF V R+ + R
Sbjct: 166 AYAVEARSILDLRIGAAFTRMQSLTLQSTVAV--EGVVSYGPCQFPTLGFVVARYCEARA 223
Query: 231 FKPEPYWLLDLTL--NLNG--VAVSVTWSRGHIFDKSTCNVFFKAVEK--EKHVTVVDVQ 284
F EP+W + L L + G + +W R H+F+ V ++ + + V
Sbjct: 224 FTEEPFWYITLLLTRQVGGHPKETAFSWRRNHLFNFDDVFVIYERIMAIDNARARITKVT 283
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD 344
T K KP L TVEL + S L + P + +AE+LY G++SYPRTET QY FD
Sbjct: 284 KKTTKKYKPLPLTTVELQKAGSRLLKLAPKKVLDVAEKLYQDGFLSYPRTETDQYDPQFD 343
Query: 345 LVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRL 403
+A++ +Q + WG R KGK + HPPI PT A L GD ++
Sbjct: 344 FMALIEKQTADSAWGTFARG----------KGKHNDKAHPPIHPTAHAA--NLTGDQKKV 391
Query: 404 YDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPD 463
Y+YI R F+ + D + A+ E+F+ +L + V + ++ +PD
Sbjct: 392 YEYITRRFLASCSKDAEGFETKAEVDYGGELFSASGLSVLRRNYLEVYPYDKWSDKDMPD 451
Query: 464 FKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV 523
F G+ S ++ E KT+ P LTE++L++LM+K+GIGTDA+I HI+ I R YVT
Sbjct: 452 FVEGETFEPTSCEVKEGKTSAPSLLTEADLVTLMDKNGIGTDATIAQHIDTIVTRKYVTE 511
Query: 524 T---SGRRLVPTSLGIVLVHGYQKI--DRELVEPTMR 555
S + L P+ LG+ L+ GY +I +R L +P +R
Sbjct: 512 IKEGSTKYLAPSPLGLGLIGGYNQIGLERSLSKPQLR 548
>gi|358391864|gb|EHK41268.1| hypothetical protein TRIATDRAFT_249816 [Trichoderma atroviride IMI
206040]
Length = 663
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 173/475 (36%), Positives = 262/475 (55%), Gaps = 8/475 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MT V GH+ ++FT++Y NW P LF+ P K + K + +A++AK LV+
Sbjct: 55 MTCVTGHLTNVEFTNEYKNWSHPPPESLFTAPIVKND---KKDIAKNIADQAKYARLLVI 111
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I E+++A + N+ V RARFS + + A L++ + +
Sbjct: 112 WTDCDREGEHIGQEIVDAAKVG---NAAIQVKRARFSNVERAHVLTAARRLIELDEKQVN 168
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V AR ELDLRIG AFTR+ T + G L ++SYG CQ PTLGF V+R+ +++ F
Sbjct: 169 AVSARIELDLRIGYAFTRFITNNLKHLGGPLAELVLSYGSCQFPTLGFVVDRYFRVKNFV 228
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PEP+W + LT N +G V +W+R +FD+ T + ++ K V VQ K K
Sbjct: 229 PEPFWGISLTHNKDGKQVRFSWARNRLFDRMTAVLLYERCLDAKKAKVTKVQEKPTRKFK 288
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TVEL + A+ L M AM IAE LY +G++SYPRTET ++ + +L A++++Q
Sbjct: 289 PLPLTTVELQKAATRLLRMSGQQAMTIAEGLYNKGFISYPRTETDRFDKGMNLRALVQKQ 348
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
+ WG + +++ G +PR+G+ D HPPI P + L D RLY+Y+ R F
Sbjct: 349 TTDQRWGPFAQGLVNGGFQQPREGRHDDKAHPPIHPIAHVAPSVLSHDEGRLYEYVTRRF 408
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES-IPDFKPGDLI 470
+ D + + DE F+ +L + V + N + +P F G+
Sbjct: 409 LACCSEDAKGMATDIELQLGDEYFSTRGVIVLERNYLDVYVYENWNNSTELPKFTVGEQF 468
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS 525
M E KT+PP+YLTE++LI+LM+ +GIGTDA++ HI I R YV +
Sbjct: 469 EPTEAMMTEGKTSPPNYLTEADLIALMDANGIGTDATMAEHIQKIQDREYVATIT 523
>gi|126649179|ref|XP_001388262.1| DNA topoisomerase III [Cryptosporidium parvum Iowa II]
gi|126117184|gb|EAZ51284.1| DNA topoisomerase III, putative [Cryptosporidium parvum Iowa II]
Length = 814
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 188/518 (36%), Positives = 281/518 (54%), Gaps = 18/518 (3%)
Query: 46 GDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELF--SCPTEKREATPKLKLPAFLANE 103
GD +TSV GH+ L F SKY++W V+P+ L S P + + L
Sbjct: 92 GDECNMIVTSVRGHLKQLGFASKYSDWGSVNPVVLLDLSTPVISSILPDCMGIADNLTYF 151
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
+K +L+LWLDCD+EGENI FEV+ +N N +RA FSAIT +I AM L
Sbjct: 152 SKISSYLILWLDCDREGENIAFEVLSIC---LNSNKNLITFRAHFSAITKFEINNAMKKL 208
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVE 223
PN + +V+AR+E+DLR+G +FTR+ T + + + +L SYG CQ PTLGF V
Sbjct: 209 SFPNRALSDAVEARKEIDLRVGSSFTRFLTLRYSRLFPIPERTL-SYGTCQFPTLGFVVS 267
Query: 224 RHDKIRTFKPEPYWLLDLTL--------NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKE 275
R+ KI F+ E W + L + N V W RG +FD + ++ +
Sbjct: 268 RYKKIINFREEDEWTITLEVKMKIYEGNNKEMSNVIFEWERGKLFDNLFTFIIYETCIEN 327
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
+ + ++ ++ K KP LNTVE+ ++AS L P + IAE LY +GY+SYPRTE
Sbjct: 328 SNARIKEIVNNKILKRKPLPLNTVEMTKIASDKLKFSPIKCINIAENLYRKGYISYPRTE 387
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLS-NGISKPRKG-KDVGDHPPITPTKLATR 393
T + ++ D+ +++QE S +G E+L N S PRKG KD G HPPI P K +
Sbjct: 388 TNSFSDSIDISKYIKEQEKSSIFGSFANELLYLNSFSVPRKGCKDDGSHPPIHPVKCLNK 447
Query: 394 TQL-DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
Q + W LY+ I RHF+ + D V + + K ++ E F + ++ + +
Sbjct: 448 EQASSNEEWLLYELITRHFLSSCSEDAVIMETIVKVDISGETFKTKGTVIIEENWLKIYY 507
Query: 453 -WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
+ +K + +P F G+L + + + KT PP L+E+ELI LM+K+GIGTDA++ H
Sbjct: 508 PFERIKTKILPAFNLGNLAFPYKLFLRKSKTIPPTLLSEAELIDLMDKNGIGTDATMHEH 567
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDREL 549
I I R YV S L PT+LG+ L +G++ I R++
Sbjct: 568 IEKIQVRQYVKKNSKSLLSPTALGVALYNGFELISRKM 605
>gi|111120268|gb|ABH06319.1| topoisomerase (DNA) III beta [Bos taurus]
Length = 295
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 158/285 (55%), Positives = 200/285 (70%), Gaps = 4/285 (1%)
Query: 10 PASEIKLARPSLISLLTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKY 69
P+ +AR ++ + +NG CSVHE+ G G FKMTSVCGH+M LDF KY
Sbjct: 11 PSLAQSIARILSRGSMSSRKGLNGTCSVHEYSGAFEGQPARFKMTSVCGHVMTLDFLGKY 70
Query: 70 NNWDKVDPLELFS-CPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVM 128
N WDKVDP ELFS PTEK+EA PKL + FL E + C+ +VLWLDCDKEGENICFEV+
Sbjct: 71 NKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDCIVLWLDCDKEGENICFEVL 130
Query: 129 EAVRHQINI--NSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGC 186
+AV +N + +TV+RARFS+ITD DI AAM L +P+ EA SVDARQELDLRIGC
Sbjct: 131 DAVLPVMNQARSGEQTVFRARFSSITDTDICAAMARLGEPDHNEALSVDARQELDLRIGC 190
Query: 187 AFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN 246
AFTR+QTK+FQGKYG+LD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L ++++
Sbjct: 191 AFTRFQTKYFQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVDVD 250
Query: 247 -GVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
++ + W R +FD+ +F + EK V K+K
Sbjct: 251 KDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAK 295
>gi|299752369|ref|XP_001830882.2| hypothetical protein CC1G_02333 [Coprinopsis cinerea okayama7#130]
gi|298409801|gb|EAU90946.2| hypothetical protein CC1G_02333 [Coprinopsis cinerea okayama7#130]
Length = 929
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 188/517 (36%), Positives = 277/517 (53%), Gaps = 26/517 (5%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
F +T V GH+ DFT ++ W DP LF + K + L N+A+ + L
Sbjct: 49 FVVTCVTGHLTSTDFTEQHRGWHSCDPSALFDAEVQTFVPQDKKAIETNLKNQARYADML 108
Query: 111 VLWLDCDKEGENICFEVMEAVRH-QININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
++W DCD+EGE+I EV+ R + NI V RARFSAI + I A + V+ ++
Sbjct: 109 MIWTDCDREGEHIGMEVVNVCRRVRPNIQ----VKRARFSAIIAQQIHRAAQHPVELDLR 164
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
+A +V+AR LDL+IG AFTR QT + Q ++ + S++SYGPCQ PTLGF V+R+ K++
Sbjct: 165 QADAVEARILLDLKIGAAFTRLQTLYLQNRFQQI-TSVVSYGPCQFPTLGFVVQRYLKVQ 223
Query: 230 TFKPEPYWLLDLTLNL---NGVA--VSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQ 284
F+PE +W + L LN +G A V +W R H FD + + V V+ V
Sbjct: 224 DFRPETFWYIHLELNARDDDGHAQLVKFSWKRPHQFDYDVAHSLYARVLDNVRARVLKVV 283
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD 344
K KP L TVEL + S L M P +++ ++SYPRTET QY FD
Sbjct: 284 KKETKKWKPLPLTTVELQKAGSRLLKMAP-------KKILDARFLSYPRTETDQYDNQFD 336
Query: 345 LVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRL 403
+ ++ +Q + WGD R + G + PRKGK+ HPPI PT A L GD R+
Sbjct: 337 FMTLINKQTADNAWGDFARRLQQGGFNAPRKGKNNDKAHPPIHPTAHAG--HLTGDEKRV 394
Query: 404 YDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPD 463
Y+YI R F+ + D Q + E FT ++ + V + +P+
Sbjct: 395 YEYITRRFLASCSEDARGNQTTVEVVCGGEEFTATGLGIIARNYLEVFPYDKWAEHELPN 454
Query: 464 FKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV 523
F+ G ++ E +TT P+YLTE++L++LM+K+GIGTDA+I HI I QR YV
Sbjct: 455 FEEGQEFNPTLCELREGQTTAPNYLTEADLVALMDKNGIGTDATIAQHIETIIQREYVIE 514
Query: 524 T---SGRRLVPTSLGIVLVHGYQKI--DRELVEPTMR 555
S + L+P++LGI L+ GY I ++ + +P +R
Sbjct: 515 RMEGSTKYLIPSTLGIGLIEGYNNIGLEKSVSKPVLR 551
>gi|328860051|gb|EGG09158.1| hypothetical protein MELLADRAFT_34533 [Melampsora larici-populina
98AG31]
Length = 749
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 189/515 (36%), Positives = 278/515 (53%), Gaps = 15/515 (2%)
Query: 49 VLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK-LPAFLANEAKDC 107
+ F +TSV GH+ DF + + W DP LF P E R TP+ K + L EA+
Sbjct: 50 ISFTVTSVLGHLTQSDFDAHHKKWSNCDPFALFDAPIE-RFVTPEHKGIERNLQAEARGS 108
Query: 108 EFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPN 167
+ L++W DCD+EGE+I E+ + N TV RARFSAI I A + +
Sbjct: 109 DRLMIWTDCDREGEHIGSEIKSVC---LKANRNLTVSRARFSAIIPAQIHNACRTAGELD 165
Query: 168 IFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDK 227
+ +A +V+ R ELDLRIG A TR QT Q ++ ++ ++ISYGPCQ PTLGF V+++DK
Sbjct: 166 MKQANAVETRMELDLRIGAALTRQQTLGLQPRFPQIE-TVISYGPCQFPTLGFVVDQYDK 224
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
+ F PE +W + +TL V+V W R +FD T ++ E T+ +V
Sbjct: 225 VAAFVPETFWYIHVTLERENVSVEFKWKRNRLFDHHTAFALYEMCADEPEATIQNVAVKP 284
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
+K KP L TVEL + S L + P + IAE+LY +G VSYPRTET Q+ FD A
Sbjct: 285 ATKWKPLPLTTVELQKTGSRLLHLTPKTILDIAEKLYIRGLVSYPRTETDQFDPAFDHQA 344
Query: 348 VLRQQESSPDWGDHVREVLSNGISK-PRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYD 405
++ +Q + WG + + G + PR G K+ HPPI PT A L D R+Y+
Sbjct: 345 LIEKQINDASWGGFASRLKNEGAFQLPRNGKKNDKAHPPIHPTAHA--NDLASDEKRVYE 402
Query: 406 YIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFK 465
I R ++ + + +A+E FT +L + V + ++PDF+
Sbjct: 403 LITRRYLACCSKNAIGKTTTIDVLIAEEEFTATGLVILERNYLEVYIYDKWSGNTLPDFQ 462
Query: 466 PGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT- 524
G+ ++ E TT P+ LTE++L+ LM+K+GIGTDA+I HI I R+YV +
Sbjct: 463 VGEKFLPSVCELNEGTTTRPNLLTEADLVGLMDKNGIGTDATIAEHIARIIDRSYVFKSR 522
Query: 525 --SGRRLVPTSLGIVLVHGYQKI--DRELVEPTMR 555
+ + L+P++LGI LV GY I D+ L +P +R
Sbjct: 523 EGNVQYLLPSTLGIGLVEGYNAIGLDKSLSKPQLR 557
>gi|242785292|ref|XP_002480564.1| DNA topoisomerase III, putative [Talaromyces stipitatus ATCC 10500]
gi|218720711|gb|EED20130.1| DNA topoisomerase III, putative [Talaromyces stipitatus ATCC 10500]
Length = 660
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 182/520 (35%), Positives = 265/520 (50%), Gaps = 30/520 (5%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ GL+F +Y W P LF P + + KL + + +A+ C+ L +
Sbjct: 59 MTSVIGHLTGLEFGKEYKGWTSCPPSLLFEVPVFENVDSDKLSIADNIKKQAQYCKALFI 118
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I EV + R N+ V RARFS + A ++ + +A
Sbjct: 119 WTDCDREGEHIGTEVKKQARLG---NARIEVKRARFSNTERAHVLRAAREPIELDEKQAN 175
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V AR ELDLR+G AFTR QT Q LD ISYG CQ PTLGF V+R+ +++ FK
Sbjct: 176 AVAARIELDLRVGAAFTRLQTLQLQTLGSPLDQGPISYGSCQFPTLGFVVDRYLRVQNFK 235
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PEP+W + + + + V+ W R +FD++ V + K V V SK +
Sbjct: 236 PEPFWAIAVVHKRDDINVNFNWRRVRLFDRAAVTVMLERCLDAKDAKVTKVTKKPTSKWR 295
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TV+L + S L M H MQIAE LYT+G++SYPRTET Q+ + DL ++ +Q
Sbjct: 296 PLPLTTVDLQMMGSKYLRMTSHQVMQIAETLYTRGFISYPRTETDQFDKAIDLKKLIEKQ 355
Query: 353 ESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
WG + + +L PR GK+ HPPI P + L + R++D++VR F
Sbjct: 356 VPDRTWGQYAQGLLDGNFRTPRAGKNNDQAHPPIHPICAVAPSALKDEEKRVFDFVVRRF 415
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES-IPDFKPGDLI 470
+ D + DE F + +L + + + ++ + +P F+ G++
Sbjct: 416 LACCSDDAKGQTSEVEIQYGDEYFHAKGLIVLERNYLDIYVYDKWESSTQLPHFEVGEVF 475
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV------- 523
K+ E KTTPP YLTE ELI+LM+ +GIGTDA++ HIN I +R YV
Sbjct: 476 EPTEAKITEGKTTPPTYLTEPELIALMDANGIGTDATMAEHINKIKERQYVAARPRTGAS 535
Query: 524 ------------------TSGRRLVPTSLGIVLVHGYQKI 545
T + L+PT LG+ LV GY +
Sbjct: 536 NNEAGGRGRGRGRAAGGNTGVQELIPTRLGVALVEGYDNV 575
>gi|330804855|ref|XP_003290405.1| hypothetical protein DICPUDRAFT_37309 [Dictyostelium purpureum]
gi|325079456|gb|EGC33055.1| hypothetical protein DICPUDRAFT_37309 [Dictyostelium purpureum]
Length = 831
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 182/524 (34%), Positives = 275/524 (52%), Gaps = 28/524 (5%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
TSV GH+M D +Y W+ +P++LF P K + KL + L E K C+ L+L
Sbjct: 54 FTSVTGHLMETDVDERYKPWNSCEPIKLFEVPIRKIVSHDKLNIKQQLETEIKKCDVLIL 113
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKT---VWRARFSAITDKDIKAAMWNLVKPNIF 169
WLDCD+EGENI FEV++ NS K V+RA FSAI +++ A+ NL +PN
Sbjct: 114 WLDCDREGENIAFEVLQVC------NSAKKRFKVYRAIFSAIIPREVNRAIANLKEPNEK 167
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDA--------SLISYGPCQTPTLGFC 221
++ +VD R E+DLR+G AFTR+QT + + D S+ISYGPCQ PTLGF
Sbjct: 168 DSIAVDTRIEIDLRLGAAFTRFQTLYLKKFQLDQPQPTQQQQQKSIISYGPCQFPTLGFV 227
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLN--------GVAVSVTWSRGHIFDKSTCNVFFKAVE 273
VER+ + F E +W +++ N V +W R +FD ST + ++
Sbjct: 228 VERYFRKTNFVREDFWTVNVYDNRRIETNNDDRPSEVVFSWKRKRLFDYSTAYILYEKCL 287
Query: 274 KEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333
VVD+ ++ SK +P L T+EL + AS L + M IAE LY +G +SYPR
Sbjct: 288 DNPQAVVVDI-NTNDSKYRPLPLTTIELQKQASKKLRISSSDTMAIAEDLYNKGLISYPR 346
Query: 334 TETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLAT 392
TET + + D ++ Q S P WG + + + + PR G + + HPPI PT A
Sbjct: 347 TETDTFQQGTDFRGLIGIQGSHPQWGQYAQRLNNGEFKYPRSGTNNDNSHPPIHPT-AAC 405
Query: 393 RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
+ L + ++Y++I R F+ + V + E F + G+ V
Sbjct: 406 PSTLPDRSKKVYEFITRRFLACCSTESVLGNTSVTIEIEGEQFVETGVMVKEWGYLEVYP 465
Query: 453 WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHI 512
+ N++IP ++ G+ ++ +++ T PP +LTESEL+S M+K+ IGTDA++ HI
Sbjct: 466 YDKRSNKTIPKYRKGERFQVKRIELYNGTTQPPHFLTESELLSAMDKNKIGTDATMATHI 525
Query: 513 NNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
I R YV + PT LGI LV Y+ + + +P +R+
Sbjct: 526 QTIQDRGYVIKNQESQFEPTKLGISLVASYELMGFQFSKPELRA 569
>gi|320034640|gb|EFW16583.1| DNA topoisomerase 3-beta [Coccidioides posadasii str. Silveira]
Length = 634
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 184/524 (35%), Positives = 273/524 (52%), Gaps = 33/524 (6%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLA 101
GP +G+ + MTSV GH+ LDF S++ +W P +LF P K+ + +
Sbjct: 48 GPPWGNSSV-TMTSVIGHLTALDFESEWRHWQSCPPGQLFDAPVVNDVDKDKIGIAENIR 106
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS----AITDKDIK 157
N+A+ + L +W DCD+EGE+I EV + N V RA+F+ A+ ++ I
Sbjct: 107 NKARQADALFIWTDCDREGEHIGSEVRT---QAVGANPRIEVKRAKFTRNPIALDERQIN 163
Query: 158 AAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPT 217
A V AR ELDLRIG AFTR T G L LISYG CQ PT
Sbjct: 164 A---------------VAARIELDLRIGAAFTRLLTLQLGALGGALSERLISYGSCQFPT 208
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKH 277
LGF V+R+ +++ FKPEPYW + +T +G V+ TWSRG++FD++ + F+ K
Sbjct: 209 LGFVVDRYFRVKNFKPEPYWSIKVTHARDGKTVNFTWSRGNLFDRAAVVMIFERCLTAKT 268
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V V K +P L TV+L + S L M M++AE LYT+G++SYPRTET
Sbjct: 269 AKVTKVNKKPTKKWRPLPLTTVDLQMMGSKFLRMDSQKVMKVAESLYTKGFISYPRTETD 328
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQL 396
Q+ + DL ++ +Q WG + + +++ G +PR G+ + HPPI P + L
Sbjct: 329 QFDKGIDLKKLIEKQIQDGVWGQYSQGLMAGGFKQPRSGRHNDQAHPPIHPVTYVAPSVL 388
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM 456
D R+Y+++VR F+ D DE F + +L + + +
Sbjct: 389 TADERRVYEFVVRRFLACCSDDAKGETSEVDIQYGDEKFHAQGLIVLERNYLDIYVYDKW 448
Query: 457 K-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNI 515
+ ++ +P F G++ + K+ E KTTPP+YLTE ELI LM+ +GIGTDA++ HI I
Sbjct: 449 ESSQELPKFTVGEVFEPKEAKITEGKTTPPNYLTEPELIGLMDANGIGTDATMAEHIFKI 508
Query: 516 CQRNYVTVT----SGR----RLVPTSLGIVLVHGYQKIDRELVE 551
R YV +GR +PT LG+ LV GY + +L +
Sbjct: 509 KDRQYVATRRRGGNGRNSVEEFIPTKLGVALVEGYDNLVLDLAD 552
>gi|261203873|ref|XP_002629150.1| DNA topoisomerase III [Ajellomyces dermatitidis SLH14081]
gi|239586935|gb|EEQ69578.1| DNA topoisomerase III [Ajellomyces dermatitidis SLH14081]
Length = 632
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 182/507 (35%), Positives = 266/507 (52%), Gaps = 18/507 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ LDF S+Y +W+ P LF P A KL + + A+ + L +
Sbjct: 58 MTSVIGHLTSLDFDSQYRSWNSCPPGRLFDAPVTDSVAKDKLSIAENIRTLARQSKALFI 117
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I EV R+Q +P+ V RARFS I A N ++ + +A
Sbjct: 118 WTDCDREGEHIGTEV----RYQARKANPRIEVKRARFSNTERAHILQAAQNPIELDDSQA 173
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISY--GPCQTPTLGFCVERHDKIR 229
+V AR ELDLRIG AFTR QT + G L+ +ISY G CQ PTLGF V+R+ +++
Sbjct: 174 NAVAARIELDLRIGAAFTRLQTLQLKSLGGALEDRVISYVSGSCQFPTLGFVVDRYFRVK 233
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKS 289
FKPE +W + ++ +G V+ W R H+FD++ V F+ K V V
Sbjct: 234 NFKPEKFWSIKVSHARDGKTVNFLWRRVHLFDRAAVVVLFERCLTSKTAKVTKVNKKPTR 293
Query: 290 KTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL 349
K +P L TV+L + S L M M+IAE LYT+G++SYPRTET Q+ + DL ++
Sbjct: 294 KWRPLPLTTVDLQMMGSRYLRMDSQKVMKIAEALYTKGFISYPRTETDQFDKGIDLKKLV 353
Query: 350 RQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIV 408
+Q S +WG + + +++ +PR G+ + HPPI P A + L+ D +Y+++
Sbjct: 354 EKQIPSENWGQYAQRLMNGAFIQPRAGRHNDKAHPPIHPVIFAAPSALNADERAVYEFVT 413
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPG 467
R F+ D + DEMF +L + V + + ++ IP F G
Sbjct: 414 RRFLACCSEDAKGESTEVEIKYGDEMFHTNGLLVLERNYLDVYIYDKWESSQEIPPFTLG 473
Query: 468 DLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV---- 523
+ K+ + KT P YLTE ELI LM+ +GIGTDA++ HI I +R YV
Sbjct: 474 EAFEPTEAKLTDGKTVAPGYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVATRPRG 533
Query: 524 -----TSGRRLVPTSLGIVLVHGYQKI 545
S + +PT LG+ LV GY +
Sbjct: 534 SGGGSNSVQEFIPTHLGVALVEGYDDV 560
>gi|70989103|ref|XP_749401.1| DNA topoisomerase III [Aspergillus fumigatus Af293]
gi|66847032|gb|EAL87363.1| DNA topoisomerase III, putative [Aspergillus fumigatus Af293]
gi|159128816|gb|EDP53930.1| DNA topoisomerase III, putative [Aspergillus fumigatus A1163]
Length = 629
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 182/502 (36%), Positives = 262/502 (52%), Gaps = 12/502 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+M LDF S+Y +W P LF P + + + +A+ + L +
Sbjct: 59 MTSVLGHLMALDFESQYKSWLSCPPGALFEAPVREFVEEDNKPIAENIKEQARMSKALFI 118
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I EV + + N V RARFS + A L + +A
Sbjct: 119 WTDCDREGEHIGTEVRKKAKEG---NQRILVKRARFSNTERAHVLRAARALTDVDENQAN 175
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V AR ELDLRIG AFTR Q+ Q DL LISYG CQ PTLGF V+R+ +++ FK
Sbjct: 176 AVAARIELDLRIGAAFTRLQSLQLQRMCADLSNKLISYGSCQFPTLGFVVDRYLRVKNFK 235
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE +W + + V+ W R H+FD++ V + K V V SK +
Sbjct: 236 PETFWGIKVVHVQERKKVNFLWRRVHLFDRAAVTVMLERCLLAKTAKVTKVNQKPTSKWR 295
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TV+L + S L M M+ AE LYT+GY+SYPRTET Q+ + DL ++ +Q
Sbjct: 296 PLPLTTVDLQMMGSRYLRMDSSAVMKAAESLYTKGYISYPRTETDQFDKGIDLKKLIEKQ 355
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
+WG++ R +++ PR G+ + HPPI P + + L+ D ++Y+++VR F
Sbjct: 356 YPDTNWGEYARGLINGAFKTPRSGRHNDRAHPPIHPVCWVSPSALNSDEKKVYEFVVRRF 415
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLI 470
+ D + DEMF +L + V + + ++ +P+F+ G++
Sbjct: 416 LACCSDDAKGQSTEIEIQYGDEMFHANGLIVLEKNYLEVYIYDKWESSQQLPNFRVGEVF 475
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV---TSGR 527
M E KTT P+YLTE ELI LM+ +GIGTDA++ HI I +R YV V SGR
Sbjct: 476 VPTEANMFEGKTTAPNYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVAVHSRGSGR 535
Query: 528 ----RLVPTSLGIVLVHGYQKI 545
+PT LGI LV GY +
Sbjct: 536 NAVKEFIPTRLGIALVEGYDNV 557
>gi|119498155|ref|XP_001265835.1| DNA topoisomerase III, putative [Neosartorya fischeri NRRL 181]
gi|119413999|gb|EAW23938.1| DNA topoisomerase III, putative [Neosartorya fischeri NRRL 181]
Length = 571
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 182/502 (36%), Positives = 262/502 (52%), Gaps = 12/502 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+M LDF S+Y +W P LF P + K + + +A+ L +
Sbjct: 1 MTSVLGHLMALDFESQYKSWLSCPPGALFEAPVREFVEEDKKPIAENIKEQARMSRALFI 60
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I EV + + N V RARFS + A L+ + +A
Sbjct: 61 WTDCDREGEHIGTEVRKKAKEG---NQRILVKRARFSNTERAHVLRAARALIDVDENQAN 117
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V AR ELDLRIG AFTR Q+ Q DL LISYG CQ PTLGF V+R+ +++ FK
Sbjct: 118 AVAARIELDLRIGAAFTRLQSLQLQRMCADLANKLISYGSCQFPTLGFVVDRYLRVKNFK 177
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE +W + + V+ W R H+FD++ V + K V V SK +
Sbjct: 178 PETFWGIKVVHVQERKKVNFLWRRVHLFDRAAVTVMLERCLLAKTAKVTKVNQKPTSKWR 237
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TV+L + S L M M+ AE LYT+GY+SYPRTET Q+ + DL ++ +Q
Sbjct: 238 PLPLTTVDLQMMGSRYLRMDSSAVMKAAESLYTKGYISYPRTETDQFDKGIDLKKLIEKQ 297
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
+WG++ R +++ PR G+ + HPPI P + + L+ D ++Y+++VR F
Sbjct: 298 YPDTNWGEYARGLINGAFKTPRSGRHNDRAHPPIHPVCWVSPSALNSDEKKVYEFVVRRF 357
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLI 470
+ D + DE F +L + V + + ++ +P+F+ G++
Sbjct: 358 LACCSDDAKGQSTEIEIQYGDEKFHANGLVVLEKNYLEVYVYDKWESSQQLPNFRVGEVF 417
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV---TSGR 527
M E KTT P+YLTE ELI LM+ +GIGTDA++ HI I +R YV V SGR
Sbjct: 418 VPTEANMFEGKTTAPNYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVAVHSRGSGR 477
Query: 528 ----RLVPTSLGIVLVHGYQKI 545
+PT LGI LV GY +
Sbjct: 478 NAVKEFIPTRLGIALVEGYDNV 499
>gi|322707318|gb|EFY98897.1| DNA topoisomerase III [Metarhizium anisopliae ARSEF 23]
Length = 680
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 186/573 (32%), Positives = 283/573 (49%), Gaps = 73/573 (12%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR--------------------EATP 92
MT V GH+ ++FTS+Y NW P LF+ P +
Sbjct: 55 MTCVTGHLTNVEFTSEYKNWSYPPPETLFNAPIVTSIHDVCVDAYVNHSGFVANCLDNQD 114
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT 152
K + LA++A+ LV+W DCD+EGE+I E+++A R N+ V RA+FS +
Sbjct: 115 KKSIAKNLADQAQYARLLVIWTDCDREGEHIGQEIVDAARKG---NASIQVKRAKFSNVE 171
Query: 153 DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGP 212
+ +A LV + + +V R ELDLRIG AFTR+ T + G +++ +SYG
Sbjct: 172 RAHVLSAARRLVDLDKKQVDAVSTRIELDLRIGYAFTRFMTNSLRPLGGPMESLTLSYGS 231
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAV 272
CQ PTLGF V+R+ +++ F PEP+W + L N +G V+ +W R +FD+ T + ++
Sbjct: 232 CQFPTLGFVVDRYFRVKNFIPEPFWSISLMHNRDGKKVNFSWERNRLFDRMTTIILYERC 291
Query: 273 EKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYP 332
K V++VQ K KP L TVEL + A+ L M AM +AE LY +G++SYP
Sbjct: 292 LLAKTAKVINVQERATRKYKPLPLTTVELQKAATRLLRMSGQQAMMVAEGLYNKGFISYP 351
Query: 333 RTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLA 391
RTET ++ + +L ++++Q WG + +++ +PR+G+ D HPPI P A
Sbjct: 352 RTETDRFDKGMNLKGLVQKQSPDQRWGQFAQNLVNGAFKQPREGRHDDKAHPPIHPITYA 411
Query: 392 TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
+ L D RLY+Y+VR F+ D + DE+F +L + V
Sbjct: 412 APSVLSPDEGRLYEYVVRRFLACCSEDALGMATTVDLQYGDEIFGSHGVIVLERNYLDVF 471
Query: 452 TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
+ N +P F G++ M ERKT+PP +LTE++LI+LM+ +GIGTDA++ H
Sbjct: 472 VYDKWDNNELPRFVRGEVFQPTEAIMSERKTSPPSHLTEADLIALMDANGIGTDATMAEH 531
Query: 512 INNICQRNYV------------------------------------------TVTSGRR- 528
I I R YV T +SGRR
Sbjct: 532 IQKIQDREYVATVGNSATIASEDDDGVQDRASSGRGRGRARARGGRAARGTSTSSSGRRG 591
Query: 529 ----LVPTSLGIVLVHGYQKIDRE--LVEPTMR 555
+PT LG+ L+ GY ++ E L +P +R
Sbjct: 592 GVRVFIPTQLGVALILGYDRMGFETSLGKPFLR 624
>gi|255726540|ref|XP_002548196.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134120|gb|EER33675.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 619
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 179/517 (34%), Positives = 278/517 (53%), Gaps = 17/517 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GHI GLDF ++ W +LF E K + +ANEA+ + L++
Sbjct: 55 MTSVVGHITGLDFPPEFG-WGCCAAGKLFDAALT--EIVDKADVYDNIANEARRIDKLMI 111
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I FE+ A + VWRA+FS + + A N +K ++
Sbjct: 112 WTDCDREGEYIGFEIFNAAKKFNQSLGLSQVWRAKFSHLERNHVIQAAKNPIKLDMRAVA 171
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V R E+D R+G +FTR T + + + SYG CQ PTLGF V+R+ +++ FK
Sbjct: 172 AVSCRMEIDFRVGTSFTRLLTDTLKARGIIGKGEVASYGTCQFPTLGFVVDRYKRVKRFK 231
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFF-KAVEKEKHVTVVDVQSSTKSKT 291
PEP+W +++ +W RGH FD+ + + K + + + ++S K+
Sbjct: 232 PEPFWYIEVETMKENKKTVFSWVRGHFFDRQYVALLYDKCCKSGEDGIISKLESKRKNNF 291
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
KP L TVEL + + M A+ AE+LY +G++SYPRTET ++P+ + +L+Q
Sbjct: 292 KPFPLTTVELQKDCAKFFKMSAKQALDAAEKLYNKGFISYPRTETDRFPKETNFQGLLQQ 351
Query: 352 QESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQL-DGDAWRLYDYIVR 409
Q SP WG + ++LS+G PR G D HPPI P K + L + ++Y+Y+VR
Sbjct: 352 QTQSPGWGSYTTQLLSDGFVTPRSGSHDDHAHPPIHPIKYGVGSALGNAQEQKIYEYVVR 411
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM---TWSAMKNESIPDFKP 466
FI D V TQ DE FT +L + V W++ ++ +P+F
Sbjct: 412 RFIACCSKDAVGTQTSVTMKWGDEFFTANGLIVLEQNYLEVYPYRKWNS--SQELPNFTE 469
Query: 467 GDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT-S 525
GD + + E KT+ P+Y+TE ELI+LM+ +GIGTDA+I HI+ I +R Y+ +
Sbjct: 470 GDRVALSKGVQKEGKTSAPNYMTEPELIALMDVNGIGTDATIAEHIDKILRRGYIAKSKK 529
Query: 526 GRR--LVPTSLGIVLVHGYQKI---DRELVEPTMRSA 557
G++ +VP++LG+ L+ G+ K+ D L +P +R A
Sbjct: 530 GQKEYIVPSALGMGLIEGFDKMEFRDVSLSKPFLRKA 566
>gi|212527998|ref|XP_002144156.1| DNA topoisomerase III, putative [Talaromyces marneffei ATCC 18224]
gi|210073554|gb|EEA27641.1| DNA topoisomerase III, putative [Talaromyces marneffei ATCC 18224]
Length = 662
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 182/520 (35%), Positives = 265/520 (50%), Gaps = 30/520 (5%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ GL+F +Y W P LF P + T KL + + +A+ C+ L +
Sbjct: 59 MTSVIGHLTGLEFGKEYKGWTSCPPSLLFEVPVFENVDTDKLSIAENIKKQAQYCKALFI 118
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I EV + R N+ V RARFS + A ++ + +A
Sbjct: 119 WTDCDREGEHIGTEVKKQARLG---NARIEVKRARFSNTERAHVLRAAREPIELDEKQAS 175
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V AR ELDLR+G AFTR QT Q LD ISYG CQ PTLGF V+R+ +++ FK
Sbjct: 176 AVAARIELDLRVGAAFTRLQTLQLQTLGSPLDQGPISYGSCQFPTLGFVVDRYLRVQNFK 235
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PEP+W + + + + V+ W R +FD++ V + K+ V V SK +
Sbjct: 236 PEPFWAIAVIHKRDDINVNFNWRRVRLFDRAAVTVMLERCLDAKNAKVTKVTKKPTSKWR 295
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TV+L + S L M H MQIAE LYT+G++SYPRTET Q+ + DL ++ +Q
Sbjct: 296 PLPLTTVDLQMMGSKYLRMTSHQVMQIAETLYTRGFISYPRTETDQFDKAIDLKKLIEKQ 355
Query: 353 ESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
WG + + +L PR GK+ HPPI P + L + R++D++VR F
Sbjct: 356 VPDRTWGQYAQGLLDGNFRTPRAGKNNDQAHPPIHPICAVGSSALKDEEKRVFDFVVRRF 415
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES-IPDFKPGDLI 470
+ D + DE F + +L + + + ++ + +P F+ ++
Sbjct: 416 LACCSEDAKGQTSEVEIQYGDEYFHAKGLIVLERNYLDIYVYDKWESSTQLPHFEVDEVF 475
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV------- 523
K+ E KTTPP YLTE ELI+LM+ +GIGTDA++ HIN I +R YV
Sbjct: 476 EPTEAKITEGKTTPPTYLTEPELIALMDANGIGTDATMAEHINKIKERQYVAARPHTGGG 535
Query: 524 ------------------TSGRRLVPTSLGIVLVHGYQKI 545
T + L+PT LG+ LV GY +
Sbjct: 536 NNEAGGRGRGRGRAAASNTGVQELIPTRLGVALVEGYDNV 575
>gi|378729744|gb|EHY56203.1| DNA topoisomerase III [Exophiala dermatitidis NIH/UT8656]
Length = 625
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 180/516 (34%), Positives = 267/516 (51%), Gaps = 17/516 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ LDF +Y +W P +LF T K + + +A+ L +
Sbjct: 58 MTSVLGHLTALDFDPRYKSWKSCPPSQLFDATTLVTIDKDKKPIADNIQQQARYARILFI 117
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I EV R Q +P V RA+FS + A + + + +
Sbjct: 118 WTDCDREGEHIGGEV----RDQAKKGNPNILVKRAKFSNTERAHVIQAAHSPIDMDERQV 173
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V AR ELDLRIG +FTR Q+ Q +L +ISYG CQ PTLGF V+R++++R F
Sbjct: 174 SAVAARIELDLRIGASFTRLQSLELQCLSENLRDKMISYGSCQFPTLGFVVDRYNRVRNF 233
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
KPE +W + L G+ V+ W R H+FD++ + F+A K+ V VQ+ SK
Sbjct: 234 KPELFWSIKLVQVRAGIKVNFNWRRVHLFDRAVVTILFEACLDAKYARVTKVQTKPTSKW 293
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
+P L TVEL ++ S L M H M +AE+LYT+G++SYPRTET Q+P+ F ++ +
Sbjct: 294 RPLPLTTVELQKLGSRFLHMTSHQVMSVAEKLYTKGFISYPRTETDQFPQGFGFQPIIER 353
Query: 352 QESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRH 410
Q WG + + +L G PR G + HPPI P A + LD ++Y+++ R
Sbjct: 354 QTRDDRWGRYAQGLLDGGFRTPRSGSHNDQAHPPIHPVNYAAPSALDQHEKKVYEFVTRR 413
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDL 469
F+ D + EMF + + V + + ++ +P F G+
Sbjct: 414 FLACCSEDAKGEATDIELLWGTEMFHTHGLLVRERNYLDVYVYDKWESSQQLPIFTVGET 473
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV------ 523
M E KTT P YLTE ELI+LM+ +GIGTDA++ HI I R+YV
Sbjct: 474 FEPTEANMAEGKTTAPGYLTEPELITLMDANGIGTDATMAEHIAKIKDRSYVDTRPRSGG 533
Query: 524 --TSGRRLVPTSLGIVLVHGYQKI--DRELVEPTMR 555
S + +PT+LG+ L+ GY + D + +P +R
Sbjct: 534 GRNSVQEFIPTTLGVALIEGYDNVGLDVSVSKPFLR 569
>gi|310791677|gb|EFQ27204.1| DNA topoisomerase [Glomerella graminicola M1.001]
Length = 664
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 175/474 (36%), Positives = 256/474 (54%), Gaps = 5/474 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MT+V GH+ GL+FT + NW P LF+ P K + + +A+ C+ L++
Sbjct: 55 MTAVLGHLTGLEFTDENKNWSHPPPESLFTAPVVTVVPQDKKTVAENIERQARYCQLLII 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I E++ A + N+ V RA FS I I A L + +
Sbjct: 115 WTDCDREGEHIGKEIVNAAKKG---NNRIAVKRATFSNIERAHILTAARRLTDLDQKQVD 171
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+VDAR ELDLRIG AFTR+ T + G L ISYG CQ PTLGF V+R+ +++ F
Sbjct: 172 AVDARIELDLRIGYAFTRFLTISLRPLGGPLQERTISYGSCQFPTLGFVVDRYFRVQNFV 231
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE +W + + + G V+ WSR +FD+ + + ++ + K V VQ K K
Sbjct: 232 PEQFWSIKVMHSREGKKVNFNWSRNRLFDRMSVVILYERCIRAKKAKVTKVQEKPTRKWK 291
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TVEL + A+ L M AM IAE LY +G++SYPRTET ++ + DL A++R+Q
Sbjct: 292 PLPLTTVELQKAATRLLRMSGQQAMTIAEGLYNKGFISYPRTETDRFDKGMDLKALVRKQ 351
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
S WG+H + +L + +PR+GK D HPPI P A T L+ D +LY+Y+VR F
Sbjct: 352 TSDNRWGEHAQGLLDSNFHQPREGKHDDKAHPPIHPVTYAAPTVLNPDEKQLYEYVVRRF 411
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES-IPDFKPGDLI 470
+ D + +E F +L + V + + + +P F PG+
Sbjct: 412 LACCSDDAKGLATDVEILYGEETFHARGLVVLERNYLDVFVYEKWNDSAQLPQFTPGESF 471
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
M + KT+PP YLTE++LI+LM+ +GIGTDA++ HI I R YV +
Sbjct: 472 QPTEAMMTDGKTSPPGYLTEADLIALMDANGIGTDATMAEHIQKIQDREYVQLA 525
>gi|238880879|gb|EEQ44517.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 629
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 183/515 (35%), Positives = 276/515 (53%), Gaps = 13/515 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GHI GLDF S ++ W P LF E K + +A EA++ + L++
Sbjct: 55 MTSVAGHITGLDFGSAFS-WGNCVPGRLFEADIET--IITKKSIYENIAEEARNADKLMI 111
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I FE+M A R +WRARFS + I A N V ++
Sbjct: 112 WTDCDREGEYIGFEIMNAARKYNRNLGLNNIWRARFSHLERNHIIRAAKNPVNLDMSAVS 171
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V R E+DLR+G +FTR T + K L SYG CQ PTLGF V+R+ ++++F
Sbjct: 172 AVSCRMEIDLRVGTSFTRLLTDQLRQKGIIEKNELASYGTCQFPTLGFVVDRYKRVKSFT 231
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFF-KAVEKEKHVTVVDVQSSTKSKT 291
PEP+W +++ W RGH FDK + + + + + T+ ++S K
Sbjct: 232 PEPFWYIEIETRKENKKTIFNWVRGHFFDKMYVVMLYDRCCKSGEFGTISKIESKRKPNF 291
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
+P L TVEL + + M A+ AERLY GY+SYPRTET ++ + D ++L
Sbjct: 292 RPFPLTTVELQKDCARFFKMSAKTALAAAERLYNLGYLSYPRTETDRFAKETDFKSLLEV 351
Query: 352 QESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDG-DAWRLYDYIVR 409
+ P WG + ++L+ G PR G D HPPI P K + L+ D ++Y+Y+VR
Sbjct: 352 HKQDPRWGSYTTKLLNEGFETPRSGSHDDKAHPPIHPIKYVSLDTLNTLDEKKVYEYVVR 411
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGD 468
FI D V TQ V DE FT + + V T+ + ++ +P F G+
Sbjct: 412 RFIACCSKDAVGTQTVVTLKWGDEFFTASGLMVHEKNYLEVYTYKKWESSKQLPKFTEGE 471
Query: 469 LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV-TVTSGR 527
+ + S + + KT+PP+++TE ELI+LM+ +GIGTDA+I HIN I R+Y+ + G+
Sbjct: 472 QVKLSSGVLKDGKTSPPNHMTEPELIALMDANGIGTDATIAEHINKIETRHYIDKLKKGK 531
Query: 528 R--LVPTSLGIVLVHGYQKIDRE---LVEPTMRSA 557
++PT LG+ L+ G +K++ E L +P +R +
Sbjct: 532 NEYILPTPLGMGLIEGLEKMEFEDVSLSKPFLRKS 566
>gi|392351278|ref|XP_002742497.2| PREDICTED: DNA topoisomerase 3-alpha [Rattus norvegicus]
Length = 977
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 195/558 (34%), Positives = 290/558 (51%), Gaps = 36/558 (6%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSNGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETQHCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT ++AA +L +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCK---AVKPNLQVLRARFSEITHHAVRAACEHLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHR 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IKVTHDHKDGTVEFNWKRYRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQG +Q P + ++
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQG--------VSQQPAHLGILMKFXXXXXXXXX 381
Query: 359 GDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGD 418
PI PTK + L GD RLY++IVRHF+ D
Sbjct: 382 XXXXXXXX-----------------PIHPTKYT--SSLQGDDRRLYEFIVRHFLACCSQD 422
Query: 419 LVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMV 478
+ + +A E F +L + V + ++ +P ++ G +V+MV
Sbjct: 423 AQGQETTVEIDIAQERFVAHGLIILARNYLDVYPYDHWSDKLLPVYEQGFRFQPSTVEMV 482
Query: 479 ERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +TS +R +P LG+ L
Sbjct: 483 DGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHLGMGL 542
Query: 539 VHGYQKIDRELVEPTMRS 556
V GY + E+ +P +R+
Sbjct: 543 VEGYDSMGYEMSKPNLRA 560
>gi|119194847|ref|XP_001248027.1| hypothetical protein CIMG_01798 [Coccidioides immitis RS]
Length = 634
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 183/524 (34%), Positives = 273/524 (52%), Gaps = 33/524 (6%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLA 101
GP +G+ + MTSV GH+ LDF S++ +W P +LF P K+ + +
Sbjct: 48 GPPWGNSSV-TMTSVIGHLTALDFESEWRHWQSCPPGQLFDAPVVNDVDKDKIGIAENIR 106
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS----AITDKDIK 157
N+A+ + L +W DCD+EGE+I EV + N V RA+F+ A+ ++ I
Sbjct: 107 NKARQADALFIWTDCDREGEHIGSEVRT---QAVGANPRIEVKRAKFTRNPIALDERQIN 163
Query: 158 AAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPT 217
A V AR ELDLRIG AFTR T G L LISYG CQ PT
Sbjct: 164 A---------------VAARIELDLRIGAAFTRLLTLQLGALGGALSERLISYGSCQFPT 208
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKH 277
LGF V+R+ +++ FKPEP+W + +T +G V+ TWSRG++FD++ + F+ K
Sbjct: 209 LGFVVDRYFRVKNFKPEPFWSIKVTHARDGKTVNFTWSRGNLFDRAAVVMIFERCLTAKT 268
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V V K +P L TV+L + S L M M++AE LYT+G++SYPRTET
Sbjct: 269 AKVTKVNKKPTKKWRPLPLTTVDLQMMGSKFLRMDSQKVMKVAESLYTKGFISYPRTETD 328
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQL 396
Q+ + DL ++ +Q WG + + +++ G +PR G+ + HPPI P + L
Sbjct: 329 QFDKGIDLKKLIEKQIQDGVWGQYSQGLMAGGFKQPRSGRHNDQAHPPIHPVTYVAPSVL 388
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM 456
D R+Y+++VR F+ D DE F + +L + + +
Sbjct: 389 TADERRVYEFVVRRFLACCSDDAKGETSEVDIQYGDEKFHAQGLIVLERNYLDIYVYDKW 448
Query: 457 K-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNI 515
+ ++ +P F G++ + K+ E KTTPP+YLTE ELI LM+ +GIGTDA++ HI I
Sbjct: 449 ESSQELPKFTVGEVFEPKEAKITEGKTTPPNYLTEPELIGLMDANGIGTDATMAEHIFKI 508
Query: 516 CQRNYVTVT----SGR----RLVPTSLGIVLVHGYQKIDRELVE 551
R YV +GR +PT LG+ LV GY + +L +
Sbjct: 509 KDRQYVATRRRGGNGRNSVEEFIPTKLGVALVEGYDNLVLDLAD 552
>gi|403364238|gb|EJY81876.1| DNA topoisomerase [Oxytricha trifallax]
Length = 955
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 178/519 (34%), Positives = 283/519 (54%), Gaps = 16/519 (3%)
Query: 50 LFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEF 109
L ++TSV GH+M F NW + +L+ EK +++ + +D +
Sbjct: 53 LLRVTSVLGHVMSYKFPDSCKNWQNTNYDQLYEIDLEKYVIENNVQVVKNVQAACRDVDE 112
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
L+LWLDCD+EGE I F+V++ + +N V RA FSA+T +DI+ A+ NLV PN
Sbjct: 113 LILWLDCDREGEAIAFDVIDIC---VKVNRRLKVLRAHFSALTREDIERAVQNLVPPNQN 169
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQG-KYGDLDAS--LISYGPCQTPTLGFCVERHD 226
+ +V RQE+DLRIG +FTR QT F+ G+ A ++SYGPCQ PTLGF VER
Sbjct: 170 LSDAVRVRQEIDLRIGASFTRLQTLNFRDIMLGNQQAQQLVLSYGPCQFPTLGFIVERFK 229
Query: 227 KIRTFKPEPYWLLDLTL---NLNGV--AVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV 281
IR FK E +W L+L L + +G V+ W R ++DK TC ++ +
Sbjct: 230 HIRDFKAEKFWQLNLKLLKRSNDGKLDEVNFGWERDRVYDKMTCLALYERCLDSGRAKIS 289
Query: 282 DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPE 341
++ S +++ +P LNT+E ++ S L + AM+I E+LY +G +SYPRTET +
Sbjct: 290 EINKSRRTRGRPNPLNTIEAQKLISRKLKIASAQAMEIMEKLYQRGILSYPRTETNTFNP 349
Query: 342 NFDLVAVLRQQESSPDWGDHVREVLSNGI-SKPRKGK-DVGDHPPITPTKLATRTQLDGD 399
+L ++ + S +GD + + + P+ GK D HPPI P K A++ L D
Sbjct: 350 TINLRNIVNELCKSEVFGDFAQRISDGSMWGGPKNGKQDDKAHPPIHPVKFASKQDLGFD 409
Query: 400 AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
WR+Y+ + RHF+ T+ D + + + S E F + + + V + +
Sbjct: 410 EWRVYELVARHFLATISKDAIGAETCIEVSCGGEQFQTKGLIIEEQNWLEVFPYEKWSDS 469
Query: 460 SIPDFKPGDLIPI--QSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQ 517
+P G+ + Q++K+ + +T PP LTE++LI+ M+++GIGTDA+I HI +I +
Sbjct: 470 YLPQLNKGESFEVNNQNLKIQDGETRPPPLLTEADLITKMDQNGIGTDATIHEHIKHIQE 529
Query: 518 RNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
R Y G+ +P+ LG LV Y+ + EL +P +R+
Sbjct: 530 RQYA-YKQGQTFLPSPLGTNLVEAYEHLGIELYKPYLRA 567
>gi|58259767|ref|XP_567296.1| DNA topoisomerase type I [Cryptococcus neoformans var. neoformans
JEC21]
gi|57229346|gb|AAW45779.1| DNA topoisomerase type I, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 828
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 188/524 (35%), Positives = 277/524 (52%), Gaps = 24/524 (4%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
F +T+V GH+ DF + W DP LF P + + L EA++ + L
Sbjct: 56 FTVTAVLGHLTSSDFDDDHRKWGSCDPFALFDAPVITFVDQKLKTVESNLQIEARNADIL 115
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
++W DCD+EGE+I EV+ A + +N V RARFSAI I A ++ +
Sbjct: 116 MIWTDCDREGEHIGSEVVAACK---KVNRNILVKRARFSAIIPAQIHQACRQANDLDMRQ 172
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
A +V R LDL++G AFTR T Q + DL LISYGPCQ PTLGF VE++ +++
Sbjct: 173 ADAVATRISLDLKVGSAFTRLTTMTLQVRVPDLAEQLISYGPCQFPTLGFVVEQYTRVQA 232
Query: 231 FKPEPYWLLDLTLNLNG-----VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS 285
F PE +W + + L V W R H+FD V ++ V+ V+S
Sbjct: 233 FVPETFWYIFVALEREHEDGEPSTVEFRWKRNHLFDLDLAAVLYEQCTVNPQTRVLKVES 292
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDL 345
+K KP L TVEL + S L M P + +AE+LY +G VSYPRTET QY FD
Sbjct: 293 KPATKWKPLPLTTVELQQSGSRLLHMTPKRILDLAEKLYQKGIVSYPRTETDQYDPKFDF 352
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLY 404
+++++Q WG + ++ SKPR G K+ HPPI PT A L+GD R++
Sbjct: 353 NSLIQKQTLDNQWGAYAQK------SKPRNGRKNDKAHPPIHPTAHA--GNLEGDERRVF 404
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
+ I R F+ + + + S+ADE+F+ +L + V + ++P+F
Sbjct: 405 ELITRRFLASCSTNAEGQNTTVEISIADEIFSTTGLVVLRRNYLEVYPYDKWATHALPNF 464
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
+ G++ + + E T+ P LTE++L+ LM+K+GIGTDA+I HI I +R YVT
Sbjct: 465 EEGEVFIPDVIDLKEGTTSRPSLLTEADLVGLMDKNGIGTDATIAEHIAKIIERGYVTEK 524
Query: 525 SGRR---LVPTSLGIVLVHGYQKI--DRELVEPTMR--SAYRVQ 561
R LVP++LGI LV G+ I DR L +P +R + +R+Q
Sbjct: 525 QEARIKYLVPSTLGIGLVEGFNAIGFDRSLSKPHLRRETEHRMQ 568
>gi|146415324|ref|XP_001483632.1| hypothetical protein PGUG_04361 [Meyerozyma guilliermondii ATCC
6260]
Length = 616
Score = 318 bits (814), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 176/518 (33%), Positives = 279/518 (53%), Gaps = 22/518 (4%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GHI +DF Y+ W+K P +LFS P E K + +ANEA++ L++
Sbjct: 54 MTSVLGHITNIDFPPAYS-WNKCVPGKLFSAPI--IEVVSKKDVYKNIANEARNASNLMI 110
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPK----TVWRARFSAITDKDIKAAMWNLVKPNI 168
W DCD+EGE I E+ +A + + +P+ +WR++FS + + A N VK ++
Sbjct: 111 WTDCDREGEFIGHEIFQAAQ----LGNPRLRVDEIWRSQFSHLERSHVLHAARNPVKLDL 166
Query: 169 FEARSVDARQELDLRIGCAFTRYQTKFFQ--GKYGDLDASLISYGPCQTPTLGFCVERHD 226
+V R E+DLR+G FTR+ + + G ++SYG CQ PTLGF V+R+
Sbjct: 167 NAVAAVGCRMEIDLRVGAGFTRFLSDLLKRSGAIPLEKGQVVSYGTCQFPTLGFVVDRYT 226
Query: 227 KIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSS 286
+++ F EP+W + + + + TW+ GH+FD + ++A + K TV + +
Sbjct: 227 RVKNFILEPFWHISIRVKKDDKIAPFTWTTGHVFDHLYVFLAYQACLQHKEATVTSITTK 286
Query: 287 TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLV 346
S +P L TVEL + SS M A+ AE+LY +G++SYPRTET ++P DL
Sbjct: 287 PTSNWRPLPLTTVELQKDCSSFFKMSAKRALDAAEKLYNKGFLSYPRTETDKFPATMDLR 346
Query: 347 AVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLD-GDAWRLY 404
+V++ Q WG++ E+L +PR G D HPPI P K + LD D ++Y
Sbjct: 347 SVIQTQSQDSQWGNYASELLQGKFRQPRAGNHDDKAHPPIHPVKYVALSALDSADEKKIY 406
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSA-MKNESIPD 463
+Y+VR F+ D Q A E F+ ++ + + + + +P+
Sbjct: 407 EYVVRRFLACCSDDARGNQTKAIVQWGAEKFSASGLAVIERNYLDIYVYKKWLSTVELPN 466
Query: 464 FKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV 523
F+ GD + + S ++ E KT+PP Y+TESELI+LM+ +GIGTDA+I HI+ I R YV
Sbjct: 467 FQQGDRVKLTSSQLQEGKTSPPKYMTESELIALMDANGIGTDATIADHIDKIINRGYVVK 526
Query: 524 T---SGRRLVPTSLGIVLVHGYQKIDRE---LVEPTMR 555
S ++P+ G+ L+ G+ I+ + L +P +R
Sbjct: 527 VKQGSTEYILPSEFGMGLIQGFDAIELDNISLSKPFLR 564
>gi|68465569|ref|XP_723146.1| likely DNA topoisomerase III [Candida albicans SC5314]
gi|68465862|ref|XP_722999.1| likely DNA topoisomerase III [Candida albicans SC5314]
gi|46445011|gb|EAL04282.1| likely DNA topoisomerase III [Candida albicans SC5314]
gi|46445167|gb|EAL04437.1| likely DNA topoisomerase III [Candida albicans SC5314]
Length = 629
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 182/515 (35%), Positives = 277/515 (53%), Gaps = 13/515 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GHI GLDF S ++ W P LF + + K + +A EA++ + L++
Sbjct: 55 MTSVAGHITGLDFGSAFS-WGNCVPGRLFE--ADIKTIITKKSIYENIAEEARNADKLMI 111
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I FE+M A R +WRARFS + I A N V ++
Sbjct: 112 WTDCDREGEYIGFEIMNAARKYNRNLGLNNIWRARFSHLERNHIIRAAKNPVNLDMSAVS 171
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V R E+DLR+G +FTR T + K L SYG CQ PTLGF V+R+ ++++F
Sbjct: 172 AVSCRMEIDLRVGTSFTRLLTDQLRQKGIIEKNELASYGTCQFPTLGFVVDRYKRVKSFT 231
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFF-KAVEKEKHVTVVDVQSSTKSKT 291
PEP+W +++ W RGH FDK + + + + + T+ ++S K
Sbjct: 232 PEPFWYIEIETRKENKKTIFNWVRGHFFDKMYVVMLYDRCCKSGEFGTISKIESKRKPNF 291
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
+P L TVEL + + M A+ AERLY GY+SYPRTET ++ + D ++L
Sbjct: 292 RPFPLTTVELQKDCARFFKMSAKTALAAAERLYNLGYLSYPRTETDRFAKETDFKSLLEV 351
Query: 352 QESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDG-DAWRLYDYIVR 409
+ P WG + ++L+ G PR G D HPPI P K + L+ D ++Y+Y+VR
Sbjct: 352 HKQDPRWGSYTTKLLNEGFETPRSGSHDDKAHPPIHPIKYVSLDTLNTLDEKKVYEYVVR 411
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGD 468
FI D V TQ V DE FT + + V T+ + ++ +P F G+
Sbjct: 412 RFIACCSKDAVGTQTVVTLKWGDEFFTASGLMVHEKNYLEVYTYKKWESSKQLPKFTEGE 471
Query: 469 LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT-VTSGR 527
+ + S + + KT+PP+++TE ELI+LM+ +GIGTDA+I HIN I R+Y+ + G+
Sbjct: 472 QVKLSSGILKDGKTSPPNHMTEPELIALMDANGIGTDATIAEHINKIETRHYINKLKKGK 531
Query: 528 R--LVPTSLGIVLVHGYQKIDRE---LVEPTMRSA 557
++PT LG+ L+ G +K++ E L +P +R +
Sbjct: 532 NEYILPTPLGMGLIEGLEKMEFEDVSLSKPFLRKS 566
>gi|392578148|gb|EIW71276.1| hypothetical protein TREMEDRAFT_73248 [Tremella mesenterica DSM
1558]
Length = 1002
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 178/518 (34%), Positives = 280/518 (54%), Gaps = 17/518 (3%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
F +T+V GH+ DF + W DP LF P T + L NEA+ + L
Sbjct: 56 FTVTAVLGHLTSSDFDENHRKWGSCDPFALFDAPILTYVDTKFKPVERNLINEARRADLL 115
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
++W DCD+EGE+I EV+ A R NS V RARFSAI I A + ++ +
Sbjct: 116 IIWTDCDREGEHIGSEVVAACRKG---NSRIRVKRARFSAIIPAQIHQACRSANDLDMKQ 172
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
A +V+AR LDLRIG AF+R T Q + +L +ISYGPCQ PTLGF V++++++++
Sbjct: 173 ADAVEARINLDLRIGAAFSRLVTLGLQNRVPELGQQVISYGPCQFPTLGFVVDQYNRVQS 232
Query: 231 FKPEPYWLLDLTLNLNGVA------VSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQ 284
F PEP+W + + + V W R H+FD V ++ +E V+ V+
Sbjct: 233 FVPEPFWYIYVAIQRQEEGEEEPSTVEFKWRRNHLFDMEAAFVLYERCVEEPMAKVIRVE 292
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD 344
+ +K KP L TVEL + S L M P + IAE+LY +G++SYPRTET QY FD
Sbjct: 293 TKPTTKWKPLPLTTVELQQSGSRLLQMTPKSVLDIAEKLYQKGFLSYPRTETDQYDSAFD 352
Query: 345 LVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRL 403
+++++Q WG +++L +PR G K+ HPPI PT A + L + ++
Sbjct: 353 FTSLIQKQTHDQVWGGFAQKLLDGEFQRPRNGKKNDKAHPPIHPTAHA--SNLSPEERKV 410
Query: 404 YDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPD 463
++ + R F+ + + + +ADE F+ + + V + + S+PD
Sbjct: 411 FELVTRRFLASCSSNAEGKTTTVEIVIADEYFSASGLVITRRNYLEVYHYDKWSSSSLPD 470
Query: 464 FKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV 523
F+ + ++ E T+ P+ LTE++L+ LM+++GIGTDA+I HI+ + +R YV
Sbjct: 471 FQENETFMPSICELKEGSTSRPNLLTEADLVGLMDRNGIGTDATIAEHISKVIERGYVKE 530
Query: 524 TSGRR---LVPTSLGIVLVHGYQKI--DRELVEPTMRS 556
+R LVP++LG+ LV G+ +I D+ L +P +R+
Sbjct: 531 RQEQRIKYLVPSTLGVGLVEGFNQIGFDKSLSKPQLRA 568
>gi|340059110|emb|CCC53485.1| putative DNA topoisomerase III, fragment [Trypanosoma vivax Y486]
Length = 782
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 152/318 (47%), Positives = 204/318 (64%), Gaps = 1/318 (0%)
Query: 240 DLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTV 299
+L LN +G ++ W RG +FD+ + + V K VVDV ++ +P ALNTV
Sbjct: 174 ELDLNRSGAQITFEWVRGRVFDELIARLLHQKVSHNKVGKVVDVSVGADTRARPTALNTV 233
Query: 300 ELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWG 359
ELM+VAS LG+GPHHAMQ+AE LY GY+SYPRTE+T YP +FD L Q E P WG
Sbjct: 234 ELMKVASKLLGIGPHHAMQLAENLYVSGYISYPRTESTAYPSSFDFKGALAQHERHPQWG 293
Query: 360 DHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDL 419
+V+ +L + ++P+ GKD GDHPPITP + A +L D+WRLY+YI RHFI TL D
Sbjct: 294 AYVQGLLKDRYTRPKAGKDAGDHPPITPMRAANPGELSSDSWRLYEYITRHFIATLSPDC 353
Query: 420 VYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP-DFKPGDLIPIQSVKMV 478
+ + E FT K + PGFT +++ A+K++ IP + + G P+ V++
Sbjct: 354 KLCKTKLVVELGGEFFTFTGKVVEDPGFTEILSHFAVKDDKIPTNIQVGSDFPMSDVRLQ 413
Query: 479 ERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
+T PP YLTES+LI +ME+HGIGTDASI H+NNI +R Y TV GR + PT LGIVL
Sbjct: 414 AGQTQPPGYLTESDLIGMMERHGIGTDASISQHVNNIVERGYCTVKPGRVMQPTKLGIVL 473
Query: 539 VHGYQKIDRELVEPTMRS 556
+HG + ID ELV P +RS
Sbjct: 474 IHGIKSIDPELVLPLVRS 491
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 96/157 (61%), Gaps = 5/157 (3%)
Query: 34 ACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPK 93
A V+E+ G G F +TS GHI DFT ++ +WD+ D LFS P +E + K
Sbjct: 33 ALPVYEYDGHFHGYPARFCVTSTTGHIFSCDFTPQHQSWDRTDEEVLFSAPVVWKEESGK 92
Query: 94 LKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITD 153
+ LA+EA+ C+ LVLWLDCD+EGENICFEVM+ V +I+ + +WRA+FSAIT
Sbjct: 93 VS--KHLAHEAEGCDTLVLWLDCDREGENICFEVMQVVAR--SIHDMRNIWRAKFSAITR 148
Query: 154 KDIKAAMWNLVKPNIFEARSVDARQELDL-RIGCAFT 189
+ I A NL +PN + +V RQELDL R G T
Sbjct: 149 EAITEAFRNLGRPNKHLSDAVSCRQELDLNRSGAQIT 185
>gi|401826074|ref|XP_003887131.1| topoisomerase IA [Encephalitozoon hellem ATCC 50504]
gi|392998289|gb|AFM98150.1| topoisomerase IA [Encephalitozoon hellem ATCC 50504]
Length = 723
Score = 317 bits (813), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 192/518 (37%), Positives = 280/518 (54%), Gaps = 16/518 (3%)
Query: 45 FGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEA 104
+GD ++F TSV GH++ DF K + WD++DP LF+ K K+ + EA
Sbjct: 41 YGDQMIF--TSVLGHLLSSDFERK-SRWDEIDPEMLFTERIVKFVHPDFAKIKENIEREA 97
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLV 164
+ +V+W DCD+EGENI ++ + V I+ V RARFS IT KDI+ A+ NL
Sbjct: 98 LRSDMVVIWTDCDREGENIGRQIRDIVLKVKKID----VKRARFSGITLKDIEGALKNLG 153
Query: 165 KPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVER 224
+ N EA +VD R ELDLRIG AFTR QT G G+ + ++S+GPCQ PTLGF VER
Sbjct: 154 EINEAEADAVDVRMELDLRIGSAFTRLQT-LSLGLSGE-EKKIVSFGPCQVPTLGFVVER 211
Query: 225 HDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQ 284
+ F PE +W L + TW RG +FDK+ F + +E E +V +
Sbjct: 212 AKERERFVPEMFWTLKFKAKNKKLEDEFTWRRGSVFDKNCVICFHRELEGE-SARIVLKE 270
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD 344
++K +P L TVEL + SS + H M+IAE LY +GY+SYPRTET + + FD
Sbjct: 271 IKERTKYRPLPLRTVELQKKCSSYFKLSGHKVMEIAEGLYNRGYISYPRTETDVFDKKFD 330
Query: 345 LVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKLATRTQLDGDAWRL 403
+L + G++ E L+ G + PR GK+ H PI P K T L G +
Sbjct: 331 FKYILNKLSRDSKVGEYA-ERLARGFNYPRNGKNNDMAHLPIYPLKEG--TGLSGGDRDI 387
Query: 404 YDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPD 463
YD+I R F+G + D + + + E+F + ++ + V + N + D
Sbjct: 388 YDFICRRFLGCISKDAKGLETRYELKIGMEVFDLNGIRVVERNYLEVYYYDKWDNREVSD 447
Query: 464 FKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV 523
F +L+P + + E +TT P YL+E+ELISLM+K+GIGTDA+I HI I +R Y T
Sbjct: 448 FAMEELVP-GDLYISEGETTAPKYLSEAELISLMDKNGIGTDATIHEHIQKIQERGYATK 506
Query: 524 TSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
G + P LG L+ GY++ + +P +R + +
Sbjct: 507 V-GEEIRPLGLGTALIDGYERFGLNVSKPELRKSLEIN 543
>gi|321258468|ref|XP_003193955.1| DNA topoisomerase type I [Cryptococcus gattii WM276]
gi|317460425|gb|ADV22168.1| DNA topoisomerase type I, putative [Cryptococcus gattii WM276]
Length = 923
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 189/524 (36%), Positives = 281/524 (53%), Gaps = 18/524 (3%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
F +T+V GH+ DF + W DP LF P + + L EA++ + L
Sbjct: 56 FTVTAVLGHLTSSDFDEDHRKWGSCDPFALFDAPVITFVDQKLKTVESNLQAEARNADIL 115
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
++W DCD+EGE+I EV+ A + +N V RARFSAI I A ++ +
Sbjct: 116 MIWTDCDREGEHIGSEVVAACK---KVNRNILVKRARFSAIIPAQIHQACRQANDLDMRQ 172
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
A +V R LDL+IG AFTR T QG+ DL LISYGPCQ PTLGF V+++++++
Sbjct: 173 ADAVATRISLDLKIGSAFTRLTTMTLQGRVPDLAEQLISYGPCQFPTLGFVVDQYNRVQA 232
Query: 231 FKPEPYWLLDLTL-----NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS 285
F PE +W + + L + V W R H+FD + ++ V+ V+S
Sbjct: 233 FVPEMFWYIFVALEREHEDGEPNTVEFRWKRNHLFDLDLAALLYEQCTINPQARVLKVES 292
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDL 345
+K KP L TVEL + S L M P + +AE+LY +G VSYPRTET QY FD
Sbjct: 293 KPATKWKPLPLTTVELQQSGSRLLHMTPKRILDLAEKLYQRGIVSYPRTETDQYDPKFDF 352
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLY 404
+++++Q WG + +++L KPR G K+ HPPI PT A LDGD R++
Sbjct: 353 NSLIQKQTLDNQWGAYAQKLLDGAFQKPRNGRKNDKAHPPIHPTAHA--GNLDGDERRVF 410
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
+ I R F+ + + + S+ADE+F+ +L + V + ++P+F
Sbjct: 411 ELITRRFLASCSTNAEGQNTTVEISIADEIFSTTGLVVLRRNYLEVYPYDKWATHALPNF 470
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
+ G++ V + E T+ P LTE++L+ LM+K+GIGTDA+I HI I +R YVT
Sbjct: 471 EEGEVFIPDVVDLKEGTTSRPSLLTEADLVGLMDKNGIGTDATIAEHIAKIIERGYVTEK 530
Query: 525 SGRR---LVPTSLGIVLVHGYQKI--DRELVEPTMR--SAYRVQ 561
R LVP++LG+ LV G+ I DR L +P +R + +R+Q
Sbjct: 531 QEARIKYLVPSTLGVGLVEGFNAIGFDRSLSKPHLRRETEHRMQ 574
>gi|190347906|gb|EDK40263.2| hypothetical protein PGUG_04361 [Meyerozyma guilliermondii ATCC
6260]
Length = 616
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 175/514 (34%), Positives = 275/514 (53%), Gaps = 14/514 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GHI +DF Y+ W+K P +LFS P E K + +ANEA++ L++
Sbjct: 54 MTSVLGHITNIDFPPAYS-WNKCVPGKLFSAPI--IEVVSKKDVYKNIANEARNASNLMI 110
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I E+ +A + +WR++FS + + A N VK ++
Sbjct: 111 WTDCDREGEFIGHEIFQAAQSGNPRLRVDEIWRSQFSHLERSHVLHAARNPVKLDLNAVA 170
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQ--GKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
+V R E+DLR+G FTR+ + + G ++SYG CQ PTLGF V+R+ +++
Sbjct: 171 AVGCRMEIDLRVGAGFTRFLSDLLKRSGAIPLEKGQVVSYGTCQFPTLGFVVDRYTRVKN 230
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
F EP+W + + + + TW+ GH+FD + ++A + K TV + + S
Sbjct: 231 FISEPFWHISIRVKKDDKIAPFTWTTGHVFDHLYVFLAYQACLQHKEATVTSITTKPTSN 290
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
+P L TVEL + SS M A+ AE+LY +G++SYPRTET ++P DL +V++
Sbjct: 291 WRPLPLTTVELQKDCSSFFKMSAKRALDAAEKLYNKGFLSYPRTETDKFPATMDLRSVIQ 350
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLD-GDAWRLYDYIV 408
Q WG++ E+L +PR G D HPPI P K + LD D ++Y+Y+V
Sbjct: 351 TQSQDSQWGNYASELLQGKFRQPRAGNHDDKAHPPIHPVKYVALSALDSADEKKIYEYVV 410
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE-SIPDFKPG 467
R F+ D Q A E F+ ++ + + + + +P+F+ G
Sbjct: 411 RRFLACCSDDARGNQTKAIVQWGAEKFSASGLAVIERNYLDIYVYKKWSSTVELPNFQQG 470
Query: 468 DLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT--- 524
D + + S ++ E KT+PP Y+TESELI+LM+ +GIGTDA+I HI+ I R YV
Sbjct: 471 DRVKLTSSQLQEGKTSPPKYMTESELIALMDANGIGTDATIADHIDKIINRGYVVKVKQG 530
Query: 525 SGRRLVPTSLGIVLVHGYQKIDRE---LVEPTMR 555
S ++P+ G+ L+ G+ I+ + L +P +R
Sbjct: 531 STEYILPSEFGMGLIQGFDAIELDNISLSKPFLR 564
>gi|390601900|gb|EIN11293.1| prokaryotic type I DNA topoisomerase [Punctularia strigosozonata
HHB-11173 SS5]
Length = 708
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 183/516 (35%), Positives = 277/516 (53%), Gaps = 22/516 (4%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MT V GH+M DF Y W +P LF P + + + + + L+ EA+ + L++
Sbjct: 51 MTCVSGHLMEHDFPPDYG-WRSCNPFALFDAPVQTKAS--DASIVSNLSAEARRAQQLMI 107
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I EV + N V RARFSA+ + I A + V+ + +A
Sbjct: 108 WTDCDREGEHIGSEVAAVC---VKANPRIVVKRARFSAVIAQQIHNAAQHPVELDQAQAD 164
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V+AR LDLRIG +FTR QT Q + ++ + +SYGPCQ PTLGF V R+ +++ F
Sbjct: 165 AVEARIILDLRIGASFTRMQTFALQRSFAEIKDT-VSYGPCQFPTLGFVVARYKQVKAFV 223
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE +W + L G + TW RGHIFD ++ V ++ TV V K K
Sbjct: 224 PETFWYIYFALRREGDEIQFTWKRGHIFDYDFALTLYEGVLTDRLATVTKVTKKATKKWK 283
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TVEL + S L M P + IAE+LY QG++SYPRTET Q+ FD ++++++Q
Sbjct: 284 PLPLTTVELQKAGSRLLRMAPKKVLDIAEKLYQQGFLSYPRTETDQFDRQFDFMSLIQKQ 343
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
P WG ++ G + PR+GK D HPPI PT A L GD ++Y+++ R F
Sbjct: 344 TVDPAWGQFATQLQGGGFATPRRGKHDDKAHPPIHPTAHA--ANLAGDEKKVYEFVTRRF 401
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG-------FTGVMTWSAMKNESIPDF 464
+ D Q E F+ + G + V + + +P+F
Sbjct: 402 LACCSKDAEGWQTTVDVEYGGEQFSATGARIATAGLVVTERNYLLVYPYDKWTGKELPEF 461
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
+ G+ ++ + +T+ P YLTE++L+ LM+K+GIGTDA+I HI+ + +R YV
Sbjct: 462 REGEQFQPSVCELRDGETSKPHYLTEADLVGLMDKNGIGTDATIAEHIHKVIEREYVVER 521
Query: 525 ---SGRRLVPTSLGIVLVHGYQKI--DRELVEPTMR 555
S + L+P++LG+ LV GY +I +R L +P +R
Sbjct: 522 MEGSTKYLLPSTLGLGLVEGYSQIGFERSLDKPQLR 557
>gi|346971576|gb|EGY15028.1| DNA topoisomerase [Verticillium dahliae VdLs.17]
Length = 760
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 171/474 (36%), Positives = 259/474 (54%), Gaps = 7/474 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MT+V GH++G++FT NW P LF P A+ K + + +A+ C+ L++
Sbjct: 55 MTAVRGHLLGMEFTPANKNWQYPPPDSLFHAPIVTTVASDKKAVADNIEQQARYCDLLII 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGENI E++ + P V RA+FS I + A NLV + +A
Sbjct: 115 WTDCDREGENIGREIVGLAKK----GKPTIRVKRAKFSNIERTHVIQAAKNLVDLDERQA 170
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+VDAR ELDLRIG AFTR+ T + G L +ISYG CQ PTLGF V+R+ +++ F
Sbjct: 171 DAVDARMELDLRIGYAFTRFLTTNLRNLGGPLVEMIISYGSCQFPTLGFVVDRYFRVKNF 230
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
PE +W + + G V WSR +FD+ + ++ + + V VQ K
Sbjct: 231 VPEQFWSIHVNHTQEGKKVKFAWSRNRLFDRMAVTILYERCIQARTAKVTKVQEKPTRKW 290
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
KP L TVEL + A+ L M AM +AE LY +G++SYPRTET ++ + +L ++++
Sbjct: 291 KPLPLTTVELQKAATRLLRMSGQQAMSVAEDLYNKGFISYPRTETDRFDKEINLRNLVQK 350
Query: 352 QESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRH 410
Q S WG + +++LS S+PR+G+ D HPPI P A+ + L DA RLY+YIVR
Sbjct: 351 QTQSDAWGQYAQDLLSGSFSQPRQGRHDDKAHPPIHPVTFASPSVLTHDAKRLYEYIVRR 410
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES-IPDFKPGDL 469
F+ D + +E F ++L + V + + + +P F+ G++
Sbjct: 411 FLACCSDDAKGVSTNVEILYGEESFHAHGLHVLERNYLDVFVYEKWNDTTELPKFRVGEV 470
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV 523
+ + KT+PP YLTE++LI+LM+ +GIGTDA++ HI I R Y +
Sbjct: 471 FQPTEAMLTDGKTSPPSYLTEADLIALMDINGIGTDATMAEHIQKIQDREYAAL 524
>gi|355753822|gb|EHH57787.1| DNA topoisomerase 3-alpha, partial [Macaca fascicularis]
Length = 839
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 172/416 (41%), Positives = 242/416 (58%), Gaps = 4/416 (0%)
Query: 143 VWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD 202
V RARFS IT ++ A NL +P+ + +VD RQELDLRIG AFTR+QT Q + +
Sbjct: 11 VLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQKIFPE 70
Query: 203 -LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFD 261
L LISYG CQ PTLGF VER I+ F PE + + +T + V W R +F+
Sbjct: 71 VLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRHRLFN 130
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
+ C V ++ ++ TVV+V+S KSK +PQAL+TVEL ++AS L + M+IAE
Sbjct: 131 HTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAE 190
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVG 380
+LYTQGY+SYPRTET +P + +L ++ QQ P WG + +L G PR G K
Sbjct: 191 KLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGNKSDQ 250
Query: 381 DHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
HPPI PTK L GD RLY++IVRHF+ D + + +A E F
Sbjct: 251 AHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQDAQGQETTVEIDIAQERFVAHGL 308
Query: 441 YLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKH 500
+L + V + ++ +P ++ G +V+MV+ +T+PP LTE++LI+LMEKH
Sbjct: 309 VILARNYLDVYPYDHWSDKILPVYERGSRFQPSTVEMVDGETSPPKLLTEADLIALMEKH 368
Query: 501 GIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
GIGTDA+ HI I R YV +T +R +P LG+ LV GY + E+ +P +R+
Sbjct: 369 GIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMGLVEGYDSMGYEMSKPDLRA 424
>gi|295664843|ref|XP_002792973.1| DNA topoisomerase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226278494|gb|EEH34060.1| DNA topoisomerase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 632
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 181/507 (35%), Positives = 269/507 (53%), Gaps = 18/507 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+ GLDF S+Y W+ P LF P + K K+ + A+ + L +
Sbjct: 58 VTSVIGHLTGLDFDSQYRGWNSCPPGRLFDAPVQVSVPKDKQKIAENIQTLARHSKALFI 117
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I EV R+Q +P+ V RARFS + A N ++ + F+A
Sbjct: 118 WTDCDREGEHIGTEV----RYQARKGNPQIEVKRARFSNTERAHVLHAATNPIELDEFQA 173
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V AR ELDLRIG AFTR QT + G L+ +ISYG CQ PTLGF V+R+ +++ F
Sbjct: 174 NAVAARIELDLRIGAAFTRLQTLQLKSLGGVLEDRIISYGSCQFPTLGFVVDRYFRVKNF 233
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
KPE +W++ ++ +G V+ W R H+FD++ V F+ K V V K
Sbjct: 234 KPETFWVIKVSHLRDGKTVNFLWRRVHVFDRAAAVVLFERCLSAKTAKVTKVIKKPTRKW 293
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
+P L TV+L + S L M M+IAE LYT+G++SYPRTET Q+ + DL ++ +
Sbjct: 294 RPLPLTTVDLQMMGSKYLRMDSQKVMKIAEGLYTKGFISYPRTETDQFDKGIDLKKLVEK 353
Query: 352 QESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDG-DAWRLYDYIVR 409
Q S +WG + + ++ ++PR G+ + HPPI P A L D R+Y+++ R
Sbjct: 354 QIPSENWGQNAQRLMDGAFTQPRAGRHNDKAHPPIHPVIYAAPAALSSEDERRVYEFVSR 413
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGD 468
F+ D + DE+F +L + V + + ++ +P F G+
Sbjct: 414 RFLACCSEDAKGESTEIEIKYGDEIFHAHGLLVLERNYLDVYVYDKWESSQEMPIFTVGE 473
Query: 469 LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV---TS 525
+ K+ + KT P YLTE ELI LM+ +GIGTDA++ HI I +R YV +
Sbjct: 474 VFEPTEAKITDGKTVAPGYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVATRPRSG 533
Query: 526 GRR-------LVPTSLGIVLVHGYQKI 545
G R +PT LG+ LV GY +
Sbjct: 534 GGRGNNTVQEFIPTQLGVALVKGYDDV 560
>gi|453089198|gb|EMF17238.1| DNA topoisomerase [Mycosphaerella populorum SO2202]
Length = 679
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 176/475 (37%), Positives = 258/475 (54%), Gaps = 6/475 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+M DF+++Y NW DP LF P E A + + +A+ +L +
Sbjct: 58 MTSVLGHLMEQDFSAEYKNWRSRDPSALFDAPIETFVADKMKGVAKNIETKARSAHYLYI 117
Query: 113 WLDCDKEGENICFEVME-AVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I E+ E A + + S V RARFS + + A V + +A
Sbjct: 118 WTDCDREGEHIGAEIRECAFKTNARLRSAGKVVRARFSNVERNHVIDAARRPVALDEAQA 177
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKY-GDLDAS-LISYGPCQTPTLGFCVERHDKIR 229
+V AR ELDLRIG FTR T Q G +A +ISYG CQ PTLGF VER+ ++R
Sbjct: 178 NAVYARTELDLRIGACFTRRLTISLQPMLPGAAEAKKIISYGSCQFPTLGFVVERYMRVR 237
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKS 289
F PE +W + +T VS W+R H+FD+ + ++ + +H TV VQ+ S
Sbjct: 238 NFVPETFWSIKVTHTKEDAKVSFNWARKHLFDRMIAVILYEQCIQARHATVTKVQTMPTS 297
Query: 290 KTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL 349
K +P L TVEL + +S L M M IAE LY +G++SYPRTET Q+ N DL ++
Sbjct: 298 KWRPLPLTTVELQKCSSRFLRMDSQRVMGIAESLYQKGFISYPRTETDQFDRNMDLRQLI 357
Query: 350 RQQ-ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYI 407
+ Q ++ W H + +LSNG PR G+ + HPPI P + LD ++ R+Y++I
Sbjct: 358 QNQAQNQSRWSQHAQGLLSNGFQWPRAGRHNDKAHPPIHPVNFLGPSALDAESQRVYEFI 417
Query: 408 VRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSA-MKNESIPDFKP 466
R F+ D ++ + E F+ +L + V + ++ +P+F+
Sbjct: 418 TRRFLACCSDDAKGSKTEITIAYGPETFSASGLTVLERNYLDVYPYDKWTSSQVLPEFRE 477
Query: 467 GDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
G++ + E KT+PP YLTE ELI+LM+ +GIGTDA++ HI I +R YV
Sbjct: 478 GEVFVPTEALLHEGKTSPPGYLTEPELIALMDTNGIGTDATMAEHIAKIKEREYV 532
>gi|67536770|ref|XP_662159.1| hypothetical protein AN4555.2 [Aspergillus nidulans FGSC A4]
gi|40741708|gb|EAA60898.1| hypothetical protein AN4555.2 [Aspergillus nidulans FGSC A4]
gi|259482615|tpe|CBF77265.1| TPA: DNA topoisomerase III (Eurofung) [Aspergillus nidulans FGSC
A4]
Length = 629
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 175/502 (34%), Positives = 265/502 (52%), Gaps = 12/502 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ L+F +Y+ W P LF P + K + + +A ++LV+
Sbjct: 59 MTSVLGHLTSLEFERQYSGWASCPPAALFEAPVKIAVDDDKKAIANNIMKQATHSQYLVI 118
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I EV + + N V RA+F+ + A +L++ + +A
Sbjct: 119 WTDCDREGEHIGTEVRDQAKAG---NGRIVVKRAKFNNTEKIHVLNAARSLIELDERQAN 175
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V AR ELDLRIG AFTR T Q + L +ISYG CQ PTLGF V+R+ +++ FK
Sbjct: 176 AVAARIELDLRIGAAFTRLLTLQLQNLHATLTQKVISYGSCQFPTLGFVVDRYLRVKRFK 235
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE +W + + +G+ VS W+R H+FD++ + + V V SK +
Sbjct: 236 PETFWGIKVMHTRDGIKVSFLWNRVHLFDRAAVTIMLERCLMATKAEVTKVNQKPTSKWR 295
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TV+L + + L M M+IAE LYT+G++SYPRTET Q+ + DL ++ +Q
Sbjct: 296 PLPLTTVDLQMMGTKYLRMDSAKVMKIAENLYTKGFISYPRTETDQFDKGIDLKKLIEKQ 355
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
WG++ R +L PR G+ + HPPI P T L D ++Y+++ R F
Sbjct: 356 LPDERWGEYARCLLGGNFRTPRAGRHNDQAHPPIHPVCWVNPTTLTEDERKVYEFVTRRF 415
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKN-ESIPDFKPGDLI 470
+ D + DEMF +L + V + ++ + +P+++ G+L
Sbjct: 416 LACCSDDAKGQSTDVEIRYGDEMFHAHGLLVLERNYLDVYVYDKWESTQQLPNYQVGELF 475
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV---TVTSGR 527
M + KT+PP+YLTE ELI LM+ +GIGTDA++ HI I R Y+ T SGR
Sbjct: 476 EPTEANMFDGKTSPPNYLTEPELIGLMDANGIGTDATMAEHIERIKSREYIGEMTRGSGR 535
Query: 528 R----LVPTSLGIVLVHGYQKI 545
L+PT LGI L+ GY+ +
Sbjct: 536 NAVKLLIPTRLGIALILGYEDV 557
>gi|240280657|gb|EER44161.1| DNA topoisomerase III [Ajellomyces capsulatus H143]
Length = 630
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 178/505 (35%), Positives = 266/505 (52%), Gaps = 16/505 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ L+F S+Y W+ P LF P A L + + A++ + L +
Sbjct: 58 MTSVIGHLTSLEFDSRYRGWNSCPPGRLFDAPVVDSVAKDNLTIAENIRTLARNSKALFI 117
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I EV R+Q ++P+ + RARFS I A N ++ + +A
Sbjct: 118 WTDCDREGEHIGTEV----RYQARKSNPRIEIKRARFSNTERAHILQAATNPIELDDSQA 173
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V AR ELDLRIG AFTR QT + G L+ +ISYG CQ PTLGF V+R+ +++ F
Sbjct: 174 NAVAARIELDLRIGAAFTRLQTLQLKSLGGVLEDRVISYGSCQFPTLGFVVDRYFRVKNF 233
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
KPE +W + ++ +G V+ W R H++D++ + F+ K V V K
Sbjct: 234 KPEKFWTIKVSHVRDGKTVNFLWRRVHLYDRAAVVILFERCLTSKTAKVTKVHKKPTRKW 293
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
+P L TV+L + S L M M+IAE LYT+G++SYPRTET Q+ + DL ++ +
Sbjct: 294 RPLPLTTVDLQMMGSRYLRMDSQKVMKIAETLYTKGFISYPRTETDQFDKGIDLKKLIEK 353
Query: 352 QESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRH 410
Q S +WG + + +++ ++PR G + HPPI P A T L D +Y+++ R
Sbjct: 354 QIPSENWGQYAQRLINGSFTQPRAGHHNDKAHPPIHPVIFAAPTVLSNDERLVYEFVTRR 413
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDL 469
F+ D + DE+F +L + V + + ++ IP F G++
Sbjct: 414 FLACCSEDAKGESTEVEIKYGDEIFHTHGLLVLERNYLDVYVYDKWESSQEIPPFTLGEV 473
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT---SG 526
K+ + KT P YLTE ELI LM+ +GIGTDA++ HI I +R YV G
Sbjct: 474 FEPTEAKITDGKTVAPGYLTEPELIGLMDANGIGTDATMADHIARIKEREYVATRPRGGG 533
Query: 527 R------RLVPTSLGIVLVHGYQKI 545
R +PT LG+ LV GY +
Sbjct: 534 RGNNAVQEFIPTQLGVALVEGYDNV 558
>gi|326477792|gb|EGE01802.1| DNA topoisomerase III [Trichophyton equinum CBS 127.97]
Length = 630
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 177/517 (34%), Positives = 269/517 (52%), Gaps = 18/517 (3%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLA 101
GP +G + MTSV GH+ DF +Y NW+ +P +LF+ L + +
Sbjct: 48 GPPWGSCSVV-MTSVLGHLTASDFEPRYRNWNSCNPSQLFAANVIIAVDKENLGIARNIK 106
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAM 160
+A+D L +W DCD+EGE+I EV R Q + +P + RA+FS + A
Sbjct: 107 RQARDSRALFIWTDCDREGEHIGSEV----RDQAVLGNPSIEIKRAKFSNTERTHVLEAA 162
Query: 161 WNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGF 220
++ + +A +V AR ELDLRIG AFTR QT Q G L +ISYG CQ PTLGF
Sbjct: 163 RRPIELDERQADAVFARIELDLRIGAAFTRLQTLQLQTLGGALAERIISYGSCQFPTLGF 222
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTV 280
V+R+ +++ FKPE +W + ++ +G+ V+ W RGH+FD++ + F+ K TV
Sbjct: 223 VVDRYMRVKNFKPEAFWSIKVSHTRDGITVNFNWQRGHLFDRAAVVILFERCLAAKTATV 282
Query: 281 VDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP 340
V SK +P L TV+L + S L + M+ AE LYT+G++SYPRTET Q+
Sbjct: 283 TKVNKKPTSKWRPLPLTTVDLQMMGSKYLRIDSQAIMKAAETLYTKGFISYPRTETDQFD 342
Query: 341 ENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGD 399
FDL ++ +Q S WG++ R ++ G +PR+G++ HPPI P + T L+ +
Sbjct: 343 NEFDLKKLVEKQYPSEVWGEYARGLIGGGFKQPRRGRNNDKAHPPIHPVAYVSPTVLNAN 402
Query: 400 AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-N 458
++Y+++ R F+ D + DE F +L + V + + +
Sbjct: 403 EKKVYEFVTRRFLACCSEDAKGESTDIELQYGDEEFHTRGLVVLERNYLDVYVYDKWESS 462
Query: 459 ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQR 518
+ +P+F + + + E KT P YLTE ELI LM+ +GIGTDA++ HI+ I R
Sbjct: 463 QPLPNFVLNESFEPKEANITEGKTVAPGYLTEPELIGLMDANGIGTDATMADHISKIKAR 522
Query: 519 NYVTVTSGR----------RLVPTSLGIVLVHGYQKI 545
YV +PT LG+ LV GY +
Sbjct: 523 EYVATRPRGGGRGSGGRVDEFIPTKLGVALVEGYDNV 559
>gi|449304688|gb|EMD00695.1| hypothetical protein BAUCODRAFT_60941 [Baudoinia compniacensis UAMH
10762]
Length = 675
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 177/504 (35%), Positives = 262/504 (51%), Gaps = 22/504 (4%)
Query: 33 GACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP 92
GACSV MTSV GH++ DF +Y W+ +P LF E
Sbjct: 51 GACSV--------------TMTSVLGHLLSHDFEDRYRKWNSCEPSALFEARIETYVEDD 96
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRH-QININSPKTVWRARFSAI 151
K + + +A+ ++L +W DCD+EGE+I E+ + H + P RARFS +
Sbjct: 97 KKAVAGNIERQARYAQYLYIWTDCDREGEHIGTEIRQVATHGNQALRQPGKTVRARFSNV 156
Query: 152 TDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASL 207
I A N V + +A +V +R ELDLRIG FTR T QG++G + +
Sbjct: 157 ERAHILNAASNPVALDEAQANAVMSRIELDLRIGATFTRNLTLSIQPMLQGRFGAEERQV 216
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNV 267
ISYG CQ PTLGF VER+ ++R F PE +W + + +G+ V+ W+R H+FD+ V
Sbjct: 217 ISYGSCQFPTLGFVVERYLRVRNFVPETFWTIKVMHEKHGIKVNFRWARDHLFDRVAVIV 276
Query: 268 FFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQG 327
F+ + V VQ+ SK KP L TVEL + S L M H MQ+AE LY +G
Sbjct: 277 LFERCLTARVARVTGVQTKPASKWKPLPLTTVELQKCGSRFLRMDSHRVMQVAEGLYQKG 336
Query: 328 YVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPIT 386
++SYPRTET Q+ DL A++++Q W + +++ G S+PR+G++ HPPI
Sbjct: 337 WISYPRTETDQFDRGMDLRALVQKQTQGGAWAQFAQALVNGGFSQPRQGRNNDKAHPPIH 396
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P TQL + R+++++VR F+ D ++ E F +L
Sbjct: 397 PVNFVLPTQLSAEEQRVHEFVVRRFLACCSQDARGSKTEISILYGPETFHTGGLAVLERN 456
Query: 447 FTGVMTWSA-MKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
+ V + ++ +P+F+ G+ M + +T+PP YLTE ELI+LM+ +GIGTD
Sbjct: 457 YLDVYPYDRWTSSQELPEFREGETFEPTEAMMRDGQTSPPGYLTEPELIALMDVNGIGTD 516
Query: 506 ASIPVHINNICQRNYV-TVTSGRR 528
A++ HI I R YV T GRR
Sbjct: 517 ATMAEHIKKIKDRQYVETRPRGRR 540
>gi|118374593|ref|XP_001020484.1| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|89302251|gb|EAS00239.1| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 1049
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 181/523 (34%), Positives = 275/523 (52%), Gaps = 37/523 (7%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTE--KREATPKLKLPAFLANEAKDCEFL 110
TSV GH++ F K+ NW +P L +E K + K+ + L A+ + L
Sbjct: 54 FTSVTGHLISQKFDDKFKNWKSFNPSVLLDQSSEILKFVESDKISIQRNLIKWARQVDTL 113
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
+LWLDCD+EGE I +E RA FS++ ++ A+ NL P
Sbjct: 114 ILWLDCDREGEAIAYE------------------RAWFSSLDRLNVTNAINNLRDPRKEL 155
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLD--ASLISYGPCQTPTLGFCVERHDKI 228
+ +V++R E+DLRIG AFT +QT + + L +ISYGPCQ PTLGF V+R+++I
Sbjct: 156 SEAVESRMEIDLRIGSAFTVFQTLNLKNNFQSLKDKKEVISYGPCQFPTLGFVVDRYNQI 215
Query: 229 RTFKPEPYWLLDLTL----NLNGVAVSVTWSRGHIFDKSTCNVFF------KAVEKEKHV 278
F+ E +W + + N + V + WSRG +FD++ +VF+ + E +
Sbjct: 216 LKFQDEKFWYIQPSYQWKDNNKTLTVDLKWSRGRLFDQAIASVFYLNCTQNEDGEYDPKG 275
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQ 338
VV +K +P L TV+L + L M M AE+LY GY+SYPRTET +
Sbjct: 276 IVVKKNERDTTKIRPYPLTTVDLTKQGCRILRMASEKIMHTAEQLYQSGYISYPRTETNK 335
Query: 339 YPENFD---LVAVLRQQESSPDWGDHVREVLSNG-ISKPRKGK-DVGDHPPITPTKLATR 393
YP+ F L+ ++R Q+ S +WG + ++ G +PR GK D HPPI P KLA +
Sbjct: 336 YPDTFQNGQLMDLVRNQKQSDEWGFYSSNLIDQGNFQRPRAGKQDDKAHPPIHPIKLANK 395
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
QL + W++Y++I RHF+ + D V + + DE F ++ + + + T+
Sbjct: 396 NQLKPEEWKVYEFITRHFLASCGKDAVGAKTEVEVKFNDESFNIDGLVVKEKNYLEIWTY 455
Query: 454 SAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
+ +P +PG +I Q + + E KTTPP LTESELI +M K+GIGTDA++ HI
Sbjct: 456 EKWNDSIVPPLQPGQVIIPQKILLQEGKTTPPKPLTESELIDMMNKNGIGTDATMHDHIL 515
Query: 514 NICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
I +R Y PT LG+ L H Y ++ L +P +R+
Sbjct: 516 TIQKRGYAVKNQHLMFTPTPLGLALCHAYDQLGLTLSKPDLRA 558
>gi|225560799|gb|EEH09080.1| DNA topoisomerase III [Ajellomyces capsulatus G186AR]
Length = 630
Score = 315 bits (806), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 178/505 (35%), Positives = 266/505 (52%), Gaps = 16/505 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ L+F S+Y W+ P LF P A L + + A++ + L +
Sbjct: 58 MTSVIGHLTSLEFDSQYRGWNSCPPGRLFDAPVVDSVAKNNLTIAENIRTLARNSKALFI 117
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I EV R+Q ++P+ + RARFS I A N + + +A
Sbjct: 118 WTDCDREGEHIGTEV----RYQARKSNPRIEIKRARFSNTERAHILQAATNPIDLDDSQA 173
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V AR ELDLRIG AFTR QT + G L+ +ISYG CQ PTLGF V+R+ +++ F
Sbjct: 174 NAVAARIELDLRIGAAFTRLQTLQLKSLGGVLEDRVISYGSCQFPTLGFVVDRYFRVKNF 233
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
KPE +W + ++ +G V+ W R H++D++ + F+ K V V K
Sbjct: 234 KPEKFWTIKVSHVRDGKTVNFLWRRVHLYDRAAVVILFERCLTSKTAKVTKVHKKPTRKW 293
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
+P L TV+L + S L M M+IAE LYT+G++SYPRTET Q+ + DL ++ +
Sbjct: 294 RPLPLTTVDLQMMGSRYLRMDSQKVMKIAETLYTKGFISYPRTETDQFDKGIDLKKLIEK 353
Query: 352 QESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRH 410
Q S +WG + + +++ ++PR G + HPPI P A T L D +Y+++ R
Sbjct: 354 QIPSENWGQYAQRLINGSFTQPRAGHHNDKAHPPIHPVIFAAPTVLSNDERLVYEFVTRR 413
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDL 469
F+ D + DE+F +L + V + + ++ IP F G++
Sbjct: 414 FLACCSEDAKGESTEVEIKYGDEIFHTHGLLVLERNYLDVYVYDKWESSQEIPPFTLGEV 473
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT---SG 526
K+++ KT P YLTE ELI LM+ +GIGTDA++ HI I +R YV G
Sbjct: 474 FEPTEAKIMDGKTVAPGYLTEPELIGLMDANGIGTDATMADHIARIKEREYVATRPRGGG 533
Query: 527 R------RLVPTSLGIVLVHGYQKI 545
R +PT LG+ LV GY +
Sbjct: 534 RGNNAVQEFIPTQLGVALVEGYDNV 558
>gi|327308726|ref|XP_003239054.1| DNA topoisomerase III [Trichophyton rubrum CBS 118892]
gi|326459310|gb|EGD84763.1| DNA topoisomerase III [Trichophyton rubrum CBS 118892]
Length = 630
Score = 315 bits (806), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 177/517 (34%), Positives = 266/517 (51%), Gaps = 18/517 (3%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLA 101
GP +G + MTSV GH+ DF +Y NW+ +P +LF+ K+ + +
Sbjct: 48 GPPWGSCSVV-MTSVLGHLTASDFEPRYRNWNSCNPSQLFAANVIIAVDKEKVGIARNIK 106
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAM 160
+A+D L +W DCD+EGE+I EV R Q + +P + RARFS + A
Sbjct: 107 RQARDSRALFIWTDCDREGEHIGSEV----RDQAVLGNPSIEIKRARFSNTERTHVLEAA 162
Query: 161 WNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGF 220
+ + + +V AR ELDLRIG AFTR QT Q G L +ISYG CQ PTLGF
Sbjct: 163 RRPIGLDERQVDAVAARIELDLRIGAAFTRLQTLQLQTLGGALAEKIISYGSCQFPTLGF 222
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTV 280
V+R+ +++ FKPE +W + ++ +G+ V+ W RGH+FD++ V F+ K TV
Sbjct: 223 VVDRYMRVKNFKPEAFWSIKVSHTRDGITVNFNWQRGHLFDRAAVVVLFERCLAAKTATV 282
Query: 281 VDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP 340
V SK +P L TV+L + S L + M+ AE LYT+G++SYPRTET Q+
Sbjct: 283 TKVNKKPTSKWRPLPLTTVDLQMMGSKYLRIDSQAIMKAAETLYTKGFISYPRTETDQFD 342
Query: 341 ENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGD 399
DL ++ +Q S WG++ R ++ G +PR+G++ HPPI P + T L +
Sbjct: 343 NEIDLKKLVEKQYPSEAWGEYARGLIGGGFKQPRRGRNNDKAHPPIHPVAYVSPTVLSAN 402
Query: 400 AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-N 458
++Y+++ R F+ D + DE F +L + V + + +
Sbjct: 403 EKKVYEFVTRRFLACCSEDAKGESTDIEIQYGDEEFHTRGLVVLERNYLDVYVYDKWESS 462
Query: 459 ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQR 518
+ +P+F + + + E KT P YLTE ELI LM+ +GIGTDA++ HI+ I R
Sbjct: 463 QPLPNFALNESFEPKEANITEGKTVAPGYLTEPELIGLMDANGIGTDATMAEHISKIKAR 522
Query: 519 NYVTVTSGR----------RLVPTSLGIVLVHGYQKI 545
YV +PT LG+ LV GY +
Sbjct: 523 EYVATRPRGGGRGSGGRVDEFIPTKLGVALVEGYDNV 559
>gi|344229989|gb|EGV61874.1| hypothetical protein CANTEDRAFT_108430 [Candida tenuis ATCC 10573]
Length = 616
Score = 315 bits (806), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 174/505 (34%), Positives = 273/505 (54%), Gaps = 19/505 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GHI +DF ++Y W +V P L P + + KL + +ANEA+ +L++
Sbjct: 54 MTSVTGHITSMDFPAEYA-WGRVPPGRLLDAPVKIQPDKSKLAIHQNIANEARSANYLMI 112
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I +E++EA + S +VWR FS + I +A N N+
Sbjct: 113 WTDCDREGEAIGYEILEAAKKGNTRLSLSSVWRPHFSHLEKNHILSAARNPQNLNMKTVE 172
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V RQE+DLR+G +FTR T + L ++SYG CQ PTLGF V+R+ +++ F
Sbjct: 173 AVHCRQEVDLRVGASFTRLLTDIL--RRSKLVDEIVSYGTCQFPTLGFVVDRYKRVKNFV 230
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE +W + ++ + VS +W++ H FD+ + ++ K H T+ V S K
Sbjct: 231 PEKFWYISTSVEKSNQTVSFSWAKTHFFDRLFVVMLYEECMKSTHGTIKGVTRKPTSNFK 290
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TV L + ++ M A+ AE+LY G++SYPRTET +P DL ++++
Sbjct: 291 PFPLTTVSLQKDCATYFKMSAKEALDAAEKLYQSGWISYPRTETDMFPPEMDLRSIIQTH 350
Query: 353 ESSPDWGDHVREVLS----NGISKPRKGKDVG-DHPPITPTKLATRTQLDGDAWR-LYDY 406
WG + +++ GI PRKG++ HPPI P K + D R +Y+Y
Sbjct: 351 TQDSRWGHYATSLMTVDGKYGI--PRKGRNNDKSHPPIHPVKYVNLETITNDKQRKVYEY 408
Query: 407 IVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM---TWSAMKNESIPD 463
+VR F+ D Q VA+ +E F + + V TWS+ E +P
Sbjct: 409 VVRRFLACCSTDAKGFQTVAELQWGNETFRASGLEVTEKNYLDVYTYRTWSS--TEQLPP 466
Query: 464 FKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV 523
F G+ + ++S ++ E KT+PP+++TE+ELI+LM+ +GIGTDA+I HI+ I QR+Y+T
Sbjct: 467 FVAGERVNLKSAEVKEGKTSPPNHMTETELIALMDANGIGTDATIAEHIHKIEQRSYITK 526
Query: 524 TSGRR---LVPTSLGIVLVHGYQKI 545
+ ++PT LG+ L+ + I
Sbjct: 527 KKTGKSHIILPTELGMGLIEAFSSI 551
>gi|392862729|gb|EAS36605.2| DNA topoisomerase III [Coccidioides immitis RS]
Length = 645
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 183/537 (34%), Positives = 274/537 (51%), Gaps = 31/537 (5%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLA 101
GP +G+ + MTSV GH+ LDF S++ +W P +LF P K+ + +
Sbjct: 48 GPPWGNSSV-TMTSVIGHLTALDFESEWRHWQSCPPGQLFDAPVVNDVDKDKIGIAENIR 106
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMW 161
N+A+ + L +W DCD+EGE+I EV + N V RA+FS + A
Sbjct: 107 NKARQADALFIWTDCDREGEHIGSEVRT---QAVGANPRIEVKRAKFSNTERAHVLRAAR 163
Query: 162 NLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYG---------- 211
N + + + +V AR ELDLRIG AFTR T G L LISYG
Sbjct: 164 NPIALDERQINAVAARIELDLRIGAAFTRLLTLQLGALGGALSERLISYGKETYVSPPLF 223
Query: 212 -------PCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKST 264
CQ PTLGF V+R+ +++ FKPEP+W + +T +G V+ TWSRG++FD++
Sbjct: 224 PSDSAVGSCQFPTLGFVVDRYFRVKNFKPEPFWSIKVTHARDGKTVNFTWSRGNLFDRAA 283
Query: 265 CNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY 324
+ F+ K V V K +P L TV+L + S L M M++AE LY
Sbjct: 284 VVMIFERCLTAKTAKVTKVNKKPTKKWRPLPLTTVDLQMMGSKFLRMDSQKVMKVAESLY 343
Query: 325 TQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHP 383
T+G++SYPRTET Q+ + DL ++ +Q WG + + +++ G +PR G+ + HP
Sbjct: 344 TKGFISYPRTETDQFDKGIDLKKLIEKQIQDGVWGQYSQGLMAGGFKQPRSGRHNDQAHP 403
Query: 384 PITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLL 443
PI P + L D R+Y+++VR F+ D DE F + +L
Sbjct: 404 PIHPVTYVAPSVLTADERRVYEFVVRRFLACCSDDAKGETSEVDIQYGDEKFHAQGLIVL 463
Query: 444 HPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGI 502
+ + + + ++ +P F G++ + K+ E KTTPP+YLTE ELI LM+ +GI
Sbjct: 464 ERNYLDIYVYDKWESSQELPKFTVGEVFEPKEAKITEGKTTPPNYLTEPELIGLMDANGI 523
Query: 503 GTDASIPVHINNICQRNYVTVT----SGR----RLVPTSLGIVLVHGYQKIDRELVE 551
GTDA++ HI I R YV +GR +PT LG+ LV GY + +L +
Sbjct: 524 GTDATMAEHIFKIKDRQYVATRRRGGNGRNSVEEFIPTKLGVALVEGYDNLVLDLAD 580
>gi|403166354|ref|XP_003326221.2| DNA topoisomerase III [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375166208|gb|EFP81802.2| DNA topoisomerase III [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1124
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 186/515 (36%), Positives = 262/515 (50%), Gaps = 11/515 (2%)
Query: 48 LVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDC 107
L F +TSV GH+ DF + Y W DP LF P + + L EA+
Sbjct: 110 LADFTVTSVLGHLTCTDFDADYKGWHNCDPFSLFDAPIHRFVNPDHTGIERNLKAEARRA 169
Query: 108 EFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPN 167
+ L++W DCD+EGE+I E++ R + V RARFSAI I A N + +
Sbjct: 170 DKLMIWTDCDREGEHIGSEIVSVCRA---VKPGIIVLRARFSAIIPAQIHNACQNAGQLD 226
Query: 168 IFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDK 227
+ + +V AR ELDLRIG A TR QT Q ++ L SLISYGPCQ PTLGF V+++DK
Sbjct: 227 MNQVYAVQARMELDLRIGAALTRCQTMGLQTRFHQLADSLISYGPCQFPTLGFVVDQYDK 286
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
++ F E +W + + L + V W R +FD V + E TV DV
Sbjct: 287 VKAFVAEAFWYIHVVLERDDSKVEFNWKRHRLFDYHAAFVLHEMCIDEPEATVKDVNIKP 346
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
K KP L TVEL + S L + P + IAE+LY +G VSYPRTET Q+ +FD +
Sbjct: 347 TVKWKPLPLTTVELQKSGSRLLHLTPKTVLDIAEKLYQKGLVSYPRTETDQFDRDFDFMG 406
Query: 348 VLRQQESSPDWGDHVREVL--SNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYD 405
++ +Q + WGD L G P+ G+ D P T A L D R+YD
Sbjct: 407 LIEKQMNDSQWGDFATRDLKKGGGFHTPQNGEKK-DITPSTNHPTAHANNLTADEKRVYD 465
Query: 406 YIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFK 465
+I R ++ + +A E FT ++ + V + +PDF+
Sbjct: 466 FITRRYLACCSKNATGKTTTVVIDIAAEEFTATGLVIIERNYLEVYVYDKWNGTLLPDFQ 525
Query: 466 PGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV---T 522
G+ S ++ E T+ P+ LTE++L+ LM+++GIGTDA+I HI I RNYV
Sbjct: 526 IGEKFMPTSCELKEGSTSRPNLLTEADLVGLMDRNGIGTDATIAEHIAKIIDRNYVFKIR 585
Query: 523 VTSGRRLVPTSLGIVLVHGYQKI--DRELVEPTMR 555
S + LVP++LGI LV GY I D+ L +P +R
Sbjct: 586 EGSTQYLVPSTLGIGLVEGYNAIGLDKSLSKPQLR 620
>gi|389584867|dbj|GAB67598.1| DNA topoisomerase III alpha [Plasmodium cynomolgi strain B]
Length = 646
Score = 314 bits (804), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 187/541 (34%), Positives = 282/541 (52%), Gaps = 45/541 (8%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+ F KY NW DP ELF K K+ L +K C L+L
Sbjct: 56 VTSVTGHLTEQKFDDKYRNWINTDPQELFDAEITIYVENDKKKIENNLKKYSKFCNLLIL 115
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGE+ICFEV+ +N + RA+FSA+T+KDI A+ NL PN A
Sbjct: 116 WLDCDREGEHICFEVINTC---FVMNREIRIKRAQFSAVTEKDILHAINNLKYPNRNLAY 172
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDL---DASLISYGPCQTPTLGFCVERHDKIR 229
SVD R+E+DLR+G FTR F +Y L S+ISYGPCQ PTLGF V R+ I+
Sbjct: 173 SVDVRREIDLRMGSIFTR----FLTIRYVHLIKTGTSIISYGPCQFPTLGFVVNRYMDIK 228
Query: 230 TFKPEPYWLLDLTL----------------------------NLNGVAVSVTWSRGHIFD 261
F E YW + + N N + V TWSR ++D
Sbjct: 229 NFVSEYYWSIKMQYLYEDGDKSGDEPEWGISKKETKRKKEDTNQNTI-VDFTWSRLRLYD 287
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
+ ++ + K + ++ + K +P LNT+++ ++ S + M IAE
Sbjct: 288 HLAVVLIYEDLLKSPLCRITNIYENQVKKYRPLPLNTLQMTKLVSKHFHISSKQCMNIAE 347
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLS-NGISKPRKGK-DV 379
+LY +G++SYPRTET +P + +L +++ + + S +G + +++ N +PRKGK +
Sbjct: 348 KLYNKGFISYPRTETNYFPSSMNLRSIVGELKKSKAFGSYAKKLSEGNNFKEPRKGKLND 407
Query: 380 GDHPPITPTKLATRT-QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
HPPI P K +T +++ W +Y+ I RHF+ D + ++ E F +
Sbjct: 408 QAHPPIHPVKNMHKTDKVEEKEWIIYELICRHFLAVCSDDAIGFNSKVVATIGKEEFFCK 467
Query: 439 AKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
++ + + + ++ IP F+ S+ + E T PP YL+E +L+SLM+
Sbjct: 468 GLKIVKKNYLEIYIYEKWNDKIIPPFQVNQEFYPYSLLIEEGITQPPKYLSECDLLSLMD 527
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQK---IDRELVEPTMR 555
K+GIGTDA++ HI NI +RNYV S VPT+LGI LV Y+K I +L EP++R
Sbjct: 528 KYGIGTDATMHEHIENIQKRNYVFKNSKNLFVPTNLGIALVLSYKKFKDIGVDLTEPSLR 587
Query: 556 S 556
+
Sbjct: 588 A 588
>gi|396493373|ref|XP_003844019.1| hypothetical protein LEMA_P016700.1 [Leptosphaeria maculans JN3]
gi|312220599|emb|CBY00540.1| hypothetical protein LEMA_P016700.1 [Leptosphaeria maculans JN3]
Length = 736
Score = 314 bits (804), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 171/474 (36%), Positives = 255/474 (53%), Gaps = 8/474 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
T V GHI+ DF ++ W P LF P E+ A K + + +A+ L +
Sbjct: 55 FTCVAGHIVAHDFPERFKKWHSCQPAALFDAPIEQSIAENKKVVAKNIETQARYASILYI 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I E+ + + + VWRARFS I + A + V+ + +A+
Sbjct: 115 WTDCDREGEHIGTEIRDIA---LKVKPNMQVWRARFSNIERAHVIQASQSPVRLDEAQAQ 171
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQG---KYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
+V AR ELDLR+G AFTR QT Q + G+ LISYG CQ PTLGF V+R+ ++R
Sbjct: 172 AVSARIELDLRLGAAFTRMQTLALQNMVPQQGEERRKLISYGSCQFPTLGFVVDRYLRVR 231
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKS 289
F PE +WL+ L +G+ V W RGH+FD+ + F+ K VV +
Sbjct: 232 NFVPESFWLIKLAHKKDGIDVKFNWRRGHLFDRMAVIIIFERCLVSKTAKVVKMTKKPTK 291
Query: 290 KTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL 349
K KP L TVEL + S L M M++AE+LYT+G++SYPRTET Q+ DL A++
Sbjct: 292 KWKPLPLTTVELQKNGSRFLRMTSQDVMKVAEQLYTKGWISYPRTETDQFDRGMDLRALV 351
Query: 350 RQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIV 408
+Q WG + +++ G +PR G++ HPPI P TQL+ D ++YD++V
Sbjct: 352 SRQTQDNRWGPFAQNLMNGGFQQPRSGRNNDKAHPPIHPVNYVAATQLNEDERKVYDFVV 411
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPG 467
R F+ D V + E+F +L + V + + ++ +PD++ G
Sbjct: 412 RRFLACCAEDAVGEATDIEIEYGSELFHAHGLRVLARNYLDVYPFDKWESSQQLPDYRLG 471
Query: 468 DLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
+ +++ +T+PP YLTE ELISLM+ +GIGTDA++ HI I +R YV
Sbjct: 472 ETFEPTEANLLDGETSPPAYLTEPELISLMDANGIGTDATMADHIETIKERQYV 525
>gi|326474803|gb|EGD98812.1| DNA topoisomerase III [Trichophyton tonsurans CBS 112818]
Length = 630
Score = 314 bits (804), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 176/517 (34%), Positives = 268/517 (51%), Gaps = 18/517 (3%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLA 101
GP +G + MTSV GH+ DF +Y NW+ +P +LF+ L + +
Sbjct: 48 GPPWGSCSVV-MTSVLGHLTASDFEPRYRNWNSCNPSQLFAANVIIAVDKENLGIARNIK 106
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAM 160
+A+D L +W DCD+EGE+I EV R Q + +P + RA+FS + A
Sbjct: 107 RQARDSRALFIWTDCDREGEHIGSEV----RDQAVLGNPSIEIKRAKFSNTERTHVLEAA 162
Query: 161 WNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGF 220
++ + +A +V AR ELDLRIG AFTR QT Q G L +ISYG CQ PTLGF
Sbjct: 163 RRPIELDERQADAVAARIELDLRIGAAFTRLQTLQLQTLGGALAERIISYGSCQFPTLGF 222
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTV 280
V+R+ +++ FKPE +W + ++ +G+ V+ W RGH+FD++ + F+ K TV
Sbjct: 223 VVDRYMRVKNFKPEAFWSIKVSHTRDGITVNFNWQRGHLFDRAAVVILFERCLAAKTATV 282
Query: 281 VDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP 340
V SK +P L TV+L + S L + M+ AE LYT+G++SYPRTET Q+
Sbjct: 283 TKVNKKPTSKWRPLPLTTVDLQMMGSKYLRIDSQAIMKAAETLYTKGFISYPRTETDQFD 342
Query: 341 ENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGD 399
DL ++ +Q S WG++ R ++ G +PR+G++ HPPI P + T L+ +
Sbjct: 343 NEIDLKKLVEKQYPSEVWGEYARGLIGGGFKQPRRGRNNDKAHPPIHPVAYVSPTVLNAN 402
Query: 400 AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-N 458
++Y+++ R F+ D + DE F +L + V + + +
Sbjct: 403 EKKVYEFVTRRFLACCSEDAKGESTDIELQYGDEEFHTRGLVVLERNYLDVYVYDKWESS 462
Query: 459 ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQR 518
+ +P+F + + + E KT P YLTE ELI LM+ +GIGTDA++ HI+ I R
Sbjct: 463 QPLPNFVLNESFEPKEANITEGKTVAPGYLTEPELIGLMDANGIGTDATMADHISKIKAR 522
Query: 519 NYVTVTSGR----------RLVPTSLGIVLVHGYQKI 545
YV +PT LG+ LV GY +
Sbjct: 523 EYVATRPRGGGRGSGGRVDEFIPTKLGVALVEGYDNV 559
>gi|451997773|gb|EMD90238.1| hypothetical protein COCHEDRAFT_1104554 [Cochliobolus
heterostrophus C5]
Length = 669
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 168/474 (35%), Positives = 251/474 (52%), Gaps = 8/474 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
T V GHI+ DFT +Y W P+ LF P A K + + + +A+ L +
Sbjct: 55 FTCVAGHIVAQDFTDRYKKWHSCQPVSLFEAPIVSGIAEDKKAVASNIETQARYASILFI 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I E+ + + N VWRARFS I + A N ++ + +A+
Sbjct: 115 WTDCDREGEHIGTEIRDIA---LKANPNMQVWRARFSNIERAHVIQASQNPIRLDEAQAQ 171
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQG---KYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
+V AR ELDLR+G AFTR QT Q + G+ LISYG CQ PTLGF V+R+ ++R
Sbjct: 172 AVSARIELDLRLGAAFTRMQTLALQNMIPQQGEERGKLISYGSCQFPTLGFVVDRYLRVR 231
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKS 289
F PEP+W + + +G+ V W RGH+FD+ + + K TV +
Sbjct: 232 NFVPEPFWYIKVAHEKDGIDVKFNWRRGHLFDRMAVILIMERCLLSKTATVTKMAKKASK 291
Query: 290 KTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL 349
K KP L TVEL + S L M M++AE LYT+G++SYPRTET Q+ DL ++
Sbjct: 292 KWKPLPLTTVELQKNGSRFLRMTSQDVMKVAEELYTKGWISYPRTETDQFDRGMDLRTLV 351
Query: 350 RQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIV 408
+Q WG + +++ G +PR G++ HPPI P TQL+ +Y+++V
Sbjct: 352 GRQTQDGRWGPFAQNLMNGGFQQPRSGRNNDKAHPPIHPVNYVAPTQLNERERAVYEFVV 411
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPG 467
R F+ D V + E+F ++ + V + + ++++P + G
Sbjct: 412 RRFLACCSEDAVGEATDIEIEYGGEVFHAHGLRVIARNYLDVYPYDKWESSQALPQYAVG 471
Query: 468 DLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
+ + V MV+ +TT P YLTE ELI+LM+ +GIGTDA++ HI I +R YV
Sbjct: 472 EELKPTEVNMVDGQTTAPSYLTEPELIALMDANGIGTDATMAEHIAKIKEREYV 525
>gi|344301281|gb|EGW31593.1| DNA topoisomerase [Spathaspora passalidarum NRRL Y-27907]
Length = 613
Score = 312 bits (799), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 175/512 (34%), Positives = 265/512 (51%), Gaps = 12/512 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GHI+ L+ T N W +LF C + E K + ++ EA L++
Sbjct: 54 MTSVVGHIIRLE-TKPENRWGMCSHGKLFDC--DLVELVDKQDVFDNISKEAATANKLMI 110
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I FE+ +A +WR +FS + I A N ++ ++
Sbjct: 111 WTDCDREGEYIGFEIFKAANKGNRRIQIADIWRGKFSHLERNHIIRAANNPIRLDMKSVA 170
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V R E+D R+G +FTR T+ + + SYG CQ PTLGF V+R+ ++++F
Sbjct: 171 AVACRMEVDFRVGTSFTRLLTESLRQHNLIESKEVASYGTCQFPTLGFIVDRYKRVKSFV 230
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE +W +D+ + +G W++GH FD+ ++ K T+V ++S + +
Sbjct: 231 PEAFWFIDVEVMKDGTKSGFNWTKGHFFDRLYVLCLYERCLKHDFGTIVKLESKPTTNWR 290
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TVEL + S M A+ AE+LY GY+SYPRTET +YP D + +Q
Sbjct: 291 PLPLTTVELQKDCSRYFKMSAKRALDAAEKLYNNGYISYPRTETDKYPPTMDFRGIFEKQ 350
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDG-DAWRLYDYIVRH 410
+ WG + ++LS+G PR G D HP I P LD D ++Y+Y+VR
Sbjct: 351 KQDSRWGSYANDLLSSGHQMPRNGSHDDKAHPAIHPVNYVNLAALDNQDQRKVYEYVVRR 410
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDL 469
F+ D V A DE+FT +L + V + + ++ +P F G+
Sbjct: 411 FLACCSKDAVGMSTTATLKWGDELFTASGLMVLERNYLDVFIYKKWESSKQLPSFTEGEQ 470
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT---VTSG 526
I I S KM E KT PP+++TESELI+LM+ +GIGTDA+I HI I R Y+ V
Sbjct: 471 IKISSGKMKEGKTAPPNHMTESELIALMDANGIGTDATIAEHIEKILTRRYIAKQKVGKN 530
Query: 527 RRLVPTSLGIVLVHGYQKIDRE---LVEPTMR 555
+VP+ LG+ L+ G+ K++ E L +P +R
Sbjct: 531 EYIVPSKLGMGLIEGFDKLEFENISLSKPFLR 562
>gi|342885903|gb|EGU85855.1| hypothetical protein FOXB_03703 [Fusarium oxysporum Fo5176]
Length = 656
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 174/476 (36%), Positives = 250/476 (52%), Gaps = 7/476 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MT V GH+ +DFT + NW + P LF+ P + K + L ++A+ + LV+
Sbjct: 55 MTCVTGHLTNVDFTPAHKNWYQPPPESLFTAPIVTSVSEDKKTIAQNLESQARYAQALVI 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPK-TVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I E++EA R P V RARFS + + +A NL + +
Sbjct: 115 WTDCDREGEHIGNEIVEAARK----GKPGIQVLRARFSNVERAHVISAAKNLATLDERQV 170
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V AR ELDLRIG AFTR+ T + G ++ +SYG CQ PTLGF V+R+ +++ F
Sbjct: 171 HAVSARIELDLRIGYAFTRFLTNNLRPLGGPMEKLTLSYGSCQFPTLGFVVDRYFRVKNF 230
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
PEP+W + L +G V W R +FD+ + + ++ K TV VQ K
Sbjct: 231 VPEPFWSIKLMHTRDGKKVDFFWLRNRLFDRMSTVILYERCLAAKTATVTKVQQKPTRKF 290
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
KP L TVEL + A+ L M AM IAE LY +G++SYPRTET ++ + +L A++ +
Sbjct: 291 KPLPLTTVELQKAATRLLQMSGQQAMTIAEGLYNKGFISYPRTETDRFDKGMNLRALVEK 350
Query: 352 QESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRH 410
Q S WG + + S +PR+G+ D HPPI P A+ + L D RLY+Y+ R
Sbjct: 351 QTSDQRWGSFAQNLASGAFKQPREGRHDDKAHPPIHPITYASPSILSRDEARLYEYVARR 410
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE-SIPDFKPGDL 469
F+ D + +E F +L + V + N +P F G+
Sbjct: 411 FLACCSDDAHGMATDVELEFGEERFNAHGVIVLERNYLDVFIYEKWNNTVELPKFTEGER 470
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS 525
M E KTT P YLTES+LI+LM+ +GIGTDA++ HI I R YV S
Sbjct: 471 FQPTEAMMTEGKTTAPGYLTESDLIALMDANGIGTDATMAEHIQKIQDREYVATIS 526
>gi|428672326|gb|EKX73240.1| DNA topoisomerase III, putative [Babesia equi]
Length = 622
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 170/516 (32%), Positives = 275/516 (53%), Gaps = 9/516 (1%)
Query: 46 GDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAK 105
G++ TSV GH+ L+F Y+NW++ ELF+ PT + + + AK
Sbjct: 47 GEVSKMYFTSVKGHLSSLEFDPSYSNWNRTPIHELFTAPTYQIIIKDCKDIEKNIQYYAK 106
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
C+ ++LWLDCD+EGE I FEV+E R + + RA FSA+T DI+ A NL +
Sbjct: 107 LCDKMILWLDCDREGEAIAFEVIEVFR---GVQKSSNIKRAVFSAVTRSDIEQACCNLRE 163
Query: 166 PNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERH 225
P+I A++V+ RQE+DLRIG A TR+ T ++ + + ++++SYGPCQ PTLGF V+R
Sbjct: 164 PDINLAKAVETRQEIDLRIGSAMTRFMTLKYK-HFLNTKSNVLSYGPCQLPTLGFVVDRF 222
Query: 226 DKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS 285
+I F E YW +++ + L VS W R +FD ++ + V +
Sbjct: 223 KRIENFVREEYWSINVEVVLEETPVSFLWDRVRLFDGQAVLTLYEVCLENPLAFVTRINK 282
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDL 345
K P L+TVE+ + L + MQ+AE LY++G++SYPRTET +P++ DL
Sbjct: 283 RQTKKYPPLPLDTVEMNKTVCKYLKISSSQCMQLAESLYSKGFISYPRTETNIFPQSIDL 342
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDA-WRL 403
++++ + P +G++ + ++ P GK + HPPI P K T ++ + W+L
Sbjct: 343 MSLINSLSNHPTFGEYAKRLVDGDFCVPVMGKKNDEAHPPIHPVKSMTSSEAESPLHWQL 402
Query: 404 YDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPD 463
Y+YI R F+ V + + V+ E F + + + + T+ + +P+
Sbjct: 403 YEYITRRFLACCSKAAVGDESMIFLDVSGEGFHTKGMVIREYNWLDIYTYEKWEGRIVPN 462
Query: 464 FKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV 523
F G I + + KT PP L+E+ LI LM K+GIGTDA++ HI I R+Y
Sbjct: 463 FSQGQEITPTKITLKNGKTNPPALLSEANLIDLMNKNGIGTDATMHEHIQKIQDRHYAVK 522
Query: 524 TSGRRLVPTSLGIVLVHGYQKIDR---ELVEPTMRS 556
R +PT+LG L + +++ +L +P +R+
Sbjct: 523 NEKLRFIPTNLGKALYNAFKEYTASSIDLTKPALRA 558
>gi|346327587|gb|EGX97183.1| DNA topoisomerase III [Cordyceps militaris CM01]
Length = 612
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 167/471 (35%), Positives = 255/471 (54%), Gaps = 5/471 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MT+V GH+ L+FT ++ NW P LF P K + LA +A+ LV+
Sbjct: 1 MTAVIGHLTNLEFTPEHKNWSFPPPESLFHAPVVTSVYDDKKNIAQNLAEQARFARLLVI 60
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I E+++A + N+ V RARFS + + A L+ + +
Sbjct: 61 WTDCDREGEHIGQEIVDAAKKG---NAQLQVKRARFSNVERAHVLTAATRLINLDEKQVN 117
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V AR ELDLRIG AFTR+ T + G ++ +SYG CQ PTLGF V+R+ +++ F
Sbjct: 118 AVAARMELDLRIGYAFTRFMTNNLRPLGGPMENLTLSYGSCQFPTLGFVVDRYFRVKNFV 177
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PEP+W + +T + VS +WSR +FD+ T + ++ K + VQ + K
Sbjct: 178 PEPFWSIKVTHSRERKQVSFSWSRSRLFDRMTTIILYERCLAAKLAKITKVQEKPTRRFK 237
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TVEL + A+ L M AM IAE LY +G++SYPRTET ++ + +L ++++Q
Sbjct: 238 PLPLTTVELQKAATRLLRMSGQQAMTIAEGLYNKGFISYPRTETDRFDKGINLRTLVQKQ 297
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
WG+ + +++ G +PR+G+ D HPPI P A + L+ D RLY+Y+VR F
Sbjct: 298 TPDQRWGEFAQGLVNGGFQQPREGRHDDKAHPPIHPITYAAPSVLNHDEGRLYEYVVRRF 357
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES-IPDFKPGDLI 470
+ D + + +EMF+ +L + V + + + +P F G+
Sbjct: 358 LACCSEDAKGSATEIELQFGEEMFSAHGVIVLERNYLDVYVYEKWNDTAELPKFTVGEQF 417
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
M E KT PP YLTE++LI+LM+ +GIGTDA++ HI I R Y
Sbjct: 418 QPTEAMMTEGKTGPPSYLTEADLIALMDANGIGTDATMAEHIQKIQDREYA 468
>gi|358378931|gb|EHK16612.1| hypothetical protein TRIVIDRAFT_162256 [Trichoderma virens Gv29-8]
Length = 660
Score = 311 bits (797), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 172/471 (36%), Positives = 257/471 (54%), Gaps = 8/471 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MT V GH+ ++FTS+Y NW P LF+ P + K + +A++AK LV+
Sbjct: 55 MTCVTGHLTNVEFTSEYKNWSHPPPESLFTAPIV---TSDKKDIAKNIADQAKYARLLVI 111
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I E+++A + N+ V RA+FS + + +A L++ + +
Sbjct: 112 WTDCDREGEHIGQEIVDAAKKG---NAGIQVKRAKFSNVERAHVLSAARRLIELDEKQVN 168
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V AR ELDLRIG AFTR+ T + G L ++SYG CQ PTLGF V+R+ +++ F
Sbjct: 169 AVAARIELDLRIGYAFTRFITNNLKHLGGPLADLVLSYGSCQFPTLGFVVDRYFRVKNFV 228
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PEP+W + L N G V +W+R +FD+ T + ++ K V VQ K K
Sbjct: 229 PEPFWGISLMHNKEGKQVRFSWARNRLFDRMTVVLLYERCLAAKKAKVTKVQEKPTRKFK 288
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TVEL + A+ L M AM IAE LY +G++SYPRTET ++ + +L A++++Q
Sbjct: 289 PLPLTTVELQKAATRLLRMSGQQAMTIAEGLYNKGFISYPRTETDRFDKGMNLKALVQKQ 348
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
+ WG + +++ G +PR+GK D HPPI P T L D RLY+Y+ R F
Sbjct: 349 TTDQRWGPFAQGLVNGGFQQPREGKHDDKAHPPIHPIAHVAPTTLTYDEGRLYEYVTRRF 408
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES-IPDFKPGDLI 470
+ D DE F+ +L + V + + + +P F G+
Sbjct: 409 LACCAEDAKGMATDIDVQFGDEHFSTRGVIVLERNYLDVYIYENWTDTTELPRFTVGEQF 468
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
M E KT+PP+YLTE++LI+LM+ +GIGTDA++ HI I R YV
Sbjct: 469 EPTEAMMTEGKTSPPNYLTEADLIALMDANGIGTDATMAEHIQKIQDREYV 519
>gi|393217722|gb|EJD03211.1| prokaryotic type I DNA topoisomerase [Fomitiporia mediterranea
MF3/22]
Length = 1081
Score = 311 bits (797), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 183/527 (34%), Positives = 273/527 (51%), Gaps = 27/527 (5%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
F +T+V GH+M DF Y +W DP LF P R A + L EA+ + L
Sbjct: 49 FTVTAVSGHLMEHDFDEAYRSWGSCDPFTLFEAPVIARIAGDNKTIEENLKKEARRADEL 108
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
++W DCD+EGENI EV+ R +N V RARFSAI + I A N + +
Sbjct: 109 MIWTDCDREGENIGAEVVRVCRK---VNVGIRVTRARFSAIIPQQIHRAAQNPGLLDQAQ 165
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLD--ASLISYGPCQTPTLGFCVERHDKI 228
A +V+AR LDLR+G AFTR QT Q ++ + + +SYGPCQ PTLGF V R++++
Sbjct: 166 ADAVEARTILDLRLGAAFTRMQTLNLQRRFEQIKDTGTPVSYGPCQFPTLGFVVSRYEQV 225
Query: 229 RTFKPEPYWLLDLTLNLNGVAVS--------------VTWSRGHIFDKSTCNVFFKAVEK 274
+ F PE +W + L+L+ +G +V +W R +FD+ ++ V +
Sbjct: 226 QAFVPEAFWYIYLSLSRSGASVEKGGKKKNGEEETTEFSWRRVRLFDRLAAEAIYEYVVE 285
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRT 334
V K KP L T+EL + S L + P + IAE+LY +G +SYPRT
Sbjct: 286 NPVARVTKKTCKPTKKWKPLPLTTIELQKAGSRLLRLAPKTVLDIAEKLYQRGLLSYPRT 345
Query: 335 ETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATR 393
ET QY FD ++++ +Q P WG ++ + + PRKGK+ HPPI PT A
Sbjct: 346 ETDQYDPQFDFMSLIGKQTVDPTWGGFATQLQNGEFTSPRKGKNNDKAHPPIHPTNYA-- 403
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
L GD R+Y+++ R F+ + D + + E F+ +L + V +
Sbjct: 404 GNLAGDEKRVYEFVTRRFLASCHKDAEGQETTVEVCCGGEYFSASGLIVLARNYLDVYVY 463
Query: 454 SAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
+P+F G+ ++ E +T+ P LTE++L+ LM+K+GIGTDA+I HI
Sbjct: 464 DKWNGRYLPNFDEGEQFMPSICELREGETSSPTLLTEADLVGLMDKNGIGTDATIAQHIQ 523
Query: 514 NICQRNYVTVTSG---RRLVPTSLGIVLVHGYQKI--DRELVEPTMR 555
+ R YV + LVP++LGI LV GY +I +R L +P +R
Sbjct: 524 MVTDRGYVIERMEGVVKYLVPSTLGIGLVEGYNEIGFERSLSKPQLR 570
>gi|345568376|gb|EGX51270.1| hypothetical protein AOL_s00054g340 [Arthrobotrys oligospora ATCC
24927]
Length = 652
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 191/551 (34%), Positives = 268/551 (48%), Gaps = 47/551 (8%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MT+V GH +DF ++ W DP+ELF P K K + + EA++ L +
Sbjct: 55 MTAVQGHTEEIDFVDRFRKWSDCDPVELFDAPITKNIEKDKRSIADNIQKEARNATILFI 114
Query: 113 WLDCDKEGENICFEVME-AVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE I EV A R NI V RA+FS I + A N + +A
Sbjct: 115 WTDCDREGEYIGTEVRTFAKRGNPNIQ----VKRAQFSNIEKSHVIRAAHNPKDLDERQA 170
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V AR ELDLRIG A TR+Q+ QG++G +LISYG CQ PTLGF VER+ +++ F
Sbjct: 171 LAVSARMELDLRIGAALTRFQSLKLQGRWGLAGDALISYGSCQFPTLGFVVERYMRVKNF 230
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
PEP+W L L +G + + W R +FD+ + F++ V V K
Sbjct: 231 VPEPFWSLKLMHTRDGTSTTYNWDRSRLFDRMAVVLLFESCMSSPDALVKSVARKPTRKY 290
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
KP L TVEL + S LGM M+ AE LYT G++SYPRTET QY + +L A++ +
Sbjct: 291 KPLPLTTVELQKQGSRFLGMNSQRVMKAAEGLYTSGFISYPRTETDQYDQAVNLQALIGK 350
Query: 352 QESSP---DWGDHVREVLSNGISKPRKGKDVGD-HPPITPT-KLATRTQLDGDAWRLYDY 406
Q + WGD+ +L +PR+GK+ HPPI P A+ D D ++Y++
Sbjct: 351 QTNDTGGWGWGDYATGLLDGAFEQPRRGKNNDKAHPPIHPVAYAASAALADADQRKVYEF 410
Query: 407 IVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFK 465
+VRHF+ D + E F +L + V W + ++ +P ++
Sbjct: 411 VVRHFLACCSEDAIGETTTVNIDYGGEGFHASGLTVLERNYLDVYPWDRWESSQMLPRYQ 470
Query: 466 PGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS 525
G+ V M + KT+ P YLTE ELI+LM+ +GIGTDA++ HI I QR YV S
Sbjct: 471 EGERFVPNEVTMTDGKTSAPGYLTEPELIALMDANGIGTDATMAEHIEKIQQREYVFCIS 530
Query: 526 G----------------------------------RRLVPTSLGIVLVHGYQKIDRE--L 549
G VP++LG+ LV Y I E L
Sbjct: 531 GGGKSTGTSRGRGRGRGRGGRDAGGSGRAEGGGGKNVFVPSNLGVALVEAYDTIAAEMSL 590
Query: 550 VEPTMRSAYRV 560
P +R V
Sbjct: 591 SRPFLRKEMEV 601
>gi|154278056|ref|XP_001539853.1| DNA topoisomerase III [Ajellomyces capsulatus NAm1]
gi|150413438|gb|EDN08821.1| DNA topoisomerase III [Ajellomyces capsulatus NAm1]
Length = 632
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 178/507 (35%), Positives = 266/507 (52%), Gaps = 18/507 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ LDF S+Y W+ P LF P A L + + A++ + L +
Sbjct: 58 MTSVLGHLTSLDFDSQYRGWNSCPPGLLFDAPVVDSVAKDNLTIAENIRTLARNSKALFI 117
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I EV R+Q ++P+ + RARFS I A N ++ + +A
Sbjct: 118 WTDCDREGEHIGTEV----RYQARKSNPRIEIKRARFSNTERAHILQAATNPIELDDSQA 173
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISY--GPCQTPTLGFCVERHDKIR 229
+V AR ELDLRIG AFTR QT + G L+ +ISY G CQ PTLGF V+R+ +++
Sbjct: 174 NAVAARIELDLRIGAAFTRLQTLQLKSLGGVLEDRVISYVPGSCQFPTLGFVVDRYFRVK 233
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKS 289
FKPE +W + ++ +G V+ W R H++D++ + F+ K V +
Sbjct: 234 NFKPEKFWTIKVSHVRDGKTVNFLWRRVHLYDRAAVVILFERCLTSKTAKVTKMHKKPTR 293
Query: 290 KTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL 349
K +P L TV+L + S L M M+IAE LYT+G++SYPRTET Q+ + DL ++
Sbjct: 294 KWRPLPLTTVDLQMMGSRYLRMDSQKVMKIAETLYTKGFISYPRTETDQFDKGIDLKKLI 353
Query: 350 RQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIV 408
+Q S +WG + + +++ ++PR G + HPPI P A T L D +Y+++
Sbjct: 354 EKQIPSENWGQYAQRLINGSFTQPRAGHHNDKAHPPIHPVIFAAPTVLSNDERLVYEFVT 413
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPG 467
R F+ D + DE+F +L + V + + ++ IP F G
Sbjct: 414 RRFLACCSEDAKGESTEVEIKYGDEIFHTHGLLVLERNYLDVYVYDKWESSQEIPPFTLG 473
Query: 468 DLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT--- 524
++ K+ + KT P YLTE ELI LM+ +GIGTDA++ HI I +R YV
Sbjct: 474 EVFEPTEAKITDGKTVAPGYLTEPELIGLMDANGIGTDATMADHIAKIKEREYVATRPRG 533
Query: 525 SGR------RLVPTSLGIVLVHGYQKI 545
GR +PT LG+ LV GY +
Sbjct: 534 GGRGNNAVQEFIPTQLGVALVEGYDNV 560
>gi|408398943|gb|EKJ78068.1| hypothetical protein FPSE_01529 [Fusarium pseudograminearum CS3096]
Length = 666
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 186/559 (33%), Positives = 274/559 (49%), Gaps = 54/559 (9%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MT V GH+ +DFT +W P LF+ P + K + L ++A+ + LV+
Sbjct: 55 MTCVTGHLTNVDFTPANKSWYSPPPESLFTAPIVTTISDDKKTIAQNLESQARYAQVLVI 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I E++EA R P V RARFS I + +A NL + +
Sbjct: 115 WTDCDREGEHIGNEIVEAARK----GKPGIRVLRARFSNIERAHVISAARNLTTLDERQV 170
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V R ELDLRIG AFTR+ T + G L+ +SYG CQ PTLGF V+R+ +++ F
Sbjct: 171 NAVATRIELDLRIGYAFTRFLTNNLRKLGGPLEGLTLSYGSCQFPTLGFVVDRYFRVKNF 230
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
PEP+W + LT N +G V +W R +FD+ + + ++ K TV VQ K
Sbjct: 231 VPEPFWSIKLTHNRDGKKVDFSWLRNRLFDRMSTVILYERCLAAKTATVTKVQQKPTRKF 290
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
KP L TVEL + A+ L M AM IAE LY +G++SYPRTET ++ +L A++ +
Sbjct: 291 KPLPLTTVELQKAATRLLHMSGQQAMTIAEGLYNKGFISYPRTETDRFDRGMNLRALVDK 350
Query: 352 QESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRH 410
+ WG + +++ +PR+G+ D HPPI P A+ T L+ D RLY+Y+VR
Sbjct: 351 HTNDQRWGPFAQNLVNGAFQQPREGRNDDKAHPPIHPITYASPTVLNRDEGRLYEYVVRR 410
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE-SIPDFKPGDL 469
F+ D + DE F +L + V + N +P F G+
Sbjct: 411 FLACCSDDAKGMASDVEVEFGDERFNAHGVIVLERNYLDVFVYEKWNNTVELPRFTEGER 470
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV------ 523
M E KT+ P +LTE++LI+LM+ +GIGTDA++ HI I R Y
Sbjct: 471 FQPTEAMMTEGKTSAPGFLTEADLIALMDANGIGTDATMAEHIQKIQDREYAATIGRSGP 530
Query: 524 ----------------------------------TSGRR-----LVPTSLGIVLVHGYQK 544
TSG R VPT LG+ L+ G+ +
Sbjct: 531 APGDDEESDTGPPTRGRGRGRGGRGSRGGRGGASTSGGRGGIKVFVPTQLGVALILGFDR 590
Query: 545 IDRE--LVEPTMRSAYRVQ 561
++ E L +P +R ++
Sbjct: 591 MNFETSLGKPFLRKEMEIK 609
>gi|302832397|ref|XP_002947763.1| hypothetical protein VOLCADRAFT_79791 [Volvox carteri f.
nagariensis]
gi|300267111|gb|EFJ51296.1| hypothetical protein VOLCADRAFT_79791 [Volvox carteri f.
nagariensis]
Length = 936
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 179/534 (33%), Positives = 283/534 (52%), Gaps = 26/534 (4%)
Query: 46 GDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAK 105
G + TSV GH+M ++F Y W ++L+SCP +KR + L L ++
Sbjct: 49 GHPAVMVFTSVAGHLMEVEFPDGYRKWHGCSDVDLYSCPVDKRVPQDRTDLKRQLEQLSR 108
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
C++LVLWLDCD+EGENI FEVM R N + RARFSA+ ++++ AM L +
Sbjct: 109 QCQWLVLWLDCDREGENISFEVMAVCR---AANPRLVIRRARFSALIPRELQRAMATLGQ 165
Query: 166 PNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG-------------DLDASLISYGP 212
PN +A +VDARQE+DLRIG +FTR+QTK + ++ D A ++SYGP
Sbjct: 166 PNANDAAAVDARQEIDLRIGASFTRFQTKQLRDRFDLSGIAAVRERIQQDGRAPVLSYGP 225
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLN----LNGVAVSVTWSRGHIFDKSTCNVF 268
CQ PTLG V+R +++ E +W + + G + W+RG +FD++ ++
Sbjct: 226 CQFPTLGIIVQRAWEVQNHVREQFWTIHVAYREAPTAGGGSCVFEWARGRLFDEAVAEMY 285
Query: 269 FKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGY 328
++ E+ VV V+ +T+++ P L+T+E+ + A++ L M M++AE LY G+
Sbjct: 286 YEICEEAGTAVVVSVRGTTRTRQAPAPLSTLEMQKRATAKLRMSGERIMKLAEELYQAGF 345
Query: 329 VSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGI-SKPR-KGKDVGDHPPIT 386
+SYPRTET + DL ++ + P WG H + +LS + +PR G D HPPI
Sbjct: 346 ISYPRTETDVFDPGMDLQGIVTEHTGDPRWGRHAQRILSGELWRQPRPGGHDDKAHPPIH 405
Query: 387 PTKLA-TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHP 445
PT+ + D +LY+++VRHF+ D V ++ + + E F +L
Sbjct: 406 PTRHSLGEHDWSHDKRQLYEFVVRHFLACCSKDAVGSETQVEIDIGGERFRTTGLMVLER 465
Query: 446 GFTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGT 504
+ V +S N+++P G +++ T PP L+E +LI+ ME +GIGT
Sbjct: 466 NWLDVYPYSGWGGNDNLPKLTVGQSFVPSEMRLRTGSTEPPPRLSERDLIAKMEAYGIGT 525
Query: 505 DASIPVHINNICQRNYVTVTSGR-RLVPTSLGIVLVHGYQKID-RELVEPTMRS 556
DA++ HI +R Y G PT LG L+ GY ++ +L +P +R
Sbjct: 526 DATVAEHIQKQLERGYAEKDEGALTFWPTPLGEALISGYCRMGLDDLWKPDLRG 579
>gi|46124677|ref|XP_386892.1| hypothetical protein FG06716.1 [Gibberella zeae PH-1]
Length = 695
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 186/559 (33%), Positives = 274/559 (49%), Gaps = 54/559 (9%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MT V GH+ +DFT +W P LF+ P + K + L ++A+ + LV+
Sbjct: 55 MTCVTGHLTNVDFTPANKSWYSPPPESLFTAPIVTTISEDKKTIAQNLESQARYAQVLVI 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I E++EA R P V RARFS I + +A NL + +
Sbjct: 115 WTDCDREGEHIGNEIVEAARK----GKPGIRVLRARFSNIERAHVISAARNLTTLDERQV 170
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V R ELDLRIG AFTR+ T + G L+ +SYG CQ PTLGF V+R+ +++ F
Sbjct: 171 NAVATRIELDLRIGYAFTRFLTNNLRKLGGPLEGLTLSYGSCQFPTLGFVVDRYFRVKNF 230
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
PEP+W + LT N + V +W R +FD+ + + ++ K TV VQ K
Sbjct: 231 VPEPFWSIKLTHNRDSKKVDFSWLRNRLFDRMSTVILYERCLAAKTATVTKVQQKPTRKF 290
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
KP L TVEL + A+ L M AM IAE LY +G++SYPRTET ++ +L A++ +
Sbjct: 291 KPLPLTTVELQKAATRLLHMSGQQAMTIAEGLYNKGFISYPRTETDRFDRGMNLRALVDK 350
Query: 352 QESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRH 410
+ WG + +++ G +PR+G+ D HPPI P A+ T L+ D RLY+Y+VR
Sbjct: 351 HTNDQRWGPFAQNLVNGGFQQPREGRNDDKAHPPIHPITYASPTVLNRDEGRLYEYVVRR 410
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE-SIPDFKPGDL 469
F+ D + DE F +L + V + N +P F G+
Sbjct: 411 FLACCSDDAKGMASDVEVEFGDERFNAHGVIVLERNYLDVFVYEKWNNTVELPRFTEGER 470
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV------ 523
M E KT+ P +LTE++LI+LM+ +GIGTDA++ HI I R Y
Sbjct: 471 FQPTEAMMTEGKTSAPGFLTEADLIALMDANGIGTDATMAEHIQKIQDREYAATIGRSGP 530
Query: 524 ----------------------------------TSGRR-----LVPTSLGIVLVHGYQK 544
TSG R VPT LG+ L+ G+ +
Sbjct: 531 APGDGEEPDTGPPTRGRGRGRGGRGSRGGRGGASTSGGRGGIKVFVPTQLGVALILGFDR 590
Query: 545 IDRE--LVEPTMRSAYRVQ 561
++ E L +P +R ++
Sbjct: 591 MNFETSLGKPFLRKEMEIK 609
>gi|156096432|ref|XP_001614250.1| DNA topoisomerase III alpha [Plasmodium vivax Sal-1]
gi|148803124|gb|EDL44523.1| DNA topoisomerase III alpha, putative [Plasmodium vivax]
Length = 666
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 184/560 (32%), Positives = 280/560 (50%), Gaps = 63/560 (11%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+ F KY NW DP ELF K K+ L N +K C L+L
Sbjct: 56 VTSVTGHLTEQKFDDKYRNWVNTDPQELFDAEITIYVENDKKKIENNLKNYSKFCSLLIL 115
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGE+ICFEV+ +N + RA+FSA+T KDI A+ NL PN A
Sbjct: 116 WLDCDREGEHICFEVINTC---FAMNREIKIKRAQFSAVTQKDIIHAINNLKYPNRNLAY 172
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDL---DASLISYGPCQTPTLGFCVERHDKIR 229
SVD R+E+DLR+G FTR F +Y L + S+ISYGPCQ PTLGF V R+ I+
Sbjct: 173 SVDVRREIDLRMGSIFTR----FLTIRYVHLIKTETSIISYGPCQFPTLGFVVNRYMDIK 228
Query: 230 TFKPEPYWLLDLTLNLNG------------------------------------------ 247
F E YW + + G
Sbjct: 229 NFVNEYYWSIKMQYWCEGGGHSGDESEGGASLGRKKRKRNGKNSAVMKNGKKSETMKKMA 288
Query: 248 -----VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELM 302
V TWSR ++D + ++ + K + ++ + K +P LNT+++
Sbjct: 289 GASQNTVVDFTWSRLRLYDHLAVVLIYEELLKNPLCRITNIYENQVKKYRPLPLNTLQMT 348
Query: 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHV 362
++ S + M IAE+LY +G++SYPRTET +P + +L +++ + + S +G +
Sbjct: 349 KLVSRHFHISSKQCMNIAEKLYNRGFISYPRTETNYFPSSMNLRSIVAELKKSKVFGSYA 408
Query: 363 REVLS-NGISKPRKGK-DVGDHPPITPTKLATRT-QLDGDAWRLYDYIVRHFIGTLCGDL 419
+++ N +PRKG+ + HPPI P K RT +++ W +Y+ I RHF+ D
Sbjct: 409 KKLCEGNNFREPRKGRLNDQAHPPIHPVKNMHRTDKVEEREWAIYELICRHFLAVCSDDA 468
Query: 420 VYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVE 479
+ ++ E F + ++ + + + ++ +P F+ S+ + E
Sbjct: 469 IGFNSKVVATIGKEEFFCKGLKIVKKNYLEIYIYEKWNDKILPPFQVNQEFYPYSLLVDE 528
Query: 480 RKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
T PP YL+E +L+SLM+K+GIGTDA++ HI NI +RNYV +PT+LGI LV
Sbjct: 529 GMTQPPKYLSECDLLSLMDKYGIGTDATMHEHIENIQKRNYVFKNKKNLFIPTNLGIALV 588
Query: 540 HGYQK---IDRELVEPTMRS 556
Y+K I +L EP++R+
Sbjct: 589 LSYKKFKDIGVDLTEPSLRA 608
>gi|156087759|ref|XP_001611286.1| DNA topoisomerase family protein [Babesia bovis]
gi|154798540|gb|EDO07718.1| DNA topoisomerase family protein [Babesia bovis]
Length = 633
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 182/538 (33%), Positives = 284/538 (52%), Gaps = 25/538 (4%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
V+ + PL G TSV GH+M +DF ++Y NW + LF P + ++ +
Sbjct: 38 VYSFTAPLEGRHCKMYFTSVRGHLMEIDFDARYRNWQRTPIESLFCAPIQAAVSSNCKDI 97
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT---- 152
L + A+ C LVLWLDCD+EGE I +EVM + +NS + RA FSA+T
Sbjct: 98 EKNLLHYARMCSKLVLWLDCDREGEAIAYEVMAVCQR---VNSAIAIRRAIFSAVTRWSF 154
Query: 153 -------DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDA 205
+I+ A L +PN A++V+ARQE+DLRIG + TR+ T ++ + D ++
Sbjct: 155 ICDLDVVGHEIETACATLREPNPNLAQAVEARQEIDLRIGSSMTRFMTTRYRERI-DTES 213
Query: 206 SLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTC 265
++SYGPCQ PTLGF V+R KI +F+PE +W + + + G W R +FD+
Sbjct: 214 KVLSYGPCQLPTLGFVVDRFFKIESFQPESFWSIQVFIESGGKDYLFRWDRVKLFDRLAV 273
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
++A + V V + + + P L+TVE+ + A+ L + H +M++AE LY
Sbjct: 274 LTLYEACLENPMAKVTHVSNRSTKRYPPLPLDTVEMHKDAAMHLKISSHESMRLAESLYN 333
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPP 384
+GYVSYPRTET +P + +L ++ S P +G++ +L I PRKG K+ HPP
Sbjct: 334 KGYVSYPRTETNVFPSSMNLRDLVGMFSSHPLFGEYANRLLQGEII-PRKGNKNDEAHPP 392
Query: 385 ITPTKLATRTQLDG-DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLL 443
I P K R + + +W LY YI R F+ V + + ++ E F + +
Sbjct: 393 IHPVKPLRREEAESPQSWDLYVYITRRFLACCSPAAVGDESIVFLDISGEGFHAKGLVVR 452
Query: 444 HPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIG 503
+ + +++ IP + G + + + + T PP LTE++LI LM KHGIG
Sbjct: 453 ERNWLDIYPYASWNGTPIPAMEEGQELMPSRILLSDGCTRPPGLLTETDLIDLMNKHGIG 512
Query: 504 TDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGY-----QKIDRELVEPTMRS 556
TDA++ HI + R YV S L+PT+LG L + + Q+ID L +P +R+
Sbjct: 513 TDATMHEHIQKVQDRRYVKKESNFTLIPTNLGKALYNAFKSYAHQQID--LTKPNLRA 568
>gi|336273746|ref|XP_003351627.1| TOP3 protein [Sordaria macrospora k-hell]
gi|380095906|emb|CCC05953.1| putative TOP3 protein [Sordaria macrospora k-hell]
Length = 603
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 170/474 (35%), Positives = 254/474 (53%), Gaps = 7/474 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MT+V GH+ LDF ++ W+ P LF P + + + ++A+ + L +
Sbjct: 1 MTAVRGHLTQLDFHQEFKKWEYPPPDRLFDAPVQTSYPNDMKVIAQNIESQARQADILYI 60
Query: 113 WLDCDKEGENICFEVMEAVRH-QININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I E+ EA R + NI V+RARFS I I +A V + +A
Sbjct: 61 WTDCDREGEHIGSEIREAARKGKRNIQ----VFRARFSNIERAHILSAARRPVPLDERQA 116
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V AR ELDLRIG AFTR+ T Q G LD ++SYG CQ PTLGF V+R+ ++R F
Sbjct: 117 EAVAARIELDLRIGSAFTRFLTLSLQRLGGPLDGLVLSYGSCQFPTLGFVVDRYFRVRNF 176
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
PEP+W + + G V WSR +FD+ + +F++ K V D++ K
Sbjct: 177 VPEPFWSIKVMHEKEGAKVHFNWSRNRLFDRLSVLIFYERCLAAKIAKVTDIKEKQTKKW 236
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
KP L TVEL ++A+ L M AM +AE+LY +G++SYPRTET ++ + +L A++++
Sbjct: 237 KPLPLTTVELQKMATRFLRMTGQEAMTVAEKLYQKGFISYPRTETDRFDKGMNLRALVQK 296
Query: 352 QESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRH 410
WG ++ +PR+GK D HPPI P A T LD +LY+++VR
Sbjct: 297 HTQDHRWGPFAHNLVDGAFQQPRQGKNDDKAHPPIHPITYAAPTVLDEQERKLYEFVVRR 356
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES-IPDFKPGDL 469
F+ D + + +E F + + V + + +P F G+
Sbjct: 357 FLACCSEDARGATTDVEITYGEEKFVAHGLIVHQRNYLDVYPYENWTGTTELPRFTVGET 416
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV 523
M E KTT P+YLTE++LI+LM+ +GIGTDA++ HI I +R YV+V
Sbjct: 417 FEPTEAMMTEGKTTAPNYLTEADLIALMDANGIGTDATMAQHIEKIKERQYVSV 470
>gi|403369401|gb|EJY84543.1| DNA topoisomerase [Oxytricha trifallax]
Length = 894
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 180/522 (34%), Positives = 273/522 (52%), Gaps = 23/522 (4%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+M + F + W +L+ P K ++ L ++D E L L
Sbjct: 1 MTSVSGHLMRMKFPIENKIWIDSKIKDLYRMPVVKDLIDGNARVLQNLHEMSQDVEELHL 60
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGE I F+V + + +N V RA FSA+T +D+ A NL +PN A
Sbjct: 61 WLDCDREGEAIAFDVADMCKQ---VNKYMLVKRAHFSALTSQDVNKAAQNLQEPNKNLAD 117
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQG---KYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
+V ARQE+DLRIG +FT+ QT F+ K ++SYGPCQ PTLGF VER +KI+
Sbjct: 118 AVKARQEIDLRIGASFTQLQTLSFKDVLFKNSTSGNKILSYGPCQFPTLGFVVERANKIK 177
Query: 230 TFKPEPYWLLDL----------TLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
FK E W L+L + N + +R DK + + K +
Sbjct: 178 NFKSEITWRLELVHSYNTKEEGSENTTKQVIKFISTREKELDKKIIEDLYSKI-KGMNPA 236
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQY 339
V+DV + K + +P LNT+E ++ S LG HAM+ E LY + Y+SYPRTET Y
Sbjct: 237 VIDVTKTEKYRPRPTPLNTIEAQKLISKKLGFSSDHAMEYMEDLYRKAYISYPRTETNVY 296
Query: 340 PENFDLVAVLRQQESSPDWGDHVREVLS-NGISKPRKGK-DVGDHPPITPTKL---ATRT 394
+L ++++ + D+ +++L N PR GK D HPPI P + +
Sbjct: 297 HPTINLRRIIQELNNDKDYSGFTKKLLELNNYGGPRNGKQDDKAHPPIHPVRFMKEEDKV 356
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
L + ++YD I RHF+ ++ D V + V K + +E + + + + +
Sbjct: 357 NLPPNQVKVYDMICRHFLASVSKDAVAQETVVKIQIGEEQLQTQGLIVEKKNYLEIFPFD 416
Query: 455 AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINN 514
+ +PDFK G+ I S+K+ + T PP YL+ES+LI M+++GIGTDA+I HI
Sbjct: 417 TWDSTLLPDFKVGEQITYDSLKVAKTTTKPPQYLSESDLIDTMDQNGIGTDATIHEHIKK 476
Query: 515 ICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
I +R Y V G++ PT LG L+ Y++I ++ +P +R+
Sbjct: 477 IQERQYAMV-QGKKFKPTLLGQSLIDAYEEIGVDIHKPYLRA 517
>gi|336469613|gb|EGO57775.1| hypothetical protein NEUTE1DRAFT_81659 [Neurospora tetrasperma FGSC
2508]
Length = 662
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 185/567 (32%), Positives = 281/567 (49%), Gaps = 60/567 (10%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLA 101
GP +G + MT+V GH+ LDF ++ W+ P LF P + + +
Sbjct: 46 GPPWGRSTV-TMTAVRGHLTQLDFHQEFKKWEYPPPGRLFDAPVQTIYPHDMKTIAQNIE 104
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRH-QININSPKTVWRARFSAITDKDIKAAM 160
N+A+ + L +W DCD+EGE+I E+ EA R + NI V+RARFS I I +A
Sbjct: 105 NQARQADILYIWTDCDREGEHIGSEIREAARKGKRNIQ----VYRARFSNIERAHILSAA 160
Query: 161 WNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGF 220
V + +A +V AR ELDLRIG AFTR+ T + G + L+SYG CQ PTLGF
Sbjct: 161 RRPVALDDKQAEAVAARIELDLRIGSAFTRFLTLSLRPLGGAMADLLLSYGSCQFPTLGF 220
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTV 280
V+R+ ++R F PEP+W + + GV V+ WSR +FD+ + + ++ K V
Sbjct: 221 VVDRYFRVRNFVPEPFWSIKVMHEKEGVKVNFNWSRNRLFDRLSVLLLYERCLAAKIAKV 280
Query: 281 VDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP 340
+V+ K KP L TVEL ++A+ L M AM +AE+LY +G++SYPRTET ++
Sbjct: 281 TEVKEKQTKKWKPLPLTTVELQKMATRFLRMTGQEAMTVAEKLYNKGFISYPRTETDRFD 340
Query: 341 ENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGD 399
+ +L A++++Q WG + ++ +PR+G+ D HPPI P A T LD
Sbjct: 341 KGMNLRALVQKQTQDQRWGPFAQNLVDGAFQQPRQGRNDDKAHPPIHPITYAAPTVLDDQ 400
Query: 400 AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM---TWSAM 456
RLY+++VR F+ D + + +E F + + V W+
Sbjct: 401 EKRLYEFVVRRFLACCSEDARGAATDVEITYGEEKFVAHGLIVHQRNYLDVYPYENWTG- 459
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
+P F G+ M E KTT P YLTE++LI+LM+ +GIGTDA++ HI I
Sbjct: 460 -TAELPKFTVGETFEPTEAMMTEGKTTAPSYLTEADLIALMDANGIGTDATMAQHIEKIK 518
Query: 517 QRNYVTVTS----------------------------------------------GRRLV 530
+R YV V + +
Sbjct: 519 ERQYVQVVERGGNGGGGNDEDDGAAGGARGGRGGRGGRGRGGGRGGRGGGGVGGGVKEFI 578
Query: 531 PTSLGIVLVHGYQKIDRE--LVEPTMR 555
PTSLG+ L+ G+++++ E L +P +R
Sbjct: 579 PTSLGVALIEGFERMNFETSLGKPFLR 605
>gi|350290740|gb|EGZ71954.1| prokaryotic type I DNA topoisomerase [Neurospora tetrasperma FGSC
2509]
Length = 654
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 185/567 (32%), Positives = 281/567 (49%), Gaps = 60/567 (10%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLA 101
GP +G + MT+V GH+ LDF ++ W+ P LF P + + +
Sbjct: 38 GPPWGRSTV-TMTAVRGHLTQLDFHQEFKKWEYPPPGRLFDAPVQTIYPHDMKTIAQNIE 96
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRH-QININSPKTVWRARFSAITDKDIKAAM 160
N+A+ + L +W DCD+EGE+I E+ EA R + NI V+RARFS I I +A
Sbjct: 97 NQARQADILYIWTDCDREGEHIGSEIREAARKGKRNIQ----VYRARFSNIERAHILSAA 152
Query: 161 WNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGF 220
V + +A +V AR ELDLRIG AFTR+ T + G + L+SYG CQ PTLGF
Sbjct: 153 RRPVALDDKQAEAVAARIELDLRIGSAFTRFLTLSLRPLGGAMADLLLSYGSCQFPTLGF 212
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTV 280
V+R+ ++R F PEP+W + + GV V+ WSR +FD+ + + ++ K V
Sbjct: 213 VVDRYFRVRNFVPEPFWSIKVMHEKEGVKVNFNWSRNRLFDRLSVLLLYERCLAAKIAKV 272
Query: 281 VDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP 340
+V+ K KP L TVEL ++A+ L M AM +AE+LY +G++SYPRTET ++
Sbjct: 273 TEVKEKQTKKWKPLPLTTVELQKMATRFLRMTGQEAMTVAEKLYNKGFISYPRTETDRFD 332
Query: 341 ENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGD 399
+ +L A++++Q WG + ++ +PR+G+ D HPPI P A T LD
Sbjct: 333 KGMNLRALVQKQTQDQRWGPFAQNLVDGAFQQPRQGRNDDKAHPPIHPITYAAPTVLDDQ 392
Query: 400 AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM---TWSAM 456
RLY+++VR F+ D + + +E F + + V W+
Sbjct: 393 EKRLYEFVVRRFLACCSEDARGAATDVEITYGEEKFVAHGLIVHQRNYLDVYPYENWTG- 451
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
+P F G+ M E KTT P YLTE++LI+LM+ +GIGTDA++ HI I
Sbjct: 452 -TAELPKFTVGETFEPTEAMMTEGKTTAPSYLTEADLIALMDANGIGTDATMAQHIEKIK 510
Query: 517 QRNYVTVTS----------------------------------------------GRRLV 530
+R YV V + +
Sbjct: 511 ERQYVQVVERGGNGGGGNDEDDGAAGGARGGRGGRGGRGRGGGRGGRGGGGVGGGVKEFI 570
Query: 531 PTSLGIVLVHGYQKIDRE--LVEPTMR 555
PTSLG+ L+ G+++++ E L +P +R
Sbjct: 571 PTSLGVALIEGFERMNFETSLGKPFLR 597
>gi|340959518|gb|EGS20699.1| DNA topoisomerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 625
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 174/490 (35%), Positives = 259/490 (52%), Gaps = 7/490 (1%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLA 101
GP +G + MT+V GH+ L+F S YN W+ P LF P + +
Sbjct: 46 GPPWGRCSV-TMTAVKGHLTTLEFPSDYNRWEYPPPERLFDAPVYTVIPKDNKNIAKNIE 104
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMW 161
+ A+ L++W DCD+EGE+I E+ +A + N V RARFS + I A
Sbjct: 105 DLARSSNLLIIWTDCDREGEHIGSEIRDAAKKG---NRYIEVKRARFSNVERAHILQAAR 161
Query: 162 NLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
LV + + +V AR ELDLRIG AFTR+ T + G + ISYG CQ PTLGF
Sbjct: 162 RLVCLDERQVDAVAARIELDLRIGYAFTRFLTLNLRTLGGPMSQLTISYGSCQFPTLGFV 221
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV 281
V+R+ +++ F PEP+W + + +G+ V+ W+R +FD+ T +F++ K V+
Sbjct: 222 VDRYFRVKNFIPEPFWSIKVMHERDGIKVNFNWARHRLFDRMTVIIFYERCLTAKFAKVM 281
Query: 282 DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPE 341
V+ K KP L TVEL ++A+ LGM AM +AE+LY +G++SYPRTET ++ +
Sbjct: 282 KVKEKETKKWKPLPLTTVELQKMATRFLGMTGQQAMTVAEKLYNKGFISYPRTETDRFDK 341
Query: 342 NFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDA 400
DL A++R+Q WG + +L G +PR+GK D HPPI P A+ + LD
Sbjct: 342 GMDLKALVRKQTQDQRWGQFAQHLLDGGFQQPRQGKHDDKAHPPIHPITYASPSVLDDQE 401
Query: 401 WRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE- 459
R+Y+ + R F+ D + +E FT + + V +
Sbjct: 402 KRIYELVTRRFLACCSEDAKGAATDIEILYGEETFTAHGVIVKERNYLDVYPYENWTGTV 461
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
+P F G+ + E KT+PP+YLTE++LI+LM+ +GIGTDA++ HI I +R
Sbjct: 462 QLPKFTEGERFEPTEAMVTEGKTSPPNYLTEADLIALMDANGIGTDATMAEHIEKIQERQ 521
Query: 520 YV-TVTSGRR 528
Y TV G R
Sbjct: 522 YARTVERGNR 531
>gi|451847298|gb|EMD60606.1| hypothetical protein COCSADRAFT_163916 [Cochliobolus sativus
ND90Pr]
Length = 667
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 166/474 (35%), Positives = 247/474 (52%), Gaps = 8/474 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
T V GHI+ DF +Y W P+ LF P A K + + + +A+ L +
Sbjct: 55 FTCVAGHIVAQDFNDRYKKWHSCQPVSLFEAPIVSGIAEDKKVVASNIETQARYASILFI 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I E+ + + N VWRARFS I + A N ++ + +A+
Sbjct: 115 WTDCDREGEHIGTEIRDIA---LKANPNMQVWRARFSNIERAHVIQASQNPIRLDEAQAQ 171
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQG---KYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
+V AR ELDLR+G AFTR QT Q + G+ LISYG CQ PTLGF V+R+ ++R
Sbjct: 172 AVSARIELDLRLGAAFTRMQTLALQNMIPQQGEERGKLISYGSCQFPTLGFVVDRYLRVR 231
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKS 289
F PEP+W + + + + V W RGH+FD+ + + K TV +
Sbjct: 232 NFVPEPFWYIKVAHEKDSIDVKFNWRRGHLFDRMAVVLIMERCLLSKTATVTKMAKKPTK 291
Query: 290 KTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL 349
K KP L TVEL + S L M M++AE LYT+G++SYPRTET Q+ DL ++
Sbjct: 292 KWKPLPLTTVELQKNGSKFLRMTSQDVMKVAEDLYTKGWISYPRTETDQFDRGMDLRMLV 351
Query: 350 RQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIV 408
+Q WG + +++ G +PR G++ HPPI P TQL+ +Y+++V
Sbjct: 352 GRQTQDGRWGPFAQNLMNGGFQQPRAGRNNDKAHPPIHPVNYVAPTQLNDRERVVYEFVV 411
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI-PDFKPG 467
R F+ D V + E+F ++ + V + ++ + P + G
Sbjct: 412 RRFLACCSEDAVGEATDIEIEYGGEVFHAHGLRVIARNYLDVYPYDKWESSQVLPQYAVG 471
Query: 468 DLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
+ + V MV+ +TT P YLTE ELI+LM+ +GIGTDA++ HI I +R YV
Sbjct: 472 ERLEPTEVNMVDGQTTAPSYLTEPELIALMDANGIGTDATMAEHIAKIKEREYV 525
>gi|448115381|ref|XP_004202802.1| Piso0_001663 [Millerozyma farinosa CBS 7064]
gi|359383670|emb|CCE79586.1| Piso0_001663 [Millerozyma farinosa CBS 7064]
Length = 620
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 172/516 (33%), Positives = 274/516 (53%), Gaps = 18/516 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GHI +DF ++++ W + +P LF PT + ++ ++NEA+ C L++
Sbjct: 54 MTSVMGHITNIDFPTQFS-WGRCNPGRLFDAPTIDNVSNKEVY--ENISNEARRCNRLMI 110
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I E+ A + +WR++FS + I A N ++ ++
Sbjct: 111 WTDCDREGEFIGHEIFSAAVKGNPSLRVEDIWRSQFSHLERSHILQAARNPIRLDMNSVH 170
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGK--YGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
+V R E+DLR+G +FTR+ T ++ + ISYG CQ PTLGF V+R+++++
Sbjct: 171 AVRCRMEIDLRVGASFTRFLTDLYRRTQVFPLEKGGFISYGTCQFPTLGFVVDRYNRVKR 230
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
F PE +W + +T+ + + W++ H+FD+ + ++ K + VV + SK
Sbjct: 231 FIPEKFWYISITVKKDNKTETFHWTKNHVFDRLYLALIYQNCLKNDNAEVVQLIERPTSK 290
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
+P L TVEL + S M A+ AE+LY +G++SYPRTET ++P DL AV++
Sbjct: 291 YRPLPLTTVELQKNCSMYFKMSAKRALDAAEKLYNKGFLSYPRTETDRFPPTMDLKAVIQ 350
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLD-GDAWRLYDYIV 408
+Q + WG + E+L+ PR G D HPPI P LD D ++Y+ +V
Sbjct: 351 KQTQNSTWGQYASELLNGKFRSPRAGSHDDKAHPPIHPVNFVKLEMLDNADEKKVYELVV 410
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV---MTWSAMKNESIPDFK 465
R F+ D + E FT A +L F V MTW + +P
Sbjct: 411 RRFLACCSEDAKGKETKISLRWGAEEFTNSAIVVLERNFLDVYPYMTWKS--TTPLPPLL 468
Query: 466 PGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS 525
G+ I + S M E KT+PP ++TESELI+LM+ +GIGTDA+I HI+ I R YV
Sbjct: 469 KGETIKVASSVMKEGKTSPPQHMTESELIALMDANGIGTDATIAEHIDKIISRGYVVKVR 528
Query: 526 GRR---LVPTSLGIVLVHGYQKIDRE---LVEPTMR 555
+ ++P+ LG+ L+ G+ ++ + L +P +R
Sbjct: 529 KNKNDFIIPSELGMGLIEGFNDLEFDNLSLSKPFLR 564
>gi|221058465|ref|XP_002259878.1| DNA topoisomerase III [Plasmodium knowlesi strain H]
gi|193809951|emb|CAQ41145.1| DNA topoisomerase III, putative [Plasmodium knowlesi strain H]
Length = 661
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 185/557 (33%), Positives = 284/557 (50%), Gaps = 62/557 (11%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+ F KY NW DP LF K + L +K C L+L
Sbjct: 56 VTSVTGHLTEQKFDDKYRNWLNTDPQVLFDAEITIYVENDKKTIENNLKRYSKFCNLLIL 115
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGE+ICFEV+ +N + RA+FSA+T+KDI A+ NL PN A
Sbjct: 116 WLDCDREGEHICFEVINTC---FVMNRDLRIKRAQFSAVTEKDIIHAINNLKYPNRNLAN 172
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDL---DASLISYGPCQTPTLGFCVERHDKIR 229
SVD R+E+DLR+G FTR F +Y L ++ISYGPCQ PTLGF V R+ I+
Sbjct: 173 SVDVRREIDLRMGSIFTR----FLTIRYVHLIKTRTNIISYGPCQFPTLGFVVNRYMDIK 228
Query: 230 TFKPEPYWLLDLTL-------------------------------------------NLN 246
F E YW + + N N
Sbjct: 229 NFVNEYYWSIKMQYLWEDAEKSGDESDGDSSAWRKKKTKRKKKNEKEKKNKGKKEDTNQN 288
Query: 247 GVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVAS 306
+A TWSR ++D + ++ + K + ++ + K +P LNT+++ ++ S
Sbjct: 289 TIA-DFTWSRSRLYDHLAVVLIYEELLKNPLCRITNIYQNEVKKYRPLPLNTLQMTKLVS 347
Query: 307 SGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVL 366
+ M IAE+LY +G++SYPRTET +P + +L +++ + + + +G + ++
Sbjct: 348 KHFHISSKQCMNIAEKLYNKGFISYPRTETNSFPISMNLRSIVSELKKNNIFGSYANKLC 407
Query: 367 S-NGISKPRKGK-DVGDHPPITPTKLATRTQ-LDGDAWRLYDYIVRHFIGTLCGDLV-YT 422
N +PRKGK + HPPI P K +T ++ W +Y++I RHF+ D + +
Sbjct: 408 QGNNFKEPRKGKLNDKAHPPIHPVKNMQKTDGVEEKEWIIYEFICRHFLAVCSEDAIGFN 467
Query: 423 QKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKT 482
KV ++ E F + ++ + + + N++IP F+ S+ + E T
Sbjct: 468 SKVVA-TIGKEEFFCKGLKIVKKNYLEIYIYEKWNNKNIPPFEVNQEFHPYSLLVEEGIT 526
Query: 483 TPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGY 542
PP YL+ES+L+SLM+K+GIGTDA++ HI NI +RNYV S +PT+LGI LV Y
Sbjct: 527 QPPKYLSESDLLSLMDKYGIGTDATMHEHIENIQKRNYVFKNSKNLFIPTNLGIALVLSY 586
Query: 543 QK---IDRELVEPTMRS 556
+K I +L +P++R+
Sbjct: 587 KKFKDIGIDLTDPSLRA 603
>gi|392512614|emb|CAD25295.2| DNA TOPOISOMERASE III [Encephalitozoon cuniculi GB-M1]
Length = 722
Score = 305 bits (782), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 182/521 (34%), Positives = 282/521 (54%), Gaps = 24/521 (4%)
Query: 45 FGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEA 104
+G+ ++F TSV GH++ DF K + WD+VDP LF+ K +K+ + EA
Sbjct: 41 YGNQMVF--TSVLGHLLSSDFEEK-SRWDEVDPEVLFTDRIVKHVQPEFVKVKENIEREA 97
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLV 164
C+ +++W DCD+EGENI ++ + V I+ V RARFS IT +D+++A+ NL
Sbjct: 98 LKCDMVIIWTDCDREGENIGRQIRDIVLKVKKID----VRRARFSGITLRDVESALRNLG 153
Query: 165 KPNIFEARSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYGPCQTPTLGF 220
+ N EA +V+ R ELDLRIG AFTR QT + QGK ++S+GPCQ PTLGF
Sbjct: 154 EINEAEAEAVEVRIELDLRIGSAFTRLQTLSLGRARQGK------KILSFGPCQVPTLGF 207
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTV 280
VER + +F PE +W L G TW RG +FD++ FF ++ E +
Sbjct: 208 VVERARERESFVPEIFWTLKFKAMHKGFKDEFTWRRGPVFDRNCVVCFFNSLSGE-DARI 266
Query: 281 VDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP 340
V + K+K +P L TVEL + SS + H M+IAE LY +GY+SYPRTET +
Sbjct: 267 VSREVKEKTKYRPLPLRTVELQKKCSSYFRLSGHKVMEIAEGLYNRGYISYPRTETDVFD 326
Query: 341 ENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKLATRTQLDGD 399
FD +L + G++ +++ + PR GK+ H PI P K + L G
Sbjct: 327 RKFDFKHILGKLCKDSKVGEYASKLMGE-FNHPRNGKNNDMAHLPIYPLKEG--SGLSGS 383
Query: 400 AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
+YD++ R F+G + D + + + EMF + ++ + V + ++
Sbjct: 384 DRDIYDFVSRRFLGCIAKDAKGLETRYELKIGLEMFDLSGIRVIERNYLEVYYYDKWDDK 443
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
+ DF +++ +++ E +T+ P YL+E+ELI LM+K+GIGTDA+I HI I +R
Sbjct: 444 EVGDFAVEEIVS-GDLEIDEGETSAPKYLSEAELIGLMDKNGIGTDATIHEHIQKIQERG 502
Query: 520 YVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRV 560
Y V + P +LG L+ GY++ + +P +R + V
Sbjct: 503 Y-AVKVAEEIRPLNLGTALIEGYERFGLNVGKPELRKSLEV 542
>gi|384486567|gb|EIE78747.1| DNA topoisomerase [Rhizopus delemar RA 99-880]
Length = 480
Score = 304 bits (778), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 174/476 (36%), Positives = 264/476 (55%), Gaps = 25/476 (5%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
+ +E + + L +W DCD+EGE I +V + + ++ +WRA+FS++ I A
Sbjct: 8 IKSEVRSADVLFIWTDCDREGEAIGGDVKDLCQ---SVKPNIQIWRAQFSSMQPAAIHRA 64
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTK----FFQGKYGDLDASLISYGPCQT 215
N V+ ++ + +V+ RQELDLRIG AFTR QTK FF+ ++G ++SYG CQ
Sbjct: 65 ARNHVELDMKQVYAVNTRQELDLRIGAAFTRLQTKNLRSFFE-QFGK--KKMLSYGSCQF 121
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-------AVSVTWSRGHIFDKSTCNVF 268
PTLGF V+R+ +++ F PE +W + +T + + V W R H+FD+ C +
Sbjct: 122 PTLGFVVDRYQQVKNFIPEEFWKITMTYSQSNVQPGEQRLTTEFNWKREHLFDQWACFIL 181
Query: 269 FKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGY 328
++ +++ TV V+S SK KP L TVEL +V L M MQIAE LYT G
Sbjct: 182 YEKCVEKRVATVTKVKSKQTSKWKPLPLTTVELQKVGCRALHMSGSRIMQIAEELYTAGL 241
Query: 329 VSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITP 387
+SYPRTET Q+ NFD ++++ QQ + P WG + + +PR GK+ HPPI P
Sbjct: 242 ISYPRTETDQFDSNFDFMSLINQQTNDPRWGQYATLLRDGEFERPRNGKNNDKAHPPIHP 301
Query: 388 TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
T + L G+ ++Y++I R F+G + V + + + +E F + +L +
Sbjct: 302 T--SYDRNLSGEKLKVYEFIARRFLGACWKNAVGYETSVEAKIDEEYFDAKGLVILERNY 359
Query: 448 TGVMTWSAMKNESIPDFKPG-DLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDA 506
V + IP+F+ G + IP ++++M KT+PP LTE++LI LMEK+ IGTDA
Sbjct: 360 LEVYIYDKWTGNVIPEFQEGHEFIP-ETLEMKSGKTSPPKLLTETDLIGLMEKNEIGTDA 418
Query: 507 SIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRE--LVEPTMRSAYRV 560
+I HI I R YV G+ P +LGI LV GY +I E L +P +R V
Sbjct: 419 TIAEHIQKILDREYV-YKEGQFFKPLTLGIALVLGYNEIGLESSLNKPYLRRETNV 473
>gi|407924030|gb|EKG17090.1| DNA topoisomerase type IA [Macrophomina phaseolina MS6]
Length = 671
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 169/472 (35%), Positives = 247/472 (52%), Gaps = 8/472 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
T+V GH+ DF S+Y W+ P ELF P + A K + + A+DC+ L +
Sbjct: 57 FTAVAGHLTSQDFASQYRYWNSCRPQELFEAPIQTFVADDKKGIAQNIQALARDCDGLFI 116
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I E+ E R V RARFS I + A N V + A
Sbjct: 117 WTDCDREGEHIGTEIREWARKG---KRDIEVKRARFSNIERAHVINAARNPVDIDERAAN 173
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V AR ELDLRIG AFTR QT+ +ISYG CQ PTLGF V+R+ +++ F
Sbjct: 174 AVAARIELDLRIGAAFTRMQTQTLGAMI--QREGVISYGSCQFPTLGFVVDRYFRVKNFV 231
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PEP+W + + + V+ TW RGH+FD+ + F+ + V +Q SK +
Sbjct: 232 PEPFWNIKVMHVKEDIKVNFTWKRGHLFDRMAVTILFERCLAARTAKVAKMQKKPTSKWR 291
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TVEL ++ S L M M+ AE+LY G++SYPRTET Q+ ++ DL ++ +Q
Sbjct: 292 PLPLTTVELQKMGSRYLRMDSQAVMKAAEKLYQNGWISYPRTETDQFDKSMDLRRIIEKQ 351
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDA-WRLYDYIVRH 410
S DWG + + + G +PR G+ + HPPI P ++ + + R+Y+++VR
Sbjct: 352 HQSRDWGTYAQSLTGGGFRQPRNGRHNDQAHPPIHPVNFVEKSAIQNEQERRVYEFVVRR 411
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDL 469
F+ D + E F +L + V + + ++ +P F G++
Sbjct: 412 FLACCSEDAKGEATDVEIFYGSETFRTHGLKVLERNYLDVYPYDKWESSQQLPTFAVGEV 471
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
M E KT+PP YLTE ELISLM+ +GIGTDA++ HI I +R YV
Sbjct: 472 FEPTEANMGEGKTSPPGYLTEPELISLMDANGIGTDATMAEHIVKIKEREYV 523
>gi|149241681|ref|XP_001526340.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450463|gb|EDK44719.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 619
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 170/516 (32%), Positives = 277/516 (53%), Gaps = 16/516 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAF--LANEAKDCEFL 110
MTSV GHI LDF +Y W K LF+ T K F ++ EA++ + L
Sbjct: 54 MTSVVGHITNLDFPPEYL-WGKCAASRLFTAEI----VTKITKQDVFDNISKEARNSDQL 108
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
++W DCD+EGE I E+ +A R + + VWRARFS + + A + + ++
Sbjct: 109 MIWTDCDREGEFIGKEIFDAARKGNPRLTLRNVWRARFSHLDKSHVLRAARSPSELDMKS 168
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
A +V R E+D R+G +FTR T + ++SYG CQ PTLGF V+R+ ++++
Sbjct: 169 AAAVACRMEVDFRVGLSFTRLLTDSLKASRTIDTKDVVSYGTCQFPTLGFVVDRYKRVQS 228
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
FKPEP+W ++ T+ + W RGH+FD+ + +++ + + T+ +++ +
Sbjct: 229 FKPEPFWFIEPTVWKEKKKTTFNWCRGHVFDRFYVALQYESCLQHEFGTITKLETKRTTN 288
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
+P L TVEL + S M A++ AE LY +G++SYPRTET +YP + D +L
Sbjct: 289 WRPLPLTTVELQKDCSRYFKMSAKAALEAAESLYNRGFLSYPRTETDKYPSSMDFSGILE 348
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTK-LATRTQLDGDAWRLYDYIV 408
+Q+ WG + E+L G+ PR G D HP I P ++ T + + ++Y+Y+V
Sbjct: 349 KQKQDSRWGQYTLELLQRGLEAPRNGSHDDHAHPAIHPVNYVSLDTLTNANEKKVYEYVV 408
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPG 467
R F+ D V + +A DE FT +L + + + + ++ +P F+ G
Sbjct: 409 RRFLACCSKDAVGSMTLATLKWGDEFFTTSGLMVLERNYLDIFIYKKWESSKQLPTFQEG 468
Query: 468 DLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGR 527
+ + I + M E KT+PP +TE ELI+LM+ +GIGTDA+I HI+ I R YV
Sbjct: 469 EQVKISNGVMKEGKTSPPSLMTEPELIALMDVNGIGTDATIAEHIDKILSRKYVIKQKKG 528
Query: 528 R---LVPTSLGIVLVHGYQKIDRE---LVEPTMRSA 557
+ ++P+ LGI L+ G+ K++ L +P +R +
Sbjct: 529 KTDFIIPSGLGIGLIEGFDKMEFNGISLSKPFLRKS 564
>gi|164428822|ref|XP_956391.2| hypothetical protein NCU00081 [Neurospora crassa OR74A]
gi|157072295|gb|EAA27155.2| hypothetical protein NCU00081 [Neurospora crassa OR74A]
Length = 638
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 173/487 (35%), Positives = 259/487 (53%), Gaps = 12/487 (2%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLA 101
GP +G + MT+V GH+ LDF ++ W+ P LF P + + +
Sbjct: 17 GPPWGRSTV-TMTAVRGHLTQLDFHQEFKKWEYPPPDRLFDAPVQTVYPHDMKNIAQNIE 75
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRH-QININSPKTVWRARFSAITDKDIKAAM 160
N+A+ + L +W DCD+EGE+I E+ EA R + NI V+RARFS I I +A
Sbjct: 76 NQARQADILYIWTDCDREGEHIGSEIREAARKGKRNIQ----VYRARFSNIERAHILSAA 131
Query: 161 WNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGF 220
V + +A +V AR ELDLRIG AFTR+ T + G + ++SYG CQ PTLGF
Sbjct: 132 RRPVALDDKQAEAVAARIELDLRIGSAFTRFLTLSLRPLGGAMADLVLSYGSCQFPTLGF 191
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTV 280
V+R+ ++R F PEP+W + + GV V+ WSR +FD+ + + ++ K V
Sbjct: 192 VVDRYFRVRNFVPEPFWSIKVMHEKEGVKVNFNWSRNRLFDRLSVLLLYERCLAAKIAKV 251
Query: 281 VDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP 340
+V+ K KP L TVEL ++A+ L M AM +AE+LY +G++SYPRTET ++
Sbjct: 252 TEVKEKQTKKWKPLPLTTVELQKMATRFLRMTGQEAMTVAEKLYNKGFISYPRTETDRFD 311
Query: 341 ENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGD 399
+ +L A++++Q WG + ++ +PR+G+ D HPPI P A T LD
Sbjct: 312 KGMNLRALVQKQTQDQRWGPFAQNLVDGAFQQPRQGRNDDKAHPPIHPIIYAAPTVLDDQ 371
Query: 400 AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM---TWSAM 456
RLY+++VR F+ D + + +E F + + V W+
Sbjct: 372 EKRLYEFVVRRFLACCSEDARGAATDVEITYGEEKFVAHGLIVHQRNYLDVYPYENWTG- 430
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
+P F G+ M E KTT P YLTE++LI+LM+ +GIGTDA++ HI I
Sbjct: 431 -TAGLPKFTVGETFEPTEAMMTEGKTTAPSYLTEADLIALMDANGIGTDATMAQHIEKIK 489
Query: 517 QRNYVTV 523
+R YV V
Sbjct: 490 ERQYVQV 496
>gi|323456520|gb|EGB12387.1| hypothetical protein AURANDRAFT_20044, partial [Aureococcus
anophagefferens]
Length = 627
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 190/543 (34%), Positives = 277/543 (51%), Gaps = 32/543 (5%)
Query: 32 NGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE-- 89
+GAC V V TSV GH+M +F +N W P +L + E
Sbjct: 53 HGACRVRHVV------------TSVTGHLMSTEFEEPHNKWHACAPRDLLCEDLSRVEWT 100
Query: 90 -ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF 148
A K L L +EA+ ++LVLWLDCD+EGE I FEV++ R I +WRA+F
Sbjct: 101 VAEEKAPLKRQLEDEARAADWLVLWLDCDREGEAIAFEVVDVCR---RIKPNVDLWRAKF 157
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKY-GDLDASL 207
S++ +K+I A +L +P+ +A +V AR ELDLR G AFTR+QT QGKY G + +
Sbjct: 158 SSVDEKEILKAWRSLGRPDKRKADAVAARCELDLRSGAAFTRFQTFRVQGKYAGVAEEGV 217
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWS--RGHIFDKSTC 265
+SYGPCQ PTLGF V R +I +W +D+ + A V W R +FD
Sbjct: 218 VSYGPCQFPTLGFIVARQQEIDAHDARDFWRVDMETGGSAGAPRVRWDWRRKRVFDVGAA 277
Query: 266 NVFFKAVEKEKHVTVVD-VQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY 324
+VFF K V++ V++ +K +P L+T+EL + AS L +G M++AE LY
Sbjct: 278 HVFFDGCVAGKDQGVLEKVEAKPAAKPRPLPLSTLELQKRASRWLKLGSAETMEVAEALY 337
Query: 325 TQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLS------NGISKPRKG-K 377
+GYVSYPRTET + + D+ ++ +Q +G ++L PR+G K
Sbjct: 338 QRGYVSYPRTETELFRDTCDVRELVDRQRPDGRFGTFAAQLLDLPPDDRRAFLWPRQGAK 397
Query: 378 DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTM 437
D HPPI PTK +L G ++++ I RHF+ D Q A + E F
Sbjct: 398 DDEAHPPIHPTKAVAANELQGKEAKVFELIARHFLACCARDARGRQTNATAQLGGERFDA 457
Query: 438 EAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQS-VKMVERKTTPPDYLTESELISL 496
+ + V + + ++P F GD +P S + + +T PP LTE++L+S
Sbjct: 458 RGLMVDERNYLDVYPYESWSTATLPPFFAGDALPRPSALNLARSRTQPPRGLTEADLLSK 517
Query: 497 MEKHGIGTDASIPVHINNICQRNYVTVTSGRRLV--PTSLGIVLVHGYQKIDRELVEPTM 554
M+ HGIGTDA++ HI + R+Y + V PT LG LV Y + L P +
Sbjct: 518 MDAHGIGTDATMADHIKTVLTRDYALRDNAPPHVFRPTPLGSALVEAYDAMGMRLNLPQL 577
Query: 555 RSA 557
R+A
Sbjct: 578 RAA 580
>gi|164657941|ref|XP_001730096.1| hypothetical protein MGL_2478 [Malassezia globosa CBS 7966]
gi|159103991|gb|EDP42882.1| hypothetical protein MGL_2478 [Malassezia globosa CBS 7966]
Length = 694
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 176/486 (36%), Positives = 257/486 (52%), Gaps = 30/486 (6%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L EA+ + L++W DCD+EGE I FE+ + H V RARFSA+ I A
Sbjct: 11 LTIEARSTDMLIIWTDCDREGEAIGFEIAQ---HCQKAQRRLIVKRARFSAVIADQIHHA 67
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
NLV ++ +VDARQE+DLR G AFTR QT G LD+ L+SYGPCQ PTLG
Sbjct: 68 CMNLVDLDLHAVDAVDARQEVDLRAGAAFTRLQTMRL-GPLLKLDSMLLSYGPCQFPTLG 126
Query: 220 FCVERHDKIRTFKPEPYWLLDL--TLNLNG----VAVSVTWSRGHIFDKSTCNVFFKAVE 273
F V+ + ++ TF PE +W +DL ++ G V W R H+FDK ++ K +
Sbjct: 127 FVVDHYKRVETFVPEEFWSIDLRHAVSQQGQDRRTNVEFLWDRNHLFDKRIVHILHKRCK 186
Query: 274 KEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333
+ V V T K KP L TVEL + S GM P + +AE LY +G +SYPR
Sbjct: 187 DAEEAEVKQVVRRTTWKRKPTPLTTVELQKNLSRLSGMAPKRILDVAESLYQRGLLSYPR 246
Query: 334 TETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGI------------SKPRKG-KDVG 380
TET QY ++FD V++L +Q S WG H E+ ++ +PR G K+
Sbjct: 247 TETNQYDKDFDFVSLLDKQRSDCIWGAHATEIFASATGNGSDSLHSLQYERPRDGQKNDK 306
Query: 381 DHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
HPPI PT A L D ++YDY+ R F+ + D + + + E F
Sbjct: 307 AHPPIHPTAHA--NDLKADEKQVYDYVTRRFLASCTTDAMGEETKIFIEMGGESFHTSGL 364
Query: 441 YLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKH 500
+ GF + + ++ +P+++ S+ + T+PP+ LTE++L+ LM+KH
Sbjct: 365 LVKTLGFLTIFPYEKWTSKFVPEYQERQRFRPSSISVKSGSTSPPNLLTEADLVHLMDKH 424
Query: 501 GIGTDASIPVHINNICQRNYVTVTSG---RRLVPTSLGIVLVHGYQKIDR--ELVEPTMR 555
GIGTDA+I HI + R YV +T + LVP++LG+ LV GY++++ +L +P +R
Sbjct: 425 GIGTDATIAEHIKKVIDRQYVVITKQGKTKYLVPSTLGMGLVEGYERLETSLQLCKPKLR 484
Query: 556 SAYRVQ 561
Q
Sbjct: 485 HDTETQ 490
>gi|448112756|ref|XP_004202179.1| Piso0_001663 [Millerozyma farinosa CBS 7064]
gi|359465168|emb|CCE88873.1| Piso0_001663 [Millerozyma farinosa CBS 7064]
Length = 620
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 170/514 (33%), Positives = 275/514 (53%), Gaps = 14/514 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GHI +DF ++++ W K +P LF PT + ++ ++ EA+ C L++
Sbjct: 54 MTSVMGHITNIDFPTQFS-WGKCNPGRLFDAPT--IDNVSNKEVFENISTEARRCNRLMI 110
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I E+ A + +WR++FS + I A N ++ ++
Sbjct: 111 WTDCDREGEFIGHEIFSAAVKGNPSLRVEDIWRSQFSHLERSHILQAARNPIRLDMNSVH 170
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGK--YGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
+V R E+DLR+G +FTR+ T ++ + ISYG CQ PTLGF V+R+++++
Sbjct: 171 AVRCRMEIDLRVGASFTRFLTDLYRRTQVFPLEKGGFISYGTCQFPTLGFVVDRYNRVKR 230
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
F PE +W + +T+ + + W++ H+FD+ + ++ K ++ VV + SK
Sbjct: 231 FIPEKFWYISITVKKDNKTETFHWTKNHVFDRLYLALIYQNCLKYENAEVVQLIERPTSK 290
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
+P L TVEL + S M A+ AE+LY +G++SYPRTET ++P DL AV++
Sbjct: 291 YRPLPLTTVELQKNCSMYFKMSAKRALDAAEKLYNKGFLSYPRTETDKFPPTMDLKAVIQ 350
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLD-GDAWRLYDYIV 408
+Q + WG + E+L+ PR G D HPPI P LD D ++Y+ +V
Sbjct: 351 KQTQNSTWGQYASELLNGRFRSPRAGSHDDKAHPPIHPVNFVKLEMLDNADEKKVYELVV 410
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES-IPDFKPG 467
R F+ D + E FT A +L F V + A K+ + +P G
Sbjct: 411 RRFLACCSEDAKGKETKITLRWGTEEFTNSAIVVLERNFLDVYPYMAWKSTTPLPPLLRG 470
Query: 468 DLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGR 527
+ I + + M E KT+PP ++TESELI+LM+ +GIGTDA+I HI+ I R YV
Sbjct: 471 ETIKVATSVMKEGKTSPPQHMTESELIALMDANGIGTDATIAEHIDKIISRGYVVKVRKN 530
Query: 528 R---LVPTSLGIVLVHGYQKIDRE---LVEPTMR 555
+ ++P+ LG+ L+ G+ ++ + L +P +R
Sbjct: 531 KNDFIIPSELGMGLIEGFNDLEFDNLSLSKPFLR 564
>gi|219122509|ref|XP_002181586.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406862|gb|EEC46800.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1009
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 188/532 (35%), Positives = 275/532 (51%), Gaps = 35/532 (6%)
Query: 54 TSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLW 113
TSV GH+ DF Y W K DP+ LF P E L L + ++ + L+LW
Sbjct: 115 TSVRGHLASQDFPPAYG-WSKCDPIALFEAPIETSYRDDMQPLERMLKSLSRQAQVLILW 173
Query: 114 LDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARS 173
LDCD+EGE I EV + NS V+RARFS + +I+ A+ L + N + +
Sbjct: 174 LDCDREGEAIGDEVRTVC---LGSNSRLQVYRARFSTVLPVEIERALQTLGRVNEYMVAA 230
Query: 174 VDARQELDLRIGCAFTRYQTKFFQGKY-GDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
V AR LDLR+G AFTR+QT Q K+ G + +ISYGPCQ PTLGF VER +I TF
Sbjct: 231 VQARSTLDLRVGAAFTRFQTLRLQRKFDGFAEQGVISYGPCQFPTLGFVVERWARIETFI 290
Query: 233 PEPYWLLDLTLNLNGV---------------------AVSVTWSRGHIFDKSTCNVFFKA 271
PE +W L+L ++++ + +W RG+++DK V F+
Sbjct: 291 PEDFWHLELAISVDDTYHQQSQEEDQSAARGRTQQNRTIHFSWKRGYLYDKLLTTVLFEE 350
Query: 272 VEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSY 331
+ V + T++K +P L TVEL + AS L +G M AE LY QGY+SY
Sbjct: 351 CLEAGEAVVTAMNGRTRNKWRPVPLATVELQKRASMYLRIGSETLMSAAEELYQQGYISY 410
Query: 332 PRTETTQYPENFDLVAVLRQQES-SPDWGDHVREVLS-NGISKPRKGK-DVGDHPPITPT 388
PRTET ++ F+ +++Q S ++G + ++L+ NG PR GK D HPPITP
Sbjct: 411 PRTETERFRPEFEHRPLIQQFSSLQGEFGAYASKLLNENGFQIPRAGKSDDQAHPPITPA 470
Query: 389 K-LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
K + T D ++Y IV+H++ D V + E F ++ +
Sbjct: 471 KAVDPNTIQDQIQRKIYSLIVKHYLACCSRDAVGRGTTLTVRMGTEEFNATGLMVIEKNW 530
Query: 448 TGVMT----WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIG 503
+ + W + + E +P + G I S M E ++ PP ++E ELISLM+++GIG
Sbjct: 531 LEIYSPWERWGSGQGE-LPPLQVGSRIRPTSFLMKEGRSGPPQPISEVELISLMDRNGIG 589
Query: 504 TDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMR 555
TDA+I HI+ I R Y ++ +PT LGI LV GY + +L +P +R
Sbjct: 590 TDATIAQHISTILDREYARKDGRQKFLPTPLGIALVEGYNSMGYQLNKPDLR 641
>gi|429861174|gb|ELA35874.1| DNA topoisomerase [Colletotrichum gloeosporioides Nara gc5]
Length = 673
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 169/475 (35%), Positives = 250/475 (52%), Gaps = 7/475 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MT+V GH+ LDFT +W P LF+ P K + + +A+ C+ LV+
Sbjct: 55 MTAVLGHLTALDFTPANKSWQHPPPESLFTAPVVTLVPDDKKTVADNIERQARYCQLLVI 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPK-TVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I E++ A R P V RA FS I I +A L + +
Sbjct: 115 WTDCDREGEHIGKEIVHAARK----GKPDIQVKRATFSNIERAHILSAARRLTDLDQKQV 170
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+VD R ELDLRIG AFTR+ T + G L ISYG CQ PTLGF V+R+ +++ F
Sbjct: 171 DAVDTRIELDLRIGYAFTRFLTLSLRPLGGALQEKTISYGSCQFPTLGFVVDRYFRVQNF 230
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
PE +W + + N G + +WSR +FD+ + + ++ + K V VQ K
Sbjct: 231 VPEQFWSIKVMHNREGKKANFSWSRNRLFDRMSVVILYERCIRAKKAKVTKVQEKATRKW 290
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
KP L TVEL + A+ L M AM IAE LY +G++SYPRTET ++ + DL A++R+
Sbjct: 291 KPLPLTTVELQKAATRLLRMSGQQAMTIAENLYNRGFISYPRTETDRFDKGMDLKALVRK 350
Query: 352 QESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRH 410
Q WG++ +L+ S+PR+G+ D HPPI P A + L + +LY+Y+VR
Sbjct: 351 QTPHQRWGEYAEGLLNGNFSQPREGRHDDKAHPPIHPVTYAAPSVLKPEEAQLYEYVVRR 410
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES-IPDFKPGDL 469
F+ D + +E F +L + V + + + +P + G+
Sbjct: 411 FLACCSEDAKGMATDIEILYGEETFHARGLRVLERNYLDVFIYEKWNDSAELPHYTQGET 470
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
M + KT+PP YLTE++LI+LM+ +GIGTDA++ HI I R YV +
Sbjct: 471 FVPTEAMMTDGKTSPPGYLTEADLIALMDANGIGTDATMAEHIQKIQDREYVQLA 525
>gi|189188224|ref|XP_001930451.1| DNA topoisomerase 3-beta [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972057|gb|EDU39556.1| DNA topoisomerase 3-beta [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 665
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 182/563 (32%), Positives = 270/563 (47%), Gaps = 57/563 (10%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
T V GHI+ DF ++ W P LF P A K + + + +A+ L +
Sbjct: 55 FTCVAGHIVHRDFNDQFKKWHSCPPSALFDAPIVSSIAQDKKVVASNIEAQARYASILYI 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I E+ + + N VWRARFS I + A N ++ + +A
Sbjct: 115 WTDCDREGEHIGSEIRDIA---LKANPNMQVWRARFSNIERAHVIQASQNPIRLDEAQAE 171
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQG---KYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
+V AR ELDLR+G AFTR QT Q + G+ +ISYG CQ PTLGF V+R+ ++R
Sbjct: 172 AVSARMELDLRLGAAFTRMQTFALQNVIPQQGEERGKVISYGSCQFPTLGFVVDRYLRVR 231
Query: 230 TFKPEPYWLL------DLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV 283
F PEP+W + +L + V V +W RGH+FD+ + F+ K VV +
Sbjct: 232 NFVPEPFWYIKVGHTKELEQTKDKVDVRFSWRRGHLFDRMAVTIIFEKCLLAKTAKVVKM 291
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
SK KP L TVEL ++ S L M M++AE LYT+G++SYPRTET Q+
Sbjct: 292 SKKPTSKWKPLPLTTVELQKMGSRFLRMTSQDVMKVAEELYTKGWISYPRTETDQFDRAM 351
Query: 344 DLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWR 402
DL ++ +Q WG + +++ G +PR+G++ HPPI P TQL+
Sbjct: 352 DLRTLVGRQTQDGRWGPFAQNLMNGGFHQPRQGRNNDKAHPPIHPVNYVAPTQLNDRERT 411
Query: 403 LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI- 461
+Y+++VR F+ D V + E F ++ + V + ++ +
Sbjct: 412 VYEFVVRRFLACCSEDAVGEATDIEIDYGGEFFHAHGLTVIARNYLDVYPYDKWESSQVL 471
Query: 462 PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
P + G+ M + +T P YLTE ELISLM+ +GIGTDA++ HI I +R YV
Sbjct: 472 PKYAVGETFEPTEANMQDGQTCAPSYLTEPELISLMDANGIGTDATMAEHIATIQKREYV 531
Query: 522 TV----------------------------------------TSG-RRLVPTSLGIVLVH 540
TSG + +PT+LG+ L+
Sbjct: 532 IARAKGGGAAVAGTDRGRGRGRGGRGGRGGRGGAAVGQDGGGTSGVQEFIPTTLGVALIE 591
Query: 541 GYQKIDRE--LVEPTMRSAYRVQ 561
GY + E L +P +R VQ
Sbjct: 592 GYDNVGFETSLSKPFLRKEMEVQ 614
>gi|302916113|ref|XP_003051867.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732806|gb|EEU46154.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 653
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 168/472 (35%), Positives = 250/472 (52%), Gaps = 10/472 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MT V GH+ +DF+ +Y NW P LF+ P + K + + ++AK LV+
Sbjct: 55 MTCVTGHLTNVDFSPEYKNWSHPPPEALFNAPIV---TSDKKSIAQNIESQAKFARLLVI 111
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I E++EA R P V RARFS + + +A +L + + +
Sbjct: 112 WTDCDREGEHIGHEIVEAARK----GKPDIEVKRARFSNVERAHVLSAARSLAELDEKQV 167
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V R ELDLRIG AFTR+ T + G ++ +SYG CQ PTLGF V+R+ +++ F
Sbjct: 168 NAVATRIELDLRIGYAFTRFITNNLRPLGGPMEKLTLSYGSCQFPTLGFVVDRYFRVKNF 227
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
PEP+W + + N G V +W R +FD+ + + ++ K TV VQ K
Sbjct: 228 VPEPFWSIKVMHNREGKKVEFSWLRNRLFDRMSTVILYERCLAAKTATVTKVQEKPTRKF 287
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
KP L TVEL + A+ L M AM IAE LY +G++SYPRTET ++ +L A++++
Sbjct: 288 KPLPLTTVELQKAATRLLRMSGQQAMTIAEGLYNKGFISYPRTETDRFDRGMNLRALVQK 347
Query: 352 QESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRH 410
Q WG + + + +PR+G+ D HPPI P A + L D RLY+Y+VR
Sbjct: 348 QTPDERWGTFAQGLANGAFQQPREGRHDDKAHPPIHPITYAAPSVLSFDEGRLYEYVVRR 407
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES-IPDFKPGDL 469
F+ D + +E F +L + V + N + +P F G+
Sbjct: 408 FLACCSDDAKGMATDIELEYGEERFNAHGVIVLERNYLEVFIYEKWNNSAELPKFTEGER 467
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
+ E KTT P+YLTE++LI+LM+ +GIGTDA++ HI I R YV
Sbjct: 468 FQPTEAMVTEGKTTAPNYLTEADLIALMDANGIGTDATMAEHIQKIQDREYV 519
>gi|302687094|ref|XP_003033227.1| hypothetical protein SCHCODRAFT_54192 [Schizophyllum commune H4-8]
gi|300106921|gb|EFI98324.1| hypothetical protein SCHCODRAFT_54192 [Schizophyllum commune H4-8]
Length = 611
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 190/510 (37%), Positives = 264/510 (51%), Gaps = 24/510 (4%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+T V GH+ DF + W P+ LF K + L EA+ + +++
Sbjct: 51 VTCVAGHLTQQDFYDTHRKWHSCAPIALFEADVNTFIPPDKKAIEKNLLAEARSADIVMI 110
Query: 113 WLDCDKEGENICFEVMEAV-RHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE I +EV+ R + NI V RA FSAI +DI A N P +
Sbjct: 111 WTDCDREGEYIGWEVVSVCKRAKRNIR----VERAHFSAIIARDIHNAAQN---PQELDQ 163
Query: 172 RSVDA---RQELDLRIGCAFTRYQTKFFQGKY---GDLDASLISYGPCQTPTLGFCVERH 225
R VDA R LDL+IG AFTR QT Q GD + +ISYG CQ PTLGF V R
Sbjct: 164 RQVDAVAARTVLDLKIGAAFTRMQTMGLQAHIPVIGD-KSHVISYGSCQFPTLGFVVNRF 222
Query: 226 DKIRTFKPEPYWLLDLTLNLNGV--AVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV 283
++++F PE + + LT+ G TW RG IFD+ ++ V ++ TV V
Sbjct: 223 KQVKSFVPEDFSYIHLTIKAPGSNDETPFTWQRGRIFDRDVAVALYQLVMRDTLTTVTKV 282
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
T K KP L TVEL + S L + P + IAE+LY QG+VSYPRTET Q+P N
Sbjct: 283 VKKTTKKWKPLPLTTVELQKAGSRLLRLAPKRVLDIAEKLYQQGFVSYPRTETDQFPNNM 342
Query: 344 DLVAVLRQQESSPDWGDHVREVL-SNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAW 401
D +++ +Q++ WG ++ G +PRKGK + HPPI PT A QL GD
Sbjct: 343 DFKSLIEKQKADATWGAFATKLNDQGGFERPRKGKHNDNAHPPIHPT--AHAAQLAGDEK 400
Query: 402 RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI 461
R+Y++I R F+ D Q V E F +L + V + ++
Sbjct: 401 RVYEFIARRFLACCSKDAEGFQTVIDVLCGGEAFHTTGLIVLERNYLEVYVYDKWNGHAV 460
Query: 462 PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
P+F+ GD V+++ TT P+YLTE++L++LM+K+GIGTDA+I HI + R YV
Sbjct: 461 PEFQQGDEFQPARVELLTGTTTGPNYLTEADLVTLMDKNGIGTDATIAQHIETVINREYV 520
Query: 522 T---VTSGRRLVPTSLGIVLVHGYQKIDRE 548
+ L P++LGI LV GY +I E
Sbjct: 521 IEEMAGQTKYLKPSTLGIGLVEGYDQIGLE 550
>gi|242220541|ref|XP_002476035.1| predicted protein [Postia placenta Mad-698-R]
gi|220724723|gb|EED78746.1| predicted protein [Postia placenta Mad-698-R]
Length = 707
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 191/521 (36%), Positives = 274/521 (52%), Gaps = 41/521 (7%)
Query: 50 LFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEF 109
LF +T+V GH+M +F Y+ W DP L S E + + ++A+ +
Sbjct: 48 LFTVTAVTGHVMDHEFHYMYSKWTSCDPFALLS-----EEGSHSNRPKPQKRSQAR--QT 100
Query: 110 LVLWLDCDKEGENICFEVM----EAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
L++W DCD+EGENI E+ EA R NI ++ RARFSAI + I A + V+
Sbjct: 101 LMIWTDCDREGENIGAEIAGICTEAHR---NI----SIRRARFSAIIPQQIHNAAQHPVQ 153
Query: 166 PNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERH 225
+ +A +V+AR LDLRIG AFTR QT Q ++ L +ISYGPCQ PTLGF V R+
Sbjct: 154 LDTAQANAVEARILLDLRIGSAFTRLQTLNLQQRFEVL-KDVISYGPCQFPTLGFVVSRY 212
Query: 226 DKIRTFKPEPYWLLDLTL------NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
+++++F PE +W + L+L + + TW RGH+FD V +++V
Sbjct: 213 NQVKSFVPETFWYIYLSLSRPSSTDRDEDETIFTWRRGHLFDLHFAMVLYESVLAVPRAR 272
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQY 339
+V V S K KP L TV+L +V S L + P + IAE LY QG++SYPRTET ++
Sbjct: 273 IVKVTSKDTKKWKPYPLTTVDLQKVGSRLLRISPKKILDIAEHLYQQGFLSYPRTETDRF 332
Query: 340 PENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGD 399
FD + +L++Q P WG + + KD HPPI PT A L GD
Sbjct: 333 DPQFDFMTLLQKQTVDPAWGP---------FAHMQGKKDDKAHPPIHPTAYA--GNLAGD 381
Query: 400 AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
R+Y+YI R F+ D + Q E F + + V + ++
Sbjct: 382 EKRVYEYITRRFLACCSKDALGWQTTVDVEYGGEEFYATGLTVRERNYLEVFPYDKWSDK 441
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
+P F G+ ++ E +TT P LTES+L+S+M+K+GIGTDA+I HI I RN
Sbjct: 442 ELPHFTQGEQFVPTVCELREGQTTRPALLTESDLVSMMDKNGIGTDATIAQHIQTIIDRN 501
Query: 520 YVT---VTSGRRLVPTSLGIVLVHGYQKI--DRELVEPTMR 555
YV S + LVP++LGI LV GY + +R L P +R
Sbjct: 502 YVIERMQGSTKYLVPSTLGIGLVEGYDAMGFERSLSRPQLR 542
>gi|255716548|ref|XP_002554555.1| KLTH0F08118p [Lachancea thermotolerans]
gi|238935938|emb|CAR24118.1| KLTH0F08118p [Lachancea thermotolerans CBS 6340]
Length = 627
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 185/527 (35%), Positives = 278/527 (52%), Gaps = 31/527 (5%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ GLD + W K ++F P + K+ + E ++ ++L++
Sbjct: 55 MTSVAGHLTGLDLDQAHG-WGKCPIPQVFDAPIVDTRTKDQQKIADNIKKECRNADYLMI 113
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I +E+++ Q N + V+RA FS + I A N P + R
Sbjct: 114 WTDCDREGEYIGWEIVQTA-IQANQSLQANVYRAVFSHLESGHIMHAARN---PKRLDQR 169
Query: 173 SVDA---RQELDLRIGCAFTRYQTKFFQGKYGDLDAS------LISYGPCQTPTLGFCVE 223
+VDA R E+DLR G AFTR+ T+ G S +ISYG CQ PTLGF V+
Sbjct: 170 AVDAVRTRMEVDLRSGVAFTRFLTELLGSTVGRDSGSKNDQRPIISYGTCQFPTLGFVVD 229
Query: 224 RHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFK-AVEKEKHVT-VV 281
R ++IR F PE +W + +++ + W RGH+FD+ V ++ +E ++ V
Sbjct: 230 RFERIRKFVPEKFWFIQISIPNDSEKTVFQWERGHLFDRLAVAVIYELCLEASGNIAKVA 289
Query: 282 DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPE 341
D++S +K +P L TVEL + S L M ++ AE+LY +GY+SYPRTET +P
Sbjct: 290 DLKSKPTTKWRPLPLTTVELQKNCSRFLKMSAKTSLDAAEKLYQKGYISYPRTETDIFPP 349
Query: 342 NFDLVAVLRQQESSPDWGDHVREVLS----NGISKPRKGK-DVGDHPPITPTKLATRTQL 396
N DL A+++QQ + WG++ + +L+ N PR GK D HPPI P
Sbjct: 350 NMDLQALVQQQTNDRRWGEYAQNLLNGNGPNCFKWPRAGKNDDKAHPPIHPIVSCGEGLD 409
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM 456
+ + ++Y+Y+ RHF+ D E FT +L F V W M
Sbjct: 410 NENEKKVYEYVTRHFLACCSEDSKGHSTTMVLHWGPEAFTANGIVVLERNFLDVYLW--M 467
Query: 457 KNES---IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
K E+ +P+ G + + + M + +T+PP+ +TESELI LM+ +GIGTDA+I HI
Sbjct: 468 KWETTKQLPNLNVGQEVELLTYLMKDGQTSPPNQMTESELILLMDANGIGTDATIAEHIE 527
Query: 514 NICQRNYV---TVTSGRRLVPTSLGIVLVHGYQKIDRE--LVEPTMR 555
I QR+Y+ V L+PT+LGI LVHG++ I E +P +R
Sbjct: 528 KIQQRDYIKKKKVNKQTYLIPTTLGISLVHGFEAIGLEDSFAKPFLR 574
>gi|223999503|ref|XP_002289424.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
gi|220974632|gb|EED92961.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
Length = 672
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 180/517 (34%), Positives = 275/517 (53%), Gaps = 17/517 (3%)
Query: 54 TSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLW 113
TSV GH+ +F + W + P+ LF P + + L L ++ L+LW
Sbjct: 73 TSVRGHLASQNFGPSFG-WTRCAPVALFDAPIDTSYSEDMEPLERMLRQLSQRASALILW 131
Query: 114 LDCDKEGENICFEVMEA-VRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
LDCD+EGE I EV ++ + + ++RA+FS + +I+ A+ L + N
Sbjct: 132 LDCDREGEAISDEVRAVCLKGNPRLGTMNRIYRAKFSTVLPGEIERALRTLGRVNENFVA 191
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKY-GDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V AR E DLR+G AFTR+QT Q K+ G + +ISYGPCQ PTLGF VER +I TF
Sbjct: 192 AVQARSEHDLRVGAAFTRFQTLRLQKKFDGFGERGVISYGPCQFPTLGFVVERWARIETF 251
Query: 232 KPEPYWLLDLTLNLN-----GVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSS 286
PE +W +++T+ LN ++ + W R ++D+ + A + +V +
Sbjct: 252 VPEDFWFIEMTIRLNEDGSVSRSIRLNWKRVRLYDRVMTIALYDACLEAGAAVIVSLTGR 311
Query: 287 TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLV 346
K+K +P L TVEL + AS L +G MQ AE LY QG++SYPRTET ++ FD
Sbjct: 312 PKNKWRPIPLATVELQKRASKYLRIGSEELMQKAEELYQQGFISYPRTETEKFRPEFDHH 371
Query: 347 AVLRQ-QESSPDWGDHVREVLSN-GISKPRKGK-DVGDHPPITPTK-LATRTQLDGDAWR 402
A+++ Q ++G++ +LSN PR G+ D HPPITP K + +T D +
Sbjct: 372 ALIQSFQAVQGEFGNYATSLLSNSNFQNPRAGQNDDNAHPPITPAKAVDPQTIADPIQRK 431
Query: 403 LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT----WSAMKN 458
+Y +V+H++ D V + +A E F + +L + + WS +
Sbjct: 432 VYTLVVKHYLACCSRDAVGRETELTLKIASEEFVAKGLMILERNWLEIYQPFERWSTGQG 491
Query: 459 ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQR 518
E +P + G I ++ M E +T+ P ++E ELISLM+++GIGTDA+I HI IC+R
Sbjct: 492 E-LPKVRVGSRIVPTTLVMNEGQTSAPTPISEVELISLMDRNGIGTDATIAQHITTICER 550
Query: 519 NYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMR 555
Y +R PT LGI LV GY + +L +P +R
Sbjct: 551 EYAKKDQNQRFHPTKLGIALVEGYNSMGYQLNKPDLR 587
>gi|213410242|ref|XP_002175891.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
gi|212003938|gb|EEB09598.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
Length = 621
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 180/523 (34%), Positives = 258/523 (49%), Gaps = 17/523 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MT+V GH+ F +Y++W V LF + L + EA + ++L +
Sbjct: 55 MTAVSGHLTEASFPPEYSSWSSVPQEVLFDAQIRISVSKNSAPLADNIRREASNADYLYI 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I E+ R NS V RA F+ + I A N N + A
Sbjct: 115 WTDCDREGEYIGTEISNVARSG---NSRIRVLRADFNNLERTHIIRAARNPRNLNQWAAD 171
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V AR ELD R+G FTR QT Q + L +ISYGPCQ PTLGF V+R ++ F
Sbjct: 172 AVAARIELDFRLGAIFTRIQTLQLQKAFEILKKRVISYGPCQFPTLGFVVDRWQRVEDFL 231
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE +W + L V+ W R +FD V+ + + K V +V K+K K
Sbjct: 232 PEQFWSIKLQDRRQAKTVTFNWKRNRVFDHLAALVYLERCLEAKVAKVTNVVQKPKTKYK 291
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TVEL ++ L + ++IAE LYT G+VSYPRTET Q+ DL ++ +Q
Sbjct: 292 PLPLTTVELTKLGPKFLRISAKKTLEIAEHLYTNGFVSYPRTETDQFDPGMDLQTLISKQ 351
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQL-DGDAWRLYDYIVRH 410
S P WG ++LS PR G + HPPI P T+ L D W++Y +I R
Sbjct: 352 TSDPSWGTFASDLLSGNFRNPRSGSHNDKAHPPIHPIAHVTQNALPSQDHWKVYQFITRR 411
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES-IPDFKPGDL 469
F+ + + + ++ DE F+ +L + V + + + +P ++ D
Sbjct: 412 FLACCSDHARGAETIVEVTMGDEQFSQSGLTVLEHNYLDVYIYEKWNSSAQLPVYEMNDE 471
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGR-- 527
+ V ++E TT P YLTE ELISLM+ +GIGTDA++ HI + +R YV +
Sbjct: 472 FVPRQVNIIEGATTSPTYLTEPELISLMDANGIGTDATMAEHIEKVQEREYVLKRKRKGK 531
Query: 528 -------RLVPTSLGIVLVHGYQKIDRE--LVEPTMRSAYRVQ 561
VPTSLG+ LV GY +I E L +P +R VQ
Sbjct: 532 GSGAGVSEFVPTSLGVALVKGYDEIGLEWSLTKPFLRREMEVQ 574
>gi|448521188|ref|XP_003868447.1| Top3 protein [Candida orthopsilosis Co 90-125]
gi|380352787|emb|CCG25543.1| Top3 protein [Candida orthopsilosis]
Length = 617
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 176/516 (34%), Positives = 271/516 (52%), Gaps = 16/516 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAF--LANEAKDCEFL 110
MTSV GHI LDF +Y W K LF+ T K F +A EA++ + L
Sbjct: 54 MTSVVGHITNLDFPPQYQ-WGKCAAERLFTAEI----ITKITKQDVFDNIAIEARNSDKL 108
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
++W DCD+EGE I E+ +A + + S VWR++FS + I A + ++ ++
Sbjct: 109 MIWTDCDREGEFIGKEIFDAAKKGNSRISLSDVWRSKFSHLERNHILRAAKSPIELDMKA 168
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
A +V R ELD R+G +FTR T + K + SYG CQ PTLGF V+R+ ++++
Sbjct: 169 ASAVSCRMELDFRVGTSFTRLLTDNLKSKNIIDKKDIASYGTCQFPTLGFVVDRYKRVKS 228
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
FKPEP+W ++ L + W +GHIFD+ + ++ K + + +++ S
Sbjct: 229 FKPEPFWYIEPMLRKESKRTTFNWVKGHIFDRLYVLLMYERCLKHEQGEITKLETKPTSN 288
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
+P L TVEL + + M ++ AE+LY +G++SYPRTET +YP D +
Sbjct: 289 YRPLPLTTVELQKDCAKYFKMSAKATLEAAEKLYNRGFISYPRTETDKYPPTMDFKGIFE 348
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQL-DGDAWRLYDYIV 408
+Q+ WG + +LSNG +PR G D HP I P + L + ++Y+Y+V
Sbjct: 349 KQKQDSRWGSYSGGLLSNGHEQPRNGSHDDHAHPAIHPVNYVSIDSLGSANEKKVYEYVV 408
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPG 467
R F+ D A DE FT + + + T+ + ++S+P F G
Sbjct: 409 RRFLACCSKDAKGMLTSATLKWGDEFFTASGLMVTERNYLDIFTYKKWESSKSLPSFHEG 468
Query: 468 DLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT-VTSG 526
+ + I S M E KT+PP +TE ELI+LM+ +GIGTDA+I HI+ I R YVT V G
Sbjct: 469 EKVKISSGLMKEGKTSPPQLMTEPELIALMDANGIGTDATIAEHIDKILSRKYVTKVKRG 528
Query: 527 R--RLVPTSLGIVLVHGYQKIDRE---LVEPTMRSA 557
+ + P+ LGI L+ G+ K++ L +P +R A
Sbjct: 529 KVEYIEPSPLGIGLIEGFDKMEFNGISLSKPFLRKA 564
>gi|406606993|emb|CCH41611.1| DNA topoisomerase III [Wickerhamomyces ciferrii]
Length = 623
Score = 301 bits (770), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 169/515 (32%), Positives = 282/515 (54%), Gaps = 16/515 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ G+DF Y W + P +LF P + + K+ + + + L++
Sbjct: 54 MTSVAGHLSGMDFPDAYK-WGRCSPGKLFEAPIVITMSDDQKKIAQNIERLGRTAQKLMI 112
Query: 113 WLDCDKEGENICFEVMEAVRH-QININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE I E+++ R NI T+ RA+FS + + A +K +
Sbjct: 113 WTDCDREGEYIGKEILDVARKGNPNITIDNTL-RAQFSHLERSHVLKAAREPIKLDQNAI 171
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLD-ASLISYGPCQTPTLGFCVERHDKIRT 230
+V+ R ELDLR G +FTR+ FQ KY + + ++SYG CQ PT+GF V+R +I+
Sbjct: 172 NAVETRMELDLRTGASFTRFLCDVFQ-KYKNANLVDVVSYGSCQFPTVGFVVDRFKRIKN 230
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
F PE +W LD+++ G TW + +FD+ V ++ + + T+ +++SS +K
Sbjct: 231 FVPEEFWYLDISVR-KGKITRFTWKKNRLFDRLAAVVLYQKCMENEKGTITNIKSSPSTK 289
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
KP L TVEL + S M ++++AE+LY +G++SYPRTET YP+ DL A++
Sbjct: 290 WKPLPLTTVELQKGCSMYFKMSAKESLEVAEKLYQKGFLSYPRTETNVYPKTMDLKALID 349
Query: 351 QQESSPDWGDHVREVLSNGI-SKPRKGKDVGD-HPPITPTKLATRTQLDGDAW--RLYDY 406
+Q WG++ +L + PR+GK + HPPI P D A ++Y++
Sbjct: 350 KQRPDQVWGEYATGLLDGDLFDTPRQGKKNDEAHPPIHPVNYLNIHSPDATATEKKVYEF 409
Query: 407 IVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES-IPDFK 465
+VRHF+ T + + E F+ +L + + + + K+ + +P+F
Sbjct: 410 VVRHFLATCSKNAKGASTNVDLTWGTEKFSASGLQVLELNYLDIYKYQSWKSSAELPEFT 469
Query: 466 PGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS 525
+ + I S ++ KT+PP ++TE+ELI+LM+ +GIGTDA+I HI +C R Y+ +
Sbjct: 470 MNEQVKINSAELKSGKTSPPQHITETELIALMDANGIGTDATIADHIEKVCNRQYIIKKT 529
Query: 526 GRR---LVPTSLGIVLVHGYQKID--RELVEPTMR 555
R+ LVP++LG+ LV G+++++ L +P +R
Sbjct: 530 ERQKKFLVPSTLGMALVDGFEELNLRNSLTKPFLR 564
>gi|255072381|ref|XP_002499865.1| predicted protein [Micromonas sp. RCC299]
gi|226515127|gb|ACO61123.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 639
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 191/537 (35%), Positives = 266/537 (49%), Gaps = 57/537 (10%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELF-SCPTEKREATPKLKLPAFLANEAKDCEFLV 111
TSV GH+MGLDF + W+ +P EL K+ K K+ L EA C +L+
Sbjct: 56 FTSVTGHVMGLDFPPSHRGWNTCNPRELIDGARVVKQVDKGKEKVAENLRKEASRCAWLI 115
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLVKPNIFE 170
LWLDCD+EGENI FEVM+ + + P RARFSA++ D+ A+ LV PN E
Sbjct: 116 LWLDCDREGENIAFEVMDICKQ----SKPGIRCLRARFSALSHNDVTRALARLVDPNPHE 171
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQ---------GKYGDLDASLISYGPCQTPTLGFC 221
+ +VD RQELDLR G AFTR+ T Q G D +++SYGPCQ PTLGF
Sbjct: 172 SAAVDMRQELDLRFGSAFTRFNTLLLQRSGVAARLPGADADGKGNIVSYGPCQFPTLGFI 231
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVT---WSRGHIFDKSTCNVFFKAVEKEKH 277
V+R I PE +W + L+ + G S+ WSR +FD+ F AV
Sbjct: 232 VQRKWDIDAHVPENFWKIKLSHAVGQGREASIAEFEWSRDRLFDEHLATALFAAVRGAGQ 291
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V + K P LNT+E+ + + + + P M++AE LY G++SYPRTET
Sbjct: 292 AVVTREGGTESKKWPPHPLNTLEMQKRLNRAIRVSPEQIMKLAEELYQAGFISYPRTETD 351
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISK--PRKGKDVGDHPPITPTKLATRTQ 395
++P +FD + Q P +G H LS G + P G D HPPI PTKLA+ TQ
Sbjct: 352 KFPHDFDYRTSIEQLHPHPKFGFHAIN-LSGGRFRQPPGGGHDDKAHPPIYPTKLAS-TQ 409
Query: 396 LDGDAWR--------LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTM------EAKY 441
D +WR +Y+++ RHF+ + V + + + E F E Y
Sbjct: 410 -DYASWRNRNSRLIDVYEFVCRHFLASCSLPAVAHKTTVEIDMGGERFKATGNMIKELNY 468
Query: 442 L------------LHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLT 489
L L P + G WS+ +IP + G + + +T PP L+
Sbjct: 469 LEVYGKGPAGGPVLQPSYDG---WSS---NTIPSYVVGQRFQPTELSLRPGRTQPPPLLS 522
Query: 490 ESELISLMEKHGIGTDASIPVHINNIC-QRNYVTVTSGRRLVPTSLGIVLVHGYQKI 545
E++L+S ME H IGTDA+ HI + +R Y RL+PT LG L GY ++
Sbjct: 523 ETDLLSKMEAHQIGTDATQAQHIEKVVGERGYARKVGDNRLMPTELGEALCEGYARM 579
>gi|302406450|ref|XP_003001061.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
gi|261360319|gb|EEY22747.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
Length = 658
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 170/493 (34%), Positives = 257/493 (52%), Gaps = 26/493 (5%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MT+V GH++G++FT NW P LF P A+ K + + +A+ C+ L++
Sbjct: 55 MTAVRGHLLGMEFTPANKNWQYPPPDSLFHAPIVTTVASDKKAVADNIEQQARYCDLLII 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGENI E++ + P V RA+FS I + A NLV + +A
Sbjct: 115 WTDCDREGENIGREIVGLAKK----GKPTIRVKRAKFSNIERTHVIQAAKNLVDLDERQA 170
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYG-------------------P 212
+VDAR ELDLRIG AFTR+ T + G L +ISYG
Sbjct: 171 DAVDARMELDLRIGYAFTRFLTTNLRTLGGPLVEMIISYGRSFRLSPPSRRRLLLMNPGS 230
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAV 272
CQ PTLGF V+R+ +++ F E +W + + G V WSR +FD+ + ++
Sbjct: 231 CQFPTLGFVVDRYFRVKNFVAEKFWSIHVNHTQEGKKVKFAWSRNRLFDRMAVTILYERC 290
Query: 273 EKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYP 332
+ + V VQ K KP L TVEL + A+ L M AM +AE LY +G++SYP
Sbjct: 291 IQARTAKVTKVQEKPTRKWKPLPLTTVELQKAATRLLRMSGQQAMSVAEDLYNKGFISYP 350
Query: 333 RTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLA 391
RTET ++ + +L ++++Q S WG + +++LS S+PR+G+ D HPPI P A
Sbjct: 351 RTETDRFDKEINLRNLVQKQTQSDAWGPYAQDLLSGSFSQPRQGRHDDKAHPPIHPVTFA 410
Query: 392 TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
+ + L DA RLY+YIVR F+ D +E F ++L + V
Sbjct: 411 SPSVLTHDAKRLYEYIVRRFLACCSDDAKGVSTNVDILYGEESFHAHGLHVLERNYLDVF 470
Query: 452 TWSAMKNES-IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPV 510
+ + + +P F+ G++ + + KT+PP YLTE++LI+LM+ +GIGTDA++
Sbjct: 471 VYEKWNDTTELPKFRVGEVFQPTEAMLTDGKTSPPSYLTEADLIALMDINGIGTDATMAE 530
Query: 511 HINNICQRNYVTV 523
HI I R Y +
Sbjct: 531 HIQKIQDREYAAL 543
>gi|384254048|gb|EIE27522.1| prokaryotic type I DNA topoisomerase [Coccomyxa subellipsoidea
C-169]
Length = 919
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 175/519 (33%), Positives = 272/519 (52%), Gaps = 17/519 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
TSV GH+M LDF + W PLEL+ P K K + L +A+ C++LVL
Sbjct: 57 FTSVAGHLMELDFPEAFKKWHSCSPLELYGAPVLKCVPQDKKLVERNLKEQARKCQWLVL 116
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGENI FEV++ I N + RA+FSA+ ++++ ++ NL P+ ++
Sbjct: 117 WLDCDREGENIAFEVIDVC---IKANPRLLIKRAKFSALVRRELERSVQNLGVPDENLSK 173
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYG------DLDASLISYGPCQTPTLGFCVERHD 226
+VDARQE+DLRIG +FTR+QT Q K+ + + SYGPCQ PTLG V+R
Sbjct: 174 AVDARQEIDLRIGASFTRFQTLLLQEKFNWEEHGIHDERPIFSYGPCQFPTLGLIVQRQW 233
Query: 227 KIRTFKPEPYW-LLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS 285
+I+ EP+W + + G + ++ W R ++D + ++ TV V +
Sbjct: 234 EIQAHVAEPFWYIYAMYRAPEGQSCTLHWQRDRLYDHVIATILYETCVDAPLATVTKVDA 293
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDL 345
K + P L T+ L + A + L + M++AE LY +G++SYPRTET + +DL
Sbjct: 294 RQKLRWPPLPLATLSLQKEAITHLRLPGERMMKLAEELYQEGFISYPRTETDVFDPAYDL 353
Query: 346 VAVLRQQESSPDWGDHVREVLSNGI-SKPR-KGKDVGDHPPITPTKLA---TRTQLDGDA 400
A++R+ + WG H + + S + + PR G D HPPI PT+ + D +
Sbjct: 354 KALVREHVNDARWGQHAQRIDSGEMWAAPRGGGHDDHAHPPIHPTRWSAPDANQGWDPNK 413
Query: 401 WRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM-KNE 459
RLY++IVR F+ + V + + ++A E F + + V W+ N+
Sbjct: 414 RRLYEFIVRSFLASCSKPAVGFETQVEVTIAAETFRTTGLMVKERNWMEVFPWARWGGND 473
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
++P F + + + T PP ++E +LIS ME+HGIGTDA++ HI R
Sbjct: 474 NLPVFAVNQTFMPTELLLKDGMTQPPPKMSERDLISAMERHGIGTDATVADHIQKQLDRG 533
Query: 520 YVTVTSGRRLVPTSLGIVLVHGYQKID-RELVEPTMRSA 557
Y + + PT+LG LV Y K+ L +PT+R A
Sbjct: 534 YALKDAAQLFSPTALGEALVASYHKMGLSNLWQPTLRGA 572
>gi|171686712|ref|XP_001908297.1| hypothetical protein [Podospora anserina S mat+]
gi|170943317|emb|CAP68970.1| unnamed protein product [Podospora anserina S mat+]
Length = 751
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 173/484 (35%), Positives = 256/484 (52%), Gaps = 9/484 (1%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAF-L 100
GP GD + MT+V GH+ +F Y +W P LF P TP K A +
Sbjct: 131 GPGLGDSNV-TMTAVRGHLTTAEFPPTYKSWSHPPPDSLFDAPITT-VTTPDCKAIARNI 188
Query: 101 ANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAM 160
A+ L++W DCD+EGE+I E+ +A + N V RARFS + I +A
Sbjct: 189 ETLARSSSVLIIWTDCDREGEHIGSEIRDAA---LKGNRNIQVRRARFSNVERGHILSAA 245
Query: 161 WNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGF 220
LV + + +V AR ELDLRIG AFTR+ T +G G + +ISYG CQ PTLGF
Sbjct: 246 RRLVALDQRQVDAVAARIELDLRIGFAFTRFLTNNLRGLGGPMGELMISYGSCQFPTLGF 305
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTV 280
V+R+ +++ F PE +W + L G+ VS W+R +FD++ + ++ + + V
Sbjct: 306 VVDRYFRVKNFVPEAFWSIKLVHEREGMKVSFGWARNRLFDRAAVTILYERCLRAREAVV 365
Query: 281 VDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP 340
VQ K KP L TVEL ++A+ L M AM +AE+LY +G++SYPRTET ++
Sbjct: 366 KKVQEKPTKKWKPLPLTTVELQKMATRFLRMTGQQAMTVAEKLYNKGFISYPRTETDRFD 425
Query: 341 ENFDLVAVLRQQESSPDWGDHVREVLSNG-ISKPRKGK-DVGDHPPITPTKLATRTQLDG 398
+ +L ++ +Q WG RE++ G ++PR+GK D HPPI P A T LD
Sbjct: 426 KGMNLRGLVEKQFPDGRWGAFARELIEGGRFNQPRQGKNDDKAHPPIHPITCAAPTVLDE 485
Query: 399 DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKN 458
++Y+ +VR F+ D + +EMF +L + V +
Sbjct: 486 QERKVYELVVRRFLACCSDDAKGMATDVEVGYGEEMFAAHGVIVLERNYLDVYPYENWTG 545
Query: 459 ES-IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQ 517
+ +P F+ G+ M E KT+PP YLTE++LI+LM+ +GIGTDA++ HI I +
Sbjct: 546 TAMLPKFEVGERFEPTEAMMTEGKTSPPSYLTEADLIALMDANGIGTDATMAEHIEKIQE 605
Query: 518 RNYV 521
R YV
Sbjct: 606 RQYV 609
>gi|410082299|ref|XP_003958728.1| hypothetical protein KAFR_0H01830 [Kazachstania africana CBS 2517]
gi|372465317|emb|CCF59593.1| hypothetical protein KAFR_0H01830 [Kazachstania africana CBS 2517]
Length = 656
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 188/538 (34%), Positives = 275/538 (51%), Gaps = 42/538 (7%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ LDF + W K + ELF P + + K+ + EA++ ++L++
Sbjct: 56 MTSVAGHLSSLDFDNSQYGWGKCNIFELFDAPLSELMDKNQQKIAENIKREARNADYLMI 115
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I +EV +A + + V+RA FS + I A N K ++
Sbjct: 116 WTDCDREGEYIGWEVFQAAQKGNRRLTDGLVYRAIFSHLERSHILNAAKNPGKLDMRSVS 175
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDL------------------DASLISYGPCQ 214
+V R ELDLR G +FTR T K + + +ISYGPCQ
Sbjct: 176 AVGTRIELDLRTGVSFTRLLTGTMGKKVQEANNISNDRSNGNSRAGNKNEKVIISYGPCQ 235
Query: 215 TPTLGFCVERHDKIRTFKPEPYWLLDLTLN--LNGVAVSVTWSRGHIFDK-STCNVFFKA 271
PTLGF V+R+++I+ F PE +W + L LN NG++ + W RGH+FD+ S ++ +
Sbjct: 236 FPTLGFVVDRYERIKHFTPEEFWYIQLQLNDEANGLSTTFQWDRGHLFDRLSVLALYENS 295
Query: 272 VE-KEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVS 330
+E V+D+QS SK +P L TVEL + + L + ++ AE+LY +G++S
Sbjct: 296 LEFAGNKAKVIDLQSKPTSKYRPLPLTTVELQKNCARYLRLNAKQSLAAAEKLYQKGFLS 355
Query: 331 YPRTETTQYPENFDLVAVLRQQ----ESSPD----WGDHVREVLS------NGISKPRKG 376
YPRTET +P DL +++ +Q ES+ W + ++S N PR G
Sbjct: 356 YPRTETDIFPATMDLRSLVEKQAQLDESTNSNKTAWASYAANLISENPETNNRFKFPRSG 415
Query: 377 K-DVGDHPPITP-TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM 434
D HPPI P T LA Q+D R+Y+Y+ RHF+ D A+E
Sbjct: 416 SHDDKAHPPIHPITSLAPNAQIDSIERRVYEYVARHFLACCSEDAKGQTSTLTLDWAEEK 475
Query: 435 FTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESEL 493
FT +L F V W+ + + +P + I +M T+PP +TESEL
Sbjct: 476 FTASGLVVLERNFLDVYPWAKWETTKQLPRLEINQECEISKAEMRSGSTSPPKPMTESEL 535
Query: 494 ISLMEKHGIGTDASIPVHINNICQRNYV-TVTSGRR--LVPTSLGIVLVHGYQKIDRE 548
I LM+ +GIGTDA+I HI I RNY+ + SG+ L PT LGI LVHG++ I E
Sbjct: 536 IMLMDANGIGTDATIAEHIEKIKARNYIRSEKSGKETNLHPTVLGIALVHGFEAIGLE 593
>gi|367027160|ref|XP_003662864.1| hypothetical protein MYCTH_2303986 [Myceliophthora thermophila ATCC
42464]
gi|347010133|gb|AEO57619.1| hypothetical protein MYCTH_2303986 [Myceliophthora thermophila ATCC
42464]
Length = 668
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 167/488 (34%), Positives = 254/488 (52%), Gaps = 6/488 (1%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLA 101
GP +G + MT+V GH+ ++F Y W+ P LF P ++ + +
Sbjct: 46 GPPWGHCSV-TMTAVKGHLTTVEFPGDYKQWEYPPPDRLFDAPIMTVVSSDSKSIAKNIE 104
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMW 161
++A+ LV+W DCD+EGE+I E+ +A R N+ V RARFS + I +A
Sbjct: 105 DQARHASALVIWTDCDREGEHIGSEIRDAARKG---NARIQVKRARFSNVERAHILSAAR 161
Query: 162 NLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
L + + +V AR ELDLRIG AFTR+ T + G L +SYG CQ PTLGF
Sbjct: 162 RLTALDDRQVDAVSARIELDLRIGYAFTRFLTLNLRPLGGPLSNLTLSYGSCQFPTLGFV 221
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV 281
V+R+ +++ F PEP+W + + +G+ V WSR +FD+ + + ++ + V
Sbjct: 222 VDRYFRVKNFVPEPFWGIKVMHERDGIQVGFNWSRHRLFDRMSVVILYERCLAARTAKVT 281
Query: 282 DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPE 341
VQ K KP L TVEL ++A+ L M AM +AE+LY +G++SYPRTET ++ +
Sbjct: 282 KVQEKPTKKWKPLPLTTVELQKMATRFLRMSGQQAMTVAEKLYNKGFISYPRTETDRFDK 341
Query: 342 NFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDA 400
DL A++R+Q WG + ++ +PR+G+ D HPPI P A LD +
Sbjct: 342 GMDLRALVRKQTQDNRWGSFAQALVDGAFQQPRQGRHDDKAHPPIHPITYAAPAALDDNE 401
Query: 401 WRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES 460
R+Y+ + R F+ D + DE FT +L + V + +
Sbjct: 402 KRVYELVTRRFLACCSEDARGMATDVEILYGDETFTAHGVIVLERNYLDVYPYENWTGTA 461
Query: 461 -IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
+P F G+ + E KT+PP YLTE++LI+LM+ +GIGTDA++ HI I +R
Sbjct: 462 QLPRFTVGERFEPTEAMVTEGKTSPPGYLTEADLIALMDANGIGTDATMAEHIEKIQERQ 521
Query: 520 YVTVTSGR 527
YV R
Sbjct: 522 YVQTVVRR 529
>gi|20219039|gb|AAM15783.1|AC104428_4 Putative DNA topoisomerase III [Oryza sativa Japonica Group]
gi|108706350|gb|ABF94145.1| DNA topoisomerase family protein, expressed [Oryza sativa Japonica
Group]
Length = 912
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 169/473 (35%), Positives = 250/473 (52%), Gaps = 55/473 (11%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L EA+ C++LVLWLDCD+EGENI +EV++ NS +WRARFSA+ D++I A
Sbjct: 209 LEEEARKCQWLVLWLDCDREGENIAYEVIDIC---AGANSRLNIWRARFSALIDREIHEA 265
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKY-----GDLDASLISYGPCQ 214
+ +L +PN A +VDARQE+DLRIG +FTR+QT + + GD ++SYGPCQ
Sbjct: 266 VQHLDRPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAFVLDDTGDDRNIILSYGPCQ 325
Query: 215 TPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEK 274
PTLGF VER +I+ +PE +W ++ + + S W RGH+FD S+ V ++ +
Sbjct: 326 FPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGTASFGWIRGHLFDYSSAVVIYEMCVE 385
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRT 334
E TV +V++ K K P L+T+EL + AS M H M++AE LY G++SYPRT
Sbjct: 386 EPMATVQNVRNQEKLKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRT 445
Query: 335 ETTQYPENFDLVAVLRQQESSPDWGDHVREVL----------SNGISKPRKGKDVGDHPP 384
ET + N DL +++ +Q + P+WG + + +L SNG G D HPP
Sbjct: 446 ETDNFSPNTDLHSIVHEQVAHPNWGTYAQRLLDPEARLWRNPSNG------GHDDKAHPP 499
Query: 385 ITPTKL-ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLL 443
I PTK A T + +LY+ +VRHF+ V + + +A E F + +L
Sbjct: 500 IHPTKFSAGETNWTDNHKKLYELVVRHFLACCSQPAVGAETTVEIDIAGEQFNASGRVVL 559
Query: 444 HPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIG 503
+ V + + +P + G ++ GIG
Sbjct: 560 AKNYLDVYRFDSWGGTLLPTYIIG------------------------------QQAGIG 589
Query: 504 TDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
TDA++ HI + R Y T + R PT+LG LV GY ++ EL +P +RS
Sbjct: 590 TDATMHDHIKKLLDRCYATKDANTRFSPTNLGEALVMGYDEMGYELWKPYLRS 642
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEK 87
+TSV GH+M L+F ++ W DP +LF P K
Sbjct: 64 VTSVTGHLMELEFDDRFRRWHSCDPADLFHAPVRK 98
>gi|218192151|gb|EEC74578.1| hypothetical protein OsI_10148 [Oryza sativa Indica Group]
Length = 981
Score = 298 bits (763), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 169/473 (35%), Positives = 250/473 (52%), Gaps = 55/473 (11%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L EA+ C++LVLWLDCD+EGENI +EV++ NS +WRARFSA+ D++I A
Sbjct: 209 LEEEARKCQWLVLWLDCDREGENIAYEVIDIC---AGANSRLNIWRARFSALIDREIHEA 265
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKY-----GDLDASLISYGPCQ 214
+ +L +PN A +VDARQE+DLRIG +FTR+QT + + GD ++SYGPCQ
Sbjct: 266 VQHLDRPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAFVLDDTGDDRNIILSYGPCQ 325
Query: 215 TPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEK 274
PTLGF VER +I+ +PE +W ++ + + S W RGH+FD S+ V ++ +
Sbjct: 326 FPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGTASFGWIRGHLFDYSSAVVIYEMCVE 385
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRT 334
E TV +V++ K K P L+T+EL + AS M H M++AE LY G++SYPRT
Sbjct: 386 EPMATVQNVRNQEKLKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRT 445
Query: 335 ETTQYPENFDLVAVLRQQESSPDWGDHVREVL----------SNGISKPRKGKDVGDHPP 384
ET + N DL +++ +Q + P+WG + + +L SNG G D HPP
Sbjct: 446 ETDNFSPNTDLHSIVHEQVAHPNWGTYAQRLLDPEARLWRNPSNG------GHDDKAHPP 499
Query: 385 ITPTKL-ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLL 443
I PTK A T + +LY+ +VRHF+ V + + +A E F + +L
Sbjct: 500 IHPTKFSAGETNWTDNHKKLYELVVRHFLACCSQPAVGAETTVEIDIAGEQFNASGRVVL 559
Query: 444 HPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIG 503
+ V + + +P + G ++ GIG
Sbjct: 560 AKNYLDVYRFDSWGGTLLPTYIIG------------------------------QQAGIG 589
Query: 504 TDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
TDA++ HI + R Y T + R PT+LG LV GY ++ EL +P +RS
Sbjct: 590 TDATMHDHIKKLLDRCYATKDANTRFSPTNLGEALVMGYDEMGYELWKPYLRS 642
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEK 87
+TSV GH+M L+F ++ W DP +LF P K
Sbjct: 64 VTSVTGHLMELEFDDRFRRWHSCDPADLFHAPVRK 98
>gi|354545471|emb|CCE42199.1| hypothetical protein CPAR2_807480 [Candida parapsilosis]
Length = 615
Score = 298 bits (763), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 173/516 (33%), Positives = 267/516 (51%), Gaps = 16/516 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAF--LANEAKDCEFL 110
MTSV GHI LDF +Y W K LF+ T K F +A EA++ + L
Sbjct: 54 MTSVVGHITNLDFPPQYQ-WGKCAAERLFTAEI----VTKITKQDVFDNIAKEARNADKL 108
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
++W DCD+EGE I E+ +A R N VWR++FS + I A + + ++
Sbjct: 109 MIWTDCDREGEFIGKEIFDAARKGNNRILLTDVWRSKFSHLERNHILRAAKSPISLDMKA 168
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
A +V R ELD R+G +FTR T + + SYG CQ PTLGF V+R+ +++
Sbjct: 169 ASAVSCRMELDFRVGTSFTRLLTDNLKLNNIIDKKDIASYGTCQFPTLGFVVDRYKRVKN 228
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
FKPEP+W ++ L + +W +GHIFDK + ++ K + + +++ +
Sbjct: 229 FKPEPFWYIEPMLRKESKRTTFSWVKGHIFDKLYVLLMYERCLKHEQGEITKLETKQTTN 288
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
+P L TVEL + + M ++ AE+LY +G++SYPRTET +YP D +
Sbjct: 289 YRPLPLTTVELQKDCAKYFKMSAKATLEAAEKLYNRGFLSYPRTETDKYPPTMDFKGIFE 348
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLD-GDAWRLYDYIV 408
+Q+ P WG + +L+NG +PR G D HP I P + L + ++Y+Y+V
Sbjct: 349 KQKQDPRWGPYSEGLLNNGHEQPRNGSHDDHAHPAIHPVNYVSIDSLQTTNEKKVYEYVV 408
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPG 467
R F+ D A DE FT + + + T+ + ++S+P F G
Sbjct: 409 RRFLACCSKDAKGMLTSATLKWGDEFFTTSGLMVTERNYLDIFTYKKWESSKSLPGFHEG 468
Query: 468 DLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGR 527
+ + I S M E +T+PP +TE ELI+LM+ +GIGTDA+I HI+ I R YVT
Sbjct: 469 EKVKISSGLMKEGRTSPPQLMTEPELIALMDANGIGTDATIAEHIDKIMSRKYVTKMKRN 528
Query: 528 R---LVPTSLGIVLVHGYQKIDRE---LVEPTMRSA 557
+ + P+ LGI L+ G+ K++ L +P +R A
Sbjct: 529 KIDYIEPSPLGIGLIEGFDKMEFNGISLSKPFLRKA 564
>gi|222624247|gb|EEE58379.1| hypothetical protein OsJ_09535 [Oryza sativa Japonica Group]
Length = 983
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 169/473 (35%), Positives = 250/473 (52%), Gaps = 55/473 (11%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L EA+ C++LVLWLDCD+EGENI +EV++ NS +WRARFSA+ D++I A
Sbjct: 209 LEEEARKCQWLVLWLDCDREGENIAYEVIDIC---AGANSRLNIWRARFSALIDREIHEA 265
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKY-----GDLDASLISYGPCQ 214
+ +L +PN A +VDARQE+DLRIG +FTR+QT + + GD ++SYGPCQ
Sbjct: 266 VQHLDRPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAFVLDDTGDDRNIILSYGPCQ 325
Query: 215 TPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEK 274
PTLGF VER +I+ +PE +W ++ + + S W RGH+FD S+ V ++ +
Sbjct: 326 FPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGTASFGWIRGHLFDYSSAVVIYEMCVE 385
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRT 334
E TV +V++ K K P L+T+EL + AS M H M++AE LY G++SYPRT
Sbjct: 386 EPMATVQNVRNQEKLKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRT 445
Query: 335 ETTQYPENFDLVAVLRQQESSPDWGDHVREVL----------SNGISKPRKGKDVGDHPP 384
ET + N DL +++ +Q + P+WG + + +L SNG G D HPP
Sbjct: 446 ETDNFSPNTDLHSIVHEQVAHPNWGTYAQRLLDPEARLWRNPSNG------GHDDKAHPP 499
Query: 385 ITPTKL-ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLL 443
I PTK A T + +LY+ +VRHF+ V + + +A E F + +L
Sbjct: 500 IHPTKFSAGETNWTDNHKKLYELVVRHFLACCSQPAVGAETTVEIDIAGEQFNASGRVVL 559
Query: 444 HPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIG 503
+ V + + +P + G ++ GIG
Sbjct: 560 AKNYLDVYRFDSWGGTLLPTYIIG------------------------------QQAGIG 589
Query: 504 TDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
TDA++ HI + R Y T + R PT+LG LV GY ++ EL +P +RS
Sbjct: 590 TDATMHDHIKKLLDRCYATKDANTRFSPTNLGEALVMGYDEMGYELWKPYLRS 642
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEK 87
+TSV GH+M L+F ++ W DP +LF P K
Sbjct: 64 VTSVTGHLMELEFDDRFRRWHSCDPADLFHAPVRK 98
>gi|330914108|ref|XP_003296497.1| hypothetical protein PTT_06616 [Pyrenophora teres f. teres 0-1]
gi|311331314|gb|EFQ95407.1| hypothetical protein PTT_06616 [Pyrenophora teres f. teres 0-1]
Length = 667
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 178/566 (31%), Positives = 270/566 (47%), Gaps = 60/566 (10%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
T V GHI+ DF ++ W P LF P A K + + + +A+ L +
Sbjct: 55 FTCVAGHIVHRDFNDQFKKWHSCPPSALFDAPIVSSIAQDKKIVASNIEAQARYASILYI 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I ++ + + N VWRARFS I + A N ++ + +A
Sbjct: 115 WTDCDREGEHIGSQIRDIA---LKANPNMQVWRARFSNIERAHVIQASQNPIRLDEAQAE 171
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQG---KYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
+V AR ELDLR+G AFTR QT Q + G+ +ISYG CQ PTLGF V+R+ ++R
Sbjct: 172 AVSARIELDLRLGAAFTRMQTFALQNMIPQQGEQRGKIISYGSCQFPTLGFVVDRYLRVR 231
Query: 230 TFKPEPYWLL------DLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV 283
F PEP+W + +L + V V +W RGH+FD+ + F+ K VV +
Sbjct: 232 NFVPEPFWYIKVGHTKELEQTKDKVDVKFSWRRGHLFDRMAVTIIFEKCLLAKTAKVVKM 291
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
SK KP L TVEL ++ S L M M++AE LYT+G++SYPRTET Q+ +
Sbjct: 292 AKKPTSKWKPLPLTTVELQKMGSRFLRMTSQDVMKVAEELYTKGWISYPRTETDQFDKAI 351
Query: 344 DLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWR 402
DL ++ +Q WG + +++ G +PR+G++ HPPI P TQL+
Sbjct: 352 DLRTLVGRQTQDGRWGPFAQNLMNGGFHQPRQGRNNDKAHPPIHPVNYVAPTQLNDRERT 411
Query: 403 LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI- 461
+Y+++VR F+ D V + E F ++ + V + ++ +
Sbjct: 412 VYEFVVRRFLACCSEDAVGEATDIEIDYGGEFFHAHGLTVMARNYLDVYPYDKWESSQVL 471
Query: 462 PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
P + G+ M + +T P+YLTE ELISLM+ +GIGTDA++ HI+ I R YV
Sbjct: 472 PKYTVGETFEPTEASMQDGQTCAPNYLTEPELISLMDANGIGTDATMADHIDRIQMREYV 531
Query: 522 TVTSG--------------------------------------------RRLVPTSLGIV 537
+ + +PT+LG+
Sbjct: 532 IARAKGGGTAAAANGTGRGRGEGRGGRGGRGGRGGAAVGQDGGGGTSGVQEFIPTTLGVA 591
Query: 538 LVHGYQKIDRE--LVEPTMRSAYRVQ 561
L+ GY + E L +P +R VQ
Sbjct: 592 LIEGYDNVGFETSLSKPFLRKEMEVQ 617
>gi|303310917|ref|XP_003065470.1| DNA topoisomerase family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240105132|gb|EER23325.1| DNA topoisomerase family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 618
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 175/520 (33%), Positives = 265/520 (50%), Gaps = 24/520 (4%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLA 101
GP +G+ + MTSV GH+ LDF S++ +W P +LF P K+ + +
Sbjct: 48 GPPWGNSSV-TMTSVIGHLTALDFESEWRHWQSCPPGQLFDAPVVNDVDKDKIGIAENIR 106
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMW 161
N+A+ + L +W DCD+EGE+I EV + N V RA+FS + A
Sbjct: 107 NKARQADALFIWTDCDREGEHIGSEVRT---QAVGANPRIEVKRAKFSNTERAHVLRAAR 163
Query: 162 NLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
N + + + +V AR ELDLRIG AFTR T G L LISYG
Sbjct: 164 NPIALDERQINAVAARIELDLRIGAAFTRLLTLQLGALGGALSERLISYGK--------- 214
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV 281
+ + +++ FKPEPYW + +T +G V+ TWSRG++FD++ + F+ K V
Sbjct: 215 -KTYFRVKNFKPEPYWSIKVTHARDGKTVNFTWSRGNLFDRAAVVMIFERCLTAKTAKVT 273
Query: 282 DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPE 341
V K +P L TV+L + S L M M++AE LYT+G++SYPRTET Q+ +
Sbjct: 274 KVNKKPTKKWRPLPLTTVDLQMMGSKFLRMDSQKVMKVAESLYTKGFISYPRTETDQFDK 333
Query: 342 NFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDA 400
DL ++ +Q WG + + +++ G +PR G+ + HPPI P + L D
Sbjct: 334 GIDLKKLIEKQIQDGVWGQYSQGLMAGGFKQPRSGRHNDQAHPPIHPVTYVAPSVLTADE 393
Query: 401 WRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NE 459
R+Y+++VR F+ D DE F + +L + + + + ++
Sbjct: 394 RRVYEFVVRRFLACCSDDAKGETSEVDIQYGDEKFHAQGLIVLERNYLDIYVYDKWESSQ 453
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
+P F G++ + K+ E KTTPP+YLTE ELI LM+ +GIGTDA++ HI I R
Sbjct: 454 ELPKFTVGEVFEPKEAKITEGKTTPPNYLTEPELIGLMDANGIGTDATMAEHIFKIKDRQ 513
Query: 520 YVTVT----SGR----RLVPTSLGIVLVHGYQKIDRELVE 551
YV +GR +PT LG+ LV GY + +L +
Sbjct: 514 YVATRRRGGNGRNSVEEFIPTKLGVALVEGYDNLVLDLAD 553
>gi|409045159|gb|EKM54640.1| hypothetical protein PHACADRAFT_97897 [Phanerochaete carnosa
HHB-10118-sp]
Length = 705
Score = 297 bits (761), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 184/520 (35%), Positives = 266/520 (51%), Gaps = 30/520 (5%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
F +TSV GH++ DF S Y+NW +P LF P R + L NEA+ + L
Sbjct: 49 FTVTSVTGHLLDHDFDSAYSNWQSCEPFVLFDAPIISRIKKGSETIARNLENEARRAQTL 108
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
++W DCD+EGENI EV R + + V RARFSAI + I A + V ++ +
Sbjct: 109 MIWTDCDREGENIGAEVAGVCR---KVKTAIIVRRARFSAIIAQQIHNAAQHPVNLDMAQ 165
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYG----PCQTPTLGFCVERHD 226
+ +V+AR LDLRIG FTR Q+ Q ++ L +ISYG PCQ PTLGF V R++
Sbjct: 166 SNAVEARTLLDLRIGATFTRLQSLQLQQRFQQLKGDVISYGSTIGPCQFPTLGFVVSRYN 225
Query: 227 KIRTFKPEPYWLLDLTLNL------NGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTV 280
++++F E +W + L L TW RGH+F+ ++ V V
Sbjct: 226 QVKSFVSETFWHIYLALTRIDETTGEESETPFTWRRGHLFELEVALAIYEHVLDNPTANV 285
Query: 281 VDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP 340
V K KP L TV+L + S L + P + IAE LY QG++SYPRTET Q+
Sbjct: 286 TRVTRKNTKKWKPLPLTTVDLQKAGSRLLKISPKKVLDIAEHLYQQGFLSYPRTETDQFD 345
Query: 341 ENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDA 400
FD + ++++Q P WG + S+G K+ HPPI PT A L GD
Sbjct: 346 PQFDFMTLIQKQIVDPAWG----QFASSG------KKNDKAHPPIHPTAHA--GNLAGDE 393
Query: 401 WRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES 460
R+Y+YI R F+ + D + + E F + + V + ++
Sbjct: 394 KRVYEYITRRFLASCSKDALGWETTVDVECGGEEFYATGLTVRERNYLDVFPYDKWSDKE 453
Query: 461 IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNY 520
+P+F + ++ E +T+ P LTE++L++LM+K+GIGTDA+I HI I R Y
Sbjct: 454 LPNFAENEEFMPSICELKEGQTSRPSLLTEADLVALMDKNGIGTDATIAQHIQTIIDRKY 513
Query: 521 V---TVTSGRRLVPTSLGIVLVHGYQKI--DRELVEPTMR 555
V + + LVP++LGI LV GY +I DR L P MR
Sbjct: 514 VMERMQGATKYLVPSTLGIGLVEGYNEIGFDRSLSRPEMR 553
>gi|401420366|ref|XP_003874672.1| putative DNA topoisomerase III [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490908|emb|CBZ26172.1| putative DNA topoisomerase III [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 948
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 187/518 (36%), Positives = 279/518 (53%), Gaps = 28/518 (5%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+M F NW LFS P K + L A E LVL
Sbjct: 50 VTSVAGHLMEDQFPPNTKNWSTYPFQGLFSAPITKYVRADLEPVKKNLEALASRAETLVL 109
Query: 113 WLDCDKEGENICFEVMEAV---RHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
WLDCD+EGENICFEVM+ V R Q+ + RA FSA+T +D+ A+ NL P+
Sbjct: 110 WLDCDREGENICFEVMQVVQSKRPQVQVK------RAHFSALTARDLLNAVHNLKLPDKR 163
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
+ +V+ARQE+DLRIG AFTRYQT F+ + + ++S+GPCQ PTLGF V R+ + +
Sbjct: 164 LSDAVEARQEMDLRIGAAFTRYQTVKFRHLFAAIPG-VLSFGPCQFPTLGFVVRRYWQQQ 222
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFF----KAVEKEKHV-TVVDVQ 284
F PE ++ TL L SRG ++D+ + + +A + H + +VQ
Sbjct: 223 GFVPEDFF----TLQLQHGDTKFHSSRGSMYDQVAATLIYEDMLQAAAADGHKGRITNVQ 278
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP-ENF 343
+ P L TV + ++A++ L + M +AE LY +G +SYPRTET Y +
Sbjct: 279 QRPSHRRPPVPLATVVMQKLAATHLRITSERCMTLAESLYQEGLISYPRTETDSYTFQES 338
Query: 344 DLVAVLRQQESSPDWGDHVREVLSNGIS--KP--RKGKDVGDHPPITPTKLATRTQLDGD 399
+L+ ++R Q ++ D ++ +L++ + +P R G D HPPI PTK TQ +
Sbjct: 339 ELLELVRVQTANADVAEYATAMLADIATHVRPPLRGGHDDKAHPPIHPTKAWNATQ--DE 396
Query: 400 AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
RLY+ IVRHF+ +L D V E+F+ +L G+ + + N
Sbjct: 397 RGRLYNLIVRHFLASLSPDAVAATTQVSAEFGGELFSAGGTTILQRGWLDIFPYERWNNT 456
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
IP+++ GD+ +V + + T+ P +LTE+ LISLM+ +GIGTDA+I HI + R
Sbjct: 457 CIPNYQIGDMFQPTAVPLKKGCTSAPPHLTETHLISLMDSNGIGTDATIAQHIKTVLDRE 516
Query: 520 YVTVTSGRRLVPTSLGIVLVHGYQKID-RELVEPTMRS 556
YV G+ LVPT+LGI L Y+ + L++P +R+
Sbjct: 517 YVR-REGQSLVPTTLGIALASAYESLGLASLLQPQLRA 553
>gi|388581731|gb|EIM22038.1| prokaryotic type I DNA topoisomerase [Wallemia sebi CBS 633.66]
Length = 797
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 180/523 (34%), Positives = 270/523 (51%), Gaps = 59/523 (11%)
Query: 46 GDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAK 105
G V F +T+V GH+ DF Y W DPL+LF E A + L NEA+
Sbjct: 51 GRQVSFTVTAVAGHLTASDFGKDYRKWHSCDPLQLFDGRVEVSTAGNMSAIEQNLKNEAR 110
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
L++W DCD+EGE+I E+M R N V RA+FSAI I A + +
Sbjct: 111 SSSHLMIWTDCDREGEHIGAEIMSICR---KANPRIEVSRAKFSAIIPNQIHNAARHPAE 167
Query: 166 PNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERH 225
++ + R+V+AR ELDLRIG AFTR T + +LD + GPCQ PTLGF V+++
Sbjct: 168 LDMKQVRAVEARIELDLRIGAAFTRLMTMNLSKQIAELD---VHTGPCQFPTLGFVVDQY 224
Query: 226 DKIRTFKPEPYWLLDLTL---NLNGVAVSVT--WSRGHIFDKSTCNVFFK--AVEKEKHV 278
+I+ F E +W + +++ + +G +V W R +FD + ++ A+ V
Sbjct: 225 QRIKDFISEAFWYIFVSIIHRDDDGKDSNVVFHWQRDRLFDPDLSFILYEQCAINPSARV 284
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQ 338
T +IAE+LY +G++SYPRTET Q
Sbjct: 285 T--------------------------------------KIAEKLYQKGFLSYPRTETDQ 306
Query: 339 YPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLD 397
Y +FD +++ +Q + WG + R + +G KPR+GK + HPPI PT A+ L
Sbjct: 307 YDPSFDFHSLIDKQANDGVWGSYARSLTDSGFDKPREGKKNDKAHPPIHPTAHAS--GLT 364
Query: 398 GDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK 457
G+ R+Y+YI R F+ + D A+ +A E+F LL + V +
Sbjct: 365 GNDKRVYEYITRRFLASCSRDAKGKNTNAEVEIAGEIFKASGSVLLEKNYLNVFPYDKWS 424
Query: 458 NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQ 517
+ +IP+F G + ++ E KTTPP+ LTE++L+SLM+KHGIGTDA+I HI+ I
Sbjct: 425 SHTIPNFTVGQVFTPSVCELREGKTTPPNLLTEADLVSLMDKHGIGTDATIAEHIHKIID 484
Query: 518 RNYV---TVTSGRRLVPTSLGIVLVHGYQKIDRE--LVEPTMR 555
R YV + + LVP++LG+ LV GY K++ E + +P +R
Sbjct: 485 REYVMEHKQGNTKYLVPSTLGVALVEGYNKMNLEKSVSKPQLR 527
>gi|363751663|ref|XP_003646048.1| hypothetical protein Ecym_4154 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889683|gb|AET39231.1| hypothetical protein Ecym_4154 [Eremothecium cymbalariae
DBVPG#7215]
Length = 638
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 194/548 (35%), Positives = 281/548 (51%), Gaps = 40/548 (7%)
Query: 40 WVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAF 99
WVG D+ MT+V GH++ DF +Y+ W+ DP ELF + P ++
Sbjct: 46 WVGQQAVDVT---MTAVAGHLVHQDFGQEYS-WNMCDPRELFRAEIVE---IPNREIADN 98
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVME-AVRHQININSPKTVWRARFSAITDKDIKA 158
+ E +D ++L++W DCD+EGE I +E+ + A+R ++ + + RA FS + +
Sbjct: 99 IGQECRDAQYLMIWTDCDREGEAIGWEIAQVAMRCNPQLDESR-IHRAVFSHLGRDHVTR 157
Query: 159 AMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKY----------GDLDASLI 208
A N V+ + +V AR E+DLR G AFTR T Q K +LI
Sbjct: 158 AANNPVRIDKNAVDAVKARCEIDLRAGYAFTRLLTGTLQCKVEAGPGGAARGNSKKRALI 217
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVA----VSVTWSRGHIFDKST 264
SYG CQ PTLGF V+R+++I+ F E +WLL TL +G A V +W RGH+FD+
Sbjct: 218 SYGTCQFPTLGFVVDRYERIQRFVTEEFWLLQATLEESGSAGGGKVLFSWDRGHLFDRLC 277
Query: 265 CNVFFKAVEK--EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAER 322
++ + E VV V S SK +P L TVEL + S L M ++ AE+
Sbjct: 278 VLGIYETCSEHAENRAKVVHVSSKETSKYRPLPLTTVELQKNCSKFLRMSAKQSLDAAEK 337
Query: 323 LYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLS-------NGISKPRK 375
LY +G++SYPRTET + + DL A+++QQ + WG + +LS NG PR
Sbjct: 338 LYQKGFISYPRTETDVFSKQMDLRALVQQQTAHQQWGAYASGLLSNENSSSGNGFQWPRA 397
Query: 376 GK-DVGDHPPITP-TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADE 433
G D HPPI P T + L+ D R+Y+Y+VRHF+ D + E
Sbjct: 398 GNHDDQAHPPIHPVTCVQPGGDLNFDEKRVYEYVVRHFLACCSQDGKGRSSKVQLQWHTE 457
Query: 434 MFTMEAKYLLHPGFTGVMTWSAMKNES-IPDFKPGDLIPIQSVKMVERKTTPPDYLTESE 492
F+ +L F V T+ + + +P GD I + V+M KT PP Y+TESE
Sbjct: 458 SFSATGLQVLAENFLQVYTYQKWTSSAQLPILGLGDDILLSKVEMKSGKTLPPKYMTESE 517
Query: 493 LISLMEKHGIGTDASIPVHINNICQRNYVTV---TSGRRLVPTSLGIVLVHGYQKIDRE- 548
LI LM+ +GIGTDA+I HI I +R Y+ + PT LG LVHG++ I E
Sbjct: 518 LIMLMDANGIGTDATIAEHIEKIQERQYIKADGTAKSKVFKPTVLGRSLVHGFEDIGLEE 577
Query: 549 -LVEPTMR 555
+P +R
Sbjct: 578 SFAKPFLR 585
>gi|91772728|ref|YP_565420.1| DNA topoisomerase [Methanococcoides burtonii DSM 6242]
gi|91711743|gb|ABE51670.1| DNA topoisomerase [Methanococcoides burtonii DSM 6242]
Length = 780
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 176/517 (34%), Positives = 275/517 (53%), Gaps = 16/517 (3%)
Query: 47 DLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKD 106
D L+K+ + GHIMG D+ +++NW VDP L T+ + K + + +K
Sbjct: 41 DGSLWKIMGLAGHIMGYDYPEEFHNWRDVDPAALLD--TDPVKQINKASFGSAILKISKG 98
Query: 107 CEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKP 166
+ LVL D D+EGENI FE +++ ++ S TV RARFS+++ +I+ A +LV+P
Sbjct: 99 ADLLVLACDFDREGENIGFEA-KSIAEKV---SDATVKRARFSSLSKSEIEKAFNDLVEP 154
Query: 167 NIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHD 226
+ A S +ARQ LDL++G +FTR+ T + + ++S GPCQTPT GF ER
Sbjct: 155 DENMAMSAEARQILDLKMGASFTRFVTLSVRERA--RTKGVLSIGPCQTPTCGFVYEREL 212
Query: 227 KIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSS 286
IR F +W ++ G + GHI+DK FK ++ K +
Sbjct: 213 AIRKFDSRDFWKIEGVFTGKGADIIGVHRGGHIYDKEKAAAIFKKLKGCKTAVISKKTVK 272
Query: 287 TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLV 346
+ P LNT E ++ AS LG+ P A++IAE+LY G+ SYPRTET Y ++ D
Sbjct: 273 EMNTNPPFPLNTNEFLKRASKYLGVSPDQALEIAEQLYLSGFTSYPRTETNMYADDMDFA 332
Query: 347 AVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKLATRTQLDG-----DA 400
++L+ + D+ D +LS PR GK G DHPPI P K +R +++ A
Sbjct: 333 SILKGF-TKGDYQDFALLLLSQKAIVPRNGKKDGHDHPPIHPIKAGSRMEVERAIKMPRA 391
Query: 401 WRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES 460
W +YD IVRHFI L V+ + + ++ DE+F + G+ V + +++
Sbjct: 392 WDVYDLIVRHFIANLLPPAVFEKTRFEITMEDELFDSTGSIQKNAGWLAVYPFEKPQDKI 451
Query: 461 IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNY 520
+P G+++ ++ + ++ +TTPP LTE+EL++LM+KHGIGT A+ P HI +R Y
Sbjct: 452 LPALDLGEVLDVKKITNIKSQTTPPKRLTEAELLTLMDKHGIGTKATAPSHIETNKKRGY 511
Query: 521 VTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
V G+ + G L+ LV+P +RS+
Sbjct: 512 FEV-KGKTIAILDTGFTLMDALNSSVPILVKPDIRSS 547
>gi|367050678|ref|XP_003655718.1| hypothetical protein THITE_2119715 [Thielavia terrestris NRRL 8126]
gi|347002982|gb|AEO69382.1| hypothetical protein THITE_2119715 [Thielavia terrestris NRRL 8126]
Length = 667
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 169/488 (34%), Positives = 255/488 (52%), Gaps = 7/488 (1%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLA 101
GP +G + MT+V GH+ L+F + W+ P LF P + T + +
Sbjct: 46 GPPWGRCSV-TMTAVKGHLTALEFPPDFKQWEYPPPDRLFDAPVQTVIPTDNKHIAKNIE 104
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMW 161
++A+ LV+W DCD+EGE+I E+ +A R N + RARFS + I +A
Sbjct: 105 DQARRASALVIWTDCDREGEHIGSEIRDAARKG---NGQIQIKRARFSNVERAHILSAAR 161
Query: 162 NLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
L+ + + +V AR ELDLRIG AFTR+ T + G + ISYG CQ PTLGF
Sbjct: 162 RLIALDEKQVDAVSARIELDLRIGYAFTRFLTLNLRPLGGPMSNLTISYGSCQFPTLGFV 221
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV 281
V+R+ +++ F PE +W + + +G+ V+ W+R +FD+ + ++ + V
Sbjct: 222 VDRYFRVKNFVPEAFWGIKMMHERDGIKVNFNWARHRLFDRMAVVILYERCLAARTAKVT 281
Query: 282 DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPE 341
VQ K KP L TVEL ++A+ L M AM +AE+LY +G++SYPRTET ++ +
Sbjct: 282 KVQERPTKKWKPLPLTTVELQKMATRFLRMSGQQAMTVAEKLYNKGFISYPRTETDRFDK 341
Query: 342 NFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDA 400
DL A++R+Q WG + ++ G +PR+G+ D HPPI P A T LD
Sbjct: 342 GMDLRALVRKQIQDNRWGQFAQNLVDGGFQQPREGRHDDKAHPPIHPITYAAPTVLDDGE 401
Query: 401 WRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES 460
R+Y+ I R F+ D + DE F +L + V + +
Sbjct: 402 RRVYELITRRFLACCSQDAQGMATDVEVLYGDETFAAHGVIVLARNYLDVYPYENWTGTA 461
Query: 461 -IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
+P F G+ + E KT+PP YLTE++LI+LM+ +GIGTDA++ HI I +R
Sbjct: 462 ELPKFTLGERFEPTEAMVTEGKTSPPGYLTEADLIALMDANGIGTDATMAEHIEKIQERQ 521
Query: 520 YV-TVTSG 526
YV TV G
Sbjct: 522 YVRTVERG 529
>gi|19113553|ref|NP_596761.1| DNA topoisomerase III [Schizosaccharomyces pombe 972h-]
gi|6686026|sp|O60126.2|TOP3_SCHPO RecName: Full=DNA topoisomerase 3; AltName: Full=DNA topoisomerase
III
gi|4388617|emb|CAA19038.1| DNA topoisomerase III [Schizosaccharomyces pombe]
gi|5836087|gb|AAD22485.2| topoisomerase 3 [Schizosaccharomyces pombe]
Length = 622
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 169/519 (32%), Positives = 268/519 (51%), Gaps = 13/519 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ F S+Y++W V LF + L + EA++ ++L +
Sbjct: 55 MTSVSGHLTEASFPSEYSSWSSVPQDVLFDAQIITSVSKNAEVLADNIKKEARNAQYLYI 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I E+ R N V RA F+ + I +A + A
Sbjct: 115 WTDCDREGEHIGVEISNVARAS---NPSIQVIRADFNNLERSHIISAAKRPRDVSKNAAD 171
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+VDAR ELD R+G FTR QT Q + L +ISYGPCQ PTLGF V+R ++ F
Sbjct: 172 AVDARIELDFRLGAIFTRLQTIQLQKSFDILQNKIISYGPCQFPTLGFVVDRWQRVEDFV 231
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE YW L G + W R +FD+ T + + + K VV++ K+K K
Sbjct: 232 PETYWHLRFVDKRQGKTIQFNWERAKVFDRLTTMIILENCLECKTAKVVNITQKPKTKYK 291
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L+TVEL ++ L + +++AE LYT G+VSYPRTET Q+ + +L A++++
Sbjct: 292 PLPLSTVELTKLGPKHLRISAKKTLELAENLYTNGFVSYPRTETDQFDSSMNLHAIIQKL 351
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQL-DGDAWRLYDYIVRH 410
+ +W + +L+ PRKGK + HPPI P ++ R+ L D W++Y+ I R
Sbjct: 352 TGAQEWDSYAEGLLAGDYRPPRKGKHNDRAHPPIHPVQMVHRSALPSQDHWKVYELITRR 411
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDL 469
F+ + + + + + +E+F+ + + + V + + ++ +P+++ +
Sbjct: 412 FLACCSDNAKGAETLVQVKMEEELFSKKGLLVTEKNYLEVYPYEKWESSDQLPEYRLHEE 471
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGR-- 527
+ M++ T+ P Y+TE ELI+LM+ +GIGTDA++ HI + +R YV R
Sbjct: 472 FQPHILDMMDSSTSSPSYITEPELIALMDANGIGTDATMAEHIEKVQEREYVIKRKKRGQ 531
Query: 528 ---RLVPTSLGIVLVHGYQKIDRE--LVEPTMRSAYRVQ 561
VP+SLG+ L GY +I E L +P +R VQ
Sbjct: 532 GVTEFVPSSLGVALAKGYDEIGLEWSLTKPFLRKEMEVQ 570
>gi|146104103|ref|XP_001469727.1| putative DNA topoisomerase III [Leishmania infantum JPCM5]
gi|134074097|emb|CAM72839.1| putative DNA topoisomerase III [Leishmania infantum JPCM5]
Length = 947
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 187/518 (36%), Positives = 278/518 (53%), Gaps = 28/518 (5%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+M F NW LFS P K + L A + LVL
Sbjct: 50 VTSVAGHLMEDQFPPNTKNWSTYPFQGLFSAPITKYVRADLEPVKKNLEALAGRADTLVL 109
Query: 113 WLDCDKEGENICFEVMEAV---RHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
WLDCD+EGENICFEVM+ V R Q+ + RA FSA+T +D+ A+ NL P+
Sbjct: 110 WLDCDREGENICFEVMQVVQSKRPQVQVK------RAHFSALTARDLLNAVHNLKLPDKR 163
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
+ +V+ARQE+DLRIG AFTRYQT F+ + + ++S+GPCQ PTLGF V R+ + +
Sbjct: 164 LSDAVEARQEMDLRIGAAFTRYQTVKFRHLFAAIPG-VLSFGPCQFPTLGFVVRRYWQQQ 222
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFF----KAVEKEKHV-TVVDVQ 284
F PE ++ TL L SRG ++D+ + + +A E H + +VQ
Sbjct: 223 GFVPEDFF----TLQLQHGDTKFHSSRGSMYDQVAATLIYEDMLQAAAAEGHKGRITNVQ 278
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP-ENF 343
+ P L TV + ++A++ L + M +AE LY +G +SYPRTET Y +
Sbjct: 279 QRPSHRRPPVPLATVVMQKLAATHLRIPSERCMTLAESLYQEGLISYPRTETDSYTFQES 338
Query: 344 DLVAVLRQQESSPDWGDHVREVLSNGISKPR----KGKDVGDHPPITPTKLATRTQLDGD 399
+L+ ++R Q ++ D ++V +L++ ++ R G D HPPI PTK TQ +
Sbjct: 339 ELLELVRVQIANADVAEYVAAMLADIATRVRPPLRGGHDDKAHPPIHPTKAWNATQ--DE 396
Query: 400 AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
RLY+ IVRHF+ +L D V E+F+ +L G+ + + N
Sbjct: 397 RGRLYNLIVRHFLASLSPDAVAATTQVSAEFGGELFSTGGTTILQRGWLDIFPYERWNNT 456
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
IP+++ GD +V + + T+ P +LTE+ LISLM+ +GIGTDA+I HI + R
Sbjct: 457 CIPNYQIGDTFQPTAVPLKKGCTSAPPHLTETHLISLMDSNGIGTDATIAQHIKTVLDRE 516
Query: 520 YVTVTSGRRLVPTSLGIVLVHGYQKID-RELVEPTMRS 556
YV G+ LVPT+LGI L Y+ + L++P +R+
Sbjct: 517 YVK-REGQSLVPTTLGIALASAYESLGLASLLQPQLRA 553
>gi|402086932|gb|EJT81830.1| DNA topoisomerase III [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 671
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 166/485 (34%), Positives = 255/485 (52%), Gaps = 9/485 (1%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLA 101
GP +G + MT V GH+ G++F ++ +W P LF+ P + A K ++ +
Sbjct: 46 GPPWGSCEV-TMTCVLGHLTGMEFGPEFKDWRYPPPESLFTAPVSTKTAEDKKEIAQNIQ 104
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMW 161
+A+ L +W DCD+EGE+I E++E R V RARFS I I A
Sbjct: 105 RQAQYARALFIWTDCDREGEHIGSEIVEEAR---KTKPGIQVKRARFSNIERAHILHAAK 161
Query: 162 NLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
NL + + ++V AR ELD+RIG AFTR+ T + G L ++SYG CQ PTLGF
Sbjct: 162 NLANLDDRQVQAVQARIELDIRIGFAFTRFLTNNLRTLGGPLAEHMLSYGSCQFPTLGFV 221
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV 281
V+R+ +++ F PEP+W + L ++ +G + W+RG +FD+ + + ++ K V
Sbjct: 222 VDRYFRVKNFVPEPFWTIKLVVSKDGKTATFNWTRGRLFDRVSVVILYERCLSAKTAKVT 281
Query: 282 DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPE 341
VQ K KP L TVEL ++A+ L + AM +AE+LY +G++SYPRTET ++ +
Sbjct: 282 KVQEKPTKKWKPLPLTTVELQKMATRFLRITGQQAMDVAEKLYQKGFISYPRTETDRFDK 341
Query: 342 NFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDG-- 398
+L A++++Q WG + ++ G +PR GK D HPPI P A L+
Sbjct: 342 GMNLRALVQKQTQDGRWGTFAQGLMDGGFQQPRNGKHDDKAHPPIHPITYAASGALNDVG 401
Query: 399 -DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK 457
+A RLY+ +VR F+ D DE F +L + V +
Sbjct: 402 PEAGRLYELVVRRFLACCSEDAKGMATDMHVQYGDETFHAHGVVVLERNYLDVYPYENWT 461
Query: 458 NES-IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
+ + +P G+ + M E KTT P +LTE++LI+LM+ +GIGTDA++ HI I
Sbjct: 462 DSAQLPRLTMGEHVTPVEAMMTEGKTTAPGHLTEADLIALMDANGIGTDATMAEHIQTIQ 521
Query: 517 QRNYV 521
R Y
Sbjct: 522 TRQYA 526
>gi|410669965|ref|YP_006922336.1| DNA topoisomerase [Methanolobus psychrophilus R15]
gi|409169093|gb|AFV22968.1| DNA topoisomerase [Methanolobus psychrophilus R15]
Length = 774
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 180/519 (34%), Positives = 284/519 (54%), Gaps = 20/519 (3%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
+++ + GHIMG DF + NNW DP L P K K A +A +K + +
Sbjct: 45 WRIMGLSGHIMGYDFPPELNNWRGCDPAVLLDTPPVKN--VTKQPYAAAIALVSKGADEI 102
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
+L D D+EGENI FE +++ +++ SP V RARFS++++ +I+ A NLV+P+
Sbjct: 103 ILACDFDREGENIGFEA-KSLAEKVS-KSP--VKRARFSSLSESEIRQAFSNLVEPDFNL 158
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
A S +ARQ LDL++G AFTR+ T Q + D +IS GPCQTPT GF ER I
Sbjct: 159 AMSAEARQILDLKMGAAFTRFLTLAVQQRARTKD--IISIGPCQTPTCGFVYEREKLILD 216
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
FK + +W ++ T + + + + T GHI DK+ + F ++ K +
Sbjct: 217 FKSKDFWKIEGTFSHSNIDFTGTHRSGHIHDKAKADEIFSRIKGSKTGILAKKSVKESIT 276
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDL-VAVL 349
+ P LNT E ++ AS LG+ P +A++IAE+LY G+ SYPRTET +Y ++FD + VL
Sbjct: 277 SPPYPLNTTEFLKRASKFLGISPENALEIAEQLYLSGFTSYPRTETNKYADDFDFKMKVL 336
Query: 350 RQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDG-----DAWRL 403
+S ++ ++ +LS R G +D DHPPI P + AT+ ++ DAW++
Sbjct: 337 --GFASGEYREYAMAILSRLPITCRNGTRDGHDHPPIHPIRAATKADVEKSVRMPDAWKV 394
Query: 404 YDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPD 463
YD + RHF+ L ++ + + SV +E+F + + G+ V + ++ +PD
Sbjct: 395 YDLVARHFLANLMQPAIFEKTHLEISVKEEIFDATGSVMKNAGWLAVYPFETKNDKFLPD 454
Query: 464 FKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV 523
+ I I+ + + +TTPP LTE+EL++LM+K+GIGT A+ P HI +R Y
Sbjct: 455 IAVKEEIAIKKLSNTKSQTTPPKRLTEAELLTLMDKYGIGTKATAPSHIETNKKRGYFE- 513
Query: 524 TSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQA 562
T G+ + G L+ LV+P +RS R++A
Sbjct: 514 TKGKTISILDTGFTLMEALDSTVPILVKPDVRS--RIEA 550
>gi|50311957|ref|XP_456010.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49645146|emb|CAG98718.1| KLLA0F20724p [Kluyveromyces lactis]
Length = 659
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 190/545 (34%), Positives = 283/545 (51%), Gaps = 48/545 (8%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MT+V GH+M L F+ W K DP LF PT K+ L NE + L++
Sbjct: 57 MTAVAGHLMNLAFSQNEYGWGKCDPNLLFDAPTIDEMDD---KIVKNLQNEGRHATHLMI 113
Query: 113 WLDCDKEGENICFEVMEAV-RHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE I +E+++AV R ++ S +V+RA FS + I A+ +P +
Sbjct: 114 WTDCDREGECIGWEIVQAVNRSNSSLVSSDSVYRAVFSHLEPSHIIASA---NRPRKLDQ 170
Query: 172 RSVDA---RQELDLRIGCAFTRYQTKFFQG------KYGDL----DASLISYGPCQTPTL 218
R VDA RQE+DLR G AFTR T ++ +Y L D +ISYG CQ PTL
Sbjct: 171 RQVDAVRARQEIDLRAGLAFTRLLTGNYRSVLQSDLEYKQLAKKDDKPVISYGTCQFPTL 230
Query: 219 GFCVERHDKIRTFKPEPYWLLDLTL-NLNGV--AVSVTWSRGHIFDK-STCNVFFKAVEK 274
GF V+R++++ F PE +W + L++ +L+G V W RGH+FD+ + +++ +
Sbjct: 231 GFVVDRYERVINFIPEQFWHILLSVKDLDGSESKVKFQWERGHLFDRLAVLSIYEHCIGT 290
Query: 275 -EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333
E V+ V S K +P L TVEL + S + + AE+LY QGY+SYPR
Sbjct: 291 CEDRAKVIHVSSKDTKKFRPLPLTTVELQKNCSRFFKLSAKKTLDAAEKLYQQGYISYPR 350
Query: 334 TETTQYPENFDLVAVLRQQESSPDWGDHVREVL------SNGISKPRKGK-DVGDHPPIT 386
TET ++P DL ++L + + +WG +V ++ +N PR G D HPPI
Sbjct: 351 TETDKFPAKTDLKSLLNKHQGHSEWGPYVTNLMNENSTSTNKYQWPRSGNHDDQAHPPIH 410
Query: 387 PTKLA----TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYL 442
P T ++ D +Y+Y+V+HF+ D K E F +
Sbjct: 411 PILCVDIAKTDNRMTSDEKTVYNYVVKHFLACCSTDARGRSTTLKLDWGGETFYANGIQV 470
Query: 443 LHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHG 501
L F + W+ K N+++P ++ D + + +M +T+PP ++TESELI LM+ +G
Sbjct: 471 LERNFLDIYQWADWKSNDTLPAYQMSDDVVVSKTEMKSGQTSPPKHMTESELIMLMDANG 530
Query: 502 IGTDASIPVHINNICQRNYVTVTSGRR---------LVPTSLGIVLVHGYQKIDRE--LV 550
IGTDA+I HI I RNY+ V +G +PTSLG LVHG++KI E
Sbjct: 531 IGTDATIADHIEKIKSRNYIKVQTGSGSGAKKTASVFLPTSLGRSLVHGFEKIGLEESFS 590
Query: 551 EPTMR 555
+P +R
Sbjct: 591 KPFLR 595
>gi|157877136|ref|XP_001686899.1| putative DNA topoisomerase III [Leishmania major strain Friedlin]
gi|68129974|emb|CAJ09282.1| putative DNA topoisomerase III [Leishmania major strain Friedlin]
Length = 947
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 186/518 (35%), Positives = 278/518 (53%), Gaps = 28/518 (5%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+M F NW LFS P K + L A + LVL
Sbjct: 50 VTSVAGHLMEDQFPPNTKNWSTYPFQGLFSAPITKYVRADLEPVKKNLEALAGRADTLVL 109
Query: 113 WLDCDKEGENICFEVMEAV---RHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
WLDCD+EGENICFEVM+ V R Q+ + RA FSA+T +D+ A+ NL P+
Sbjct: 110 WLDCDREGENICFEVMQVVQSKRPQVQVK------RAHFSALTARDLLNAVHNLKLPDKR 163
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
+ +V+ARQE+DLRIG AFTRYQT F+ + + ++S+GPCQ PTLGF V R+ + +
Sbjct: 164 LSDAVEARQEMDLRIGAAFTRYQTVKFRHLFAAIPG-VLSFGPCQFPTLGFVVRRYWQQQ 222
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFK----AVEKEKHV-TVVDVQ 284
F PE ++ TL L SRG ++D+ + ++ A E H + +VQ
Sbjct: 223 GFVPEDFF----TLQLQHGDTKFHSSRGSMYDQVAATLIYEDMLLAAAAEGHKGRITNVQ 278
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP-ENF 343
+ P L TV + ++A++ L + M +AE LY +G +SYPRTET Y +
Sbjct: 279 QRPSHRRPPVPLATVVMQKLAATHLRIPSERCMALAESLYQEGLISYPRTETDSYTFQES 338
Query: 344 DLVAVLRQQESSPDWGDHVREVLSNGISKPR----KGKDVGDHPPITPTKLATRTQLDGD 399
+L+ ++R Q S+ D ++ +L++ ++ R G+D HPPI PTK TQ +
Sbjct: 339 ELLELVRVQISNADVAEYATAMLADIATRVRPPLRGGRDDKAHPPIHPTKAWNATQ--DE 396
Query: 400 AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
RLY+ IVRHF+ +L D V E+F+ +L G+ + + +
Sbjct: 397 RGRLYNLIVRHFLASLSPDAVAATTQVSAEFGGELFSTGGTTILQRGWLDIFPYERWNST 456
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
IP+++ GD +V + + T+ P +LTE+ LISLM+ +GIGTDA+I HI + R
Sbjct: 457 CIPNYQIGDAFQPTAVPLKKGCTSAPPHLTETHLISLMDSNGIGTDATIAQHIKTVLDRE 516
Query: 520 YVTVTSGRRLVPTSLGIVLVHGYQKID-RELVEPTMRS 556
YV G+ LVPT+LGI L Y+ + L++P +R+
Sbjct: 517 YVK-REGQSLVPTTLGIALASAYESLGLASLLQPQLRA 553
>gi|430813900|emb|CCJ28786.1| unnamed protein product [Pneumocystis jirovecii]
Length = 597
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 177/519 (34%), Positives = 265/519 (51%), Gaps = 23/519 (4%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
TSV GH++ +F + W+ +PL LF + L E+K E L +
Sbjct: 69 FTSVRGHLLEWEFEETFRKWNTCNPLSLFEAKIITTINKEMKSIHENLLKESKYAEGLYI 128
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I E++ VR N + RA F+ + I A + +
Sbjct: 129 WTDCDREGEYIAAEIVNIVREA---NPKIEIKRAHFNNLEKTHILKAAHQPFNIDQKQVN 185
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V AR E DLRIG AFTR+QT Q + L ++SYG CQ PTLGF V+R +I F
Sbjct: 186 AVAARIEFDLRIGSAFTRFQTLSLQN-FEPLAKEIVSYGSCQFPTLGFVVDRWKRIENFV 244
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE +W + + + S W R +FD+ + + ++ V V +V K + K
Sbjct: 245 PEKFW--SIKIYFHNYQTSFNWKRIRLFDRLSVFLIYENCLLFDKVKVKNVLQKPKRR-K 301
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TVEL + LG+ M+IAE LYT+G++SYPRTET Q+ ++ DL +++R+Q
Sbjct: 302 PYPLTTVELQKQGVKYLGLSSKDIMKIAETLYTKGFISYPRTETDQFSDDIDLHSLIRKQ 361
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDG-DAWRLYDYIVRH 410
+ WG + + +L+ S PRKGK D HPPI P + L D +++Y +IVRH
Sbjct: 362 INDEQWGSYAQSLLNGKFSHPRKGKNDDKAHPPIHPIAYVKKNTLRSVDEYKVYSFIVRH 421
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES-IPDFKPGDL 469
F+ + + Q +E F+ +L + + + + + +P F G++
Sbjct: 422 FLASCSQNAQGKQTTVIVQWGNEFFSTSGLVVLEKNYLDIYLYEKWNSSTCLPIFNEGEV 481
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV-----TVT 524
I +M E KT PP +LTESELI+LM +GIGTD++I HI I R YV +
Sbjct: 482 IAFDYSEMSEGKTEPPAHLTESELINLMNINGIGTDSTIAEHIQKIIDRKYVFRQLKNIK 541
Query: 525 SGR------RLVPTSLGIVLVHGYQKI--DRELVEPTMR 555
+ + VP++LGI LV GY KI ++ L +P +R
Sbjct: 542 NHKNRDKIYEFVPSTLGIALVDGYDKIGFNQSLTKPFLR 580
>gi|302658516|ref|XP_003020961.1| hypothetical protein TRV_04955 [Trichophyton verrucosum HKI 0517]
gi|291184833|gb|EFE40343.1| hypothetical protein TRV_04955 [Trichophyton verrucosum HKI 0517]
Length = 573
Score = 294 bits (752), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 175/571 (30%), Positives = 277/571 (48%), Gaps = 63/571 (11%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH++G +F +Y +W DP LF P E ++ + + A+ + L +
Sbjct: 1 MTSVLGHLLGHEFEPRYKSWTSCDPSALFDAPIEVFVSSDGEPVADNIKRHARRADVLFI 60
Query: 113 WLDCDKEGENICFEVME-AVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I E+ A + + RARFS I I A V + +A
Sbjct: 61 WTDCDREGEHIGTEIRSVAAQSNQALGRAGGTVRARFSNIERTHIIHAAHRPVNLDEAQA 120
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQG--KYGDLD--ASLISYGPCQTPTLGFCVERHDK 227
+V +R ELDLR+G +FTR+ T + + G+L + LISYG CQ PTLGF VER+ +
Sbjct: 121 DAVASRIELDLRVGASFTRHLTLSLRPLLQRGNLSEASQLISYGSCQFPTLGFIVERYWR 180
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
+R F PEP+W + L G V+ +W+R H+FD+ T + ++ ++ V V+++
Sbjct: 181 VRNFIPEPFWSIKLMHQKAGTWVNFSWARNHLFDRRTAVILYERCLTSQNARVQKVKTTP 240
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
SK KP L T+EL + S LGM +Q+AE+LY +G++SYPRTET Q+ + DL
Sbjct: 241 TSKWKPLPLTTLELQKCGSRFLGMDSQKVLQLAEKLYQKGWISYPRTETDQFDQGMDLRG 300
Query: 348 VLRQQESSPDWGDHVREVL--SNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLY 404
++++Q W D+ ++ G S PR G + HPPI P L + R++
Sbjct: 301 LVQKQAQGGRWADYATALVEGGGGFSWPRNGHNNDKAHPPIHPVNFVNPATLSLEEQRVH 360
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
+++VR F+ D ++ E F +L + V + N+ +P F
Sbjct: 361 EFVVRRFLACCSKDAQGSKTDISILYGPETFHASGLVILERNYLDVYVYDRWSNQELPPF 420
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV--- 521
G++ + E KT+PP YLTE +L++LM +GIGTD+++ HI I R YV
Sbjct: 421 IEGEVFEPTEAMLSEGKTSPPGYLTEPDLLALMNANGIGTDSTMADHIVTIIDRQYVEAR 480
Query: 522 --------------------------------------------------TVTSGRRLVP 531
+T R +P
Sbjct: 481 AQPRQARHGHDEEEESEELPTQARGGNCRRGRTAVASRRGGRNSGAGRGGAITGVREFIP 540
Query: 532 TSLGIVLVHGYQKI--DRELVEPTMRSAYRV 560
T+LG+ LV G++ + + +L++P +R R+
Sbjct: 541 TTLGVALVEGHENMGFETDLMKPFLRKEVRL 571
>gi|254565565|ref|XP_002489893.1| DNA Topoisomerase III, conserved protein that functions in a
complex with Sgs1p and Rmi1p [Komagataella pastoris
GS115]
gi|238029689|emb|CAY67612.1| DNA Topoisomerase III, conserved protein that functions in a
complex with Sgs1p and Rmi1p [Komagataella pastoris
GS115]
gi|328350304|emb|CCA36704.1| DNA topoisomerase III [Komagataella pastoris CBS 7435]
Length = 628
Score = 294 bits (752), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 175/524 (33%), Positives = 274/524 (52%), Gaps = 24/524 (4%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELF-SCPTEKREATPKLKLPAFLANEAKDCEFLV 111
MTSV GH+ + + W K P+ LF S K KL +ANEA+ L+
Sbjct: 54 MTSVLGHLTEMTIDNNRYGWGKCLPINLFDSTIIVKENGNDSKKLVQNIANEARLSNQLM 113
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
+W DCD+EGE+I +E++ A + + + VWRA+FS + I +A N + + +
Sbjct: 114 IWTDCDREGEHIGWEILNAASKTNSSLTLENVWRAQFSHLERSHIISAAKNPKQLDRYAI 173
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDL--DASLISYGPCQTPTLGFCVERHDKIR 229
+V R ELDLR G +FTR+ T F+ + ++ + LISYG CQ PTLGF V+R+ +++
Sbjct: 174 DAVCTRMELDLRAGFSFTRFLTDLFKTNFQEIKEERRLISYGGCQFPTLGFVVDRYMRVK 233
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKA---VEKEKHVTVVDVQSS 286
F PE +W + + + + ++WSR H+FD+ + ++ + K++ +V + S
Sbjct: 234 EFVPEEFWYISIEVKKGNRKLPMSWSRPHLFDRLAAMLLYENSLDIAKDE-AEIVHIISK 292
Query: 287 TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLV 346
S KP L TV+L + S + + AE+LY QG++SYPRTET ++ DL
Sbjct: 293 PTSNFKPLPLTTVQLQKDCSKFFKLSAKETLDAAEKLYNQGFISYPRTETDRFDPKTDLK 352
Query: 347 AVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRL-Y 404
+L +Q SP WG +V+E+L + PR GK D HPPI P T+L +L Y
Sbjct: 353 NLLSKQAESPQWGGYVQELLDGKMRSPRAGKHDDKAHPPIHPICYTDFTKLKSRNEQLVY 412
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV---MTWSAMKNESI 461
Y+ + FI D + + E FT +L + + W++ K +
Sbjct: 413 QYVTKRFIACCSDDAKGVKSIVTAKWGLETFTASGLMVLEKNYLDIYDYFKWTSTK--EL 470
Query: 462 PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
P+F G+ + + +V KT+PP Y++ESELI+LM+ +GIGTDA+I HI I R Y
Sbjct: 471 PEFTLGEKVKLLKADLVTGKTSPPSYMSESELIALMDINGIGTDATIAEHIEKILAREYA 530
Query: 522 TVTS-------GRRLVPTSLGIVLVHGYQKI---DRELVEPTMR 555
+ S ++PT LG LV G+ +I + L +P +R
Sbjct: 531 SKQSLGESRSKKAYILPTELGCALVEGFNQIGFDNLSLSKPFLR 574
>gi|401624635|gb|EJS42690.1| top3p [Saccharomyces arboricola H-6]
Length = 655
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 192/540 (35%), Positives = 282/540 (52%), Gaps = 48/540 (8%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ G+DF+ + W K ELF P + + K+ + + EAK+ ++L++
Sbjct: 58 MTSVAGHLTGIDFSHEAYGWGKCAIQELFDAPLNEIMNNNQKKIASNIKREAKNADYLMI 117
Query: 113 WLDCDKEGENICFEV-MEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE I +E+ EA R I + V+RA FS + + I A N PN +
Sbjct: 118 WTDCDREGEYIGWEIWQEAKRGNRRIQDSQ-VYRAVFSHLERQHILNAARN---PNRLDM 173
Query: 172 RSVDA---RQELDLRIGCAFTRYQTKFFQGKY----------------GDLDASLISYGP 212
+SV+A R E+DLR G FTR T+ + K D+ ++SYG
Sbjct: 174 KSVNAVGTRIEIDLRAGVTFTRLLTETLRNKLRGQSATTKDGGRPRGGSKSDSQVVSYGT 233
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNL--NGVAVSVTWSRGHIFDK-STCNVFF 269
CQ PTLGF V+R ++IR F E +W + LT++ NG + W RGH+FD+ S ++
Sbjct: 234 CQFPTLGFVVDRFERIRNFIAEEFWYIQLTVDNKDNGGTTTFQWDRGHLFDRLSVLTIYE 293
Query: 270 KAVEKEKHVT-VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGY 328
+E +V VVD++S SK +P L TVEL + + L + ++ AE+LY +G+
Sbjct: 294 TCIETAGNVAKVVDLKSKPTSKYRPLPLTTVELQKNCARYLRLNAKQSLDAAEKLYQKGF 353
Query: 329 VSYPRTETTQYPENFDLVAVLRQQ----ESSP----DWGDHVREVL------SNGISKPR 374
+SYPRTET +P+ DL A++ +Q +SSP W + +L +N + R
Sbjct: 354 ISYPRTETDTFPQAMDLKALVEKQAQLDQSSPAGKTAWASYAASLLTPESTSTNKFNFSR 413
Query: 375 KGK-DVGDHPPITP-TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVAD 432
G D HPPI P T LA + R+Y+Y+ RHF+ D A
Sbjct: 414 SGSHDDKAHPPIHPITSLAPDANVSPVERRVYEYVARHFLACCSEDAKGLSTTLTLDWAT 473
Query: 433 EMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTES 491
E FT +L F V W+ + + +P + L+ I +M T PP +TES
Sbjct: 474 ERFTPSGLVVLERNFLDVYPWARWETTKQLPRLEINTLVDIAKAEMKTGSTAPPKPMTES 533
Query: 492 ELISLMEKHGIGTDASIPVHINNICQRNYV-TVTSGRR--LVPTSLGIVLVHGYQKIDRE 548
ELI LM+ +GIGTDA+I HI+ I RNYV T +G+ L PT+LG+ LVHG++ I E
Sbjct: 534 ELILLMDANGIGTDATIAEHIDKIQVRNYVRTEKAGKETYLQPTTLGVSLVHGFEAIGLE 593
>gi|398024578|ref|XP_003865450.1| DNA topoisomerase III, putative [Leishmania donovani]
gi|322503687|emb|CBZ38773.1| DNA topoisomerase III, putative [Leishmania donovani]
Length = 947
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 186/518 (35%), Positives = 277/518 (53%), Gaps = 28/518 (5%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+M F NW LF P K + L A + LVL
Sbjct: 50 VTSVAGHLMEDQFPPNTKNWSTYPFQGLFLAPITKYVRADLEPVKKNLEALAGRADTLVL 109
Query: 113 WLDCDKEGENICFEVMEAV---RHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
WLDCD+EGENICFEVM+ V R Q+ + RA FSA+T +D+ A+ NL P+
Sbjct: 110 WLDCDREGENICFEVMQVVQSKRPQVQVK------RAHFSALTARDLLNAVHNLKLPDKR 163
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
+ +V+ARQE+DLRIG AFTRYQT F+ + + ++S+GPCQ PTLGF V R+ + +
Sbjct: 164 LSDAVEARQEMDLRIGAAFTRYQTVKFRHLFAAIPG-VLSFGPCQFPTLGFVVRRYWQQQ 222
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFF----KAVEKEKHV-TVVDVQ 284
F PE ++ TL L SRG ++D+ + + +A E H + +VQ
Sbjct: 223 GFVPEDFF----TLQLQHGDTKFHSSRGSMYDQVAATLIYEDMLQAAAAEGHKGRITNVQ 278
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP-ENF 343
+ P L TV + ++A++ L + M +AE LY +G +SYPRTET Y +
Sbjct: 279 QRPSHRRPPVPLATVVMQKLAATHLRIPSERCMTLAESLYQEGLISYPRTETDSYTFQES 338
Query: 344 DLVAVLRQQESSPDWGDHVREVLSNGISKPR----KGKDVGDHPPITPTKLATRTQLDGD 399
+L+ ++R Q ++ D ++V +L++ ++ R G D HPPI PTK TQ +
Sbjct: 339 ELLELVRVQIANADVAEYVAAMLADIATRVRPPLRGGHDDKAHPPIHPTKAWNATQ--DE 396
Query: 400 AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
RLY+ IVRHF+ +L D V E+F+ +L G+ + + N
Sbjct: 397 RGRLYNLIVRHFLASLSPDAVAATTQVSAEFGGELFSTGGTTILQRGWLDIFPYERWNNT 456
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
IP+++ GD +V + + T+ P +LTE+ LISLM+ +GIGTDA+I HI + R
Sbjct: 457 CIPNYQIGDTFQPTAVPLKKGCTSAPPHLTETHLISLMDSNGIGTDATIAQHIKTVLDRE 516
Query: 520 YVTVTSGRRLVPTSLGIVLVHGYQKID-RELVEPTMRS 556
YV G+ LVPT+LGI L Y+ + L++P +R+
Sbjct: 517 YVK-REGQSLVPTTLGIALASAYESLGLASLLQPQLRA 553
>gi|169806308|ref|XP_001827899.1| DNA topoisomerase III [Enterocytozoon bieneusi H348]
gi|161779347|gb|EDQ31370.1| DNA topoisomerase III [Enterocytozoon bieneusi H348]
Length = 722
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 184/545 (33%), Positives = 286/545 (52%), Gaps = 46/545 (8%)
Query: 32 NGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREAT 91
N C H+++ + ++F TSV GH+ +F S+Y NW+ ++P LF+ K+ T
Sbjct: 31 NKYCLNHKFIFK--NNNMIF--TSVLGHMYEFEFPSEYKNWNTINPKNLFTAKIYKKLKT 86
Query: 92 PKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAI 151
+ + + + + + + +V+W DCD+EGENI ++ V + K V RARFSAI
Sbjct: 87 ESIYIKKNIEDLSINADLVVIWTDCDREGENIGKQIQSLVYN-------KKVKRARFSAI 139
Query: 152 TDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGK--YGDLDA-SLI 208
+ +I A NL N +E+ +V+ARQE+DLRIGCAFT QT Q + L A +I
Sbjct: 140 SKHEILKAFDNLCDINQYESDAVEARQEIDLRIGCAFTVLQTLALQKTLFFNSLSAHKII 199
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVF 268
SYG CQ PTL F V+RH +I +F PE ++ + + N W+RGHIFDK+ C +
Sbjct: 200 SYGQCQIPTLNFVVQRHKEIVSFIPEKFYSISIINKSN----EFLWNRGHIFDKN-CVLH 254
Query: 269 FKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGY 328
F + V D+ K K KP L TVEL +V ++ + H M IAE+LY QGY
Sbjct: 255 FYNQLISANFIVTDIIRENKVKYKPLPLRTVELQKVCTTYYKISSHEIMDIAEKLYNQGY 314
Query: 329 VSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITP 387
+SYPRTET +P NFD ++ + + + +++ + + PR G + H PI P
Sbjct: 315 ISYPRTETDVFPNNFDFNRIIGKLRNDIQFKEYLEKF---TLKFPRNGNNNDQAHSPIYP 371
Query: 388 TKLATRTQLDGDAWRLYDYIVRHFIGTLCGD--------------LVYTQKVAKFSVADE 433
L L +YD+I R FI C D + + + + ++ E
Sbjct: 372 --LKDGNMLKDKERNIYDFIARRFIAC-CDDNAKGVEVVIKIRPFVPKSSNILQKNIEQE 428
Query: 434 MFTMEAKYLLHPGFTGVM---TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTE 490
F + +L + + W+A E I + D+I ++++ + TT P+YLTE
Sbjct: 429 NFYCKGLIILERNYLNIYFYDKWNA--KEIIGKYNVNDIIQEANIEIKDGMTTCPEYLTE 486
Query: 491 SELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELV 550
+LI+LM+K+ IGTDA+I HI I RNY + + + PT +GI L++ Y ++ L
Sbjct: 487 KDLITLMDKNEIGTDATIHEHIEKIQIRNY-AIKQKQYIKPTIVGINLINAYSQLKLPLS 545
Query: 551 EPTMR 555
E ++R
Sbjct: 546 ECSIR 550
>gi|452846702|gb|EME48634.1| hypothetical protein DOTSEDRAFT_67618 [Dothistroma septosporum
NZE10]
Length = 675
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 167/473 (35%), Positives = 249/473 (52%), Gaps = 7/473 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+M DF S++ W DP LF E + + A+ ++L +
Sbjct: 58 MTSVTGHMMASDFDSQHRGWYSCDPSALFDARIETFVKDQSKAIAKNIETRARYAQYLYI 117
Query: 113 WLDCDKEGENICFEVMEAV-RHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGENI E+ +A + + ++ P RARFS I + A N V + +A
Sbjct: 118 WTDCDREGENIGVEIRDAAAKIKPDLKQPGRTVRARFSNIERAHVINAARNPVPLDEAQA 177
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V AR E+DLRIG FTR + Q + ISYG CQ PTLGF VER+ ++R F
Sbjct: 178 NAVFARMEIDLRIGACFTRNLSFTVQPVIHKQET--ISYGSCQFPTLGFVVERYLRVRNF 235
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
PE +W + + +G+ V+ WSR H+FD+ + F+ + V VQ+ SK
Sbjct: 236 VPETFWGIKVMHQKDGIKVNFKWSRNHLFDRMVVVILFERCLTARTARVTKVQTKPTSKW 295
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
KP L TVEL + S L M M +AE+LY G++SYPRTET QY +L A++++
Sbjct: 296 KPLPLTTVELQKCGSRFLRMDSQTVMTVAEKLYQSGWISYPRTETDQYDRGMNLQALVQK 355
Query: 352 QESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVRH 410
Q WG + + + G S PR G++ HPPI P T L+ R+Y+++VR
Sbjct: 356 QTQGQAWGLFAQGLANGGFSWPRTGRNNDKAHPPIHPVNFVAPTALNQQEQRVYEFVVRR 415
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSA-MKNESIPDFKPGD- 468
F+ D ++ E F+ +L + V + + +P F+ G+
Sbjct: 416 FLACCSEDARGSKTDISILYGSETFSGSGLTVLQRNYLDVYPYDKWTSTQELPHFEEGET 475
Query: 469 LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
+P +++ + E +T+PP YLTE ELI+LM+ +GIGTDA++ HI I +R YV
Sbjct: 476 FVPTEAL-LHEGQTSPPGYLTEPELIALMDTNGIGTDATMAEHIAKIKEREYV 527
>gi|424513003|emb|CCO66587.1| predicted protein [Bathycoccus prasinos]
Length = 751
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 191/589 (32%), Positives = 294/589 (49%), Gaps = 99/589 (16%)
Query: 52 KMTSVCGHIMGLDFTS-KYNNWDKVDPLELFS-------CPTEKREATPKLKLPAFLANE 103
K TSV GH+M DFT +Y +W+ D +LF P +K+E L+ E
Sbjct: 94 KFTSVTGHLMNYDFTEHEYKSWEHSDARDLFGRARIAKLVPDDKKEVKVNLE------RE 147
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
A+ E+L+LWLDCD+EGENI EV++ +N N V+RARFSA++ +D+ A+ NL
Sbjct: 148 ARTSEWLILWLDCDREGENIAMEVVDVC---LNANRRLKVFRARFSALSYQDVSRALMNL 204
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL-------------------- 203
+P+ + +VDARQELDLR+G AFTR+ T + + G L
Sbjct: 205 QRPDEAASIAVDARQELDLRLGAAFTRFNTLCVK-RNGVLALLGENGGGGGERGGGRGND 263
Query: 204 --DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNL---------------- 245
+ ++ISYGPCQ PTLGF V+R + PE +W + + +
Sbjct: 264 RDNKTVISYGPCQFPTLGFIVQRKWDVDAHVPEKFWTISIGYQMVEGGQQQQQQQQQQRQ 323
Query: 246 ----------NGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQA 295
G V W+R +FD+ N F+ V+ H TV+ + K P
Sbjct: 324 QRQRRGGGGGGGRVVEFRWNRQRVFDEHLANSLFERVQNAPHATVLSTRGQEIKKWPPHP 383
Query: 296 LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESS 355
LNT+E+ + + L + P M++AE LY +G++SYPRTET ++P++F+ + + +
Sbjct: 384 LNTLEMQKRVNRVLRIAPEKIMKVAEELYQKGFISYPRTETDRFPDSFNFLENIALFYNH 443
Query: 356 PDWGDHVREVLS-NGISKPRKG-KDVGDHPPITPTKLATRTQLDG---DAWRLYDYIVRH 410
+G + RE++ +G KP G +D HPPI P KLAT + +G + ++YD+++RH
Sbjct: 444 DTFGPYARELVERDGFRKPPGGHRDDKAHPPIYPAKLATAHEYNGWKRENQQVYDFVLRH 503
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEA------KYL---------------LHPGFTG 449
F+ T V + + A E F YL L+P F
Sbjct: 504 FLATCSKPAVGYKTTVEVDCAGEGFKANGLMIADRAYLRIYGPGPIFPPDGPRLNPYFD- 562
Query: 450 VMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
W+A E +P F+ G+ + + +T P L+E +L++LMEK+GIGTDA+
Sbjct: 563 --NWTAQ--EELPTFEDGERFQPSHRNLRDSETVKPQMLSEVDLLTLMEKNGIGTDATQA 618
Query: 510 VHINNIC-QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELV-EPTMRS 556
HI+ + +R Y RLVPT++G LV GY + + +PT R+
Sbjct: 619 QHIDKVVGERGYAKKVGENRLVPTNIGEALVAGYDSLQLGFMWQPTKRA 667
>gi|452989907|gb|EME89662.1| hypothetical protein MYCFIDRAFT_193524 [Pseudocercospora fijiensis
CIRAD86]
Length = 773
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 168/483 (34%), Positives = 254/483 (52%), Gaps = 8/483 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+M DF +Y W+ DP LF E A K + + +A+ +L +
Sbjct: 158 MTSVLGHLMMHDFERRYKGWNSCDPGVLFEAQIETFVAEDKKPVADNIERQARGVRYLYI 217
Query: 113 WLDCDKEGENICFEVME-AVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGENI E+ A++ +++ + V RARFS I + + A + +A
Sbjct: 218 WTDCDREGENIGAEIRSCALKTNPGLSNGRIV-RARFSNIEKQHVLNAARRPGTLDDAQA 276
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDL--DASLISYGPCQTPTLGFCVERHDKIR 229
+V AR ELDLRIG +FTR + Q G S+ISYGPCQ PTLGF VER+ +++
Sbjct: 277 NAVYARMELDLRIGASFTRKLSIGLQEMLGREPGKGSVISYGPCQFPTLGFVVERYFRVQ 336
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKS 289
F PEP+W + + +GV V W+R H+F++ + F+ + V VQ+ S
Sbjct: 337 NFVPEPFWGIKVMHEKDGVKVKFNWARQHLFNRMIVVILFERCLHARLARVTKVQTKPTS 396
Query: 290 KTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL 349
K +P L TVEL + S L + M IAE LY +G++SYPRTET Q+ +L A++
Sbjct: 397 KWRPLPLTTVELQKCGSRFLRLNSQTVMNIAEGLYQRGFISYPRTETDQFDRGMNLQAIV 456
Query: 350 RQQESS-PDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYI 407
++Q + W + + +++ G +PR G + HPPI P A + L D R+Y+++
Sbjct: 457 QKQANGQAAWSQYAQHLMNGGFVQPRNGNHNDKAHPPIHPVNFAAASVLSSDERRVYEFV 516
Query: 408 VRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSA-MKNESIPDFKP 466
R F+ D ++ E F +L + V + ++ +PDF+
Sbjct: 517 CRRFLACCSDDAKGSKTEISILYGSETFNASGLTVLRRNYLDVYPYDKWTSSQELPDFRE 576
Query: 467 GDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV-TVTS 525
G+ + E +T+ P YLTE ELI+LM+ +GIGTDA++ HI I R YV T
Sbjct: 577 GETFEPTEANIHEGQTSAPGYLTEPELIALMDANGIGTDATMAEHIATIKTREYVMTRPR 636
Query: 526 GRR 528
GR+
Sbjct: 637 GRQ 639
>gi|258568124|ref|XP_002584806.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237906252|gb|EEP80653.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 587
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 174/523 (33%), Positives = 260/523 (49%), Gaps = 45/523 (8%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLA 101
GP +G+ + MTSV GH+ LDF S++ +W P +LF P + L + +
Sbjct: 48 GPPWGNSSV-TMTSVIGHLTALDFESQWRHWQSCPPGQLFDAPVAEDVDKDNLGIAENIR 106
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVM-EAVRHQININSPKTVWRARFSAITDKDIKAAM 160
N+A+ + L +W DCD+EGE+I EV +AVR ++
Sbjct: 107 NKARQADVLFIWTDCDREGEHIGSEVRNQAVRVLLDER---------------------- 144
Query: 161 WNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISY--GPCQTPTL 218
+A +V AR ELDLRIG AFTR T G L LISY G CQ PTL
Sbjct: 145 ---------QAHAVAARIELDLRIGAAFTRLLTLQLGALGGALAERLISYALGSCQFPTL 195
Query: 219 GFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHV 278
GF V+R+ +++ FKPEP+W + ++ + V+ WSRGH+FD++ V F+ K
Sbjct: 196 GFVVDRYFRVKNFKPEPFWSIKVSHTRDRKTVNFNWSRGHLFDRAAVVVLFERCLAAKTA 255
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQ 338
V V K +P L TV+L + + L M M++AE LYT+G++SYPRTET Q
Sbjct: 256 KVTRVNKKPTKKWRPLPLTTVDLQMMGTKFLRMDSQKVMKVAESLYTKGFISYPRTETDQ 315
Query: 339 YPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLD 397
+ + DL ++ +Q WG + + ++ +PR G+ + HPPI P + L
Sbjct: 316 FDKGIDLKKLVEKQVQDGAWGPYAQGLMDGAFKQPRSGRHNDKAHPPIHPVTYVASSVLT 375
Query: 398 GDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK 457
D R+Y+++VR F+ D DE F + +L + V + +
Sbjct: 376 ADERRVYEFVVRRFLACCSEDAKGETTEVDIQYGDEKFHAQGLVVLERNYLDVYVYDKWE 435
Query: 458 -NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
++ +P F G+ + + E KT P+YLTE ELI LM+ +GIGTDA++ HI I
Sbjct: 436 SSQELPKFTVGEEFEPKEAIINEGKTVAPNYLTEPELIGLMDANGIGTDATMADHIAKIK 495
Query: 517 QRNYVTVT----SGR----RLVPTSLGIVLVHGYQKIDRELVE 551
+R Y SGR +PT LG+ LV GY + +L +
Sbjct: 496 EREYAATRRRGGSGRNSVDEFIPTKLGVALVEGYDDLVLDLAD 538
>gi|194388180|dbj|BAG65474.1| unnamed protein product [Homo sapiens]
Length = 282
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 138/238 (57%), Positives = 166/238 (69%), Gaps = 1/238 (0%)
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 1 MFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQ 60
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D GDHPPIT
Sbjct: 61 GYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPIT 120
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E+FT K +L PG
Sbjct: 121 PMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPG 180
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIG 503
FT VM W ++ ES+P + GD P+ VKM+E++T PPDYLTE ELI+LMEKHGIG
Sbjct: 181 FTEVMPWQSVPLEESLPTCQRGDAFPVGEVKMLEKQTNPPDYLTEVELITLMEKHGIG 238
>gi|239608653|gb|EEQ85640.1| DNA topoisomerase III [Ajellomyces dermatitidis ER-3]
Length = 674
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 174/563 (30%), Positives = 268/563 (47%), Gaps = 60/563 (10%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH++ +F +Y +W DP LF E + + + A+ L +
Sbjct: 57 MTSVLGHLLSHEFEPRYKSWTSCDPSALFDARIEVFVGSNSEPIADNIKRHARRAGVLFI 116
Query: 113 WLDCDKEGENICFEVME-AVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I E+ A + + RA FS I I A + +A
Sbjct: 117 WTDCDREGEHIGTEIRSVAAQSNQALGRAGGTVRAHFSNIERTHIIHAAHRPADLDEAQA 176
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQG--KYGDLD--ASLISYGPCQTPTLGFCVERHDK 227
+V +R ELDLR+G +FTR+ T + + G+L + LISYG CQ PTLGF VER+ +
Sbjct: 177 NAVASRIELDLRVGASFTRHLTLSLRPVLQRGNLSEASQLISYGSCQFPTLGFIVERYWR 236
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
+R F PEP+W + L G V+ +W+R H+FD+ T + ++ ++ V V+++
Sbjct: 237 VRNFIPEPFWSIKLMHRKAGTRVNFSWARKHLFDRRTAVILYERCLTSQNAQVQKVKTTP 296
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
SK KP L T+EL + S GM +Q+AE+LY +G++SYPRTET Q+ DL
Sbjct: 297 TSKWKPLPLTTLELQKCGSRFFGMDSQKVLQLAEKLYQKGWISYPRTETDQFDRGMDLRG 356
Query: 348 VLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDY 406
++++Q W D+ ++ G S PR G D HPPI P T L + R++++
Sbjct: 357 LVQKQAQGGRWADYATALVEGGFSWPRNGHNDDKAHPPIHPVNFVNPTTLSHEEQRVHEF 416
Query: 407 IVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKP 466
+VRHF+ D ++ E F +L + V + N+ +P F
Sbjct: 417 VVRHFLACCSKDAQGSKTDIIILYGPETFHASGLVILERNYLDVYVYDRWSNQELPPFIK 476
Query: 467 GDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV----- 521
G++ + E KT+PP YLTE +L++LM +GIGTDA++ HI I R YV
Sbjct: 477 GEVFEPTEAILSEGKTSPPGYLTEPDLLALMNANGIGTDATMADHIVTIIDRQYVEARAQ 536
Query: 522 -----------------------------------------------TVTSGRRLVPTSL 534
+T R +PT+L
Sbjct: 537 PRQARHGNDEEESEELPAQARGGNGRRGRTAVAPRRGGRNSGAGRGGAITGVREFIPTTL 596
Query: 535 GIVLVHGYQKIDRE--LVEPTMR 555
G+ LV G++ + E L++P +R
Sbjct: 597 GVALVEGHENMGFETNLMKPFLR 619
>gi|241953321|ref|XP_002419382.1| DNA topoisomerase III, putative [Candida dubliniensis CD36]
gi|223642722|emb|CAX42976.1| DNA topoisomerase III, putative [Candida dubliniensis CD36]
Length = 630
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 178/516 (34%), Positives = 273/516 (52%), Gaps = 15/516 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GHI L+F S + W K P LF + K + +A EA++ + L++
Sbjct: 55 MTSVVGHITNLEFESAFA-WGKCVPGRLFD--ADILTVITKKAVHENIAKEARNADKLMI 111
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I FE+M A + +WRA+FS + I A N V ++
Sbjct: 112 WTDCDREGEYIGFEIMNAAKKYNRNLELNNIWRAKFSHLERNHIIRAAKNPVNLDMSAVA 171
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI-SYGPCQTPTLGFCVERHDKIRTF 231
+V R E+D R+G +FTR T + K G +D + + SYG CQ PTLGF V+R+ +++ F
Sbjct: 172 AVSCRMEVDFRVGTSFTRLLTDQLRQK-GIIDGTQVASYGTCQFPTLGFVVDRYKRVKNF 230
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVD-VQSSTKSK 290
PEP+W +++ W RGH FDK + ++ K ++ ++S K
Sbjct: 231 IPEPFWHIEVETRKENKKTVFNWVRGHFFDKLYVVMLYEQCCKSGEYGIISKIESKRKPN 290
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
+P L TVEL + + M A++ AE+LY QG++SYPRTET ++ + D ++L
Sbjct: 291 FRPFPLTTVELQKDCARFFKMSAKAALEAAEKLYNQGFLSYPRTETDRFAKETDFRSLLE 350
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDG-DAWRLYDYIV 408
+ WG + E+LS G PR G D HPPI P K + L + ++Y+Y+V
Sbjct: 351 VHKQDSRWGSYTTELLSQGYQVPRSGSHDDKAHPPIHPIKYVSLDTLKSINEKKVYEYVV 410
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPG 467
R FI D V Q VA DE FT +L + V + + ++ +P F G
Sbjct: 411 RRFIACCSKDAVGMQTVATLKWGDEFFTANGLMVLEKNYLDVYIYKKWESSKQLPKFTEG 470
Query: 468 DLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGR 527
+ I + S + E KT+PP+++TE ELI+LM+ +GIGTDA+I HI+ I R Y+ +
Sbjct: 471 ERIKLASGVLKEGKTSPPNHMTEPELIALMDANGIGTDATIAEHIHKIENRGYIAKSKKG 530
Query: 528 R---LVPTSLGIVLVHGYQKIDRE---LVEPTMRSA 557
+ +VP+ LG+ L+ G K++ E L +P +R +
Sbjct: 531 KNEFIVPSLLGMGLIDGLDKMEFEDISLSKPFLRKS 566
>gi|303271853|ref|XP_003055288.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463262|gb|EEH60540.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 639
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 187/544 (34%), Positives = 269/544 (49%), Gaps = 49/544 (9%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELF-SCPTEKREATPKLKLPAFLANEAKDCEFLV 111
TSV GH+M LDFT W ++ EL P EK ++ K K L EA++ +L+
Sbjct: 56 FTSVTGHLMNLDFTGGARKWGGINARELIDGAPVEKMVSSGKEKTAENLRREARNAAWLI 115
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
LWLDCD+EGENI FEVM+ R + + RARFSA++ D+ A+ LV PN E+
Sbjct: 116 LWLDCDREGENIAFEVMDVCR---GVKPTLRILRARFSALSHNDVTRALNALVAPNENES 172
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKY------GDLDASLISYGPCQTPTLGFCVERH 225
++VD RQELDLR+G +FTR+ T Q ++ D +++SYGPCQ PTLGF V+R
Sbjct: 173 KAVDMRQELDLRLGASFTRFNTMLLQNRFRLPGANEDGRGAVVSYGPCQFPTLGFIVQRK 232
Query: 226 -DKIRTFKPEPYWLLDLTLNLNGV------AVSVTWSRGHIFDKSTCNVFFKAVEKEKHV 278
D+ R+ PY V A W+R +FD+ F V+ +
Sbjct: 233 WDQARS----PYTGGGGGGGAGAVNPDAGAAAEFAWARERLFDEGLARTLFGFVQTARIA 288
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQ 338
TV + K P LNT+E+ + + + P M++AE LY G++SYPRTET
Sbjct: 289 TVTNEGGRETKKWPPVPLNTIEMQKRVNRACRISPAEVMKVAEELYNAGFISYPRTETDA 348
Query: 339 YPENFDLVAVLRQQESSPDWGDHVREVL--SNGISKP-RKGKDVGDHPPITPTKLATRTQ 395
+P++FD ++ + +G H R + SN P G D HPPI PTKLA T+
Sbjct: 349 FPKDFDFAGIIGPLTNHHVFGFHARALSAPSNRFRFPGNGGHDDNAHPPIYPTKLA--TE 406
Query: 396 LDGDAWR---------LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTM------EAK 440
D DAWR +YD++ RHF+ T + + + + E F E
Sbjct: 407 RDYDAWRRDGKMNQIKIYDFVARHFLATCSLPAIAHKTTVEIEIGGEAFKATGVMIKEMN 466
Query: 441 YLLHPGFTGV------MTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
YL G V +++ N ++P + G + + T PP L+E++L+
Sbjct: 467 YLDVYGKGPVGGPRFDVSYDGWANNTLPTYAVGQRFEPTELSLAPGATQPPQLLSETDLL 526
Query: 495 SLMEKHGIGTDASIPVHINNIC-QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRE-LVEP 552
ME H IGTDA+ HI + +R Y RL PT LG L GY ++ E + P
Sbjct: 527 QKMENHQIGTDATQAQHIEKVVGERGYAVKVGDNRLRPTELGEALCAGYYRMGLEDMWLP 586
Query: 553 TMRS 556
T R+
Sbjct: 587 TKRA 590
>gi|302497864|ref|XP_003010931.1| hypothetical protein ARB_02829 [Arthroderma benhamiae CBS 112371]
gi|291174477|gb|EFE30291.1| hypothetical protein ARB_02829 [Arthroderma benhamiae CBS 112371]
Length = 563
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 174/569 (30%), Positives = 275/569 (48%), Gaps = 69/569 (12%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH++ +F +Y +W DP LF P E ++ + + A+ + L +
Sbjct: 1 MTSVLGHLLSHEFEPRYKSWTSCDPSALFDAPIEVFVSSDSQPVADNIKRHARRADVLFI 60
Query: 113 WLDCDKEGENICFEVME-AVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I E+ A + + RARFS I I A V + +A
Sbjct: 61 WTDCDREGEHIGTEIRSVAAQSNQALGRAGGTVRARFSNIERTHIIHAAHRPVNLDEAQA 120
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQG--KYGDLD--ASLISYGPCQTPTLGFCVERHDK 227
+V +R ELDLR+G +FTR+ T + + G+L + LISYG CQ PTLGF VER+ +
Sbjct: 121 DAVASRIELDLRVGASFTRHLTLSLRPILQRGNLSEASQLISYGSCQFPTLGFVVERYWR 180
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
+R F PEP+W + L G V+ +W+R H+FD+ T + ++ ++ V V++S
Sbjct: 181 VRNFIPEPFWSIKLMHQKAGTWVNFSWARNHLFDRRTAVILYERCLASQNAQVQKVKTSP 240
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
SK KP L T+EL + S LGM +Q+AE+LY +G++SYPRTET Q+ + DL
Sbjct: 241 ASKWKPLPLTTLELQKCGSRFLGMDSQKVLQLAEKLYQKGWISYPRTETDQFDQGMDLRG 300
Query: 348 VLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDY 406
++++Q W D+ ++ G S P G + HPPI P + + R++++
Sbjct: 301 LVQKQTQGGRWADYATALVGGGFSWPHNGHNNDKAHPPIHPVNFSKQ--------RVHEF 352
Query: 407 IVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKP 466
+VR F+ D ++ E F +L + V + N+ +P F
Sbjct: 353 VVRRFLACCSKDAQGSKTDISVLYGPETFHASGLVILERNYLDVYIYDRWSNQELPPFIE 412
Query: 467 GDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV----- 521
G++ + E KT+ P YLTE +L++LM +GIGTDA++ HI I R YV
Sbjct: 413 GEVFEPTEAMLSEGKTSSPGYLTEPDLLALMNANGIGTDATMADHIVTIIDRQYVEARAQ 472
Query: 522 ------------------------------------------------TVTSGRRLVPTS 533
T+T R +PT+
Sbjct: 473 PRQARHGNDEEEESEELPAQARGGNGRRGRTAIASRRGGRNSGAGRGSTITGVREFIPTT 532
Query: 534 LGIVLVHGYQKI--DRELVEPTMRSAYRV 560
LG+ LV G++ + + +L++P +R R+
Sbjct: 533 LGVALVEGHENMGFETDLMKPFLRKEVRL 561
>gi|303389042|ref|XP_003072754.1| DNA topoisomerase III [Encephalitozoon intestinalis ATCC 50506]
gi|303301896|gb|ADM11394.1| DNA topoisomerase III [Encephalitozoon intestinalis ATCC 50506]
Length = 622
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 169/453 (37%), Positives = 247/453 (54%), Gaps = 21/453 (4%)
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
+V+W DCD+EGENI ++ + V + V RARFS IT +DI+ A+ NL + N
Sbjct: 2 VVIWTDCDREGENIGRQIRDIVLGVKKVE----VKRARFSGITLRDIEGALGNLGEINEA 57
Query: 170 EARSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYGPCQTPTLGFCVERH 225
EA +V+ R ELDLRIG AFTR QT + Q K ++S+GPCQ PTLGF VER
Sbjct: 58 EAEAVEVRMELDLRIGSAFTRLQTLSLGRTIQEK------RVLSFGPCQVPTLGFVVERA 111
Query: 226 DKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS 285
+ +F PE +W L + TW RG +FDK+ F +++ E +V +
Sbjct: 112 RERESFVPEMFWTLMFKTKSKKLGDEFTWRRGSVFDKNCVICFHRSLSGE-SARIVLKEV 170
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDL 345
++K KP L TVEL + SS + H M+IAE LY +GY+SYPRTET + FD
Sbjct: 171 RERTKYKPLPLRTVELQKKCSSYFKLSGHKVMEIAEGLYNKGYISYPRTETDAFDRKFDF 230
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKLATRTQLDGDAWRLY 404
+L + G+H E L G PR G++ H PI P K T L G +Y
Sbjct: 231 KYILGKLCKDSKVGEHA-EKLIGGFDYPRNGRNNDMAHSPIYPLKEG--TGLSGKDRDIY 287
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
D+I R F+G + D + + + EMF ++ ++ + V + ++ + DF
Sbjct: 288 DFICRRFLGCISKDAKGLETRYELKIGSEMFDLKGIRVVEKNYLEVYYYDKWDDKEVSDF 347
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
+ G+++ + + E KTTPP+YLTE+ELISLM+K+GIGTDA+I HI I +R Y +
Sbjct: 348 QMGEMVS-GDLCISEGKTTPPNYLTEAELISLMDKNGIGTDATIHEHIQKIQERGY-AIK 405
Query: 525 SGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
G + P LG L+ GY++ + +P +R +
Sbjct: 406 VGEEIRPLELGAALIGGYERFGLNVGKPELRKS 438
>gi|347839519|emb|CCD54091.1| similar to DNA topoisomerase III [Botryotinia fuckeliana]
Length = 665
Score = 291 bits (744), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 170/473 (35%), Positives = 246/473 (52%), Gaps = 8/473 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELF-SCPTEKREATPKLKLPAFLANEAKDCEFLV 111
MTSV GH+ LD + W P ELF + + K + + +A+D + L
Sbjct: 57 MTSVSGHLTSLDVAPTHKGWTDPPPQELFFKARVIESVSEDKKDIAQNIEAQARDAKALF 116
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLVKPNIFE 170
+W DCD+EGE+I EV R Q +P+ + RARFS I + A N V + +
Sbjct: 117 IWTDCDREGEHIGGEV----RAQALKGNPRIEIKRARFSNIERAHVIQAAKNPVNLDQRQ 172
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
+V AR ELDLRIG AFTR+QT Q G L ++SYG CQ PTLGF V+R+ K++
Sbjct: 173 VDAVAARIELDLRIGYAFTRFQTTNLQKLGGPLAKKMLSYGSCQFPTLGFVVDRYFKVKN 232
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
F PEP+W + +T N + V W R +FD++ + F+ K V VQ SK
Sbjct: 233 FVPEPFWSIKVTHNRENMNVVFNWKRNRLFDRAVVIILFERCLAAKVAKVTKVQEKPTSK 292
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
KP L TVEL + AS L M AM AE LYT+G++SYPRTET ++ + +L A++
Sbjct: 293 WKPLPLTTVELQKAASRWLNMNSQVAMTAAESLYTKGFISYPRTETDRFDKGMNLRALVE 352
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVR 409
+Q WG + +++ G PR+G+ D HPPI P T L + R+Y+++VR
Sbjct: 353 KQVQDNRWGPFAQNLVNGGFHWPREGRNDDKAHPPIHPVTYVASTALRPEEARVYEFVVR 412
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE-SIPDFKPGD 468
F+ D + +E F +L + V + + S+P F G+
Sbjct: 413 RFLACCSEDAKGQATDVELEYGEETFHTHGLVVLAKNYLDVYVYERWNSSTSLPKFTLGE 472
Query: 469 LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
+ + KTT P +LTE +LI+LM+ +GIGTDA++ HI I +R YV
Sbjct: 473 RFEPDEAMITDGKTTAPGFLTEPDLIALMDANGIGTDATMAEHIAKIKEREYV 525
>gi|298674695|ref|YP_003726445.1| DNA topoisomerase [Methanohalobium evestigatum Z-7303]
gi|298287683|gb|ADI73649.1| DNA topoisomerase [Methanohalobium evestigatum Z-7303]
Length = 772
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 176/514 (34%), Positives = 269/514 (52%), Gaps = 18/514 (3%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
+++ + GHIM D+ +YNNW VDP L T + K ++ AKD + +
Sbjct: 45 WRIMGLSGHIMTYDYPQEYNNWKDVDPGVLID--TMPEQFITKQAFANAISRLAKDSDEI 102
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
+L D D+EGENI FE +++ ++ NSP + RARFS+++ +IK A N V+P++
Sbjct: 103 ILACDYDREGENIGFEA-KSIAEKV-CNSP--IKRARFSSLSTGEIKKAFQNPVEPDVNL 158
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
A S ARQ LDL++G AFTRY T Q K ++S GPCQTPT GF ER I+
Sbjct: 159 ANSAKARQILDLKMGVAFTRYITLSVQQKA--RTKGVLSIGPCQTPTCGFVYEREKAIKE 216
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
F+P +W ++ N + T G FDK + + + K V + +
Sbjct: 217 FEPRDFWKIEAVFTHNDIDFQGTHRTGKFFDKQKADAVYNKISDCKTGQVTNKKVKETKS 276
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
+ P LNT E ++ AS LG+ A++IAE+LY G+ SYPRTET +Y +FD + +
Sbjct: 277 SPPYPLNTNEFLKRASKFLGLNSDRALEIAEQLYLSGFTSYPRTETNKYANDFDFQSRVA 336
Query: 351 Q--QESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQL-----DGDAWR 402
+ +++ + V + +G + PR G KD DHPPI P K A + + D W
Sbjct: 337 ELTKKAHKELALEVFKNSEDGFN-PRNGTKDAQDHPPIHPIKSANKGDINNAVNDSKGWD 395
Query: 403 LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP 462
+YD IVRHF+ L V+ + + SV DE+F G+ V + A ++ +P
Sbjct: 396 VYDLIVRHFLANLMQPAVFEKTRIEISVNDEIFDATGTVKKESGWIWVYPFEAKNDKILP 455
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT 522
+ + + + I + +TTPP LTESEL++LM+K+GIGT A+ P HI +R Y
Sbjct: 456 EIEINEKLKINKITNTNSQTTPPKRLTESELLTLMDKNGIGTKATAPTHIETNKKRGYFE 515
Query: 523 VTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
T G+ + G L+ K +V+P +R+
Sbjct: 516 -TKGKSISILDTGFTLMDALDKSVPLIVKPEIRA 548
>gi|440636754|gb|ELR06673.1| hypothetical protein GMDG_00290 [Geomyces destructans 20631-21]
Length = 659
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 180/560 (32%), Positives = 268/560 (47%), Gaps = 59/560 (10%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ +DF ++ +W P +LF + K + + +A++ L +
Sbjct: 58 MTSVLGHLTEVDFGPEFKDWRYPPPRKLFDGRVHVKVHNDKAAIARNIETQARNARILFI 117
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK-PNIFEA 171
W DCD+EGE+I EV E + NS V RA+FS I + + N K P ++
Sbjct: 118 WTDCDREGEHIGNEVRE---QAVKGNSSIEVKRAKFSNIE----RVHVINAAKHPIDLDS 170
Query: 172 RSVDA---RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKI 228
R VDA R ELDLRIG AFTR+QT Q G L + ISYG CQ PTLGF V+R+ K+
Sbjct: 171 RQVDAVATRIELDLRIGFAFTRFQTLSLQSLGGPLGGAKISYGSCQFPTLGFVVDRYLKV 230
Query: 229 RTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTK 288
+ F PEP+W + +T + + + W+R +FD++ + F+ K V V VQ
Sbjct: 231 QNFVPEPFWSIKVTHTRDNIDATFHWNRNRLFDRAAVTILFERCLDAKVVKVTKVQQKPT 290
Query: 289 SKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAV 348
++ KP L TVEL ++AS L M AM++AE LY +G +SYPRTET + + +L ++
Sbjct: 291 NRWKPLPLTTVELQKMASRFLRMNSQTAMKVAEDLYNKGMISYPRTETDIFDKGMNLKSL 350
Query: 349 LRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYI 407
+ + WG + +++ G PR G+ D HPPI P A + D RLY+++
Sbjct: 351 VEKHTQDNRWGPFAQNLVNGGFHWPRAGRNDDKAHPPIHPIA-AYNADRNSDEGRLYEFV 409
Query: 408 VRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPG 467
VR F+ D + T + E F +L F V + +P F G
Sbjct: 410 VRRFLACCSEDAIGTATDIELQYGPEAFHAHGVIVLERNFLDVYPYENWTGNMLPKFTLG 469
Query: 468 DLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSG- 526
+ + + + KT P YLTE +LI+LM+ +GIGTDA++ HI I R YV S
Sbjct: 470 EQFEPKEATLTDGKTVSPGYLTEPDLIALMDANGIGTDATMAEHIAKIKDRGYVMTQSRG 529
Query: 527 -------------------------------------------RRLVPTSLGIVLVHGYQ 543
+PT+LG+ L+ GY
Sbjct: 530 DGNVTVREDGASARGRGAGRGRGRGRGRGGAAAAESGRSSGGVEEFIPTTLGVALIEGYD 589
Query: 544 KI--DRELVEPTMRSAYRVQ 561
I + +L +P +R +Q
Sbjct: 590 NIGFEEKLSKPFLRKELELQ 609
>gi|389632279|ref|XP_003713792.1| DNA topoisomerase III [Magnaporthe oryzae 70-15]
gi|351646125|gb|EHA53985.1| DNA topoisomerase III [Magnaporthe oryzae 70-15]
Length = 669
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 166/487 (34%), Positives = 256/487 (52%), Gaps = 12/487 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MT V GH+ + F + +W++ P LFS P + + K + + ++A+ L +
Sbjct: 56 MTCVTGHLTEVQFGPDFKDWNRPTPDHLFSAPLHTQVSNDKKAIAENIRHQAQYARALFI 115
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I E+ E R P V RARFS I I A N V + +
Sbjct: 116 WTDCDREGEHIGGEIREEARK----GKPGIEVKRARFSNIERAHILQAARNPVNLDDMQV 171
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V AR ELDLRIG AFTR+ T + G L ++SYG CQ PTLGF V+R+ +++ F
Sbjct: 172 AAVAARIELDLRIGYAFTRFLTINLRSLNGPLKDLVLSYGSCQFPTLGFVVDRYFRVKNF 231
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
PE +W + L++ +G + TW+RG +FD+++ + ++ + K TV+ VQ K
Sbjct: 232 VPETFWSIKLSIKKDGKTGNFTWTRGRLFDRASVVILYERCIEAKTATVIKVQEKPTRKW 291
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
KP L TVEL ++A+ + + M+IAE+LY +G++SYPRTET ++ + +L ++++
Sbjct: 292 KPLPLTTVELQKMATKFIRISGQQTMEIAEKLYQKGFISYPRTETDRFDKGMNLRTLVQK 351
Query: 352 QESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATR---TQLDGDAWRLYDYI 407
Q WG + ++ G +PR G+ D HPPI P AT +++ +A R+Y+ I
Sbjct: 352 QTQDGRWGPFAQGLVDGGFQQPRNGRHDDKAHPPIHPITYATGAALSEIGAEAGRVYELI 411
Query: 408 VRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES-IPDFKP 466
VR F+ D + E F ++ + V + N + +P
Sbjct: 412 VRRFLACCSEDAQGMATDIDVTYGPETFHAHGVVVIERNYLDVYPYENWNNSAELPRLTV 471
Query: 467 GDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS- 525
G+ I M E KT P YLTE++LI+LM+ +GIGTDA++ HI I R Y T
Sbjct: 472 GEQISPTEAMMTEGKTQAPSYLTEADLIALMDANGIGTDATMAEHIQTIQTRQYARTTEV 531
Query: 526 -GRRLVP 531
GR P
Sbjct: 532 PGRNAQP 538
>gi|308198103|ref|XP_001386841.2| DNA topoisomerase [Scheffersomyces stipitis CBS 6054]
gi|149388862|gb|EAZ62818.2| DNA topoisomerase [Scheffersomyces stipitis CBS 6054]
Length = 616
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 165/512 (32%), Positives = 266/512 (51%), Gaps = 12/512 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GHI +DF Y W + P LF E E K + ++NEA+ L++
Sbjct: 54 MTSVVGHITNMDFPPAYQ-WGRCVPGRLFD--VEVIEKVTKQDVFDNISNEARTASRLMI 110
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I FE+ +A + +WR++FS + I A + ++
Sbjct: 111 WTDCDREGEFIGFEIYKAAFKGNSAIQVGDIWRSQFSHLERSHIIDAASHPRSLDMNSVN 170
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V R E+D R+G +FTR T + L SYG CQ PTLGF V+R+ ++++F
Sbjct: 171 AVACRMEIDFRVGTSFTRLLTDCLKQNRIIEKGGLASYGTCQFPTLGFVVDRYKRVKSFI 230
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE +W + + + S W++G FD+ ++ + + T+ +V+S + +
Sbjct: 231 PEKFWYIAVDIRKQNQKSSFAWTKGRFFDRMFVTQLYQDCLQTEEGTITNVESKRTTNWR 290
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TVEL + + M A+ AERLY +G++SYPRTET +P D V+ +Q
Sbjct: 291 PLPLTTVELQKDCARFFRMSAKAALDAAERLYNKGFLSYPRTETDSFPATMDFAGVIAKQ 350
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTK-LATRTQLDGDAWRLYDYIVRH 410
WG + +++NG PR G D HP I P +A + D ++Y+Y+VR
Sbjct: 351 TGDGRWGAYANSLMANGHEMPRNGSHDDKAHPAIHPVNYVAIDSLTSADEKKVYEYVVRR 410
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDL 469
F+ D V Q A +E FT + + + T+ + + +P + G+
Sbjct: 411 FLACCSKDAVGHQTTATLQWGNETFTASGLIVTEKNYLEIYTYKKWETTKQLPPLEEGEK 470
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT--VTSGR 527
+ I S +M E +T+PP+++TE+ELI+LM+ +GIGTDA+I HI I QR+Y+ G+
Sbjct: 471 VRISSGQMKEGETSPPNHMTETELIALMDANGIGTDATIAEHIEKIMQRDYIVKHKQGGK 530
Query: 528 R-LVPTSLGIVLVHGYQKIDRE---LVEPTMR 555
+VPT LG+ L+ G+ +++ + L +P +R
Sbjct: 531 EYIVPTPLGMGLIEGFDQMEFDNISLSKPFLR 562
>gi|440475801|gb|ELQ44463.1| DNA topoisomerase 3 [Magnaporthe oryzae Y34]
gi|440487000|gb|ELQ66814.1| DNA topoisomerase 3 [Magnaporthe oryzae P131]
Length = 710
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 166/487 (34%), Positives = 256/487 (52%), Gaps = 12/487 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MT V GH+ + F + +W++ P LFS P + + K + + ++A+ L +
Sbjct: 56 MTCVTGHLTEVQFGPDFKDWNRPTPDHLFSAPLHTQVSNDKKAIAENIRHQAQYARALFI 115
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I E+ E R P V RARFS I I A N V + +
Sbjct: 116 WTDCDREGEHIGGEIREEARK----GKPGIEVKRARFSNIERAHILQAARNPVNLDDMQV 171
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V AR ELDLRIG AFTR+ T + G L ++SYG CQ PTLGF V+R+ +++ F
Sbjct: 172 AAVAARIELDLRIGYAFTRFLTINLRSLNGPLKDLVLSYGSCQFPTLGFVVDRYFRVKNF 231
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
PE +W + L++ +G + TW+RG +FD+++ + ++ + K TV+ VQ K
Sbjct: 232 VPETFWSIKLSIKKDGKTGNFTWTRGRLFDRASVVILYERCIEAKTATVIKVQEKPTRKW 291
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
KP L TVEL ++A+ + + M+IAE+LY +G++SYPRTET ++ + +L ++++
Sbjct: 292 KPLPLTTVELQKMATKFIRISGQQTMEIAEKLYQKGFISYPRTETDRFDKGMNLRTLVQK 351
Query: 352 QESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATR---TQLDGDAWRLYDYI 407
Q WG + ++ G +PR G+ D HPPI P AT +++ +A R+Y+ I
Sbjct: 352 QTQDGRWGPFAQGLVDGGFQQPRNGRHDDKAHPPIHPITYATGAALSEIGAEAGRVYELI 411
Query: 408 VRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES-IPDFKP 466
VR F+ D + E F ++ + V + N + +P
Sbjct: 412 VRRFLACCSEDAQGMATDIDVTYGPETFHAHGVVVIERNYLDVYPYENWNNSAELPRLTV 471
Query: 467 GDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS- 525
G+ I M E KT P YLTE++LI+LM+ +GIGTDA++ HI I R Y T
Sbjct: 472 GEQISPTEAMMTEGKTQAPSYLTEADLIALMDANGIGTDATMAEHIQTIQTRQYARTTEV 531
Query: 526 -GRRLVP 531
GR P
Sbjct: 532 PGRNAQP 538
>gi|389603297|ref|XP_001568961.2| putative DNA topoisomerase III [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505799|emb|CAM44094.2| putative DNA topoisomerase III [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 951
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 185/520 (35%), Positives = 279/520 (53%), Gaps = 32/520 (6%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+M F NW LFS P K T + L A + L+L
Sbjct: 50 VTSVVGHLMEDQFPPNTKNWSTYPFQGLFSAPISKYVRTDLEPVKKNLEALATRADALIL 109
Query: 113 WLDCDKEGENICFEVMEAV---RHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
WLDCD+EGENICFEVM+ V R Q+ + RA FSA+T +D+ A+ NL P+
Sbjct: 110 WLDCDREGENICFEVMQVVQSKRPQVQVK------RAHFSALTARDLLNAVHNLKLPDKR 163
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
+ +V+ARQE+DLRIG FTRYQT F+ + ++ ++S+GPCQ PTLGF V R+ K +
Sbjct: 164 LSDAVEARQEMDLRIGATFTRYQTVKFRHLFAEVPG-VLSFGPCQFPTLGFVVRRYWKQQ 222
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFF----KAVEKEKHV-TVVDVQ 284
F PE ++ TL + SRG ++D+ + + +A E H + +VQ
Sbjct: 223 GFVPEDFF----TLQVQHGDTKFYSSRGSLYDQVAATLIYEDMLQAAAAEGHKGRITNVQ 278
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP-ENF 343
+ P L TV + ++A++ L + M +AE LY +G +SYPRTET Y +
Sbjct: 279 QRPSRRRPPVPLATVIMQKLAATHLRISSERCMTLAESLYQEGLISYPRTETDSYTFQES 338
Query: 344 DLVAVLRQQESSPDWGDHVREVLSNGISKPR----KGKDVGDHPPITPTKL--ATRTQLD 397
+L+ ++R Q ++PD ++ +L++ ++ R G D HPPI PTK ATR +
Sbjct: 339 ELLELIRLQIANPDVAEYATAMLADIAARVRPPLRGGHDDKAHPPIHPTKAWNATRDERG 398
Query: 398 GDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK 457
LY+ IVRHF+ +L D V E F+ ++ G+ + +
Sbjct: 399 S----LYNLIVRHFLASLSPDAVAATTRVSAEFGGESFSTGGTTIVQRGWLDIFPYERWD 454
Query: 458 NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQ 517
+ IP+++ GD +V + + +T+ P +LTES LISLM+ +GIGTDA+I HI +
Sbjct: 455 STCIPNYQIGDTFEPTAVLLKKGRTSAPPHLTESRLISLMDSNGIGTDATIAQHIKTVLD 514
Query: 518 RNYVTVTSGRRLVPTSLGIVLVHGYQKID-RELVEPTMRS 556
R YV G+ LVPT+LGI L Y+ + L++P +R+
Sbjct: 515 REYVR-REGQSLVPTTLGIALASAYESLGLASLLQPQLRA 553
>gi|71756203|ref|XP_829016.1| DNA topoisomerase III [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834402|gb|EAN79904.1| DNA topoisomerase III, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|144583728|gb|ABP01566.1| topoisomerase IIIalpha [Trypanosoma brucei brucei]
gi|261334956|emb|CBH17950.1| DNA topoisomerase III, putative [Trypanosoma brucei gambiense
DAL972]
Length = 918
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 185/513 (36%), Positives = 271/513 (52%), Gaps = 21/513 (4%)
Query: 54 TSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLW 113
TSV GH+M DF + W ++LF+ T KR + ++ L + L LW
Sbjct: 51 TSVSGHLMESDFPPQAAGWASFPIIDLFTLGTVKRVRSDLSEIQKNLRELGRRATTLALW 110
Query: 114 LDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARS 173
+DCD+EGENICFEV++ V+ + +S ++ RA FSA+T +DI AM NL PN + +
Sbjct: 111 MDCDREGENICFEVIDVVQKE---HSSISICRAHFSALTKRDILGAMRNLKAPNRALSEA 167
Query: 174 VDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKP 233
V+ARQELDLR+G FTR+QT F ++ + ++S+GPCQ PTLGF V+R + + F P
Sbjct: 168 VEARQELDLRLGAVFTRFQTLKFCSQFKNF-PKVLSFGPCQFPTLGFLVQRGWEQKGFVP 226
Query: 234 EPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNV----FFKAVEKEKHVTVVDVQSSTKS 289
E Y+ TL L S RG I+DK V F VV+V
Sbjct: 227 EDYF----TLTLQHGDTSFNSVRGPIYDKIAAAVVLQQMFDEARTRPEAEVVEVMKRPNR 282
Query: 290 KTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP-ENFDLVAV 348
+ P L+TV L ++ ++ L + M AE LY +GY+SYPRTET + + +L+ +
Sbjct: 283 RRPPFPLSTVMLQKLCTAHLRISSDQCMTWAESLYQEGYISYPRTETDSFSFTDNELLDI 342
Query: 349 LRQQESSPDWGDHVREVLSNGISKPRK----GKDVGDHPPITPTKLATRTQLDGDAWRLY 404
+ Q +P+ V +L++ K R+ G D HPPI PTK DG A +LY
Sbjct: 343 VGSQRRNPEVSGFVEAMLADPNRKFRRPLNGGHDDKAHPPIYPTKPMPAAN-DGRA-KLY 400
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
+ IVRHF+ D V + E FT + G+ V + K+ ++P +
Sbjct: 401 NLIVRHFLACTSPDAVASTTSVAVVYGGEKFTTSGTTIDEKGWMEVYIYERWKSTTLPTY 460
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
K G+ + + +T+PP LTE++LI+LM+KHGIGTDA+I HI + +R YV
Sbjct: 461 KQGERFRPTHADLEQHRTSPPPNLTEADLITLMDKHGIGTDATISHHIKTVVEREYVK-R 519
Query: 525 SGRRLVPTSLGIVLVHGYQKIDR-ELVEPTMRS 556
G LVPT +G L Y+ L++P MR+
Sbjct: 520 EGSSLVPTHVGNALASAYEVNGLVSLLQPQMRA 552
>gi|327353792|gb|EGE82649.1| DNA topoisomerase [Ajellomyces dermatitidis ATCC 18188]
Length = 757
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 173/563 (30%), Positives = 267/563 (47%), Gaps = 60/563 (10%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH++ +F +Y +W DP LF E + + + A+ L +
Sbjct: 57 MTSVLGHLLSHEFEPRYKSWTSCDPSALFDARIEVFVGSNSEPIADNIKRHARRAGVLFI 116
Query: 113 WLDCDKEGENICFEVME-AVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I E+ A + + RA FS I I A + +A
Sbjct: 117 WTDCDREGEHIGTEIRSVAAQSNQALGRAGGTVRAHFSNIERTHIIHAAHRPADLDEAQA 176
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQG--KYGDLD--ASLISYGPCQTPTLGFCVERHDK 227
+V +R ELDLR+G +FTR+ T + + G+L + LISYG CQ PTLGF VER+ +
Sbjct: 177 NAVASRIELDLRVGASFTRHLTLSLRPVLQRGNLSEASQLISYGSCQFPTLGFIVERYWR 236
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
+R F PEP+W + L G V+ +W+R H+FD+ T + ++ ++ V V+++
Sbjct: 237 VRNFIPEPFWSIKLMHRKAGTRVNFSWARKHLFDRRTAVILYERCLTSQNAQVQKVKTTP 296
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
SK KP L T+EL + S GM +Q+AE+LY +G++SYPRTET Q+ DL
Sbjct: 297 TSKWKPLPLTTLELQKCGSRFFGMDSQKVLQLAEKLYQKGWISYPRTETDQFDRGMDLRG 356
Query: 348 VLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDY 406
++++Q W D+ ++ G S PR G D HPPI P T L + R++++
Sbjct: 357 LVQKQAQGGRWADYATALVEGGFSWPRNGHNDDKAHPPIHPVNFVNPTTLSHEEQRVHEF 416
Query: 407 IVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKP 466
+VRHF+ D ++ E F +L + V + N+ +P F
Sbjct: 417 VVRHFLACCSKDAQGSKTDIIILYGPETFHASGLVILERNYLDVYVYDRWSNQELPPFIK 476
Query: 467 GDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV----- 521
G++ + E K +PP YLTE +L++LM +GIGTDA++ HI I R YV
Sbjct: 477 GEVFEPTEAILSEGKASPPGYLTEPDLLALMNANGIGTDATMADHIVTIIDRQYVEARAQ 536
Query: 522 -----------------------------------------------TVTSGRRLVPTSL 534
+T R +PT+L
Sbjct: 537 PRQARHGNDEEESEELPAQARGGNGRRGRTAVAPRRGGRNSGAGRGGAITGVREFIPTTL 596
Query: 535 GIVLVHGYQKIDRE--LVEPTMR 555
G+ LV G++ + E L++P +R
Sbjct: 597 GVALVEGHENMGFETNLMKPFLR 619
>gi|429961669|gb|ELA41214.1| hypothetical protein VICG_01703 [Vittaforma corneae ATCC 50505]
Length = 791
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 176/520 (33%), Positives = 273/520 (52%), Gaps = 37/520 (7%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPA-FLANEAKDCEFLV 111
TSV GH+ F + W++ +P +LF R P+ KL A + ++ +V
Sbjct: 52 FTSVLGHLFEFSFEDQ-GKWNESNPKDLFKEEIIGR-INPEHKLAAENIKKLSERASLVV 109
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
+W DCD+EGENI ++ + + + RARFSAI+ +I+ A+ NL + N EA
Sbjct: 110 IWTDCDREGENIARQIKTIIETHRKV----CIKRARFSAISRNEIECALENLTEINFLEA 165
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+VDAR ELDLRIG AFTR QT + ++IS+GPCQ PTL F V+RH +I F
Sbjct: 166 DAVDARIELDLRIGSAFTRIQT------ISHNNGNVISFGPCQIPTLNFVVQRHIQIENF 219
Query: 232 KPEPYWLLDLTL--------NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV 283
E Y+ L T+ + + W R H+FDK+ C ++F V + + D
Sbjct: 220 ISEKYFSLQNTVLTDQNSKKQNDTIKNVFAWERKHLFDKN-CIIYFYNVLRNSKAVISDK 278
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
+ S K K +P L TVE ++ SS + H M IAE+LY GY+SYPRTET +P++F
Sbjct: 279 KVSNKEKYRPLPLRTVEFQKICSSFYKIDSHRLMSIAEKLYNNGYISYPRTETDSFPKSF 338
Query: 344 DLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWR 402
++ + ++ P G++ PR G + H PI P L + L GD +
Sbjct: 339 GFKNIINKLKNDPRLGEYASNF---AFVYPRSGSNNDQAHSPIYP--LKDGSDLQGDERK 393
Query: 403 LYDYIVRHFIGTLCGDL--VYTQKVAKFSVAD-----EMFTMEAKYLLHPGFTGVMTWSA 455
++++I R F+G + + V T+ D E F + ++ + V +
Sbjct: 394 IFEFISRRFLGCVSKNAKGVETEYTMNIFFNDGLSQHETFKCKGLNIVERNYLDVYIYDK 453
Query: 456 MKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNI 515
++ + DF+ +++ +V+++E TT P++LTES+LISLM+K+GIGTDA+I HI+ I
Sbjct: 454 WESSQVGDFRINEVVE-NNVEIIEGNTTKPEHLTESDLISLMDKNGIGTDATIHEHIHKI 512
Query: 516 CQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMR 555
R YV + +P LG+ L+ Y I + EPT+R
Sbjct: 513 QTRGYVK-KEKFKFIPLKLGLNLIKAYNSIGLPISEPTLR 551
>gi|407399794|gb|EKF28434.1| DNA topoisomerase III, putative [Trypanosoma cruzi marinkellei]
Length = 917
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 186/516 (36%), Positives = 270/516 (52%), Gaps = 27/516 (5%)
Query: 54 TSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR---EATPKLKLPAFLANEAKDCEFL 110
TSV GH+M +F + +W + LF+ K E P K L A + L
Sbjct: 51 TSVAGHLMNDEFPPETRSWQSYPLVNLFTASITKHVKPEMEPVKKNLETLGRRASN---L 107
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
VLW+DCD+EGENICFEVM+ V+ +N + RA FSA+T +D+ +A+ +L PN
Sbjct: 108 VLWMDCDREGENICFEVMQVVQ---GVNRSINICRAHFSALTRRDLLSAVRSLKAPNKAL 164
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
+ +V+ARQE+DLRIG F+R+QT F+ + + ++S+GPCQ PTLGF V RH +
Sbjct: 165 SDAVEARQEIDLRIGAVFSRFQTIKFRDAFSGM-PRVLSFGPCQIPTLGFVVRRHREREG 223
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNV----FFKAVEKEKHVTVVDVQSS 286
F E ++ TL + RG +FD+ + ++ VVDV
Sbjct: 224 FVQEDFF----TLVMRHGQTVFHGCRGSVFDQIAATLVLEMMLESAGPNAEALVVDVVRR 279
Query: 287 TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD-L 345
+ P L TV L ++A++ L + M AE LY +G++SYPRTET + D L
Sbjct: 280 PTRRHPPVPLATVALQKLAATHLHISSEQCMTWAESLYQEGFISYPRTETDSFSFTDDEL 339
Query: 346 VAVLRQQESSPDWGDHVREVL---SNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAW 401
+ Q +P+ D+V +L SN +P KG D HPPI PTKL Q A
Sbjct: 340 REIAGVQRDNPEVADYVGAMLDDPSNKFRRPLKGGHDDKAHPPIYPTKLMRAKQDSRGA- 398
Query: 402 RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI 461
LY+ IVRHF+ L D V +E FT +L G+ V + + I
Sbjct: 399 -LYNLIVRHFLACLSPDAVAATTAVTAVFGEEKFTTSGTAILEKGWLEVYPYERWNSTFI 457
Query: 462 PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
P ++ G+ + + + + +TTPP +LTE+ LI+LM++HGIGTDA+I HI + R YV
Sbjct: 458 PAYQQGERFVPKDISLEKHRTTPPPHLTETALIALMDEHGIGTDATIAQHIKTVLDRGYV 517
Query: 522 TVTSGRRLVPTSLGIVLVHGYQKID-RELVEPTMRS 556
G LVPT+LGI L Y+ I L++P +R+
Sbjct: 518 K-REGSFLVPTALGIALASAYEVIGLLSLLQPQLRA 552
>gi|396081254|gb|AFN82872.1| DNA topoisomerase II [Encephalitozoon romaleae SJ-2008]
Length = 622
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 170/447 (38%), Positives = 244/447 (54%), Gaps = 13/447 (2%)
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
+V+W DCD+EGENI ++ + V N+N V RARFS IT KDI+ A+ NL + N
Sbjct: 2 VVIWTDCDREGENIGRQIRDIVLKVKNVN----VKRARFSGITLKDIEEALRNLGEINEA 57
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
EA +VD R ELDLRIG AFTR QT GK G + ++S+GPCQ PTLGF VER +
Sbjct: 58 EAEAVDVRMELDLRIGSAFTRLQT-LSLGKVGQ-EKKILSFGPCQVPTLGFVVERARERE 115
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKS 289
+F PE +W L + + TW RG +FDK+ F K + EK +V + +
Sbjct: 116 SFVPEMFWTLKFKVRNKKLEDEFTWRRGSVFDKNCVIYFHKGLVGEK-AKIVLKEMKERI 174
Query: 290 KTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL 349
K +P L TVEL + SS + H M++AE LY +GY+SYPRTET + + FD +L
Sbjct: 175 KYRPLPLRTVELQKKCSSYFRLSGHKVMEVAEGLYNRGYISYPRTETDVFDKKFDFKYIL 234
Query: 350 RQQESSPDWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKLATRTQLDGDAWRLYDYIV 408
+ G++ E L PR GK+ H PI P K L G +YD+I
Sbjct: 235 NKLSKDSKVGEYA-ERLGRVFKYPRNGKNNDMAHLPIYPLKEG--VGLSGSDRDIYDFIC 291
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGD 468
R F+G + D + + V E F + ++ + V + N+ + DF +
Sbjct: 292 RRFLGCISEDAKGLETRYELKVGMETFDLSGIRVVEKNYLEVYYYDKWDNKEVSDFVMEE 351
Query: 469 LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRR 528
++ + + E KTT P YL+E+ELISLM+K+GIGTDA+I HI I +R Y + G
Sbjct: 352 IVS-GDLHISEGKTTAPKYLSEAELISLMDKNGIGTDATIHEHIQKIQERGY-AIKVGEE 409
Query: 529 LVPTSLGIVLVHGYQKIDRELVEPTMR 555
+ P LG+ L+ GY++ + +P++R
Sbjct: 410 IRPLGLGMALIDGYERFGLNVSKPSLR 436
>gi|322702147|gb|EFY93895.1| DNA topoisomerase III [Metarhizium acridum CQMa 102]
Length = 689
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 179/582 (30%), Positives = 275/582 (47%), Gaps = 82/582 (14%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCP--------------------TEKREATP 92
MT V GH+ ++FTS+Y NW P LF+ P + E
Sbjct: 55 MTCVTGHLTNVEFTSEYKNWSYPPPETLFNAPIVTSIHDVCVDAHVNDNGFMADWLENQD 114
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT 152
K + LA++A+ LV+W DCD+EGE+I E+++A R N+ V RA+FS +
Sbjct: 115 KKSIAKNLADQARYARLLVIWTDCDREGEHIGQEIVDAARKG---NASIQVKRAKFSNVE 171
Query: 153 DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGP 212
+ +A LV + + +V R ELDLRIG AFTR+ T + G +++ +SYG
Sbjct: 172 RAHVLSAARRLVDLDKKQVDAVSTRIELDLRIGYAFTRFMTNSLRPLGGPMESLTLSYGE 231
Query: 213 CQTPTLG---------FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKS 263
+T +R+ +++ F PEP+W + L N +G V+ +W R +FD+
Sbjct: 232 QKTQEQEKWSSSKIRPLTFDRYFRVKNFIPEPFWSISLMHNRDGKNVNFSWERNRLFDRM 291
Query: 264 TCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERL 323
T + ++ K V++VQ + KP L TVEL + A+ L M AM IAE L
Sbjct: 292 TTIILYERCLLAKTAKVINVQEKPTRRYKPLPLTTVELQKAATRLLRMSGQQAMTIAEGL 351
Query: 324 YTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDH 382
Y +G++SYPRTET ++ + +L A++++Q WG + +++ +PR+G+ D H
Sbjct: 352 YNKGFISYPRTETDRFDKGMNLKALVQKQSPDQRWGQFAQNLVNGAFKQPREGRHDDKAH 411
Query: 383 PPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYL 442
PPI P A + L D LY+Y+VR F+ D + DE F +
Sbjct: 412 PPIHPITYAAPSVLSPDEGLLYEYVVRRFLACCSEDALGMATTVDLQYGDEFFGSHGVIV 471
Query: 443 LHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGI 502
L + V + N +P F G+ M E KT+PP +LTE++LI+LM+ +GI
Sbjct: 472 LERNYLDVFVYDKWDNHELPRFARGEFFQPTEAIMSEGKTSPPSHLTEADLIALMDANGI 531
Query: 503 GTDASIPVHINNICQRNYV----------------------------------------- 521
GTDA++ HI I R YV
Sbjct: 532 GTDATMAEHIQKIQDREYVATVGNSGAMASEDDDGVQDRASSGRGRGTGRARGGRAARGT 591
Query: 522 -TVTSGRR-----LVPTSLGIVLVHGYQKIDRE--LVEPTMR 555
T +SGRR +PT LG+ L+ GY ++ E L +P +R
Sbjct: 592 STSSSGRRGGVRVFIPTQLGVALILGYDRMGFETSLGKPFLR 633
>gi|169622904|ref|XP_001804860.1| hypothetical protein SNOG_14677 [Phaeosphaeria nodorum SN15]
gi|160704874|gb|EAT77869.2| hypothetical protein SNOG_14677 [Phaeosphaeria nodorum SN15]
Length = 681
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 177/590 (30%), Positives = 269/590 (45%), Gaps = 84/590 (14%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR--EATPKLKLPAF----------- 99
T V GHI+ DF ++ W P +LF P + E ++PA
Sbjct: 35 FTCVAGHIVAQDFPDRFRKWHSCQPADLFDAPIQSSIAEVRTNARVPASSLTDKTQDKKI 94
Query: 100 ----LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITD-- 153
+ +A+ L +W DCD+EGE+I E+ + + +N V+RARFS I
Sbjct: 95 VASNIEAQARYASILFIWTDCDREGEHIGTEIRDIA---LKVNPNMQVYRARFSNIERAW 151
Query: 154 --------KDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQG---KYGD 202
+ A N ++ + +A +V AR ELDLR+G AFTR QT Q GD
Sbjct: 152 VILFPVDFNHVIQASQNPIRLDEAQANAVSARIELDLRLGAAFTRMQTMALQNMIPTQGD 211
Query: 203 LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDK 262
+ISYG CQ PTLGF V+R+ ++R F PEP+W + + + + V W RGH+FD+
Sbjct: 212 ERGKVISYGSCQFPTLGFVVDRYLRVRNFVPEPFWYIKVAHTKDKIDVKFNWRRGHLFDR 271
Query: 263 STCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAER 322
+ F+ K V+ + K KP L TVEL + S L M M++AE
Sbjct: 272 LAVIIIFERCLLAKTAKVMKMAKKPTKKWKPLPLTTVELQKNGSRFLRMTSQEVMKVAED 331
Query: 323 LYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD- 381
LYT+G++SYPRTET Q+ DL A++ +Q WG + ++ G +PR G++
Sbjct: 332 LYTKGWISYPRTETDQFDRGMDLRALVARQTQDNAWGQFAQSLMDGGFKQPRDGRNNDKA 391
Query: 382 HPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKY 441
HPPI P TQL+ + R+Y+++VR F+ D + E F
Sbjct: 392 HPPIHPVNYVAPTQLNQNEKRVYEFVVRRFLACCSEDAAGEATDIEIDYGGEFFHAHGLT 451
Query: 442 LLHPGFTGVMTWSA-MKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKH 500
++ + V + + ++ +P + G+ M + +T+ P YLTE ELI+LM+ +
Sbjct: 452 VIARNYLNVYPYDKWVSSQELPQYTVGETFEPTEANMHDGQTSAPAYLTEPELIALMDAN 511
Query: 501 GIGTDASIPVHINNICQRNYV--------------------------------------- 521
GIGTDA++ HI + +R YV
Sbjct: 512 GIGTDATMAEHIAKVQEREYVIARPKGGGAPANNDDGGGRGRGRGRGRGGARGGRGGRGG 571
Query: 522 --------TVTSGRRLVPTSLGIVLVHGYQK--IDRELVEPTMRSAYRVQ 561
T + +PT+LGI L+ GY I+ L +P +R VQ
Sbjct: 572 SAAQNERGATTGIQEFIPTTLGIALIEGYDNVGIETSLSKPFLRKEMEVQ 621
>gi|261191759|ref|XP_002622287.1| DNA topoisomerase III [Ajellomyces dermatitidis SLH14081]
gi|239589603|gb|EEQ72246.1| DNA topoisomerase III [Ajellomyces dermatitidis SLH14081]
Length = 649
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 173/563 (30%), Positives = 267/563 (47%), Gaps = 60/563 (10%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH++ +F +Y +W DP LF E + + + A+ L +
Sbjct: 32 MTSVLGHLLSHEFEPRYKSWTSCDPSALFDARIEVFVGSNSEPIADNIKRHARRAGVLFI 91
Query: 113 WLDCDKEGENICFEVME-AVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I E+ A + + RA FS I I A + +A
Sbjct: 92 WTDCDREGEHIGTEIRSVAAQSNQALGRAGGTVRAHFSNIERTHIIHAAHRPADLDEAQA 151
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQG--KYGDLD--ASLISYGPCQTPTLGFCVERHDK 227
+V +R ELDLR+G +FTR+ T + + G+L + LISYG CQ PTLGF VER+ +
Sbjct: 152 NAVASRIELDLRVGASFTRHLTLSLRPVLQRGNLSEASQLISYGSCQFPTLGFIVERYWR 211
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
+R F PEP+W + L G V+ +W+R H+FD+ T + ++ ++ V V+++
Sbjct: 212 VRNFIPEPFWSIKLMHRKAGTRVNFSWARKHLFDRRTAVILYERCLTSQNAQVQKVKTTP 271
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
SK KP L T+EL + S GM +Q+AE+LY +G++SYPRTET Q+ DL
Sbjct: 272 TSKWKPLPLTTLELQKCGSRFFGMDSQKVLQLAEKLYQKGWISYPRTETDQFDRGMDLRG 331
Query: 348 VLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDY 406
++++Q W D+ ++ G S PR G D HPPI P T L + R++++
Sbjct: 332 LVQKQAQGGRWADYATALVEGGFSWPRNGHNDDKAHPPIHPVNFVNPTTLSHEEQRVHEF 391
Query: 407 IVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKP 466
+VR F+ D ++ E F +L + V + N+ +P F
Sbjct: 392 VVRRFLACCSKDAQGSKTDIIILYGPETFHASGLVILERNYLDVYVYDRWSNQELPPFIK 451
Query: 467 GDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV----- 521
G++ + E KT+PP YLTE +L++LM +GIGTDA++ HI I R YV
Sbjct: 452 GEVFEPTEAILSEGKTSPPGYLTEPDLLALMNANGIGTDATMADHIVTIIDRQYVEARAQ 511
Query: 522 -----------------------------------------------TVTSGRRLVPTSL 534
+T R +PT+L
Sbjct: 512 PRQARHGNDEEESEELPAQARGGNGRRGRTAVAPRRGGRNSGAGRGGAITGVREFIPTTL 571
Query: 535 GIVLVHGYQKIDRE--LVEPTMR 555
G+ LV G++ + E L++P +R
Sbjct: 572 GVALVEGHENMGFETNLMKPFLR 594
>gi|71654804|ref|XP_816014.1| DNA topoisomerase III [Trypanosoma cruzi strain CL Brener]
gi|70881114|gb|EAN94163.1| DNA topoisomerase III, putative [Trypanosoma cruzi]
Length = 921
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 184/516 (35%), Positives = 271/516 (52%), Gaps = 27/516 (5%)
Query: 54 TSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR---EATPKLKLPAFLANEAKDCEFL 110
TSV GH+M +F + +W + LF+ K E P K L A + L
Sbjct: 51 TSVAGHLMNDEFPPETRSWQNYPLVNLFTASITKHVKPEMEPVKKNLEALGRRASN---L 107
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
VLW+DCD+EGENICFEVM+ V+ +N ++ RA FSA+T +D+ +A+ +L PN
Sbjct: 108 VLWMDCDREGENICFEVMQVVQ---GVNRSISICRAHFSALTRRDLLSAVRSLKAPNKAL 164
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
+ +V+ARQE+DLRIG F+R+QT F+ + + ++S+GPCQ PTLGF V RH +
Sbjct: 165 SDAVEARQEIDLRIGAVFSRFQTIKFRDAFSGM-PRVLSFGPCQIPTLGFVVRRHREREG 223
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNV----FFKAVEKEKHVTVVDVQSS 286
F E ++ TL + RG +FD+ + ++ VVDV
Sbjct: 224 FVQEDFF----TLVMRHGQTVFHGCRGSVFDQLAATLVLETMLESAGPNAEALVVDVVRR 279
Query: 287 TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD-L 345
+ P L TV L ++A++ L + M AE LY +G++SYPRTET + D L
Sbjct: 280 PTRRHPPVPLATVALQKLAATHLHISSEQCMTWAESLYQEGFISYPRTETDSFSFTDDEL 339
Query: 346 VAVLRQQESSPDWGDHVREVL---SNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAW 401
+ Q +P+ D+V +L SN +P KG D HPPI PTKL + A
Sbjct: 340 REIAGVQRDNPEVADYVGAMLDDSSNKFRRPLKGGHDDKAHPPIYPTKLMPARHDNRSA- 398
Query: 402 RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI 461
LY+ IVRHF+ L D V +E FT +L G+ V + + +
Sbjct: 399 -LYNLIVRHFLACLSPDAVAATTAVTAVFGEEKFTTSGTAILEKGWLEVYPYERWHSTCL 457
Query: 462 PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
P ++ G+ + + + + +TTPP +LTE+ LI+LM++HGIGTDA+I HI + R YV
Sbjct: 458 PAYQQGERFVPKDISLEKHRTTPPPHLTETALIALMDEHGIGTDATIAQHIKTVLDRGYV 517
Query: 522 TVTSGRRLVPTSLGIVLVHGYQKID-RELVEPTMRS 556
G LVPT+LGI L Y+ I L++P +R+
Sbjct: 518 K-REGSFLVPTALGIALASAYEVIGLLSLLQPQLRA 552
>gi|71651605|ref|XP_814477.1| DNA topoisomerase III [Trypanosoma cruzi strain CL Brener]
gi|70879452|gb|EAN92626.1| DNA topoisomerase III, putative [Trypanosoma cruzi]
Length = 921
Score = 288 bits (737), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 182/516 (35%), Positives = 273/516 (52%), Gaps = 27/516 (5%)
Query: 54 TSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR---EATPKLKLPAFLANEAKDCEFL 110
TSV GH+M +F + +W + LF+ K E P K L + + L
Sbjct: 51 TSVAGHLMNDEFPPETRSWQNYPLVNLFTASITKHVKPEMEPVKKNLEALGRRSSN---L 107
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
VLW+DCD+EGENICFEVM+ V+ +N +++RA FSA+T +D+ +A+ +L PN
Sbjct: 108 VLWMDCDREGENICFEVMQVVQ---GVNRSISIFRAHFSALTRRDLLSAVRSLKAPNKAL 164
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
+ +V+ARQE+DLRIG F+R+QT F+ + + ++S+GPCQ PTLGF V RH +
Sbjct: 165 SDAVEARQEIDLRIGAVFSRFQTIKFRDAFSGM-PRVLSFGPCQIPTLGFVVRRHREREG 223
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNV----FFKAVEKEKHVTVVDVQSS 286
F E ++ TL + RG +FD+ + ++ VVDV
Sbjct: 224 FVQEDFF----TLVMRHGQTVFHGCRGSVFDQLAATLVLETMLESAGPNAEALVVDVVRR 279
Query: 287 TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD-L 345
+ P L TV L ++A++ L + M AE LY +G++SYPRTET + D L
Sbjct: 280 PTRRHPPVPLATVALQKLAATHLHISSEQCMTWAESLYQEGFISYPRTETDSFSFTDDEL 339
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPRK----GKDVGDHPPITPTKLATRTQLDGDAW 401
+ Q +P+ D+V +L + K R+ G D HPPI PTKL R + D +
Sbjct: 340 REIAGVQRENPEVADYVGAMLDDSSHKFRRPLKGGHDDKAHPPIYPTKL-MRAKHDNRS- 397
Query: 402 RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI 461
LY+ IVRHF+ L D V +E FT +L G+ V + + +
Sbjct: 398 ALYNLIVRHFLACLSPDAVAATTAVTAVFGEEKFTTSGTAILEKGWLEVYPYERWHSTCL 457
Query: 462 PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
P ++ G+ + + + + +TTPP +LTE+ LI+LM++HGIGTDA+I HI + R YV
Sbjct: 458 PAYQQGERFVPKDISLEKHRTTPPPHLTETALIALMDEHGIGTDATIAQHIKTVLDRGYV 517
Query: 522 TVTSGRRLVPTSLGIVLVHGYQKID-RELVEPTMRS 556
G LVPT+LGI L Y+ I L++P +R+
Sbjct: 518 K-REGSFLVPTALGIALASAYEVIGLLSLLQPQLRA 552
>gi|56900852|gb|AAW31721.1| DNA topoisomerase III alpha [Trypanosoma cruzi]
Length = 921
Score = 288 bits (736), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 182/516 (35%), Positives = 273/516 (52%), Gaps = 27/516 (5%)
Query: 54 TSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR---EATPKLKLPAFLANEAKDCEFL 110
TSV GH+M +F + +W + LF+ K E P K L + + L
Sbjct: 51 TSVAGHLMNDEFPPETRSWQNYPLVNLFTASITKHVKPEMEPVKKNLEALGRRSSN---L 107
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
VLW+DCD+EGENICFEVM+ V+ +N +++RA FSA+T +D+ +A+ +L PN
Sbjct: 108 VLWMDCDREGENICFEVMQVVQ---GVNRSISIFRAHFSALTRRDLLSAVRSLKAPNKAL 164
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
+ +V+ARQE+DLRIG F+R+QT F+ + + ++S+GPCQ PTLGF V RH +
Sbjct: 165 SDAVEARQEIDLRIGAVFSRFQTIKFRDAFSGM-PRVLSFGPCQIPTLGFVVRRHREREG 223
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNV----FFKAVEKEKHVTVVDVQSS 286
F E ++ TL + RG +FD+ + ++ VVDV
Sbjct: 224 FVQEDFF----TLVMRHGQTVFHGCRGSVFDQLAATLVLETMLESAGPNAEALVVDVVRR 279
Query: 287 TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD-L 345
+ P L TV L ++A++ L + M AE LY +G++SYPRTET + D L
Sbjct: 280 PTRRHPPVPLATVALQKLAATHLHISSEQCMTWAESLYQEGFISYPRTETDSFSFTDDEL 339
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPRK----GKDVGDHPPITPTKLATRTQLDGDAW 401
+ Q +P+ D+V +L + K R+ G D HPPI PTKL R + D +
Sbjct: 340 REIAGVQRDNPEVADYVGAMLDDSSHKFRRPLKGGHDDKAHPPIYPTKL-MRAKHDNRS- 397
Query: 402 RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI 461
LY+ IVRHF+ L D V +E FT +L G+ V + + +
Sbjct: 398 ALYNLIVRHFLACLSPDAVAATTAVTAVFGEEKFTTSGTAILEKGWLEVYPYERWHSTCL 457
Query: 462 PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
P ++ G+ + + + + +TTPP +LTE+ LI+LM++HGIGTDA+I HI + R YV
Sbjct: 458 PAYQQGERFVPKDISLEKHRTTPPPHLTETALIALMDEHGIGTDATIAQHIKTVLDRGYV 517
Query: 522 TVTSGRRLVPTSLGIVLVHGYQKID-RELVEPTMRS 556
G LVPT+LGI L Y+ I L++P +R+
Sbjct: 518 K-REGSFLVPTALGIALASAYEVIGLLSLLQPQLRA 552
>gi|21226285|ref|NP_632207.1| DNA topoisomerase III [Methanosarcina mazei Go1]
gi|20904529|gb|AAM29879.1| DNA topoisomerase III [Methanosarcina mazei Go1]
Length = 832
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 176/513 (34%), Positives = 258/513 (50%), Gaps = 22/513 (4%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+ + GHIM DF KYN W +VDP L EK + + A + N AK + ++L
Sbjct: 47 VMGLSGHIMNYDFPEKYNKWSEVDPGTLLGVDPEK--FVTRKEYEAAIKNLAKRADKIIL 104
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
D D+EGENI FE ++ V RARFSA++ K+++ A N V P+ A
Sbjct: 105 ACDYDREGENIGFEAKTLAEEVTDV----PVARARFSALSPKEVRKAFENPVDPDHNLAM 160
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+ +ARQ LDL++G AFTR+ T + K D ++S GPCQTPT GF ER IR F+
Sbjct: 161 AAEARQILDLKMGAAFTRFVTLSVREKARTKD--VLSIGPCQTPTCGFVYEREKAIRAFE 218
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
+ +W + G T G+I DK FK ++ K VV +
Sbjct: 219 AKDFWKITAVFAAKGGEFEGTHRAGNIHDKEKAAEIFKRLKGAKEGLVVKKTVKEAKTSP 278
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL--- 349
P LNT E ++ AS LG+ P A++ AE+LY G+ SYPRTET +Y ++FD +++
Sbjct: 279 PNPLNTTEFLKRASKFLGISPEVALETAEQLYLAGFTSYPRTETNKYADDFDFKSLVFDF 338
Query: 350 -RQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDG-----DAWRL 403
RQ+E P +LS I KD DHPPI P + A R ++ A +
Sbjct: 339 ARQKEYKP----FAESILSAPIVPKNGEKDAHDHPPIHPIRAAARGEVSSAVNIPQAAEV 394
Query: 404 YDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPD 463
YD I RHF+ L V+ + V +E F L PG+ V + K++ +P
Sbjct: 395 YDLIARHFLANLMPAAVFEKTHLHLQVKEEPFDSSGTVLKEPGWLEVYPFENKKDKLLPF 454
Query: 464 FKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV 523
+ + + ++ + + KT+PP LTE+EL++LM++HGIGT A+ P HI +R Y
Sbjct: 455 VEEKERVDVKKLSNTKSKTSPPKKLTEAELLTLMDRHGIGTKATAPTHIETNKKRGYFE- 513
Query: 524 TSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
G+ + G L+ G LV+P +RS
Sbjct: 514 NKGKTISILDTGFTLMEGLSLSVPILVKPDIRS 546
>gi|374327011|ref|YP_005085211.1| DNA topoisomerase [Pyrobaculum sp. 1860]
gi|356642280|gb|AET32959.1| DNA topoisomerase (topA) [Pyrobaculum sp. 1860]
Length = 598
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 184/522 (35%), Positives = 269/522 (51%), Gaps = 44/522 (8%)
Query: 55 SVCGHIMGLDFTSKYNNWDKVDPLELFSCP---TEKREATPKLKLPAFLANEAKDCEFLV 111
+ GHIM DF ++ N W + P ELF+ +REA L L A + +
Sbjct: 47 GLSGHIMDFDFAARQNVWTWLPPEELFNATPLLVVRREA---LDYVKALRALAAKADEVY 103
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
L LD D EGE I +E VR ++N + R F+A+T ++I AA K ++ +
Sbjct: 104 LALDADVEGEAIAYEAALVVR---SVNKRAPIRRVLFNAVTPREITAAFQRPTKLDLKKV 160
Query: 172 RSVDARQELDLRIGCAFTRYQT-----KFFQGKYGDLDASLISYGPCQTPTLGFCVERHD 226
V R ++DL +G AFTR+ T +G++ +SYGPCQTP LG V R
Sbjct: 161 EKVFTRMQIDLTLGAAFTRFLTLAVREHLERGRF-------LSYGPCQTPVLGMVVTREL 213
Query: 227 KIRTFKPEPYWLLDLTLNLNG----VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVD 282
+ R FKPE Y++L + + G ++ V + +++ +V KH V
Sbjct: 214 QRRNFKPEKYYILKALVEVEGHRIEMSSDVRYKSREEGERAAASV--------KHGVVKT 265
Query: 283 VQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPEN 342
P+ L TVEL R AS LG+ + IAE LY GY+SYPRTETT YP+
Sbjct: 266 ALYKPHEVEPPEPLETVELERRASRWLGINAKKTLDIAEELYRAGYISYPRTETTIYPQT 325
Query: 343 FDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQL------ 396
DL +LR + + G + E+L R D G HPPI PTK AT+ ++
Sbjct: 326 LDLREILRDLAET-EHGPYAEELLRRSFKPTRGDSDDGAHPPIYPTKGATKAEIMKIFGK 384
Query: 397 -DGDAWRLYDYIVRHFIGTLCG-DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
AW +YD++VRHF+ TL LV QK+A EM+ E + ++ G+ + W
Sbjct: 385 AGAQAWAIYDFVVRHFLATLSPPALVEKQKIAAAFGGVEMYA-EGQRVISEGYWRIYPWE 443
Query: 455 AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINN 514
+++ +P PG V++VER+T PP +TESEL++LM+K+GIGTDA++ HI+
Sbjct: 444 RQRDKPLPRVSPGAPARAIKVEVVERETEPPPQMTESELLALMKKYGIGTDATMQDHIHT 503
Query: 515 ICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
+R Y+ + G R VPT LGI L + EL+EPT+R+
Sbjct: 504 NVKRGYMKLAKG-RCVPTDLGIALATALFQHAPELIEPTVRA 544
>gi|294659706|ref|XP_002770630.1| DEHA2G13376p [Debaryomyces hansenii CBS767]
gi|199434172|emb|CAR65964.1| DEHA2G13376p [Debaryomyces hansenii CBS767]
Length = 624
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 160/524 (30%), Positives = 276/524 (52%), Gaps = 15/524 (2%)
Query: 43 PLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLAN 102
P +G LV MT+V GHI +DF + ++ W K +P LF P + + +++
Sbjct: 45 PGYG-LVDVTMTAVMGHITNMDFPNTFS-WGKCNPGRLFEAPL--IDVISNKDVYNNISS 100
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWN 162
EA+ L++W DCD+EGE I E+ A + + +WR++FS + + A N
Sbjct: 101 EARSATKLMIWTDCDREGEFIGHEIFLAAYKGNSSIKVEDIWRSQFSHLERSHVLQAAKN 160
Query: 163 LVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQ-GKYGDLD-ASLISYGPCQTPTLGF 220
+K ++ +V R E+DLR+G +FTR+ T+ F+ + ++ S ISYG CQ PTLGF
Sbjct: 161 PIKLDMNSVYAVSCRMEIDLRVGASFTRFLTELFRRSQVIKMEKGSFISYGTCQFPTLGF 220
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTV 280
V+R++++++F E +W + + + + V +W++ H+FD+ + ++ + +
Sbjct: 221 IVDRYNRVKSFIAEDFWYISVEVKKDNQNVQFSWTKHHLFDRFYVTLLYQNCLENSEGKI 280
Query: 281 VDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP 340
++ +P L TV+L + SS + A+ AE+LY +G++SYPRTET ++P
Sbjct: 281 SNLTKKPTKNWRPLPLTTVQLQKDCSSFFKISAKRALDAAEKLYNKGFISYPRTETDKFP 340
Query: 341 ENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDG- 398
DL ++ +Q WG + +L PR G D HPPI P LD
Sbjct: 341 PTMDLRIIIEKQRQDSRWGTYASALLDQNFRTPRGGNNDDKAHPPIHPVNYVNIDSLDKP 400
Query: 399 DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKN 458
D ++Y+Y+VR ++ D Q A +E+FT +L + V + + ++
Sbjct: 401 DEKKVYEYVVRRYLACCSDDAKGEQTSATLQWGNEIFTASGLTVLERNYLDVYPYRSWES 460
Query: 459 -ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQ 517
+P F G+ I I KM E +T P ++TE ELI+LM+ +GIGTDA+I HI+ +
Sbjct: 461 TRQLPSFTEGEAIKISYSKMKEGRTGAPQHMTEPELIALMDVNGIGTDATIAEHIDKVLT 520
Query: 518 RNYVT---VTSGRRLVPTSLGIVLVHGYQKIDRE---LVEPTMR 555
R Y+ ++ ++P+ LG+ L+ G+ +++ E L +P +R
Sbjct: 521 RGYIVKIRQSTTEYIIPSELGMGLIEGFNQMEFENISLSKPFLR 564
>gi|435851915|ref|YP_007313501.1| topoisomerase IA [Methanomethylovorans hollandica DSM 15978]
gi|433662545|gb|AGB49971.1| topoisomerase IA [Methanomethylovorans hollandica DSM 15978]
Length = 791
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 176/514 (34%), Positives = 272/514 (52%), Gaps = 18/514 (3%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
+++ + GHIMG DF + NNW VDP L T + K + + A++ + +
Sbjct: 58 WQVMGLSGHIMGYDFPQELNNWRSVDPAILID--TRPIKTVTKKPFADAIISLAREADAI 115
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
+L D D+EGENI FE E S V RARFS+++D +I A N V+P+
Sbjct: 116 ILACDFDREGENIGFEAKELASRV----SRAPVKRARFSSLSDSEIIKAFDNPVEPDAAM 171
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
A S +ARQ LDL++G AFTRY T + + ++S GPCQTPT GF ER I+
Sbjct: 172 AMSAEARQILDLKMGAAFTRYLTLAVRERA--RTKEILSIGPCQTPTCGFVYERDKAIKE 229
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
F PE +W ++ + + G+I DK+ F + K +V +S T+ K
Sbjct: 230 FNPEDFWKIEALFHAKDMDFKGVHRAGNIKDKAKAAEIFDRIRAGK-TGLVTKKSVTEIK 288
Query: 291 TK-PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL 349
T P LNT E ++ AS L + P A++IAE+LY G+ SYPRTET +Y ++FD + +
Sbjct: 289 TNAPYPLNTTEFLKRASKFLNISPESALEIAEQLYLNGFTSYPRTETNKYADDFDFKSKV 348
Query: 350 RQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDG-----DAWRL 403
+S ++ DH +LS G R G KD DHPPI P K +++ A ++
Sbjct: 349 -IAFTSTEYRDHALAILSGGDIVVRNGIKDGHDHPPIHPIKAVAVKEVEKAVKTEGAGKI 407
Query: 404 YDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPD 463
YD I RHF+ L ++ + + +V E+F + + G+ V + ++ +PD
Sbjct: 408 YDLIARHFLANLMPAALFEKTHLEITVEKELFDSSGSIMKNEGWMVVYPFETKNDKLLPD 467
Query: 464 FKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV 523
K D + ++ ++ + KTTPP +LTE+EL++LM+KHGIGT A+ P HI +R Y
Sbjct: 468 IKEQDEVKVKKLENIASKTTPPKHLTEAELLTLMDKHGIGTKATAPSHIETNKKRGYFE- 526
Query: 524 TSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
T G+ +V G +L+ +V+P +R++
Sbjct: 527 TKGKTIVIQETGFILMDALSTSIPVVVKPEIRAS 560
>gi|452208804|ref|YP_007488918.1| DNA topoisomerase I [Methanosarcina mazei Tuc01]
gi|452098706|gb|AGF95646.1| DNA topoisomerase I [Methanosarcina mazei Tuc01]
Length = 832
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 176/513 (34%), Positives = 257/513 (50%), Gaps = 22/513 (4%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+ + GHIM DF KYN W +VDP L EK + + A + N AK + ++L
Sbjct: 47 VMGLSGHIMNYDFPEKYNKWSEVDPGTLLGVDPEK--FVTRKEYEAAIKNLAKRADKIIL 104
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
D D+EGENI FE ++ V RARFSA++ K+++ A N V P+ A
Sbjct: 105 ACDYDREGENIGFEAKTLAEEVTDV----PVARARFSALSPKEVRKAFENPVDPDHNLAM 160
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+ +ARQ LDL++G AFTR+ T + K D ++S GPCQTPT GF ER IR F+
Sbjct: 161 AAEARQILDLKMGAAFTRFVTLSVREKARTKD--VLSIGPCQTPTCGFVYEREKAIRAFE 218
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
+ +W + G T G+I DK FK ++ K VV +
Sbjct: 219 AKDFWKITAVFAAKGGEFEGTHRAGNIHDKEKAAEIFKRLKGAKEGLVVKKTVKEAKTSP 278
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL--- 349
P LNT E ++ AS LG+ P A++ AE+LY G+ SYPRTET +Y ++FD +++
Sbjct: 279 PNPLNTTEFLKRASKFLGISPEVALETAEQLYLAGFTSYPRTETNKYADDFDFKSLVFDF 338
Query: 350 -RQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDG-----DAWRL 403
RQ+E P +LS I KD DHPPI P + A R ++ A +
Sbjct: 339 ARQKEYKP----FAESILSAPIVPKNGEKDAHDHPPIHPIRAAARGEVSSAVNIPQAAEV 394
Query: 404 YDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPD 463
YD I RHF+ L V+ + V +E F L PG+ V + K++ +P
Sbjct: 395 YDLIARHFLANLMPAAVFEKTHLHLQVKEEPFDSSGTVLKDPGWLEVYPFENKKDKLLPF 454
Query: 464 FKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV 523
+ + + ++ + + KT+PP LTE+EL++LM++HGIGT A+ P HI +R Y
Sbjct: 455 VEEKEKVDVKKLSNTKSKTSPPKKLTEAELLTLMDRHGIGTKATAPTHIETNKKRGYFE- 513
Query: 524 TSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
G+ + G L+ G LV P +RS
Sbjct: 514 NKGKTISILDTGFTLMEGLSLSVPILVRPDIRS 546
>gi|156836960|ref|XP_001642518.1| hypothetical protein Kpol_340p7 [Vanderwaltozyma polyspora DSM
70294]
gi|156113057|gb|EDO14660.1| hypothetical protein Kpol_340p7 [Vanderwaltozyma polyspora DSM
70294]
Length = 650
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 180/532 (33%), Positives = 276/532 (51%), Gaps = 37/532 (6%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+MG+DF + W K ELF P + + K+ + EA++ +FL++
Sbjct: 57 MTSVAGHLMGIDFPNDRYGWGKCPVHELFDAPLLQVYDKNQKKIADNIKKEARNADFLMI 116
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I +E+ + + + ++RA FS + I A N + ++
Sbjct: 117 WTDCDREGEYIGWEIFQEAKKGNRRLNEDQMFRANFSHLERSHILYAARNPRRLDMNSVN 176
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKY-----------GDLDASLISYGPCQTPTLGFC 221
+V+ R E+DLR G FTR T + K + +ISYG CQ PTLGF
Sbjct: 177 AVETRMEIDLRAGVTFTRLLTDTMKNKVSATIQMNSGPNAKKENVVISYGTCQFPTLGFV 236
Query: 222 VERHDKIRTFKPEPYWLLDLTL----NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEK--E 275
V+R+++IR F PE +W + L + G + W RGHIFD+ T F++ +
Sbjct: 237 VDRYERIRHFIPEEFWHIQLQIENKDKNGGEFTTFQWERGHIFDRLTVLTFYEVCLELAG 296
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
V+D++S SK +P L TVEL + + L + ++ AE+LY +G++SYPRTE
Sbjct: 297 NQAKVIDLKSKPTSKYRPLPLTTVELQKNCARFLRLNAKQSLDAAEKLYQKGFISYPRTE 356
Query: 336 TTQYPENFDLVAVLRQQ-------ESSPDWGDHVREVLSN--GISK---PRKG-KDVGDH 382
T +P+ +L +++ +Q SP W + +++S+ G +K PR G D H
Sbjct: 357 TDIFPQTMNLKSLVEKQAQLDQGNHRSP-WAAYAEQLISDAPGTNKFKFPRSGTHDDKAH 415
Query: 383 PPITP--TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
PPI P + A T + +Y+Y+VRHF+ D A E FT
Sbjct: 416 PPIHPIISLGAKATNITPVERSVYEYVVRHFLACCSEDAKGLSTTLTLDWAGEKFTASGL 475
Query: 441 YLLHPGFTGVMTWSAMKN-ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
+L F V W+ ++ + +P + ++ I +M KT+PP +TESELISLM+
Sbjct: 476 VVLERNFLDVYPWAKWESTKQLPRLEMNEICTIGKAEMKSGKTSPPKPMTESELISLMDV 535
Query: 500 HGIGTDASIPVHINNICQRNYV-TVTSGRR--LVPTSLGIVLVHGYQKIDRE 548
+GIGTDA+I HI I R Y+ + SG+ L PT+LGI LVHG+++I E
Sbjct: 536 NGIGTDATIAEHIEKIQVRKYIKSEKSGKETYLQPTTLGIALVHGFEEIGLE 587
>gi|151941072|gb|EDN59452.1| DNA topoisomerase III [Saccharomyces cerevisiae YJM789]
gi|349579943|dbj|GAA25104.1| K7_Top3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 656
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 175/537 (32%), Positives = 268/537 (49%), Gaps = 41/537 (7%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ G+DF+ + W K ELF P + + K+ + + EA++ ++L++
Sbjct: 58 MTSVAGHLTGIDFSHDSHGWGKCAIQELFDAPLNEIMNNNQKKIASNIKREARNADYLMI 117
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I +E+ + + + V+RA FS + + I A N + ++
Sbjct: 118 WTDCDREGEYIGWEIWQEAKRGNRLIQNDQVYRAVFSHLERQHILNAARNPSRLDMKSVH 177
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDL----------------DASLISYGPCQTP 216
+V R E+DLR G FTR T+ + K + D+ ++SYG CQ P
Sbjct: 178 AVGTRIEIDLRAGVTFTRLLTETLRNKLRNQATMTKDGAKHRGGNKNDSQVVSYGTCQFP 237
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTLNL--NGVAVSVTWSRGHIFDKSTCNVFFKA-VE 273
TLGF V+R ++IR F PE +W + L + NG + W RGH+FD+ + F++ +E
Sbjct: 238 TLGFVVDRFERIRNFVPEEFWYIQLVVENKDNGGTTTFQWDRGHLFDRLSVLTFYETCIE 297
Query: 274 KEKHVT-VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYP 332
+V VVD++S +K +P L TVEL + + L + ++ AE+LY +G++SYP
Sbjct: 298 TAGNVAQVVDLKSKPTTKYRPLPLTTVELQKNCARYLRLNAKQSLDAAEKLYQKGFISYP 357
Query: 333 RTETTQYPENFDLVAVLRQQE--------SSPDWGDHVREVL-------SNGISKPRKGK 377
RTET +P DL +++ +Q W + +L +N PR G
Sbjct: 358 RTETDTFPHAMDLKSLVEKQAQLDQLAAGGRTAWASYAASLLQPENTSNNNKFKFPRSGS 417
Query: 378 -DVGDHPPITP-TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMF 435
D HPPI P L + R+Y+Y+ RHF+ D A E F
Sbjct: 418 HDDKAHPPIHPIVSLGPEANVSPVERRVYEYVARHFLACCSEDAKGQSTTLVLDWAAERF 477
Query: 436 TMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
+ +L F V W+ + + +P + L+ I +M T PP +TESELI
Sbjct: 478 SASGLVVLERNFLDVYPWARWETTKQLPRLEMNALVDIAKAEMKAGTTAPPKPMTESELI 537
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYV---TVTSGRRLVPTSLGIVLVHGYQKIDRE 548
LM+ +GIGTDA+I HI+ I RNYV V L PT+LG+ LVHG++ I E
Sbjct: 538 LLMDTNGIGTDATIAEHIDKIQVRNYVRSEKVGKETYLQPTTLGVSLVHGFEAIGLE 594
>gi|327293864|ref|XP_003231628.1| DNA topoisomerase III [Trichophyton rubrum CBS 118892]
gi|326466256|gb|EGD91709.1| DNA topoisomerase III [Trichophyton rubrum CBS 118892]
Length = 632
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 162/486 (33%), Positives = 253/486 (52%), Gaps = 9/486 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH++ +F +Y +W DP LF P E ++ + + A+ + L
Sbjct: 2 MTSVLGHLLSYEFEPRYKSWTSCDPSVLFDAPIEVFVSSDSEPIADNIKRHARRADVLFN 61
Query: 113 WLDCDKEGENICFEV--MEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
W DCD+EGE+I E+ + A +Q + + TV RA F I I A+ V + +
Sbjct: 62 WTDCDREGEHIDTEIRSVAAQSNQALVRASGTV-RAYFFNIERTHIIHAVHCPVNLDEAQ 120
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQG--KYGDLDAS--LISYGPCQTPTLGFCVERHD 226
A +V +R ELDLR+G +FTR+ T + + G+L + LISYG CQ PTLGF ER+
Sbjct: 121 ANAVASRIELDLRVGASFTRHLTLSLRPILQRGNLSEACQLISYGSCQFPTLGFIAERYW 180
Query: 227 KIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSS 286
++R F PEP+W + L G V+ +W+R H+FD+S ++ ++ ++ V V+++
Sbjct: 181 RVRNFIPEPFWSIKLMHQKAGARVNFSWARKHLFDRSIADILYERCLDSQNAQVQKVKTT 240
Query: 287 TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLV 346
SK KP L T+EL + S GM +Q+AE+LY +G++SYPRTET Q+ DL
Sbjct: 241 PTSKWKPLPLTTLELQKCGSRFFGMNSQKVLQLAEKLYQKGWISYPRTETDQFDRGMDLR 300
Query: 347 AVLRQQESSPDWGDHVREVL-SNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLY 404
++++Q W D+ ++ G S PR G + HPPI P L + R++
Sbjct: 301 GLVQKQAQGGRWADYATALVEGGGFSWPRNGHNNDKAHPPIHPVNFVNPATLSHEEQRVH 360
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
++I+R F+ D ++ E F +L + V + N+ +P F
Sbjct: 361 EFIIRRFLACCSKDAQGSKTDISILYGPEKFQASGLVILEHNYLDVYVYDRWSNQELPTF 420
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
G++ + E K +PP YLTE +L++LM +GIGTDA++ HI I R YV
Sbjct: 421 IEGEVFEPTEAMLSEGKISPPGYLTEPDLLALMNANGIGTDATMADHIVTIIDRQYVEAR 480
Query: 525 SGRRLV 530
+ R V
Sbjct: 481 AQPRQV 486
>gi|190405298|gb|EDV08565.1| DNA topoisomerase III [Saccharomyces cerevisiae RM11-1a]
gi|256271738|gb|EEU06775.1| Top3p [Saccharomyces cerevisiae JAY291]
gi|259148217|emb|CAY81464.1| Top3p [Saccharomyces cerevisiae EC1118]
gi|323332349|gb|EGA73758.1| Top3p [Saccharomyces cerevisiae AWRI796]
gi|323336488|gb|EGA77755.1| Top3p [Saccharomyces cerevisiae Vin13]
gi|323347440|gb|EGA81711.1| Top3p [Saccharomyces cerevisiae Lalvin QA23]
gi|365764070|gb|EHN05595.1| Top3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 656
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 175/537 (32%), Positives = 268/537 (49%), Gaps = 41/537 (7%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ G+DF+ + W K ELF P + + K+ + + EA++ ++L++
Sbjct: 58 MTSVAGHLTGIDFSHDSHGWGKCAIQELFDAPLNEIMNNNQKKIASNIKREARNADYLMI 117
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I +E+ + + + V+RA FS + + I A N + ++
Sbjct: 118 WTDCDREGEYIGWEIWQEAKRGNRLIQNDQVYRAVFSHLERQHILNAARNPSRLDMKSVH 177
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDL----------------DASLISYGPCQTP 216
+V R E+DLR G FTR T+ + K + D+ ++SYG CQ P
Sbjct: 178 AVGTRIEIDLRAGVTFTRLLTETLRNKLRNQATMTKDGAKHRGGNKNDSQVVSYGTCQFP 237
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTLNL--NGVAVSVTWSRGHIFDKSTCNVFFKA-VE 273
TLGF V+R ++IR F PE +W + L + NG + W RGH+FD+ + F++ +E
Sbjct: 238 TLGFVVDRFERIRNFVPEEFWYIQLVVENKDNGGTTTFQWDRGHLFDRLSVLTFYETCIE 297
Query: 274 KEKHVT-VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYP 332
+V VVD++S +K +P L TVEL + + L + ++ AE+LY +G++SYP
Sbjct: 298 TAGNVAQVVDLKSKPTTKYRPLPLTTVELQKNCARYLRLNAKQSLDAAEKLYQKGFISYP 357
Query: 333 RTETTQYPENFDLVAVLRQQE--------SSPDWGDHVREVL-------SNGISKPRKGK 377
RTET +P DL +++ +Q W + +L +N PR G
Sbjct: 358 RTETDTFPHAMDLKSLVEKQAQLDQLAAGGRTAWASYAASLLQPENTSNNNKFKFPRSGS 417
Query: 378 -DVGDHPPITP-TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMF 435
D HPPI P L + R+Y+Y+ RHF+ D A E F
Sbjct: 418 HDDKAHPPIHPIVSLGPEANVSPVERRVYEYVARHFLACCSEDAKGQSTTLVLDWAVERF 477
Query: 436 TMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
+ +L F V W+ + + +P + L+ I +M T PP +TESELI
Sbjct: 478 SASGLVVLERNFLDVYPWARWETTKQLPRLEMNALVDIAKAEMKAGTTAPPKPMTESELI 537
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYV---TVTSGRRLVPTSLGIVLVHGYQKIDRE 548
LM+ +GIGTDA+I HI+ I RNYV V L PT+LG+ LVHG++ I E
Sbjct: 538 LLMDTNGIGTDATIAEHIDKIQVRNYVRSEKVGKETYLQPTTLGVSLVHGFEAIGLE 594
>gi|6323263|ref|NP_013335.1| DNA topoisomerase 3 [Saccharomyces cerevisiae S288c]
gi|136001|sp|P13099.1|TOP3_YEAST RecName: Full=DNA topoisomerase 3; AltName: Full=DNA topoisomerase
III
gi|173002|gb|AAA35161.1| DNA topoisomerase [Saccharomyces cerevisiae]
gi|609366|gb|AAB67406.1| Top3p: DNA Topoisomerase III [Saccharomyces cerevisiae]
gi|285813654|tpg|DAA09550.1| TPA: DNA topoisomerase 3 [Saccharomyces cerevisiae S288c]
gi|392297742|gb|EIW08841.1| Top3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 656
Score = 284 bits (727), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 175/537 (32%), Positives = 268/537 (49%), Gaps = 41/537 (7%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ G+DF+ + W K ELF P + + K+ + + EA++ ++L++
Sbjct: 58 MTSVAGHLTGIDFSHDSHGWGKCAIQELFDAPLNEIMNNNQKKIASNIKREARNADYLMI 117
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I +E+ + + + V+RA FS + + I A N + ++
Sbjct: 118 WTDCDREGEYIGWEIWQEAKRGNRLIQNDQVYRAVFSHLERQHILNAARNPSRLDMKSVH 177
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDL----------------DASLISYGPCQTP 216
+V R E+DLR G FTR T+ + K + D+ ++SYG CQ P
Sbjct: 178 AVGTRIEIDLRAGVTFTRLLTETLRNKLRNQATMTKDGAKHRGGNKNDSQVVSYGTCQFP 237
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTLNL--NGVAVSVTWSRGHIFDKSTCNVFFKA-VE 273
TLGF V+R ++IR F PE +W + L + NG + W RGH+FD+ + F++ +E
Sbjct: 238 TLGFVVDRFERIRNFVPEEFWYIQLVVENKDNGGTTTFQWDRGHLFDRLSVLTFYETCIE 297
Query: 274 KEKHVT-VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYP 332
+V VVD++S +K +P L TVEL + + L + ++ AE+LY +G++SYP
Sbjct: 298 TAGNVAQVVDLKSKPTTKYRPLPLTTVELQKNCARYLRLNAKQSLDAAEKLYQKGFISYP 357
Query: 333 RTETTQYPENFDLVAVLRQQE--------SSPDWGDHVREVL-------SNGISKPRKGK 377
RTET +P DL +++ +Q W + +L +N PR G
Sbjct: 358 RTETDTFPHAMDLKSLVEKQAQLDQLAAGGRTAWASYAASLLQPENTSNNNKFKFPRSGS 417
Query: 378 -DVGDHPPITP-TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMF 435
D HPPI P L + R+Y+Y+ RHF+ D A E F
Sbjct: 418 HDDKAHPPIHPIVSLGPEANVSPVERRVYEYVARHFLACCSEDAKGQSMTLVLDWAVERF 477
Query: 436 TMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
+ +L F V W+ + + +P + L+ I +M T PP +TESELI
Sbjct: 478 SASGLVVLERNFLDVYPWARWETTKQLPRLEMNALVDIAKAEMKAGTTAPPKPMTESELI 537
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYV---TVTSGRRLVPTSLGIVLVHGYQKIDRE 548
LM+ +GIGTDA+I HI+ I RNYV V L PT+LG+ LVHG++ I E
Sbjct: 538 LLMDTNGIGTDATIAEHIDKIQVRNYVRSEKVGKETYLQPTTLGVSLVHGFEAIGLE 594
>gi|171186180|ref|YP_001795099.1| DNA topoisomerase type IA central domain-containing protein
[Pyrobaculum neutrophilum V24Sta]
gi|170935392|gb|ACB40653.1| DNA topoisomerase type IA central domain protein [Pyrobaculum
neutrophilum V24Sta]
Length = 604
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 181/518 (34%), Positives = 268/518 (51%), Gaps = 36/518 (6%)
Query: 55 SVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANE-------AKDC 107
+ GHIM DFT++ N W + P ELF ATP L AN AK
Sbjct: 47 GLSGHIMDYDFTARENVWTWIPPEELF-------RATPVLVFRPETANYVKALRSLAKKA 99
Query: 108 EFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPN 167
E + L LD D EGE I +E V+ +N ++R RF+A+T +D+++A K +
Sbjct: 100 ERVYLALDADVEGEAIAYEAALVVKL---VNRRAEIYRVRFNAVTYRDVRSAFQKPTKLD 156
Query: 168 IFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDK 227
+ + V R ++DL +G FTR+ T + +SYGPCQTP LG V R +
Sbjct: 157 LRQVEKVFTRMQIDLTLGAVFTRFLTLTVRNSLER--GRFLSYGPCQTPVLGIVVTRELQ 214
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
R FKPE Y+++ + + G AV + S + +V++ T V Q +
Sbjct: 215 RRNFKPEKYYVIKALVEIGGHAVEMA-STERFKTRREAETAAASVKRGVVKTAVYRQHAV 273
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
+ P+ L TVEL R AS LG+ A+ AE LY GY+SYPRTETT YP DL
Sbjct: 274 QP---PEPLETVELERRASRWLGISSKKALDTAEELYRAGYISYPRTETTIYPSTLDLRE 330
Query: 348 VLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQ-------LDGDA 400
VL++ + + G + E+L G R D G HPPI PT+ AT+ + L A
Sbjct: 331 VLKEL-AGGEHGPYAEELLKRGFKPTRGDSDDGAHPPIYPTRGATQGEIYKVFGKLGRQA 389
Query: 401 WRLYDYIVRHFIGTLCG-DLVYTQK-VAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKN 458
W +YD +VRHF+ TL LV Q+ VA F + E + + G+ + W ++
Sbjct: 390 WAIYDLVVRHFLATLSPPALVEKQRIVATFGGVE--LEAEGQRTIEEGYWRIYPWERQRD 447
Query: 459 ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQR 518
+ +P + G+ V++VER+T PP ++ESEL++LM+K+GIGTDA++ HI+ +R
Sbjct: 448 KPLPRVEAGEAAKAIRVEVVERETEPPPQMSESELLALMKKYGIGTDATMQDHIHTNVKR 507
Query: 519 NYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
Y+ + G + +PT LG L + EL+EPT+R+
Sbjct: 508 GYMRLQRG-KCIPTKLGEALATALFQYAPELIEPTVRA 544
>gi|365759377|gb|EHN01167.1| Top3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 601
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 182/540 (33%), Positives = 275/540 (50%), Gaps = 45/540 (8%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ G+DF+ + W K ELF P ++ + K+ + + EAK+ ++L++
Sbjct: 1 MTSVAGHLTGIDFSHDSHGWGKCAIQELFDAPLDEIMNNNQKKIASNIKREAKNADYLMI 60
Query: 113 WLDCDKEGENICFEV-MEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE I +EV EA R I + V+RA FS + + I A N + ++
Sbjct: 61 WTDCDREGEYIGWEVWQEAKRGNRRIQDDQ-VYRAVFSHLERQHILHAARNPSRLDMKSV 119
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKY----------------GDLDASLISYGPCQT 215
++V R E+DLR G FTR T+ + K G D+ ++SYG CQ
Sbjct: 120 QAVGTRIEIDLRAGVTFTRLLTETLRSKLRTQNATANGGGKNRGGGKNDSQVVSYGTCQF 179
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNL--NGVAVSVTWSRGHIFDKSTCNVFFKA-V 272
PTLGF V+R ++IR F PE +W + L ++ +G + W RGH+FD+ + F++ +
Sbjct: 180 PTLGFVVDRFERIRNFVPEEFWYIQLVVDNKDSGGTTTFQWDRGHLFDRQSVLTFYETCI 239
Query: 273 EKEKHVT-VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSY 331
E V VVD++S SK +P L TVEL + S L + ++ AE+LY +G++SY
Sbjct: 240 ETAGGVAKVVDLKSKPTSKYRPLPLTTVELQKNCSRYLRLNAKQSLDAAEKLYQKGFISY 299
Query: 332 PRTETTQYPENFDLVAVLRQQE--------SSPDWGDHVREVL---------SNGISKPR 374
PRTET +P+ L +++ +Q W + +L +N PR
Sbjct: 300 PRTETDTFPQAMHLKSLVEKQAQLDQPGAGGKTAWASYAASLLLPESASGNNTNRFQLPR 359
Query: 375 KGK-DVGDHPPITP-TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVAD 432
G D HPPI P L + R+Y+Y+ RHF+ D A
Sbjct: 360 GGSHDDKAHPPIHPIVSLGPDANVSPVERRVYEYVARHFLACCSEDAKGQSTTLVLDWAG 419
Query: 433 EMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTES 491
E F+ +L F V W+ + + +P L+ I +M T PP +TES
Sbjct: 420 ERFSSSGLVVLQRNFLDVYPWARWETTKQLPRLDMDALVDIAKAEMKVGTTAPPKPMTES 479
Query: 492 ELISLMEKHGIGTDASIPVHINNICQRNYV-TVTSGRR--LVPTSLGIVLVHGYQKIDRE 548
ELI LM+ +GIGTDA+I HI+ I RNYV + +G+ L+PT+LG+ LVHG++ I E
Sbjct: 480 ELIILMDANGIGTDATIAEHIDKIQVRNYVRSEKAGKETYLLPTTLGVSLVHGFEAIGLE 539
>gi|294495508|ref|YP_003542001.1| DNA topoisomerase [Methanohalophilus mahii DSM 5219]
gi|292666507|gb|ADE36356.1| DNA topoisomerase [Methanohalophilus mahii DSM 5219]
Length = 776
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 166/512 (32%), Positives = 258/512 (50%), Gaps = 16/512 (3%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
+K+ + GHI DF Y +W +DP L + K K + AK + +
Sbjct: 45 YKIIGLAGHITSYDFDPAYRDWKAIDPAVLLTADPIKN--ITKKNYERAVRQLAKQADSI 102
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
VL D D+EGENI FE + + V RARFS+++ +++ A NLV+P+
Sbjct: 103 VLACDYDREGENIGFEARDIALQVKKV----PVKRARFSSLSANEVQKAFNNLVEPDTNL 158
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
A S D RQ LDLR+G AFTR+ T + +++S GPCQTPT GF ER IR
Sbjct: 159 ALSADTRQILDLRMGAAFTRFMT--LAVREEAYTKNILSIGPCQTPTCGFVYEREKTIRD 216
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
F+PE +W ++ +G+I D ++ ++ + V + K
Sbjct: 217 FQPEDFWKIEAVFQAGSSEFEGVHRKGNIRDVELAKKIYEKLQGTREAIVFRLNIKEKQI 276
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
P LNT E ++ AS L + P A++IAE+LY G++SYPRTET +YPE+ D ++L+
Sbjct: 277 NPPYPLNTNEFLKRASKFLDISPEKALEIAEQLYLAGFISYPRTETNRYPEDHDFKSMLK 336
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKLATRTQLDG-----DAWRLY 404
++ +L +S PR GK G DHPPI P K + Q+ ++W++Y
Sbjct: 337 NLLRIDEYAPFAENLLKTTVS-PRNGKKDGHDHPPIHPIKAVSEKQIKNAVKLDNSWKVY 395
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
D IVRHF+ L ++ + + V DE F + + G+ V + K + +P
Sbjct: 396 DLIVRHFLANLMDPALFEKTHMEVHVKDEPFDCKGSVMKSEGWKQVYPFEISKEKLLPHV 455
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
+ GD + + + + +TTPP LTE+EL++LM+KHGIGT A+ P HI +R Y +
Sbjct: 456 QEGDKVAVNKLTNTKSQTTPPKRLTEAELLTLMDKHGIGTKATAPSHIETNKKRGYFEI- 514
Query: 525 SGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
G+ + G L+ L++P +R+
Sbjct: 515 KGKTISMLDTGFNLMDALGVSVPILIQPEIRA 546
>gi|156037882|ref|XP_001586668.1| hypothetical protein SS1G_12655 [Sclerotinia sclerotiorum 1980]
gi|154698063|gb|EDN97801.1| hypothetical protein SS1G_12655 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 670
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 166/473 (35%), Positives = 243/473 (51%), Gaps = 8/473 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELF-SCPTEKREATPKLKLPAFLANEAKDCEFLV 111
MTSV GH+ LD + +W P LF P + A K + + ++A+ L
Sbjct: 57 MTSVSGHLTSLDVAPSHRSWTDPPPKSLFFEAPVIESIAEDKKVIAQNIESQARGARALF 116
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLVKPNIFE 170
+W DCD+EGE+I EV R Q +P+ V RARFS I + A + V + +
Sbjct: 117 IWTDCDREGEHIGGEV----RDQALKGNPRIEVKRARFSNIERAHVIQAAKHPVDLDQRQ 172
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
+V AR ELDLRIG AFTR+QT Q G L ++SYG CQ PTLGF V+R+ K++
Sbjct: 173 VDAVAARIELDLRIGYAFTRFQTTNLQKLGGPLADKMLSYGSCQFPTLGFVVDRYFKVKN 232
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
F PEP+W + +T + + V W R +FD++ + F+ K + VQ K
Sbjct: 233 FVPEPFWSIKITHSREDMNVIFNWKRNRLFDRAVVIILFERCIAAKFGKITKVQEKPTKK 292
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
KP L TVEL + AS L M AM AE LY +G++SYPRTET ++ + +L A++
Sbjct: 293 WKPLPLTTVELQKAASRWLHMNSQMAMTAAESLYNKGFISYPRTETDRFDKGMNLRALVE 352
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVR 409
+Q WG + +++ G PR G+ D HPPI P T L + R+Y+++VR
Sbjct: 353 KQIQDNRWGQFAQNLINGGFRWPRDGRNDDKAHPPIHPVIYVAPTALKPEEARIYEFVVR 412
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES-IPDFKPGD 468
F+ D + +E+F +L + V + + + +P F G+
Sbjct: 413 RFLACCSEDAKGQATDVELEYGNEIFQTHGLVVLEKNYLDVYIYEKWNSSTPLPKFALGE 472
Query: 469 LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
+ + KTT P YLTE +LI+LM+ +GIGTDA++ HI I R YV
Sbjct: 473 SFEPDEAMITDGKTTAPGYLTEPDLIALMDANGIGTDATMAEHIAKIKDREYV 525
>gi|50556688|ref|XP_505752.1| YALI0F22495p [Yarrowia lipolytica]
gi|49651622|emb|CAG78563.1| YALI0F22495p [Yarrowia lipolytica CLIB122]
Length = 620
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 180/523 (34%), Positives = 265/523 (50%), Gaps = 26/523 (4%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ +F S+ + LF+ P + K + EA+ L++
Sbjct: 53 MTSVLGHLTDSEFVSEDARKFGYNAARLFTEPITTQVKADMRKCADNIVKEARHARKLLI 112
Query: 113 WLDCDKEGENICFE-VMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE I +E V EA++ NI V RA FS + + A +L + ++
Sbjct: 113 WTDCDREGEYIGWEIVQEAIKGNPNIE----VKRAIFSDLEKTHVHQAARSLRELDMNAV 168
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V AR E+D R G AFTR QT Q K+ L S+ISYG CQ PTLGF V+R+ F
Sbjct: 169 NAVAARMEIDYRTGFAFTRLQTLHIQRKFAQLSKSVISYGSCQFPTLGFIVDRYLARENF 228
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDK-STCNVFFKAVEKEKHVTVVDVQSSTKSK 290
PEP+W + L + +++T RGHIFD+ S ++ + E V ++ S SK
Sbjct: 229 VPEPFWYMTLKCKVGRKQMALTSKRGHIFDRASAVALYARVCESGVLPKVTNLSSRPTSK 288
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
+P L TVEL+++ S L + +++AE LY Q ++SYPRTET Q+ + DL+ +L
Sbjct: 289 YRPLPLTTVELLKLGSKSLKLPSKTVLKLAEELYQQSFISYPRTETDQFSNDIDLMPLLA 348
Query: 351 QQESSPDWGDHVREVL-SNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIV 408
+Q++SP WGD+ ++ + S PR G+ + HPPI P + D R+Y+ I
Sbjct: 349 KQKNSPTWGDYASTLVDGDAFSPPRWGRHNDKAHPPIHPIAHCANFK-SNDHKRVYELIA 407
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV---MTWSAMKNESIPDFK 465
RHF+ D Q E F+ +L F + + W+ E +
Sbjct: 408 RHFMACCSKDAKGQQSNVDVDWYGEQFSATGLVILETNFLDIYPYVKWTG-SGELPAGLE 466
Query: 466 PGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS 525
G +PI + E TTPP LTE EL+SLM+ +GIGTDA++ HI+ + R Y+ +
Sbjct: 467 VGKELPIVESMLAEGTTTPPSLLTEPELLSLMDMNGIGTDATMAEHISTVVNREYILRCN 526
Query: 526 -------GRR----LVPTSLGIVLVHGYQKI--DRELVEPTMR 555
GR P+ LG LV GY I DR L +P +R
Sbjct: 527 AQGRPVQGRAKAEYFTPSPLGQALVEGYDSIGLDRSLTKPFIR 569
>gi|319921909|gb|ADV78573.1| DNA topoisomerase III alpha [Leishmania donovani]
Length = 947
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 181/518 (34%), Positives = 274/518 (52%), Gaps = 28/518 (5%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+M F N LFS P K + L A + LVL
Sbjct: 50 VTSVAGHLMEDQFPPNTKNRSTYPFQGLFSAPITKYVRADLEPVKKNLEALAGRADALVL 109
Query: 113 WLDCDKEGENICFEVMEAV---RHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
WLDCD+EGENICFEVM+ V R Q+ + RA FSA+T +D+ A+ NL P+
Sbjct: 110 WLDCDREGENICFEVMQVVQSKRPQVQVK------RAHFSALTARDLLNAVHNLKLPDKR 163
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
+ +V+ARQE+DLRIG AFTRYQT F+ + + ++S+GPCQ PTLGF V R+ + +
Sbjct: 164 LSDAVEARQEMDLRIGAAFTRYQTVKFRHLFAAIPG-VLSFGPCQFPTLGFVVRRYWQQQ 222
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFF----KAVEKEKHV-TVVDVQ 284
+ ++ TL L SRG ++D+ + + +A E H + +VQ
Sbjct: 223 ALSRKDFF----TLQLQHGDTKFHSSRGSMYDQVAATLIYEDMLQAAAAEGHKGRITNVQ 278
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP-ENF 343
+ P L TV + ++A++ L + M +AE LY +G +SYPRTET Y +
Sbjct: 279 QRPSHRRPPVPLATVVMQKLAATHLRIPSERCMTLAESLYQEGLISYPRTETDSYTFQES 338
Query: 344 DLVAVLRQQESSPDWGDHVREVLSNGISKPR----KGKDVGDHPPITPTKLATRTQLDGD 399
+L+ ++R Q ++ D ++ +L++ ++ R G D HPPI PTK TQ +
Sbjct: 339 ELLELVRVQTANADVAEYATAMLADIATRVRPPLRGGHDDKAHPPIHPTKAWNATQ--DE 396
Query: 400 AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
RLY+ IVRHF+ +L D V E+F+ +L G+ + + +
Sbjct: 397 RGRLYNLIVRHFLASLSPDAVAATTQVSAEFGGELFSTGGTTILQRGWLDIFPYERWNST 456
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
IP+++ GD +V + + T+ P +LTE+ LISLM+ +GIGTDA+I HI + R
Sbjct: 457 CIPNYQIGDTFQPTAVPLNKGCTSAPPHLTETHLISLMDSNGIGTDATIAQHIKTVLDRE 516
Query: 520 YVTVTSGRRLVPTSLGIVLVHGYQKID-RELVEPTMRS 556
YV G+ LVPT+LGI L Y+ + L++P +R+
Sbjct: 517 YVK-REGQSLVPTTLGIALASAYESLGLASLLQPQLRA 553
>gi|45200996|ref|NP_986566.1| AGL101Cp [Ashbya gossypii ATCC 10895]
gi|44985766|gb|AAS54390.1| AGL101Cp [Ashbya gossypii ATCC 10895]
gi|374109812|gb|AEY98717.1| FAGL101Cp [Ashbya gossypii FDAG1]
Length = 631
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 184/534 (34%), Positives = 273/534 (51%), Gaps = 29/534 (5%)
Query: 46 GDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAK 105
G+ MT+V GH+M DF +Y W+K DP ELF + TP ++ + E +
Sbjct: 50 GERCEVTMTAVAGHLMSQDFGPQYG-WNKCDPRELFGAEILE---TPTREIAENITRECR 105
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLV 164
E+L++W DCD+EGE I +E+ V Q N ++ + RA FS + + I A +
Sbjct: 106 GAEYLMIWTDCDREGEAIGWEIAR-VAMQANTRLVRSRIHRAVFSHLGREHIMRAANSPS 164
Query: 165 KPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKY-GDLDAS------LISYGPCQTPT 217
+ ++ +V AR E+DLR G AFTR T + K D+ A+ LISYG CQ PT
Sbjct: 165 QIDMNAVDAVKARSEIDLRAGYAFTRLLTATLRAKVEQDMPAANEKKRALISYGTCQFPT 224
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVA--VSVTWSRGHIFDKSTCNVFFK-AVEK 274
LGF V+R+++I+ F E +W L L + A V+ +W RGH+FD+ ++ +E
Sbjct: 225 LGFVVDRYERIQNFVSEGFWYLQLLIEDPQCARKVTFSWDRGHLFDRLCVLCLYETCIEA 284
Query: 275 EKHVTVVD-VQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333
+ +V V + SK +P L TVEL + S L M ++ AE+LY +G++SYPR
Sbjct: 285 TGNKALVSSVTAKDTSKYRPLPLTTVELQKNCSKFLRMSAKQSLDAAEKLYQKGFISYPR 344
Query: 334 TETTQYPENFDLVAVLRQQESSPDWGDHVREVL----SNGISKPRKGK-DVGDHPPITPT 388
TET + + +L +++QQ WG + ++L SN PR+GK D HPPI P
Sbjct: 345 TETDVFSKQANLQGLVQQQTEHSQWGAYASKLLSGEGSNRFQWPREGKHDDQAHPPIHPV 404
Query: 389 KLAT-RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
A L D R+Y+Y+VRHF+ D K E F+ + F
Sbjct: 405 LCAQPDANLSVDEKRVYEYVVRHFLACCSQDAKGRSSKIKLKWHTEEFSATGLQVHEENF 464
Query: 448 TGVMTWSA-MKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDA 506
+ T+ +E +P + +M KT+PP Y+TESELI LM+ +GIGTDA
Sbjct: 465 LEIYTYQKWTSSEQLPTLPLNSQVEFAKAEMKSGKTSPPKYITESELIMLMDANGIGTDA 524
Query: 507 SIPVHINNICQRNYVTV---TSGRRLVPTSLGIVLVHGYQKIDRE--LVEPTMR 555
+I HI I +R Y+ + PT LG LVHG++ I E +P +R
Sbjct: 525 TIAEHIEKIQERQYIKAEGTAKNKVFKPTMLGRSLVHGFEDIGLEESFAKPFLR 578
>gi|119871906|ref|YP_929913.1| DNA topoisomerase [Pyrobaculum islandicum DSM 4184]
gi|119673314|gb|ABL87570.1| DNA topoisomerase [Pyrobaculum islandicum DSM 4184]
Length = 604
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 176/518 (33%), Positives = 264/518 (50%), Gaps = 36/518 (6%)
Query: 55 SVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWL 114
+ GHIM DFT++ N W + P ELF +K L + A+ E + L L
Sbjct: 47 GLSGHIMDYDFTARQNVWSWLPPEELFKTSPILVLREEAIKYVRALRSLARKAEEVYLAL 106
Query: 115 DCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSV 174
D D EGE I +EV VR +N ++R RF+A+T KDIK A N K ++ + V
Sbjct: 107 DADSEGEAISYEVALVVRL---VNKNVKIYRVRFNAVTYKDIKIAFQNPTKLDLKQVEKV 163
Query: 175 DARQELDLRIGCAFTRYQTKFFQGKYGDL--DASLISYGPCQTPTLGFCVERHDKIRTFK 232
+R ++DL +G FTR+ T + DL +SYGPCQTP LG V R + R FK
Sbjct: 164 FSRMQIDLTLGAVFTRFLTLTVR----DLLEKGQFLSYGPCQTPVLGIVVTRELQRRNFK 219
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT- 291
PE Y+++ + + G + ++ +V FK ++ + V + K+
Sbjct: 220 PEKYYVIKAVVEIRGYKIEMS-----------ADVRFKTRKEAEAVATTIKRGVVKAAIY 268
Query: 292 ------KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDL 345
P+ L TVEL R AS LG+ + IAE LY GY+SYPRTETT YP +L
Sbjct: 269 RPHYIQPPEPLETVELERRASRWLGINSKKTLDIAEELYRAGYISYPRTETTIYPPTLNL 328
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQL-------DG 398
+L Q+ + +V E+L G R D G HPPI PTK AT++++
Sbjct: 329 REIL-QELIRGEHSRYVEELLLRGFRPTRGDSDDGAHPPIYPTKGATKSEIYKTFGKIGD 387
Query: 399 DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKN 458
+AW +YD++VRHF+ TL ++ +E + + G+ + W +
Sbjct: 388 NAWAIYDFVVRHFLATLSPPAQVEKQKIVVDFGKIQLEVEGQRTIDEGYWRIYPWERQSD 447
Query: 459 ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQR 518
+P GD + V++VER+T PP ++ESEL++LM+K+GIGTDA++ HI +R
Sbjct: 448 RPLPRVYVGDEVHAIKVEVVERETEPPPPMSESELLALMKKYGIGTDATMQDHIYTNIKR 507
Query: 519 NYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
Y+ + G + +PT LG L + EL+EPT+R+
Sbjct: 508 GYMKLQKG-KCIPTKLGETLAITLFQYTPELIEPTVRA 544
>gi|343420008|emb|CCD19226.1| DNA topoisomerase III, putative, (fragment) [Trypanosoma vivax
Y486]
Length = 601
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 181/513 (35%), Positives = 266/513 (51%), Gaps = 21/513 (4%)
Query: 54 TSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLW 113
TSV H+M DF ++ NW L+LF+ K ++ L + + L LW
Sbjct: 4 TSVAWHLMNDDFPAQTKNWSSFPLLDLFTVGITKHVKPELEQVKRNLESLGRQFTTLALW 63
Query: 114 LDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARS 173
+DCD+EGENICFEVM V+ +N V RA FSA+T +D+ A+ NL PN + +
Sbjct: 64 MDCDREGENICFEVMSVVQ---TVNRQIEVCRAHFSALTRRDLFTAVHNLKTPNKALSDA 120
Query: 174 VDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKP 233
+ARQE+DLRIG F+R+QT F+ + D+ ++S+GPCQ PTLGF V R + R F P
Sbjct: 121 AEARQEIDLRIGAVFSRFQTIKFRDMFRDM-PRVLSFGPCQIPTLGFVVRRSWEQREFVP 179
Query: 234 EPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEK----HVTVVDVQSSTKS 289
E Y+ TL L+ + RG ++D+ + +A+++ V++V
Sbjct: 180 EEYF----TLALHHGQTVFSSCRGSMYDQIAATLVLEAMQESASEKPEAEVMEVVQRPNR 235
Query: 290 KTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP-ENFDLVAV 348
+ P L TV L ++A++ L + M E LY +GYVSYPRTET + + +L+ +
Sbjct: 236 RHPPVPLATVVLQKLAATHLRISSEQCMMWVESLYQEGYVSYPRTETDFFSLTDNELLEI 295
Query: 349 LRQQESSPDWGDHVREVLS---NGISKP-RKGKDVGDHPPITPTKLATRTQLDGDAWRLY 404
Q + + G +V +L N +P R G D HPPI PTKL + + LY
Sbjct: 296 AGLQSGNSEVGQYVSAMLGDRQNRFRRPLRGGHDDKAHPPIYPTKLMPSS--NDPRMPLY 353
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
+ IV HF+ + D V +E FT +L G+ V + + IP +
Sbjct: 354 NLIVGHFLACVSPDAVAATTSVTAVFGEEKFTTSGTAVLERGWLEVYPYERWHSTCIPAY 413
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
K G+ V + +TTPP LTE+ LI+LM+KHGI TDA+I HI + R YV
Sbjct: 414 KRGERFTPTVVNLERHRTTPPPNLTEANLIALMDKHGIVTDATIAQHIKTVLDREYVK-R 472
Query: 525 SGRRLVPTSLGIVLVHGYQKIDR-ELVEPTMRS 556
G LVPTSLG L Y+ + L++P +R+
Sbjct: 473 EGTSLVPTSLGNSLASVYEAVGLVSLLQPQLRA 505
>gi|254579749|ref|XP_002495860.1| ZYRO0C04642p [Zygosaccharomyces rouxii]
gi|238938751|emb|CAR26927.1| ZYRO0C04642p [Zygosaccharomyces rouxii]
Length = 650
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 186/573 (32%), Positives = 283/573 (49%), Gaps = 54/573 (9%)
Query: 27 PLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTE 86
P + G+C V MTSV GH+ G+DF ++ W K ELF P
Sbjct: 46 PFAQGTGSCQV--------------TMTSVAGHLTGIDFPNERYGWGKCRIDELFDAPIN 91
Query: 87 KREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEV-MEAVRHQININSPKTVWR 145
+ + K+ + EA++ FL++W DCD+EGE I +E+ EA ++ + S + ++R
Sbjct: 92 EVFDKNQKKIADNIRKEARNANFLMIWTDCDREGEYIGWEISREASKNNSRLTSNQ-IYR 150
Query: 146 ARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGK-----Y 200
A FS + + I A + ++ +V R E+DLR G FTR T+ + K
Sbjct: 151 AVFSHLERRHIIDAARRPQRLDMGSVNAVGTRMEIDLRAGVTFTRLLTETMRNKVSANTM 210
Query: 201 GDLD----------ASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL--NLNGV 248
G+ +++ISYG CQ PTLGF V+R ++IR F E +W + L + + NG+
Sbjct: 211 GNSQHNNNNRRKDVSTVISYGTCQFPTLGFVVDRFERIRNFIAEEFWYIQLEIESSENGM 270
Query: 249 AVSVTWSRGHIFDKSTCNVFFK-AVE-KEKHVTVVDVQSSTKSKTKPQALNTVELMRVAS 306
+ W RG++FD+ T F++ +E VVDV+S SK +P L TVEL + +
Sbjct: 271 -TAFAWERGNLFDRLTVFTFYENCIELAGNRAKVVDVKSRPTSKYRPLPLTTVELQKNCA 329
Query: 307 SGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ-----QESSPDWGDH 361
L M ++ AE+LY +G++SYPRTET +P+N +L +++ + QE W ++
Sbjct: 330 RFLKMNAKQSLDAAEKLYQKGFISYPRTETDTFPKNMNLRSLIEKQAQLGQEGRSVWANY 389
Query: 362 VREVL-----SNGISKPRKGK-DVGDHPPITP-TKLATRTQLDGDAWRLYDYIVRHFIGT 414
+++ SN PR G D HPPI P L + L ++Y+Y+ RHF+
Sbjct: 390 AEQLISSSPGSNKFKTPRSGSHDDKAHPPIHPIISLGRQANLSRVEHQVYEYVTRHFLAC 449
Query: 415 LCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQ 473
D E FT +L F V W+ + + +P + I
Sbjct: 450 CSEDAKGQSTTLTLDWGGERFTATGLVVLERNFLEVYPWAKWETTKRLPQLEINQECQIS 509
Query: 474 SVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV---TVTSGRRLV 530
+M T+PP +TESELI LM+ +GIGTDA+I HI I RNYV V L
Sbjct: 510 KARMKSGSTSPPKPMTESELIMLMDANGIGTDATIAEHIEKIQTRNYVRSEKVGKETYLQ 569
Query: 531 PTSLGIVLVHGYQKIDRE--LVEPTMRSAYRVQ 561
PT+LG+ LVHG++ I E +P R V+
Sbjct: 570 PTTLGVALVHGFEAIGLEDSFAKPFQRREMEVE 602
>gi|145591572|ref|YP_001153574.1| DNA topoisomerase [Pyrobaculum arsenaticum DSM 13514]
gi|145283340|gb|ABP50922.1| DNA topoisomerase [Pyrobaculum arsenaticum DSM 13514]
Length = 602
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 174/515 (33%), Positives = 256/515 (49%), Gaps = 30/515 (5%)
Query: 55 SVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWL 114
+ GH+M DFT++ N W + P ELF+ +K L A + L L
Sbjct: 47 GLSGHLMDFDFTARQNVWTWIPPEELFASQPLIVYRPETMKYIRALRTLAARAHEVYLAL 106
Query: 115 DCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSV 174
D D EGE I +E VR +N ++R RF+A+T ++I A N N+ V
Sbjct: 107 DADVEGEAIAYEAALLVRL---VNPRAKIYRVRFNAVTQREITNAFRNPTHINLRMVEKV 163
Query: 175 DARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPE 234
R ++DL +G FTR+ T ++ +SYGPCQTP LG V R + R FKPE
Sbjct: 164 FTRMQVDLTLGAVFTRFIT--LAVRHSLDRGQFLSYGPCQTPVLGIVVTRELQRRNFKPE 221
Query: 235 PYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQ 294
Y+++ + + G H + S F E E+ ++ + +P
Sbjct: 222 KYYVVKALVEIGG----------HRIEMSADVRFKTRKEAEEAAATINRGVVKAAVYRPH 271
Query: 295 ALN------TVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAV 348
+N TVEL R AS LG+ + IAE LY GY+SYPRTETT YP DL V
Sbjct: 272 HVNPPVPLETVELERRASRWLGINSKRTLDIAEELYRAGYISYPRTETTIYPPTLDLREV 331
Query: 349 LRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQ-------LDGDAW 401
L Q+ +S G + E++ G R D HPPI PT+ AT+ + L AW
Sbjct: 332 L-QELASGHLGSYADELMRRGFRPTRGDSDDRAHPPIYPTRAATKGEVAKAFGKLAPQAW 390
Query: 402 RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI 461
+YD++VRHF+ TL V ++ S E + ++ G+ + W ++ +
Sbjct: 391 AIYDFVVRHFLATLSPPAVVEKQKIIVSFGKLEMEAEGQLVVDEGYWRIYPWERQSSKPL 450
Query: 462 PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
P PGD V +VER+T PP +TESEL++LM+K+GIGTDA++ HI+ +R Y+
Sbjct: 451 PRVSPGDPARAVKVDVVERETEPPPQMTESELLALMKKYGIGTDATMQDHIHTNVRRGYM 510
Query: 522 TVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
+T G + +PT LGI L + +L+EPT+R+
Sbjct: 511 KITKG-KCIPTDLGIALATSLFQFAPQLIEPTVRA 544
>gi|367006322|ref|XP_003687892.1| hypothetical protein TPHA_0L01010 [Tetrapisispora phaffii CBS 4417]
gi|357526198|emb|CCE65458.1| hypothetical protein TPHA_0L01010 [Tetrapisispora phaffii CBS 4417]
Length = 651
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 180/534 (33%), Positives = 275/534 (51%), Gaps = 40/534 (7%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ G+DF ++ W K ELF P + + K+ + EA++ + L++
Sbjct: 57 MTSVAGHLTGVDFANERYGWGKCAIHELFDAPLSQTLDKNQKKIADNIKREARNADALMI 116
Query: 113 WLDCDKEGENICFEVM-EAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE I +E++ EA + ++N ++RA FS + I A N + ++
Sbjct: 117 WTDCDREGEYIGWEILIEAKKGNGSLNE-SNIYRAVFSHLERSHILHAARNPKRLDMNSV 175
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKY----------GDLDASLISYGPCQTPTLGFC 221
+V R E+DLR G +FTR T+ + K + +ISYG CQ PTLGF
Sbjct: 176 HAVGTRMEIDLRAGVSFTRLLTETMKPKICPPAVGPNRNKKKENIVISYGTCQFPTLGFV 235
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVT----WSRGHIFDKSTCNVFFK-AVEKEK 276
V+R ++IR F PE +W + L + ++ T W +GH+FD+ + F++ +E
Sbjct: 236 VDRFERIRNFIPEEFWYIQLQIANPDPNITTTTPFQWEKGHLFDRLSVLTFYELCIETAG 295
Query: 277 H-VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
+ V+D++S SK +P L TVEL + + L + ++ AE+LY +G++SYPRTE
Sbjct: 296 NKAKVIDLKSKPTSKYRPLPLTTVELQKNCARFLKINAKQSLDAAEKLYQKGFLSYPRTE 355
Query: 336 TTQYPENFDLVAVLRQQ---------ESSPDWGDHVREVLSNGI------SKPRKG-KDV 379
T +P+ DL ++ +Q SP W D+ + +LS+ I PR G D
Sbjct: 356 TDIFPKTMDLKKLVEKQAQLDQTNSSNRSP-WADYAKNLLSDNIEGHSQFQTPRAGTHDD 414
Query: 380 GDHPPITP-TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
HPPI P L + R+Y+Y+VRHF+ D T A E FT
Sbjct: 415 KAHPPIHPIIALGEHATITPVERRVYEYVVRHFLACCSEDGKGTSTTLILDWAGEKFTAT 474
Query: 439 AKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLM 497
+L F V W+ + + +P + L I + +M T+PP +TESELI LM
Sbjct: 475 GIVVLQRNFLDVYPWAKWETTKQLPRLEMNQLADIVTAEMRSGSTSPPKPMTESELIMLM 534
Query: 498 EKHGIGTDASIPVHINNICQRNYV---TVTSGRRLVPTSLGIVLVHGYQKIDRE 548
+ +GIGTDA+I HI I RNY+ V L PT+LGI LVHG++++ E
Sbjct: 535 DANGIGTDATIAEHIEKIQARNYIRPEKVGKESYLQPTTLGIALVHGFEEMGLE 588
>gi|315040584|ref|XP_003169669.1| hypothetical protein MGYG_07839 [Arthroderma gypseum CBS 118893]
gi|311345631|gb|EFR04834.1| hypothetical protein MGYG_07839 [Arthroderma gypseum CBS 118893]
Length = 671
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 170/563 (30%), Positives = 265/563 (47%), Gaps = 60/563 (10%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH++ +F ++ +W DP LF E + + + A+ + L +
Sbjct: 54 MTSVLGHLLSHEFEPRFKSWTSCDPSALFDAGIEVFIGSKSKPVADNIKRHARRADVLFI 113
Query: 113 WLDCDKEGENICFEV-MEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I ++ + A + + RA FS I I A N +A
Sbjct: 114 WTDCDREGEHIGTKIRLVAAQSNQALGRAGGTVRAHFSNIERTHIIHAAHRPADLNEAQA 173
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQG--KYGDLD--ASLISYGPCQTPTLGFCVERHDK 227
+V AR ELDLR+G +FTR+ T + G+L + LISYG CQ PTLGF VER+ +
Sbjct: 174 NAVAARIELDLRVGASFTRHLTLSLCPVLQRGNLSETSQLISYGSCQFPTLGFVVERYLR 233
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
+R F PEP+W + L G V +W+R H+FD+ T + ++ ++ V V++
Sbjct: 234 VRNFIPEPFWSIKLMHQKAGTKVKFSWARKHLFDRRTAVILYERCLTSQNAQVQKVKTIP 293
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
SK KP L T+EL + S GM +Q+AE+LY +G++SYPRTET ++ DL
Sbjct: 294 TSKWKPLPLTTLELQKCGSRFFGMDSQRVLQLAEKLYQKGWISYPRTETDRFDRGMDLRG 353
Query: 348 VLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDY 406
+ ++Q + W D+ ++ G S PR G + HPPI P T L + R++++
Sbjct: 354 LDQKQGARRRWADYATALVQGGFSWPRNGHNNDKAHPPIHPVNFVNPTTLSHEEQRVHEF 413
Query: 407 IVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKP 466
+VR F+ D + E F +L + V N+ +P F
Sbjct: 414 VVRLFLACCSKDAQGLKTEISILYGPETFHTSGLVILERNYLDVYIHDRWSNQELPPFIE 473
Query: 467 GDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV----- 521
G++ + E KT+PP YLTE +L++LM +GIGTDA++ HI I R YV
Sbjct: 474 GEVFEPTEAILGEGKTSPPGYLTEPDLLALMNANGIGTDATMADHIVTIIDRQYVEARAQ 533
Query: 522 -----------------------------------------------TVTSGRRLVPTSL 534
+T R +PT+L
Sbjct: 534 PRQARHGNDEEDSEELPAQTRGGNDRRDRGAVASRRGGWNSGAGRGGAITGVREFIPTTL 593
Query: 535 GIVLVHGYQKI--DRELVEPTMR 555
G+ LV G++ + + +L++P +R
Sbjct: 594 GVALVEGHENMGFETDLMKPFLR 616
>gi|443926203|gb|ELU44921.1| DNA topoisomerase type I [Rhizoctonia solani AG-1 IA]
Length = 3005
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 182/516 (35%), Positives = 259/516 (50%), Gaps = 50/516 (9%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
+ MT+V GH+ DF S +W+ DP +LF P E R + ++ L +EA+ + L
Sbjct: 2110 YTMTAVSGHLTEKDFGSALRSWNSCDPFQLFDAPIETRVSKDGERIERNLLSEARGAQML 2169
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITD-KDIKAAMWNLVKPNIF 169
++W DCD+EGENI EV EAV + N V RARFSAI + I A N V +
Sbjct: 2170 MIWTDCDREGENIGAEV-EAV--CLRSNPRIRVKRARFSAIIPARQIHHAAQNPVDLDRA 2226
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
+A +V+AR LDLR G AFTR QT Q ++ L LISYGPCQ PTLGF V R+++++
Sbjct: 2227 QADAVEARILLDLRYGAAFTRMQTLTLQPRFPQLQEGLISYGPCQFPTLGFVVSRYEQVQ 2286
Query: 230 TFKPEPYWLLDLTL----NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS 285
F PEP+W + L++ + + +W R H+F+ ++ + V V
Sbjct: 2287 AFVPEPFWYIHLSIVSPDADDEEETAFSWRRHHVFEFDVALALYEGTVENPTARVTKVTK 2346
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDL 345
K KP L TVEL + AS L M P A+ +AE+LY G++SYPRTET Q+ FD
Sbjct: 2347 KPTKKWKPLPLTTVELQKAASRLLHMTPKKALDVAEKLYNDGFLSYPRTETDQFDPAFDF 2406
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLY 404
+++ +Q PDWG + + G +PR G K+ HPPI PT A L G+A ++Y
Sbjct: 2407 DSLIAKQTVDPDWGGFAAGLQNGGFQRPRDGKKNDKAHPPIHPTAHA--GNLVGEAKKVY 2464
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
+Y+ R F+ D Q V DE F+ K + V + + +PDF
Sbjct: 2465 EYVARRFLACCSKDAEGFQTTVDVVVNDEEFSATGKR----NYLEVYKYDKWVGKHLPDF 2520
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV- 523
+ G M + TDA+I HI I R YV
Sbjct: 2521 QEGQ--------------------------EFMPR----TDATIAQHIQTIIDRQYVIAR 2550
Query: 524 --TSGRRLVPTSLGIVLVHGYQKI--DRELVEPTMR 555
S + LVP++LGI L+ GY +I D+ L +P +R
Sbjct: 2551 QEGSTKYLVPSTLGIGLIEGYNRIGFDKSLSKPLLR 2586
>gi|367016122|ref|XP_003682560.1| hypothetical protein TDEL_0F05380 [Torulaspora delbrueckii]
gi|359750222|emb|CCE93349.1| hypothetical protein TDEL_0F05380 [Torulaspora delbrueckii]
Length = 652
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 176/535 (32%), Positives = 262/535 (48%), Gaps = 42/535 (7%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ G+DF S W K + ELF P + + K+ + EA+ +FL++
Sbjct: 58 MTSVAGHLSGVDFQSDRYGWGKCNVQELFDAPVSEVLDKNQRKIAENIKKEAQKADFLMI 117
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I +E+ + V+RA FS + + I A N P + R
Sbjct: 118 WTDCDREGEYIGWEIFREANRGNRRLTEAVVYRAVFSHLERRHILQAARN---PQRLDMR 174
Query: 173 SVDA---RQELDLRIGCAFTRYQTKFFQGKYGDL----------------DASLISYGPC 213
SV+A R E+DLR G FTR T+ + K G D+++ISYG C
Sbjct: 175 SVNAVGTRMEIDLRAGVTFTRLLTETMRNKVGQSNGISRPANGSNANKKKDSTVISYGTC 234
Query: 214 QTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDK-STCNVFFKAV 272
Q PTLGF V+R ++IR F E +W + L + + W RGH+FD+ S ++ +
Sbjct: 235 QFPTLGFVVDRFERIRNFVSEEFWYIQLQVVSEQASTIFQWERGHLFDRLSVLAIYEACI 294
Query: 273 EKEKHVT-VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSY 331
E ++ V D++S SK +P L TVEL + S + ++ AE+LY +G++SY
Sbjct: 295 ETAGNIAKVSDLRSKPTSKYRPLPLTTVELQKNCSRFFKLNAKQSLDAAEKLYQKGFLSY 354
Query: 332 PRTETTQYPENFDLVAVLRQQE-------SSPDWGDHVREVL-----SNGISKPRKGK-D 378
PRTET +P+ DL ++ Q S W ++ +L SN PR G D
Sbjct: 355 PRTETDTFPDKMDLKGLVTNQAQLDQDNTSRSAWANYAANLLSDTPGSNKFKWPRSGSHD 414
Query: 379 VGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTM 437
HPPI P L + + ++Y+Y+ RHF+ D E FT
Sbjct: 415 DKAHPPIHPVISLGPQANVTPTERKIYEYVARHFLACCSEDAKGQSTTLTLDWGGEKFTA 474
Query: 438 EAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISL 496
+ F V W+ + + +P + ++ +M T+PP +TESELI L
Sbjct: 475 TGLVVFERNFLDVYPWAKWETTKQVPRLELNQECRLEKCEMRSGSTSPPKPMTESELIML 534
Query: 497 MEKHGIGTDASIPVHINNICQRNYV-TVTSGRR--LVPTSLGIVLVHGYQKIDRE 548
M+ +GIGTDA+I HI I RNY+ + +G+ L PT LG+ LVHG++ I E
Sbjct: 535 MDVNGIGTDATIAEHIEKIQVRNYIKSEKTGKETYLQPTILGVALVHGFEAIGLE 589
>gi|365992220|ref|XP_003672938.1| hypothetical protein NDAI_0L02110 [Naumovozyma dairenensis CBS 421]
gi|410730103|ref|XP_003671229.2| hypothetical protein NDAI_0G02110 [Naumovozyma dairenensis CBS 421]
gi|401780049|emb|CCD25986.2| hypothetical protein NDAI_0G02110 [Naumovozyma dairenensis CBS 421]
Length = 656
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 186/544 (34%), Positives = 272/544 (50%), Gaps = 55/544 (10%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ +DF W+K ELF+ P + K+ A + EA+ +FL++
Sbjct: 57 MTSVAGHLTSVDFRPDIYGWNKCRIDELFTAPLSTEMDNNQKKIAANIKREARYADFLMI 116
Query: 113 WLDCDKEGENICFEVM-EAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE I +E+ EA++ + + + V+RA FS + + + A +P +
Sbjct: 117 WTDCDREGEYIGWEIFQEALKGNSRLTNSQ-VYRANFSHLERRHVLNAA---RRPQRLDL 172
Query: 172 RSVD---ARQELDLRIGCAFTRYQTKFFQGKY-------------GDLDA------SLIS 209
+SVD AR ELDLR G FTR T + K G++ + ++IS
Sbjct: 173 KSVDAVGARIELDLRTGVTFTRLLTNTMKAKVETWNRSQTSISSNGNMSSRAKEPPTIIS 232
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLN--LNGVAVSVTWSRGHIFDKSTCNV 267
YG CQ PTLGF V+R+++I+ F E +W + L + +G + + W RGH+FD+ +
Sbjct: 233 YGACQFPTLGFVVDRYERIKHFVSEEFWYIQLVIKDPESGASTTFQWDRGHLFDRLSVLA 292
Query: 268 FFK-----AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAER 322
F++ A +K K VVD+ S SK +P L TVEL R + L + ++ AE+
Sbjct: 293 FYETCLETAGDKAK---VVDLISKPTSKYRPLPLTTVELQRNCARFLRLNAKKSLAAAEK 349
Query: 323 LYTQGYVSYPRTETTQYPENFDLVAVLR------QQESSPDWGDHVREVLSNGISK---- 372
LY +G+VSYPRTET +P+ DL +++R Q + W + +LS+ S
Sbjct: 350 LYQKGFVSYPRTETDIFPQAMDLQSLVRNRAQLDQSNNRTAWASYAEGLLSDDASNTNKF 409
Query: 373 --PRKG-KDVGDHPPITP-TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKF 428
PR G D HPPI P + L D R+Y+YIVRHF+ D
Sbjct: 410 RFPRSGTHDDKAHPPIHPVVSVGPNANLTPDEKRVYEYIVRHFLACCSEDAKGQSTTLTL 469
Query: 429 SVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDY 487
ADE F +L F V W+ + + +P + I +M T+PP
Sbjct: 470 DWADERFVASGLIVLERNFLDVYPWAKWETTKRLPRLEINQECEIGKAEMNFGHTSPPKP 529
Query: 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYV---TVTSGRRLVPTSLGIVLVHGYQK 544
+TESELI LM+ +GIGTDA+I HI I R Y+ V PT LGI LVHG++
Sbjct: 530 MTESELIMLMDANGIGTDATIADHIEKIQTRKYIKSEKVGKDTFFQPTVLGIALVHGFEA 589
Query: 545 IDRE 548
I E
Sbjct: 590 IGLE 593
>gi|406701616|gb|EKD04732.1| hypothetical protein A1Q2_00962 [Trichosporon asahii var. asahii
CBS 8904]
Length = 1818
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 182/525 (34%), Positives = 268/525 (51%), Gaps = 80/525 (15%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
F +TSV GH+ LD N L NEA+ + L
Sbjct: 56 FTVTSVLGHLTSLDMKRVETN----------------------------LKNEARRAQIL 87
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
++W DCD+EGE+I E+ E+V + N N TV RARFSAI I A + +
Sbjct: 88 MIWTDCDREGEHIGSEI-ESVCRRSNPNI--TVKRARFSAIIAAQIHQACRQAGNLDENQ 144
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL-DASLISYGPCQTPTLGFCVERHDKIR 229
A++V+AR ELDLRIG AFTR+ T+ Q + +L D L+SYGPCQ PTLGF V+++++++
Sbjct: 145 AKAVEARTELDLRIGAAFTRFLTQTLQIRVPELGDQKLVSYGPCQFPTLGFVVDQYNRVQ 204
Query: 230 TFKPEPYWLLDLTLNLNG-----VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQ 284
+F PE +W + +T + V W R H+FD +DV
Sbjct: 205 SFVPEQFWYISVTCERDSDDGETFKVEFKWRRNHLFD-------------------LDVA 245
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD 344
KP L TV+L + S LGM P +R+ +G++SYPRTET QY + FD
Sbjct: 246 VLLSDFRKPLPLTTVDLQQSGSRLLGMTP-------KRILDKGFLSYPRTETDQYDKAFD 298
Query: 345 LVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRL 403
+A++R+QE + RE+L PR G K+ HPPI PT A L+G+ ++
Sbjct: 299 FMALIRKQELN-------RELLDGAFQTPRNGRKNDKAHPPIHPTNGAQ--GLEGEERKV 349
Query: 404 YDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPD 463
Y+++ R F+ + + Q + +A E F + + V + + IPD
Sbjct: 350 YEFVTRRFLASCSKNAEGMQTTVEIEIAGEYFHASGVIVKARNYLEVYPYDKWNSNPIPD 409
Query: 464 FKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV 523
F+ G+ + E TT P+YLTE++L+ LM+K+GIGTDA+I HI I R YV
Sbjct: 410 FQEGEQFVPDECMLKEGVTTAPNYLTEADLVGLMDKNGIGTDATIADHIAKIIDREYVLT 469
Query: 524 TSGRR---LVPTSLGIVLVHGYQKI--DRELVEPTMR--SAYRVQ 561
+ ++ LVP+ LGI LV G+ I DR L +P +R + +R+Q
Sbjct: 470 KTQQKTKYLVPSMLGIGLVEGFNAIGFDRSLSKPHLRRETEHRMQ 514
>gi|401409598|ref|XP_003884247.1| putative DNA topoisomerase III alpha [Neospora caninum Liverpool]
gi|325118665|emb|CBZ54216.1| putative DNA topoisomerase III alpha [Neospora caninum Liverpool]
Length = 870
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 181/539 (33%), Positives = 271/539 (50%), Gaps = 34/539 (6%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
VH++ L TSV GH+M L+F S Y NW+ P +L+S P EK + +
Sbjct: 41 VHQFEFSLQNRSCTMLFTSVRGHLMSLEFASAYQNWNTTPPEDLYSAPVEKSISQDAGDV 100
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L + AK ++LVLWLDCD+EGENI FEV+ NS V+RA FSA+T D+
Sbjct: 101 QKNLVDLAKKAQWLVLWLDCDREGENIAFEVLSVCS---KANSRLKVFRAVFSALTKADL 157
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTP 216
+ A +L P+ ++ +VD R E+DLRIG +FTR+ T ++ + L + ISYGPCQ+P
Sbjct: 158 ERACRSLQAPDRNQSDAVDTRSEIDLRIGASFTRFLTMRYRTRV-KLPSPTISYGPCQSP 216
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTLN---------LNGVAVSVTWSRGHIFDKSTCNV 267
TLGF V R ++ F E YW + +T+N ++V TW R +FD+ V
Sbjct: 217 TLGFVVSRFVEVENFVREAYWTIRVTINKLDDEKGPNAPPLSVDFTWDRQRLFDQLAVLV 276
Query: 268 FFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQG 327
++ + TV DV+ + ++K +P L TVEL ++AS L M M IAE LY +G
Sbjct: 277 LYEMCLENPVATVTDVRGTERTKPRPVPLCTVELHKMASRKLRMSSAQCMSIAESLYQRG 336
Query: 328 YVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPIT 386
+SYPRTET + DL+A++R S WG + ++++ PR G +D HPPI
Sbjct: 337 IISYPRTETEVFSPTMDLLALIRVHTGSTAWGAYAQKLVEGDFLWPRDGARDDKAHPPIH 396
Query: 387 PTKLATRTQLDG-DAWR-------------LYDYIVRHFIGTLCGDLVYTQKVAKFSVAD 432
P KL R++ + D W+ LY++I RHF+ G + +
Sbjct: 397 PLKLMQRSEFEKEDEWKTKVNSGGLCTRLQLYEFITRHFLACCRGRISRHRPHRARETMA 456
Query: 433 EMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPI-----QSVKMVERKTTPPDY 487
++ A +L + V T A I + + + + V R P
Sbjct: 457 GGLSLRAVFLFDIQWICVWTVYAYIYIYININRRVNRHSCCWAHRRWMLCVPRTQGIPSL 516
Query: 488 LTESELI-SLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKI 545
T I S ++GIGTDA++ HI I R+Y + VPT LG+ L G++++
Sbjct: 517 GTFLLFIFSHGLQNGIGTDATMHDHIRTIQDRHYCYKNENMQFVPTDLGVALYQGFKRL 575
>gi|159152386|gb|ABW92701.1| topoisomerase 3 beta [Drosophila melanogaster]
Length = 266
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 136/223 (60%), Positives = 163/223 (73%), Gaps = 2/223 (0%)
Query: 335 ETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRT 394
ET QYP NFDL AVL + S D+G+ R +L + I PRKGKD GDHPPITP KL R+
Sbjct: 1 ETNQYPTNFDLPAVLHVLKPSADFGEEARSILGD-IQTPRKGKDAGDHPPITPMKLGNRS 59
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
D D WR+Y++I RHF+GT+ DL Y AK SV E F+ A L+ GFT VMTWS
Sbjct: 60 DFDRDTWRVYEFICRHFMGTVSKDLKYRVTTAKLSVGMETFSCTASVLIDAGFTKVMTWS 119
Query: 455 AM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
A K+E P F G + I V+++E +T PPDYLTESELI+LME+HGIGTDASIPVHIN
Sbjct: 120 AFGKDEPQPPFVQGTQVAINDVRLIESQTGPPDYLTESELITLMEEHGIGTDASIPVHIN 179
Query: 514 NICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
NICQRNYV + +GR+L+PT+LGIVLVHGYQKID ELV PTMR+
Sbjct: 180 NICQRNYVHIENGRKLMPTTLGIVLVHGYQKIDPELVLPTMRT 222
>gi|378755338|gb|EHY65365.1| hypothetical protein NERG_01811 [Nematocida sp. 1 ERTm2]
Length = 772
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 182/543 (33%), Positives = 274/543 (50%), Gaps = 34/543 (6%)
Query: 27 PLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTE 86
P + +N CSV + G + G TSV GH+ L+F K +W ++DP ELF
Sbjct: 27 PTKGLNKYCSVFRFDGEVEGARCQMVFTSVLGHLYSLEFERK-TSWTEIDPSELF----- 80
Query: 87 KREATPKLKLPAFLANEAK-------DCEFLVLWLDCDKEGENICFEVMEAVRHQININS 139
E K +P+ + K +C+ L++W DCD+EGENI +V V+ +I
Sbjct: 81 --EDKLKWSIPSTMEGVFKTIKQLSTECDMLIIWTDCDREGENIGMQVANVVKDRI---- 134
Query: 140 PKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGK 199
+ V RARFS ++ D+ AM NL NI E+++V++R E+DLRIG A TR QT Q
Sbjct: 135 -QRVKRARFSGLSRYDVMHAMENLGALNINESKAVESRIEIDLRIGAALTRLQTLQLQN- 192
Query: 200 YGDLDA-SLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGH 258
++A S+ISYG CQ PTLGF R + I F E W + + NG W RG
Sbjct: 193 --IIEAKSVISYGSCQIPTLGFICAREESIENFVEEKNWTIQADVQHNGEKGVFKWERGL 250
Query: 259 IFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMG-PHHAM 317
++D+ N+ AV + V +++ + K++P L TVEL + + G + H M
Sbjct: 251 VYDEEYVNIKLGAVSG-ADLIVSKIETKKRYKSRPWPLRTVELQKFFARGKSVANSHELM 309
Query: 318 QIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK 377
IAE LYT GY+SYPRTET +P NF+ + + G++ + L G+ P KG
Sbjct: 310 NIAESLYTSGYISYPRTETDAFPSNFNSKDPMAALKGDSVLGEYAKN-LKPGV--PSKGN 366
Query: 378 -DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFT 436
+ H PI P L + + L+G +Y+YI R F+ + +++ + E F
Sbjct: 367 HNDQAHTPIYP--LKSGSALNGKERSVYEYIARRFLACYSANAEGEEELIECQANGETFI 424
Query: 437 MEAKYLLHPGFTGVMTWSAMKN-ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELIS 495
+ + + V + + E K G +P K + T P +LTE+ELI+
Sbjct: 425 RKTLKVTKKNYLEVFIYEKWGDTEGDLGLKKGQKVPWTPSKK-DSHTEKPHFLTEAELIA 483
Query: 496 LMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMR 555
M+ +GIGTDA+I HI I +R YV V + + T LG L+ GY+ I + EP +R
Sbjct: 484 KMDGNGIGTDATIHDHIERIKERKYVEVVNKNSIKSTWLGRSLIKGYKSIGLTISEPQLR 543
Query: 556 SAY 558
+
Sbjct: 544 KEF 546
>gi|159152376|gb|ABW92696.1| topoisomerase 3 beta [Drosophila melanogaster]
gi|159152378|gb|ABW92697.1| topoisomerase 3 beta [Drosophila melanogaster]
gi|159152380|gb|ABW92698.1| topoisomerase 3 beta [Drosophila melanogaster]
gi|159152382|gb|ABW92699.1| topoisomerase 3 beta [Drosophila melanogaster]
gi|159152384|gb|ABW92700.1| topoisomerase 3 beta [Drosophila melanogaster]
gi|159152388|gb|ABW92702.1| topoisomerase 3 beta [Drosophila melanogaster]
gi|159152390|gb|ABW92703.1| topoisomerase 3 beta [Drosophila melanogaster]
gi|159152392|gb|ABW92704.1| topoisomerase 3 beta [Drosophila melanogaster]
gi|159152394|gb|ABW92705.1| topoisomerase 3 beta [Drosophila melanogaster]
gi|159152396|gb|ABW92706.1| topoisomerase 3 beta [Drosophila melanogaster]
gi|159152398|gb|ABW92707.1| topoisomerase 3 beta [Drosophila melanogaster]
gi|295867439|gb|ADG51438.1| CG3458 [Drosophila melanogaster]
gi|295867441|gb|ADG51439.1| CG3458 [Drosophila melanogaster]
gi|295867443|gb|ADG51440.1| CG3458 [Drosophila melanogaster]
gi|295867445|gb|ADG51441.1| CG3458 [Drosophila melanogaster]
gi|295867447|gb|ADG51442.1| CG3458 [Drosophila melanogaster]
gi|295867449|gb|ADG51443.1| CG3458 [Drosophila melanogaster]
gi|295867451|gb|ADG51444.1| CG3458 [Drosophila melanogaster]
gi|295867453|gb|ADG51445.1| CG3458 [Drosophila melanogaster]
gi|295867455|gb|ADG51446.1| CG3458 [Drosophila melanogaster]
gi|295867457|gb|ADG51447.1| CG3458 [Drosophila melanogaster]
gi|295867459|gb|ADG51448.1| CG3458 [Drosophila melanogaster]
Length = 266
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 136/223 (60%), Positives = 163/223 (73%), Gaps = 2/223 (0%)
Query: 335 ETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRT 394
ET QYP NFDL AVL + S D+G+ R +L + I PRKGKD GDHPPITP KL R+
Sbjct: 1 ETNQYPTNFDLPAVLHVLKPSADFGEEARSILGD-IQTPRKGKDAGDHPPITPMKLGNRS 59
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
D D WR+Y++I RHF+GT+ DL Y AK SV E F+ A L+ GFT VMTWS
Sbjct: 60 DFDRDTWRVYEFICRHFMGTVSRDLKYRVTTAKLSVGMETFSCTASVLIDAGFTKVMTWS 119
Query: 455 AM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
A K+E P F G + I V+++E +T PPDYLTESELI+LME+HGIGTDASIPVHIN
Sbjct: 120 AFGKDEPQPPFVQGTQVAINDVRLIESQTGPPDYLTESELITLMEEHGIGTDASIPVHIN 179
Query: 514 NICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
NICQRNYV + +GR+L+PT+LGIVLVHGYQKID ELV PTMR+
Sbjct: 180 NICQRNYVHIENGRKLMPTTLGIVLVHGYQKIDPELVLPTMRT 222
>gi|18313747|ref|NP_560414.1| DNA topoisomerase (topA) [Pyrobaculum aerophilum str. IM2]
gi|18161303|gb|AAL64596.1| DNA topoisomerase (topA) [Pyrobaculum aerophilum str. IM2]
Length = 602
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 178/518 (34%), Positives = 263/518 (50%), Gaps = 36/518 (6%)
Query: 55 SVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP-------KLKLPAFLANEAKDC 107
+ GHIM DF ++ N W + P ELF+ ATP LK L + A
Sbjct: 47 GLSGHIMDFDFAARQNVWTWLPPEELFN-------ATPILVLRGETLKYVKALKSLATKA 99
Query: 108 EFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPN 167
+ + L LD D EGE I +E V+ +N ++R RF+A+T K+I +A +
Sbjct: 100 DEVYLALDADVEGEAIAYETALVVKM---VNPRARLYRVRFNAVTYKEIVSAFQKPTYID 156
Query: 168 IFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDK 227
+ + V R ++DL +G FTR+ T + +SYGPCQTP LG V R +
Sbjct: 157 LKKVEKVFTRMQVDLTLGAVFTRFLTLTVRNSLNK--GQFLSYGPCQTPVLGIVVTRELQ 214
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
R FKPE Y+++ + + V ++ + K +++ VV +
Sbjct: 215 RRNFKPEKYYVIKAVVEIGSSKVEMS-ADAKFKTKGEAEAIAATIKR----GVVKIAVYK 269
Query: 288 KSKTKP-QALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLV 346
+P + L TVEL R AS LG+ + IAE LY GY+SYPRTETT YP DL
Sbjct: 270 PHYVEPPEPLETVELERRASRWLGINSKKTLDIAEELYRAGYISYPRTETTIYPPTLDLK 329
Query: 347 AVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQL-------DGD 399
VL ++ ++ + G + E+L G R D G HPPI PTK ATR ++ G
Sbjct: 330 EVL-EELTAGEHGPYALELLRKGFKPTRGDSDDGAHPPIYPTKGATRAEIFKVFGKAGGH 388
Query: 400 AWRLYDYIVRHFIGTLC-GDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKN 458
AW +YD +VRHF+ TL LV QK+ S + E + + G+ + W
Sbjct: 389 AWAVYDLVVRHFLATLSPPALVEKQKIV-VSFGKIELSAEGQRTIDEGYWRIYPWERQPE 447
Query: 459 ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQR 518
+ +P PG+ +++VER+T PP +TESEL++LM+K+GIGTDA++ HI +R
Sbjct: 448 KPLPRVAPGEPARAVEIRVVERETEPPPQMTESELLALMKKYGIGTDATMQDHIYTNIKR 507
Query: 519 NYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
YV + G + +PT+LGI L + EL+EPT+R+
Sbjct: 508 GYVKLVKG-KCIPTALGISLATSLFQYAPELIEPTVRA 544
>gi|444322976|ref|XP_004182129.1| hypothetical protein TBLA_0H03290 [Tetrapisispora blattae CBS 6284]
gi|387515175|emb|CCH62610.1| hypothetical protein TBLA_0H03290 [Tetrapisispora blattae CBS 6284]
Length = 659
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 183/542 (33%), Positives = 275/542 (50%), Gaps = 48/542 (8%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ G+DF+++ W K ELF P + K+ + EA+ ++L++
Sbjct: 57 MTSVAGHLTGIDFSNERYGWGKCKIEELFDAPLSNVFDKNQKKITENIKREARYADYLMI 116
Query: 113 WLDCDKEGENICFEV-MEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE I +E+ EA++ + + V+RA FS + + I +A N + ++
Sbjct: 117 WTDCDREGEYIGWEIYQEALKGNRRLTDSQ-VFRAVFSHLERRHILSAARNPQRLDMNSV 175
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGK-----------------------YGDLDASLI 208
+V R E+DLR G FTR T + K D+ +I
Sbjct: 176 NAVGTRIEIDLRAGVTFTRLLTDTMRNKVIAAMGPSATSGRSSSDNNNNTNSKKKDSVVI 235
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL-NLNGVAVSV-TWSRGHIFDKSTCN 266
SYG CQ PTLGF V+R ++IR F E +W + L + N + +V W RG++FD+ +C
Sbjct: 236 SYGTCQFPTLGFVVDRFERIRNFISEEFWTIQLHIENKDANTPTVFRWQRGNLFDRLSCL 295
Query: 267 VFFKAVEK--EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY 324
F+++ + V+D++S SK +P L TVEL + + L + ++ AE+LY
Sbjct: 296 AFYESCIEIAGNKAKVIDLKSKPTSKYRPLPLTTVELQKNCAKFLKLNAKQSLDAAEKLY 355
Query: 325 TQGYVSYPRTETTQYPENFDLVAVLR------QQESSPDWGDHVREVLS------NGISK 372
+G+VSYPRTET +P+ DL A++ QQ SP W ++ +LS N
Sbjct: 356 QKGFVSYPRTETDIFPKVMDLRALVENQAQIGQQGRSP-WAEYAEGLLSDDPYAPNKYQF 414
Query: 373 PRKG-KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSV 430
PR G D HPPI P L + R+Y+YI RHF+ + D
Sbjct: 415 PRNGTHDDKAHPPIHPVISLGATANITPVERRVYEYISRHFLASCSTDAKGQSTSLTLDW 474
Query: 431 ADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLT 489
ADE F + +L F V W+ + + +P + + I +M KT+PP +T
Sbjct: 475 ADEKFLADGLVVLERNFLNVYPWAKWETTKQLPRLEMNEECTIMKSEMKSGKTSPPKPMT 534
Query: 490 ESELISLMEKHGIGTDASIPVHINNICQRNYV-TVTSGRR--LVPTSLGIVLVHGYQKID 546
ESELI LM+ +GIGTDA+I HI I RNYV + +G+ L PT LG+ LVHG++ I
Sbjct: 535 ESELIMLMDANGIGTDATIAEHIEKIQIRNYVKSEKAGKETYLQPTKLGVALVHGFEAIG 594
Query: 547 RE 548
E
Sbjct: 595 LE 596
>gi|20090640|ref|NP_616715.1| DNA topoisomerase [Methanosarcina acetivorans C2A]
gi|19915684|gb|AAM05195.1| DNA topoisomerase, type I [Methanosarcina acetivorans C2A]
Length = 843
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 171/511 (33%), Positives = 254/511 (49%), Gaps = 22/511 (4%)
Query: 55 SVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWL 114
+ GHIM DF +YN W +V+P L EK + + + AK + ++L
Sbjct: 49 GLSGHIMNYDFPEQYNKWSEVNPGTLLGVDPEK--FVTRAEYATAIKKLAKRADKIILAC 106
Query: 115 DCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSV 174
D D+EGENI FE ++ V RARFSA++ K+++ A + V P+ A +
Sbjct: 107 DYDREGENIGFEAKTLAEEVTDV----PVARARFSALSPKEVRKAFESPVDPDHNLAMAA 162
Query: 175 DARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPE 234
+ RQ LDL++G AFTR+ T + K D ++S GPCQTPT GF ER IR FK +
Sbjct: 163 ETRQILDLKMGAAFTRFVTLSVREKARTKD--ILSIGPCQTPTCGFVYEREKAIRAFKAK 220
Query: 235 PYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQ 294
+W + G T G+I DK FK ++ K VV + P
Sbjct: 221 DFWKITAIFGAKGGDFEGTHRAGNIHDKEKAAEIFKRLKGAKEGFVVKKTVKEAKTSPPN 280
Query: 295 ALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL----R 350
LNT E ++ AS LG+ P A+++AE+LY G+ SYPRTET +Y ++FD +L R
Sbjct: 281 PLNTTEFLKRASKFLGISPEVALEVAEQLYLAGFTSYPRTETNKYADDFDFKTLLFDFAR 340
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDG-----DAWRLYD 405
Q+E P +LS I KD DHPPI P ++A + ++ A +YD
Sbjct: 341 QKEYKP----FAESILSAPIVPKNGDKDAHDHPPIHPIRVAAKGEISAAVTIPHAAEVYD 396
Query: 406 YIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFK 465
I RHF+ L V+ + V +E F L G+ V + K++ +P +
Sbjct: 397 LIARHFLANLMPAAVFEKTHLHLQVREEPFDSSGTVLKDAGWLEVYPFENKKDKLLPFVE 456
Query: 466 PGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS 525
+ + ++ + + KT+PP LTE+EL++LM+KHGIGT A+ P HI +R Y T
Sbjct: 457 EKEKVDVKKLSNTKSKTSPPKKLTEAELLTLMDKHGIGTKATAPTHIETNKKRGYFE-TK 515
Query: 526 GRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
G+ + G L+ G LV P +R+
Sbjct: 516 GKTVSILDTGFTLMDGLSLTVPILVRPDIRA 546
>gi|449328939|gb|AGE95214.1| DNA topoisomerase III [Encephalitozoon cuniculi]
Length = 621
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 160/456 (35%), Positives = 248/456 (54%), Gaps = 21/456 (4%)
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
+++W DCD+EGENI ++ + V I+ V RARFS IT +D+++A+ NL + N
Sbjct: 2 VIIWTDCDREGENIGRQIRDIVLKVKKID----VRRARFSGITLRDVESALRNLGEINEA 57
Query: 170 EARSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYGPCQTPTLGFCVERH 225
EA +V+ R ELDLRIG AFTR QT + QGK ++S+GPCQ PTLGF VER
Sbjct: 58 EAEAVEVRIELDLRIGSAFTRLQTLSLGRARQGK------KILSFGPCQVPTLGFVVERA 111
Query: 226 DKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS 285
+ +F PE +W L + G TW RG +FD++ FF ++ E +V +
Sbjct: 112 RERESFVPEIFWTLKFKVMHKGFKDEFTWRRGPVFDRNCVVCFFNSLSGE-DARIVSREV 170
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDL 345
K+K +P L TVEL + SS + H M+IAE LY +GY+SYPRTET + FD
Sbjct: 171 KEKTKYRPLPLRTVELQKKCSSYFRLSGHKVMEIAEGLYNRGYISYPRTETDVFDRKFDF 230
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKLATRTQLDGDAWRLY 404
+L + G++ +++ + PR GK+ H PI P K + L G +Y
Sbjct: 231 KHILGKLCKDSKVGEYASKLMGE-FNHPRNGKNNDMAHLPIYPLKEG--SGLSGSDRDIY 287
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
D++ R F+G + D + + + EMF + ++ + V + ++ + DF
Sbjct: 288 DFVSRRFLGCIAKDAKGLETRYELKIGLEMFDLSGIRVIERNYLEVYYYDKWDDKEVGDF 347
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
+++ +++ E +T+ P YL+E+ELI LM+K+GIGTDA+I HI I +R Y V
Sbjct: 348 AVEEIVS-GDLEIDEGETSAPKYLSEAELIGLMDKNGIGTDATIHEHIQKIQERGY-AVK 405
Query: 525 SGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRV 560
+ P +LG L+ GY++ + +P +R + V
Sbjct: 406 VAEEIRPLNLGTALIEGYERFGLNVGKPELRKSLEV 441
>gi|379003817|ref|YP_005259489.1| Topoisomerase IA [Pyrobaculum oguniense TE7]
gi|375159270|gb|AFA38882.1| Topoisomerase IA [Pyrobaculum oguniense TE7]
Length = 602
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 172/516 (33%), Positives = 260/516 (50%), Gaps = 32/516 (6%)
Query: 55 SVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWL 114
+ GH+M DF ++ N W + P ELF+ +K L A + L L
Sbjct: 47 GLSGHLMDFDFAARQNVWTWIPPEELFASQPLIVYRPETMKYVKALRTLAARTHEVYLAL 106
Query: 115 DCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSV 174
D D EGE I +E VR +N ++R RF+A+T ++I A N N+ V
Sbjct: 107 DADVEGEAIAYEAALLVRL---MNPRAKIYRVRFNAVTQREITNAFRNPTHINLRMVEKV 163
Query: 175 DARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPE 234
R ++DL +G FTR+ T ++ +SYGPCQTP LG V R + R FKPE
Sbjct: 164 FTRMQVDLTLGAVFTRFIT--LAVRHSLDRGQFLSYGPCQTPVLGIVVTRELQRRNFKPE 221
Query: 235 PYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT-KP 293
Y+++ + ++G + ++ +V FK ++ + + K+ KP
Sbjct: 222 KYYVVKALVEIDGHRIEMS-----------ADVRFKTRKEAEEAAATISRGVVKAAVYKP 270
Query: 294 QALN------TVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
+N TVEL + AS LG+ + IAE LY GY+SYPRTETT YP DL
Sbjct: 271 HHVNPPVPLETVELEKRASRWLGINSKRTLDIAEELYRGGYISYPRTETTIYPPTLDLRE 330
Query: 348 VLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQ-------LDGDA 400
VL Q+ +S G + E++S G R D HPPI PT+ AT+ + L A
Sbjct: 331 VL-QELASGHLGYYADELMSRGFRPTRGDSDDRAHPPIYPTRGATKGEIAKTFGKLAPQA 389
Query: 401 WRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES 460
W +YD++VRHF+ TL V ++ S E + ++ G+ + W ++
Sbjct: 390 WAIYDFVVRHFLATLSPPAVVEKQKIVVSFGKLEMEAEGQIVVDEGYWRIYPWERQSSKP 449
Query: 461 IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNY 520
+P PG+ V +VER+T PP +TESEL++LM+K+GIGTDA++ HI+ +R Y
Sbjct: 450 LPRVSPGEPARAVKVYVVERETEPPPQMTESELLALMKKYGIGTDATMQDHIHTNVRRGY 509
Query: 521 VTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
+ +T G + +PT LGI L + +L+EPT+R+
Sbjct: 510 MKITKG-KCIPTDLGIALATSLFQFAPQLIEPTVRA 544
>gi|154315224|ref|XP_001556935.1| hypothetical protein BC1G_04651 [Botryotinia fuckeliana B05.10]
Length = 647
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 156/422 (36%), Positives = 226/422 (53%), Gaps = 7/422 (1%)
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMW 161
+A+D + L +W DCD+EGE+I EV R Q +P+ + RARFS I + A
Sbjct: 41 QARDAKALFIWTDCDREGEHIGGEV----RAQALKGNPRIEIKRARFSNIERAHVIQAAK 96
Query: 162 NLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
N V + + +V AR ELDLRIG AFTR+QT Q G L ++SYG CQ PTLGF
Sbjct: 97 NPVNLDQRQVDAVAARIELDLRIGYAFTRFQTTNLQKLGGPLATKMLSYGSCQFPTLGFV 156
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV 281
V+R+ K++ F PEP+W + +T N + V W R +FD++ + F+ K V
Sbjct: 157 VDRYFKVKNFVPEPFWSIKVTHNRENMNVVFNWKRNRLFDRAVVIILFERCLAAKVAKVT 216
Query: 282 DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPE 341
VQ SK KP L TVEL + AS L M AM AE LYT+G++SYPRTET ++ +
Sbjct: 217 KVQEKPTSKWKPLPLTTVELQKAASRWLNMNSQVAMTAAESLYTKGFISYPRTETDRFDK 276
Query: 342 NFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDA 400
+L A++ +Q WG + +++ G PR+G+ D HPPI P T L +
Sbjct: 277 GMNLRALIEKQVQDNRWGPFAQNLVNGGFHWPREGRNDDKAHPPIHPVTYVASTALRPEE 336
Query: 401 WRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE- 459
R+Y+++VR F+ D + +E F +L + V + +
Sbjct: 337 ARVYEFVVRRFLACCSEDAKGQATDVELEYGEETFHTHGLVVLAKNYLDVYVYERWNSST 396
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
S+P F G+ + + KTT P +LTE +LI+LM+ +GIGTDA++ HI I +R
Sbjct: 397 SLPKFTLGERFEPDEAMITDGKTTAPGFLTEPDLIALMDANGIGTDATMAEHIAKIKERE 456
Query: 520 YV 521
YV
Sbjct: 457 YV 458
>gi|342186042|emb|CCC95527.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 913
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 185/515 (35%), Positives = 269/515 (52%), Gaps = 25/515 (4%)
Query: 54 TSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK-LPAFLANEAKDCEFLVL 112
TSV GH+M +F + NW ELF+ T R P++ + L + L L
Sbjct: 51 TSVKGHLMTDEFPPQAKNWTNYPIQELFT-ATLTRHVKPEMSAVKRNLETLGRRATTLGL 109
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W+DCD EGENICFEV+ V +NS + RA FSA+T +DI AM NL +PN A
Sbjct: 110 WMDCDSEGENICFEVINVVSR---VNSRIKICRAVFSALTKRDIFRAMENLRQPNRAVAD 166
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+VDARQE+DLR+G F+R+QT F+ + + ++S+GPCQ PTLGF V R + + F
Sbjct: 167 AVDARQEIDLRVGAVFSRFQTLRFRDMFSGM-PRVLSFGPCQIPTLGFVVRRSWERKGFV 225
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT----VVDVQSSTK 288
PE Y+ L L N + RG ++D + F+ + +E T +V+V +
Sbjct: 226 PEDYFTLVLRHN----NTTFNSLRGSMYDLIAATLVFETMLEEARETPEAEIVEVIEKRE 281
Query: 289 SKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP-ENFDLVA 347
+ + L TVEL ++ +S L + M AE LY +GY+SYPRTET + + +L+
Sbjct: 282 VRRRHVPLATVELQKLCASHLRITSEQCMMWAESLYQEGYLSYPRTETDSFTMTDEELLE 341
Query: 348 VLRQQESSPDWGDHVREVL---SNGISKPRKGKDVGD-HPPITPTK-LATRTQLDGDAWR 402
+ Q ++P+ V +L N +P G + HPPI PTK L + D
Sbjct: 342 IAALQSTNPEVSGFVDAMLRDPQNKYCRPLDGGHSDNAHPPIYPTKPLHVK---DDRRAP 398
Query: 403 LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP 462
LY++IVR+F+ + D V E FT +L G+ V + + +IP
Sbjct: 399 LYNFIVRYFLACISPDAVGATTSVTAVFGGEKFTTSGTVVLENGWMEVYPYKKWYSSTIP 458
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT 522
+K G+ + + +T+PP LTE +LI LM ++GIGTDA+IP HI I R YV
Sbjct: 459 LYKRGERFVPTDANLQKHRTSPPPNLTERDLIHLMNENGIGTDATIPQHIKTILDREYVR 518
Query: 523 VTSGRRLVPTSLGIVLVHGYQKIDR-ELVEPTMRS 556
G LVPT LGI L Y+ I L++P +R+
Sbjct: 519 -REGSDLVPTPLGIALASAYEVIGLVSLLQPQLRA 552
>gi|19074185|ref|NP_584791.1| DNA TOPOISOMERASE III [Encephalitozoon cuniculi GB-M1]
Length = 621
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 160/456 (35%), Positives = 247/456 (54%), Gaps = 21/456 (4%)
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
+++W DCD+EGENI ++ + V I+ V RARFS IT +D+++A+ NL + N
Sbjct: 2 VIIWTDCDREGENIGRQIRDIVLKVKKID----VRRARFSGITLRDVESALRNLGEINEA 57
Query: 170 EARSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYGPCQTPTLGFCVERH 225
EA +V+ R ELDLRIG AFTR QT + QGK ++S+GPCQ PTLGF VER
Sbjct: 58 EAEAVEVRIELDLRIGSAFTRLQTLSLGRARQGK------KILSFGPCQVPTLGFVVERA 111
Query: 226 DKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS 285
+ +F PE +W L G TW RG +FD++ FF ++ E +V +
Sbjct: 112 RERESFVPEIFWTLKFKAMHKGFKDEFTWRRGPVFDRNCVVCFFNSLSGE-DARIVSREV 170
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDL 345
K+K +P L TVEL + SS + H M+IAE LY +GY+SYPRTET + FD
Sbjct: 171 KEKTKYRPLPLRTVELQKKCSSYFRLSGHKVMEIAEGLYNRGYISYPRTETDVFDRKFDF 230
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKLATRTQLDGDAWRLY 404
+L + G++ +++ + PR GK+ H PI P K + L G +Y
Sbjct: 231 KHILGKLCKDSKVGEYASKLMGE-FNHPRNGKNNDMAHLPIYPLKEG--SGLSGSDRDIY 287
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
D++ R F+G + D + + + EMF + ++ + V + ++ + DF
Sbjct: 288 DFVSRRFLGCIAKDAKGLETRYELKIGLEMFDLSGIRVIERNYLEVYYYDKWDDKEVGDF 347
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
+++ +++ E +T+ P YL+E+ELI LM+K+GIGTDA+I HI I +R Y V
Sbjct: 348 AVEEIVS-GDLEIDEGETSAPKYLSEAELIGLMDKNGIGTDATIHEHIQKIQERGY-AVK 405
Query: 525 SGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRV 560
+ P +LG L+ GY++ + +P +R + V
Sbjct: 406 VAEEIRPLNLGTALIEGYERFGLNVGKPELRKSLEV 441
>gi|50288605|ref|XP_446732.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526040|emb|CAG59659.1| unnamed protein product [Candida glabrata]
Length = 650
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 186/545 (34%), Positives = 270/545 (49%), Gaps = 48/545 (8%)
Query: 46 GDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAK 105
G+ V MTSV GH+ G+DF + W +LF P + + K+ A + EAK
Sbjct: 50 GNDVQVTMTSVAGHLTGVDFAHEQYGWGNCRIEQLFDAPLNEVMDKNQQKIAANIRREAK 109
Query: 106 DCEFLVLWLDCDKEGENICFEV-MEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLV 164
+ L++W DCD+EGE I +EV MEA + +N + V+RA FS + I A
Sbjct: 110 FADVLMIWTDCDREGEYIGWEVYMEAQKSNRRLNDNQ-VYRAVFSHLERSHILQAAH--- 165
Query: 165 KPNIFEARSVDA---RQELDLRIGCAFTRYQTKFFQGKYGD-----------LDASLISY 210
+P+ + RSV+A R E+DLR G FTR T+ + K D +ISY
Sbjct: 166 RPHRLDMRSVNAVRTRIEIDLRAGVTFTRLLTETMRNKVASSQSEGPSRNNRRDMPVISY 225
Query: 211 GPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVA-----VSVTWSRGHIFDK-ST 264
G CQ PTLGF V+R ++IR F PE +W + LN+ G + W RG +FD+ S
Sbjct: 226 GTCQFPTLGFVVDRFERIRHFIPEEFWYIQ--LNIKGEEGESKPIQFQWDRGRLFDRFSV 283
Query: 265 CNVFFKAVEKE-KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERL 323
+++ +E++ V D++S SK KP L TVEL + + L + ++ AE+L
Sbjct: 284 LSIYEMCLEQDGDSARVSDIKSKPTSKYKPLPLTTVELQKNCARFLRINAKQSLDAAEKL 343
Query: 324 YTQGYVSYPRTETTQYPENFDLVAVLRQQ-------ESSPDWGDHVREVLSNGISK---- 372
Y +G++SYPRTET +P DL +++ +Q + DW ++ +L+ S
Sbjct: 344 YQRGFISYPRTETNVFPSTMDLKSLVEKQAQLDQPAQGRSDWAEYAANLLNGSGSNGNRF 403
Query: 373 --PRKG-KDVGDHPPITPTKLATR--TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAK 427
PR G +D HPPI P R T L+ R+Y+YI RHF+ + D Q
Sbjct: 404 MFPRSGNRDDKAHPPIHPIVSVGRDVTSLNPTEKRVYEYICRHFLASCSEDAKGQQTTIS 463
Query: 428 FSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPD 486
+ E F + F V W+ + +P + I +M T+PP
Sbjct: 464 LDWSGERFYANGLMVTERNFLDVYPWARWETTRQLPRLEINQQCKILKAEMKNGSTSPPK 523
Query: 487 YLTESELISLMEKHGIGTDASIPVHINNICQRNYVT---VTSGRRLVPTSLGIVLVHGYQ 543
+TESELI LM+ +GIGTDA+I HI I R+YV V L PT LG LVHG++
Sbjct: 524 PMTESELIVLMDANGIGTDATIAEHIEKIQMRSYVQSQKVGKETYLQPTILGRALVHGFE 583
Query: 544 KIDRE 548
I E
Sbjct: 584 AIGLE 588
>gi|366991737|ref|XP_003675634.1| hypothetical protein NCAS_0C02780 [Naumovozyma castellii CBS 4309]
gi|342301499|emb|CCC69268.1| hypothetical protein NCAS_0C02780 [Naumovozyma castellii CBS 4309]
Length = 663
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 179/548 (32%), Positives = 267/548 (48%), Gaps = 56/548 (10%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ +DF W K ELF P + + K+ + + EA++ +FL++
Sbjct: 57 MTSVAGHLTSVDFRGDIYGWGKCPIYELFDAPLSTEMDSNQKKIASNIQKEARNADFLMI 116
Query: 113 WLDCDKEGENICFEVM-EAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE I +E++ EA R +N + V+RA FS + + I A + ++
Sbjct: 117 WTDCDREGEYIGWEILQEAERGNRRLNE-QQVYRANFSHLERRHILDAARRPQRLDMKSV 175
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDAS------------------------- 206
+V R ELDLR G FTR T + K ++AS
Sbjct: 176 SAVRTRMELDLRTGVTFTRLLTDTMKQK---VEASRLQVNNNSNNNNIQNNQNHHKKKKD 232
Query: 207 ---LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNL--NGVAVSVTWSRGHIFD 261
++SYG CQ PTLGF V+R ++I F E +W + L + G + + W RGH+FD
Sbjct: 233 SPVIVSYGACQFPTLGFVVDRFERIENFVSEEFWYIQLQIKNADTGDSTTFQWDRGHLFD 292
Query: 262 KSTCNVFFKAVEKE--KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQI 319
+ + F+++ + VVD++S SK +P L TVEL R + L M ++
Sbjct: 293 RLSVLTFYESCIETAGDKAKVVDLKSKPTSKYRPLPLTTVELQRNCARFLRMNAKKSLAA 352
Query: 320 AERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ-------ESSPDWGDHV------REVL 366
AE+LY +G+VSYPRTET +P+N DL +++ +Q + W +
Sbjct: 353 AEKLYQKGFVSYPRTETDTFPQNMDLKSLVEKQAQLDQPGNNKTAWASYAESLISESSSS 412
Query: 367 SNGISKPRKGK-DVGDHPPITP-TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQK 424
+N PR G D HPPI P ++ L+ D R+Y+YIVRHF+ D
Sbjct: 413 NNKFRFPRSGSHDDKAHPPIHPIVPVSGNANLNIDEKRVYEYIVRHFLACCSEDAKGQST 472
Query: 425 VAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTT 483
A E F+ +L F V W+ + + +P + + I M+ T+
Sbjct: 473 TLILDWAGEKFSASGLIVLERNFLDVYPWAKWETTKRLPRLEMNEECEISKADMLSGNTS 532
Query: 484 PPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV---TVTSGRRLVPTSLGIVLVH 540
PP +TESELI LM+ +GIGTDA+I HI+ I R Y+ V L PT LG+ LVH
Sbjct: 533 PPKPMTESELIMLMDANGIGTDATIADHIDKIQVRQYIRSEKVGKETFLQPTILGVALVH 592
Query: 541 GYQKIDRE 548
G++ I E
Sbjct: 593 GFETIGLE 600
>gi|296814980|ref|XP_002847827.1| DNA topoisomerase III [Arthroderma otae CBS 113480]
gi|238840852|gb|EEQ30514.1| DNA topoisomerase III [Arthroderma otae CBS 113480]
Length = 631
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 168/516 (32%), Positives = 248/516 (48%), Gaps = 36/516 (6%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPT----------EKREATPKLKLPAFLAN 102
MTSV GH+ +F +Y NW +P +LF + KL + +
Sbjct: 58 MTSVLGHLTTSEFEPRYRNWSSCNPSQLFDANVITSVDKVRILSRCAVHEKLGIAKNIKI 117
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMW 161
+A+ + L +W DCD+EGE I EV + Q + +P+ V RA+FS + A
Sbjct: 118 QARYSKALFIWTDCDREGEYIGSEV----KAQAVLGNPRIEVKRAKFSNTERTHVLQAAR 173
Query: 162 NLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
+ + + +V AR ELDLRIG AFTR QT Q G L +ISYG CQ PTLGF
Sbjct: 174 GPIGLDEQQVDAVAARIELDLRIGAAFTRLQTLQLQALGGVLAEKIISYGSCQFPTLGFV 233
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV 281
V+R+ +++ FKPE +W + ++ + + V+ W RGH+FD++ V F+ K TV
Sbjct: 234 VDRYMRVKNFKPEAFWSIKVSHTRDSITVNFNWQRGHLFDRAVVVVLFERCIAAKTATVT 293
Query: 282 DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPE 341
V SK +P L TV+L + S L M A+ LYT+G+ YP TET Q+
Sbjct: 294 KVNKKPTSKWRPLPLTTVDLQMMGSKYLRMD-SQAIMSRRSLYTRGFHQYPATETDQFDN 352
Query: 342 NFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDA 400
DL ++ +Q S WG G +PR+G++ HPPI P L D
Sbjct: 353 EIDLKKLVEKQYPSDIWG--------GGFKQPRRGRNNDKAHPPIHPVAYVAPRVLKADE 404
Query: 401 WRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NE 459
++Y+++ R F+ D + DE F +L + V + + ++
Sbjct: 405 KKVYEFVARRFLACCSEDAKGESTDIEIKYGDEQFHTRGLVVLERNYLDVYVYDKWESSQ 464
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
+P+F + + + E KT P YLTE ELI LM+ +GIGTDA++ HI+ I QR
Sbjct: 465 PLPNFSLNETFEPREANITEGKTVAPGYLTEPELIGLMDANGIGTDATMADHISKIKQRE 524
Query: 520 YVTVTSG----------RRLVPTSLGIVLVHGYQKI 545
YV +PT LG+ LV GY +
Sbjct: 525 YVATRPRGGGRGSGSSVEEFIPTKLGVALVEGYDNV 560
>gi|159040701|ref|YP_001539953.1| DNA topoisomerase type IA central domain-containing protein
[Caldivirga maquilingensis IC-167]
gi|157919536|gb|ABW00963.1| DNA topoisomerase type IA central domain protein [Caldivirga
maquilingensis IC-167]
Length = 610
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 176/512 (34%), Positives = 260/512 (50%), Gaps = 24/512 (4%)
Query: 58 GHIMGLDFTSKYNNWDKVDP---LELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWL 114
GHI+ DF YNNW++V+P L+L + P + L+ +A++ ++L L
Sbjct: 52 GHILDFDFEHSYNNWNRVEPGKLLDLEPVMVIRGWDRPYVTALVELSKQARE---IILAL 108
Query: 115 DCDKEGENICFEVMEAVRHQININSPKTVWR-ARFSAITDKDIKAAMWNLVKPNIFEARS 173
D D EGE I +EVM R + P +R A FSA+T DI+ A L N+ AR
Sbjct: 109 DSDVEGEAIAYEVMLVTR----LRKPTLRFRRALFSAVTRDDIRRAFSKLTTINVNLARK 164
Query: 174 VDARQELDLRIGCAFTRYQTKFFQGKYGDLD-ASLISYGPCQTPTLGFCVERHDKIRTFK 232
V R +DL+ G FTR T + L+ +SYGPCQTP L V+R + FK
Sbjct: 165 VFTRMVIDLKYGATFTRLLTLSAKSSKAPLNRGEFLSYGPCQTPVLNLVVQRALERENFK 224
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE Y+ + L + NG + + S + V+ K V V ++++
Sbjct: 225 PEVYYKIKLIIEANGELIELE-SIDKFKNLKEAQEALSRVKAGKAV-VKNIEAKRVHVNP 282
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P+ L TVEL R AS L + + AE LY QGY+SYPRTET YP DL +LR
Sbjct: 283 PKPLETVELERRASRFLNIRSKQTLDAAEELYRQGYISYPRTETNIYPPTLDLRGILRNL 342
Query: 353 ESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQL-----DGDAWRLYDY 406
S+ +G + R +L+ G +P GKD + HPPI P K A + +L D W +YD
Sbjct: 343 TSTSTYGQYARHLLA-GELRPTAGKDNDNAHPPIHPVKAADKPELMARFRDFKYWLIYDL 401
Query: 407 IVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP--DF 464
+VRHF+ TL + ++ +F +++ G+ + + + +P
Sbjct: 402 VVRHFLATLSPPALIEEQRLTVDAGGVLFEASGLRIINDGYFTIYPFERPRANPLPLSAL 461
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
+ G + ++ K+V+RKTTPP YL+ESEL+ LM K+GIGTDA++ HI+ +R Y +
Sbjct: 462 RIGMQVTVKDAKVVKRKTTPPPYLSESELLRLMRKYGIGTDATMQDHIHTNVKRRYFKII 521
Query: 525 SGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
G + VPT LG L+ K L++P RS
Sbjct: 522 KG-QCVPTPLGKALITSLSKYAPTLIDPNFRS 552
>gi|119719794|ref|YP_920289.1| DNA topoisomerase [Thermofilum pendens Hrk 5]
gi|119524914|gb|ABL78286.1| DNA topoisomerase [Thermofilum pendens Hrk 5]
Length = 631
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 180/508 (35%), Positives = 265/508 (52%), Gaps = 18/508 (3%)
Query: 56 VCGHIMGLDFTSKYNNWDKVDPLELF-SCPTEKREATPKLKLPAFLANEAKDCEFLVLWL 114
V GHI+ DF +YN W+ VDP LF + P + + A L A+ ++L L
Sbjct: 52 VSGHILDFDFPEEYNKWESVDPRVLFFTNPVLVTREGAYIYVRA-LKTLARQTSTVILAL 110
Query: 115 DCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSV 174
D D EGE I FEVM ++ ++N RA FSA+T DI A L +PN A
Sbjct: 111 DADVEGEAIAFEVMRIMK---SVNPELEFRRAWFSAVTKSDILEAFRKLREPNENLANKA 167
Query: 175 DARQELDLRIGCAFTRYQTKFFQGKYGDL-DASLISYGPCQTPTLGFCVERHDKIRTFKP 233
AR +DL IG +FTR T + G + S +SYGPCQTP L V+R + FK
Sbjct: 168 FARMVVDLTIGASFTRILTLSARRNGGVMPRGSFLSYGPCQTPVLYLVVKRELEREQFKK 227
Query: 234 EPYWLLDLTL-NLNGV-AVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
+ Y++L + + GV S T+ D+ +V++ VV + +
Sbjct: 228 KKYYVLRVRFRSQEGVFTASATFE-----DQEKAKSALDSVKRTGVGVVVSAEFNAVEVE 282
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
P LNTV L AS L + P + IAE+LY+ GY+SYPRTETT YP +L +
Sbjct: 283 PPVPLNTVYLESRASLFLNLRPKETLSIAEKLYSFGYISYPRTETTIYPPTLNLRGIASM 342
Query: 352 QESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQL----DGDAWRLYDYI 407
D G +V +VL+ G + R +D HPPI PT+ A+R ++ AW++Y+Y+
Sbjct: 343 FTRWEDAGWYVAKVLAKGFTPTRGREDDKAHPPIYPTRSASREEITRRFGEKAWKVYEYV 402
Query: 408 VRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPG 467
VRHF+ T+ + V ++ V + E + L++ GF V +S K+E +P G
Sbjct: 403 VRHFLATISENAVVERQRVVVKVGELSLQSEGRKLVYAGFYNVYKYSVPKDEPLPYVVEG 462
Query: 468 DLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGR 527
+ + ++ K+ R T PP YL+ESEL++LM+K+GIGTDA++ HI+ +R Y V + +
Sbjct: 463 EEVEVEDAKIEARTTQPPPYLSESELLALMKKYGIGTDATMQEHIHTNIERRYFVVKN-K 521
Query: 528 RLVPTSLGIVLVHGYQKIDRELVEPTMR 555
R +PT LG L + ELV P +R
Sbjct: 522 RCIPTPLGRTLALALYETVPELVLPEVR 549
>gi|295867393|gb|ADG51415.1| CG3458 [Drosophila simulans]
Length = 226
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 134/220 (60%), Positives = 160/220 (72%), Gaps = 2/220 (0%)
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLD 397
QYP NFDL AVL + S D+G+ R +L + I PRKGKD GDHPPITP KL R+ D
Sbjct: 1 QYPTNFDLPAVLHVLKPSADFGEEARSILGD-IQTPRKGKDAGDHPPITPMKLGNRSDFD 59
Query: 398 GDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM- 456
D WR+Y++I RHF+GT+ DL Y AK V E F+ A L+ GFT VMTWSA
Sbjct: 60 RDTWRVYEFICRHFMGTVSRDLKYRVTTAKLRVGMETFSCTASVLIDAGFTKVMTWSAFG 119
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
K+E P F G + I V++VE +T PPDYLTESELI+LME+HGIGTDASIPVHINNIC
Sbjct: 120 KDEPQPPFVQGTEVAINDVRLVESQTGPPDYLTESELITLMEEHGIGTDASIPVHINNIC 179
Query: 517 QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
QRNYV + +GR+L+PT+LGIVLVHGYQKID ELV PTMR+
Sbjct: 180 QRNYVHIENGRKLMPTTLGIVLVHGYQKIDPELVLPTMRT 219
>gi|295867387|gb|ADG51412.1| CG3458 [Drosophila simulans]
gi|295867389|gb|ADG51413.1| CG3458 [Drosophila simulans]
gi|295867391|gb|ADG51414.1| CG3458 [Drosophila simulans]
gi|295867395|gb|ADG51416.1| CG3458 [Drosophila simulans]
gi|295867397|gb|ADG51417.1| CG3458 [Drosophila simulans]
gi|295867399|gb|ADG51418.1| CG3458 [Drosophila simulans]
gi|295867401|gb|ADG51419.1| CG3458 [Drosophila simulans]
gi|295867403|gb|ADG51420.1| CG3458 [Drosophila simulans]
gi|295867405|gb|ADG51421.1| CG3458 [Drosophila simulans]
gi|295867407|gb|ADG51422.1| CG3458 [Drosophila simulans]
gi|295867409|gb|ADG51423.1| CG3458 [Drosophila simulans]
gi|295867411|gb|ADG51424.1| CG3458 [Drosophila simulans]
gi|295867413|gb|ADG51425.1| CG3458 [Drosophila simulans]
gi|295867415|gb|ADG51426.1| CG3458 [Drosophila simulans]
gi|295867417|gb|ADG51427.1| CG3458 [Drosophila simulans]
gi|295867421|gb|ADG51429.1| CG3458 [Drosophila simulans]
gi|295867423|gb|ADG51430.1| CG3458 [Drosophila simulans]
gi|295867425|gb|ADG51431.1| CG3458 [Drosophila simulans]
gi|295867427|gb|ADG51432.1| CG3458 [Drosophila simulans]
gi|295867429|gb|ADG51433.1| CG3458 [Drosophila simulans]
gi|295867431|gb|ADG51434.1| CG3458 [Drosophila simulans]
gi|295867433|gb|ADG51435.1| CG3458 [Drosophila simulans]
gi|295867435|gb|ADG51436.1| CG3458 [Drosophila simulans]
gi|295867437|gb|ADG51437.1| CG3458 [Drosophila simulans]
gi|295867461|gb|ADG51449.1| CG3458 [Drosophila simulans]
gi|295867463|gb|ADG51450.1| CG3458 [Drosophila simulans]
gi|295867465|gb|ADG51451.1| CG3458 [Drosophila simulans]
gi|295867467|gb|ADG51452.1| CG3458 [Drosophila simulans]
gi|295867469|gb|ADG51453.1| CG3458 [Drosophila simulans]
gi|295867471|gb|ADG51454.1| CG3458 [Drosophila simulans]
gi|295867473|gb|ADG51455.1| CG3458 [Drosophila simulans]
gi|295867475|gb|ADG51456.1| CG3458 [Drosophila simulans]
gi|295867477|gb|ADG51457.1| CG3458 [Drosophila simulans]
gi|295867479|gb|ADG51458.1| CG3458 [Drosophila simulans]
gi|295867481|gb|ADG51459.1| CG3458 [Drosophila simulans]
gi|295867483|gb|ADG51460.1| CG3458 [Drosophila simulans]
gi|295867485|gb|ADG51461.1| CG3458 [Drosophila simulans]
gi|295867487|gb|ADG51462.1| CG3458 [Drosophila simulans]
gi|295867489|gb|ADG51463.1| CG3458 [Drosophila simulans]
gi|295867491|gb|ADG51464.1| CG3458 [Drosophila simulans]
gi|295867493|gb|ADG51465.1| CG3458 [Drosophila simulans]
gi|295867495|gb|ADG51466.1| CG3458 [Drosophila simulans]
gi|295867497|gb|ADG51467.1| CG3458 [Drosophila simulans]
gi|295867499|gb|ADG51468.1| CG3458 [Drosophila simulans]
gi|295867501|gb|ADG51469.1| CG3458 [Drosophila simulans]
gi|295867503|gb|ADG51470.1| CG3458 [Drosophila simulans]
gi|295867505|gb|ADG51471.1| CG3458 [Drosophila simulans]
gi|295867507|gb|ADG51472.1| CG3458 [Drosophila simulans]
gi|295867509|gb|ADG51473.1| CG3458 [Drosophila simulans]
gi|295867511|gb|ADG51474.1| CG3458 [Drosophila simulans]
gi|295867513|gb|ADG51475.1| CG3458 [Drosophila simulans]
Length = 226
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 133/220 (60%), Positives = 160/220 (72%), Gaps = 2/220 (0%)
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLD 397
QYP NFDL AVL + S D+G+ R +L + I PRKGKD GDHPPITP KL R+ D
Sbjct: 1 QYPTNFDLPAVLHVLKPSADFGEEARSILGD-IQTPRKGKDAGDHPPITPMKLGNRSDFD 59
Query: 398 GDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM- 456
D WR+Y++I RHF+GT+ DL Y AK V E F+ A L+ GFT VMTWSA
Sbjct: 60 RDTWRVYEFICRHFMGTVSRDLKYRVTTAKLRVGMETFSCTASVLIDAGFTKVMTWSAFG 119
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
K+E P F G + I V+++E +T PPDYLTESELI+LME+HGIGTDASIPVHINNIC
Sbjct: 120 KDEPQPPFVQGTEVAINDVRLIESQTGPPDYLTESELITLMEEHGIGTDASIPVHINNIC 179
Query: 517 QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
QRNYV + +GR+L+PT+LGIVLVHGYQKID ELV PTMR+
Sbjct: 180 QRNYVHIENGRKLMPTTLGIVLVHGYQKIDPELVLPTMRT 219
>gi|406867141|gb|EKD20180.1| DNA topoisomerase [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 671
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 166/481 (34%), Positives = 247/481 (51%), Gaps = 16/481 (3%)
Query: 53 MTSVCGHIMGLDFTSKY-NNWDKVDPLELFSCPTEKREATPKLKLPAFLAN---EAKDCE 108
MT+V GHI F +Y +WD V P ELF+ P + + K + A N +A+ +
Sbjct: 57 MTAVSGHITEARFAPEYEGSWDYVPPQELFTAPV-RVQVVDKPESQAIAQNIFEQARGAK 115
Query: 109 FLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNI 168
L +W DCD+EGE+I EV H+ N P V RARFS I + A N + +
Sbjct: 116 ALFIWTDCDREGEHIGGEVRTEA-HRGNPRLP--VKRARFSNIERAHVIQAARNPIDLDD 172
Query: 169 FEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL------DASLISYGPCQTPTLGFCV 222
+ +V R ELDLRIG FTR+ T + G++ + +ISYG CQ PTLGF V
Sbjct: 173 RQVSAVATRIELDLRIGFIFTRWLTVNLRTLGGNMATNEVGEKRVISYGSCQFPTLGFVV 232
Query: 223 ERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVD 282
+R+ ++R F PE +W + +T + + V W R +FD++ + F+ K V
Sbjct: 233 DRYFRVRNFVPETFWSIKVTHRRDDMDVVFNWKRSRLFDRAIVVIIFERCIAAKTAKVTR 292
Query: 283 VQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPEN 342
V SK +P L TVE + AS L M AM +AE LY +G++SYPRTET ++ +
Sbjct: 293 VHEKPTSKWRPLPLTTVEFQKNASRFLRMNSSTAMSVAEGLYQKGFISYPRTETDRFDKG 352
Query: 343 FDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAW 401
DL A++ +Q WG + + +++ G +PR+G+ D HPPI P L+ +
Sbjct: 353 IDLRALVEKQVQDGRWGGYAQGLVAGGFKQPRQGRNDDKAHPPIHPVTWVAPNTLNPEEG 412
Query: 402 RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI 461
R+Y++I R F+ D A+ DE F +L + V + + +I
Sbjct: 413 RVYEFITRRFLACCSEDAKGQATDAEIEYGDENFGAHGLVVLERNYLDVYPYENWTSTAI 472
Query: 462 -PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNY 520
P F ++ + E TT P YLTE +L++LM+ +GIGTDA++ HI I RNY
Sbjct: 473 LPRFTLNEIFEPTEAMVTEGNTTAPGYLTEPDLLALMDANGIGTDATMAEHIKMIQDRNY 532
Query: 521 V 521
V
Sbjct: 533 V 533
>gi|403213445|emb|CCK67947.1| hypothetical protein KNAG_0A02580 [Kazachstania naganishii CBS
8797]
Length = 650
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 175/531 (32%), Positives = 262/531 (49%), Gaps = 35/531 (6%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ G+DF + W K + ELF P + + + + EA++ ++L++
Sbjct: 56 MTSVAGHLRGMDFDNARYGWGKCNIFELFDAPVSETMDRNQQLIADNIRKEARNVDYLMV 115
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I +E+ +A + N ++RA FS + I A + + ++
Sbjct: 116 WTDCDREGEYIGWEIFQAAQKGNNRLDESKLYRAVFSHVERGHILQAARSPQRLDMCSVN 175
Query: 173 SVDARQELDLRIGCAFTRY---------QTKFFQGKYGDL------DASLISYGPCQTPT 217
+V R ELDLR G +FTR Q + GK G D +ISYGPCQ P
Sbjct: 176 AVGTRIELDLRTGVSFTRLLTDTMARRVQAQTAPGKTGHQSQNRKKDKVVISYGPCQFPH 235
Query: 218 LGF-CVERHDKIRTFKPEPYWLLDLTL-NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKE 275
G R ++IR F PE +W + L L N + W RGH+FD+ + F++ +
Sbjct: 236 FGVRGGRRFERIRNFIPEEFWYIQLQLAGENTGTTTFQWERGHLFDRLSVLTFYETCLET 295
Query: 276 K--HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333
V +++S +K +P L TVEL + + L + ++ AE+LY +G++SYPR
Sbjct: 296 AGDRAKVSNLRSKPTAKYRPLPLTTVELQKNCARFLRINAKQSLAAAEKLYQKGFISYPR 355
Query: 334 TETTQYPENFD-----LVAVLRQQESSPDWGDHVREVLS--NGISK---PRKGK-DVGDH 382
TET +P + +V L +S W + E+LS NG +K PR G D H
Sbjct: 356 TETDTFPRTMESELKKIVGNLGGSDSDNSWSSYANELLSVNNGSNKFKFPRGGSHDDKAH 415
Query: 383 PPITP-TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKY 441
PPI P L +D + R+Y+Y+VRHF+ D A E+FT
Sbjct: 416 PPIHPIISLGPNANVDANEKRVYEYVVRHFLACCSEDAKGQSTTLTLDWASELFTATGLV 475
Query: 442 LLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKH 500
+L F V ++ + + +P + + +M T+ P +TESELISLM+ +
Sbjct: 476 VLERNFLDVYPYAKWETTKQLPRLEINQECLLDKAEMKSGTTSTPKPMTESELISLMDAN 535
Query: 501 GIGTDASIPVHINNICQRNYV---TVTSGRRLVPTSLGIVLVHGYQKIDRE 548
GIGTDA+I HI I RNYV V L PT+LG+ LVHG++ I E
Sbjct: 536 GIGTDATIAEHIEKIQARNYVKSEKVGKETYLQPTTLGVALVHGFEAIGLE 586
>gi|123431134|ref|XP_001308043.1| DNA topoisomerase family protein [Trichomonas vaginalis G3]
gi|121889702|gb|EAX95113.1| DNA topoisomerase family protein [Trichomonas vaginalis G3]
Length = 644
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 167/506 (33%), Positives = 252/506 (49%), Gaps = 11/506 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
TSV GH++ DF +Y NW+ +LF C + + L +A+ + L
Sbjct: 55 FTSVAGHVLNYDFPPEYKNWETFGNTKLFDCRIISGVTSNMQDVVDNLQQQARSVNLVFL 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLD D+EGE I EV E + +N RARFS ++ ++I A N N +A
Sbjct: 115 WLDNDREGEGISEEVEEICKQ---VNQRADFKRARFSGLSPREIIHAFNNPTPINRNDAA 171
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V RQE+DLRIG AFTR+Q K F+G D D LIS+G CQ PTLGF VE
Sbjct: 172 AVKLRQEIDLRIGAAFTRFQ-KQFKGMLQDAD--LISFGSCQFPTLGFVVEAFLNHIKHV 228
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE +W +D + + + V++ W R +F K + + + V+ V + K
Sbjct: 229 PEYFWKIDPIITKDNIKVTLKWDRKRLFCKLSTFAIYAYILDNPMAKVLKVDERQELSFK 288
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ- 351
P L+T+EL R S L + +M AE+LY G +SYPRTET + +F V+ +
Sbjct: 289 PLPLSTIELQRRCSKYLKISAQRSMDAAEKLYQNGCISYPRTETDSFSSDFKFFDVVNEL 348
Query: 352 QESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVRH 410
+ G + ++L I PR GK + HPPI P K+ + D +++D++ RH
Sbjct: 349 TRFNGQIGQYSNKILQQ-IVPPRAGKHSDNAHPPIYPIKVPDKFDTP-DQQKVFDFVCRH 406
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLI 470
F+ D V F + E F ++ +L + + + K IP FK G+ I
Sbjct: 407 FLACCSKDGVSLATRVTFDINSEKFHLKGTRVLEANWHEIYPYIPFKGNKIPQFKIGENI 466
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLV 530
++ E +TT P LTE +L+ M + GIGTDA+ HI+ I +R YV V
Sbjct: 467 LPTKIEFNEGQTTAPPLLTEPDLLKKMNQEGIGTDATYQEHISKILERKYV-VQENNFFK 525
Query: 531 PTSLGIVLVHGYQKIDRELVEPTMRS 556
PT LG+ L +GY+ + + ++P +R+
Sbjct: 526 PTPLGLALNNGYEGMGFDFMKPKLRA 551
>gi|295867419|gb|ADG51428.1| CG3458 [Drosophila simulans]
Length = 226
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 132/220 (60%), Positives = 160/220 (72%), Gaps = 2/220 (0%)
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLD 397
QYP NFDL AVL + S D+G+ R +L + I PRKGKD GDHPPITP KL R+ D
Sbjct: 1 QYPTNFDLPAVLHVLKPSADFGEEARSILGD-IQTPRKGKDAGDHPPITPMKLGNRSDFD 59
Query: 398 GDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM- 456
D WR+Y++I RHF+GT+ DL Y AK V E F+ A L+ GFT VM+WSA
Sbjct: 60 RDTWRVYEFICRHFMGTVSRDLKYRVTTAKLRVGMETFSCTASVLIDAGFTKVMSWSAFG 119
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
K+E P F G + I V+++E +T PPDYLTESELI+LME+HGIGTDASIPVHINNIC
Sbjct: 120 KDEPQPPFVQGTEVAINDVRLIESQTGPPDYLTESELITLMEEHGIGTDASIPVHINNIC 179
Query: 517 QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
QRNYV + +GR+L+PT+LGIVLVHGYQKID ELV PTMR+
Sbjct: 180 QRNYVHIENGRKLMPTTLGIVLVHGYQKIDPELVLPTMRT 219
>gi|449016179|dbj|BAM79581.1| DNA topoisomerase III alpha [Cyanidioschyzon merolae strain 10D]
Length = 784
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 178/555 (32%), Positives = 267/555 (48%), Gaps = 91/555 (16%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCP-TEKREATPK--LKLPAFLANEAKDCEF 109
TSV GH+ LDF + Y+ W +P+++F + R P+ K+ L A+ C++
Sbjct: 61 FTSVSGHVEELDFVTPYHKWSACEPVDIFRRDLVQTRRFVPERNAKVAQNLGQLARTCQY 120
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
LVLWLD D EGE I EV +I P V+RARFSA+T +D+ A L + N
Sbjct: 121 LVLWLDGDSEGEAISDEV-----QRICKLPPSMVFRARFSAVTPRDLFRACATLDRVNAK 175
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKY----------------------------- 200
+V RQE+DLR G AFTR+ T+ Q Y
Sbjct: 176 VVEAVWIRQEIDLRAGAAFTRWLTRHIQRHYPQALICTSAIVASRRKGASGTSNLGRNER 235
Query: 201 ------GDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLN-----LNGVA 249
DA+++SYGPCQ PTLG V+R+ + R F+ +P+W + + + +G
Sbjct: 236 LQGSGVSSADAAVVSYGPCQFPTLGLVVDRYRERREFQTKPFWTIRMRIQTTGDRASGNQ 295
Query: 250 VSVTWSRGHIFDKSTCNVFFK----AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVA 305
V + W R IFD+ V F+ AV + ++ + +++P L+TVEL + A
Sbjct: 296 VELCWDRARIFDRFIAYVLFQRLHDAVRLPGALRMIACEKQPAHRSRPLPLSTVELQKEA 355
Query: 306 SSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPEN----FDLVAVLRQQESSPDWGDH 361
S L + M+IAE+LY QGY+SYPRTET ++P + +L A++ Q W
Sbjct: 356 SRKLKLSSAQTMEIAEQLYQQGYISYPRTETDRFPTDDRGISNLKALITLQSEDQRWSLL 415
Query: 362 VREVLS------NGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGT 414
+ +L G PR G D HPPI PT A L GDA RLY+YI R F+ +
Sbjct: 416 AKRLLETDDVSRGGFKAPRAGSHDDHAHPPIHPTSAAPPGTLSGDAARLYEYIARRFLAS 475
Query: 415 LCGDLVYTQKVAKFSVAD----------------------EMFTMEAKYLLHPGFTGVMT 452
D + + +F+V E FT + + + G+ V +
Sbjct: 476 CSADASGERTIWRFAVFSGASEARTEAPQETCMFPANTVLETFTSKGLRITNLGYLEVFS 535
Query: 453 -WSAMKNESIP-DFKPGDLIP----IQSVKMVERKTTPPDYLTESELISLMEKHGIGTDA 506
+ ++P D + G P + +++ E T PP L+E++LI+ M++HGIGTDA
Sbjct: 536 PYEKWLESTLPGDLECGAAAPEHFWLTELRLEESITEPPALLSEADLIAAMDRHGIGTDA 595
Query: 507 SIPVHINNICQRNYV 521
+I HI I +R+YV
Sbjct: 596 TIAEHIKKIQERHYV 610
>gi|336476470|ref|YP_004615611.1| DNA topoisomerase [Methanosalsum zhilinae DSM 4017]
gi|335929851|gb|AEH60392.1| DNA topoisomerase [Methanosalsum zhilinae DSM 4017]
Length = 772
Score = 268 bits (684), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 165/517 (31%), Positives = 268/517 (51%), Gaps = 28/517 (5%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKL-KLPAFLANEAKDCEF 109
+K+ + GHIMG D+ S Y +W VDP L EK+ + + LANEA +
Sbjct: 45 WKIMGLAGHIMGYDYPSAYKDWRAVDPGTLLDIEPEKKVLKEEYASVIRKLANEASE--- 101
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
++L D D+EGENI FE + ++ + RA+FS+++ ++I A +LV+P++
Sbjct: 102 IILACDYDREGENIGFEAKDIASKVSDV----SFKRAKFSSLSPEEINRAFNSLVEPDVN 157
Query: 170 EARSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYGPCQTPTLGFCVERH 225
A + +ARQ LDL++G AFTR+ T ++ + K ++S GPCQ+PT GF ER
Sbjct: 158 MAMAAEARQILDLKMGVAFTRFITLSVREYVRTK------KILSVGPCQSPTCGFVYERE 211
Query: 226 DKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS 285
IR FKP +W ++ N + +G IF+K ++ ++ ++ +
Sbjct: 212 RTIRDFKPTDFWKIEALFNSGETNFPGSHRKGKIFNKDEAMSVYRKIKDCSSGSICERNV 271
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDL 345
S P LNT EL++ S+ LG+ P + ++IAE LY G++SYPRTET +Y + F
Sbjct: 272 KESSVNPPNPLNTNELLKRGSNFLGISPENTLKIAEDLYLAGFISYPRTETNKYSKEFKF 331
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQL-----DGD 399
++ + + + D V L G P+ G KD DHPPI P K A++ + + D
Sbjct: 332 AEIIDEFRNG-HYNDCVS--LLPGDIHPKNGKKDSHDHPPIYPIKSASKKDVMKLSENPD 388
Query: 400 AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
W +YD IVRHF L ++ + V DE+F + + G+ V + ++
Sbjct: 389 YWNIYDLIVRHFFANLMPPAIFEKTHLAVLVKDEIFDSKGSVMKDAGWMQVYPFEKSSDK 448
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
+P + GD + I+ + +TTPP LTE+EL++LME +GIGT A+ HI +R
Sbjct: 449 LLPRLQMGDGVNIEEISCNMSQTTPPKKLTEAELLTLMEHNGIGTKATASGHIETNKKRG 508
Query: 520 YVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
Y G+ + G VL+ + +++P +R+
Sbjct: 509 YFE-NRGKTVSIMDRGFVLMDALNESVPSVIKPEVRA 544
>gi|154412191|ref|XP_001579129.1| DNA topoisomerase family protein [Trichomonas vaginalis G3]
gi|121913332|gb|EAY18143.1| DNA topoisomerase family protein [Trichomonas vaginalis G3]
Length = 662
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 170/515 (33%), Positives = 260/515 (50%), Gaps = 15/515 (2%)
Query: 46 GDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAK 105
G+ V TSV GH++ F + NW +LF C K+ L +AK
Sbjct: 48 GEDVKVVFTSVAGHVLNYCFPPECKNWQTFGNTKLFDCQLNTCITANMEKVVGNLQTQAK 107
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
+ LWLD D+EGE I EV E + Q+N N+ RARFS ++ ++I A N
Sbjct: 108 KAFLVFLWLDNDREGEGISEEVEEICK-QVNENA--NYKRARFSGLSPREIIHAFNNPTP 164
Query: 166 PNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERH 225
N +A +V RQE+DLRIG AFTR+Q++F K +A LIS+GPCQ PTLGF VE
Sbjct: 165 INRNDAAAVKLRQEIDLRIGSAFTRFQSQF---KGMLQNAELISFGPCQFPTLGFVVEAF 221
Query: 226 DKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS 285
PE +W ++ + + + V++ W R +F K + + + V+ V
Sbjct: 222 FNHIKHVPESFWKIEPLITKDNIKVTLKWDRKRLFCKLSAFAIYVDILDNPMAKVLTVDE 281
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF-- 343
KP L+T+EL R S L + +M+ AE+LY G +SYPRTET + +F
Sbjct: 282 RESLSNKPLPLSTIELQRRCSKYLKISAQRSMEAAEKLYQNGCISYPRTETDSFSADFKF 341
Query: 344 -DLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAW 401
D+V L + + + G + ++L I PR GK + HPPI P K+ + D
Sbjct: 342 KDIVNALTRFKG--EIGQYSNKILQQ-IVPPRAGKHSDNAHPPIYPIKVPDKFDTP-DQQ 397
Query: 402 RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI 461
++++++ RHF+ D V F + E F ++ +L + + + K I
Sbjct: 398 KVFEFVCRHFLACCSKDGVSLATRVTFDINGEQFHLKGTRVLEENWHEIYPYIPFKGTKI 457
Query: 462 PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
P+FK +LI ++++ E KTT P LTE +L+ M + GIGTDA+ HI I +R Y+
Sbjct: 458 PEFKVDELISPTNIELNEGKTTAPPLLTEPDLLKKMNQEGIGTDATYQDHIAKIMERKYI 517
Query: 522 TVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
V PT LG+ L GY+ + + ++P +R+
Sbjct: 518 -VQENNYFKPTPLGLALNDGYEGMGFDFMKPRLRA 551
>gi|126459728|ref|YP_001056006.1| DNA topoisomerase [Pyrobaculum calidifontis JCM 11548]
gi|126249449|gb|ABO08540.1| DNA topoisomerase [Pyrobaculum calidifontis JCM 11548]
Length = 596
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 179/512 (34%), Positives = 260/512 (50%), Gaps = 24/512 (4%)
Query: 55 SVCGHIMGLDFTSKYNNWDKVDPLELFSCP---TEKREATPKLKLPAFLANEAKDCEFLV 111
+ GHIM DF ++ N W + P +LF + EA +K LA A + +
Sbjct: 46 GLMGHIMDFDFAARENVWTWIPPEQLFHATPLLVIRDEAAQYVKALQSLARRADE---VY 102
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
L LD D EGE I +E AVR +N ++R +F+A+T KDI+AA N+
Sbjct: 103 LALDADVEGEAIAYEAAIAVR---AVNRRARLYRVKFNAVTPKDIRAAFQKPDTLNLKLV 159
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
V R ++DL +G FTR T + +SYGPCQTP LG V R + F
Sbjct: 160 EKVFTRMQIDLTLGAVFTRALTLSVRNSLEK--GQFLSYGPCQTPVLGIVVNRELERINF 217
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
KPE Y+++ +++ G V + + K+ A ++ V V K +
Sbjct: 218 KPEKYYVIKAVVDIGGHRVEMG---SEVRYKTRAEAEAAASLIKRGVVKAAVYRPHKVEP 274
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
P+ L TVEL R AS LG+ + +AE LY GY+SYPRTETT YP + DL VL Q
Sbjct: 275 -PEPLETVELERRASRWLGINSKKTLDVAEELYRAGYISYPRTETTIYPPSLDLREVL-Q 332
Query: 352 QESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQL-------DGDAWRLY 404
+ + + G++ R +L G R D G HPPI PTK AT+ +L AW +Y
Sbjct: 333 ELAKGEHGEYARGLLKAGFRPTRGDSDDGAHPPIYPTKGATKDELYRRFGKAAAYAWPIY 392
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDF 464
D++VRHF+ TL V ++ S E + L G+ + W + +P
Sbjct: 393 DFVVRHFLATLSPPAVVEKQKIVVSFGKIELEAEGQRTLDEGYWRIYPWERQAEKPLPVV 452
Query: 465 KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524
KPG+ V +VER+T PP +TESEL++LM+K+GIGTDA++ HI+ +R Y+ +
Sbjct: 453 KPGEAAYAVKVSVVERETQPPPPMTESELLALMKKYGIGTDATMQDHIHTNVKRGYMRLQ 512
Query: 525 SGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
G + PT LG+ L + EL+EPT+R+
Sbjct: 513 KG-KCTPTPLGMALATALFQYVPELIEPTVRA 543
>gi|352682630|ref|YP_004893154.1| topoisomerase (DNA) III alpha [Thermoproteus tenax Kra 1]
gi|350275429|emb|CCC82076.1| topoisomerase (DNA) III alpha [Thermoproteus tenax Kra 1]
Length = 606
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 169/511 (33%), Positives = 257/511 (50%), Gaps = 22/511 (4%)
Query: 56 VCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLD 115
+ GHI+ DF + N W+ ++P+ELF T +K L A+D + + L LD
Sbjct: 47 LSGHILDFDFPQELNKWNALEPVELFDKITVLVPRDETIKYLYALRALARDEDEVYLALD 106
Query: 116 CDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVD 175
D EGE I +EV+ VR +N R RF+A+T KDI A V+ ++ V
Sbjct: 107 ADSEGEAIAYEVVLQVRA---VNPRARFKRVRFNAVTKKDIVQAFERPVELDLKVVEKVF 163
Query: 176 ARQELDLRIGCAFTRYQTKFFQGKYGDLD------ASLISYGPCQTPTLGFCVERHDKIR 229
AR DL IG AFTR T + ++D +SYGPCQTP LG V R +
Sbjct: 164 ARMVSDLTIGAAFTRLLTLAVR----EVDNKALPFGKFLSYGPCQTPVLGLVVSRELERL 219
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKS 289
FKPE Y+++ + + +R F + V++ +
Sbjct: 220 NFKPEEYYVVKGIVETEAGSFE---ARSRPFKAREEAEAAVRAARVSLGKVIEARFEETR 276
Query: 290 KTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL 349
P L+TVEL R AS L + A+ AE LY +GY+SYPRTETT YP DL AVL
Sbjct: 277 VKPPAPLDTVELERRASKWLNIRAKAALDTAEELYRRGYISYPRTETTIYPPTLDLRAVL 336
Query: 350 RQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQ----LDGDAWRLYD 405
++ ++ +G + +L IS R D HPPI PT+ AT+ + L AW+LY+
Sbjct: 337 -EELTNTQFGQYAERLLRGPISPTRGNSDDRAHPPIYPTRGATKAEVERALGTRAWKLYE 395
Query: 406 YIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFK 465
++VRHF+ TL + ++ + + E + ++ G+ + + ++ +P +
Sbjct: 396 FVVRHFLATLSPPAIVERQRIAVAFGPLVLEAEGRRIIERGYWEIYPYEEEEDRRLPRVQ 455
Query: 466 PGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS 525
G + S K+ ++KT PP ++ESEL+ LM+K+GIGTDA++ HI+ R Y+ +
Sbjct: 456 AGVWARMVSAKIEKKKTEPPPRMSESELLRLMKKYGIGTDATMQDHIHTNVIRGYMRIVG 515
Query: 526 GRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
G R VPT LG+ L R +++PT+RS
Sbjct: 516 G-RCVPTKLGMTLASSLMNHARPIIDPTVRS 545
>gi|387592248|gb|EIJ87272.1| hypothetical protein NEQG_02607 [Nematocida parisii ERTm3]
gi|387597411|gb|EIJ95031.1| hypothetical protein NEPG_00556 [Nematocida parisii ERTm1]
Length = 853
Score = 265 bits (676), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 177/532 (33%), Positives = 271/532 (50%), Gaps = 22/532 (4%)
Query: 32 NGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREAT 91
N CSV + + G TSV GH+ L+F K +W ++DP+ELF + R
Sbjct: 32 NKYCSVFRFNHCIEGIPCEMVFTSVLGHLYSLEFAKK-TSWTEIDPIELFE--EDIRWII 88
Query: 92 PK--LKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
PK + L + +KDC+ L++W DCD+EGENI +V VR +I + V RARFS
Sbjct: 89 PKEMADVSRTLVHLSKDCDMLIIWTDCDREGENIGMQVANLVRDRI-----REVKRARFS 143
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDA-SLI 208
++ D+ A+ NL + N +E+++V++R E+DLRIG A TR QT Q LD+ S+I
Sbjct: 144 GLSKYDVMHAVENLCRLNAYESKAVESRIEIDLRIGAALTRLQTLQLQN---ILDSKSVI 200
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVF 268
SYG CQ PTLGF ER + I F E W ++ + NG W RG ++D+ +
Sbjct: 201 SYGSCQIPTLGFVCEREESIEEFVEEKNWTIEAEVQNNGERGVFKWERGVVYDEDYAGIK 260
Query: 269 FKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHA-MQIAERLYTQG 327
+ + E+ V V V+ + K++P L TVEL + + G G+ H M IAE LYT G
Sbjct: 261 LRTISGEELV-VNKVEIKKRHKSRPWPLRTVELQKFFARGHGVSSSHELMNIAESLYTSG 319
Query: 328 YVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITP 387
Y+SYPRTET + F+ L + ++ ++++ S R H PI P
Sbjct: 320 YISYPRTETDVFSSQFNYKDPLAALKGDSVLSEYAKKLVPGRPSAGRHNDQA--HTPIYP 377
Query: 388 TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
K + L G +Y+YI R F+ D +++ + V +E F + ++ +
Sbjct: 378 LKAGS--GLKGKERAVYEYIARRFLACYSADAEGEEELIECQVKEEKFIRKMLKVIKKNY 435
Query: 448 TGVMTWSAMKNESIP-DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDA 506
+ + + I K G + K E T P LTE+ELI+ M+ +GIGTDA
Sbjct: 436 LEIFIYEKWGDTEIDLALKEGQTVKWAPNKK-ESHTNKPHLLTEAELIAKMDSNGIGTDA 494
Query: 507 SIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAY 558
+I HI I R Y+ + + + T LG L++GY+ I + +P +R +
Sbjct: 495 TIHDHIERIKTRMYIEMINKNSIRSTWLGRSLINGYKSIGLTINQPYLRKEF 546
>gi|343420183|emb|CCD19182.1| DNA topoisomerase, putative [Trypanosoma vivax Y486]
Length = 803
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 177/515 (34%), Positives = 260/515 (50%), Gaps = 24/515 (4%)
Query: 54 TSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLW 113
TSV GH+ DF ++ NW PL+LF+ K ++ L + + L LW
Sbjct: 4 TSVAGHLTNDDFPAQTKNWSSFPPLDLFTVGITKHVKPELEQVKRNLESLGRQSTTLALW 63
Query: 114 LDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARS 173
+DCD+EGENICFEVM V+ +N V RA F +T D+ A+ NL + +
Sbjct: 64 MDCDREGENICFEVMSVVQ---TVNRQIEVCRAHFPTLTRGDLFTAVHNLKTLKKALSDA 120
Query: 174 VDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKP 233
V+ARQE+DLRIG F+R+QT F+ + D+ ++++GPCQ PTLGF V R R F P
Sbjct: 121 VEARQEIDLRIGAVFSRFQTIKFRDMFRDM-PRVLNFGPCQIPTLGFVVRRSWDQRGFVP 179
Query: 234 EPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAV-----EKEKHVTVVDVQSSTK 288
E Y+ TL L+ + G ++D+ + +A+ EK + VQ +
Sbjct: 180 EEYF----TLALHHRQTVFSSCPGSMYDQIAATLVLEAIQESASEKPEAEVTEGVQRPNR 235
Query: 289 SKTKPQALNTVELMRVASSGLGMGPHHAMQIAE-RLYTQGYVSYPRTETTQYP-ENFDLV 346
+ P L TV L ++A++ L + M LY +GYVSYPRTET + + +L+
Sbjct: 236 -RHPPVQLATVVLQKLAATHLRISSEKCMMWGGVSLYQEGYVSYPRTETDSFSLTDNELL 294
Query: 347 AVLRQQESSPDWGDHVREVLS---NGISKP-RKGKDVGDHPPITPTKLATRTQLDGDAWR 402
Q + + G +V +L N +P R G D H PI PTKL + +
Sbjct: 295 ETAGLQSGNSEVGQYVSAMLGDRQNRFRRPLRGGHDDKAHLPIYPTKLMPSS--NDPRMP 352
Query: 403 LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP 462
LY+ IVRHF+ + D V +E FT +L G+ V + + IP
Sbjct: 353 LYNLIVRHFLACVSPDAVAATTSVTAVFGEEKFTTSGTAVLERGWLEVYPYERWHSTCIP 412
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT 522
+K G+ +V + +TTPP TE+ LI+LM+KHGIGTDA+I HI + R YV
Sbjct: 413 AYKRGERFTPTAVNLERHRTTPPSNPTEANLIALMDKHGIGTDATIAQHIKTVLDREYVK 472
Query: 523 VTSGRRLVPTSLGIVLVHGYQKIDR-ELVEPTMRS 556
G LVPT+LG L Y+ + L++P +R+
Sbjct: 473 -REGTSLVPTTLGNALASAYEAVGLVSLLQPQLRA 506
>gi|307596564|ref|YP_003902881.1| DNA topoisomerase [Vulcanisaeta distributa DSM 14429]
gi|307551765|gb|ADN51830.1| DNA topoisomerase [Vulcanisaeta distributa DSM 14429]
Length = 618
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 168/509 (33%), Positives = 254/509 (49%), Gaps = 19/509 (3%)
Query: 58 GHIMGLDFTSKYNNWDKVDPLELFSCP--TEKREATPKLKLPAFLANEAKDCEFLVLWLD 115
GH+M +DF + N W V+P +LF RE T + L+ + L LD
Sbjct: 54 GHMMDVDFPEELNKWHSVEPSKLFDAEPILVIREDT--ISYVRALSRLGASASVVYLALD 111
Query: 116 CDKEGENICFEVMEAVRHQININSPKTVW-RARFSAITDKDIKAAMWNLVKPNIFEARSV 174
D EGE I +E M +R+ +P+ V+ R FSA+T DI A + N A+ V
Sbjct: 112 ADSEGEAIAYEAMLVIRNA----NPRAVFKRVLFSAVTKSDIIEAFNSPTSLNPGLAKRV 167
Query: 175 DARQELDLRIGCAFTRYQTKFFQ--GKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
R LDL +G FTR T + K S +SYGPCQTP L V+R + FK
Sbjct: 168 FTRMILDLTLGAVFTRALTLSVEKTDKNALARGSFLSYGPCQTPVLNLVVQRALERENFK 227
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE Y+ L + +N+NGV V++ G DK V + V+
Sbjct: 228 PEKYYTLHIIVNVNGVRVTLNHD-GTFKDKQEAERVLSLVRGKARAMVIIANYKEDFIEP 286
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L+T+EL R AS L + P A+ IAE LY GY+SYPRTETT YP L +L +
Sbjct: 287 PVPLDTIELERRASRFLNIRPKAALDIAEELYRHGYISYPRTETTIYPPTLSLRQILLEL 346
Query: 353 ESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQL-----DGDAWRLYDYI 407
+ + GD+ + +L I + G HPPI PT+ TR ++ + W++YD +
Sbjct: 347 -THGEHGDYAKTLLGMSIKPTHGDSNDGAHPPIYPTRGVTRQEILRYFKNEKYWKIYDLV 405
Query: 408 VRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPG 467
VRHF+ TL ++ ++ F+++ ++ G+ + + + + +P +
Sbjct: 406 VRHFLATLSPPARVERQKIVVEISGHRFSVDGLKIIDKGYLTIYPFESPSEKVLPRVRVS 465
Query: 468 DLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGR 527
D + I + ER+T PP YL+ESEL+ LM+K+GIGTDA++ HI+ R Y + + +
Sbjct: 466 DELSIVKAWIEERETEPPPYLSESELLRLMKKYGIGTDATMQDHIHTNVIRGYFKIRN-K 524
Query: 528 RLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
+ +PT LG ++ K EL++P RS
Sbjct: 525 QCIPTPLGKAVISVLSKTGNELIDPLFRS 553
>gi|380486032|emb|CCF38971.1| DNA topoisomerase, partial [Colletotrichum higginsianum]
Length = 462
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 211/402 (52%), Gaps = 4/402 (0%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MT+V GH+ GLDFT + NW P LF+ P K + + +A+ C+ L++
Sbjct: 55 MTAVVGHLTGLDFTPENKNWSHPPPESLFTAPVVTFVPQDKKTVAENIERQARYCQLLII 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I E++ A R NS V RA FS I I A L + +
Sbjct: 115 WTDCDREGEHIGKEIVNAARKG---NSRIAVKRATFSNIERAHILTAARRLTDLDQKQVD 171
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+VDAR ELDLRIG AFTR+ T + G L ISYG CQ PTLGF V+R+ +++ F
Sbjct: 172 AVDARIELDLRIGYAFTRFLTNSLRPLGGPLQERTISYGSCQFPTLGFVVDRYFRVQNFV 231
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE +W + + + G V+ WSR +FD+ + + ++ + TV VQ K K
Sbjct: 232 PEQFWSIKVMHSREGKKVNFNWSRNRLFDRMSVIILYERCIRANKATVTKVQEKPTRKWK 291
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TVEL + A+ L M AM +AE LY +G++SYPRTET ++ + DL A++R+Q
Sbjct: 292 PLPLTTVELQKAATRLLRMSGQQAMTVAEGLYNKGFISYPRTETDRFDKGIDLKALVRKQ 351
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
WG++ + +L +PR+GK D HPPI P A T L+ D +LY+Y+VR F
Sbjct: 352 TPDNRWGEYAQGLLDGNFQQPREGKHDDKAHPPIHPVTYAAPTVLNADERQLYEYVVRRF 411
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
+ D + +E F +L + V +
Sbjct: 412 LACCSEDAKGLATDVEILYGEETFHARGLVVLERNYLDVFVY 453
>gi|302656146|ref|XP_003019829.1| hypothetical protein TRV_06117 [Trichophyton verrucosum HKI 0517]
gi|291183601|gb|EFE39205.1| hypothetical protein TRV_06117 [Trichophyton verrucosum HKI 0517]
Length = 622
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 169/536 (31%), Positives = 252/536 (47%), Gaps = 60/536 (11%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLA 101
GP +G + MTSV GH+ DF +Y NW+ +P +LF+ KL + +
Sbjct: 44 GPPWGSCSVV-MTSVLGHLTASDFEPRYRNWNSCNPSQLFAANVIIAVDKEKLGIARNIK 102
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAM 160
+A+D L +W DCD+EGE+I EV R Q + +P + RARFS + A
Sbjct: 103 RQARDSRALFIWTDCDREGEHIGSEV----RDQAVLGNPSIEIKRARFSNTERTHVLEAA 158
Query: 161 WNLVKPNIFEARSVDA---RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPT 217
+P + R VDA R ELDLRIG AFTR QT Q G L +ISYG CQ PT
Sbjct: 159 R---RPTGLDERQVDAVAARIELDLRIGAAFTRLQTLQLQTLGGALAEKIISYGSCQFPT 215
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKH 277
LGF V+R+ +++ FKPE +W + ++ +G+ V+ W RGH+FD++ V F+ K
Sbjct: 216 LGFVVDRYMRVKNFKPEAFWSIKVSHTRDGITVNFNWQRGHLFDRAAVVVLFERCLAAKI 275
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
TV V SK +P L TV+L + S L + M
Sbjct: 276 ATVTKVNKKPTSKWRPLPLTTVDLQMMGSKYLRIDSQAIM-------------------- 315
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVR-----------EVLSN-----GISKPRKGKDVGD 381
++ DL ++ +Q S WG++ R E +N G +PR+G++
Sbjct: 316 KFDNEIDLKKLVEKQYPSEAWGEYARGSVFSTNTILAEFHTNPSRCGGFKQPRRGRNNDK 375
Query: 382 -HPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
HPPI P + T L+ + ++Y+++ R F+ D + DE F
Sbjct: 376 AHPPIHPVAYVSPTVLNANEEKVYEFVTRRFLACCSEDAEGESTDIEIQYGDEEFHTRGL 435
Query: 441 YLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
+L + V + + ++ +P+F + + + E KT P YLTE ELI LM+
Sbjct: 436 VVLERNYLDVYVYDKWESSQPLPNFVLNESFEPKEANITEGKTVAPGYLTEPELIGLMDA 495
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGR----------RLVPTSLGIVLVHGYQKI 545
+GIGTDA++ HI+ I R YV +PT LG+ LV GY +
Sbjct: 496 NGIGTDATMAEHISKIKAREYVATRPRGGGRGSGGRVDEFIPTKLGVALVEGYDNV 551
>gi|47212929|emb|CAF90301.1| unnamed protein product [Tetraodon nigroviridis]
Length = 241
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 125/188 (66%), Positives = 149/188 (79%), Gaps = 3/188 (1%)
Query: 58 GHIMGLDFTSKYNNWDKVDPLELFS-CPTEKREATPKLKLPAFLANEAKDCEFLVLWLDC 116
G + L+ SKYNNWDKVDP ELFS PTEK+EA+PKL + FL EAK C ++VLWLDC
Sbjct: 55 GVLRTLNSLSKYNNWDKVDPAELFSKAPTEKKEASPKLNMIKFLQAEAKGCHYVVLWLDC 114
Query: 117 DKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDA 176
DKEGENICFEV+ + K+V+RA+FS+ITD DI AM L +PN EA +VDA
Sbjct: 115 DKEGENICFEVISVINK--GSTREKSVYRAKFSSITDTDICKAMNCLGEPNHNEALAVDA 172
Query: 177 RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPY 236
RQELDLRIGCAFTR+QTK+FQGKYG+LD+SLIS+GPCQTPTLGFCVERHDKI++FKPE Y
Sbjct: 173 RQELDLRIGCAFTRFQTKYFQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETY 232
Query: 237 WLLDLTLN 244
W+L +N
Sbjct: 233 WILQAKVN 240
>gi|429966189|gb|ELA48186.1| hypothetical protein VCUG_00424 [Vavraia culicis 'floridensis']
Length = 849
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 180/551 (32%), Positives = 264/551 (47%), Gaps = 72/551 (13%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
TSV GH+ +FT W + DP+ LF+ + L L + + + +V+
Sbjct: 48 FTSVLGHLYTQEFTEN-RKWTECDPIALFTTNITEYIKDEFRALKENLQHLSASADKVVI 106
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I E+ + + Q WRARFSAIT +I AM + + + +
Sbjct: 107 WTDCDREGEYIALEIQKLLGRQ--------CWRARFSAITRDEIIRAMESYREIDTKQCD 158
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
SV AR ELDLRIG +FTR QT D ++ISYG CQ PTLGF VER + + F
Sbjct: 159 SVAARMELDLRIGASFTRLQTLNLAA-----DKNVISYGSCQIPTLGFVVERALERKDFV 213
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV-DVQSSTKSKT 291
E ++ L +++ + + +W RG+IFDK+ FF+ + E VV +V ++
Sbjct: 214 AEKFFTLKISIVKDRMVNIFSWVRGNIFDKNCVLYFFRYLTDETSKAVVTNVNKGNVTRF 273
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
+P L TV++ RV S M H MQ+AE LY +G +SYPRTET +P NFD V +
Sbjct: 274 RPLPLRTVDMQRVLSK--SMPSHKVMQVAEALYQRGIISYPRTETDSFPANFDYNKVKTE 331
Query: 352 QESSPDWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKLATRTQLDGDAWRLYDYIVRH 410
+ V + PR G++ H PI P K + L D +Y++I
Sbjct: 332 ILKGNRYN-----VQNTTFKGPRNGRNNDFAHLPIYPLKHP--SNLAVDEKMVYNFIADR 384
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLI 470
FI ++ D + + V S+ DE FT++ ++ GF + ++I F+ G+
Sbjct: 385 FIASISDDALLEEHVVHLSMKDENFTLKGTKIVKHGFLKFYHHDRVSEKNIGVFREGERF 444
Query: 471 PIQ-------------------------SVKMVER---------------------KTTP 484
I + MV+R T P
Sbjct: 445 EISRMDSIYPLGEDSRTKPDNEHDNTSGNADMVDRLQNMSKCEPQFKQNSIFVNEGLTKP 504
Query: 485 PDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQK 544
P+YLTESELI+LM+K+GIGTDA+I HI I R Y T + +PT+LG L+ Y+
Sbjct: 505 PNYLTESELIALMDKNGIGTDATIHEHIKKILDRKY-TFKKAKYFIPTNLGHGLICCYKT 563
Query: 545 IDRELVEPTMR 555
+D L +P R
Sbjct: 564 LDLNLDKPDYR 574
>gi|397641070|gb|EJK74455.1| hypothetical protein THAOC_03864, partial [Thalassiosira oceanica]
Length = 948
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 179/574 (31%), Positives = 274/574 (47%), Gaps = 61/574 (10%)
Query: 48 LVLFKMTSV--------CGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAF 99
++++++T+V C + DF S Y W +V+P+ LF P L
Sbjct: 88 VLVYELTAVTCCCKLIACSSPLRQDFPSSYG-WRRVNPVALFDAPINTTYKEDMQPLERM 146
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVME-AVRHQININSPKTVWRARFSAITDKDIKA 158
L + A+ L+LWLDCD+EGE I EV +R + S ++RA+FS + +I+
Sbjct: 147 LRDLARRASALILWLDCDREGEAISDEVRTVCLRGNARLGSQNRIFRAKFSTVMPGEIQR 206
Query: 159 AMWNLVKPNIFEARSVDARQELDLRIGCAFTRY------------QTKF---FQGKYGDL 203
A+ L + N ++V+AR E DLR R Q ++ L
Sbjct: 207 ALRTLGRVNENLVKAVEARSEHDLRYWLCRGRSSVYAMVNVSVSKQVRWVCRLNLNMTSL 266
Query: 204 DA----SLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN------------- 246
A +ISYGPCQ PTLGF VER +I+TF E +W L++T+ LN
Sbjct: 267 HALTLDQVISYGPCQFPTLGFVVERWARIQTFVKEDFWFLEMTIRLNADGSVVNNIPAQG 326
Query: 247 ----------GVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQAL 296
G A+S+TW R ++D++ + A + V DV K+K +P L
Sbjct: 327 VNNVYNNQQQGRAISLTWKRVRLYDRTMTLAIYDACLEAGEAVVTDVSGRPKNKWRPIPL 386
Query: 297 NTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ-QESS 355
TVEL + AS L +G MQ AE LY GY+SYPRTET ++ F+ +++ +
Sbjct: 387 ATVELQKRASKYLRIGSEVLMQKAESLYNNGYISYPRTETERFRPEFNHHDLIQSFHAVN 446
Query: 356 PDWGDHVREVLSNG-ISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWR-LYDYIVRHFI 412
+ G++ + +LSN PR G D HPPITP K ++ R +Y +V+H++
Sbjct: 447 GELGNYAQLLLSNNNFQNPRAGPNDDNAHPPITPAKAVNPEEIADPIERNIYSLVVKHYL 506
Query: 413 GTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM----TWSAMKNESIPDFKPGD 468
D V + +A E F+ + +L + + WS + +P + G
Sbjct: 507 ACCSRDAVGRETELTLKIASEEFSAKGLMILERNWLEIYHPWEKWSTGQG-VLPKARVGT 565
Query: 469 LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRR 528
I S+ M + T PP+ ++E ELIS M+K+GIGTDA+I HI I R Y + +R
Sbjct: 566 RITPTSLMMRDGATAPPNLISEVELISAMDKNGIGTDATIAQHITTILDRGYCVKDASQR 625
Query: 529 LVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQA 562
P LGI LV GY + +L +P +R + +
Sbjct: 626 FNPNPLGIALVEGYNSMGHQLNKPDLRRSMEAEC 659
>gi|73669624|ref|YP_305639.1| DNA topoisomerase, type I [Methanosarcina barkeri str. Fusaro]
gi|72396786|gb|AAZ71059.1| DNA topoisomerase, type I [Methanosarcina barkeri str. Fusaro]
Length = 855
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 168/531 (31%), Positives = 256/531 (48%), Gaps = 42/531 (7%)
Query: 55 SVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWL 114
+ GHIM DF +YN W +V+P L +K + A + N AK +VL
Sbjct: 49 GLSGHIMNYDFPEQYNKWKEVNPGVLLEIDPQK--LVTRTDYAAAVKNLAKRANKIVLAC 106
Query: 115 DCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSV 174
D D+EGENI FE N+ + RARFS+++ K++K A +L+ P+ A +
Sbjct: 107 DYDREGENIGFEAKTLAEKVTNV----PIERARFSSLSPKEVKKAFESLINPDYNMAMAA 162
Query: 175 DARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPE 234
+ARQ LDL++G AFTR+ T + + D ++S GPCQTPT GF ER IR F+ +
Sbjct: 163 EARQILDLKMGAAFTRFVTLSVRERARTKD--ILSIGPCQTPTCGFVYEREKAIRAFQAK 220
Query: 235 PYWLLDLTLNLNGVAVSVTWSR--------------------GHIFDKSTCNVFFKAVEK 274
+W + + R G+I DK FK ++
Sbjct: 221 DFWKITAIFSAESGKEGGKEGRKEGRKEGKKERGDFEGTHRAGNIHDKEKAAEIFKRLKG 280
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRT 334
K V + P LNT E ++ AS LG+ P A+++AE+LY G+ SYPRT
Sbjct: 281 TKEGLVAKKTVKETKTSPPNPLNTTEFLKRASKFLGISPELALEVAEQLYLAGFTSYPRT 340
Query: 335 ETTQYPENFDLVAVL----RQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKL 390
ET +Y E+FD +++ RQ+E P +L I KD DHPPI P +
Sbjct: 341 ETNKYAEDFDFKSLVFDFARQKEYKP----FAESILIAPIVPKNGEKDAHDHPPIHPIRA 396
Query: 391 ATRTQLDG-----DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHP 445
A+R ++ A +Y+ I RHF+ L V+ + V +E F L
Sbjct: 397 ASRGEVSSAVNIPQAPEVYNLIARHFLANLMPAAVFEKTHLHLLVNEEPFDSSGTVLKDS 456
Query: 446 GFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
G+ + K++ +P + G + ++ + + KT+PP LTE+EL++LM+K+GIGT
Sbjct: 457 GWLEAYPFENKKDKLLPFVEEGQKVGVKKLSNTKSKTSPPKKLTEAELLTLMDKNGIGTK 516
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
A+ P HI +R Y+ T G+ + G L+ G LV+P +R+
Sbjct: 517 ATAPTHIETNKKRGYLE-TKGKTISILDTGFTLMDGLSLTVPILVKPEIRA 566
>gi|325968322|ref|YP_004244514.1| DNA topoisomerase [Vulcanisaeta moutnovskia 768-28]
gi|323707525|gb|ADY01012.1| DNA topoisomerase [Vulcanisaeta moutnovskia 768-28]
Length = 618
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 167/506 (33%), Positives = 246/506 (48%), Gaps = 13/506 (2%)
Query: 58 GHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCD 117
GHIM +DF+ + N W V+P +LF L L + + L LD D
Sbjct: 54 GHIMNVDFSEELNKWHSVEPSKLFDVEPILVIRGDDLNYVRALTHLGASANTVYLALDAD 113
Query: 118 KEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDAR 177
EGE I +E M +R N+N R FSA+T I A + N A+ V R
Sbjct: 114 PEGEAIAYEAMFVIR---NVNPGAVFKRVLFSAVTRNAIIEAFNSPTNLNPGLAKRVFTR 170
Query: 178 QELDLRIGCAFTRYQTKFFQ--GKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEP 235
LDL +G FTR T + + S +SYGPCQTP L V+R + FKPE
Sbjct: 171 MVLDLTLGAVFTRALTLSVEKIDRKALSRGSFLSYGPCQTPVLNLVVQRALERENFKPEK 230
Query: 236 YWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQA 295
Y+ L + ++ +G + + G D+ V V+ P
Sbjct: 231 YYTLHIIVDADGKRIMLDHD-GVFKDRQEAEKILNLVRSMAKAKVIIASYKEDFLGPPVP 289
Query: 296 LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESS 355
L+T+EL R AS L + P A+ IAE LY GY+SYPRTETT YP L VL + +
Sbjct: 290 LDTIELERRASRFLNIRPKAALDIAEELYRHGYISYPRTETTIYPPTLSLKQVLLEL-TH 348
Query: 356 PDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQL-----DGDAWRLYDYIVRH 410
+ GD+ + +L I R + G HPPI PT+ +R +L + W++YD +VRH
Sbjct: 349 GEHGDYAKTLLGMTIKPTRGNSNDGAHPPIYPTRGVSRQELLRYFKNERYWKIYDLVVRH 408
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLI 470
F+ TL ++ V D F+ + ++ G+ + + + + +P K GD +
Sbjct: 409 FMATLSPPARIERQRIVVEVVDHRFSTDGLRMIDKGYLVIYPFESPSEKVLPRVKLGDEL 468
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLV 530
I + ER+T PP YL+ESEL+ LM K+GIGTDA++ HI+ R Y V + ++ +
Sbjct: 469 SIIKAWVEERETEPPPYLSESELLRLMRKYGIGTDATMQDHIHTNIIRGYFRVRN-KQCI 527
Query: 531 PTSLGIVLVHGYQKIDRELVEPTMRS 556
PT LG +++ + K EL++P RS
Sbjct: 528 PTPLGKAVINVFSKTGGELIDPWFRS 553
>gi|154150402|ref|YP_001404020.1| DNA topoisomerase [Methanoregula boonei 6A8]
gi|153998954|gb|ABS55377.1| DNA topoisomerase [Methanoregula boonei 6A8]
Length = 942
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 171/524 (32%), Positives = 262/524 (50%), Gaps = 44/524 (8%)
Query: 45 FGDLVLFKMTSVCGHIMGLDFTSKYNNW--DKVDPLELFSC-----PTEKREATPKLKLP 97
FGD + + GH++ +DF Y NW +K P L PTEKR +
Sbjct: 38 FGDTITVGLR---GHVVEVDFEPGYENWRSEKYTPRSLIDAKTIKVPTEKR-------IV 87
Query: 98 AFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIK 157
+ + A+ + + + D D EGE I E E VR +N + RARFSAIT ++I
Sbjct: 88 SLVQKLARHADRVTIATDFDTEGELIGKEAYELVR---AVNKNVKIDRARFSAITAQEIG 144
Query: 158 AAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPT 217
+A N + A + +ARQ +DL G + TR+ + K G +++S G Q+PT
Sbjct: 145 SAFANTTDLDFALAAAGEARQSIDLMWGASLTRFIS--LAAKRGG--NNILSVGRVQSPT 200
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKH 277
L V+R +I F PE YW L L G + + G D+ + A ++ K
Sbjct: 201 LSMIVDREKEIEKFVPEKYWQLGLLTEKAGEQIEARHTNGRFKDQKAAEL---ARDRTKE 257
Query: 278 -VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTET 336
+ V +V+ TK P +T + VA++ LG +AM+IAE LY GY+SYPRT+
Sbjct: 258 PLVVTEVREGTKQDRSPSPFDTTTYI-VAAARLGFSAANAMRIAEELYMNGYISYPRTDN 316
Query: 337 TQYPENFDLVAVLRQQESSP-----DWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKL 390
T YP + DL VL +SP DW ++S+ ++P +GK DHPPI PT +
Sbjct: 317 TVYPASLDLNGVLATIRNSPFTKDVDW------IISHRRAEPTRGKKSSTDHPPIYPTGV 370
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
ATR + DA+R+Y+ ++R F+ TL D ++ F E +T+ LL PG+ V
Sbjct: 371 ATREGIGDDAFRIYELVLRRFLATLAPDALWKTLKVNFEAGGETYTVTGGLLLEPGWHAV 430
Query: 451 MTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPV 510
+S K +P F G+ +PI+ V + E++T PP T+S+LI ME+ G+GT ++
Sbjct: 431 YPFSEAKETILPAFVTGEKLPIRKVNLEEKETLPPARYTQSKLIQRMEELGLGTKSTRHE 490
Query: 511 HINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
I + R Y+ G L PT +G V+ ++ + +P M
Sbjct: 491 VIARLVSRKYI---EGNPLRPTLVGRVVTEALEQNADTITKPEM 531
>gi|327310010|ref|YP_004336907.1| DNA topoisomerase [Thermoproteus uzoniensis 768-20]
gi|326946489|gb|AEA11595.1| DNA topoisomerase [Thermoproteus uzoniensis 768-20]
Length = 602
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 174/513 (33%), Positives = 253/513 (49%), Gaps = 24/513 (4%)
Query: 55 SVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPK---LKLPAFLANEAKDCEFLV 111
+ GHI+ DF + N W VDP LF E TP+ LK L + A+ + +
Sbjct: 46 GLSGHILDFDFPQEMNRWGAVDPARLFD---EAVVLTPRPETLKYLYALRSLARGQDVVY 102
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
L LD D EGE I +EV+ VR +N R RF+A+T +I A V ++
Sbjct: 103 LALDADSEGEAIAYEVVLQVR---VVNPAARFKRVRFNAVTKAEITRAFARPVDLDLKVV 159
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDA----SLISYGPCQTPTLGFCVERHDK 227
V AR DL IG AFTR T + D A +SYGPCQTP LG V R +
Sbjct: 160 EKVFARMASDLTIGAAFTRLLT--LSVRREDSSALPFGKFLSYGPCQTPVLGLVVSRELE 217
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
FKPE Y+++ + G V + R F + A ++ + + +
Sbjct: 218 RLNFKPEEYFVVRAVVGTGGGEVEM---RSKPFKRREEAEAALAAARKAEGRIAEARYEK 274
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
P L TVEL R AS L + A+ IAE LY GY+SYPRTETT YP DL A
Sbjct: 275 AEVRPPVPLETVELERRASRWLNIRAKAALDIAEELYRLGYISYPRTETTIYPPTLDLRA 334
Query: 348 VLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGD----AWRL 403
+L + ++P +G + ++L + R D G HPPI PT+ A R +++ W++
Sbjct: 335 ILEELRNTP-FGQYAEDLLRRPFTPTRGRSDDGAHPPIHPTRGAGRGEIEARLGQRGWKI 393
Query: 404 YDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPD 463
Y+ +VRHF+ TL V ++ + + E + ++ G+ V + + E +P
Sbjct: 394 YELVVRHFLATLSPPAVVERQRIAAAFGPLVLEAEGRKVISKGYWTVYPYEEEEEEPLPY 453
Query: 464 FKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV 523
K GD + S K+ R T PP +TESEL+ LM K+GIGTDA++ HI+ R Y+ +
Sbjct: 454 VKRGDPAELLSAKIERRLTEPPPRMTESELLKLMRKYGIGTDATMQDHIHTNVLRGYMRI 513
Query: 524 TSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
G + +PT LG+ L K R +++P +RS
Sbjct: 514 AGG-KCIPTPLGMSLATALMKHARPIIDPEVRS 545
>gi|71026270|ref|XP_762816.1| DNA topoisomerase III [Theileria parva strain Muguga]
gi|68349768|gb|EAN30533.1| DNA topoisomerase III, putative [Theileria parva]
Length = 531
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 154/464 (33%), Positives = 242/464 (52%), Gaps = 68/464 (14%)
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDK----------DIKAA 159
++LWLDCD+EGE I FEV+E V +++ N V RA FS++T + DI+ A
Sbjct: 57 IILWLDCDREGEAIAFEVLE-VCYKVKKN--LIVRRAIFSSVTSQFTFHNWNSEPDIEHA 113
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
NL +PN A +V+ RQE+DLRIG A TRY T ++ + + A+++SYG CQ PTLG
Sbjct: 114 CVNLKEPNKNLANAVETRQEIDLRIGSAITRYLTLKYKTQI-NTKAAILSYGTCQLPTLG 172
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
F VER I F EP+W +++ + + + V+ W R IFD
Sbjct: 173 FVVERFILIENFISEPFWTINVEVTHDNIPVTFLWHRKRIFD------------------ 214
Query: 280 VVDVQSSTKSKTKPQALNTVELM-RVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQ 338
ELM + S L + H MQ+AE LY +GY+SYPRTET
Sbjct: 215 --------------------ELMNKDVSRFLRISSHRCMQLAESLYNKGYISYPRTETNA 254
Query: 339 YPENFDLVAVLRQQESSPDWGDHVREVLSNG-ISKPRKGKDVGD-HPPITPTKLATRTQL 396
+P + +L +++ S P++ + +L+ G +P KGK+ + HPPI P TR +
Sbjct: 255 FPSSINLKSIIHNLSSVPEFSQYTHNLLNEGGFKEPTKGKNNDEAHPPIHPVNSLTRDRA 314
Query: 397 DGDA-WRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSA 455
+ + W LY+YI R F+ D + Q ++ E+F ++ + + + +S+
Sbjct: 315 ESEQHWLLYEYITRRFLACCSKDAIGHQSNIILEISGELFNLKGLVIKERNWLNIYKYSS 374
Query: 456 MKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNI 515
+ + +P+F+ + T PPD L+ES LI LM K+GIGTDA++ HI I
Sbjct: 375 WEGKIVPEFQEN---------QEDGATRPPDLLSESNLIDLMNKNGIGTDATMHEHIQKI 425
Query: 516 CQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDR---ELVEPTMRS 556
R+Y R VPT+LG + +G+++ + +L +P++R+
Sbjct: 426 QDRHYCVKDDKLRFVPTNLGKAIYYGFKEYNYHNIDLTKPSLRA 469
>gi|296088524|emb|CBI37515.3| unnamed protein product [Vitis vinifera]
Length = 373
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 179/302 (59%), Gaps = 8/302 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+M L+F ++ W DP L+ P K KL + L EA+ C++LVL
Sbjct: 54 VTSVIGHLMELEFEDRFRKWHSCDPAHLYHAPVRKFVPEDKLDIKRTLEEEARKCQWLVL 113
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGENI FEV+E +N VWRARFSA+ D++I ++ NLV+PN A
Sbjct: 114 WLDCDREGENIAFEVLEVC---AQVNRHIDVWRARFSALIDREIHESVQNLVRPNQLFAD 170
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKY-----GDLDASLISYGPCQTPTLGFCVERHDK 227
+VD RQE+DLRIG +FTR+QT + + D ++SYGPCQ PTLGF VER+ +
Sbjct: 171 AVDVRQEIDLRIGASFTRFQTMLLRDAFVLDFAADDRNLVLSYGPCQFPTLGFVVERYWE 230
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
I++ +PE +W ++ + + + W R H+FD + + ++ +E TV V+
Sbjct: 231 IQSHEPEEFWTINCSHKSDEGTSTFNWMRAHLFDYTCAVIIYEMCIQEPTATVTKVRQQE 290
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
K K P LNT+EL + AS M H M++AE LY G++SYPRTET + E DL +
Sbjct: 291 KLKYPPHPLNTIELEKRASRYFHMSSEHTMKVAEDLYQTGFISYPRTETDYFSERTDLHS 350
Query: 348 VL 349
L
Sbjct: 351 YL 352
>gi|300120095|emb|CBK19649.2| unnamed protein product [Blastocystis hominis]
Length = 770
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 169/551 (30%), Positives = 261/551 (47%), Gaps = 68/551 (12%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK-LPAFLANEAKDCEFLV 111
+S+ GH+M LDF Y +W VDP LF P K PK+K + + NE + C+ L
Sbjct: 53 FSSMTGHMMELDFPDTYQSWRAVDPASLFQAPVFK-SVNPKMKAIYKQIQNEGRKCQALC 111
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
LWLDCD+EGENI FEV++ V+ +N+ ++ ++ + + P++ E
Sbjct: 112 LWLDCDREGENIAFEVIDCVK---KVNASVMIYHILYT----------LAMIFIPSLHEP 158
Query: 172 RS----------VDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
S + AR L +RI + +T+ + +SL S C T L C
Sbjct: 159 TSPPSSLPTFGTLSARSPLPMRIN---PKPRTRARKSISESAASSLASKPCCSTTPLLRC 215
Query: 222 VERHDKI-----------------RTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKST 264
+ + +T P P +D V + W+R H+FDK
Sbjct: 216 PTQSPTVLASFRRWASSWNAICSDKTSSPSP---IDHASQGTNQIVKLKWARNHLFDKLV 272
Query: 265 CNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY 324
F + EK V+ + KSK KP LNTVEL + + L + M+I E LY
Sbjct: 273 VATLFSLIANEKKGVVLQMNERKKSKFKPLPLNTVELQKRVARHLKISSEETMKICEALY 332
Query: 325 TQGYV----------SYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPR 374
+G++ SYPRTET + D ++++ Q + DWG + +++L + PR
Sbjct: 333 QKGFIRYEPNPPLIGSYPRTETAVFAAGTDFQSLIQVQSGASDWGTYAQKLLGGDFAPPR 392
Query: 375 KGK-DVGDHPPITPTKLATRTQLDG-----DAWR---LYDYIVRHFIGTLCGDLVYTQKV 425
GK D HPPI PTKL R DA R +Y+YI RHF+ + D V ++
Sbjct: 393 AGKGDDHAHPPIHPTKLLERVNAGSIGGGFDASRVFAIYEYITRHFLASCSRDSVLSETE 452
Query: 426 AKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPP 485
+ + E+F+ + + + V + + ++P F G+ + + S+ VE TT P
Sbjct: 453 LQVGIGTELFSAKGTIIRERNYLDVFKYERLNENTLPSFVVGEAVEVASLG-VEESTTAP 511
Query: 486 DYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKI 545
+ L+E ELI+LM+K GIGTDA+I HI I R+Y T R PT++G+ LV Y +
Sbjct: 512 ELLSEPELIALMDKEGIGTDATISEHIATIQNRDYAKKTPANRFTPTNIGLALVETYMYL 571
Query: 546 DRELVEPTMRS 556
L +P +R+
Sbjct: 572 QYPLYKPYLRA 582
>gi|336476645|ref|YP_004615786.1| DNA topoisomerase I [Methanosalsum zhilinae DSM 4017]
gi|335930026|gb|AEH60567.1| DNA topoisomerase I [Methanosalsum zhilinae DSM 4017]
Length = 762
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 172/562 (30%), Positives = 277/562 (49%), Gaps = 32/562 (5%)
Query: 1 MHLRVKKLVPASEIKLARPSLISLLTPLQ----RMNGACSVHEWVGPLFGDLVLFKMTSV 56
MHL + +E +A + S+L P + R+NG + F + + +
Sbjct: 1 MHLII------AEKNIAAKRIASILAPKKPKQSRVNGVDTYQ------FKNKEETVVIGL 48
Query: 57 CGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDC 116
GHI+ +DF +Y NW KV+ EL E K+ + L AK + + D
Sbjct: 49 SGHIVTVDFPPQYKNWQKVESRELIDA--EIVTVATHSKIVSVLKKMAKKATNVTIATDY 106
Query: 117 DKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDA 176
D+EGE I E + ++ N R R+SAIT K+I A N V + A + +
Sbjct: 107 DREGELIGVEALNILKKA---NPDLKFDRVRYSAITPKEINDAFSNPVSIDFNLAAAGHS 163
Query: 177 RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPY 236
RQ +DL G + TRY + G+ G++ +S G Q+PTL V+R + F P+PY
Sbjct: 164 RQVIDLVWGASLTRYLS-LVSGRLGNM---FLSVGRVQSPTLAIIVDREKERDEFVPKPY 219
Query: 237 WLLDLTL-NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQA 295
W +D L + N V + S+G +DK + + V K + V ++ S+K+ P
Sbjct: 220 WEIDALLEDKNKNEVLASHSKGRFWDKDEADTVMEKVNKARKAVVSQIRKSSKTDKPPTP 279
Query: 296 LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESS 355
NT EL+ ASS +G +AM+IAE LYT GY+SYPRT+ T YP + DL A + + SS
Sbjct: 280 FNTTELISAASS-IGFTASNAMRIAESLYTNGYISYPRTDNTVYPASLDLRAQI-EIFSS 337
Query: 356 PDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGT 414
+ ++ E+L P +GK + DHPPI P A +++L+ W+LY+ +VR F T
Sbjct: 338 GIFKEYANELLKKKELIPTRGKKESTDHPPIYPASYAKKSELNEQEWKLYELVVRRFFAT 397
Query: 415 LCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQS 474
+ KF + +E F L++ G+ ++A ++ +P + D++ ++
Sbjct: 398 FAEPARWETMRIKFEINEEEFKSSGARLVNAGWRWYYPYNAPEDRLLPQMEEKDILSVEK 457
Query: 475 VKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSL 534
+ MV+++T PP + LI LME+ G+GT A+ I+ + R YV G L+PT
Sbjct: 458 IDMVDKETKPPGRYGQGRLIRLMEELGLGTKATRHETISKLYSRTYV---HGSPLIPTKT 514
Query: 535 GIVLVHGYQKIDRELVEPTMRS 556
++ +K + +P M S
Sbjct: 515 AYAVIETLEKYAPTITKPDMTS 536
>gi|67624339|ref|XP_668452.1| DNA topoisomerase III [Cryptosporidium hominis TU502]
gi|54659676|gb|EAL38243.1| DNA topoisomerase III [Cryptosporidium hominis]
Length = 498
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 215/396 (54%), Gaps = 17/396 (4%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELF--SCPTEKREATPKLKLPAFLANEAKDCEFL 110
+TSV GH+ L F SKY++W V+P+ L S P + + L +K +L
Sbjct: 100 VTSVRGHLKQLGFASKYSDWGSVNPVVLLDLSTPVISSILPDCMGIADNLTYFSKISSYL 159
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
+LWLDCD+EGENI FEV+ +N N +RA FSAIT +I AM L PN
Sbjct: 160 ILWLDCDREGENIAFEVLSIC---LNSNKNLITFRAHFSAITKFEINNAMKKLSFPNRAL 216
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
+ +V+AR+E+DLR+G +FTR+ T + + + +L SYG CQ PTLGF V R+ KI
Sbjct: 217 SDAVEARKEIDLRVGSSFTRFLTLRYSRLFPIPERTL-SYGTCQFPTLGFVVSRYKKIIN 275
Query: 231 FKPEPYWLLDLTL--------NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVD 282
F+ E W + L + N V W RG +FD + ++ + + V +
Sbjct: 276 FREEDEWTITLEVKMKIYEGNNKEMSNVIFEWERGKLFDNLFTFIIYETCIENSNARVKE 335
Query: 283 VQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPEN 342
+ ++ K KP LNTVE+ ++AS L + P + IAE LY +GY+SYPRTET + ++
Sbjct: 336 IVNNRILKRKPLPLNTVEMTKIASDKLKISPIKCINIAENLYRKGYISYPRTETNSFSDS 395
Query: 343 FDLVAVLRQQESSPDWGDHVREVLS-NGISKPRKG-KDVGDHPPITPTKLATRTQL-DGD 399
D+ +++QE S +G E+L N S PRKG KD G HPPI P K + Q +
Sbjct: 396 IDISKYIKEQEKSSIFGSFANELLYLNSFSVPRKGCKDDGSHPPIHPVKCLNKEQASSNE 455
Query: 400 AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMF 435
W LY+ I RHF+ + D V + + K ++ E F
Sbjct: 456 EWLLYELITRHFLSSCSEDAVIMETIVKIDISGETF 491
>gi|403222791|dbj|BAM40922.1| DNA topoisomerase III [Theileria orientalis strain Shintoku]
Length = 619
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 166/563 (29%), Positives = 274/563 (48%), Gaps = 75/563 (13%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
RMN S ++ + TSV GH+MGLDF Y NW + +LF+ +
Sbjct: 34 RMNPVFSFQYYIESRMCKMYF---TSVRGHLMGLDFEPNYRNWSRTAIEDLFT----GKF 86
Query: 90 ATPKLKLPAFLAN---EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRA 146
T F+ E E++ L +T+ R+
Sbjct: 87 HTSTHSADDFIGKQRLEGNRKEYIAL----------------------------RTLSRS 118
Query: 147 RFSAITDKDIKAAMWNLVKPN--------IFEARSVDARQELDLRIG-CAFTRYQ----- 192
+ + DI+ A+ NL +PN E +V+ RQE+DLRIG CA +
Sbjct: 119 KCAG---SDIEHALNNLKEPNRNLANVSIKSEYGAVETRQEIDLRIGKCAQKTVELGSSI 175
Query: 193 TKFFQGKYGDL---DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVA 249
T+F KY + A ++SYG CQ PTLGF VER+ +I F+ EPYW +++ + +
Sbjct: 176 TRFLTLKYKNAIRTQAKILSYGTCQLPTLGFVVERYLQIENFQREPYWTINVNVTHESIP 235
Query: 250 VSVTWSRGHIFDK-----------STCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
V+ WSR +FD+ + ++ +E + V ++ K K P L+T
Sbjct: 236 VTFLWSRKKLFDEYNRALITMCRLAVLTLYEVCLENPRGVIRKIIKKEVK-KHPPLPLDT 294
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
+E+ + S L + H MQ+AE LY +GY+SYPRTET +P + ++ ++R + ++
Sbjct: 295 IEMNKDVSKFLRISSHKCMQLAEALYNKGYISYPRTETNCFPSSINVKTIIRMLSTVQEF 354
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDA-WRLYDYIVRHFIGTLC 416
+ +L+ G +P KG K+ HPPI P K +R + D + W+LY+YI R F+
Sbjct: 355 SGYANTLLNGGFREPIKGRKNDEAHPPIHPVKCLSRYEADSEEHWQLYEYIARRFLACCS 414
Query: 417 GDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVK 476
+ Q + V+ EMF ++ + + + T+S + + IP+F I ++
Sbjct: 415 KASIGHQSIVILDVSGEMFNLKGLIIHERNWLNIYTYSTWEGKLIPNFHENQQIMPDAIL 474
Query: 477 MVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGI 536
+ + +TTPP L+E+ LI LM ++GIGTDA++ HI I R+Y R +PT+LG
Sbjct: 475 LKDGRTTPPSLLSEANLIDLMNRNGIGTDATMHEHIQKIQDRHYCVKDQNLRFIPTNLGK 534
Query: 537 VLVHGYQKIDR---ELVEPTMRS 556
+ HG+++ + +L +P +R+
Sbjct: 535 AIYHGFKEYNYRNIDLTKPILRA 557
>gi|108804786|ref|YP_644723.1| DNA topoisomerase I [Rubrobacter xylanophilus DSM 9941]
gi|108766029|gb|ABG04911.1| DNA topoisomerase I [Rubrobacter xylanophilus DSM 9941]
Length = 702
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 155/499 (31%), Positives = 251/499 (50%), Gaps = 16/499 (3%)
Query: 58 GHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCD 117
GH++ ++ +Y+NW KVDP EL K + + + A + + AK + +++ D D
Sbjct: 51 GHVLNPEYPEEYSNWQKVDPRELIDARILK--SVSEKGVAAAVRSLAKKADRVIIATDFD 108
Query: 118 KEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDAR 177
+EGE I E + ++ + N V RARFSA+T ++ A NLV+ + A + +AR
Sbjct: 109 REGELIGVEAL-SLAFEANPALMDHVERARFSALTKGEVTRAFENLVEVSRELADAGEAR 167
Query: 178 QELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYW 237
Q++DL G TR+ ++ + +YG ++ +S G Q+PTL ER + R F PEPYW
Sbjct: 168 QDIDLIWGATLTRWVSRAVK-RYG---SAFLSVGRVQSPTLVLIAERELERRAFVPEPYW 223
Query: 238 LLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV-DVQSSTKSKTKPQAL 296
++ L G +RG +++ +A+E VV +V+ ++ P
Sbjct: 224 EVEARLQNGGGPFVARHARGRFKEEAEAR---RALENLSETAVVTEVRQREATRPAPAPF 280
Query: 297 NTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSP 356
NT + A++ +G+ P A +IAE LYT+GY+SYPRT+ T YPE+ DL VL
Sbjct: 281 NTTAFL-TAAANIGVSPSRAARIAEDLYTEGYISYPRTDNTVYPESLDLREVLGFLAEVE 339
Query: 357 DWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTL 415
GD+ +L G P +G+ DHPPI PT A+R +L D W++Y +VR F+ TL
Sbjct: 340 GVGDYAGRLLGAGRLTPTRGRRQTTDHPPIYPTGRASRAELREDQWKIYQLVVRRFLATL 399
Query: 416 CGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSV 475
G + +F E + G+ V + ++E +P GD + +
Sbjct: 400 SGPAKTLRTTLRFESGGEPLVAGGTVVTEEGWLAVYHYGRRRDEELPRLSEGDEVRVAEA 459
Query: 476 KMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLG 535
+++ ++T PP + LI LME G+GT A+ P I N+ R Y+ G +VPT G
Sbjct: 460 ELLAKETQPPGRYGQGRLIRLMEDLGLGTKATRPGIIQNLYDRGYI---HGDPIVPTETG 516
Query: 536 IVLVHGYQKIDRELVEPTM 554
+ + + E+ M
Sbjct: 517 MAVAKALKDFASEIASHEM 535
>gi|355572493|ref|ZP_09043605.1| DNA topoisomerase [Methanolinea tarda NOBI-1]
gi|354824533|gb|EHF08778.1| DNA topoisomerase [Methanolinea tarda NOBI-1]
Length = 946
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 178/518 (34%), Positives = 255/518 (49%), Gaps = 38/518 (7%)
Query: 51 FKMTSVCG---HIMGLDFTSKYNNW--DKVDPLELFSCPTEKREATPKLKLPAFLANEAK 105
F T+V G H++ +DF Y+NW + P L PT K + K+ A L AK
Sbjct: 38 FNGTTVVGLRGHVVEVDFVEGYSNWRSESKTPRSLIDAPTIK--VPTEKKIVALLQKLAK 95
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
+ + D D EGE I E E VR +N V R RFSAIT +I+ A + +
Sbjct: 96 KATRVTIATDFDTEGELIGKEAYELVR---AVNPSVPVDRVRFSAITPGEIRHAFASPTE 152
Query: 166 PNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERH 225
+ A + +ARQ +DL G + TR+ + K G A+++S G Q+PTL V+R
Sbjct: 153 IDFALASAGEARQVIDLMWGASLTRFLS--LAAKRGG--ANILSVGRVQSPTLAMIVDRE 208
Query: 226 DKIRTFKPEPYWLLDLTLNLNGVAVSV--TWSRGHIFDKSTCNVFFKAVEKEKHV---TV 280
+I FKPE YW L L G + T SR H FD++ KE+ V V
Sbjct: 209 REIEAFKPEKYWQLRLLTGKGGEDIEARHTTSRFHTFDEALAA-------KERSVPPLVV 261
Query: 281 VDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP 340
V TK P +T + VA++ LG +AM+IAE LY GY+SYPRT+ T YP
Sbjct: 262 TSVVEGTKVDRAPSPFDTTSFI-VAAARLGYSAANAMRIAEELYMNGYISYPRTDNTVYP 320
Query: 341 ENFDLVAVL---RQQESSPDWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKLATRTQL 396
DL +VL R PD V V++N P +G+ V DHPPI PT A R +L
Sbjct: 321 ATLDLGSVLSAIRPTVFRPD----VEWVMANQRPVPTRGQKVSTDHPPIHPTGPAGREEL 376
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM 456
+ W+LY+ +VR F+ TL D + S E +T+ +L PG+ V +SA
Sbjct: 377 GEERWKLYELVVRRFLATLSPDARWRTMKVMLSAGGEPYTVTGGQILEPGWRKVYPYSAA 436
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
+P K G+++P++ V+M E++T PP T+S LI ME+ G+GT ++ I +
Sbjct: 437 TEYVLPGLKEGEVLPLREVRMEEKETQPPPRFTQSRLIQRMEELGLGTKSTRHEVIQKLV 496
Query: 517 QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
R YV G L PT +G ++ + + P M
Sbjct: 497 SRKYV---EGNPLRPTLVGRAVIESLENHADTITRPEM 531
>gi|238578791|ref|XP_002388836.1| hypothetical protein MPER_12103 [Moniliophthora perniciosa FA553]
gi|215450488|gb|EEB89766.1| hypothetical protein MPER_12103 [Moniliophthora perniciosa FA553]
Length = 421
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 138/370 (37%), Positives = 195/370 (52%), Gaps = 8/370 (2%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
F +T+V GH+ LDFT + W DP +LF PT R + + NEAK L
Sbjct: 49 FTVTAVAGHLTELDFTDTHRKWGSCDPFDLFDAPTVSRVKDDNKGMERNIFNEAKQAATL 108
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
++W DCD+EGE+I E+ + + N V RARF+AI + I A + V +I
Sbjct: 109 MIWTDCDREGEHIGSEIAKVAKR---ANRNIIVKRARFNAIVAQQIHHAAQHPVDLDIRL 165
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
+V++R +DL+IG AFTRYQT + + G L L SYGPCQ P LGF V R ++
Sbjct: 166 VDAVESRIVIDLKIGSAFTRYQTTNIKNRLG-LSDGLYSYGPCQFPCLGFVVARFKDVQN 224
Query: 231 FKPEPYWLLDLTLN-LNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKS 289
F+P+P+W + L + + W R IF + V ++ V V+ V+
Sbjct: 225 FRPDPFWYIYLAVTTADDQETPFNWKRDRIFSEDEALVIYEHVMTNPLARVIKVEKKETK 284
Query: 290 KTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL 349
K KP L TVE+ + S L + P + IAE+LY QG++SYPRTET Q+ FD +++
Sbjct: 285 KWKPLPLTTVEMQKAGSRLLKLAPKKILDIAEKLYQQGFLSYPRTETDQFDSQFDFQSLI 344
Query: 350 RQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIV 408
+Q + P WG + G S PRKGK+ HPPI PT A L G+ R+Y+YI
Sbjct: 345 EKQRADPSWGAFATSLQEGGFSAPRKGKNNDKAHPPIHPTAYA--GNLHGEEKRVYEYIT 402
Query: 409 RHFIGTLCGD 418
R F+ D
Sbjct: 403 RRFLACCSTD 412
>gi|325089089|gb|EGC42399.1| DNA topoisomerase III [Ajellomyces capsulatus H88]
Length = 450
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 137/385 (35%), Positives = 207/385 (53%), Gaps = 6/385 (1%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ L+F S+Y W+ P LF P A L + + A++ + L +
Sbjct: 58 MTSVIGHLTSLEFDSQYRGWNSCPPGRLFDAPVVDSVAKDNLTIAENIRTLARNSKALFI 117
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE+I EV R+Q ++P+ + RARFS I A N ++ + +A
Sbjct: 118 WTDCDREGEHIGTEV----RYQARKSNPRIEIKRARFSNTERAHILQAATNPIELDDSQA 173
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V AR ELDLRIG AFTR QT + G L+ +ISYG CQ PTLGF V+R+ +++ F
Sbjct: 174 NAVAARIELDLRIGAAFTRLQTLQLKSLGGVLEDRVISYGSCQFPTLGFVVDRYFRVKNF 233
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
KPE +W + ++ +G V+ W R H++D++ + F+ K V V K
Sbjct: 234 KPEKFWTIKVSHVRDGKTVNFLWRRVHLYDRAAVVILFERCLTSKTAKVTKVHKKPTRKW 293
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
+P L TV+L + S L M M+IAE LYT+G++SYPRTET Q+ + DL ++ +
Sbjct: 294 RPLPLTTVDLQMMGSRYLRMDSQKVMKIAETLYTKGFISYPRTETDQFDKGIDLKKLIEK 353
Query: 352 QESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRH 410
Q S +WG + + +++ ++PR G + HPPI P A T L D +Y+++ R
Sbjct: 354 QIPSENWGQYAQRLINGSFTQPRAGHHNDKAHPPIHPVIFAAPTVLSNDERLVYEFVTRR 413
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMF 435
F+ D + DE+F
Sbjct: 414 FLACCSEDAKGESTEVEIKYGDEIF 438
>gi|440494418|gb|ELQ76798.1| DNA topoisomerase III alpha [Trachipleistophora hominis]
Length = 848
Score = 251 bits (642), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 172/551 (31%), Positives = 263/551 (47%), Gaps = 72/551 (13%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
TSV GH+ +FT W + DPL LF+ + L L + + + +V+
Sbjct: 48 FTSVLGHLYTQEFTDN-RKWTECDPLTLFTADITEYIKDEFKALKENLLHLSTGVDKVVI 106
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I E+ + + + WRARFSAIT +I AM N + ++ +
Sbjct: 107 WTDCDREGEYIALEIQKLLN--------RKCWRARFSAITRDEIVRAMENFQEIDMRQCD 158
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
SV AR ELDLRIG +FTR QT +++SYG CQ PTLGF VER + + F
Sbjct: 159 SVAARMELDLRIGASFTRLQTLNLAAH-----KNVVSYGSCQIPTLGFVVERALEHKKFV 213
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV-DVQSSTKSKT 291
E ++ L + + + +W+RG++FDK+ FF+ + E TVV V+ + ++
Sbjct: 214 AEKFFTLKICIVKDRHTNIFSWTRGNVFDKNCVLYFFRYLTDELAGTVVTGVEKKSVTRY 273
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
+P L TV++ ++ S M H MQ+AE LY +G +SYPRTET +P NF+ R
Sbjct: 274 RPLPLRTVDMQKILSR--SMPSHRIMQVAETLYQRGIISYPRTETDCFPRNFEYN---RI 328
Query: 352 QESSPDWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKLATRTQLDGDAWRLYDYIVRH 410
+ G H V + PR G++ H PI P L L D ++Y++I
Sbjct: 329 KTEILKAGRH--NVANTAFRGPRSGRNNDFAHLPIYP--LKNPANLTADEKKVYNFIADR 384
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLI 470
FI ++ D + + V + DE F ++ ++ GF + + I F+ G+
Sbjct: 385 FIASVSEDALLEEHVVHLRMKDEHFVLKGTKVVKHGFLKFYHHDRVGEKDISVFREGERF 444
Query: 471 PIQSVKMV----------------------------------------------ERKTTP 484
+ ++ + + T P
Sbjct: 445 ELSKIERICSLGEDEKDKPGNDRDDASEDVIIVNEAPGTLRDEHRMNKNCIFVNDGTTKP 504
Query: 485 PDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQK 544
P+YLTESELI+LM+++GIGTDA+I HI I R YV+ + + LVPT+LG L+ Y+
Sbjct: 505 PNYLTESELIALMDRNGIGTDATIHEHIKKILDRKYVSKRT-KYLVPTNLGYSLICCYKT 563
Query: 545 IDRELVEPTMR 555
+ L P R
Sbjct: 564 LGLNLERPHYR 574
>gi|47206372|emb|CAF93528.1| unnamed protein product [Tetraodon nigroviridis]
Length = 449
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 117/201 (58%), Positives = 147/201 (73%), Gaps = 1/201 (0%)
Query: 362 VREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVY 421
V+ +LS G+++PRKG D GDHPPITP + A+ +L D WRLY+YI RHFI T+ D Y
Sbjct: 1 VKALLSEGLNRPRKGTDAGDHPPITPMRSASEAELGCDGWRLYEYITRHFIATVSQDCKY 60
Query: 422 TQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVER 480
Q F++ E F+ K L+ GFT +M W + E++P + GD + +K+VE+
Sbjct: 61 LQTTIDFNIGTEAFSCSGKTLMSAGFTALMPWQNIPLEEAMPTCECGDTFTVDEIKLVEK 120
Query: 481 KTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVH 540
+T+PPDYLTE+ELI+LMEKHGIGTDASIPVHINNICQRNYVTV SGR+L PT+LGIVLVH
Sbjct: 121 QTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESGRKLKPTNLGIVLVH 180
Query: 541 GYQKIDRELVEPTMRSAYRVQ 561
GY KID ELV PT+RSA Q
Sbjct: 181 GYYKIDAELVLPTIRSAVEKQ 201
>gi|307354072|ref|YP_003895123.1| DNA topoisomerase I [Methanoplanus petrolearius DSM 11571]
gi|307157305|gb|ADN36685.1| DNA topoisomerase I [Methanoplanus petrolearius DSM 11571]
Length = 932
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 161/505 (31%), Positives = 257/505 (50%), Gaps = 29/505 (5%)
Query: 58 GHIMGLDFTSKYNNW--DKVDPLELFSC-----PTEKREATPKLKLPAFLANEAKDCEFL 110
GH++ +DF Y+NW + P L PTEKR + + AK + +
Sbjct: 48 GHVVEIDFEPGYSNWRSETHTPKSLIDAGTIKKPTEKR-------IVQLIKRLAKKADHV 100
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
++ D D+EGE I E E VR N + RARFSAIT ++I +A N + +
Sbjct: 101 IIATDFDREGELIGKEAYEIVRAA---NKTVPIKRARFSAITKQEITSAFANPAELDFNL 157
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
A + +ARQ +DL G + TR+ + K G +++S G Q+PTL V+R +I
Sbjct: 158 AEAGEARQVVDLIWGASLTRFIS--LAAKRGG--NNILSVGRVQSPTLAMIVDREKEIEA 213
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
F PEPYW++ L + G +DK + K ++ +TV+D++ T++
Sbjct: 214 FVPEPYWMISLDSETEEEKFEARHTEGKFWDKESAERSLKGTKEP--LTVIDIKEGTRAD 271
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
P +T + VA+S LG+ +AM+IAE LY GY+SYPRT+ T YP + DL +L
Sbjct: 272 HAPTPFDTTAYI-VAASRLGLSASNAMRIAEELYMNGYISYPRTDNTIYPSSLDLKGILT 330
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKLATRTQLDGDAWRLYDYIVR 409
+ + SP + V V +N P +GK DHPPI PT A++ +D AW++Y+ +VR
Sbjct: 331 ELKKSP-FKREVEWVSANMRPSPTRGKKSSTDHPPIHPTAAASKGDMDETAWKVYELVVR 389
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDL 469
F+ TL D + F E + + L + G+ V T+S K +++P G+
Sbjct: 390 RFLATLSPDARWKTLKYTFDAGGEPYASTGQRLDYEGYRIVYTYSQAKEQALPVLAAGEK 449
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRL 529
+PI +++ E++T PP ++S+LI +ME+ G+GT ++ I + R YV G L
Sbjct: 450 LPILDIRLEEKETLPPPRYSQSKLIQVMEELGLGTKSTRHDVIGKLFSRRYV---EGNPL 506
Query: 530 VPTSLGIVLVHGYQKIDRELVEPTM 554
PT +G + + + +P M
Sbjct: 507 KPTLVGRAVTESLEDHAGLITKPDM 531
>gi|296810820|ref|XP_002845748.1| DNA topoisomerase III [Arthroderma otae CBS 113480]
gi|238843136|gb|EEQ32798.1| DNA topoisomerase III [Arthroderma otae CBS 113480]
Length = 637
Score = 251 bits (641), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 168/561 (29%), Positives = 254/561 (45%), Gaps = 82/561 (14%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH++ +F +Y +W DP LF E + + + A+ + L +
Sbjct: 65 MTSVLGHLLSHEFEPRYKSWTSCDPSALFDARIEVFVGSNSEPIADNIKRHARRADVLFI 124
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DC + + A +Q + TV RA FS I I A + +A
Sbjct: 125 WTDCTE------IRSVAAQSNQALGRAGGTV-RAHFSNIERTHIIHAAHRPADLDEAQAN 177
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQG--KYGDLD--ASLISYGPCQTPTLGFCVERHDKI 228
SV +R ELDLR+G +FTR+ T + + G+L + LISYG CQ PTLGF VER+ ++
Sbjct: 178 SVASRIELDLRVGASFTRHLTLSLRPILQRGNLSEASQLISYGSCQFPTLGFIVERYWRV 237
Query: 229 RTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTK 288
R F PEP+W + L G V+ +W+R H+FD+ T + ++ ++ V V++
Sbjct: 238 RNFIPEPFWSIKLMHRKAGKRVNFSWARKHLFDRRTAVILYERCLTSQNAQVQKVKTRPT 297
Query: 289 SKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAV 348
SK KP L T+EL + S GM +Q+AE+LY +G++SYPRTET Q+ DL +
Sbjct: 298 SKWKPLPLTTLELQKCGSRFFGMDSQKVLQLAEKLYQKGWISYPRTETDQFDRGMDLRGL 357
Query: 349 LRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYI 407
+++Q W D+ ++ G S PR G + HPPI P T L + +++++
Sbjct: 358 VQKQAQGGRWADYATALVEGGFSWPRNGHNNDKAHPPIHPVNFVNPTTLSHEEQCIHEFV 417
Query: 408 VRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPG 467
VR F+ D ++ E F +L + A KN
Sbjct: 418 VRRFLACCSKDAQGSKTDISILHGPETFHASGLVILELSMSTFTIGGATKN--------- 468
Query: 468 DLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV------ 521
P S KT PP YLTE +L++LM +GIGTDA++ HI I R YV
Sbjct: 469 --FPRSS------KTLPPGYLTEPDLLALMNANGIGTDATMADHIVTIIDRQYVEARAQP 520
Query: 522 ---------------------------------------------TVTSGRRLVPTSLGI 536
+T R +PT+LG+
Sbjct: 521 RQARHGNDEEEPEELPAQARGRNGRRGRTAVAPRGGRNSGAGRGGAITGVREFIPTTLGV 580
Query: 537 VLVHGYQKIDRE--LVEPTMR 555
LV G++ + E L++P +R
Sbjct: 581 ALVEGHENMGFETNLMKPFLR 601
>gi|241594082|ref|XP_002404244.1| DNA topoisomerase III, putative [Ixodes scapularis]
gi|215502316|gb|EEC11810.1| DNA topoisomerase III, putative [Ixodes scapularis]
Length = 670
Score = 251 bits (640), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 176/538 (32%), Positives = 265/538 (49%), Gaps = 76/538 (14%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELF------SCPTEKREA 90
++E+ LF MTSV GH++ L+F S Y W P+ELF SC + E
Sbjct: 83 IYEFDYNLFNTNCKMVMTSVSGHLLTLEFVSDYRKWHSCSPVELFHAPVIMSCGDKNYE- 141
Query: 91 TPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSA 150
K+ L E + C+ LV+W DCD+EGENI F+++ R + V+RARFS
Sbjct: 142 ----KIKETLEKEIRYCDALVIWTDCDREGENIGFQIISVCR---KVKPRVRVYRARFSE 194
Query: 151 ITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKY-GDLDASLIS 209
IT + + A NL P+ +V+ R+ELDLRIG AFTR QT + ++ L L+S
Sbjct: 195 ITPQAVARACQNLADPDPKLNAAVEVRRELDLRIGAAFTRLQTLRLKREFPQQLHDRLVS 254
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFF 269
YG CQ PTLGF VER+ +I F PEP+W + LT + + +W R +FD C + +
Sbjct: 255 YGSCQFPTLGFVVERYRQILNFVPEPFWKIHLTHKKDDILADFSWKRHRLFDYQLCFLLY 314
Query: 270 KAVEKEKHVTVVDVQSSTKSKTKPQALNTV----ELMRVASSGLG------MGPHHAMQI 319
+ + + VV+++ KSK +PQ ++TV + +S L P + Q+
Sbjct: 315 QRCLQGEVSVVVEMKCKPKSKWRPQPMDTVVSGEAPFYLGASSLSNCWRVLRNPGTSDQL 374
Query: 320 AERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KD 378
T G + R T L + L S+P D R +L++G++ PR+G K
Sbjct: 375 PGSRTTCGMIRRLRHLTRNV-----LTSAL---SSAP--ADFARRLLADGLT-PRQGTKS 423
Query: 379 VGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
HPPI P K A + F+ T G +++ + D+
Sbjct: 424 DQAHPPIHPIKHAASLE---------------FVAT--GLIIFARNYLDVYPYDK----- 461
Query: 439 AKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
WSA + IP+++ + +K+V+ +T+PP L E++LI+LME
Sbjct: 462 --------------WSA---KEIPNYEMNETFVPDQLKLVDGETSPPPLLKEADLIALME 504
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
KHGIGTDA+ HI + R YV +T LVP LG+ LV GY + E+ +P +R+
Sbjct: 505 KHGIGTDATHADHIETVKNRLYVALTGDGYLVPGELGMGLVEGYDSMGLEMSKPRLRA 562
>gi|269986154|gb|EEZ92467.1| DNA topoisomerase type IA central domain protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4]
Length = 703
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 150/497 (30%), Positives = 245/497 (49%), Gaps = 25/497 (5%)
Query: 58 GHIMGLDFTSKYNNWD-----KVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
GHI + + + W+ K+ +L PT + A + AK + +++
Sbjct: 72 GHIKNVRYPETFRKWNEETLMKMIDAKLVYYPTAEDNI-------AVIKKFAKKADKVII 124
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
D D EGE+I FE ++ VR + N+ V+R+ FS++T K++ A NL KPN +
Sbjct: 125 ATDYDTEGESIGFEAIDVVREE---NTKSKVYRSVFSSLTTKELSEAFKNLQKPNKDLSD 181
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
S DAR+E+DL +G TR F L S +S G QTPTL V R + R FK
Sbjct: 182 SADARREIDLILGAVLTR----FISLAAERLGNSFLSIGRVQTPTLAIIVARDSERRAFK 237
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE YW T+ + G +FD+ T K + EK + V +
Sbjct: 238 PEKYWRFTATIQTKDAEFLAEYKDGKVFDEKTAEKLRK-TKNEKKAVIDKVDMKKRRMPP 296
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P+ NT +R A++ +G +AM+I + LY +GYVSYPRT++ YP DL +L +
Sbjct: 297 PKPFNTTAFLRSAAA-IGFSVPNAMRIVQGLYMKGYVSYPRTDSEAYPPTLDLKEILNEL 355
Query: 353 ESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFI 412
+S + V E+L ++ P KGK+ DHPPI P KL +L+ R++D I R F+
Sbjct: 356 RNSSSYSKAVSEILKKPLN-PTKGKEAKDHPPIHPVKLPNE-KLNPQEARIFDLISRRFL 413
Query: 413 GTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPI 472
TL + K + FT + +L PG+ V +S + +P+ K G+++ +
Sbjct: 414 ATLSDESEEEIISIKLDIKGNEFTAKGSRILVPGWRSVYIFSKYEENILPEIKEGEILKV 473
Query: 473 QSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPT 532
+ +E TTPP ++ ++ +ME +GT A+ P + + +R Y +++ R L+P+
Sbjct: 474 LKIDEIEDFTTPPGNYSQGAILKIMEDLNLGTKATRPEILKKLMERRY--ISASRTLIPS 531
Query: 533 SLGIVLVHGYQKIDREL 549
+ ++ QK+ E+
Sbjct: 532 EVAFAVIENMQKVSNEI 548
>gi|452211571|ref|YP_007491685.1| DNA topoisomerase I [Methanosarcina mazei Tuc01]
gi|452101473|gb|AGF98413.1| DNA topoisomerase I [Methanosarcina mazei Tuc01]
Length = 752
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 159/505 (31%), Positives = 255/505 (50%), Gaps = 20/505 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP-KLKLPAFLANEAKDCEFLV 111
+ + GHI+G+DF +YNNW KVD +L TP K+ L + K+ + +
Sbjct: 50 VVGLSGHIVGIDFPKEYNNWQKVDARDLIDAEIT---TTPINRKIVTALKSLGKEADRVT 106
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
+ D D+EGE I E + ++ Q+N P R R+SAIT K I+AA N + A
Sbjct: 107 IATDYDREGELIGVEALNIIK-QVNPKIP--FDRVRYSAITPKAIEAAFSNPTNVDFNLA 163
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+ +RQ +DL G A TRY G+ G + +S G Q+PTL V+R + F
Sbjct: 164 DAGHSRQVIDLVWGAALTRY-ISLAAGRLGKM---FLSVGRVQSPTLSLIVDREKERNIF 219
Query: 232 KPEPYWLLDLTL-NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
P PYW + + L + G S S DK + F+ + K+ + +++ TK+
Sbjct: 220 VPTPYWEIHVELEDAAGETFSAQHSTRRFLDKEEASKVFRKLGKKAELK--EIEKGTKTD 277
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
P NT + A+S +G+ P +AM+IAE LYT GY+SYPRT+ T YP+ DL A +
Sbjct: 278 QPPTPFNTTGFISAANS-IGLSPSNAMRIAESLYTNGYISYPRTDNTVYPDTLDLRAQIE 336
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVR 409
+ P + ++ +L P +GK + DHPPI P LA + L D W++Y+ +VR
Sbjct: 337 IFKEGP-FKEYANTLLEKPELVPTRGKKETTDHPPIFPASLAKESDLKEDEWKVYELVVR 395
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDL 469
F T G ++ K + E F LL PG+ ++A ++ +P+ K GDL
Sbjct: 396 RFFATFAGPSIWETMRLKLDIEGEEFRANGARLLEPGWRWYYPYNAPEDRLLPELKEGDL 455
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRL 529
+ + +M++++T PP + LI++ME+ G+GT A+ I+ + R Y+ G +
Sbjct: 456 LKVIKKEMLDKETQPPGRYGQGRLINIMEELGLGTKATRHEIISKLYSRAYI---HGNPV 512
Query: 530 VPTSLGIVLVHGYQKIDRELVEPTM 554
PT+ ++ +K + +P M
Sbjct: 513 QPTNTSFSVMDTLEKYSPTITKPDM 537
>gi|294495850|ref|YP_003542343.1| DNA topoisomerase I [Methanohalophilus mahii DSM 5219]
gi|292666849|gb|ADE36698.1| DNA topoisomerase I [Methanohalophilus mahii DSM 5219]
Length = 737
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 173/567 (30%), Positives = 272/567 (47%), Gaps = 43/567 (7%)
Query: 1 MHLRVKKLVPASEIKLARPSLISLLTPLQ----RMNGACSVHEWVGPLFGDLVLFKMTSV 56
MHL + +E ++A + S+L+P + R++G S FG+ + +
Sbjct: 1 MHLII------AEKQIAARRIASILSPKKPQKKRISGIDSYE------FGNDEKTIVIGL 48
Query: 57 CGHIMGLDFTSKYNNWDKVDPLELFSC-----PTEKREATPKLKLPAFLANEAKDCEFLV 111
GHI+ LDF YNNW KV+ EL PT K+ + L K +
Sbjct: 49 SGHIVQLDFPPAYNNWQKVEAKELVDAELIITPTH-------AKIVSALKKLGKKATKVT 101
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
+ D D+EGE I E + V+ +N RA +SAIT IK A N K + A
Sbjct: 102 IATDYDREGELIGVEALNIVK---GVNESIEYERAVYSAITPAAIKEAFENTTKIDFNLA 158
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+ +RQ +DL G + TR F L +S G Q+PTL V+R + F
Sbjct: 159 DAGHSRQVIDLVWGASLTR----FISLASRRLGKQFLSVGRVQSPTLALIVDREKEREAF 214
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
P PYW + + L+ NG + ++K N F+ + E V+ +++STK
Sbjct: 215 VPTPYWEIYVDLSKNGEIFKIRHKNTRFWEKEEANRVFRLIGNEALVS--SLETSTKEDK 272
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
P NT E +R A+S +G P +AM+IAE LYT GY+SYPRT+ T YP DL + +
Sbjct: 273 PPTPFNTTEFIRAANS-IGFTPANAMRIAESLYTNGYISYPRTDNTVYPSTIDLREQI-E 330
Query: 352 QESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRH 410
S + ++ +++L+ KP KGK + DHPPI P +A + QL D W+LY+ +VR
Sbjct: 331 MFSKGHFSEYAKKLLAKKELKPTKGKKETTDHPPIFPASVAKKAQLKEDEWKLYELVVRR 390
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLI 470
F T + + +F + +E F L+ PG+ ++A ++ IP + G+++
Sbjct: 391 FFATFAENAEWETMKVRFDINEEEFRANGSRLVKPGWRWYYPYNAPEDRLIPALEEGEIL 450
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLV 530
P+ ++++++T PP + LI +ME +GT A+ I+ + R YV G L
Sbjct: 451 PVNDKEILDKETNPPGRYGQGRLIKMMEDMALGTKATRHEIISKLYSRAYV---HGNPLQ 507
Query: 531 PTSLGIVLVHGYQKIDRELVEPTMRSA 557
PT +V G + + P M S+
Sbjct: 508 PTQTAYAVVEGLENYAPTITRPDMTSS 534
>gi|21229178|ref|NP_635100.1| DNA topoisomerase I [Methanosarcina mazei Go1]
gi|20907743|gb|AAM32772.1| DNA topoisomerase I [Methanosarcina mazei Go1]
Length = 752
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 156/505 (30%), Positives = 252/505 (49%), Gaps = 20/505 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP-KLKLPAFLANEAKDCEFLV 111
+ + GHI+G+DF +YNNW KVD +L TP K+ L + K+ + +
Sbjct: 50 VVGLSGHIVGIDFPKEYNNWQKVDARDLIDAEIT---TTPINRKIVTALKSLGKEADRVT 106
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
+ D D+EGE I E + ++ +N R R+SAIT K I+AA N + A
Sbjct: 107 IATDYDREGELIGVEALNIIKK---VNPKIPFDRVRYSAITPKAIEAAFSNPTNVDFNLA 163
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+ +RQ +DL G A TRY G+ G + +S G Q+PTL V+R + F
Sbjct: 164 DAGHSRQVIDLVWGAALTRY-ISLAAGRLGKM---FLSVGRVQSPTLSLIVDREKERNIF 219
Query: 232 KPEPYWLLDLTL-NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
P PYW + + L + G S S DK + F+ + K+ + +++ TK+
Sbjct: 220 VPTPYWEIHVELEDAAGETFSAQHSTRRFLDKEEASKVFRKLGKKAELK--EIEKGTKTD 277
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
P NT + A+S +G+ P +AM+IAE LYT GY+SYPRT+ T YP+ DL A +
Sbjct: 278 QPPTPFNTTGFISAANS-IGLSPANAMRIAESLYTNGYISYPRTDNTVYPDTLDLKAQIE 336
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVR 409
+ P + ++ +L P +GK + DHPPI P LA + L D W++Y+ +VR
Sbjct: 337 IFKEGP-FKEYANTLLEKPELVPTRGKKETTDHPPIFPASLAKESDLKEDEWKVYELVVR 395
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDL 469
F T G ++ K + E F LL PG+ ++A ++ +P+ K DL
Sbjct: 396 RFFATFAGPSIWETMRLKLDIEGEEFRANGARLLEPGWRWYYPYNAPEDRLLPELKESDL 455
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRL 529
+ + +M++++T PP + LI++ME+ G+GT A+ I+ + R Y+ G +
Sbjct: 456 LKVIKKEMLDKETQPPGRYGQGRLINIMEELGLGTKATRHEIISKLYSRAYI---HGNPV 512
Query: 530 VPTSLGIVLVHGYQKIDRELVEPTM 554
PT+ ++ +K + +P M
Sbjct: 513 QPTNTSFAVMDTLEKYSPTITKPDM 537
>gi|167524627|ref|XP_001746649.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774919|gb|EDQ88545.1| predicted protein [Monosiga brevicollis MX1]
Length = 1562
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 172/539 (31%), Positives = 253/539 (46%), Gaps = 63/539 (11%)
Query: 52 KMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCP-----TEKREATPKLKLPAFLANEAKD 106
K+TSV GH+M +F Y W P ELF P ++ T + L A+
Sbjct: 54 KLTSVLGHLMTWEFKDAYRGWHSCAPQELFDAPLQHVVNDRPGETNCATIKTLLQKYART 113
Query: 107 CEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKP 166
C++L++ D D+EGENI FE++E R +N R +FSA+T +I + LV P
Sbjct: 114 CDWLIIATDNDREGENIGFEIIEVCRR---VNRNLDCKRMKFSAVTPGEINGCLTRLVPP 170
Query: 167 NIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHD 226
+ +++ ARQELDLRIG FTR+QT Q Y R
Sbjct: 171 DQRASQACVARQELDLRIGAIFTRFQTLRLQALY---------------------PARFG 209
Query: 227 KIRTFKPEPYWL-LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS 285
+ +P Y L + + + V +W RG +FD+ V E E VVDVQS
Sbjct: 210 REARKQPISYVLHQEQSEAGDDYNVEFSWHRGRVFDEQVAGVLADRCEPEA-ARVVDVQS 268
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDL 345
+SK +P L T E+ ++AS + P ++ AE+LY QG +SYPRTET ++ + DL
Sbjct: 269 RQRSKYRPVGLTTTEMQKIASRRFKIAPADSLSAAEKLYQQGILSYPRTETNKFDSSIDL 328
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLY 404
++ +G +L PR G + HPPI PTK + L G ++Y
Sbjct: 329 RPMVEVFAQHSLYGAFASSLLEGQGPTPRNGNKSDEAHPPIHPTK--SVNNLSGREQQIY 386
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA------KYL--LHP--------GFT 448
D + RHF+ D + DE+FT + YL HP GF+
Sbjct: 387 DLVTRHFLACCSRDARGEETTVTVHKGDEVFTAKGLVIRDRGYLEIYHPYDNWGGKVGFS 446
Query: 449 ---------GVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
G M + +P + G +P +V +T+ P LTE++L+SLM +
Sbjct: 447 KKIWPGQSFGYMRQKEGDDGMLPPYTVGQELPANCEVLVG-ETSAPALLTEADLLSLMAR 505
Query: 500 HGIGTDASIPVHINNICQRNYVTVT-SGRRLVPTSLGIVLVHGYQKIDREL--VEPTMR 555
+ IGTDA++ HI NI +R YV +G+ LVPT+LGI LV+ Y + E+ P +R
Sbjct: 506 YEIGTDATMAEHIKNILEREYVCKQEAGQSLVPTTLGIALVNAYDDMSFEISVARPDLR 564
>gi|126178720|ref|YP_001046685.1| DNA topoisomerase [Methanoculleus marisnigri JR1]
gi|125861514|gb|ABN56703.1| DNA topoisomerase I [Methanoculleus marisnigri JR1]
Length = 931
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 164/505 (32%), Positives = 251/505 (49%), Gaps = 29/505 (5%)
Query: 58 GHIMGLDFTSKYNNW--DKVDPLELFSC-----PTEKREATPKLKLPAFLANEAKDCEFL 110
GH++ +DF Y NW + P L PTEK K+ + ++ + +
Sbjct: 48 GHVVEVDFEPGYTNWRSETHTPRTLIDAGIVKKPTEK-------KIVNLIQKLSRKADLV 100
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
+ D D EGE I E E VR +N + RARFSAIT +I+ A NL +
Sbjct: 101 TIATDYDTEGELIGKEAYELVR---AVNPNVRINRARFSAITPAEIRTAFENLTDLDFDL 157
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
A + +ARQ +DL G + TR+ + + G + ++S G Q+PTL VER +I +
Sbjct: 158 AAAGEARQTVDLMWGASLTRFIS--LAARRGGTN--ILSVGRVQSPTLAMIVEREREIES 213
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
F P+ YW+L L +GV + + G D + +A KE V V DV+ K+
Sbjct: 214 FVPQTYWMLSLATEKDGVTIEARHTAGRFTDHEAA-LAAEAGTKEPLV-VTDVKEGQKND 271
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
P +T + VA+S LG+ +AM++AE LY GY+SYPRT+ T YP++ +L A+L
Sbjct: 272 RAPTPFDTTTFI-VAASRLGLSAANAMRLAEDLYMNGYISYPRTDNTVYPKSLNLNAILN 330
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVR 409
+ + V V N P +GK + DHPPI PT ATR L D W++Y+ +VR
Sbjct: 331 TLKGGV-FDKDVAWVQQNRRPVPTRGKKESTDHPPIHPTGSATREALGQDRWKVYELVVR 389
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDL 469
F+ TL D + F + E + LL+ G+ + +S K +P PG+
Sbjct: 390 RFLATLSPDANWATTRCTFDASGEAYKATGGRLLYAGWRRIYPYSEAKENILPVLAPGER 449
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRL 529
+PI++V + E++T PP ++S LI +ME+ G+GT ++ I + R YV G L
Sbjct: 450 LPIKNVNLEEKETQPPARYSQSRLIQVMEELGLGTKSTRHEVIGKLVSRRYV---EGNPL 506
Query: 530 VPTSLGIVLVHGYQKIDRELVEPTM 554
PT +G ++ + EP M
Sbjct: 507 RPTLVGRAVIDALDNHAETITEPEM 531
>gi|432331507|ref|YP_007249650.1| topoisomerase IA [Methanoregula formicicum SMSP]
gi|432138216|gb|AGB03143.1| topoisomerase IA [Methanoregula formicicum SMSP]
Length = 942
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 170/535 (31%), Positives = 266/535 (49%), Gaps = 40/535 (7%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNW--DKVDPLELFSC--- 83
Q+ G + H FGD + + GH++ +DF Y NW + P L
Sbjct: 28 QKDAGVSTYH------FGDTITVGLR---GHVVEIDFEPGYQNWRSETATPRSLIDAKTI 78
Query: 84 --PTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPK 141
PTEK K+ + L AK + + + D D EGE I E E VR N
Sbjct: 79 KVPTEK-------KIVSLLQKLAKKADRVTIATDFDTEGELIGKEAYELVR---AANKKV 128
Query: 142 TVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG 201
T+ RARFSAIT++++K A + + A + +ARQ +DL G + TR+ + + G
Sbjct: 129 TIDRARFSAITEQELKHAFSTTTELDFALAAAGEARQSIDLMWGASLTRFIS--LAARRG 186
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFD 261
+++S G QTPTL V+R +I F PE YW L L G + + G +
Sbjct: 187 G--QNILSVGRVQTPTLSMIVDREKEIVAFVPEKYWQLALDFEKRGEVIEARHTNGRFHE 244
Query: 262 KSTCNVFFKAVEKEKHVTVV-DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
K+ +A ++ + VV +V++ TK P +T + VA++ LG+ +AM+IA
Sbjct: 245 KAAAE---QARDRTQSPLVVKEVRTGTKQDRAPSPFDTTTYI-VAAARLGLSAANAMRIA 300
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG 380
E LY G++SYPRT+ T YP + D+ +L ++SP + V V+++ P +GK
Sbjct: 301 EDLYMNGFISYPRTDNTVYPPSLDISGILNTLKTSP-FKKDVEWVIAHRRPVPTRGKKSS 359
Query: 381 -DHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA 439
DHPPI PT ATR L DA+R+Y+ ++R F+ TL D + F E +T
Sbjct: 360 TDHPPIHPTGAATREMLGDDAFRVYELVLRRFLATLAPDAQWKTLKILFDANGEEYTTTG 419
Query: 440 KYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
L+ G+ V +S + +P+F G+ +PI+ V + E++T PP T+S+LI ME+
Sbjct: 420 GQLMEQGWHAVYPFSEARETLLPEFATGEKLPIRKVTLDEKETLPPARYTQSKLIQRMEE 479
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
G+GT ++ I + R YV G L PT +G V+ ++ + +P M
Sbjct: 480 LGLGTKSTRHEVIAKLVSRKYV---EGAPLRPTLVGRVVTESLEQHADIITKPDM 531
>gi|298674647|ref|YP_003726397.1| DNA topoisomerase I [Methanohalobium evestigatum Z-7303]
gi|298287635|gb|ADI73601.1| DNA topoisomerase I [Methanohalobium evestigatum Z-7303]
Length = 742
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 151/473 (31%), Positives = 244/473 (51%), Gaps = 23/473 (4%)
Query: 56 VCGHIMGLDFTSKYNNWDKVDP-----LELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
+ GHI+ LDF +YNNW KV+ EL + PT+ +K+ A L K +
Sbjct: 49 LSGHIVELDFPKEYNNWQKVNAEDLIDAELITKPTQ-------VKIVAALKKLGKKASKV 101
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
+ D D EGE I E ++ ++ +N R ++SAIT+K+IK A N V +
Sbjct: 102 TIATDYDGEGELIGVEALDIIKK---VNQDIQFDRVKYSAITEKEIKNAFSNPVNVDFNL 158
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
A + +RQ +DL G + TRY G+ G + +S G Q+PTL V+R +
Sbjct: 159 ADAGHSRQVIDLVWGASLTRY-ISLSAGRLGKM---FLSVGRVQSPTLALIVDREKEREA 214
Query: 231 FKPEPYWLLDLTL-NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKS 289
F P+PYW + TL N NG +DK+ N ++ K V V+ STK
Sbjct: 215 FVPDPYWEVYATLANSNGEEFVTQHKTQRFWDKNQVNSVVDKLKDCKTAEVTSVEKSTKQ 274
Query: 290 KTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL 349
P NT E + A+S +G +AM+IAE LYT GY+SYPRT+ T YP++ DL ++
Sbjct: 275 DKPPSPFNTTEFISAANS-VGFTASNAMRIAETLYTNGYISYPRTDNTVYPDSLDLRNLI 333
Query: 350 RQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIV 408
+S + + + +L+ P +GK + DHPPI PT A +++L+ D W++Y+ +V
Sbjct: 334 AMFKSG-QFKQYAQYLLNKSNLVPTRGKKETQDHPPIYPTSAAKKSELNEDEWKIYEMVV 392
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGD 468
R F T + KF + E F + L+ PG+ +++ +++ +P K G+
Sbjct: 393 RRFFATFADPAKWETMKVKFDIGSEEFRAKGARLISPGWRWFYPYNSPEDKILPPLKKGE 452
Query: 469 LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
++ ++S K+ +++T PP + L+ +ME+ G+GT A+ I+ + R YV
Sbjct: 453 VLTVKSSKVADKETQPPGRYGQGRLVRIMEELGLGTKATRHEIISKLFSRAYV 505
>gi|343424117|emb|CCD17943.1| DNA topoisomerase III, putative [Trypanosoma vivax Y486]
Length = 726
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 159/455 (34%), Positives = 240/455 (52%), Gaps = 24/455 (5%)
Query: 114 LDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARS 173
+DCD+EGENICFEVM V+ +N V RA F+A+T +D+ A+ NL PN + +
Sbjct: 1 MDCDREGENICFEVMSVVQ---TVNRQIEVCRAHFNALTRRDLFTAVHNLKTPNKALSDA 57
Query: 174 VDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKP 233
V+ARQE+DL IG F+R+QT F+ + D+ ++S+GPCQ PTLGF V R + R F P
Sbjct: 58 VEARQEIDLGIGAVFSRFQTIKFRDMFRDM-PRVLSFGPCQIPTLGFVVRRSWEQRGFVP 116
Query: 234 EPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEK------EKHVTVVDVQSST 287
E Y+ TL L+ + RG ++D+ + +A+++ E VT V + +
Sbjct: 117 EEYF----TLALHHGQTVFSSCRGSMYDQIAATLVLEAMQESASEKPEAEVTEVVQRPNR 172
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP-ENFDLV 346
+ + P L TV L ++A++ L + M AE LY +GYVSYPRTET + + +L+
Sbjct: 173 RHPSVP--LATVVLQKLAATHLRISSEQCMMWAESLYQEGYVSYPRTETDSFSLTDNELL 230
Query: 347 AVLRQQESSPDWGDHVREVLS---NGISKP-RKGKDVGDHPPITPTKLATRTQLDGDAWR 402
+ Q + + G +V +L N +P R G D P I PTKL + +
Sbjct: 231 EIAGLQSGNSEVGQYVSAMLGDRQNRFRRPLRCGHDDKAFPQIYPTKLMPSS--NDPRMP 288
Query: 403 LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP 462
LY+ IVRHF+ + D V +E FT +L G+ V + + IP
Sbjct: 289 LYNLIVRHFLACVSPDNVAATTSVNAVFGEEKFTTSGTAVLERGWLEVYPYERWHSTCIP 348
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT 522
+K + +V + +TTPP LTE+ LI+LM KHGIGTDA++ +I + R V
Sbjct: 349 AYKRVERFTPTAVNLERHRTTPPSTLTEANLIALMNKHGIGTDATVAQYIKTVLDRECVK 408
Query: 523 VTSGRRLVPTSLGIVLVHGYQKIDR-ELVEPTMRS 556
G LV T+ G L Y+ + L++P +R+
Sbjct: 409 KREGTSLVLTTFGNALASAYEAVGLVSLLQPQLRA 443
>gi|409722530|ref|ZP_11269978.1| DNA topoisomerase I [Halococcus hamelinensis 100A6]
gi|448724451|ref|ZP_21706958.1| DNA topoisomerase I [Halococcus hamelinensis 100A6]
gi|445785768|gb|EMA36554.1| DNA topoisomerase I [Halococcus hamelinensis 100A6]
Length = 841
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 166/543 (30%), Positives = 262/543 (48%), Gaps = 41/543 (7%)
Query: 28 LQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSC---- 83
++R NG +V++W G + + GH++ DF +Y NW V P+EL
Sbjct: 26 VERRNGV-NVYKWGG--------RRCVGLSGHVVENDFPPEYANWRDVQPVELIDADVVV 76
Query: 84 -PTEKREATPK-LKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPK 141
P E RE + L+L A +D + +V+ D D+EGE I E + VR S
Sbjct: 77 EPHESRENIVRTLRLLA------RDADGVVIATDYDREGELIGKEAHDLVRDV----SDA 126
Query: 142 TVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG 201
V RARFS+ ++++K A NL + A + +ARQE+DL G A TR+ + + +
Sbjct: 127 PVKRARFSSFAEREVKEAFSNLEDLDFDLAAAGEARQEIDLVWGAALTRFLSLAAKQRGE 186
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-----SR 256
D IS G Q+PTL V+R +I F PE YW L L + A V + R
Sbjct: 187 DF----ISVGRVQSPTLKLIVDREREIEAFDPETYWELFADLATDEAAFEVQYFDANEGR 242
Query: 257 G--HIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPH 314
G ++D+S ++A+++ TV V T++ P NT + +R A S LG
Sbjct: 243 GTDRVWDESLAESVYEALQETSTATVEKVSRRTRTDDPPDPFNTTQYIRAAGS-LGYSAS 301
Query: 315 HAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPR 374
AM +AE LYT GY++YPRT+ T YP++ D+ +L + ++G+ ++L +
Sbjct: 302 RAMSLAEELYTSGYITYPRTDNTVYPDDLDIEDLLSDLSTHREFGEDAEDLLDGDCTPTE 361
Query: 375 KGKDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADE 433
++ DHPPI PT +L + + L D +Y+ +VR F+ T+ + V D
Sbjct: 362 GDEETTDHPPIHPTGELPSGSALGDDEREIYELVVRRFLATVADPAEWEHLQVTARVGDH 421
Query: 434 MFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESEL 493
K L+ PG+ V + +PD G+ +P++ V++ E++T PP +S L
Sbjct: 422 SLKANGKRLVEPGYHAVYPYFNTSENHVPDLDEGEELPVEDVRLDEKETQPPRRRGQSRL 481
Query: 494 ISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPT 553
I ME+ GIGT A+ I + R Y+ R PT L +V ++ +V
Sbjct: 482 IERMEEMGIGTKATRHNTIEKLYDRGYIESDPPR---PTRLARAVVDAGEQYADLVVSEA 538
Query: 554 MRS 556
M S
Sbjct: 539 MTS 541
>gi|448365799|ref|ZP_21554053.1| DNA topoisomerase I [Natrialba aegyptia DSM 13077]
gi|445654408|gb|ELZ07259.1| DNA topoisomerase I [Natrialba aegyptia DSM 13077]
Length = 826
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 161/535 (30%), Positives = 253/535 (47%), Gaps = 32/535 (5%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF S+Y++W V+P+EL EK
Sbjct: 28 RENG-VNVYEWGGT--------RCVGLSGHVVGVDFPSEYSDWRDVEPVELIDASVEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L ++ + + D D+EGE I E + VR ++ + R RFS
Sbjct: 77 TATKENIVATLRILSRKATQVTIATDYDREGELIGKEAYDIVRE---VDDEVPIRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ ++ A + + A + +ARQ +DL G A TR F G L IS
Sbjct: 134 SITETEVTDAFDEPDELDFDLAAAGEARQIIDLVWGAALTR----FLSLSAGQLGNDFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW--------SRGHIFD 261
G Q+PTL V+R +I+ F PE YW L + A + +++
Sbjct: 190 VGRVQSPTLRLIVDREREIQAFDPEDYWELVADVAKGEEAFEAQYFYYDEDDNEAERVWE 249
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
++T F+ + + + TVVDV T++ + P NT + +R A S LG AM IAE
Sbjct: 250 EATAEEVFETLSQRETATVVDVNRRTRTDSPPAPFNTTQFIRAAGS-LGYSAKRAMSIAE 308
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVG 380
LYT GY++YPRT+ T YP++ D +L P G+ +L P +G ++
Sbjct: 309 DLYTAGYITYPRTDNTVYPDDLDPEELLDDFVGHPSLGESAESLLDADDIVPTEGDEETT 368
Query: 381 DHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA 439
DHPPI PT ++ R + D W +++ +VR F T+ D V+ AD
Sbjct: 369 DHPPIHPTGEIPARGDVSDDEWEIFELVVRRFYATVAADAVWEHLKVVAEAADHRLKANG 428
Query: 440 KYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
K L+ PG+ V + + +PD + G+ I I V++ +++T PP +S LI ME
Sbjct: 429 KRLVEPGYHDVYPYFSTTENYVPDVEEGEAISITDVELEDKQTQPPRRYGQSRLIETMED 488
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
GIGT ++ I + R Y+ R PT L + +V + +V M
Sbjct: 489 MGIGTKSTRHETIQKLYDRGYIESDPPR---PTKLAMAVVEAAENYADRVVSEDM 540
>gi|20091341|ref|NP_617416.1| DNA topoisomerase I [Methanosarcina acetivorans C2A]
gi|19916471|gb|AAM05896.1| DNA topoisomerase, type I [Methanosarcina acetivorans C2A]
Length = 752
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 155/505 (30%), Positives = 243/505 (48%), Gaps = 20/505 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP-KLKLPAFLANEAKDCEFLV 111
+ + GHI+G+DF +YNNW KVD L TP K+ L K+ + +
Sbjct: 50 VVGLSGHIVGIDFQKEYNNWQKVDARALIDAEIT---TTPINRKIVTALRTLGKEADRVT 106
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
+ D D+EGE I E + ++ +N R R+SAIT K I AA N + A
Sbjct: 107 IATDYDREGELIGVEALNIIK---KVNPEVPFDRVRYSAITPKAIDAAFTNPTSVDFDLA 163
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+ +RQ +DL G A TRY G+ G + +S G Q+PTL V+R + F
Sbjct: 164 DAGHSRQVIDLVWGAALTRY-ISLAAGRLGKM---FLSVGRVQSPTLSLVVDREKERNIF 219
Query: 232 KPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
P PYW + + L G S S DK FK + K+ + +++ TKS
Sbjct: 220 VPTPYWEIHVELETKAGETFSAQHSTRRFLDKEEATAVFKKLGKKAELK--EIEKGTKSD 277
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
P NT + A+S +G+ P +AM+IAE LYT GY+SYPRT+ T YPE DL A +
Sbjct: 278 LPPTPFNTTGFISAANS-IGLSPANAMRIAESLYTNGYISYPRTDNTVYPETLDLRAQIE 336
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVR 409
P + + +L P +GK + DHPPI P LA ++L + W++Y+ +VR
Sbjct: 337 IFTEGP-FKEFADALLEKAELVPTRGKKETTDHPPIYPASLAKESELKEEEWKVYELVVR 395
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDL 469
F T G + + + E F LL PG+ ++ ++ P+ G++
Sbjct: 396 RFFATFAGPSTWETMRLRLEINAEEFRANGARLLEPGWRWYYPYNVPEDRLFPELSEGEI 455
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRL 529
+ + +M++++T PP + LI++ME+ G+GT A+ I+ + R Y+ G +
Sbjct: 456 LKVIKKEMLDKETQPPGRYGQGRLINIMEELGLGTKATRHEIISKLYSRAYI---HGNPV 512
Query: 530 VPTSLGIVLVHGYQKIDRELVEPTM 554
PT+ +V +K + +P M
Sbjct: 513 QPTNTSFAVVETLEKYSPTITKPDM 537
>gi|383320621|ref|YP_005381462.1| DNA topoisomerase I [Methanocella conradii HZ254]
gi|379321991|gb|AFD00944.1| DNA topoisomerase I [Methanocella conradii HZ254]
Length = 706
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 156/506 (30%), Positives = 252/506 (49%), Gaps = 20/506 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+ + GHI+ +DF ++YNNW V P EL E R + K+ + L AK+ + +
Sbjct: 41 VIGLSGHIVNIDFPAEYNNWQNVSPRELIWAKAETRYT--QKKIVSALKKLAKEASRVTI 98
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVW-RARFSAITDKDIKAAMWNLVKPNIFEA 171
D D+EGE I E ++ +P ++ RAR+SAIT +I+ A N V + A
Sbjct: 99 ATDFDREGELIGVEAYNIIKDA----NPSVIFDRARYSAITKPEIEHAFANTVPLDFNLA 154
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+ +ARQ++DL G A TR F G L S +S G QTP L V+R I++F
Sbjct: 155 AAGEARQKIDLVWGAALTR----FISLTCGRLGNSFLSVGRVQTPLLALIVDREKDIKSF 210
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
P PYW L T + +G + + +K+ + + V V+ + + +
Sbjct: 211 VPTPYWELYATFS-DGEEFTAGHAGNRFAEKAKAEAILARLGRIGKV--VEFKKEPRPEY 267
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
P +T E +R A++G+G +AM+IAE LY G++SYPRT+ T YP + +L + Q
Sbjct: 268 PPIPFSTTEFIR-AAAGIGFSAANAMRIAENLYVNGWISYPRTDNTVYPSSLNLKEAVSQ 326
Query: 352 QESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRH 410
++ + +++L G KP +GK + DHPPI P A+++ L D WR+Y+ +V
Sbjct: 327 FIGG-EFDKYAQKLLEQGEFKPSRGKKETTDHPPIYPVANASKSDLKADEWRIYELVVSR 385
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLI 470
F TL + + A V E F L+ PG+ + K E +P+ K G+ +
Sbjct: 386 FFATLAPPAEWEVRSACIDVDGEKFKAGGSLLVAPGWRLYYPYGMPKEEMLPELKVGEEL 445
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLV 530
++ V++ E+ T PP + +L+ +ME G+GT ++ I + RNYV G V
Sbjct: 446 KVKDVRIDEKLTKPPVRYGQGKLVKMMEDLGLGTKSTRHEAIQKLYARNYV---HGNPPV 502
Query: 531 PTSLGIVLVHGYQKIDRELVEPTMRS 556
PT+ +V +K + +P M S
Sbjct: 503 PTNTAFAVVGALEKYADPITKPDMTS 528
>gi|327400378|ref|YP_004341217.1| DNA topoisomerase I [Archaeoglobus veneficus SNP6]
gi|327315886|gb|AEA46502.1| DNA topoisomerase I [Archaeoglobus veneficus SNP6]
Length = 667
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 159/507 (31%), Positives = 240/507 (47%), Gaps = 34/507 (6%)
Query: 58 GHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCD 117
GHI+ LDF +YN+W V PL +E K + L A++ + + + D D
Sbjct: 49 GHIVELDFPKEYNSWKNV-PLRSLLRAELVKEVKEK-GIARLLKELAREVDRVTVATDYD 106
Query: 118 KEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDAR 177
+EGE I FE +E V+ +N V RA++SAIT DIK A N K +I A++ + R
Sbjct: 107 REGELIGFEALEIVKQ---VNPDVKVDRAKYSAITPADIKKAFSNPSKVDINLAKAAETR 163
Query: 178 QELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYW 237
Q +DL G TR G + +S G Q+PTL VER +I F+P PYW
Sbjct: 164 QRIDLIWGAVLTR----LISISSGRMGRDFLSVGRVQSPTLRLIVEREKEIENFRPTPYW 219
Query: 238 LLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKH-------VTVVDVQSSTKSK 290
+ + G F F + + V + + +
Sbjct: 220 -----------EIVAEFCNGECFTAKHVERFTDVAKAKAAFKKIGNTAAVRTFEKKERKE 268
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
+P NT E +R AS M P AM +AE LY GY+SYPRT+ T YP +L A+
Sbjct: 269 ARPTPFNTTEFLREASKF--MSPDRAMNVAETLYMNGYISYPRTDNTIYPPTLNLKAIAT 326
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVR 409
+S D+ + VLS KP +GK + DHPPI PT +A + +L + W +Y+ +VR
Sbjct: 327 SFLNS-DFEKEAKIVLSQPSIKPSRGKKESKDHPPIYPTAVAKKGELSKEEWTIYELVVR 385
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDL 469
F+ TL + ++ K + E+F + LL PG+ + +S + SIPD G +
Sbjct: 386 RFLATLAPEAIWEVKRVEIDANGELFRATGRRLLSPGWRAIYIYSKAEEVSIPDLTVGQI 445
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRL 529
+ I++ +++E++T PP T LI +MEK G+GT ++ I + R YV G L
Sbjct: 446 LRIKNKELLEKETKPPGRYTTGNLIRIMEKLGLGTKSTRHEIIKKLYSRKYVY---GNPL 502
Query: 530 VPTSLGIVLVHGYQKIDRELVEPTMRS 556
PT ++ + + P M S
Sbjct: 503 RPTQTAFAVIEALKSNAETITLPDMTS 529
>gi|432328623|ref|YP_007246767.1| DNA topoisomerase I, archaeal [Aciduliprofundum sp. MAR08-339]
gi|432135332|gb|AGB04601.1| DNA topoisomerase I, archaeal [Aciduliprofundum sp. MAR08-339]
Length = 747
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 157/503 (31%), Positives = 259/503 (51%), Gaps = 32/503 (6%)
Query: 58 GHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCD 117
GHI+ LD+ K+ +W+ D +L E + + + + L N AKD + L++ D D
Sbjct: 52 GHILQLDYPEKFKSWNLKDLQKLVD--EEPVKIVKEKGVASTLKNLAKDADLLIIATDYD 109
Query: 118 KEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDAR 177
+EGE I E + ++ V RA+FSA+T+++IK A NLV N A + + R
Sbjct: 110 REGELIGVEALSISGYR------GKVKRAKFSALTEQEIKNAFENLVDVNYNLASAAETR 163
Query: 178 QELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYW 237
Q++DL G + TR+ + + + D +S G Q+PTL V+R +I +F+P PYW
Sbjct: 164 QKIDLAWGASLTRFISLASRRRGKDY----LSVGRVQSPTLALIVKREREIESFEPTPYW 219
Query: 238 LLDLTLNLNGVAVSVTWSRGH-----IFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
+ + + RG I+ + ++ ++ V++ TK
Sbjct: 220 NIGAKFHKRRIF------RGEHIANPIWKEEEAKKIYEKIKDCNVGKVLEYVEGTKKIRP 273
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P NT E + A+ LG AM+IAE LY GY+SYPRT+ T YP + ++ A+L+
Sbjct: 274 PSPFNTTEFLSEATK-LGFSAARAMRIAEDLYMGGYISYPRTDNTVYPRSLNINAILKSL 332
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
E S + + V+++ P +GK + DHPPI P + A +LDG+ ++Y+ IVR F
Sbjct: 333 EKS-KFSEDVKKLQKERRKYPTRGKKESKDHPPIVPMRGA---KLDGERGKIYELIVRRF 388
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIP 471
TL D+ Y + AK S+ DE+F + + +L+ G+ +S + +P K G+ I
Sbjct: 389 FATLAPDMEYEESTAKISILDEIFVSKGRRILNEGWHYYYPYSKFEEIPMPRLKEGEEIR 448
Query: 472 IQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVP 531
++ V++V ++T PP T+S L+ MEK +GT ++ I + R YV G + P
Sbjct: 449 VKGVEIVRKETKPPSRYTQSSLLKEMEKLNLGTKSTRAEIIQKLFDRGYV---RGNPIRP 505
Query: 532 TSLGIVLVHGYQKIDRELVEPTM 554
T LG L+ +K ++V+P M
Sbjct: 506 TDLGKALIDSLEKNKVDVVKPDM 528
>gi|448337838|ref|ZP_21526911.1| DNA topoisomerase I [Natrinema pallidum DSM 3751]
gi|445624798|gb|ELY78171.1| DNA topoisomerase I [Natrinema pallidum DSM 3751]
Length = 843
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 160/552 (28%), Positives = 261/552 (47%), Gaps = 49/552 (8%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +++EW G + + GH++G+DF S+Y++W V+P+EL EK
Sbjct: 28 RENG-VNIYEWGGK--------RCVGLSGHVVGVDFPSEYSDWRDVEPVELIGADVEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L A+ + + + D D+EGE I E + VR N++ + R RFS
Sbjct: 77 TATKENIVATLRLLARRAQRVTIATDYDREGELIGKEAYDIVR---NVDEDVPIRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ +++ A + A + +ARQ +DL G A TRY + G+ GD IS
Sbjct: 134 SITENEVQNAFDEPDDLDFDLAAAGEARQIIDLVWGAALTRYLS-LSAGQLGD---DFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGH----------- 258
G Q+PTL V+R +I F PE YW + L + + S G
Sbjct: 190 VGRVQSPTLKLIVDREREIEAFDPEDYWEIFADLTKSEAQRASETSSGEEPRDDDTAFES 249
Query: 259 --------------IFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRV 304
++++ + ++ + + + TVVDV T++ T P+ NT + +R
Sbjct: 250 QYFYRDEDDNEAERVWEEDIADEVYETLAERESATVVDVTRRTRTDTPPEPFNTTQFIRA 309
Query: 305 ASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVRE 364
AS+ +G AM IAE LYT GY++YPRT+ T YP++ D +L + S P GD
Sbjct: 310 ASA-IGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLDEFVSHPSLGDSAES 368
Query: 365 VLSNGISKPRKG-KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYT 422
+L P +G ++ DHPPI PT ++ +R + D W +Y+ +VR F T+ V+
Sbjct: 369 LLEADEITPTEGDEETTDHPPIHPTGEIPSRGDISDDEWEVYELVVRRFYATVADAAVWE 428
Query: 423 QKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKT 482
D K L+ PG+ V + + +PD G+ + + V++ +++T
Sbjct: 429 HLKVVAETDDHRLKANGKRLVEPGYHDVYPYFSTTENYVPDVDEGETLALSDVELEDKQT 488
Query: 483 TPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGY 542
PP +S LI ME+ GIGT ++ + + R Y+ R PT L + +V
Sbjct: 489 QPPRRYGQSRLIETMEEMGIGTKSTRHNTLEKLYDRGYIESDPPR---PTKLAMAVVDAA 545
Query: 543 QKIDRELVEPTM 554
+ +V M
Sbjct: 546 ESYADRIVSEEM 557
>gi|383622530|ref|ZP_09948936.1| DNA topoisomerase I, partial [Halobiforma lacisalsi AJ5]
Length = 709
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 158/537 (29%), Positives = 259/537 (48%), Gaps = 34/537 (6%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF ++Y++W V+P+EL EK
Sbjct: 28 RENG-VNVYEWGGK--------RCVGLSGHVVGVDFPAEYSDWRDVEPVELIDADVEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L A+ + + D D+EGE I E E VR ++N + R RFS
Sbjct: 77 TATKENIVATLRILARKANRVTIATDYDREGELIGKEAYEIVR---DVNEEVPIRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ +++ A N + + A + +ARQ +DL G A TR+ + G+ GD IS
Sbjct: 134 SITENEVQDAFENPDELDFDLAAAGEARQIIDLIWGAALTRFLS-LSAGQLGD---DFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW--------SRGHIFD 261
G Q+PTL V+R +I+ F PE YW L L + + + +++
Sbjct: 190 VGRVQSPTLKLIVDREREIQAFDPEDYWELFADLAKDDTSFEAQYFYRDEDGNEAERVWE 249
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
++T + ++ + + TVVDV T++ T P NT + +R A + LG AM IAE
Sbjct: 250 EATADEVYETLADREAATVVDVNRRTRTDTPPTPFNTTQFIRAAGA-LGYSAQRAMSIAE 308
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNG---ISKPRKGKD 378
LYT GY++YPRT+ T YP++ + +L + GD +L + I R ++
Sbjct: 309 DLYTAGYITYPRTDNTVYPDDLEPADLLDEFVGHSVLGDSAESLLEDADDEIEPTRGDEE 368
Query: 379 VGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTM 437
DHPPI PT ++ +R + D W +++ +VR F T+ V+ V +
Sbjct: 369 TTDHPPIHPTGEIPSRGDVSDDEWEIFELVVRRFYATVADAAVWEHLKVVTEVDEYRLKS 428
Query: 438 EAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLM 497
K L+ PG+ V + + +PD G+ + + V++ E++T PP +S LI M
Sbjct: 429 NGKRLVEPGYHEVYPYFSTAENYVPDVDEGEELRLTDVELEEKQTQPPRRYGQSRLIETM 488
Query: 498 EKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
E GIGT ++ + + R Y+ R PT L + +V + +V M
Sbjct: 489 EDMGIGTKSTRHNTLEKLYDRGYIESDPPR---PTKLAMAVVDAAENYADRVVSEEM 542
>gi|336255063|ref|YP_004598170.1| DNA topoisomerase [Halopiger xanaduensis SH-6]
gi|335339052|gb|AEH38291.1| DNA topoisomerase [Halopiger xanaduensis SH-6]
Length = 826
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 158/535 (29%), Positives = 250/535 (46%), Gaps = 32/535 (5%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF +Y++W V+P EL EK
Sbjct: 28 RENG-VNVYEWGGK--------RCVGLSGHVVGVDFPDEYSDWRDVEPAELIDADVEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L A+ + + D D+EGE I E E VR ++N + R RFS
Sbjct: 77 TATKENIVATLRIFARKATSVTIATDYDREGELIGKEAYEIVR---DVNEDVPIRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ +++ A N + A + +ARQ +DL G A TR F G L IS
Sbjct: 134 SITENEVQEAFENPDDLDFDLAAAGEARQIIDLVWGAALTR----FLSLSAGQLGNDFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW--------SRGHIFD 261
G Q+PTL V+R +I+ F PE YW L L + + +++
Sbjct: 190 VGRVQSPTLKLIVDREREIQAFDPEDYWELFADLAKDDTTFESQYFYRDEDDNEAERVWE 249
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
++ + + + TVVDV T++ P NT + +R A + LG AM IAE
Sbjct: 250 EAAAEEVYDTLSQRDSATVVDVNRRTRTDAPPTPFNTTQFIRAAGA-LGYSAQRAMSIAE 308
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVG 380
LYT GY++YPRT+ T YP++ D +L P G+ ++L +P +G ++
Sbjct: 309 DLYTAGYITYPRTDNTVYPDDLDPEELLDDFVGHPTLGESAEDLLEADEIQPTEGDEETT 368
Query: 381 DHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA 439
DHPPI PT ++ R + D W +++ +VR F T+ V+ V D
Sbjct: 369 DHPPIHPTGEIPARGDVSDDEWEIFELVVRRFYATVAEAAVWEHLKVVSEVEDYRLKANG 428
Query: 440 KYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
K L+ PG+ V + + +PD + G+ + + V++ E++T PP +S LI ME
Sbjct: 429 KRLVEPGYHDVYPYFSTAENYVPDVEEGEELALSDVELEEKQTQPPRRYGQSRLIETMED 488
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
GIGT ++ + + R Y+ R PT L + +V + +V M
Sbjct: 489 MGIGTKSTRHNTLEKLYDRGYIESDPPR---PTKLAMAVVDAAENYADRVVSEEM 540
>gi|448395862|ref|ZP_21568956.1| DNA topoisomerase I [Haloterrigena salina JCM 13891]
gi|445660443|gb|ELZ13239.1| DNA topoisomerase I [Haloterrigena salina JCM 13891]
Length = 826
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 161/535 (30%), Positives = 256/535 (47%), Gaps = 32/535 (5%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF +Y++W V+P+EL EK
Sbjct: 28 RENGV-NVYEWGGK--------RCVGLSGHVVGVDFPDEYSDWRDVEPVELIDANVEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L A+ + + D D+EGE I E + VR +++ + R RFS
Sbjct: 77 TATKENIVATLRILARKATRVTIATDYDREGELIGKEAYDIVR---DVDEEVPIRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ ++++A + + A + +ARQ +DL G A TR F G L IS
Sbjct: 134 SITENEVQSAFDDPDDLDFDLAAAGEARQIIDLIWGAALTR----FLSLSAGQLGNDFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTW------SRGHIFD 261
G Q+PTL V+R +I+ F PE YW L DLT + + +++
Sbjct: 190 VGRVQSPTLKLIVDREREIQAFDPEIYWELFGDLTKDETTFEAQYFYRDEDDNEAERVWE 249
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
++ + ++ + + TVVDV T++ T P NT + +R A + LG AM IAE
Sbjct: 250 EAVADEVYETLAERDSATVVDVNRRTRTDTPPTPFNTTQFIRAAGA-LGYSAKRAMSIAE 308
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVG 380
LYT GY++YPRT+ T YP++ D +L S P GD +L P +G ++
Sbjct: 309 DLYTAGYITYPRTDNTVYPDDLDPEELLDDFVSHPTLGDSAESLLEADEIVPTEGDEETT 368
Query: 381 DHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA 439
DHPPI PT ++ TR + D W +++ +VR F T+ V+ V D
Sbjct: 369 DHPPIHPTGEIPTRGDVSDDEWEVFELVVRRFYATVADAAVWEHLKVVTEVDDYRLKSNG 428
Query: 440 KYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
K L+ PG+ V + + +PD G+ + + V++ E++T PP +S LI ME
Sbjct: 429 KRLVEPGYHDVYPYFSTSENYVPDVAEGEELALTDVELEEKETQPPRRYGQSRLIETMED 488
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
GIGT ++ + + R Y+ R PT L + +V + +V M
Sbjct: 489 MGIGTKSTRHNTLEKLYDRGYIESDPPR---PTKLAMAVVDAAESYADRVVSEEM 540
>gi|448694566|ref|ZP_21697066.1| DNA topoisomerase I [Halobiforma lacisalsi AJ5]
gi|445785151|gb|EMA35946.1| DNA topoisomerase I [Halobiforma lacisalsi AJ5]
Length = 844
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 158/537 (29%), Positives = 259/537 (48%), Gaps = 34/537 (6%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF ++Y++W V+P+EL EK
Sbjct: 28 RENG-VNVYEWGGK--------RCVGLSGHVVGVDFPAEYSDWRDVEPVELIDADVEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L A+ + + D D+EGE I E E VR ++N + R RFS
Sbjct: 77 TATKENIVATLRILARKANRVTIATDYDREGELIGKEAYEIVR---DVNEEVPIRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ +++ A N + + A + +ARQ +DL G A TR+ + G+ GD IS
Sbjct: 134 SITENEVQDAFENPDELDFDLAAAGEARQIIDLIWGAALTRFLS-LSAGQLGD---DFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW--------SRGHIFD 261
G Q+PTL V+R +I+ F PE YW L L + + + +++
Sbjct: 190 VGRVQSPTLKLIVDREREIQAFDPEDYWELFADLAKDDTSFEAQYFYRDEDGNEAERVWE 249
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
++T + ++ + + TVVDV T++ T P NT + +R A + LG AM IAE
Sbjct: 250 EATADEVYETLADREAATVVDVNRRTRTDTPPTPFNTTQFIRAAGA-LGYSAQRAMSIAE 308
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNG---ISKPRKGKD 378
LYT GY++YPRT+ T YP++ + +L + GD +L + I R ++
Sbjct: 309 DLYTAGYITYPRTDNTVYPDDLEPADLLDEFVGHSVLGDSAESLLEDADDEIEPTRGDEE 368
Query: 379 VGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTM 437
DHPPI PT ++ +R + D W +++ +VR F T+ V+ V +
Sbjct: 369 TTDHPPIHPTGEIPSRGDVSDDEWEIFELVVRRFYATVADAAVWEHLKVVTEVDEYRLKS 428
Query: 438 EAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLM 497
K L+ PG+ V + + +PD G+ + + V++ E++T PP +S LI M
Sbjct: 429 NGKRLVEPGYHEVYPYFSTAENYVPDVDEGEELRLTDVELEEKQTQPPRRYGQSRLIETM 488
Query: 498 EKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
E GIGT ++ + + R Y+ R PT L + +V + +V M
Sbjct: 489 EDMGIGTKSTRHNTLEKLYDRGYIESDPPR---PTKLAMAVVDAAENYADRVVSEEM 542
>gi|385802643|ref|YP_005839043.1| DNA topoisomerase I [Haloquadratum walsbyi C23]
gi|339728135|emb|CCC39257.1| DNA topoisomerase I [Haloquadratum walsbyi C23]
Length = 857
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 164/542 (30%), Positives = 261/542 (48%), Gaps = 45/542 (8%)
Query: 36 SVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK 95
+V++W G + + GH++ +DF +Y++W V+P+EL P EK K
Sbjct: 37 NVYKWGGK--------RCIGLSGHVVAVDFPQEYSDWRDVEPIELIDAPIEKNPT--KQN 86
Query: 96 LPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKD 155
+ L A+ +++ D D+EGE I E E VR ++N ++P + R RFS+IT++
Sbjct: 87 IVTTLKKLARRARRVIIATDYDREGELIGKEAYELVR-RVNESTP--IDRVRFSSITEES 143
Query: 156 IKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQT 215
+ A N + A + +ARQ +DL G A TRY G L + IS G Q
Sbjct: 144 VTTAFENPDDLDFNLAAAGEARQVIDLVWGAALTRY----LSLSAGQLGSDFISVGRVQG 199
Query: 216 PTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTWSRG---------------- 257
PTL V+R +I F PE YW L DLT + VS +
Sbjct: 200 PTLKLIVDREREIEAFDPEDYWELFVDLTQADKPIEVSTDDTTAGFEAQYFYHADDGTEA 259
Query: 258 -HIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHA 316
I ++ST F+ +E V V+ T++ P NT + + A S +G A
Sbjct: 260 ERITEESTAKTVFETLESASIAHVDSVKRRTRTDEPPAPFNTTQFISAAGS-IGYAAQRA 318
Query: 317 MQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG 376
M IAE LYT GY++YPRT+ T YP++ D ++ + +G R+VL P G
Sbjct: 319 MDIAEDLYTAGYITYPRTDNTVYPDDLDPRELIEALTNGSRFGSDARDVLDQETLSPTTG 378
Query: 377 -KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM 434
++ DHPPI PT +L ++LD D W +Y+ IVRHF+ T+ + + + ++ D+
Sbjct: 379 DEETTDHPPIHPTDELPKPSELDDDKWEVYELIVRHFLATVSNPATW-EHLRIVAIVDDA 437
Query: 435 FTMEA--KYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESE 492
+++++ + LL+PG+ V +S IPD + G+ + + ++ ++T PP +S
Sbjct: 438 YSIKSNGRRLLNPGYHAVYPYSNATESLIPDIEDGETLRLIDSRIEAKQTQPPRRYGQSR 497
Query: 493 LISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEP 552
LI ME GIGT +S I + R Y+ R PT L +V ++ +V
Sbjct: 498 LIETMESMGIGTKSSRHNVIQKLYNRGYIESDPPR---PTQLARAVVEAAEEFAELIVSE 554
Query: 553 TM 554
M
Sbjct: 555 EM 556
>gi|448374321|ref|ZP_21558206.1| DNA topoisomerase I [Halovivax asiaticus JCM 14624]
gi|445660998|gb|ELZ13793.1| DNA topoisomerase I [Halovivax asiaticus JCM 14624]
Length = 832
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 162/539 (30%), Positives = 254/539 (47%), Gaps = 36/539 (6%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF +Y +W V+P+EL EKR
Sbjct: 28 RENG-VNVYEWGGK--------RCVGLSGHVVGVDFPPEYGDWRDVEPVELIDASVEKRP 78
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L A+ E + + D D+EGE I E E VR +++ + R RFS
Sbjct: 79 T--KENIVATLRLLARRAEQVTIATDYDREGELIGKEAYEIVR---DVDEDVPIRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ ++ A + A + +ARQ +DL G + TR F G L IS
Sbjct: 134 SITENEVTRAFDQPESLDFDLAAAGEARQIIDLVWGASLTR----FLSLSAGQLGNDFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL---NLNGVAVSVTW--------SRGH 258
G Q+PTL V+R +I F P+ YW L L + +G A +
Sbjct: 190 VGRVQSPTLKLLVDREREIEAFDPDDYWELFADLIKDDGDGDAFEAQYFYRDEDDNEAER 249
Query: 259 IFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQ 318
++++S F+ + TVVDV T++ T P NT + +R AS+ +G AM
Sbjct: 250 VWEESVAESVFETLSSASEATVVDVNRRTRTDTPPAPFNTTQFIRAASA-IGYSAKRAMS 308
Query: 319 IAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVL--SNGISKPRKG 376
IAE LYT GY++YPRT+ T YP++ D A+L P G+ ++L + +
Sbjct: 309 IAEDLYTAGYMTYPRTDNTVYPDDLDPEALLDDFVGHPTLGESAEDLLETDDDLVATEGD 368
Query: 377 KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMF 435
++ DHPPI PT ++ R ++ D W +++ +VR F TL + VAD
Sbjct: 369 EETTDHPPIHPTGEIPARGEVSDDEWEIFELVVRRFYATLADAARWEHLKVVADVADHSL 428
Query: 436 TMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELIS 495
K L+ PG+ V + +PD G+ + + ++ E++T PP +S LI
Sbjct: 429 KANGKRLVEPGYHAVYPYFNTSENFVPDVTEGETLTLSDAEIEEKQTQPPRRYGQSRLIE 488
Query: 496 LMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
ME+ G+GT ++ I + R YV R PT L + +V ++ E+V M
Sbjct: 489 TMEEMGVGTKSTRHNIIEKLYDRGYVEDDPPR---PTRLAMAVVDAAEQFADEVVSEEM 544
>gi|224013088|ref|XP_002295196.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969158|gb|EED87500.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 1417
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 134/348 (38%), Positives = 187/348 (53%), Gaps = 25/348 (7%)
Query: 215 TPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEK 274
TPTLGFCV+RH ++ TFKPEPYWL+DL + G W G F+++ + +
Sbjct: 782 TPTLGFCVQRHVEMETFKPEPYWLMDLGVMNAGTMCRAVWDSGRSFNRNKVDDLVAKCKN 841
Query: 275 EKHVTVVDVQS---STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSY 331
V + + + +P +NTV +++ S LG+GPH A+ IAERLY GY+SY
Sbjct: 842 SSSAVFAKVDAVVTKNRHQGRPVPMNTVAMLKACSKVLGIGPHAALSIAERLYLSGYLSY 901
Query: 332 PRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLA 391
PRTE+T+YP++FD+V L++Q WG +V E+L +G + + G D+GDH I+ + ++
Sbjct: 902 PRTESTKYPKSFDIVGTLKEQSYDNRWGQYVGELLKSGPNVGKGGADMGDHLTISTSSIS 961
Query: 392 TRTQLDGDAWR---LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
QL + LY GD + + F+ D+ A
Sbjct: 962 LHCQLVTPGFLAIVLYKQYGDEADEGNGGDDEEEKALPPFAEGDQFGLFFAGSAKSGKVC 1021
Query: 449 GVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASI 508
W+ + D K E+ TTPP YLTESELIS MEKHGIGTDASI
Sbjct: 1022 VSDKWATL------DVK-------------EKMTTPPTYLTESELISKMEKHGIGTDASI 1062
Query: 509 PVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
HI NI +RNYV + SGR+L P+ LG+VL GY ID LV P +R+
Sbjct: 1063 STHIENIMKRNYVELISGRKLKPSRLGLVLAQGYHLIDSSLVLPQIRA 1110
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 37 VHEWVGPLFGDL-----VLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREAT 91
+E+ P F V ++TSV GH+ +DF S+Y +WD VDP ELF P ++
Sbjct: 677 TYEFTNPPFNKAPQASKVTHRVTSVAGHVFNVDFPSEYQSWDSVDPAELFHAPVVRKPC- 735
Query: 92 PKLKLPAFLANEAKDCEFLVLWLDCDK 118
K + L + AK +F+VLW+DCD+
Sbjct: 736 -KGSVVRHLQDVAKGVDFIVLWMDCDR 761
>gi|397781506|ref|YP_006545979.1| DNA topoisomerase I [Methanoculleus bourgensis MS2]
gi|396940008|emb|CCJ37263.1| DNA topoisomerase I [Methanoculleus bourgensis MS2]
Length = 931
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 167/505 (33%), Positives = 244/505 (48%), Gaps = 29/505 (5%)
Query: 58 GHIMGLDFTSKYNNW-DKVD-PLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLD 115
GH++ +DF Y NW KV P L T K+ + K+ + AK + + + D
Sbjct: 48 GHVVEVDFEPGYTNWRSKVHTPRTLIDAGTVKKPT--EKKIVNLIQKLAKKADLVTIATD 105
Query: 116 CDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVD 175
D EGE I E E VR +N + RARFSAIT +I++A NL + A + +
Sbjct: 106 YDTEGELIGKEAYELVR---AVNPAVRINRARFSAITPAEIRSAFDNLTDLDFALAAAGE 162
Query: 176 ARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEP 235
RQ +DL G + TR+ + + G + ++S G Q+PTL V R +I F P+
Sbjct: 163 VRQMVDLMWGASLTRFIS--LAARRGGRN--ILSVGRVQSPTLAMIVNREREIENFVPQT 218
Query: 236 YWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQA 295
YW+L L V + G D + +A KE V V DV+ K+ P
Sbjct: 219 YWMLSLMTEKEEQPVEARHTAGRFTDHEAA-LAAEAGTKEPLV-VTDVKEGQKNDRAPAP 276
Query: 296 LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESS 355
+T + VA+S LG+ +AM++AE LY GY+SYPRT+ T YP++ DL A+L
Sbjct: 277 FDTTTFI-VAASRLGLSAANAMRLAEDLYMNGYISYPRTDNTVYPKSLDLNAILDTLRGG 335
Query: 356 PDWGD------HVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVR 409
D H R V + G K+ DHPPI PT ATR L D W++Y+ IVR
Sbjct: 336 VFDADIAWVRQHRRPVPTRG------KKESTDHPPIHPTGAATREALGQDRWKVYELIVR 389
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDL 469
F+ TL D + F + E + LL G+ V +S K + +P G+
Sbjct: 390 RFLATLSPDATWATVRCTFDASGEPYAATGSRLLSAGWRRVYPYSEAKEKILPVITAGER 449
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRL 529
+PI+SV + E++T PP ++S LI +ME+HG+GT ++ I + R YV G L
Sbjct: 450 LPIRSVNLEEKQTQPPARYSQSRLIQVMEEHGLGTKSTRHEVIGKLISRRYV---EGNPL 506
Query: 530 VPTSLGIVLVHGYQKIDRELVEPTM 554
PT +G + + EP M
Sbjct: 507 RPTLVGRAVTDALDNHAATITEPEM 531
>gi|110667236|ref|YP_657047.1| DNA topoisomerase I [Haloquadratum walsbyi DSM 16790]
gi|109624983|emb|CAJ51396.1| DNA topoisomerase I [Haloquadratum walsbyi DSM 16790]
Length = 857
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 164/542 (30%), Positives = 260/542 (47%), Gaps = 45/542 (8%)
Query: 36 SVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK 95
+V++W G + + GH++ +DF +Y++W V+P+EL P EK K
Sbjct: 37 NVYKWGGK--------RCIGLSGHVVAVDFPQEYSDWRDVEPVELIDAPIEKNPT--KQN 86
Query: 96 LPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKD 155
+ L A+ +++ D D+EGE I E E VR ++N ++P + R RFS+IT++
Sbjct: 87 IVTTLKKLARRARRVIIATDYDREGELIGKEAYELVR-RVNESTP--IDRVRFSSITEES 143
Query: 156 IKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQT 215
+ A N + A + +ARQ +DL G A TRY G L + IS G Q
Sbjct: 144 VTTAFENPDDLDFNLAAAGEARQVIDLVWGAALTRY----LSLSAGQLGSDFISVGRVQG 199
Query: 216 PTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTWSRGH--------------- 258
PTL V+R +I F PE YW L DLT + VS +
Sbjct: 200 PTLKLIVDREREIEAFDPEDYWELFVDLTQADKPIEVSTDDTAAEFEAQYFYHADDGTEA 259
Query: 259 --IFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHA 316
I ++ST F+ +E V V+ T++ P NT + + A S +G A
Sbjct: 260 ERITEESTAKTVFETLESASIAHVDSVKRRTRTDEPPAPFNTTQFISAAGS-IGYAAQRA 318
Query: 317 MQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG 376
M IAE LYT GY++YPRT+ T YP+ D ++ + +G R+VL P G
Sbjct: 319 MDIAEDLYTAGYITYPRTDNTVYPDELDPRELIEALTNGSRFGSDARDVLDQETLSPTTG 378
Query: 377 -KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM 434
++ DHPPI PT +L ++LD D W +Y+ IVRHF+ T+ + + + ++ D+
Sbjct: 379 DEETTDHPPIHPTDELPKPSELDDDKWEVYELIVRHFLATVSNPATW-EHLRIVAIVDDT 437
Query: 435 FTMEA--KYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESE 492
+++++ + LL+PG+ V +S IPD + G+ + + ++ ++T PP +S
Sbjct: 438 YSIKSNGRRLLNPGYHAVYPYSNATESLIPDIEDGETLRLIDSRIEAKQTQPPRRYGQSR 497
Query: 493 LISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEP 552
LI ME GIGT +S I + R Y+ R PT L +V ++ +V
Sbjct: 498 LIETMESMGIGTKSSRHNVIQKLYNRGYIESDPPR---PTQLARAVVEAAEEFAELIVSE 554
Query: 553 TM 554
M
Sbjct: 555 EM 556
>gi|433638091|ref|YP_007283851.1| topoisomerase IA [Halovivax ruber XH-70]
gi|433289895|gb|AGB15718.1| topoisomerase IA [Halovivax ruber XH-70]
Length = 854
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 162/539 (30%), Positives = 253/539 (46%), Gaps = 36/539 (6%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF +Y +W V+P+EL EKR
Sbjct: 50 RENG-VNVYEWGG--------TRCVGLSGHVVGVDFPPEYGDWRDVEPVELIDASVEKRP 100
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L ++ E + + D D+EGE I E E VR +++ + R RFS
Sbjct: 101 T--KENIVATLRLLSRRAEQVTIATDYDREGELIGKEAYEIVR---DVDEDVPIRRVRFS 155
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ ++ A + A + +ARQ +DL G + TR F G L IS
Sbjct: 156 SITENEVTRAFDQPESLDFDLAAAGEARQIIDLVWGASLTR----FLSLSAGQLGNDFIS 211
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN---GVAVSVTW--------SRGH 258
G Q+PTL V+R +I F P+ YW L L + G A +
Sbjct: 212 VGRVQSPTLKLLVDREREIEAFDPDDYWELFAELAKDEDEGDAFEAQYFYRDEDDNEAER 271
Query: 259 IFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQ 318
++D+S F+ + TVVDV T++ T P NT + +R AS+ +G AM
Sbjct: 272 VWDESIAESVFETLSSASEATVVDVNRRTRTDTPPAPFNTTQFIRAASA-IGYSAKRAMS 330
Query: 319 IAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVL--SNGISKPRKG 376
IAE LYT GY++YPRT+ T YP++ D A+L P G+ ++L + +
Sbjct: 331 IAEDLYTAGYMTYPRTDNTVYPDDLDPEALLDDFVGHPTLGESAEDLLETDDDLVATEGD 390
Query: 377 KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMF 435
++ DHPPI PT ++ R ++ D W +++ +VR F TL + VAD
Sbjct: 391 EETTDHPPIHPTGEIPARGEVSDDEWEIFELVVRRFYATLADAARWEHLKVVADVADHSL 450
Query: 436 TMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELIS 495
K L+ PG+ V + +PD G+ + + ++ E++T PP +S LI
Sbjct: 451 KANGKRLVEPGYHAVYPYFNTSENFVPDVTEGETLALSDAEIEEKQTQPPRRYGQSRLIE 510
Query: 496 LMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
ME+ G+GT ++ I + R YV R PT L + +V ++ E+V M
Sbjct: 511 TMEEMGVGTKSTRHNIIEKLYDRGYVEDDPPR---PTRLAMAVVDAAEQFADEVVSEEM 566
>gi|448397774|ref|ZP_21569807.1| DNA topoisomerase I [Haloterrigena limicola JCM 13563]
gi|445672873|gb|ELZ25444.1| DNA topoisomerase I [Haloterrigena limicola JCM 13563]
Length = 826
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 163/536 (30%), Positives = 252/536 (47%), Gaps = 34/536 (6%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF +Y++W V+P+EL EK
Sbjct: 28 RENG-VNVYEWGGK--------RCVGLSGHVVGVDFPPEYSDWRDVEPVELIDASVEK-- 76
Query: 90 ATP-KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF 148
TP K + A L A+ E + + D D+EGE I E + VR ++ + R RF
Sbjct: 77 -TPTKENIVATLRLLARRAERVTIATDYDREGELIGKEAYDIVR---GVDEDVPIRRVRF 132
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
S+IT+ +++ A + A + +ARQ +DL G A TR F G L I
Sbjct: 133 SSITENEVQQAFDEPDDLDFDLAAAGEARQIIDLIWGAALTR----FLSLSAGQLGEDFI 188
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW--------SRGHIF 260
S G Q+PTL V+R +I F PE YW L L + + ++
Sbjct: 189 SVGRVQSPTLKLIVDREREIEAFDPEDYWELFADLQKDETRFEAQYFYRDEDDNEAERVW 248
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D+ST + ++ + + TVVDV T++ T P NT + +R ASS LG AM IA
Sbjct: 249 DESTADEVYETLAERDAATVVDVTRRTRTDTPPTPFNTTQFIRAASS-LGYSAKRAMSIA 307
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDV 379
E LYT GY++YPRT+ T YP++ D +L G+ +L P +G ++
Sbjct: 308 EDLYTAGYITYPRTDNTVYPDDLDPEELLDDFVGHSTLGESAESLLEADEITPTEGDEET 367
Query: 380 GDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
DHPPI PT ++ R + D W +++ +VR F T+ V+ V D
Sbjct: 368 TDHPPIHPTGEIPARGDISDDEWEIFELVVRRFFATVANAAVWEHLKVVAEVDDYRLKAN 427
Query: 439 AKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
K L+ PG+ V + + +PD G+ + + V++ ++T PP +S LI ME
Sbjct: 428 GKRLVEPGYHDVYPYFSTSENYVPDVDEGEELSLSDVELEAKETQPPRRYGQSRLIETME 487
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
+ GIGT ++ + + R YV R PT L + +V + +V M
Sbjct: 488 ELGIGTKSTRHDILEKLYDRGYVEGDPPR---PTRLAMAVVEAAEDYADRVVSEEM 540
>gi|395645621|ref|ZP_10433481.1| DNA topoisomerase type IA central domain protein [Methanofollis
liminatans DSM 4140]
gi|395442361|gb|EJG07118.1| DNA topoisomerase type IA central domain protein [Methanofollis
liminatans DSM 4140]
Length = 942
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 167/518 (32%), Positives = 252/518 (48%), Gaps = 32/518 (6%)
Query: 45 FGDLVLFKMTSVCGHIMGLDFTSKYNNW--DKVDPLELFSC-----PTEKREATPKLKLP 97
F D VL + GH++ +DF Y NW ++ P L PTEKR +
Sbjct: 38 FDDTVLVGLK---GHVVEVDFVEGYTNWRSEERPPRSLIDAGIVKRPTEKR-------IV 87
Query: 98 AFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIK 157
+ L AK + + + D D EGE I E E VR +N + RARFSAIT ++IK
Sbjct: 88 SLLQKLAKKADLVTIATDFDTEGELIGKEAYELVR---AVNKGVRILRARFSAITPQEIK 144
Query: 158 AAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPT 217
A L + + A + ++RQ +DL G + TR+ + + G A+++S G Q+PT
Sbjct: 145 RAFSELTELDFALAAAGESRQIIDLMWGASLTRFIS--IAARRGG--ANILSVGRVQSPT 200
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKH 277
L +R +I +F P+ YW+L L +G + + + G D K +
Sbjct: 201 LAMIADREKEIESFVPQKYWMLTLDTKKDGSPLELRHTHGRFVDHDDALAARKRTTEP-- 258
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
+TV +V+ K+ P +T L+ VA+ LG +AM++AE LY G++SYPRT+ T
Sbjct: 259 LTVTEVKEGVKNDRAPTPFDTTSLL-VAAGRLGFSAANAMRVAEDLYMNGFISYPRTDNT 317
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKLATRTQL 396
YP + +L VL +++ GD V V + +P +GK DHPPI PT AT QL
Sbjct: 318 VYPASLNLDEVLGVLKATAFSGD-VAWVERHRRPEPTRGKKSSTDHPPIHPTGAATPAQL 376
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM 456
+ W+LY+ +VR F+ TL D + F E +T+ L G+ V +S
Sbjct: 377 GEERWKLYELVVRRFLATLSPDARWLTMKVNFDAGGEPYTVTGGQLKEEGWRRVYPYSEA 436
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
IP G+ +PI V + E++T PP T+S LI ME+ G+GT ++ I +
Sbjct: 437 AERLIPACTVGERLPILGVNLEEKETQPPPRYTQSRLIQTMEELGLGTKSTRHEVIGKLV 496
Query: 517 QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
R YV G L PT +G +V +K + P M
Sbjct: 497 SRRYV---QGNPLRPTLVGRAVVESLEKHADTITRPDM 531
>gi|448731889|ref|ZP_21714172.1| DNA topoisomerase I [Halococcus salifodinae DSM 8989]
gi|445805167|gb|EMA55390.1| DNA topoisomerase I [Halococcus salifodinae DSM 8989]
Length = 836
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 160/541 (29%), Positives = 254/541 (46%), Gaps = 41/541 (7%)
Query: 28 LQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSC---- 83
++R NG +V++W G + + GH++ DF ++Y+NW V+P+EL
Sbjct: 26 VERRNG-VNVYKWGG--------RRCVGLSGHVVENDFPAEYSNWRDVEPVELIDAEVVV 76
Query: 84 -PTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKT 142
P E RE + + L A+D + +++ D D+EGE I E + VR +
Sbjct: 77 EPHESRE-----NIVSTLRLLARDADGVIIATDYDREGELIGKEAHDIVREVTD----AP 127
Query: 143 VWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD 202
+ RARFS+ + +++ A NL + A + +ARQE+DL G A TR F
Sbjct: 128 IRRARFSSFAEPEVREAFENLDDLDFDLAAAGEARQEIDLVWGAALTR----FLSLSAKQ 183
Query: 203 LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-------S 255
+ + IS G Q+PTL V+R +I F P+ YW L L N +
Sbjct: 184 MGSDFISVGRVQSPTLKLIVDREREIEAFDPDDYWELFCDLTKNEATFEAQYFYDDDGSE 243
Query: 256 RGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHH 315
++D + + V +V+ T++ P NT + +R ASS LG
Sbjct: 244 AERVWDGDVAEAVYDDLRGASTAAVEEVRRRTRTDDPPAPFNTTQYIRAASS-LGYSAQR 302
Query: 316 AMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRK 375
AM +AE LYT GY++YPRT+ T YP++ D+ +L + P++GD + L G P +
Sbjct: 303 AMSLAESLYTAGYITYPRTDNTVYPDDLDVAELLSEFTDHPEFGDDA-DTLLEGEPTPTE 361
Query: 376 G-KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADE 433
G ++ DHPPI PT +L + T+L D +Y+ +VR F T+ + +V D
Sbjct: 362 GDEETTDHPPIHPTGELPSATELGDDERAVYELVVRRFFATVAEPAEWEHLRVTAAVGDH 421
Query: 434 MFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESEL 493
K LL G+ V + +PD + GD +P+ V+ ++T PP +S L
Sbjct: 422 RLKANGKRLLEAGYHAVYPYVDSTENHVPDVEEGDKLPVSEVRSEAKETQPPRRRGQSRL 481
Query: 494 ISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPT 553
I ME GIGT A+ I + R Y+ R PT+L +V ++ ++V
Sbjct: 482 IETMESMGIGTKATRHNTIEKLYDRGYIENDPPR---PTTLAKAVVQAGKRFAEQVVSEA 538
Query: 554 M 554
M
Sbjct: 539 M 539
>gi|448579765|ref|ZP_21644759.1| DNA topoisomerase I [Haloferax larsenii JCM 13917]
gi|445723101|gb|ELZ74751.1| DNA topoisomerase I [Haloferax larsenii JCM 13917]
Length = 852
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 168/542 (30%), Positives = 254/542 (46%), Gaps = 36/542 (6%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+RMNG +V++W G + + GH++G+DF +YN+W V+P+EL S P EK
Sbjct: 31 ERMNG-VNVYKWGGK--------RCIGLSGHVVGVDFPPEYNDWRDVEPVELISAPVEKH 81
Query: 89 EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF 148
+ + A L A+ + + D D+EGE I E E VR ++N + P V R RF
Sbjct: 82 PT--QENIVAALRRLARKAGNVTIATDYDREGELIGKEAYELVR-EVNEDVP--VDRVRF 136
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
S+IT +++ A N + + A + +ARQ +DL G A TR F L I
Sbjct: 137 SSITKREVTEAFENPDELDFDLAAAGEARQIIDLVWGAALTR----FLSLSARQLGNDFI 192
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTW----------SR 256
S G Q PTL V+R +I F PE YW L +LT + +G A S
Sbjct: 193 SVGRVQGPTLKLIVDREREIEAFDPEDYWELFSELTKDADGAAESFEAQYFYLDDDGTEA 252
Query: 257 GHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHA 316
I+D+ ++ + V V+ T++ P NT + +R A S +G A
Sbjct: 253 ERIWDEDAAQEAYEDLLGVDAAEVTAVKRRTRTDKPPAPFNTTQFIRAAGS-IGYSAQRA 311
Query: 317 MQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG 376
M IAE LYT GY++YPRT+ T YP++ D +L E + + +L +P +G
Sbjct: 312 MSIAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKEDAESLLEQEEIEPTEG 371
Query: 377 -KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM 434
+ DHPPI PT +L + + LD D W +Y+ +VR F T+ D V+ A
Sbjct: 372 DNETTDHPPIHPTGELPSASDLDEDEWDVYELVVRRFFATVAEDAVWEHLRVVAEAAGRT 431
Query: 435 FTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
K LL PG+ V + +PD + G+ + + + ++T PP +S LI
Sbjct: 432 LKANGKRLLEPGYHAVYPYFNSTESFVPDVEEGEELQLSDTHLDAKQTQPPRRYGQSRLI 491
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
ME+ GIGT A+ I + R Y+ R PT L +V + + +V M
Sbjct: 492 ETMEQMGIGTKATRHDVIQKLYDRGYIESDPPR---PTRLARAVVEASEDFAKLIVSEEM 548
Query: 555 RS 556
S
Sbjct: 549 TS 550
>gi|85001333|ref|XP_955385.1| DNA topoisomerase iii [Theileria annulata strain Ankara]
gi|65303531|emb|CAI75909.1| DNA topoisomerase iii, putative [Theileria annulata]
Length = 607
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 165/539 (30%), Positives = 258/539 (47%), Gaps = 68/539 (12%)
Query: 46 GDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCP--------TEKREATPKLKLP 97
G++ TSV GH+M LDF Y +W + ++LF+ + +L
Sbjct: 47 GNMCKMYFTSVKGHLMNLDFDQPYRSWHRTAIIDLFTGKFYQDLHIMSSTHSPIHHERLQ 106
Query: 98 AFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT----- 152
+ K K +CF V N V RA FS++T
Sbjct: 107 GYRKKHIK----------IRKNVLEVCFRV----------NKNMIVKRAIFSSVTSQFSF 146
Query: 153 -----DKDIKAAMWNLVKPN--IFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDA 205
+ DI+ A NL +PN + +V+ RQE+DLRIG A TRY T ++ + D A
Sbjct: 147 HYWNSESDIEHACVNLKQPNKNLANVGAVETRQEIDLRIGSAITRYLTLKYKTQI-DTKA 205
Query: 206 SLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTC 265
+++SYG CQ PTLGF VER I F EP+W + + + V +T I + S
Sbjct: 206 AILSYGTCQLPTLGFVVERFILIENFVSEPFWTIQVEVTQLAV---LTLYENCIQNPS-- 260
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
+ K ++KE K P L+T+E+ + S L + H MQ+AE LY
Sbjct: 261 GIIRKVLKKEVR------------KHPPLPLDTIEMNKDVSRYLRISSHKCMQLAEGLYN 308
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLS-NGISKPRKGKDVGD-HP 383
+G++SYPRTET +P + DL +++ + S P++ ++ +L+ +G +P KG + + HP
Sbjct: 309 KGFISYPRTETNVFPSSIDLKSIIGKLSSVPEFSEYTNTLLNEDGFHEPTKGNNNDEAHP 368
Query: 384 PITPTKLATRTQLDGDA-WRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYL 442
PI P TR + + + W LY+YI R F+ D + Q ++ E+F ++ +
Sbjct: 369 PIHPVNSLTRDRAESEEHWLLYEYITRRFLACCSKDSIGHQSNVILEISGELFNLKGLII 428
Query: 443 LHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGI 502
+ + ++ + + IP+F I + + + T PPD L+ES LI LM K+ I
Sbjct: 429 QERNWLNIYKYTTWEAKLIPNFSENQEILPNEIILKDGATQPPDLLSESNLIDLMNKNAI 488
Query: 503 GTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHG-----YQKIDRELVEPTMRS 556
GTDA++ HI I R Y R VPT+LG + +G YQ ID L +P +R+
Sbjct: 489 GTDATMHEHIQKIQDRFYCIKDDKLRFVPTNLGKAIYYGFKEYNYQNID--LTKPILRA 545
>gi|147919417|ref|YP_686844.1| DNA topoisomerase I [Methanocella arvoryzae MRE50]
gi|110622240|emb|CAJ37518.1| DNA topoisomerase I [Methanocella arvoryzae MRE50]
Length = 728
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 155/508 (30%), Positives = 244/508 (48%), Gaps = 24/508 (4%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+ + GHI+ +DF +YNNW P +L TE R K+ L +KD + +
Sbjct: 42 IVGLSGHIVNIDFPEQYNNWSVTAPKDLIRAETEMRYT--HKKIATALKKLSKDATSVTI 99
Query: 113 WLDCDKEGENI---CFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
D D+EGE I + ++ + I + RA+FSAIT +I A N V +
Sbjct: 100 ATDYDREGELIGVEAYRIISGFKPDIKFD------RAKFSAITKPEIDRAFSNRVPLDFN 153
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
A + +ARQ++DL G A TRY G L S +S G QTP L V+R +I+
Sbjct: 154 LAAAGEARQKIDLVWGAALTRY----ISLTCGRLGKSFLSVGRVQTPLLALLVDREKEIK 209
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKS 289
F PYW + TL NG + DK + + TVV+ + +S
Sbjct: 210 AFVSTPYWEIYATLG-NGTDFTAKHECNRFEDKKKADSVRAKLGSTG--TVVEYKKDARS 266
Query: 290 KTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL 349
P +T E +R ASS +G +AM+IAE LY G++SYPRT+ T YP + +L VL
Sbjct: 267 DAAPIPFSTTEFIRAASS-IGFSAANAMRIAENLYVNGWISYPRTDNTVYPSSLNLRDVL 325
Query: 350 RQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIV 408
Q ++ ++G++ R++L+ P +GK + DHPPI P A ++ + D WR+Y+ +V
Sbjct: 326 -QNFAAGEFGEYARKLLAMKTLVPTRGKKETTDHPPIYPVSSAKKSDMADDEWRVYELVV 384
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGD 468
R F TL + + ++ E F L G+ + K E +P + G+
Sbjct: 385 RRFFATLAPAATWETRNTTVDISGEKFKASGSKLTEAGWRYYYPYGMPKEEVLPALEVGE 444
Query: 469 LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRR 528
+ ++ ++M E+ T PP + L+ +ME G+GT ++ I + RNYV G
Sbjct: 445 TLKVKKIEMPEKMTQPPTRYGQGRLVKMMEDLGLGTKSTRHEAIQKLYARNYV---HGNP 501
Query: 529 LVPTSLGIVLVHGYQKIDRELVEPTMRS 556
PT+ I +V ++ + +P M S
Sbjct: 502 PQPTNTAIAVVDALERYADLITKPDMTS 529
>gi|448613477|ref|ZP_21663357.1| DNA topoisomerase I [Haloferax mucosum ATCC BAA-1512]
gi|445740374|gb|ELZ91880.1| DNA topoisomerase I [Haloferax mucosum ATCC BAA-1512]
Length = 840
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 168/542 (30%), Positives = 258/542 (47%), Gaps = 36/542 (6%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+RMNG +V++W G + + GH++G+DF +YN+W V+P+EL S P EK
Sbjct: 31 ERMNG-VNVYKWGGK--------RCIGLSGHVVGVDFPPEYNDWRDVEPVELISAPVEKH 81
Query: 89 EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF 148
+ + A L A+ + + D D+EGE I E E VR ++N V R RF
Sbjct: 82 PT--QENIVAALRRLARKAGNVTIATDYDREGELIGKEAYELVR---DVNEDVPVDRVRF 136
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
S+IT++++ A N + A + +ARQ +DL G A TR F L I
Sbjct: 137 SSITNREVTEAFENPDDLDFDLAAAGEARQIIDLVWGAALTR----FLSLSARQLGNDFI 192
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTWSRGHIFDKSTC- 265
S G Q PTL V+R +I F PE YW L LT + +G A S ++ D T
Sbjct: 193 SVGRVQGPTLKLIVDREREIEAFDPEDYWELFSKLTKDADGAAESFEAQYFYLDDDGTEA 252
Query: 266 -NVFFKAVEKEKHVTVVDVQSS--------TKSKTKPQALNTVELMRVASSGLGMGPHHA 316
++ + + + TV+DV+++ T++ P NT + +R A S +G A
Sbjct: 253 ERIWDEEAAESAYETVLDVETAEVTAVKRRTRTDKPPAPFNTTQFIRAAGS-IGYSAQRA 311
Query: 317 MQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG 376
M IAE LYT GY++YPRT+ T YP++ D +L E + D + +L +P +G
Sbjct: 312 MSIAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKDDAKSLLEQEEIEPTEG 371
Query: 377 -KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM 434
+ DHPPI PT +L + + L D W +Y+ +VR F T+ + V+ A
Sbjct: 372 DNETTDHPPIHPTGELPSASDLSEDEWDVYELVVRRFFATVAENAVWEHLRVVAEAAGLS 431
Query: 435 FTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
K LL PG+ V + +PD + G+ + + + ++T PP +S LI
Sbjct: 432 LKANGKRLLEPGYHEVYPYFNSTESFVPDVEEGESLVLSDTHLDAKQTQPPRRYGQSRLI 491
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
ME+ GIGT A+ I + R Y+ R PT L +V + + +V M
Sbjct: 492 ETMEQMGIGTKATRHDVIQKLYDRGYIESDPPR---PTRLARAVVEASEDFAKLIVSEEM 548
Query: 555 RS 556
S
Sbjct: 549 TS 550
>gi|448589917|ref|ZP_21649976.1| DNA topoisomerase I [Haloferax elongans ATCC BAA-1513]
gi|445735032|gb|ELZ86585.1| DNA topoisomerase I [Haloferax elongans ATCC BAA-1513]
Length = 855
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 167/542 (30%), Positives = 252/542 (46%), Gaps = 36/542 (6%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+RMNG +V++W G + + GH++G+DF +YN+W V+P+EL S P EK
Sbjct: 31 ERMNG-VNVYKWGGK--------RCIGLSGHVVGVDFPPEYNDWRDVEPVELISAPVEKH 81
Query: 89 EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF 148
+ + A L A+ + + D D+EGE I E E VR ++N + P V R RF
Sbjct: 82 PT--QENIVAALRRLARKAGNVTIATDYDREGELIGKEAYELVR-EVNEDVP--VDRVRF 136
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
S+IT +++ A N + + A + +ARQ +DL G A TR F L I
Sbjct: 137 SSITKREVTEAFENPDELDFDLAAAGEARQIIDLVWGAALTR----FLSLSARQLGNDFI 192
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTW----------SR 256
S G Q PTL V+R +I F PE YW L LT + +G A S
Sbjct: 193 SVGRVQGPTLKLIVDREREIEAFDPEDYWELFSKLTKDADGAAESFEAQYFYLDDDGTEA 252
Query: 257 GHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHA 316
I+D+ ++ + V V+ T++ P NT + +R A S +G A
Sbjct: 253 ERIWDEDAAQAAYEDLLSVDAAEVTAVKRRTRTDKPPAPFNTTQFIRAAGS-IGYSAQRA 311
Query: 317 MQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG 376
M IAE LYT GY++YPRT+ T YP++ D +L E + + +L +P +G
Sbjct: 312 MSIAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKEDAESLLEQEEIEPTEG 371
Query: 377 -KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM 434
+ DHPPI PT +L + + L D W +Y+ +VR F T+ D V+ A
Sbjct: 372 DNETTDHPPIHPTGELPSASDLSEDEWDVYELVVRRFFATVAEDAVWEHLRVVAEAAGRT 431
Query: 435 FTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
K LL PG+ V + +PD + G+ + + + ++T PP +S LI
Sbjct: 432 LKANGKRLLEPGYHAVYPYFNSTESFVPDVEEGEELQLSDTHLDAKQTQPPRRYGQSRLI 491
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
ME+ GIGT A+ I + R Y+ R PT L +V + + +V M
Sbjct: 492 ETMEQMGIGTKATRHDVIQKLYDRGYIESDPPR---PTRLARAVVEASEDFAKLIVSEEM 548
Query: 555 RS 556
S
Sbjct: 549 TS 550
>gi|397775425|ref|YP_006542971.1| DNA topoisomerase [Natrinema sp. J7-2]
gi|397684518|gb|AFO58895.1| DNA topoisomerase [Natrinema sp. J7-2]
Length = 826
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 161/535 (30%), Positives = 260/535 (48%), Gaps = 32/535 (5%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF S+Y++W V+P+EL + EK
Sbjct: 28 RENGV-NVYEWGGK--------RCVGLSGHVVGVDFPSEYSDWRDVEPVELINADVEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L A+ + + + D D+EGE I E + VR N++ + R RFS
Sbjct: 77 TATKENIVATLRLLARRAQRVTIATDYDREGELIGKEAYDIVR---NVDDDVPIRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ +++ A + A + +ARQ +DL G A TRY + G+ GD IS
Sbjct: 134 SITENEVQNAFDEPDDLDFDLAAAGEARQIIDLIWGAALTRYLS-LSAGQLGD---DFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW--------SRGHIFD 261
G Q+PTL V+R +I+ F+PE YW L L + + I++
Sbjct: 190 VGRVQSPTLKLIVDREREIQAFEPEEYWELFADLRKDETNFEAQYFYRDEDDNEAERIWE 249
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
+ + ++ + TVVDV T++ T P+ NT + +R AS+ +G AM IAE
Sbjct: 250 EPVADEVYETLADGDVATVVDVTRRTRTDTPPEPFNTTQFIRAASA-IGYSAKRAMSIAE 308
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVG 380
LYT GY++YPRT+ T YP++ D +L + S P GD +L P +G ++
Sbjct: 309 DLYTAGYITYPRTDNTVYPDDLDPEDLLDEFVSHPSLGDSAESLLEADEISPTEGDEETT 368
Query: 381 DHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA 439
DHPPI PT ++ +R + D W +Y+ +VR F T+ V+ AD
Sbjct: 369 DHPPIHPTGEIPSRGDISDDEWEVYELVVRRFYATVADAAVWEHLKVVAEAADHRLKANG 428
Query: 440 KYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
K L+ PG+ V + + +PD G+ + + +++ +++T PP +S LI ME
Sbjct: 429 KRLVEPGYHDVYPYFSTTENYVPDVDEGEELALSDIELEDKQTQPPRRYGQSRLIETMED 488
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
GIGT ++ + + R Y+ R PT L + +V + +V M
Sbjct: 489 MGIGTKSTRHNTLEKLYDRGYIESDPPR---PTKLAMAVVDAAENYADRIVSEEM 540
>gi|448737373|ref|ZP_21719414.1| DNA topoisomerase I [Halococcus thailandensis JCM 13552]
gi|445803833|gb|EMA54109.1| DNA topoisomerase I [Halococcus thailandensis JCM 13552]
Length = 827
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 163/544 (29%), Positives = 266/544 (48%), Gaps = 42/544 (7%)
Query: 28 LQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSC---- 83
++R NG +V++W G + + GH++ DF +Y NW V+P+EL
Sbjct: 26 VERRNGV-NVYKWGG--------RRCVGLSGHVVENDFPPEYANWRDVEPVELLDADVVV 76
Query: 84 -PTEKREATPK-LKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPK 141
P E RE + L+L A +D + +++ D D+EGE I E + VR S
Sbjct: 77 EPHESRENIVRTLRLLA------RDADGVIIATDYDREGELIGKEAADIVREV----SDA 126
Query: 142 TVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG 201
+ RARFS+ +++++ A NL + A + +ARQE+DL G A TR+ + + +
Sbjct: 127 PIKRARFSSFAEREVREAFDNLDDLDYDLAAAGEARQEIDLVWGAALTRFLSLTAKQRGN 186
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-----SR 256
D IS G Q+PTL V+R KI+ F PE YW L L + V + R
Sbjct: 187 DF----ISVGRVQSPTLKLIVDRERKIQAFDPETYWELFSDLRKDQTTFEVQYFDREAGR 242
Query: 257 G--HIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPH 314
G ++D+S + A+++ TV +V T++ P +NT + +R A S LG
Sbjct: 243 GTDRLWDESVAAEVYDALDEASAATVQEVSRRTRTDDPPSPMNTTQYIRAAGS-LGYSAQ 301
Query: 315 HAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPR 374
AM +AE LYT GY++YPRT+ T YP++ D+ +L + ++G+ +L + P
Sbjct: 302 RAMSLAEELYTAGYITYPRTDNTVYPDDLDIEELLEGFTNHREFGEDAEALLESEEIVPT 361
Query: 375 KG-KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVAD 432
+G ++ DHPPI PT +L + ++L D +Y+ +VR F T+ + ++ +
Sbjct: 362 EGDEETTDHPPIHPTGELPSASELGDDEREIYELVVRRFFATVADPAEWEHLRVTAAIDE 421
Query: 433 EMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESE 492
K L+ PG+ V + +P+ G+ +PI+ V+ E++T PP +S
Sbjct: 422 HHLKANGKRLVEPGYHAVYPYFNTSENHVPELDEGEELPIEDVRSEEKETQPPRRRGQSR 481
Query: 493 LISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEP 552
LI ME+ GIGT A+ I + R Y+ R PT L +V ++ +V
Sbjct: 482 LIERMEQMGIGTKATRHNTIEKLYDRGYIESDPPR---PTKLAEAVVEAAEQFADRVVSE 538
Query: 553 TMRS 556
M S
Sbjct: 539 EMTS 542
>gi|448343257|ref|ZP_21532197.1| DNA topoisomerase I [Natrinema gari JCM 14663]
gi|445623652|gb|ELY77052.1| DNA topoisomerase I [Natrinema gari JCM 14663]
Length = 826
Score = 234 bits (597), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 161/535 (30%), Positives = 259/535 (48%), Gaps = 32/535 (5%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF S+Y++W V+P+EL EK
Sbjct: 28 RENGV-NVYEWGGK--------RCVGLSGHVVGVDFPSEYSDWRDVEPVELIDADVEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L A+ + + + D D+EGE I E + VR N++ + R RFS
Sbjct: 77 TATKENIVATLRLLARRAQRVTIATDYDREGELIGKEAYDIVR---NVDDDVPIRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ +++ A + A + +ARQ +DL G A TRY + G+ GD IS
Sbjct: 134 SITENEVQNAFDEPDDLDFDLAAAGEARQIIDLIWGAALTRYLS-LSAGQLGD---DFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW--------SRGHIFD 261
G Q+PTL V+R +I+ F+PE YW L L + + + I++
Sbjct: 190 VGRVQSPTLKLIVDREREIQAFEPEEYWELFADLRKDETSFEAQYFYRDEDDNEAERIWE 249
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
+ N ++ + TVVDV T++ T P+ NT + +R AS+ +G AM IAE
Sbjct: 250 EPVANEVYETLADGDVATVVDVTRRTRTDTPPEPFNTTQFIRAASA-IGYSAKRAMSIAE 308
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVG 380
LYT GY++YPRT+ T YP++ D +L + S P GD +L P +G ++
Sbjct: 309 DLYTAGYITYPRTDNTVYPDDLDPEDLLDEFVSHPSLGDSAESLLEADEITPTEGDEETT 368
Query: 381 DHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA 439
DHPPI PT ++ +R + D W +Y+ +VR F T+ V+ D
Sbjct: 369 DHPPIHPTGEIPSRGDVSDDEWEVYELVVRRFYATVADAAVWEHLKVVAEANDHRLKANG 428
Query: 440 KYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
K L+ PG+ + + + +PD G+ + + V++ +++T PP +S LI ME
Sbjct: 429 KRLIEPGYHDIYPYFSTTENYVPDVDEGEELALSDVELEDKQTQPPRRYGQSRLIETMEG 488
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
GIGT ++ + + R Y+ R PT L + +V + +V M
Sbjct: 489 MGIGTKSTRHNTLEKLYDRGYIESDPPR---PTKLAMAVVDAAENYADRIVSEEM 540
>gi|386001200|ref|YP_005919499.1| DNA topoisomerase I [Methanosaeta harundinacea 6Ac]
gi|357209256|gb|AET63876.1| DNA topoisomerase I [Methanosaeta harundinacea 6Ac]
Length = 738
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 159/518 (30%), Positives = 252/518 (48%), Gaps = 22/518 (4%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
VH F D V+ ++ GHI+G+D+ YNNW KVD +L R + K+
Sbjct: 29 VHGIEAFYFDDKVVMGLS---GHIVGVDYPPGYNNWQKVDYRDLIHAEVVTRPT--QGKI 83
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
+ L + KD + + + D D+EGE I +EA+R + N R RFSAIT +I
Sbjct: 84 VSALHDLGKDADRITIATDYDREGELIG---VEALRIAEDANPTIKADRVRFSAITKGEI 140
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTP 216
+ A + + + A S +ARQ +DL G A TR F G L +S G Q+P
Sbjct: 141 QDAFESPGEVDFDLASSGEARQVVDLIWGAALTR----FISITSGRLGKGFLSVGRVQSP 196
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEK 276
TL V+R +I FKP+PYW + L + + V +G I++ F+ E +
Sbjct: 197 TLALIVDREKEIEAFKPQPYWEISACLEKD---LRVKHEKGRIWEGDLARSIFE--ELGE 251
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTET 336
TVV ++ T++ P +T + A+SG+G +AM+IAE LYT G++SYPRTE
Sbjct: 252 VATVVSIKEKTRTDRPPAPFDTTAFIS-AASGIGFSAANAMRIAEWLYTSGFISYPRTEN 310
Query: 337 TQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQL 396
T YP+ DL A++ + P D R VLS + R + DHPPI PT A + +
Sbjct: 311 TVYPKTLDLRALVSIFKKGPFREDAER-VLSGPMVPTRGKRFSTDHPPIYPTAPAAKADM 369
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM 456
D W++Y+ +VR F+ TL G + + + + F + G+ +S
Sbjct: 370 KPDQWKIYELVVRRFLATLSGPSRWIVMNVRVEIDGQPFRATGARQIEAGWRACYPYSKA 429
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
E +P G+ + + ++ E++T PP + L+ LM++ G+GT ++ I+ +
Sbjct: 430 AEEILPQLSEGEKLRVLGKELEEKETQPPSRYGQGRLVKLMDELGLGTKSTRHEIISKLY 489
Query: 517 QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
R YV G + PT+ +V Q+ + +P M
Sbjct: 490 ARAYV---QGNPMKPTNTAYAVVEALQQHSPNITKPDM 524
>gi|124485959|ref|YP_001030575.1| hypothetical protein Mlab_1139 [Methanocorpusculum labreanum Z]
gi|124363500|gb|ABN07308.1| DNA topoisomerase, type IA, central domain protein
[Methanocorpusculum labreanum Z]
Length = 935
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 161/526 (30%), Positives = 255/526 (48%), Gaps = 45/526 (8%)
Query: 44 LFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVD--PLELFSC-----PTEKREATPKLKL 96
+F D V+ + GH++ +DF YNNW V+ P L + PTEK K+
Sbjct: 37 VFDDTVVMGLR---GHVVEVDFVEGYNNWRSVEHPPRSLINADIVKKPTEK-------KI 86
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKD 155
+ K + + D D EGE I E E +R +PK + RARFSAIT +
Sbjct: 87 VGLMQKFGKKATRVTIATDYDTEGELIGKEAFELIRAA----NPKVPIDRARFSAITKDE 142
Query: 156 IKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQT 215
I ++ + A + ++RQ +DL G + TR+ + + D S++S G Q+
Sbjct: 143 IVKSIKEATSLDFNLASAGESRQIIDLVWGASLTRFLS-ITAHRGAD---SILSVGRVQS 198
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKE 275
PTL V+R +I F P YW+L L +G+ V G D + + A +
Sbjct: 199 PTLAMIVDREREIEAFVPTKYWMLSLATEKSGIGVEARHVHGRFTDSAEAKAAYDATVEP 258
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
VT DV + K P L+T L+ V +S LG+ +AM AE LY +G++SYPRT+
Sbjct: 259 LRVT--DVITGHKVDRAPTPLDTTALI-VGASRLGISASYAMNRAEDLYMRGFISYPRTD 315
Query: 336 TTQYPENFDL---VAVLRQQESSPDWG---DHVREVLSNGISKPRKGKDVGDHPPITPTK 389
T YP++ + +A+ S + G DH+R V + G K+ DHPPI PT
Sbjct: 316 NTAYPKSLKISEQLAIFAHGAFSKEAGYVKDHLRSVPTRG------KKETTDHPPIYPTS 369
Query: 390 LATRTQLDGD-AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
LA R ++ D +W+LY++IVR F T+C D + E +T+ +L G+
Sbjct: 370 LANREEIGDDVSWKLYEFIVRRFFATICIDAEWETMKVNLLAGSEPYTITGGRILEAGWR 429
Query: 449 GVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASI 508
G+ +S + +P F G+ +P+ + E++T PP ++S LI ME+ G+GT ++
Sbjct: 430 GIYPYSKAEENLLPAFTLGETLPLLAKTSDEKETQPPARYSQSRLIQRMEELGLGTKSTR 489
Query: 509 PVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
I+ + R Y+ G + PT +G + ++ + EPTM
Sbjct: 490 HEVISKLSGRKYI---EGNPMKPTIVGRAVTESLEEFAGTITEPTM 532
>gi|284164738|ref|YP_003403017.1| DNA topoisomerase I [Haloterrigena turkmenica DSM 5511]
gi|284014393|gb|ADB60344.1| DNA topoisomerase I [Haloterrigena turkmenica DSM 5511]
Length = 827
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 159/536 (29%), Positives = 256/536 (47%), Gaps = 33/536 (6%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF +Y++W V+P+EL EK
Sbjct: 28 RENGV-NVYEWGGK--------RCVGLSGHVVGVDFPDEYSDWRDVEPVELIDASVEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L A+ + + D D+EGE I E + VR +++ + R RFS
Sbjct: 77 TATKENIVATLRILARKATRVTIATDYDREGELIGKEAYDIVR---DVDEEVPIRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ ++++A + + A + +ARQ +DL G A TR F G L IS
Sbjct: 134 SITENEVQSAFDDPDDLDFDLAAAGEARQIIDLVWGAALTR----FLSLSAGQLGNDFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTW------SRGHIFD 261
G Q+PTL V+R +I+ F PE YW L DLT + +++
Sbjct: 190 VGRVQSPTLKLIVDREREIQAFDPETYWELFGDLTKEDTTFEAQYFYRDEDDNEAERVWE 249
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
++ + ++ + + TVVDV T++ T P+ NT + +R A + +G AM IAE
Sbjct: 250 EAVADEVYETLAERDSATVVDVNRRTRTDTPPEPFNTTQFIRAAGA-IGYSAKRAMSIAE 308
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVG 380
LYT GY++YPRT+ T YP++ D +L S P G+ +L P +G ++
Sbjct: 309 DLYTAGYITYPRTDNTVYPDDLDPEELLDDFVSHPTLGESAESLLEADEIVPTEGDEETT 368
Query: 381 DHPPITPT-KLATRT-QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
DHPPI PT ++ +R + D W +Y+ +VR F T+ V+ V D
Sbjct: 369 DHPPIHPTGEIPSRGGDVSDDEWEVYELVVRRFYATVADAAVWEHLKVVTEVDDYRMKSN 428
Query: 439 AKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
K L+ PG+ V + + +PD G+ + + V++ E++T PP +S LI ME
Sbjct: 429 GKRLVEPGYHDVYPYFSTSENYVPDVTEGEELALTDVELEEKETQPPRRYGQSRLIETME 488
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
GIGT ++ + + R Y+ R PT L + +V + +V M
Sbjct: 489 DMGIGTKSTRHNTLEKLYDRGYIESDPPR---PTKLAMAVVDAAENYADRVVSEEM 541
>gi|282165112|ref|YP_003357497.1| DNA topoisomerase I [Methanocella paludicola SANAE]
gi|282157426|dbj|BAI62514.1| DNA topoisomerase I [Methanocella paludicola SANAE]
Length = 704
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 155/506 (30%), Positives = 241/506 (47%), Gaps = 20/506 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+ + GHI+ +DF +YNNW P +L TE R + K+ L AK+ + +
Sbjct: 41 VVGLSGHIVNIDFPDEYNNWQSTAPKDLIWANTEMRYT--QKKIATALKKLAKEATHVTI 98
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVW-RARFSAITDKDIKAAMWNLVKPNIFEA 171
D D+EGE I E H I +P + RAR+SAIT ++I+ A N V + A
Sbjct: 99 ATDFDREGELIGVEAY----HIIKDAAPAAKFDRARYSAITRQEIEHAFANTVPIDFDLA 154
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+ +ARQ++DL G A TRY G L S +S G QTP L V+R I+ F
Sbjct: 155 AAGEARQKIDLVWGAALTRY----ISLTCGRLGNSFLSVGRVQTPLLALIVDREKDIKAF 210
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKT 291
P PYW + T NG + +K+ + + V D + + +
Sbjct: 211 TPTPYWEIYATFT-NGEEFVAGHTGNRFTEKAKAEGIMARLGRTGKV--ADYKKEPRVEY 267
Query: 292 KPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQ 351
P +T E +R A+S +G +AM+IAE LY G++SYPRT+ T YP + +L ++
Sbjct: 268 PPIPFSTTEFIRAAAS-IGFSAANAMRIAENLYVNGWISYPRTDNTVYPASLNLKEIV-A 325
Query: 352 QESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRH 410
Q + ++G + + +L KP +GK + DHPPI P A ++++ D WR+Y+ +V
Sbjct: 326 QFAGGEFGKYAQRLLEQSSFKPTRGKKETTDHPPIYPVASARKSEIKADEWRVYELVVSR 385
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLI 470
F TL Y + V E F L PG+ + K E +P+ G +
Sbjct: 386 FFATLAPPAEYEVRNVCVDVNGERFKATGSMLSTPGYRLYYPYGMAKEELLPELSVGQEL 445
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLV 530
+++ M E+ T PP + +L+ +ME G+GT ++ I + RNYV G V
Sbjct: 446 AVKNAAMDEKLTKPPVRYGQGKLVKMMEDLGLGTKSTRHEAIQKLYARNYV---HGNPPV 502
Query: 531 PTSLGIVLVHGYQKIDRELVEPTMRS 556
PT+ +V +K + +P M S
Sbjct: 503 PTNTAFAVVGALEKYADLITKPDMTS 528
>gi|147919524|ref|YP_686736.1| DNA topoisomerase I [Methanocella arvoryzae MRE50]
gi|110622132|emb|CAJ37410.1| DNA topoisomerase I [Methanocella arvoryzae MRE50]
Length = 767
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 156/505 (30%), Positives = 238/505 (47%), Gaps = 17/505 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+ + GHI+ LDF Y W P EL + K L LA A + +
Sbjct: 43 VIGLAGHILELDFPEAYQKWSAFPPRELIRAQVVTYPS--KKDLVGALATLATKVTRVTI 100
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
D D+EGE I E ++ I+SP T R R+S+ T ++I A + + A
Sbjct: 101 ATDYDREGEMIGVEAYNIIK---KISSP-TFDRVRYSSFTKEEITKAFASPTAVDFDLAA 156
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+ + RQE+DL G A TR+ K+G +S G QTP L V+R +I+ F
Sbjct: 157 AGECRQEIDLVWGAALTRF-VSIAGNKFGK---DFLSVGRVQTPLLALIVDREKEIQAFT 212
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
+PYW + TL + + + RG K K + K V DV++ K +
Sbjct: 213 SKPYWEIVATLLKEDRSFTASHKRGRFDKKEEAAAIHKKLGKT--AVVKDVKADRKKEQP 270
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P NT E ++ A+S LG AMQIAE LY G++SYPRT+ T YP+ +L +L
Sbjct: 271 PIPFNTTEFVK-AASALGFTAASAMQIAEALYINGWISYPRTDNTVYPDTLNLKDLLGIF 329
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
++SPD+ E+L+ P +GK + DHPPI P A R LD W+LY+ +VR +
Sbjct: 330 KTSPDFAKSALELLAMPSITPTRGKVETKDHPPIYPVACAMRKDLDDRQWKLYELVVRRY 389
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIP 471
TL + A+ ++ E F K L PG+ + K+E +P K GD +
Sbjct: 390 FATLSPACEWETIKAEIDISGEPFAANGKQLAVPGWRKHYPYGLQKDELLPPLKAGDPLL 449
Query: 472 IQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVP 531
++ ++E+KT PP + +L+ +ME G+GT A+ + + QR ++ G P
Sbjct: 450 VRKADLLEKKTEPPKRYGQGKLVQMMEDLGLGTKATRHEALAKLYQRGFI---EGNPPQP 506
Query: 532 TSLGIVLVHGYQKIDRELVEPTMRS 556
T+ GI L+ + + M S
Sbjct: 507 TATGISLIDALKAYASAITSNAMTS 531
>gi|320587954|gb|EFX00429.1| DNA topoisomerase [Grosmannia clavigera kw1407]
Length = 636
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 154/485 (31%), Positives = 233/485 (48%), Gaps = 40/485 (8%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLA 101
GP +G + MT V GH+ ++ +S++ +W P LF P + K + +
Sbjct: 40 GPPYGSCEV-TMTCVTGHMTAMELSSEFKDWKYPPPERLFDAPVQTIVPDDKKTIAENIE 98
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAM 160
+A+ + +W DCD+EGE+I E+ +A R P V RA FS I I A
Sbjct: 99 RQARYSRAVFIWTDCDREGEHIGSEIRDAARK----GKPTIEVRRAHFSNIERAHILNAA 154
Query: 161 WNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGF 220
+LV + + +V ELDLRIG AFTR+ T + G L ++SY
Sbjct: 155 RSLVALDERQVDAVSTHIELDLRIGFAFTRFLTNNLRALGGPLAELVLSY---------- 204
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTV 280
+H K + S TW+RGH+FD+++ V ++ K K V
Sbjct: 205 --VKHTK------------------DKATASFTWARGHLFDRASVIVLYERCLKAKKAEV 244
Query: 281 VDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP 340
V VQ + +P L TV L +A+ L + AM +AE LY +G++SYPRTET ++
Sbjct: 245 VKVQEKPIKRMRPLPLTTVTLQSMATRFLHVTGQQAMTMAETLYNKGFISYPRTETDRFD 304
Query: 341 ENFDLVAVLRQQESSPD-WGDHVREVLSNGISK-PRKGK-DVGDHPPITPTKLATRTQLD 397
+ +L A++++Q P WG R +L G + PR G+ D HPPI P A + L
Sbjct: 305 KGMNLRALVQKQTQDPQRWGAFARGLLDEGKFQWPRSGQHDDKAHPPIHPITYAAPSVLG 364
Query: 398 GDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK 457
D RLY+ +VR F+ D + + E F ++L + V +
Sbjct: 365 PDEGRLYELVVRRFLACCADDAKGMASDVEIAYGSERFKAHGVHVLERNYLDVYPYENWT 424
Query: 458 NES-IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
+ + +P F G++ M E KT P YLTE++LI+LM+ +GIGTDA++ HI I
Sbjct: 425 DTAELPPFVVGEIFTPTEAVMAEGKTAAPGYLTEADLIALMDANGIGTDATMAEHIQKIQ 484
Query: 517 QRNYV 521
RNYV
Sbjct: 485 DRNYV 489
>gi|448349641|ref|ZP_21538473.1| DNA topoisomerase I [Natrialba taiwanensis DSM 12281]
gi|445639434|gb|ELY92545.1| DNA topoisomerase I [Natrialba taiwanensis DSM 12281]
Length = 801
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 162/538 (30%), Positives = 252/538 (46%), Gaps = 38/538 (7%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF S+Y++W V+P+EL EK
Sbjct: 28 RENGV-NVYEWGGT--------RCVGLSGHVVGVDFPSEYSDWRDVEPVELIDASVEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L ++ + + D D+EGE I E + VR ++ + R RFS
Sbjct: 77 TATKENIVATLRILSRKATQVTIATDYDREGELIGKEAYDIVRE---VDDGVPIRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ ++K A + + A + +ARQ +DL G A TR F G L IS
Sbjct: 134 SITETEVKNAFDEPDELDFDLAAAGEARQIIDLVWGAALTR----FLSLSAGQLGNDFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKS------ 263
G Q+PTL V+R +I+ F PE YW L + A + +D+
Sbjct: 190 VGRVQSPTLRLIVDREREIQAFDPEDYWELVADVAKGEEAFEAQY---FYYDEDDNEAER 246
Query: 264 -----TCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQ 318
F+ + + + TVVDV T++ + P NT + +R A S LG AM
Sbjct: 247 VWEEAAAEEVFETLSQRETATVVDVNRRTRTDSPPAPFNTTQFIRAAGS-LGYSAKRAMS 305
Query: 319 IAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-K 377
IAE LYT GY++YPRT+ T YP++ D +L + P G+ +L P +G +
Sbjct: 306 IAEDLYTAGYITYPRTDNTVYPDDLDPEELLDEFVGHPSLGESAESLLETDDIVPTEGDE 365
Query: 378 DVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFT 436
+ DHPPI PT ++ R + D W +++ +VR F T+ D V+ AD
Sbjct: 366 ETTDHPPIHPTGEIPARGDVSDDEWDVFELVVRRFYATVAADAVWEHLKVVAEAADHRLK 425
Query: 437 MEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISL 496
K L+ PG+ V + + +PD + G+ I I V++ +++T PP +S LI
Sbjct: 426 ANGKRLVEPGYHDVYPYFSTTENYVPDVEEGEDISITDVELEDKQTQPPRRYGQSRLIET 485
Query: 497 MEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
ME GIGT ++ I + R Y+ R PT L + +V + +V M
Sbjct: 486 MEDMGIGTKSTRHETIQKLYDRGYIESDPPR---PTKLAMAVVEATENYADRVVSEDM 540
>gi|448306300|ref|ZP_21496208.1| DNA topoisomerase I [Natronorubrum bangense JCM 10635]
gi|445598359|gb|ELY52418.1| DNA topoisomerase I [Natronorubrum bangense JCM 10635]
Length = 828
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 160/537 (29%), Positives = 254/537 (47%), Gaps = 34/537 (6%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF S+Y++W V+P EL EK
Sbjct: 28 RENGV-NVYEWGGK--------RCVGLSGHVVGVDFPSEYSDWRDVEPAELIDADVEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L ++ + + D D+EGE I E E VR ++N + R RFS
Sbjct: 77 TATKENIVATLRILSRKATRVTIATDYDREGELIGKEAYEIVR---DVNEDVPIQRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ ++++A + + A + +ARQ +DL G + TR F G L IS
Sbjct: 134 SITENEVQSAFDEPDELDFDLAAAGEARQIIDLIWGASLTR----FLSLSAGQLGNDFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTW--------SRGHI 259
G Q+PTL V+R +I F PE YW L DL + + A + +
Sbjct: 190 VGRVQSPTLKLIVDREREIEAFDPESYWELFADLEKDDDTDAFEAQYFYRDEDDNEAERV 249
Query: 260 FDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQI 319
++++ + + + TVVDV T++ T P NT + +R ASS +G AM I
Sbjct: 250 WEEAVADEVYDTLSSHDSATVVDVTRRTRTDTPPTPFNTTQFIRAASS-IGYTAKRAMSI 308
Query: 320 AERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KD 378
AE LYT GYV+YPRT+ T YP++ + +L G+ +L P +G ++
Sbjct: 309 AEELYTAGYVTYPRTDNTVYPDDLEPEELLDDFVGHSTLGESAESLLEADEIVPTEGDEE 368
Query: 379 VGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTM 437
DHPPI PT ++ TR + D W +++ +VR F T+ V+ V D
Sbjct: 369 TTDHPPIHPTGEIPTRGDVSDDEWEIFELVVRRFFATVADAAVWEHLKVVAEVDDYRLKA 428
Query: 438 EAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLM 497
K L+ PG+ V + + +PD G+ + + V++ E++T PP +S LI M
Sbjct: 429 NGKRLVEPGYHEVYPYFSTTENFVPDVDEGEELSLSGVELEEKETQPPRRYGQSRLIETM 488
Query: 498 EKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
E G+GT ++ + + R YV R PT L + +V ++ +V M
Sbjct: 489 EDLGVGTKSTRHDILEKLYDRGYVESDPPR---PTRLAMAVVEAAEEYADRVVSEGM 542
>gi|448725243|ref|ZP_21707711.1| DNA topoisomerase I [Halococcus morrhuae DSM 1307]
gi|445799346|gb|EMA49726.1| DNA topoisomerase I [Halococcus morrhuae DSM 1307]
Length = 827
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 164/544 (30%), Positives = 260/544 (47%), Gaps = 42/544 (7%)
Query: 28 LQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSC---- 83
++R NG +V++W G + + GH++ DF +Y NW V+P+EL
Sbjct: 26 VERRNGV-NVYKWGG--------RRCVGLSGHVVENDFPPEYANWRDVEPVELLDADVVV 76
Query: 84 -PTEKREATPK-LKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPK 141
P E RE + L+L A +D +++ D D+EGE I E + VR S
Sbjct: 77 EPHESRENIVRTLRLLA------RDANGVIIATDYDREGELIGKEAADIVREV----SDA 126
Query: 142 TVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG 201
+ RARFS+ +++++ A NL + A + +ARQE+DL G A TR+ + + +
Sbjct: 127 PIKRARFSSFAEREVREAFHNLDDLDYDLAAAGEARQEIDLVWGAALTRFLSLTAKQRGN 186
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-----SR 256
D IS G Q+PTL V+R KI+ F PE YW L L + V + R
Sbjct: 187 DF----ISVGRVQSPTLKLIVDRERKIQKFDPETYWELFSDLLKDETTFEVQYFDREDGR 242
Query: 257 G--HIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPH 314
G ++D+S + A+ + TV DV T++ P NT + +R A S LG
Sbjct: 243 GTDRLWDESVAAEVYDALGETSAATVQDVSRRTRTDDPPHPFNTTQYIRAAGS-LGYSAQ 301
Query: 315 HAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPR 374
AM +AE LYT GY++YPRT+ T YP++ D+ +L + ++GD +L
Sbjct: 302 RAMSLAEELYTAGYITYPRTDNTVYPDDLDIEELLEGFTNHREFGDDAEALLEAEELSAT 361
Query: 375 KG-KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVAD 432
+G ++ DHPPI PT +L + ++L D +Y+ +VR F T+ + ++ +
Sbjct: 362 EGDEETTDHPPIHPTGELPSASELGDDEREIYELVVRRFFATVADPAKWEHLRVTAAIDE 421
Query: 433 EMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESE 492
K L+ PG+ V + +P+ G+ +PI+ V+ E++T PP +S
Sbjct: 422 HHLKANGKRLVEPGYHAVYPYFNTSENHVPELDEGEELPIEDVRSEEKETQPPRRRGQSR 481
Query: 493 LISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEP 552
LI ME GIGT A+ I + R Y+ R PT L +V ++ +V
Sbjct: 482 LIERMETMGIGTKATRHNTIEKLYDRGYIESDPPR---PTKLAEAVVEAAEQYADRVVSE 538
Query: 553 TMRS 556
M S
Sbjct: 539 EMTS 542
>gi|448714078|ref|ZP_21702095.1| DNA topoisomerase I [Halobiforma nitratireducens JCM 10879]
gi|445788962|gb|EMA39658.1| DNA topoisomerase I [Halobiforma nitratireducens JCM 10879]
Length = 827
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 160/536 (29%), Positives = 253/536 (47%), Gaps = 33/536 (6%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF +Y++W V+P+EL EK
Sbjct: 28 RENGV-NVYEWGGK--------RCVGLSGHVVGVDFPPEYSDWRDVEPVELIDADVEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L A+ + + D D+EGE I E E VR +N + R RFS
Sbjct: 77 TATKENIVATLRILARKANTVTIATDYDREGELIGKEAYEIVRE---VNETVPIRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ ++ A N + A + +ARQ +DL G A TR+ + G+ GD IS
Sbjct: 134 SITENEVTDAFENPDDIDFDLAAAGEARQIIDLIWGAALTRFLS-LSAGQLGD---DFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFF 269
G Q+PTL V+R +I+ F PE YW L L + + + D V+
Sbjct: 190 VGRVQSPTLKLIVDRKREIQAFDPEEYWELFADLQKDDTSFEAQYFYRDEDDNEAERVWE 249
Query: 270 KAVEKEKH--------VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
+A +E H TVVDV T++ P NT + +R A + LG AM IAE
Sbjct: 250 EATAEEVHDTLSSRDAATVVDVNRRTRTDAPPAPFNTTQFIRAAGA-LGYSAQRAMSIAE 308
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVG 380
LYT GY++YPRT+ T YP++ + +L + GD ++L +P +G ++
Sbjct: 309 DLYTAGYITYPRTDNTVYPDDLEPEELLDEFVGHSTLGDSAEQLLEADALEPTRGDEETT 368
Query: 381 DHPPITPT-KLATRT-QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
DHPPI PT ++ +R ++ D W +Y+ +VR F T+ V+ V D
Sbjct: 369 DHPPIHPTGEIPSRGGDVNDDEWEIYELVVRRFYATVAEAAVWEHLKVVAEVDDCRLKAN 428
Query: 439 AKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
K L+ PG+ V + + +PD G+ + + V++ ++T PP +S LI ME
Sbjct: 429 GKRLVEPGYHDVYPYFSTAENYVPDVDEGERLGLTDVELEAKETQPPRRYGQSRLIETME 488
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
G+GT ++ + + R Y+ R PT L + ++ + +V M
Sbjct: 489 DQGLGTKSTRHNTLEKLYDRGYIESDPPR---PTKLAMAVIDAAENYADRVVSEEM 541
>gi|254167954|ref|ZP_04874802.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
gi|289596012|ref|YP_003482708.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
gi|197622997|gb|EDY35564.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
gi|289533799|gb|ADD08146.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
Length = 747
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 154/503 (30%), Positives = 250/503 (49%), Gaps = 32/503 (6%)
Query: 58 GHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCD 117
GHI+ +D+ K+ W D L E + + + L AKD + L++ D D
Sbjct: 52 GHILHMDYPDKFKRWSLGDLQRLVD--EEPIKIIKEKGIANILRTLAKDADMLIIATDYD 109
Query: 118 KEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDAR 177
+EGE I E + N P V RA+FSA+T+++I+ A NLV N A + + R
Sbjct: 110 REGELIGVESLSIT----NFKGP--VKRAKFSALTEREIENAFSNLVDVNYNLASAAETR 163
Query: 178 QELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYW 237
Q++DL G + TR+ + + D +S G Q+PTL V+R +I F P PYW
Sbjct: 164 QKIDLAWGASLTRFISLASSRRGKDY----LSVGRVQSPTLALIVKREKEIENFVPTPYW 219
Query: 238 ----LLDLTLNLNGVAVSVT-WSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
L N +G+ +S W + + ++ V+ K V+D +
Sbjct: 220 NIKGLFFKRRNFSGMHISNPFWKEEEVME------VYEKVKDTKSAKVLDFVQEDRKIRP 273
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P NT E + A+ LG AM++AE LY GY+SYPRT+ T YP+ + ++L+
Sbjct: 274 PIPFNTTEFLSEATK-LGFSAAKAMRLAEELYMGGYISYPRTDNTVYPKTLSINSILKSL 332
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
E S + + ++ P +GK + DHPPI PT+ A L+GD ++Y+ +VR F
Sbjct: 333 EKS-KFKEEALKLQKERRRYPTRGKKESTDHPPIVPTRGAN---LEGDKGKIYELVVRRF 388
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIP 471
+ TL DL Y + K +V DE+F + K L++ G+ + + E IP + GD +
Sbjct: 389 MATLAQDLEYRESKVKLAVKDEIFEAKGKELVNEGWLYYYPYVRFEEEKIPILRIGDEVK 448
Query: 472 IQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVP 531
++ +++ ++T PP T+S LI MEK +GT ++ I + +R YV G + P
Sbjct: 449 VKKIEIERKETRPPARYTQSSLIREMEKLNLGTKSTRAEIIQKLFERGYV---RGNPIRP 505
Query: 532 TSLGIVLVHGYQKIDRELVEPTM 554
T LG L+ + + ++++P M
Sbjct: 506 TQLGKALIESLEGNNVDVIKPDM 528
>gi|448319100|ref|ZP_21508606.1| DNA topoisomerase I [Natronococcus jeotgali DSM 18795]
gi|445596714|gb|ELY50798.1| DNA topoisomerase I [Natronococcus jeotgali DSM 18795]
Length = 842
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 162/553 (29%), Positives = 261/553 (47%), Gaps = 50/553 (9%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF ++Y++W V+P+EL EK
Sbjct: 28 RENG-VNVYEWGGK--------RCVGLSGHVVGVDFPAEYSDWRDVEPVELIDAEVEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L A+ E + + D D+EGE I E + VR +++ + P + R RFS
Sbjct: 77 TATKEDIVATLRILARRAERVAIATDYDREGELIGKEAYDIVR-EVDADVP--IRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ ++K+A + + A + +ARQ +DL G A TR+ + G+ GD IS
Sbjct: 134 SITENEVKSAFEEPDELDFDLAAAGEARQIIDLIWGAALTRFLS-LSAGQLGD---DFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGH----------- 258
G Q+PTL V+R +I F PE YW L L + + S G
Sbjct: 190 VGRVQSPTLKLIVDREREIEAFDPETYWELFADLKKSEAQRASETSSGEQPRDDETTFEA 249
Query: 259 --------------IFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRV 304
+++++ + ++ + TVVDV T++ P NT + +R
Sbjct: 250 QYFYRDEDDNEAERVWEEAQADEVYETLSSRDAATVVDVNRRTRTDAPPAPFNTTQFIRA 309
Query: 305 ASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVRE 364
AS+ +G AM IAE LYT GY++YPRT+ T YP++ D +L + GD
Sbjct: 310 ASA-IGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLEAFVDHSELGDAADA 368
Query: 365 VLSNGISKPRKG-KDVGDHPPITPT-KLATRT-QLDGDAWRLYDYIVRHFIGTLCGDLVY 421
+L +P +G ++ DHPPI PT ++ TR +D D W LY+ +VR F T+ +
Sbjct: 369 LLEADEIRPTEGDEETTDHPPIHPTGEIPTRGGDVDDDEWELYELVVRRFYATVADPAEW 428
Query: 422 TQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERK 481
V D K L+ PG+ V + +PD + + + I+ V++ E++
Sbjct: 429 EHLKVVAEVDDARLKANGKRLVEPGYHDVYPYFNTSENYVPDVETDEKLAIEDVELEEKE 488
Query: 482 TTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHG 541
T PP +S LI ME G+GT ++ + + R Y+ R PT L + +V
Sbjct: 489 TQPPRRYGQSRLIETMEDLGLGTKSTRHNTLEKLYDRGYIESDPPR---PTRLAMAVVDA 545
Query: 542 YQKIDRELVEPTM 554
+ +V M
Sbjct: 546 AENYADRVVSEGM 558
>gi|73669895|ref|YP_305910.1| DNA topoisomerase I [Methanosarcina barkeri str. Fusaro]
gi|72397057|gb|AAZ71330.1| DNA topoisomerase I [Methanosarcina barkeri str. Fusaro]
Length = 771
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 156/505 (30%), Positives = 242/505 (47%), Gaps = 20/505 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP-KLKLPAFLANEAKDCEFLV 111
+ + GHI+G+DF +YNNW KV+ L + TP K+ L K +
Sbjct: 50 VVGLSGHIVGIDFPKEYNNWQKVESKTLINADII---TTPINRKIVTALKGLGKKASRVT 106
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
+ D D+EGE I E + ++ Q+N + P R R+SAIT K I+AA N + A
Sbjct: 107 IATDYDREGELIGVEALNIIK-QVNPDVP--FDRVRYSAITPKAIEAAFSNATDVDFNLA 163
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+ +RQ +DL G A TRY G+ G + +S G Q+PTL V+R + F
Sbjct: 164 DAGHSRQVIDLVWGAALTRY-ISLAAGRLGKM---FLSVGRVQSPTLSLIVDREKERNVF 219
Query: 232 KPEPYWLLDLTL-NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
P PYW + L N G S S DK FK + K+ + ++ K+
Sbjct: 220 VPTPYWEIYAELQNTEGKTFSAQHSTRRFLDKKEATKAFKKLGKKAELK--GIEKGKKTD 277
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
P NT + A+S +G+ P +AM+IAE LYT GY+SYPRT+ T YPE DL A +
Sbjct: 278 QPPAPFNTTGFISAANS-IGLSPANAMRIAEALYTNGYISYPRTDNTVYPETLDLRAQIE 336
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVR 409
+ P + ++ +L P +GK + DHPPI P LA + L D W++Y+ +VR
Sbjct: 337 IFKEGP-FKEYADALLEKAELIPTRGKKETTDHPPIFPASLAKESDLKEDEWKVYELVVR 395
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDL 469
F T G + K + E F L+ G+ ++A ++ P+ GD
Sbjct: 396 RFFATFAGPSEWETMRLKLDINGEEFKANGARLVEQGWRWYYPYNAPEDRLFPELHEGDS 455
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRL 529
+ + M +++T PP + LI++ME+ G+GT A+ I+ + R Y+ G +
Sbjct: 456 LKVIKKDMQDKETQPPGRYGQGRLINIMEELGLGTKATRHEIISKLYSRAYI---HGNPV 512
Query: 530 VPTSLGIVLVHGYQKIDRELVEPTM 554
PT+ ++ +K + +P M
Sbjct: 513 QPTNTSFAVMDTLEKYSPTITKPDM 537
>gi|322369955|ref|ZP_08044517.1| DNA topoisomerase [Haladaptatus paucihalophilus DX253]
gi|320550291|gb|EFW91943.1| DNA topoisomerase [Haladaptatus paucihalophilus DX253]
Length = 858
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 163/535 (30%), Positives = 254/535 (47%), Gaps = 32/535 (5%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V++W G + + GH++G+DF +YN+W V+P+EL EK+
Sbjct: 28 RQNG-VNVYKWGGK--------RCIGLSGHVVGVDFPPEYNDWRDVEPVELIDASVEKQP 78
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + L A+D + + D D+EGE I E E VR ++N + P + R RFS
Sbjct: 79 T--KENIVRTLRLLARDASRVTIATDYDREGELIGKEAWELVR-EVNEDVP--IQRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT ++ +A N + + A + +ARQ +DL G A TR F L IS
Sbjct: 134 SITKNEVSSAFENPDELDFDLAAAGEARQIIDLIWGAALTR----FLSLSARQLGNDFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW--------SRGHIFD 261
G Q+PTL V+R +I+ F PE YW + L + A + ++D
Sbjct: 190 VGRVQSPTLKLIVDREREIQAFDPEEYWEMFADLQKDDEAFESQYFYRDEDGNEAERVWD 249
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
+ T ++ +E TV V T++ T P NT + +R A S LG AM IAE
Sbjct: 250 EETAEKAYETLESATQATVDSVSRRTRTDTPPAPFNTTQFIRAAGS-LGYSAQRAMSIAE 308
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVG 380
LYT GY++YPRT+ T YP++ D +L + +GD +L +P +G ++
Sbjct: 309 DLYTAGYITYPRTDNTVYPDDLDPEELLDTFVGNYHFGDDADGLLEQDDIEPTEGDEETT 368
Query: 381 DHPPITPTK-LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA 439
DHPPI PT+ + T+ +L D W +Y+ +VR F T+ + +V D
Sbjct: 369 DHPPIHPTEDIPTKGELGDDEWDVYELVVRRFFATVAESAKWEHLKVVSTVDDLTLKANG 428
Query: 440 KYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
K LL G+ V + +P+ + G+ + I ++ +++T PP +S LI MEK
Sbjct: 429 KRLLKEGYHAVYPYFNTSENYVPNVEEGEDLSIIDTRIEDKQTQPPRRYGQSRLIEKMEK 488
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
GIGT ++ I + R Y+ R PT L +V + +V TM
Sbjct: 489 MGIGTKSTRHNTIQKLYDRGYLESDPPR---PTRLAQAVVKAAEDYADLVVSETM 540
>gi|116753908|ref|YP_843026.1| DNA topoisomerase I [Methanosaeta thermophila PT]
gi|116665359|gb|ABK14386.1| DNA topoisomerase I [Methanosaeta thermophila PT]
Length = 744
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 156/518 (30%), Positives = 254/518 (49%), Gaps = 38/518 (7%)
Query: 45 FGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVD-----PLELFSCPTEKREATPKLKLPAF 99
F D V+ ++ GHI+GLD+ YNNW KVD E+ S PT++R + KL
Sbjct: 37 FDDRVVIGLS---GHIVGLDYPECYNNWHKVDYRDLIRAEIVSRPTQERIVSALRKL--- 90
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
++ + + + D D+EGE I E + ++ +N R RFSAIT +I A
Sbjct: 91 ----GREADRVTIATDYDREGELIGVEALCILQE---VNPSIKADRVRFSAITKSEILRA 143
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
+ + A S +ARQ +DL G A TR F G L +S G Q+PTL
Sbjct: 144 FAQPEEVDFNLAASGEARQIIDLVWGAALTR----FISITSGRLGKEFLSVGRVQSPTLA 199
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
V+R +I +F+P+PYW + L + V S+ I+ + + ++
Sbjct: 200 LIVDREKEIESFQPKPYWEIYADLE---KGIRVRHSKSRIWTRDEVDRILNSLSD----- 251
Query: 280 VVDVQSSTKSKTK---PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTET 336
V V+S +K + + P +T + ASS +G +AM+IAE LYT GY+SYPRT+
Sbjct: 252 VARVRSISKGERRDRPPTPFDTTSFISAASS-IGFTAANAMRIAESLYTNGYISYPRTDN 310
Query: 337 TQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQL 396
T YP + DL ++L S P D + E++ I+ + + DHPPI PT +A + L
Sbjct: 311 TVYPPSIDLRSLLEMLSSGPFREDAL-ELMKGSITPTKGKRSTTDHPPIYPTSVADKDDL 369
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM 456
D W++Y+ +VR F TL G+ V+ F + DE+F +L G+ +S
Sbjct: 370 KEDQWKIYELVVRRFFATLSGECVWETTSISFDIGDEVFRANGSRILDLGWRRYYPYSRA 429
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
+ +P + G+ + + S +++ ++T PP + L+ LM++ G+GT ++ I+ +
Sbjct: 430 EENVLPPLREGEGLKVLSHEVLSKETQPPARFGQGRLVKLMDELGLGTKSTRHDIISKLY 489
Query: 517 QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
R Y+ G + PT +V Q+ + +P M
Sbjct: 490 ARAYI---HGNPIRPTKTAYAVVDTLQRHAPAITKPEM 524
>gi|435850997|ref|YP_007312583.1| DNA topoisomerase I, archaeal [Methanomethylovorans hollandica DSM
15978]
gi|433661627|gb|AGB49053.1| DNA topoisomerase I, archaeal [Methanomethylovorans hollandica DSM
15978]
Length = 753
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 159/510 (31%), Positives = 251/510 (49%), Gaps = 32/510 (6%)
Query: 56 VCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLD 115
+ GHI+ LDF YNNW KV+ EL + + ++ A L K+ + + D
Sbjct: 49 LSGHIVKLDFPRSYNNWQKVEAKELVDADV--ITVSTEARIVAALKKLGKEATRVTIATD 106
Query: 116 CDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVD 175
D+EGE I E ++ +R IN R +SAIT K+I A N+ + A +
Sbjct: 107 YDREGELIGVEALQIIRE---INPNVQFDRVHYSAITPKEIIDAFENVSNIDFNLADAGH 163
Query: 176 ARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEP 235
+RQ LDL G + TR+ G+ G L +S G Q+PTL V++ + F+ +P
Sbjct: 164 SRQVLDLVWGASLTRF-ISLAAGRLGKL---FLSVGRVQSPTLALIVDKEKEREAFEIKP 219
Query: 236 YWLL--------DLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
YW L D+ + V W + H DK N+ A+ KE V +ST
Sbjct: 220 YWELYAHLKDRKDIEFTVQHVNRRF-WEK-HEVDKLVSNLGKNAIIKE-------VVTST 270
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
K P NT E + ASS LG P AM+IAE LY QG++SYPRT+ T YP DL
Sbjct: 271 KKDKPPIPFNTTEFITAASS-LGFTPASAMRIAEALYIQGFISYPRTDNTVYPATLDLRE 329
Query: 348 VLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDY 406
++ + + + ++ ++L+ +P +GK + DHPPI P LA +++L+ W++Y+
Sbjct: 330 MI-EIFAKGTFKEYAEKLLAKETLEPTRGKKETTDHPPIYPASLAKKSELNEQEWKIYEM 388
Query: 407 IVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKP 466
+VR F T ++ AKF V+ E F+ L+ G+ ++A ++ +P K
Sbjct: 389 VVRRFFATFAEPAIWETIKAKFDVSSEEFSATGARLVEAGWRWYYPYNAPEDRLLPAMKE 448
Query: 467 GDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSG 526
GD + ++ +++ +++T PP + LI ME+ G+GT A+ I+ + R YV G
Sbjct: 449 GDELTVREIEVQDKETQPPGRYGQGRLIRTMEELGLGTKATRHEIISKLYSRAYV---HG 505
Query: 527 RRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
L PT +V +K + +P M S
Sbjct: 506 NPLQPTKTAYAVVEALEKYAPTISKPEMTS 535
>gi|389846116|ref|YP_006348355.1| DNA topoisomerase I [Haloferax mediterranei ATCC 33500]
gi|448616266|ref|ZP_21664976.1| DNA topoisomerase I [Haloferax mediterranei ATCC 33500]
gi|388243422|gb|AFK18368.1| DNA topoisomerase I [Haloferax mediterranei ATCC 33500]
gi|445750921|gb|EMA02358.1| DNA topoisomerase I [Haloferax mediterranei ATCC 33500]
Length = 855
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 166/542 (30%), Positives = 256/542 (47%), Gaps = 36/542 (6%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+RMNG +V++W G + + GH++G+DF +YN+W V+P+EL S P EK
Sbjct: 31 ERMNG-VNVYKWGGK--------RCIGLSGHVVGVDFPPEYNDWRDVEPVELISAPVEKH 81
Query: 89 EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF 148
+ + A L A+ + + D D+EGE I E E VR ++N V R RF
Sbjct: 82 PT--QENIVAALRRLARKAGNVTIATDYDREGELIGKEAYELVR---DVNEDVPVDRVRF 136
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
S+IT +++ A N + A + +ARQ +DL G A TR F L I
Sbjct: 137 SSITKREVTEAFENPDDLDFDLAAAGEARQIIDLVWGAALTR----FLSLSARQLGNDFI 192
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTWSRGHIFDKSTC- 265
S G Q PTL V+R +I F PE YW L LT + +G A S ++ D T
Sbjct: 193 SVGRVQGPTLKLIVDREREIEAFDPEDYWELFSKLTKDADGAAESFEAQYFYLDDDGTEA 252
Query: 266 -NVFFKAVEKEKHVTVVDVQSS--------TKSKTKPQALNTVELMRVASSGLGMGPHHA 316
++ + + + T++DV ++ T++ P NT + +R A S +G A
Sbjct: 253 ERIWDEEAAESAYETLLDVDAAEVTAVKRRTRTDKPPAPFNTTQFIRAAGS-IGYSAQRA 311
Query: 317 MQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG 376
M IAE LYT GY++YPRT+ T YP++ D +L E + + + +L +P +G
Sbjct: 312 MSIAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKEDAKSLLEQEEIEPTEG 371
Query: 377 -KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM 434
+ DHPPI PT +L + + L D W +Y+ +VR F T+ + V+ A
Sbjct: 372 DNETTDHPPIHPTGELPSASDLTEDEWDVYELVVRRFFATVAENAVWEHLRVVAEAAGLS 431
Query: 435 FTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
K LL PG+ V + +PD + G+ + + + ++T PP +S LI
Sbjct: 432 LKANGKRLLEPGYHEVYPYFNSTESFVPDVEEGEALVLSETHLDAKQTQPPRRYGQSRLI 491
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
ME+ GIGT A+ I + R Y+ R PT L +V + + +V M
Sbjct: 492 ETMEQMGIGTKATRHDVIQKLYDRGYIESDPPR---PTRLARAVVEASEDFAKLIVSEEM 548
Query: 555 RS 556
S
Sbjct: 549 TS 550
>gi|335438421|ref|ZP_08561165.1| DNA topoisomerase I [Halorhabdus tiamatea SARL4B]
gi|334892042|gb|EGM30286.1| DNA topoisomerase I [Halorhabdus tiamatea SARL4B]
Length = 844
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 162/540 (30%), Positives = 255/540 (47%), Gaps = 42/540 (7%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSC----- 83
+R NG +V+ W G ++ + GH++GLDF +Y+ W V+P+EL
Sbjct: 27 ERRNG-VNVYRWGGQ--------RVVGLSGHVVGLDFPPEYSEWRDVEPIELIDADVVTQ 77
Query: 84 PTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTV 143
PT + + A L + A+ + +V+ D D+EGE I E E +R + + V
Sbjct: 78 PT-------RENIVATLHSLARKADEVVIATDYDREGELIGKEAYELIREETD----APV 126
Query: 144 WRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL 203
R RFS+ITD++++ A N + + A + +ARQ +DL G A TR F L
Sbjct: 127 ERVRFSSITDREVQKAFENPDEIDFDLAAAGEARQIVDLIWGAALTR----FLSLSAKQL 182
Query: 204 DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-------SR 256
IS G Q+PTL V+R +I+ F PE YW + L +G +
Sbjct: 183 GNDFISVGRVQSPTLKLIVDREREIQAFDPEDYWEIVADLAKDGQGFEAQYFYDDDGSEA 242
Query: 257 GHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHA 316
++++S + + + TV +V+ T++ P NT + ASS LG A
Sbjct: 243 ERVWEESAAEAAYADLAESGTATVTEVRRRTRTDDPPAPFNTTAFISAASS-LGYSAQRA 301
Query: 317 MQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG 376
M +AE LYT GY++YPRT+ T YPE+ D +L E S ++GD +L+ +P +G
Sbjct: 302 MSLAEELYTDGYLTYPRTDNTVYPEDLDPAELLGAFEGSYEFGDDAESLLAQEEIEPTRG 361
Query: 377 KDVG-DHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM 434
+ DHPPI PT +L R ++ DAW +Y+ +VR F T+ + A
Sbjct: 362 DNESTDHPPIHPTGELPDRDEIGADAWEIYELVVRRFFATVAEPATWAHLRVVAEAAGRS 421
Query: 435 FTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
K LL G+ V +S+ +P + G+ + I V++ ++T PP +S LI
Sbjct: 422 LKANGKRLLEEGYHAVYPYSSAGETVVPAVEEGEELSIDDVELEAKQTQPPRRYGQSRLI 481
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
ME+ GIGT A+ + + R YV R PT L +V ++ +V M
Sbjct: 482 QHMEQMGIGTKATRHNIVEKLYDRGYVEDDPPR---PTKLAEAVVTAAEEYADHVVSEEM 538
>gi|300711966|ref|YP_003737780.1| DNA topoisomerase [Halalkalicoccus jeotgali B3]
gi|448295656|ref|ZP_21485720.1| DNA topoisomerase I [Halalkalicoccus jeotgali B3]
gi|299125649|gb|ADJ15988.1| DNA topoisomerase [Halalkalicoccus jeotgali B3]
gi|445583755|gb|ELY38084.1| DNA topoisomerase I [Halalkalicoccus jeotgali B3]
Length = 853
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 154/537 (28%), Positives = 251/537 (46%), Gaps = 32/537 (5%)
Query: 28 LQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEK 87
++R NG +V+ W G + + GH++ +DF S+Y++W V+P+EL EK
Sbjct: 26 VERQNG-VNVYRWGGK--------RCIGLSGHVVAVDFPSEYSDWRDVEPVELIGAAVEK 76
Query: 88 REATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRAR 147
+ L A+D + + D D+EGE I E E VR ++N + R R
Sbjct: 77 TPTQENIVRTVRLL--ARDANRVTIATDYDREGELIGKEAYEIVR---DVNDGAEIDRVR 131
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD ++ +A + + + A + +ARQ +DL G A TR+ + + GD
Sbjct: 132 FSSITDGEVHSAFDDPDEIDFDLAAAGEARQIIDLVWGAALTRFLS-LSARQLGD---DF 187
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW--------SRGHI 259
IS G QTPTL V+R +I F PE YW + L + + +
Sbjct: 188 ISVGRVQTPTLKLIVDREREIEAFDPEAYWEIFANLVKGEESFDAQYFYRDEDGNEAERV 247
Query: 260 FDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQI 319
+D ++ + + V V T++ P NT + +R ASS +G AM I
Sbjct: 248 WDGQRAEAVYETLREASEARVESVSRRTRTDAPPAPFNTTQFIRAASS-IGYSAKRAMSI 306
Query: 320 AERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KD 378
AE LYT GY++YPRT+ T YPE+ D +L + +G+ +L P +G ++
Sbjct: 307 AEDLYTAGYITYPRTDNTVYPEDLDPRELLDAFTGNRTFGEDAETLLEREEITPTEGDEE 366
Query: 379 VGDHPPITPTK-LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTM 437
DHPPI PT+ L T+ +L W +Y+ +VR F T+ + V +
Sbjct: 367 TTDHPPIHPTEELPTKGELSDAEWEVYELVVRRFFATVADSARWEHLKVVLEVGEHRLKA 426
Query: 438 EAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLM 497
K L+ PG+ V + + +PD + G+ + + +++ +++T PP +S LI M
Sbjct: 427 NGKRLVEPGYHAVYPYFSTNENVVPDVEEGESLALTEIRIEDKETQPPRRYGQSRLIETM 486
Query: 498 EKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
E+ GIGT ++ I + R Y+ S R PT L +V ++ +V M
Sbjct: 487 EEMGIGTKSTRHNTIEKLYDRGYIENDSPR---PTKLATAVVEAGEEYADRVVSEAM 540
>gi|294892870|ref|XP_002774271.1| prokaryotic dna topoisomerase, putative [Perkinsus marinus ATCC
50983]
gi|239879497|gb|EER06087.1| prokaryotic dna topoisomerase, putative [Perkinsus marinus ATCC
50983]
Length = 956
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 127/305 (41%), Positives = 182/305 (59%), Gaps = 9/305 (2%)
Query: 49 VLFKMTSVCGHIMGLDFTSKYNN-WDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDC 107
V+ +T+V GH+MGLDF +Y WD VDP L++ P K A+ + L A+ C
Sbjct: 278 VMMVVTAVRGHLMGLDFEQEYRGRWDTVDPETLYNAPLVKSVASDMGPVAGNLRRLARTC 337
Query: 108 EFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPN 167
++LVLWLDCD+EGE I +EV+E R N+ V+RA FSA+T D+ A NL +PN
Sbjct: 338 DWLVLWLDCDREGEAIAYEVIEIAREA---NARLNVYRANFSALTHADLTRACLNLARPN 394
Query: 168 IFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDK 227
A +VDARQE+DLRIG +FTR+ T ++ + L+ ++SYGPCQ PTLGF V+R
Sbjct: 395 PHLAAAVDARQEIDLRIGASFTRFLTLRYKRRLPLLEG-ILSYGPCQFPTLGFVVQRWLL 453
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFF----KAVEKEKHVTVVDV 283
R F EP+W + T++ V V + W R +FD + + + V + V V
Sbjct: 454 QRNFIREPFWTIKCTVSGPMVEVKLLWGRHRLFDHLATTLLYDRCLQHVRESGGGVVTHV 513
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
+ KS+ +P L+TVE ++ASS L + AM+IAE LY +G +SYPRTET ++ N
Sbjct: 514 SHNPKSRWRPLPLSTVEFAKLASSKLRIDSRQAMRIAEELYNRGIISYPRTETDRFNPNI 573
Query: 344 DLVAV 348
DL+ +
Sbjct: 574 DLLEL 578
>gi|52549025|gb|AAU82874.1| DNA topoisomerase I [uncultured archaeon GZfos21B5]
Length = 681
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 150/493 (30%), Positives = 238/493 (48%), Gaps = 19/493 (3%)
Query: 56 VCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK--LPAFLANEAKDCEFLVLW 113
+ GH+ LDF YNNW KVDP +L T LK + L AK +++ +
Sbjct: 45 LSGHVFRLDFPDSYNNWSKVDPYKLIDAKI----VTVALKKDIVKTLGQIAKKADYITVA 100
Query: 114 LDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARS 173
D D+EGE I E + +++ IN V R R+SAIT+KDIK + + + A S
Sbjct: 101 TDYDREGELIGVEALNSIK---KINPELKVDRMRYSAITEKDIKDSFAARSEVDYNLAAS 157
Query: 174 VDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKP 233
+ RQ +DL G + TR+ + + GD S G Q+PTL VE+ +I F P
Sbjct: 158 AEVRQIIDLVWGASLTRFVS-LSANRLGD---GFFSVGRVQSPTLALLVEKEKEIAKFVP 213
Query: 234 EPYWLLDLTLNL-NGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
YW L L NG VT ++K V +E K V +++ + +
Sbjct: 214 RKYWELHAKLKTENGEIFDVTHKTAKFWEKDEAEVAKARIEAAKEGFVRTLKTKLRVEKP 273
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P +T +R A+S + P M IAE LY G +SY RT+ T YP+ DL A+++
Sbjct: 274 PTPFDTTTFIR-AASAISYTPKRLMAIAEGLYLGGLISYHRTDNTTYPDTLDLKALVQMF 332
Query: 353 ESSPDWGDHVREVLSNGISKPRKGKD-VGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
+ ++G H + +L+ KP GK DHPPI P T+ +L+ D W++Y+ +VR F
Sbjct: 333 QKHKEFGKHAKLLLTKKELKPTAGKKKTTDHPPIHPVAETTKDKLEKDEWKVYELVVRRF 392
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIP 471
+ TL + + DE T + + L GF + + + IP K + +
Sbjct: 393 LATLSDAAKWEDTNVTAEIGDEPLTAKGRLLKEQGFLAIYPYQKKEELVIPQLKEDEKVD 452
Query: 472 IQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVP 531
++ +++VE++T PP+ ++++ LI M+ G+GT ++ I + R YV G P
Sbjct: 453 LEHIELVEKETKPPNRISQAGLIKKMDDLGLGTKSTRHEIIGKLYDRTYV---QGNPAKP 509
Query: 532 TSLGIVLVHGYQK 544
T + L+ +K
Sbjct: 510 TEKAVALIDSLEK 522
>gi|123431270|ref|XP_001308100.1| DNA topoisomerase family protein [Trichomonas vaginalis G3]
gi|121889762|gb|EAX95170.1| DNA topoisomerase family protein [Trichomonas vaginalis G3]
Length = 523
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/414 (31%), Positives = 210/414 (50%), Gaps = 13/414 (3%)
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FSA++ +DI A N N EA + R+E+DLR+G F+ +QT + + +
Sbjct: 15 FSALSYEDIIKAFNNPSNINRNEAMAAKIRREIDLRLGGVFSHFQTLKMKKYIEEKREEV 74
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFK--PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTC 265
+SYGPCQ PTLGF V K + + PE W +D+ + ++ + W+R H+F K +C
Sbjct: 75 LSYGPCQLPTLGFVVHSFLKAQKYNNYPEKCWKIDVHIKKGDKSLQIKWNRKHLFCKVSC 134
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
F ++ V D+Q + TKPQ L T + L + AM I E LY
Sbjct: 135 FGQFASMFDFPSAIVTDIQITESEVTKPQPLTTATHLINCCKYLKLKASRAMAITENLYN 194
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD---- 381
G++SYPRTET +P+NF+ V +L + G EVL N + KP KG +
Sbjct: 195 NGFISYPRTETDSFPDNFNFVDILTNLTIDREVGGMAYEVL-NSLQKPLKGNCTDNAHTP 253
Query: 382 -HPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
+P + P++ ++ + D ++ I RHF L + + T K +F V E+F ++K
Sbjct: 254 IYPIVCPSEFNSKEEKD-----VFYLICRHFFAVLSSNCLVTTKTTEFDVGGELFHYKSK 308
Query: 441 YLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKH 500
+ GF + +K +S DF + I ++S+KMV P+ L+E ELI M K
Sbjct: 309 TIKQIGFMKYFDYFKIKEKSDIDFSMNENIEVESIKMVNTSYKKPELLSEYELIDKMNKK 368
Query: 501 GIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
IGTDA+ HI+ + +R Y+ + +++PT++G LV Y+K+ P +
Sbjct: 369 KIGTDATFHQHISKLVERKYIKIDGNGKILPTAVGAALVAAYEKLRIGFARPQL 422
>gi|257784895|ref|YP_003180112.1| DNA topoisomerase type IA central domain-containing protein
[Atopobium parvulum DSM 20469]
gi|257473402|gb|ACV51521.1| DNA topoisomerase type IA central domain protein [Atopobium
parvulum DSM 20469]
Length = 837
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/459 (30%), Positives = 229/459 (49%), Gaps = 15/459 (3%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L N AK E +++ D D+EGE I + + V +++N V+RAR+SA T +I+ A
Sbjct: 137 LKNLAKKAESVIIGTDFDREGELIGSDALAQV---LSVNPNLAVFRARYSAFTKTEIETA 193
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
NLV + A + ++RQ +DL G TRY T ++G L + S G QTPTL
Sbjct: 194 FNNLVDLDYNLAAAGESRQYIDLIWGAVLTRYLT---TARFGGL-GNTRSAGRVQTPTLA 249
Query: 220 FCVERHDKIRTFKPEPYWLLDLTL---NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEK 276
VER + FKPE YW++ + + + +D++ + + V+ +
Sbjct: 250 LVVERERERLAFKPEDYWVISGVASPEDDDEATFKMVHQTARFWDQAEADTVYDVVKDQT 309
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTET 336
TVV+++S ++ + P NT L + A++ G+ P M++AE LY G +SYPR +
Sbjct: 310 QATVVEIESRSRKQQPPAPFNTTSL-QAAAAAEGISPARTMRLAESLYMDGLISYPRVDN 368
Query: 337 TQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQ 395
T YP + DL +R + P + +++L +GK + DHPPI PT A
Sbjct: 369 TVYPSSLDLKDCVRTLSAVPQYAPTCKKLLGQPKLHATRGKQESTDHPPIYPTAAANPDS 428
Query: 396 LDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSA 455
L AW+LY+ I R F+ TL G + VA + F L PGF + +
Sbjct: 429 LQPAAWKLYNLIARRFLATLMGPATMSGTKITLDVAGQPFVANGTVLAEPGFREIYPFGL 488
Query: 456 MKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNI 515
K++ IPD G+++ I+S+ + ++T PP ++ +LI MEK G+GT ++ I+ +
Sbjct: 489 KKDDQIPDVGEGEIVSIKSLSLDAKQTEPPARYSQGKLIQEMEKRGLGTKSTRASIIDTL 548
Query: 516 CQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
QR Y+ + P+ LG+ +V + + P M
Sbjct: 549 YQRKYL---KNDPVEPSQLGMAIVDALSQFAPHITSPDM 584
>gi|448359807|ref|ZP_21548456.1| DNA topoisomerase I [Natrialba chahannaoensis JCM 10990]
gi|445641874|gb|ELY94946.1| DNA topoisomerase I [Natrialba chahannaoensis JCM 10990]
Length = 826
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 157/535 (29%), Positives = 250/535 (46%), Gaps = 32/535 (5%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF S+Y++W V+P+EL EK
Sbjct: 28 RENG-VNVYEWGGK--------RCVGLSGHVVGVDFPSEYSDWRDVEPVELIDASIEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L ++ + + D D+EGE I E + VR ++ + R RFS
Sbjct: 77 TATKENIVATLRILSRKATRVTIATDYDREGELIGKEAYDIVRE---VDEEVPIHRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ +++ A + + A + +ARQ +DL G A TR F G L IS
Sbjct: 134 SITENEVQDAFDEPDELDFDLAAAGEARQIIDLVWGAALTR----FLSLSAGQLGNDFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW--------SRGHIFD 261
G Q+PTL V+R +I F PE YW L + A + +++
Sbjct: 190 VGRVQSPTLKLMVDREREIEAFDPEDYWELVADVAKGEEAFEAQYFYRDEDGNEAERVWE 249
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
++ F+ + + TVVDV T++ + P NT + +R AS+ LG AM IAE
Sbjct: 250 EAVAEDVFETLSQRDTATVVDVNRRTRTDSPPAPFNTTQFIRAASA-LGYSAKRAMSIAE 308
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVG 380
LYT GY++YPRT+ T YP++ D +L P G+ +L +P +G ++
Sbjct: 309 DLYTAGYITYPRTDNTVYPDDLDPEELLDDFVGHPTLGESAESLLEADEIEPTEGDEETT 368
Query: 381 DHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA 439
DHPPI PT ++ +R + D W +++ +VR F T+ ++ VA
Sbjct: 369 DHPPIHPTGEIPSRGDVSDDEWEVFELVVRRFYATVAEAAIWEHLKVVAEVAAHRLKANG 428
Query: 440 KYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
K L G+ V + + +PD G+ I I V++ +++T PP +S LI ME
Sbjct: 429 KRLDKAGYHDVYPYFSTTENYVPDVSEGEEITITDVELEDKQTQPPRRYGQSRLIETMED 488
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
GIGT ++ I + R Y+ R PT L + +V + +V M
Sbjct: 489 MGIGTKSTRHETIQKLYDRGYIESDPPR---PTKLAMAVVEAAENYADRVVSEDM 540
>gi|88602302|ref|YP_502480.1| DNA topoisomerase [Methanospirillum hungatei JF-1]
gi|88187764|gb|ABD40761.1| DNA topoisomerase I [Methanospirillum hungatei JF-1]
Length = 931
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 156/513 (30%), Positives = 248/513 (48%), Gaps = 23/513 (4%)
Query: 45 FGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVD--PLELFSCPTEKREATPKLKLPAFLAN 102
FGD + + GH++ +DF Y NW + P L T KR P + +
Sbjct: 38 FGDKISIGLR---GHVVEVDFVEGYTNWRSQERPPRSLIDAETIKRPTEPAI--VKLIHK 92
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWN 162
AK + + D D EGE I E E VR +N + RARFSAIT ++I A
Sbjct: 93 IAKKANRVTIATDFDTEGELIGKEAYELVRA---VNPKVPIDRARFSAITKEEINRAFSE 149
Query: 163 LVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
+ A + +ARQ +DL G + TR+ + K G +++S G Q+PTL V
Sbjct: 150 PSDLDFDLAAAGEARQVVDLIWGASLTRFIS--LAAKRGG--GNILSVGRVQSPTLAMIV 205
Query: 223 ERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVD 282
+R +I +F PEPYW + LT +G ++ + G DK + + + + V +
Sbjct: 206 DREKEIESFIPEPYWEISLTTEKDGQSIIARHAEGRFTDKKLADAAYAGTKDP--LVVTE 263
Query: 283 VQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPEN 342
V+ + P +T + + VA++ +G +AM++AE LY G++SYPRT+ T YP +
Sbjct: 264 VKEGKRVDRAPTPFDTTQFI-VAAARIGYSAANAMRVAEELYMNGFISYPRTDNTIYPPS 322
Query: 343 FDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKLATRTQLDGDAW 401
+L +L E + + V V N +KP +GK DHPPI PT +AT QL G+ W
Sbjct: 323 LNLDNILTTLEKT-KFARDVAWVRKNRRTKPTEGKKSSTDHPPIHPTGVATEEQL-GENW 380
Query: 402 RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI 461
+LY+ +VR F+ TL D + + + L G+ V +S K+ +
Sbjct: 381 KLYELVVRRFLATLSPDAEWATMRIGMDATGQNYVATGSRLTEAGWRTVYPYSEAKDSIL 440
Query: 462 PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
P K G+ + IQ + + E++T PP ++S+LI +ME+ G+GT ++ I + R Y+
Sbjct: 441 PVVKKGEKLKIQDLNLEEKQTQPPPRYSQSKLIQVMEELGLGTKSTRHEVIQKLISRKYI 500
Query: 522 TVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
G L PT +G + + + P M
Sbjct: 501 ---EGNPLRPTLVGKAVTESLEAHASTITRPDM 530
>gi|254168173|ref|ZP_04875020.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
gi|197622939|gb|EDY35507.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
Length = 747
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 153/503 (30%), Positives = 250/503 (49%), Gaps = 32/503 (6%)
Query: 58 GHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCD 117
GHI+ +D+ ++ W D L E + + + L AKD + L++ D D
Sbjct: 52 GHILHMDYPDEFKRWSLGDLQRLVD--EEPIKIIKEKGIANILRTLAKDADMLIIATDYD 109
Query: 118 KEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDAR 177
+EGE I E + N P V RA+FSA+T+++I+ A NLV N A + + R
Sbjct: 110 REGELIGVESLSIT----NFKGP--VKRAKFSALTEREIENAFSNLVDVNYNLASAAETR 163
Query: 178 QELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYW 237
Q++DL G + TR+ + + D +S G Q+PTL V+R +I F P PYW
Sbjct: 164 QKIDLAWGASLTRFISLASSRRGKDY----LSVGRVQSPTLALIVKREKEIENFVPTPYW 219
Query: 238 ----LLDLTLNLNGVAVSVT-WSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
L N +G+ +S W + ++ V+ K V+D +
Sbjct: 220 NIKGLFFKRRNFSGMHISNPFWKEEEAME------VYEKVKDTKSAKVLDFIQEDRKIRP 273
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P NT E + A+ LG AM++AE LY GY+SYPRT+ T YP+ + ++L+
Sbjct: 274 PIPFNTTEFLSEATK-LGFSAARAMRLAEELYMGGYISYPRTDNTVYPKTLSINSILKSL 332
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
E S + + ++ P +GK + DHPPI PT+ A L+GD ++Y+ +VR F
Sbjct: 333 EKS-KFKEEALKLQKERRRYPTRGKKESTDHPPIVPTRGAN---LEGDKGKIYELVVRRF 388
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIP 471
+ TL DL Y + K +V DE+F + K L++ G+ ++ + E IP + GD +
Sbjct: 389 MATLAPDLEYRESKVKLAVKDEIFEAKGKELVNEGWLYYYPYARFEEEKIPILRIGDEVK 448
Query: 472 IQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVP 531
++ +++ ++T PP T+S LI MEK +GT ++ I + +R YV G + P
Sbjct: 449 VKKIEIERKETRPPARYTQSSLIREMEKLNLGTKSTRAEIIQKLFERGYV---RGNPIRP 505
Query: 532 TSLGIVLVHGYQKIDRELVEPTM 554
T LG L+ + + ++++P M
Sbjct: 506 TQLGKALIESLEGNNVDVIKPDM 528
>gi|219851924|ref|YP_002466356.1| DNA topoisomerase type IA central domain-containing protein
[Methanosphaerula palustris E1-9c]
gi|219546183|gb|ACL16633.1| DNA topoisomerase type IA central domain protein [Methanosphaerula
palustris E1-9c]
Length = 938
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 159/516 (30%), Positives = 255/516 (49%), Gaps = 28/516 (5%)
Query: 45 FGDLVLFKMTSVCGHIMGLDFTSKYNNW-DKVD-PLELFSCPTEKREATPKLKLPAFLAN 102
F D V+ + GH++ +DF Y NW +V+ P L S T K A K+ +
Sbjct: 38 FNDTVVVGLR---GHVVEVDFEPGYTNWRSEVNTPRSLISARTIK--APTDKKIVTLIQK 92
Query: 103 EAKDCEFLVLWLDCDKEGENI---CFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
K + + + D D EGE I +++++AV+ + ++ R+RFSAIT+++I+ A
Sbjct: 93 LTKKADHVTIATDFDTEGELIGKETYDLVKAVKPDVRVD------RSRFSAITEEEIQTA 146
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
+ + A + +ARQ +DL G + TR+ + G +++S G Q+PTL
Sbjct: 147 FAAPAELDFALAAAGEARQLIDLIWGASLTRFIS--LAAHRGG--KNILSVGRVQSPTLA 202
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
V+R +I F PEPYW+L + N +G V + D + +A VT
Sbjct: 203 MMVDREKEIEAFVPEPYWVLTVDSNKDGEPVLARHTTARFTDVAIAEEAKEATRAPLMVT 262
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQY 339
+V+ +K P +T + VA+ LG +AM+IAE LY GY+SYPRT+ T Y
Sbjct: 263 --EVKEGSKVDRAPTPFDTTGFI-VAAGRLGFSAANAMRIAEDLYMHGYISYPRTDNTIY 319
Query: 340 PENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDG 398
P + DL VL+ + + + V V++N P +GK DHPPI P+ ATR +L
Sbjct: 320 PRSLDLNGVLKTLQKT-ELSSAVIWVMANRRPVPTQGKKSTTDHPPIHPSGAATRAELGD 378
Query: 399 DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKN 458
+ W++Y+ +VR F+ TL D + F+ +E +T LL G+ V +S
Sbjct: 379 ERWKIYELVVRRFLATLSPDARWMTMKVLFTAGNEPYTTTGATLLEAGWRTVYPYSDATE 438
Query: 459 ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQR 518
+P F GD +PI+ V + ++T PP T+S LI ME+ G+GT ++ I + R
Sbjct: 439 HPLPRFAVGDSLPIEQVNLDRKETQPPPRYTQSRLIQQMEELGLGTKSTRHEVIGKLVGR 498
Query: 519 NYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
Y+ G L PT +G ++ + + P M
Sbjct: 499 KYI---EGNPLRPTLVGRAVIESLEDHAAAITRPDM 531
>gi|257053792|ref|YP_003131625.1| DNA topoisomerase I [Halorhabdus utahensis DSM 12940]
gi|256692555|gb|ACV12892.1| DNA topoisomerase I [Halorhabdus utahensis DSM 12940]
Length = 844
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 161/536 (30%), Positives = 255/536 (47%), Gaps = 34/536 (6%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+R NG +V++W G ++ + GH++G+DF +Y W V+P EL
Sbjct: 27 ERRNG-VNVYKWGGQ--------RVVGLSGHVVGVDFPPEYAEWRDVEPAELIDADVV-- 75
Query: 89 EATP-KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRAR 147
TP + + A L + A+ + +V+ D D+EGE I E E +R + + V R R
Sbjct: 76 -TTPTRENIVATLRSLARKADEVVIATDYDREGELIGKEAYELIREETD----APVERVR 130
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+IT+++++ A N + + A + +ARQ +DL G A TR F L
Sbjct: 131 FSSITEREVQKAFENPDEIDFDLAAAGEARQIVDLIWGAALTR----FLSLSAKQLGNDF 186
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYW--LLDLTLNLNGVAVSVTWSRG-----HIF 260
IS G Q+PTL V+R +I F P+ YW L DL + G + ++
Sbjct: 187 ISVGRVQSPTLKLIVDREREIEAFDPDDYWEILADLAKDGQGFEAQYFYDDDGSEAERVW 246
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D++ + + + TV +V+ T++ P NT + ASS LG AM +A
Sbjct: 247 DEAAAEAAYADLSESGTATVTEVRRRTRTDDPPAPFNTTAFISAASS-LGYSAQRAMSLA 305
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DV 379
E LYT GY++YPRT+ T YP++ D +L E S ++GD +L +P +G+ +
Sbjct: 306 EELYTDGYLTYPRTDNTVYPDDLDPEELLGAFEGSYEFGDDAASLLDQDEIEPTRGETES 365
Query: 380 GDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
DHPPI PT +L R ++ DAW +Y+ +VR F T+ + A
Sbjct: 366 TDHPPIHPTGELPDRDEVGADAWEIYELVVRRFFATVAEPATWAHLRVVAEAAGRSLKAN 425
Query: 439 AKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
K LL G+ V +S+ +P+ GD + I +V++ ++T PP +S LI ME
Sbjct: 426 GKRLLEEGYHAVYPYSSAGETFVPEVSEGDKLSIDAVELEAKQTQPPRRYGQSRLIQHME 485
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
+ GIGT A+ + + R YV R PT L +V ++ +V M
Sbjct: 486 EMGIGTKATRHNIVEKLYDRGYVEDDPPR---PTKLAEAVVSAAEEYADHVVSEEM 538
>gi|374629454|ref|ZP_09701839.1| DNA topoisomerase I [Methanoplanus limicola DSM 2279]
gi|373907567|gb|EHQ35671.1| DNA topoisomerase I [Methanoplanus limicola DSM 2279]
Length = 935
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 157/509 (30%), Positives = 247/509 (48%), Gaps = 38/509 (7%)
Query: 58 GHIMGLDFTSKYNNW--DKVDPLELFSC-----PTEKREATPKLKLPAFLANEAKDCEFL 110
GH++ +DF Y NW + P L PTEK K+ A + +K + +
Sbjct: 48 GHVVEVDFEEGYKNWRSETHTPRTLIDAGIIRKPTEK-------KIVALIKKLSKKADLV 100
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
+ D D+EGE I E E VR N V RARFSAIT ++I AA N + +
Sbjct: 101 TIATDYDREGELIGKEAYEIVREA---NKKVPVNRARFSAITKQEISAAFDNPAEIDFDL 157
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
A + +ARQE+DL G + TR+ + K G +++S G Q+PTL V+R +I
Sbjct: 158 AAAGEARQEIDLVWGASLTRFIS--IAAKRGG--KNILSVGRVQSPTLAMIVDREKEIGE 213
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
F P PYW+L + + + G K ++ V V + + +++
Sbjct: 214 FVPVPYWMLSIISEKDKEQFEARHTHGRFDLKEEAESALSGTKEP--VEVTEKKEGSRTD 271
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
P +T + VA+S LG+ +AM++AE LY GY+SYPRT+ T YP++ D+ +L
Sbjct: 272 KAPAPFDTTGYI-VAASRLGLSASNAMRVAEDLYMNGYISYPRTDNTVYPDSLDIKGILN 330
Query: 351 QQESS----PDWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKLATRTQLDGDAWRLYD 405
+ + S +W V++N P KGK DHPPI PT A LD +W++Y+
Sbjct: 331 EIKKSFRRDTEW------VIANIRDTPTKGKKTSTDHPPIHPTGAAKPADLDEKSWKVYE 384
Query: 406 YIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFK 465
IVR F+ TL D + + E +T + L + G+ V +S K + +PD
Sbjct: 385 LIVRRFLATLSPDARWKTLKYLLNAGGEEYTSTGQRLEYEGYRMVYPYSQAKEQVLPDLS 444
Query: 466 PGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS 525
G+ +P+ + E++T PP ++S+LI ME+ G+GT ++ I + R YV
Sbjct: 445 EGEKLPLVDTVLEEKETQPPPRYSQSKLIQQMEELGLGTKSTRHEVIGKLISRRYV---E 501
Query: 526 GRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
L PT +G+ + +K + +P M
Sbjct: 502 DNPLKPTQVGMAVTESLEKHATLITKPDM 530
>gi|435845938|ref|YP_007308188.1| DNA topoisomerase I [Natronococcus occultus SP4]
gi|433672206|gb|AGB36398.1| DNA topoisomerase I [Natronococcus occultus SP4]
Length = 842
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 160/536 (29%), Positives = 253/536 (47%), Gaps = 33/536 (6%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF S+Y++W V+P+EL EK
Sbjct: 28 RENG-VNVYEWGGK--------RCVGLSGHVVGVDFPSEYSDWRDVEPVELIDADIEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L A+ E + + D D+EGE I E + VR +++ + P + R RFS
Sbjct: 77 TATKENIVATLRILARRAERVAIATDYDREGELIGKEAYDIVR-EVDEDVP--IRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ ++K A + + A + +ARQ +DL G A TR F G L IS
Sbjct: 134 SITENEVKNAFDEPDELDFDLAAAGEARQIIDLIWGAALTR----FLSLSAGQLGNDFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW--------SRGHIFD 261
G Q+PTL V+R +I+ F PE YW L L + ++
Sbjct: 190 VGRVQSPTLKLIVDREREIQAFDPETYWELFADLRQAETTFEAQYFYRDEDDNEAERVWK 249
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
++ + ++ + TVVDV T++ P NT + +R AS+ +G AM IAE
Sbjct: 250 EARADEVYETLSGRNAATVVDVNRRTRTDAPPAPFNTTQFIRAASA-IGYSAKRAMSIAE 308
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVL-SNGISKPRKGKDVG 380
LYT GY++YPRT+ T YP++ D +L + GD +L ++ I ++
Sbjct: 309 DLYTAGYITYPRTDNTVYPDDLDPEELLEEFVGHSTLGDAADSLLEADEIRATEGDEETT 368
Query: 381 DHPPITPT-KLATRT-QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
DHPPI PT ++ TR + D W +Y+ +VR F T+ + V D
Sbjct: 369 DHPPIHPTGEIPTRGGDVSDDEWEIYELVVRRFYATVADPAKWEHLKVVAEVDDVRLKAN 428
Query: 439 AKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
K L+ PG+ V + +PD + G+ + I+ V++ E++T PP +S LI ME
Sbjct: 429 GKRLVEPGYHDVYPYFNTTENYVPDVETGEELSIEDVELEEKETQPPRRYGQSRLIETME 488
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
G+GT ++ I + R Y+ R PT L + +V + +V M
Sbjct: 489 DLGLGTKSTRHNTIEKLYDRGYIESDPPR---PTKLAMAVVDAAESYADRVVSEEM 541
>gi|448305271|ref|ZP_21495203.1| DNA topoisomerase I [Natronorubrum sulfidifaciens JCM 14089]
gi|445589118|gb|ELY43354.1| DNA topoisomerase I [Natronorubrum sulfidifaciens JCM 14089]
Length = 828
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 162/537 (30%), Positives = 256/537 (47%), Gaps = 34/537 (6%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF S+Y++W V+P EL EK
Sbjct: 28 RENGV-NVYEWGGK--------RCVGLSGHVVGVDFPSEYSDWRDVEPAELIDADVEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L A+ + + D D+EGE I E E VR ++N + R RFS
Sbjct: 77 TATKENIVATLRILARKATQVTIATDYDREGELIGKEAYEIVR---DVNEDVPIQRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ ++K+A + + A + +ARQ +DL G + TR F G L IS
Sbjct: 134 SITENEVKSAFDEPDELDFDLAAAGEARQIIDLIWGASLTR----FLSLSAGQLGNDFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTW--------SRGHI 259
G Q+PTL V+R +I F PE YW L DL + + A + +
Sbjct: 190 VGRVQSPTLKLIVDREREIEAFDPESYWELFADLEKDDDTDAFEAQYFYRDEDDNEAERV 249
Query: 260 FDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQI 319
++++ + ++ + TVVDV T++ T P NT + +R AS+ +G AM I
Sbjct: 250 WEEAVADEVYETLSSRDSATVVDVTRRTRTDTPPTPFNTTQFIRAASA-IGYTAKRAMSI 308
Query: 320 AERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KD 378
AE LYT GY++YPRT+ T YP++ D +L G+ +L P +G ++
Sbjct: 309 AEELYTAGYITYPRTDNTVYPDDLDPEDLLDDFVGHSTLGESAESLLEADEISPTEGDEE 368
Query: 379 VGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTM 437
DHPPI PT ++ TR + D W +++ +VR F T+ V+ VAD
Sbjct: 369 TTDHPPIHPTGEIPTRGDVSDDEWEIFELVVRRFFATVADAAVWEHLKVVAEVADYRLKA 428
Query: 438 EAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLM 497
K L+ PG+ V + + +PD G+ + + V++ E++T PP +S LI M
Sbjct: 429 NGKRLVEPGYHDVYPYFSTTENFVPDVDEGEKLSLSDVELEEKETQPPRRYGQSRLIETM 488
Query: 498 EKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
E G+GT ++ + + R YV R PT L + +V ++ +V M
Sbjct: 489 EDLGVGTKSTRHDILEKLYDRGYVESDPPR---PTRLAMAVVEAAEEYADRVVSEGM 542
>gi|288931982|ref|YP_003436042.1| DNA topoisomerase I [Ferroglobus placidus DSM 10642]
gi|288894230|gb|ADC65767.1| DNA topoisomerase I [Ferroglobus placidus DSM 10642]
Length = 653
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 155/498 (31%), Positives = 240/498 (48%), Gaps = 25/498 (5%)
Query: 58 GHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCD 117
GH++ DF +YN+W +V+ L + + + + L AK + + + D D
Sbjct: 46 GHVVEYDFPPEYNDWKRVELKSLLNARIVR--VVKEKSIVRLLEELAKKADRVTIATDYD 103
Query: 118 KEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDAR 177
+EGE I E ++ ++ +N + R +FSAIT ++I+ A + K N+ A++ + R
Sbjct: 104 REGELIGLEAVQIIKR---VNPDVRIDRVKFSAITPEEIRKAFSSPGKINVNLAKAAETR 160
Query: 178 QELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYW 237
Q +DL G TR G L +S G Q+PTL V+R +IR FKPEPYW
Sbjct: 161 QIIDLLWGAVLTR----LISLSSGRLGRDFLSAGRVQSPTLRIIVDREKEIREFKPEPYW 216
Query: 238 LLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALN 297
+ GV + DK + EK V + + + KP N
Sbjct: 217 EITAKFE-RGVEAKIP---RRFKDKEEAKRVY---EKIGDGVVKSFEEVERVEKKPIPFN 269
Query: 298 TVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPD 357
T E ++ AS M P AM IAE LY GY+SYPRT+ T YP++ +L +++ S +
Sbjct: 270 TTEFLKEASKF--MPPDKAMAIAENLYINGYISYPRTDNTVYPQSLNLKKLVKMFLGS-E 326
Query: 358 WGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLC 416
+ R L + KP +GK + DHPPI PT LA R +L D W +Y+ IVR F+ TL
Sbjct: 327 FDKEARIALED--MKPSRGKKETKDHPPIHPTALAERKELSKDEWIIYELIVRRFLATLA 384
Query: 417 GDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVK 476
D V+ + A+ E K L+ G+ + +S ++ +P + G+ + + S K
Sbjct: 385 PDAVWMVRKAEIISGGEKLVASGKELIKSGWRAIYIYSKAEDVFLPKLRVGERLKLLSKK 444
Query: 477 MVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGI 536
+ E+KT PP + S LI LMEK +GT ++ I + R YV G + PT
Sbjct: 445 LHEKKTKPPSRYSTSSLIKLMEKLNLGTKSTRHEIIRKLYSRGYV---RGNPVKPTETAF 501
Query: 537 VLVHGYQKIDRELVEPTM 554
+V +K+ + P M
Sbjct: 502 SVVEALKKLYEPITLPDM 519
>gi|257065031|ref|YP_003144703.1| topoisomerase IA [Slackia heliotrinireducens DSM 20476]
gi|256792684|gb|ACV23354.1| topoisomerase IA [Slackia heliotrinireducens DSM 20476]
Length = 837
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/456 (30%), Positives = 222/456 (48%), Gaps = 12/456 (2%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L N AK + +++ D D+EGE I + + +R ++N +P V RAR+SA+ +I A
Sbjct: 137 LKNLAKKADDIIIATDFDREGELIGSDALSCIR-EVNTTAP--VSRARYSALIKPEITHA 193
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
NLV+ ++ A + ++RQE+DL G TRY T YG++ +S G QTPTL
Sbjct: 194 FENLVELDMNLAHAGESRQEIDLIWGAVLTRYLTIVKFAGYGNVRSS----GRVQTPTLA 249
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
VER + F PE YW++ + T G + + AV + T
Sbjct: 250 LIVERERERMAFVPEDYWVIKAKFSDGIEPFEATHKEGRFKTQEAADAVMNAVNGAQFGT 309
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQY 339
V ++ ++ + P NT LM A++ G+ P M++AE LY GY SYPR + T Y
Sbjct: 310 VSGIEKRKRTVSAPTPFNTTGLM-AAAAAEGLSPARTMRLAESLYMAGYTSYPRVDNTVY 368
Query: 340 PENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDG 398
P +FDL A+++ P + + R++L+ G P +GK + DHPPI P + A+ +L
Sbjct: 369 PSSFDLPAMVKTLSEVPAYEPYCRQLLAKGTLTPTRGKQESTDHPPIVPMQAASPDKLQP 428
Query: 399 DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKN 458
W+LY+ I R F+ TL V V DE F ++ PGF + + A K+
Sbjct: 429 AEWKLYNLIARRFLATLSDAAVIEGTKVSVDVNDETFITRGDVVVKPGFRAIYPYGAKKD 488
Query: 459 ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQR 518
+P G + +++T PP ++ +LI MEK G+GT A+ I+ +
Sbjct: 489 TILPQLNEGQQVDFLGATCEQKQTEPPARYSQGKLIQEMEKLGLGTKATRHSIIDRLYNV 548
Query: 519 NYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
Y+ + P+ LGI + + ++ P M
Sbjct: 549 KYI---QNDPIEPSQLGIAVCDALGRFAPQITSPGM 581
>gi|448328025|ref|ZP_21517341.1| DNA topoisomerase I [Natrinema versiforme JCM 10478]
gi|445616620|gb|ELY70240.1| DNA topoisomerase I [Natrinema versiforme JCM 10478]
Length = 826
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 157/535 (29%), Positives = 258/535 (48%), Gaps = 32/535 (5%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF S+Y++W V+P+EL EK
Sbjct: 28 RENGV-NVYEWGGK--------RCVGLSGHVVGVDFPSEYSDWRDVEPVELIDASVEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L ++ + + D D+EGE I E + VR N++ + R RFS
Sbjct: 77 TATKENIVATLRLLSRRANRVTIATDYDREGELIGKEAYDIVR---NVDEDVPIRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ ++++A + + A + +ARQ +DL G A TRY G L IS
Sbjct: 134 SITENEVQSAFDEPDELDFDLAAAGEARQIIDLVWGAALTRY----LSLSAGQLGNDFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW--------SRGHIFD 261
G Q+PTL V+R +I+ F PE YW L L + ++ + I++
Sbjct: 190 VGRVQSPTLKLIVDREREIQAFDPEDYWELFADLEKDEMSFGTQYFYRDEDDNEAERIWE 249
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
++T + ++ + TVVDV T++ T P+ NT + +R A + +G AM IAE
Sbjct: 250 EATADEVYETLADRDAATVVDVNRRTRTDTPPEPFNTTQFIRAAGA-IGYSAKRAMSIAE 308
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVG 380
LYT GY++YPRT+ T YP++ D +L + P G+ +L P +G ++
Sbjct: 309 DLYTAGYITYPRTDNTVYPDDLDPEDLLDEFVGHPSLGESAESLLEADDIVPTEGDEETT 368
Query: 381 DHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA 439
DHPPI PT ++ TR + D W +++ +VR F T+ + V D
Sbjct: 369 DHPPIHPTGEIPTRGDVSDDEWEVFELVVRRFYATVADAAEWEHLKVVAEVEDHRLKSNG 428
Query: 440 KYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
K L+ PG+ V + + +PD G+ + + V++ +++T PP +S LI ME+
Sbjct: 429 KRLVEPGYHDVYPYFSTTENFVPDVDEGEELGLSGVELEDKQTQPPRRYGQSRLIETMEE 488
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
GIGT ++ + + R Y+ R PT L + +V + +V M
Sbjct: 489 MGIGTKSTRHNTLEKLYDRGYIESDPPR---PTKLAMAVVDAAENYADRIVSEEM 540
>gi|448685228|ref|ZP_21693220.1| DNA topoisomerase I [Haloarcula japonica DSM 6131]
gi|445781839|gb|EMA32690.1| DNA topoisomerase I [Haloarcula japonica DSM 6131]
Length = 827
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 147/512 (28%), Positives = 246/512 (48%), Gaps = 23/512 (4%)
Query: 52 KMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLV 111
++ + GH++G+DF +YN+W V+P+EL K E T + + L A++ +
Sbjct: 41 RVVGLSGHVVGVDFPEEYNDWRDVEPVELIDADVTK-EPTQE-NIVTTLKQLAREADEAT 98
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
+ D D+EGE I E E +R + + V R RFS+IT+++++ A N + A
Sbjct: 99 IATDYDREGELIGKEAYELIREETD----APVDRVRFSSITEREVRDAFANPDDIDFDLA 154
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+ +ARQ +DL G A TR+ + + GD IS G Q+PTL V+R +I+ F
Sbjct: 155 AAGEARQIIDLVWGAALTRFLS-LSARQLGD---DFISVGRVQSPTLKLIVDREREIQAF 210
Query: 232 KPEPYWLLDLTLNLNGVAVSVTW-------SRGHIFDKSTCNVFFKAVEKEKHVTVVDVQ 284
PE YW + L NG + ++ + + + + TV V+
Sbjct: 211 DPEDYWEIFADLQKNGSGFEAQYFYDDDGKEAERVWVEDDADEAYADLTSVDAATVTSVR 270
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD 344
T++ + P NT + ASS LG AM IAE LYT GY++YPRT+ T YP++ +
Sbjct: 271 RRTRTDSPPTPFNTTAFISAASS-LGYSAQQAMSIAEELYTTGYITYPRTDNTVYPDDLE 329
Query: 345 LVAVLRQQESSPDWGDHVREVLS-NGISKPRKGKDVGDHPPITPT-KLATRTQLDGDAWR 402
A+L + + +G+ ++L + I+ ++ DHPPI PT ++ + L D W
Sbjct: 330 EDALLDEFVGAGHFGEDAEKLLEQDDITATEGDEETTDHPPIHPTGEIPPKADLSDDEWE 389
Query: 403 LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP 462
+Y+ +VR F T+ + K L+ PG+ V +S+ +P
Sbjct: 390 IYELVVRRFFATVAEAATWEHLRVVADAGGRSLKANGKRLVEPGYHEVYPYSSASENHVP 449
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT 522
D + G+ + I V+M +++T PP +S LI ME G+GT ++ I + R Y+
Sbjct: 450 DVEEGEELAISEVRMEDKQTQPPRRYGQSRLIQTMEDKGLGTKSTRHNSIEKLYDRGYIE 509
Query: 523 VTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
R PT+L + +V ++ +V M
Sbjct: 510 GDPPR---PTTLAMAVVEAAEEFADHVVSDEM 538
>gi|91772172|ref|YP_564864.1| DNA topoisomerase I [Methanococcoides burtonii DSM 6242]
gi|91711187|gb|ABE51114.1| DNA topoisomerase [Methanococcoides burtonii DSM 6242]
Length = 743
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 163/550 (29%), Positives = 267/550 (48%), Gaps = 31/550 (5%)
Query: 1 MHLRVKKLVPASEIKLARPSLISLLTPLQ----RMNGACSVHEWVGPLFGDLVLFKMTSV 56
MHL + +E +A + +L P + R++G E+ P D ++ + +
Sbjct: 1 MHLII------AEKHIAAKRIAKILAPKEPKQVRVSG-MDTFEYKNPDAEDRII--VMGL 51
Query: 57 CGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDC 116
GHI+ LDF YNNW K+D EL E +K+ A L K+ + + D
Sbjct: 52 SGHIVQLDFPKAYNNWQKIDANELIDA--EVITTPTHVKIVAALRKLGKEATHVTIATDY 109
Query: 117 DKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDA 176
D+EGE I E + +R +N R +SAIT +I+ A N + A + +
Sbjct: 110 DREGELIGVEALNIIR---KVNPDVEFDRVFYSAITKTEIEGAFANPASIDFDLADAGHS 166
Query: 177 RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPY 236
RQ +DL G + TRY + G+ G L +S G Q+PTL V++ + + F +PY
Sbjct: 167 RQVIDLVWGASLTRYLS-ISAGRLGKL---FLSVGRVQSPTLALIVDKEKERQAFVSKPY 222
Query: 237 WLLDLTLNLNGVA-VSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQA 295
W ++ TL N A V+V ++K + + + + V+ VD T P
Sbjct: 223 WEVNATLKDNDDALVNVQHKNSKFWEKEEADAVMEVIGDKASVSSVDSSKKTDKV--PTP 280
Query: 296 LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESS 355
NT E + ASS +G +AM+IAE LYT G++SYPRT+ T YP + DL A +
Sbjct: 281 FNTTEFIGAASS-IGFTASNAMRIAESLYTNGFISYPRTDNTVYPASIDLRAQIEIFSKG 339
Query: 356 PDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGT 414
P + ++ +++L+ P +GK + DHPPI P LA +++L+ W+LY+ +VR F T
Sbjct: 340 P-FREYAQKLLAKDELVPTRGKKETTDHPPIYPASLAKKSELNEQDWKLYELVVRRFFAT 398
Query: 415 LCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQS 474
+ + +F ++ E F L+H G+ ++A ++ +P GD++ +
Sbjct: 399 FADEAEWETMKVRFDISGEEFKANGARLVHQGWRWYYPYNAPQDRLLPALSEGDILDVTG 458
Query: 475 VKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSL 534
+M++++T PP + LI LME G+GT A+ I+ + R YV G L PT
Sbjct: 459 KEMLDKETQPPGRYGQGRLIKLMEDLGLGTKATRHEIISKLYSRAYV---HGNPLQPTKT 515
Query: 535 GIVLVHGYQK 544
++ +K
Sbjct: 516 SFAVIEALEK 525
>gi|326434142|gb|EGD79712.1| DNA topoisomerase III [Salpingoeca sp. ATCC 50818]
Length = 1137
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 153/524 (29%), Positives = 239/524 (45%), Gaps = 71/524 (13%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTE------KREA 90
++E+ + G + ++T+VCGH+MG DF + W P LF P +
Sbjct: 37 LYEFQTHINGQMWDIRLTAVCGHLMGWDFDDAHRKWRSSPPESLFDAPLQMTSHGGGDNG 96
Query: 91 TPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSA 150
K+ L + C+ +++ D D+EGENI FE++EA R N R RFSA
Sbjct: 97 DNNKKILGVLQRHVRGCQMVLIATDSDREGENIGFEIIEACR---KTNKRFIAKRMRFSA 153
Query: 151 ITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISY 210
+T +I ++ NL P + R D R+
Sbjct: 154 VTPAEINNSLRNLTPP---DQRLSDYRER------------------------------- 179
Query: 211 GPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFK 270
ER F PE +W + + V WSR ++D+ C+VF +
Sbjct: 180 ------------ER------FIPEDFWRIIAKHRCEEMTVDFNWSRYRVYDEDVCSVFLE 221
Query: 271 AVEKEKHVTVVDVQSS-----TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
E K TV +V + K +P L T EL ++AS M P A+ AE LY
Sbjct: 222 LCEDAKIATVTNVTGEFEMCRPRDKWRPVGLTTTELQKIASRRFRMAPTEALSTAESLYQ 281
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLS-NGISKPRKGKDVGD-HP 383
+G +SYPRTET + ++ +L ++ + +WG + ++ NG PR G++ + HP
Sbjct: 282 KGLISYPRTETDMFDKSINLTRLVENLTAHTEWGAFAQTLVPPNGAPSPRNGRNTDEAHP 341
Query: 384 PITPTKLATRTQLDGDAWR-LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYL 442
PI PTK L D R +Y+ + RHF+ + + + + A E F + +
Sbjct: 342 PIHPTKNIAPAALASDKERKIYELVCRHFLACVSRNAKGRETTVTITAAGETFVAKGLAI 401
Query: 443 LHPGFTGVM-TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHG 501
G+ V + + K + IPD+ G +M +T P L+E++L++LM K+
Sbjct: 402 HDRGYLEVYHPFDSWKGKMIPDYSVGQQFE-PDFQMQSGETVAPKLLSEADLLTLMAKYE 460
Query: 502 IGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKI 545
IGTDA++ HI I QR+YV +T R LVPT+LGI LV+GY +
Sbjct: 461 IGTDATMAEHIRTIQQRHYVELTPQRELVPTTLGIALVNGYDAM 504
>gi|448355410|ref|ZP_21544162.1| DNA topoisomerase I [Natrialba hulunbeirensis JCM 10989]
gi|445635563|gb|ELY88731.1| DNA topoisomerase I [Natrialba hulunbeirensis JCM 10989]
Length = 843
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 160/552 (28%), Positives = 253/552 (45%), Gaps = 49/552 (8%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF S+Y++W V+P+EL EK
Sbjct: 28 RENG-VNVYEWGGK--------RCVGLSGHVVGVDFPSEYSDWRDVEPVELIDASIEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L ++ + + D D+EGE I E + VR ++ + R RFS
Sbjct: 77 TATKENIVATLRILSRKATRVTIATDYDREGELIGKEAYDIVRE---VDEEVPIRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ +++ A + + A + +ARQ +DL G A TR F G L IS
Sbjct: 134 SITENEVQDAFAEPDELDFDLAAAGEARQIIDLVWGAALTR----FLSLSAGQLGNDFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTWSRGH--------- 258
G Q+PTL V+R +I F PE YW L D+ S T S
Sbjct: 190 VGRVQSPTLKLMVDREREIEAFDPEDYWELVADVAKGSEAQRASETSSGDEPRESEAFEA 249
Query: 259 --------------IFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRV 304
+++++ F+ + + TVVDV T++ + P NT + +R
Sbjct: 250 QYFYRDEDGNEAERVWEEAVAEDVFETLSQRDTATVVDVNRRTRTDSPPAPFNTTQFIRA 309
Query: 305 ASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVRE 364
AS+ LG AM IAE LYT GY++YPRT+ T YP++ D +L P G+
Sbjct: 310 ASA-LGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLDDFVGHPTLGESAES 368
Query: 365 VLSNGISKPRKG-KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYT 422
+L +P +G ++ DHPPI PT ++ +R + D W +++ +VR F T+ ++
Sbjct: 369 LLEADEIEPTEGDEETTDHPPIHPTGEIPSRGDVSDDEWEVFELVVRRFYATVAEAAIWE 428
Query: 423 QKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKT 482
VAD K L G+ V + + +PD G+ + I V++ +++T
Sbjct: 429 HLKVVAEVADHRLKANGKRLDKAGYHDVYPYFSTTENYVPDVSEGEELTITDVELEDKQT 488
Query: 483 TPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGY 542
PP +S LI ME GIGT ++ I + R Y+ R PT L + +V
Sbjct: 489 QPPRRYGQSRLIETMEDMGIGTKSTRHETIQKLYDRGYIESDPPR---PTKLAMAVVEAA 545
Query: 543 QKIDRELVEPTM 554
+ +V M
Sbjct: 546 ENYADRVVSEDM 557
>gi|448728862|ref|ZP_21711183.1| DNA topoisomerase I [Halococcus saccharolyticus DSM 5350]
gi|445796237|gb|EMA46748.1| DNA topoisomerase I [Halococcus saccharolyticus DSM 5350]
Length = 861
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 157/541 (29%), Positives = 250/541 (46%), Gaps = 41/541 (7%)
Query: 28 LQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSC---- 83
+ R NG +V++W G + + GH++ DF +Y+NW V+P+EL
Sbjct: 26 VDRRNG-VNVYKWGG--------RRCVGLSGHVVENDFPPEYSNWRDVEPVELIDAEVVV 76
Query: 84 -PTEKREATPK-LKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPK 141
P E RE + L+L A +D + +++ D D+EGE I E + VR +
Sbjct: 77 EPHESRENIVRTLRLLA------RDADGVIIATDYDREGELIGKEAHDIVRDVTDA---- 126
Query: 142 TVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG 201
+ RARFS+ + +++ A +L + A + +ARQE+DL G A TR F
Sbjct: 127 PIRRARFSSFAEPEVREAFDDLDDLDFELAAAGEARQEIDLVWGAALTR----FLSLSAK 182
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW------- 254
+ + IS G Q+PTL V+R +I F P+ YW L L + +
Sbjct: 183 QMGSDFISVGRVQSPTLKLIVDREREIEAFDPDDYWELFCDLAKDEATFEAQYFYDDDGS 242
Query: 255 SRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPH 314
++D + A+ V +V+ T++ P NT + +R ASS LG
Sbjct: 243 EAERVWDGDVAEAVYDALRGASTAAVEEVRRRTRTDDPPTPFNTTQYIRAASS-LGYSAQ 301
Query: 315 HAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPR 374
AM +AE LYT GY++YPRT+ T YP++ D+ +L + ++GD +L N +
Sbjct: 302 RAMSLAEELYTAGYITYPRTDNTVYPDDLDVAELLSEFTDHSEFGDDADALLKNEPTPTE 361
Query: 375 KGKDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADE 433
++ DHPPI PT +L + T+L D +Y+ +VR F T+ + D
Sbjct: 362 GDEETTDHPPIHPTGELPSTTELGDDERAVYELVVRRFFATVADPAEWEHLRVTAVAGDH 421
Query: 434 MFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESEL 493
K LL PG+ V + +PD + GD +P+ V+ ++T PP +S L
Sbjct: 422 QLKANGKRLLEPGYHAVYPYVDSTENHVPDVEEGDELPVSDVRSEAKETQPPRRRGQSRL 481
Query: 494 ISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPT 553
I ME GIGT A+ I + R Y+ R PT+L +V ++ ++V
Sbjct: 482 IETMESMGIGTKATRHNTIEKLYDRGYIENDPPR---PTTLAKAVVDAGERFAEQVVSEE 538
Query: 554 M 554
M
Sbjct: 539 M 539
>gi|433592040|ref|YP_007281536.1| topoisomerase IA [Natrinema pellirubrum DSM 15624]
gi|448334373|ref|ZP_21523551.1| DNA topoisomerase I [Natrinema pellirubrum DSM 15624]
gi|433306820|gb|AGB32632.1| topoisomerase IA [Natrinema pellirubrum DSM 15624]
gi|445620259|gb|ELY73765.1| DNA topoisomerase I [Natrinema pellirubrum DSM 15624]
Length = 843
Score = 228 bits (580), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 158/552 (28%), Positives = 257/552 (46%), Gaps = 49/552 (8%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF S+Y++W V+P+EL EK
Sbjct: 28 RENG-VNVYEWGGK--------RCVGLSGHVVGVDFPSEYSDWRDVEPVELIDADVEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L + E + + D D+EGE I E + VR +++ + P + R RFS
Sbjct: 77 TATKENIVATLRLLTRRAERVTIATDYDREGELIGKEAYDIVR-EVDEDVP--IRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ +++ A + A + +ARQ +DL G A TR+ + G+ GD IS
Sbjct: 134 SITENEVQNAFDEPDDLDFDLAAAGEARQIIDLIWGAALTRFLS-LSAGQLGD---DFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGH----------- 258
G Q+PTL V+R +I F PE YW L L + + S G
Sbjct: 190 VGRVQSPTLKLIVDREREIEAFDPEDYWELFADLRKSEAQRASETSSGEEPRDDDTSFES 249
Query: 259 --------------IFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRV 304
++++ T + ++ + + TVVDV T++ T P+ NT + +R
Sbjct: 250 QYFYRDEDGNEAERVWEEETADEVYETLADRESATVVDVNRRTRTDTPPEPFNTTQFIRA 309
Query: 305 ASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVRE 364
A + +G AM IAE LYT GY++YPRT+ T YP++ D +L + GD
Sbjct: 310 AGA-IGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLDEFTGHSTLGDSAES 368
Query: 365 VLSNGISKPRKG-KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYT 422
+L P +G ++ DHPPI PT ++ +R + D W +++ +VR F T+ +
Sbjct: 369 LLEADEITPTEGDEETTDHPPIHPTGEIPSRGDVSDDEWEIFELVVRRFYATVADAAEWE 428
Query: 423 QKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKT 482
V D K L+ PG+ V + + +PD G+ + + V++ ++T
Sbjct: 429 HLKVVADVDDYRLKANGKRLVEPGYHDVYPYFSTTENFVPDVDEGEELALSDVELEAKQT 488
Query: 483 TPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGY 542
PP +S LI ME GIGT ++ + + R Y+ R PT L + +V
Sbjct: 489 QPPRRYGQSRLIETMEGMGIGTKSTRHNTLEKLYDRGYIESDPPR---PTKLAMAVVDAA 545
Query: 543 QKIDRELVEPTM 554
+ +V M
Sbjct: 546 ENYADRVVSEEM 557
>gi|448363205|ref|ZP_21551808.1| DNA topoisomerase I [Natrialba asiatica DSM 12278]
gi|445647174|gb|ELZ00154.1| DNA topoisomerase I [Natrialba asiatica DSM 12278]
Length = 826
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 161/538 (29%), Positives = 251/538 (46%), Gaps = 38/538 (7%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF S+Y++W V+P+EL EK
Sbjct: 28 RENGV-NVYEWGGT--------RCVGLSGHVVGVDFPSEYSDWRDVEPVELIDASVEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L ++ + + D D+EGE I E + V H+++ P + R RFS
Sbjct: 77 TATKENIVATLRILSRKATRVTIATDYDREGELIGKEAYDIV-HEVDDEVP--IRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ ++ A + + A + +ARQ +DL G A TR F G L IS
Sbjct: 134 SITETEVTDAFDEPDELDFDLAAAGEARQIIDLVWGAALTR----FLSLSAGQLGNDFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKS------ 263
G Q+PTL V+R +I+ F P+ YW L + A + +D+
Sbjct: 190 VGRVQSPTLRLIVDREREIQAFDPKDYWELVADVAKGEEAFEAQY---FYYDEDDNEAER 246
Query: 264 -----TCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQ 318
F+ + + + TVVDV T++ + P NT + +R A S LG AM
Sbjct: 247 VWEEAAAEEAFETLSQRETATVVDVNRRTRTDSPPAPFNTTQFIRAAGS-LGYSAKRAMS 305
Query: 319 IAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-K 377
IAE LYT GY++YPRT+ T YP++ D +L P G+ +L P +G +
Sbjct: 306 IAEDLYTAGYITYPRTDNTVYPDDLDPEELLDDFVGHPSLGESAESLLDADDIVPTEGDE 365
Query: 378 DVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFT 436
+ DHPPI PT ++ R + D W +++ +VR F T+ D V+ AD
Sbjct: 366 ETTDHPPIHPTGEIPARGDVSDDEWDVFELVVRRFYATVAADAVWEHLKVVAEAADHRLK 425
Query: 437 MEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISL 496
K L+ PG+ V + + +PD + G+ I I V++ ++T PP +S LI
Sbjct: 426 ANGKRLVEPGYHDVYPYFSTTENYVPDVEEGEDISITDVELEAKQTQPPRRYGQSRLIET 485
Query: 497 MEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
ME GIGT ++ I + R Y+ R PT L + +V + +V M
Sbjct: 486 MEDMGIGTKSTRHETIQKLYDRGYIESDPPR---PTKLAMAVVEATENYADRVVSEDM 540
>gi|268325082|emb|CBH38670.1| DNA topoisomerase I [uncultured archaeon]
Length = 681
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 148/493 (30%), Positives = 236/493 (47%), Gaps = 19/493 (3%)
Query: 56 VCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK--LPAFLANEAKDCEFLVLW 113
+ GH+ LDF YNNW KVDP +L T LK + L AK +++ +
Sbjct: 45 LSGHVFRLDFPDSYNNWSKVDPYKLIDAKI----VTVALKKDIVKTLGQIAKKADYITVA 100
Query: 114 LDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARS 173
D D+EGE I E + ++ IN V R R+SAIT+KDIK + + + A S
Sbjct: 101 TDYDREGELIGVEALNNIK---KINPELKVDRMRYSAITEKDIKDSFAARSEVDYNLAAS 157
Query: 174 VDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKP 233
+ RQ +DL G + TR+ + + GD S G Q+PTL VE+ +I F P
Sbjct: 158 AEVRQIIDLVWGASLTRFIS-LSANRLGD---GFFSVGRVQSPTLALLVEKEKEIAKFVP 213
Query: 234 EPYWLLDLTLNL-NGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
YW L L NG VT ++K V +E K + +++ + +
Sbjct: 214 RKYWELHAKLKTGNGEIFDVTHKTAKFWEKDEAEVAKARIEAAKSGFIRTLKTKLRVEKP 273
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P +T +R A+S + P M IAE LY G +SY RT+ T YP+ DL +++
Sbjct: 274 PTPFDTTTFIR-AASAISYTPKRLMAIAEGLYLGGLISYHRTDNTTYPDTLDLKTLVQMF 332
Query: 353 ESSPDWGDHVREVLSNGISKPRKGKD-VGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
+ ++G H + +L+ KP GK DHPPI P T+ +L+ D W++Y+ +VR F
Sbjct: 333 QKHKEFGKHAKLLLTKKELKPTAGKKKTTDHPPIHPVAETTKDKLEKDEWKVYELVVRRF 392
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIP 471
+ TL + + DE T + + L GF + + + IP K + +
Sbjct: 393 LATLSDAAKWEDTNVTAEIGDEPLTAKGRLLKEQGFLAIYPYQKKEELVIPQLKEDEKVD 452
Query: 472 IQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVP 531
++ +++VE++T PP+ ++++ LI M+ G+GT ++ I + R YV G P
Sbjct: 453 LEHIELVEKETKPPNRISQAGLIKKMDDLGLGTKSTRHEIIGKLYDRTYV---QGNPAKP 509
Query: 532 TSLGIVLVHGYQK 544
T + L+ +K
Sbjct: 510 TEKAVALIDSLEK 522
>gi|448630882|ref|ZP_21673337.1| DNA topoisomerase I [Haloarcula vallismortis ATCC 29715]
gi|445755256|gb|EMA06646.1| DNA topoisomerase I [Haloarcula vallismortis ATCC 29715]
Length = 827
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 155/534 (29%), Positives = 253/534 (47%), Gaps = 32/534 (5%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+ W GD ++ + GH++G+DF +YN+W V+P+EL K E
Sbjct: 28 RQNG-VNVYRW-----GDT---RVVGLSGHVVGVDFPKEYNDWRDVEPVELIDADVTK-E 77
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
T + + A L A++ + + D D+EGE I E E +R + + V R RFS
Sbjct: 78 PTQE-NIVATLKQLAREADEATIATDYDREGELIGKEAYELIREETD----APVDRVRFS 132
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+++++ A N + A + +ARQ +DL G A TR+ + + GD IS
Sbjct: 133 SITEREVRDAFANPDDIDFDLAAAGEARQIIDLVWGAALTRFLS-LSARQLGD---DFIS 188
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-------SRGHIFDK 262
G Q+PTL V+R +I+ F PE YW + L NG + ++ +
Sbjct: 189 VGRVQSPTLKLIVDREREIQAFDPEDYWEIFADLQKNGSGFEAQYFYDDDGKEAERVWVE 248
Query: 263 STCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAER 322
+ + + TV V+ T++ + P NT + ASS LG AM IAE
Sbjct: 249 DDADDAYADLTSVDAATVTSVRRRTRTDSPPTPFNTTAFISAASS-LGYSAQQAMSIAEE 307
Query: 323 LYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNG-ISKPRKGKDVGD 381
LYT GY++YPRT+ T YP++ + A+L + + +G+ +L I+ ++ D
Sbjct: 308 LYTTGYITYPRTDNTVYPDDLEEDALLDEFVGAGHFGEDAEALLEQADITATEGDEETTD 367
Query: 382 HPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
HPPI PT ++ + L D W +Y+ +VR F T+ + K
Sbjct: 368 HPPIHPTGEIPPKVDLSDDEWEIYELVVRRFFATVAEAATWEHLRVVADAGGRSLKANGK 427
Query: 441 YLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKH 500
L+ PG+ V +S+ +PD + G+ + I V+M ++T PP +S LI ME
Sbjct: 428 RLVEPGYHEVYPYSSASENHVPDVEEGEELAISEVRMEAKQTQPPRRYGQSRLIQTMEDK 487
Query: 501 GIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
G+GT ++ I + R Y+ R PT+L + +V ++ +V M
Sbjct: 488 GLGTKSTRHNSIEKLYDRGYIEGDPPR---PTTLAMAVVEAAEEFADHVVSDEM 538
>gi|345006355|ref|YP_004809208.1| DNA topoisomerase [halophilic archaeon DL31]
gi|344321981|gb|AEN06835.1| DNA topoisomerase [halophilic archaeon DL31]
Length = 871
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 169/552 (30%), Positives = 267/552 (48%), Gaps = 56/552 (10%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+R+NG +V+ W G ++ + GH++G+DF +Y++W V+P EL P + +
Sbjct: 27 ERVNG-VNVYGWGGK--------RVIGLSGHVVGVDFPPEYDDWRNVEPHELIDAPVDTQ 77
Query: 89 EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF 148
+ + A L AKD +++ D D+EGE I E + VR ++N V RARF
Sbjct: 78 --ATQEGIVAALRRLAKDANRVIIATDYDREGELIGKEAFDLVR---DVNETIPVERARF 132
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
S+ITD+++ A N + + A + +ARQ +DL G A TR+ + G+ GD I
Sbjct: 133 SSITDREVHNAFDNTGEIDFNLAAAGEARQIVDLVWGAALTRFLS-LSAGQLGD---DFI 188
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLT------------LNLNGVAVSVTW 254
S G Q PTL V+R +I+ F + YW L DLT L+ +G W
Sbjct: 189 SVGRVQGPTLKLLVDREREIQAFDSDDYWELYADLTGEEGAFEAQYFYLDDDGTEARRVW 248
Query: 255 SRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPH 314
D+ +V F+A+E + V +V T++ P NT + +R AS+ LG
Sbjct: 249 ------DEGAADVAFEALEAAETADVEEVSRRTRTDDPPAPFNTTQFIRAASA-LGYSAQ 301
Query: 315 HAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPR 374
AM +AE LYT GY++YPRT+ T YPE+ + +L + +G+ V E+L +P
Sbjct: 302 RAMSMAEELYTAGYITYPRTDNTVYPEDLEPEELL-DAFTETFFGESVEELLEQEEIEPT 360
Query: 375 KG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQ---------K 424
+G ++ DHPPI PT T LD D W +++ +VR F T + +
Sbjct: 361 EGDEETTDHPPIHPTG-EMPTDLDDDEWEVFELVVRRFFATCAPSATWEHLRVVAGIEGE 419
Query: 425 VAKFSVADEMFTMEA--KYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKT 482
+ S D +++A K LL G+ V +S+ +PD GD + + ++ ++T
Sbjct: 420 ASLPSGGDAGLSLKANGKRLLEEGYHSVYPYSSADETFVPDVSQGDALAVSEQRLEAKET 479
Query: 483 TPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGY 542
PP +S LI ME G+GT ++ I + RNYV R PT L +V
Sbjct: 480 QPPRRYGQSRLIETMESMGVGTKSTRHNTIEKLYDRNYVENDPPR---PTQLAHAVVEAA 536
Query: 543 QKIDRELVEPTM 554
++ +V M
Sbjct: 537 EEFADLIVSEEM 548
>gi|448419687|ref|ZP_21580531.1| DNA topoisomerase I [Halosarcina pallida JCM 14848]
gi|445674601|gb|ELZ27138.1| DNA topoisomerase I [Halosarcina pallida JCM 14848]
Length = 835
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 157/536 (29%), Positives = 245/536 (45%), Gaps = 32/536 (5%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+R+NG +V++W G + + GH++G+DF +YN+W V+P+EL P +K
Sbjct: 31 ERVNG-VNVYKWGGK--------RCIGLSGHVVGVDFPPEYNDWRDVEPVELIDAPIDKH 81
Query: 89 EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF 148
+ + A L +++ +V+ D D+EGE I E E VR +N V R RF
Sbjct: 82 PT--QENIVAALRRLSRNARRVVIATDYDREGELIGKEAYELVRE---VNEEVPVDRVRF 136
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
S+IT +++ A N + + A + +ARQ +DL G A TR F L I
Sbjct: 137 SSITQREVTEAFENPDELDFNLAAAGEARQIVDLVWGAALTR----FLSLSARQLGDDFI 192
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW--------SRGHIF 260
S G Q PTL V+R +I F PE YW L L + + ++
Sbjct: 193 SVGRVQGPTLKLIVDREREIDAFDPEDYWELFADLEKGSESFEAQYFYLDEDDNEAERVW 252
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D ++ + + TV V+ T++ P NT + +R A S +G AM IA
Sbjct: 253 DGDDAEAAYETLRGAETATVTSVRRRTRTDDPPAPFNTTQFIRAAGS-IGYSAQRAMSIA 311
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDV 379
E LYT GY++YPRT+ T YPE+ D +L ++ + + +L +P G +
Sbjct: 312 EDLYTAGYMTYPRTDNTVYPEDLDPRELLDAFTANRTFAEDAESLLDQEEIEPTAGDNET 371
Query: 380 GDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
DHPPI PT +L +R L D W +Y+ +VR F T+ + A
Sbjct: 372 TDHPPIHPTGELPSRADLTEDEWEVYELVVRRFFATVAESAEWEHLRVVADAAGLSLKAN 431
Query: 439 AKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
K L+ G+ V + +PD + G+ + + +M ++T PP +S LI ME
Sbjct: 432 GKRLVKEGYHAVYPYFNSSESFVPDVEEGEELAVTDTEMEAKQTQPPRRYGQSRLIETME 491
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
+ GIGT A+ I + RNY+ R PT L +V ++ +V M
Sbjct: 492 QMGIGTKATRHDVIQKLYDRNYIESDPPR---PTRLARAVVEASEEFAELIVSEEM 544
>gi|313127266|ref|YP_004037536.1| DNA topoisomerase i [Halogeometricum borinquense DSM 11551]
gi|448288260|ref|ZP_21479461.1| DNA topoisomerase I [Halogeometricum borinquense DSM 11551]
gi|312293631|gb|ADQ68091.1| DNA topoisomerase I [Halogeometricum borinquense DSM 11551]
gi|445570299|gb|ELY24865.1| DNA topoisomerase I [Halogeometricum borinquense DSM 11551]
Length = 850
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 162/535 (30%), Positives = 251/535 (46%), Gaps = 32/535 (5%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R+NG +V++W G + + GH++G+DF +YN+W V+P+EL P +K
Sbjct: 32 RING-VNVYKWGGK--------RCIGLSGHVVGVDFPPEYNDWRDVEPVELIDAPIDKHP 82
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
+ + A L A++ +V+ D D+EGE I E E VR ++N V R RFS
Sbjct: 83 T--QENIVAALRRLARNARRVVIATDYDREGELIGKEAYELVR---DVNEDVPVDRVRFS 137
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+ITD+++ A N + A + +ARQ +DL G A TR+ + + GD IS
Sbjct: 138 SITDREVTEAFDNPDGLDFNLAAAGEARQIVDLVWGAALTRFLS-LSARQLGD---DFIS 193
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW--------SRGHIFD 261
G Q PTL V+R +I F PE YW L L + + + ++D
Sbjct: 194 VGRVQGPTLKLIVDREREIEAFDPEDYWELFADLQKDSESFEAQYFYLDEDGNEAERVWD 253
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
++ + + TV V+ T++ P NT + +R A S LG AM IAE
Sbjct: 254 GDDAEEAYETLRNVEAATVDSVRRRTRTDDPPAPFNTTQFIRAAGS-LGYSAQRAMSIAE 312
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVG 380
LYT GY++YPRT+ T YPE+ D +L ++ +GD + +L +P G +
Sbjct: 313 DLYTAGYITYPRTDNTVYPEDLDPRELLDAFTANRTFGDDAQNLLEQEEIEPTAGDNETT 372
Query: 381 DHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA 439
DHPPI PT +L +R+ L D W +Y+ +VR F T+ +
Sbjct: 373 DHPPIHPTGELPSRSDLTEDEWDVYELVVRRFFATVAESAKWEHLRVVADAGGLSLKANG 432
Query: 440 KYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
K L+ G+ V + +PD G+ + + ++ E++T PP +S LI MEK
Sbjct: 433 KRLVKAGYHEVYPYFNSSESFVPDVAEGESLAVTDTEIEEKQTQPPRRYGQSRLIETMEK 492
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
GIGT A+ I + RNY+ R PT L +V ++ +V M
Sbjct: 493 MGIGTKATRHDVIQKLYDRNYIESDPPR---PTRLARAVVEASEEFAELIVSEEM 544
>gi|257389049|ref|YP_003178822.1| DNA topoisomerase I [Halomicrobium mukohataei DSM 12286]
gi|257171356|gb|ACV49115.1| DNA topoisomerase I [Halomicrobium mukohataei DSM 12286]
Length = 863
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 147/492 (29%), Positives = 237/492 (48%), Gaps = 23/492 (4%)
Query: 52 KMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLV 111
+ + GH++G+DF +Y++W V+P EL + K + + + A L A+ +
Sbjct: 41 RCMGLSGHVVGVDFPPEYSDWRDVEPAELVAADVVK--SATQENIVATLRKLARRADEAT 98
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
+ D D+EGE I E E +R + ++ V R RFS+ITD++++ A N + + A
Sbjct: 99 IATDYDREGELIGKEAYELIREETDV----PVDRVRFSSITDREVREAFANPDEIDFDLA 154
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+ +ARQ +DL G A TR+ + + GD IS G Q+PTL V+R +I+ F
Sbjct: 155 AAGEARQVIDLVWGAALTRFLS-LSARQLGD---DFISVGRVQSPTLKLIVDREREIQAF 210
Query: 232 KPEPYWLLDLTLNLNGVAVSVTW-------SRGHIFDKSTCNVFFKAVEKEKHVTVVDVQ 284
PE YW + L + A + ++D++T ++ + TV V+
Sbjct: 211 DPEDYWEIFGDLQGDDAAFEAQYFYDDDGSEAERVWDEATAESVYEDLAALDAATVTSVR 270
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD 344
T++ P+ NT + A S LG AM +AE LYT GY++YPRT+ T YPE+ +
Sbjct: 271 ERTRTDAPPEPFNTTAFISAAGS-LGYSAQRAMSLAEELYTAGYMTYPRTDNTVYPEDLE 329
Query: 345 LVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPT-KLATRTQLDGDAWR 402
+L + S +G+ +L P +G ++ DHPPI PT +L R +LD D W
Sbjct: 330 PDELLDEFVGSSTFGEDAESLLEQDEIVPTEGDEETTDHPPIHPTGELPPRGELDDDEWE 389
Query: 403 LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP 462
+Y+ +VR F T+ + A K LL PG+ V +S+ +P
Sbjct: 390 IYELVVRRFFATVAEPAKWAHLRVVAEAAGHSLKANGKRLLEPGYHAVYPYSSASENVVP 449
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT 522
GD + + V + ++T PP +S LI ME G+GT ++ I + R Y+
Sbjct: 450 AVSEGDALTMSDVSLDAKQTQPPRRYGQSRLIKKMEDFGLGTKSTRHNTIEKLYDRGYIE 509
Query: 523 VTSGRRLVPTSL 534
R PT+L
Sbjct: 510 GDPPR---PTTL 518
>gi|429190846|ref|YP_007176524.1| topoisomerase IA [Natronobacterium gregoryi SP2]
gi|448327153|ref|ZP_21516488.1| DNA topoisomerase I [Natronobacterium gregoryi SP2]
gi|429135064|gb|AFZ72075.1| topoisomerase IA [Natronobacterium gregoryi SP2]
gi|445608936|gb|ELY62752.1| DNA topoisomerase I [Natronobacterium gregoryi SP2]
Length = 827
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 155/536 (28%), Positives = 247/536 (46%), Gaps = 33/536 (6%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF +Y++W V+P+EL EK
Sbjct: 28 RENGV-NVYEWGGK--------RCVGLSGHVVGVDFPPEYSDWRDVEPVELIDADVEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L A+ + + D D+EGE I E E VR +N + R RFS
Sbjct: 77 TATKENIVATLRILARKANTVTIATDYDREGELIGKEAYEIVRE---VNEAVPIRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ +++ A + A + +ARQ +DL G A TR+ + G+ GD IS
Sbjct: 134 SITENEVENAFDEPEDLDFDLAAAGEARQIIDLVWGAALTRFLS-LSAGQLGD---DFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW--------SRGHIFD 261
G Q+PTL V+R +I+ F PE YW L L + + +++
Sbjct: 190 VGRVQSPTLKLIVDREREIQAFDPEDYWELFAALEKDETTFEAQYFYRDEDDNEAERVWE 249
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
+ T + + TVVDV T++ P +T + +R A + LG AM IAE
Sbjct: 250 EVTAEEVYDTLSSRDAATVVDVNRRTRTDAPPAPFSTTQFIRAAGA-LGYSAQRAMSIAE 308
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVG 380
LYT GY++YPRT+ T YP++ D +L + G+ +L +P +G ++
Sbjct: 309 DLYTAGYITYPRTDNTVYPDDLDPEELLDEFVGHSTLGESAEALLEGDDIEPTRGDEETT 368
Query: 381 DHPPITPTKL--ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
DHPPI PT A ++ D W +Y+ +VR F T+ V+ V D
Sbjct: 369 DHPPIHPTGEIPARGGDVNDDEWEIYELVVRRFYATVAEAAVWEHLKVVAEVDDYRLKAN 428
Query: 439 AKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
K L+ PG+ V + + +PD G+ + + V++ ++T PP +S LI ME
Sbjct: 429 GKRLVEPGYHDVYPYFSTAENYVPDVDEGEELCLTEVELEAKETQPPRRYGQSRLIETME 488
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
G+GT ++ + + R Y+ R PT L + +V + +V M
Sbjct: 489 DQGLGTKSTRHNTLEKLYDRGYIESDPPR---PTKLAMAVVDAAESYADRVVSEAM 541
>gi|448319986|ref|ZP_21509474.1| DNA topoisomerase I [Natronococcus amylolyticus DSM 10524]
gi|445606392|gb|ELY60296.1| DNA topoisomerase I [Natronococcus amylolyticus DSM 10524]
Length = 827
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 155/536 (28%), Positives = 255/536 (47%), Gaps = 33/536 (6%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF ++Y++W V+P+EL EK
Sbjct: 28 RENG-VNVYEWGGK--------RCVGLSGHVVGVDFPAEYSDWRDVEPVELIDASIEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L ++ E + + D D+EGE I E + VR +++ + P + R RFS
Sbjct: 77 TATKENIVATLRILSRRAERVAIATDYDREGELIGKEAYDIVR-EVDEDVP--IRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ +++ A + + A + +ARQ +DL G A TR F G L IS
Sbjct: 134 SITENEVQNAFNEPDELDFDLAAAGEARQIIDLIWGAALTR----FLSLSAGQLGNDFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW--------SRGHIFD 261
G Q+PTL V+R +I+ F PE YW L L + ++
Sbjct: 190 VGRVQSPTLKLIVDREREIQAFDPETYWELFADLRQAETTFEAQYFYRDEDDNEAERVWA 249
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
++ + ++ + TVVDV T++ P NT + +R AS+ +G AM IAE
Sbjct: 250 EARADEVYETLSGRDAATVVDVNRRTRTDAPPAPFNTTQFIRAASA-IGYSAKRAMSIAE 308
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVG 380
LYT GY++YPRT+ T YP++ D +L + G+ +L +P +G ++
Sbjct: 309 DLYTAGYITYPRTDNTVYPDDLDPEELLEEFVGHSTLGESADSLLEADEIRPTEGDEETT 368
Query: 381 DHPPITPT-KLATRT-QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
DHPPI PT ++ +R + D W +Y+ +VR F T+ + V D
Sbjct: 369 DHPPIHPTGEIPSRGGDVSDDEWEIYELVVRRFYATVADPAEWEHLKVVAEVDDARLKAN 428
Query: 439 AKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
K L+ PG+ V + +PD + G+ + I++V++ E++T PP +S LI ME
Sbjct: 429 GKRLVEPGYHDVYPYFNTTENYVPDVETGEELSIEAVELEEKETQPPRRYGQSRLIETME 488
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
G+GT ++ + + R Y+ R PT L + +V + +V M
Sbjct: 489 DLGLGTKSTRHNTLEKLYDRGYIESDPPR---PTKLAMAVVDAAENYADRVVSEGM 541
>gi|289582117|ref|YP_003480583.1| DNA topoisomerase [Natrialba magadii ATCC 43099]
gi|448282469|ref|ZP_21473755.1| DNA topoisomerase I [Natrialba magadii ATCC 43099]
gi|289531670|gb|ADD06021.1| DNA topoisomerase [Natrialba magadii ATCC 43099]
gi|445576011|gb|ELY30470.1| DNA topoisomerase I [Natrialba magadii ATCC 43099]
Length = 843
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 160/552 (28%), Positives = 252/552 (45%), Gaps = 49/552 (8%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF S+Y++W V+P+EL EK
Sbjct: 28 RENG-VNVYEWGGK--------RCVGLSGHVVGVDFPSEYSDWRDVEPVELIDASIEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L ++ + + D D+EGE I E + VR ++ + R RFS
Sbjct: 77 TATKENIVATLRILSRKATRVTIATDYDREGELIGKEAYDIVRE---VDEEVPIRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ +++ A + + A + +ARQ +DL G A TR F G L IS
Sbjct: 134 SITENEVQDAFDEPDELDFDLAAAGEARQIIDLVWGAALTR----FLSLSAGQLGNDFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTWSRGH--------- 258
G Q+PTL V+R +I F PE YW L D+ S T S
Sbjct: 190 VGRVQSPTLKLMVDREREIEAFDPEDYWELVADVAKGSEAQRASETSSGDEPRESEAFEA 249
Query: 259 --------------IFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRV 304
+++++ F+ + + TVVDV T++ + P NT + +R
Sbjct: 250 QYFYRDEDGNEAERVWEEAVAEDVFETLSQRDTATVVDVNRRTRTDSPPAPFNTTQFIRA 309
Query: 305 ASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVRE 364
AS+ LG AM IAE LYT GY++YPRT+ T YP++ D +L P G+
Sbjct: 310 ASA-LGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLDDFVGHPTLGESAES 368
Query: 365 VLSNGISKPRKG-KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYT 422
+L +P +G ++ DHPPI PT ++ +R + D W +++ +VR F T+ ++
Sbjct: 369 LLEADEIEPTEGDEETTDHPPIHPTGEIPSRGDVSDDEWEVFELVVRRFYATVAEAAIWE 428
Query: 423 QKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKT 482
VA K L G+ V + + +PD G+ I I V++ +++T
Sbjct: 429 HLKVVAEVAAHRLKANGKRLDKAGYHDVYPYFSTTENYVPDVSEGEEITITDVELEDKQT 488
Query: 483 TPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGY 542
PP +S LI ME GIGT ++ I + R Y+ R PT L + +V
Sbjct: 489 QPPRRYGQSRLIETMEDMGIGTKSTRHETIQKLYDRGYIESDPPR---PTKLAMAVVEAA 545
Query: 543 QKIDRELVEPTM 554
+ +V M
Sbjct: 546 ENYADRVVSEDM 557
>gi|448382895|ref|ZP_21562324.1| DNA topoisomerase I [Haloterrigena thermotolerans DSM 11522]
gi|445660075|gb|ELZ12872.1| DNA topoisomerase I [Haloterrigena thermotolerans DSM 11522]
Length = 843
Score = 225 bits (574), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 156/552 (28%), Positives = 256/552 (46%), Gaps = 49/552 (8%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF S+Y++W V+P+EL EK
Sbjct: 28 RENG-VNVYEWGGK--------RCVGLSGHVVGVDFPSEYSDWRDVEPVELIDADVEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L + E + + D D+EGE I E + VR +++ + P + R RFS
Sbjct: 77 TATKENIVATLRLLTRRAERVTIATDYDREGELIGKEAYDIVR-EVDEDVP--IRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ +++ A + A + +ARQ +DL G A TR+ + G+ GD IS
Sbjct: 134 SITENEVQQAFDEPDDLDFDLAAAGEARQIIDLIWGAALTRFLS-LSAGQLGD---DFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGH----------- 258
G Q+PTL V+R +I F PE YW + L + + S G
Sbjct: 190 VGRVQSPTLKLIVDREREIEAFDPEDYWEIFADLRKSEAQRASETSSGEEPRDDDTAFES 249
Query: 259 --------------IFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRV 304
++++ + ++ + + TVVDV T++ T P+ NT + +R
Sbjct: 250 QYFYRDEDGNEAERVWEEEIADEVYETLSDRESATVVDVNRRTRTDTPPEPFNTTQFIRA 309
Query: 305 ASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVRE 364
A + +G AM IAE LYT GY++YPRT+ T YP++ D +L + GD
Sbjct: 310 AGA-IGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLDEFTGHSTLGDSAES 368
Query: 365 VLSNGISKPRKG-KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYT 422
+L P +G ++ DHPPI PT ++ +R + D W +++ +VR F T+ +
Sbjct: 369 LLEADEITPTEGDEETTDHPPIHPTGEIPSRGDVSDDEWEIFELVVRRFYATVADAAEWE 428
Query: 423 QKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKT 482
V D K L+ PG+ V + + +PD G+ + + V++ ++T
Sbjct: 429 HLKVVADVDDYRLKANGKRLVEPGYHDVYPYFSTTENFVPDVDEGEELALSDVELEAKQT 488
Query: 483 TPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGY 542
PP +S LI ME GIGT ++ + + R Y+ R PT L + +V
Sbjct: 489 QPPRRYGQSRLIETMEDMGIGTKSTRHNTLEKLYDRGYIESDPPR---PTKLAMAVVDAA 545
Query: 543 QKIDRELVEPTM 554
+ +V M
Sbjct: 546 ESYADRVVSEEM 557
>gi|221195634|ref|ZP_03568688.1| DNA topoisomerase 1 [Atopobium rimae ATCC 49626]
gi|221184400|gb|EEE16793.1| DNA topoisomerase 1 [Atopobium rimae ATCC 49626]
Length = 842
Score = 225 bits (574), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 138/445 (31%), Positives = 224/445 (50%), Gaps = 16/445 (3%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L N AK + +++ D D+EGE I + + V +++ + V RAR+SA T +I A
Sbjct: 137 LKNLAKKSDAVIIATDFDREGELIGSDALAQV---LSVKADLPVSRARYSAFTKYEIDTA 193
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
NLV+ + A + ++RQ +DL G TRY T G +G+ S G QTPTL
Sbjct: 194 FNNLVELDYDLAAAGESRQFIDLIWGAVLTRYLTCVRFGGFGNTR----SAGRVQTPTLA 249
Query: 220 FCVERHDKIRTFKPEPYWLLD---LTLNLNGVAV-SVTWSRGHIFDKSTCNVFFKAVEKE 275
VER + F PE YW++ L N A +T + ++K + F AV+++
Sbjct: 250 LVVERERERLAFTPEDYWVISGEATPLEDNSDATFKITHATSRFWNKEEADAVFDAVKEQ 309
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
TVV ++S ++ + P NT L A+S G+ P M++AE LY G +SYPR +
Sbjct: 310 HQATVVRIESKSRKQQPPAPFNTTSLQAAAASE-GLSPARTMRLAESLYMDGLISYPRVD 368
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSNG-ISKPRKGKDVGDHPPITPTKLATRT 394
T YP + DL +R S P + + +L+ G +S R ++ DHPPI PT A +
Sbjct: 369 NTVYPSSLDLKGCVRTLSSVPQYAGVCKTLLAAGKLSATRGKQESTDHPPIYPTAAADQN 428
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
+L AW+LY+ I R F+ TL G +A + F L GF + +
Sbjct: 429 KLQPAAWKLYNLIARRFLATLMGPATIAGTKITLDIAGQPFVANGNVLAEKGFRAIYPFG 488
Query: 455 AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINN 514
K++ +P+ G+++ + + + ++T PP ++ +LI MEK G+GT A+ I+
Sbjct: 489 LKKDDQLPELSQGEVVDVTKLNLDAKQTEPPARYSQGKLIQEMEKRGLGTKATRASIIDT 548
Query: 515 ICQRNYVTVTSGRRLVPTSLGIVLV 539
+ QR Y+ + P+ LG+ ++
Sbjct: 549 LYQRKYL---KNDPVEPSQLGMAII 570
>gi|448681338|ref|ZP_21691471.1| DNA topoisomerase I [Haloarcula argentinensis DSM 12282]
gi|445767871|gb|EMA18964.1| DNA topoisomerase I [Haloarcula argentinensis DSM 12282]
Length = 827
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 147/512 (28%), Positives = 245/512 (47%), Gaps = 23/512 (4%)
Query: 52 KMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLV 111
++ + GH++G+DF +YN+W V+P+EL K E T + + L A++ +
Sbjct: 41 RVVGLSGHVVGVDFPEEYNDWRDVEPVELIDADVTK-EPTQE-NIVTTLKQLAREADEAT 98
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
+ D D+EGE I E E +R + ++ V R RFS+IT+++++ A N + A
Sbjct: 99 IATDYDREGELIGKEAYELIREETDV----PVDRVRFSSITEREVRDAFANPDDIDFDLA 154
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+ +ARQ +DL G A TR+ + + GD IS G Q+PTL V+R +I+ F
Sbjct: 155 AAGEARQIIDLVWGAALTRFLS-LSARQLGD---DFISVGRVQSPTLKLIVDREREIQAF 210
Query: 232 KPEPYWLLDLTLNLNGVAVSVTW-------SRGHIFDKSTCNVFFKAVEKEKHVTVVDVQ 284
PE YW + L NG + ++ + + + + TV V+
Sbjct: 211 DPEDYWEIFADLQKNGSGFEAQYFYDDDGKEAERVWVEDDADDAYADLTGVDAATVTSVR 270
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD 344
T++ + P NT + ASS LG AM IAE LYT GY++YPRT+ T YP++ +
Sbjct: 271 RRTRTDSPPTPFNTTAFISAASS-LGYSAQQAMSIAEELYTTGYITYPRTDNTVYPDDLE 329
Query: 345 LVAVLRQQESSPDWGDHVREVLS-NGISKPRKGKDVGDHPPITPT-KLATRTQLDGDAWR 402
A+L + + +G+ +L + I+ ++ DHPPI PT ++ + L D W
Sbjct: 330 EDALLDEFVGAGHFGEDAETLLEQDDITATEGDEETTDHPPIHPTGEIPPKVDLSDDEWE 389
Query: 403 LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP 462
+Y+ +VR F T+ + K L+ PG+ V +S+ +P
Sbjct: 390 IYELVVRRFFATVAEAATWEHLRVVADAGGRSLKANGKRLVEPGYHEVYPYSSASENHVP 449
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT 522
D + G+ + I V+M ++T PP +S LI ME G+GT ++ I + R Y+
Sbjct: 450 DVEEGEELAISEVRMEAKQTQPPRRYGQSRLIQTMEDKGLGTKSTRHNSIEKLYDRGYIE 509
Query: 523 VTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
R PT+L + +V ++ +V M
Sbjct: 510 GDPPR---PTTLAMAVVEAAEEFADHVVSDEM 538
>gi|410670057|ref|YP_006922428.1| DNA topoisomerase I [Methanolobus psychrophilus R15]
gi|409169185|gb|AFV23060.1| DNA topoisomerase I [Methanolobus psychrophilus R15]
Length = 741
Score = 225 bits (573), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 153/503 (30%), Positives = 242/503 (48%), Gaps = 18/503 (3%)
Query: 56 VCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLD 115
+ GHI+ LDF YNNW KV+ EL + + ++K+ + L K+ + D
Sbjct: 49 LSGHIVKLDFPKAYNNWQKVEAKELIDA--QVITTSTQVKIVSALKKLGKEATKATIATD 106
Query: 116 CDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVD 175
D+EGE I E ++ ++ ++N R +SAIT K+I N K + A +
Sbjct: 107 YDREGELIGVEAVDILK---SVNPDIEFDRVHYSAITPKEIHDTFENPAKIDFSLADAGH 163
Query: 176 ARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEP 235
+RQ +DL G + TRY G+ G++ +S G Q+PTL VER + F
Sbjct: 164 SRQVIDLVWGASLTRY-ISLAAGRLGNM---FLSVGRVQSPTLALIVEREKERDAFVARK 219
Query: 236 YWLLDLTLNLNGVAVSVTWSRGHIF-DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQ 294
YW L +L V V + F +K + A++ V + +STK+ +P
Sbjct: 220 YWELSASLRTRKGEVFVAEHKTSRFWEKEEVDSALSALKD--TAVVSSITTSTKTDKQPT 277
Query: 295 ALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQES 354
NT E + AS+ +G AM IAE LY G++SYPRT+ T YPE+ DL A +
Sbjct: 278 PFNTTEFISAAST-MGYTASSAMNIAESLYMNGFISYPRTDNTVYPESIDLRAQIEIFTK 336
Query: 355 SPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIG 413
P + ++ ++L+ P +GK + DHPPI P LA +++L W+LY+ +VR F
Sbjct: 337 GP-FKEYAEKLLAMKELVPTRGKKETTDHPPIYPASLAKKSELSEQEWKLYELVVRRFFA 395
Query: 414 TLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQ 473
T + A+F + E F L+ PG+ ++A ++ +P GD + +
Sbjct: 396 TFAEPAEWETIKARFDITGEEFKANGARLVKPGWRWYYPYNAPEDRLLPALAEGDELEVL 455
Query: 474 SVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTS 533
S + E++T PP + LI LME+ G+GT A+ I+ + R Y+ G L PT
Sbjct: 456 SKDVAEKETQPPGRYGQGRLIKLMEELGLGTKATRHEIISKLYSRAYI---HGNPLQPTK 512
Query: 534 LGIVLVHGYQKIDRELVEPTMRS 556
+V +K + +P M S
Sbjct: 513 TAFAVVESLEKFAPTISKPDMTS 535
>gi|308234129|ref|ZP_07664866.1| DNA topoisomerase I [Atopobium vaginae DSM 15829]
gi|328943646|ref|ZP_08241111.1| DNA topoisomerase TopA [Atopobium vaginae DSM 15829]
gi|327491615|gb|EGF23389.1| DNA topoisomerase TopA [Atopobium vaginae DSM 15829]
Length = 862
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 149/479 (31%), Positives = 235/479 (49%), Gaps = 25/479 (5%)
Query: 91 TPKLKLPA------FLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVW 144
+P KLPA L N AK + +++ D D+EGE I + + ++ Q+ ++ P V+
Sbjct: 122 SPIEKLPAEKGIIRALKNLAKKADSIIIATDFDREGELIGSDALHQMQ-QVAVDVP--VF 178
Query: 145 RARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLD 204
RAR+SA T +I A +LVK + A + ++RQ +DL G TRY T K+ L
Sbjct: 179 RARYSAFTQAEIDHAFEHLVKLDQNLADAGESRQYIDLIWGAVLTRYLT---MAKFSGL- 234
Query: 205 ASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVS-----VTWSRGHI 259
++ S G QTPTL VE+ + F PE YW++ L++ A + T +
Sbjct: 235 GNVRSAGRVQTPTLALVVEKERERNAFVPEDYWVISGMLSVTPDASADEKFKTTHAIARF 294
Query: 260 FDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQI 319
DK F V + TV +++ +++ P NT L + A++ G+ P M++
Sbjct: 295 KDKEQATAAFNRVRNARSATVEEIEEKSRTTRPPAPFNTTSL-QAAAAAEGITPARTMRL 353
Query: 320 AERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKD- 378
AE LY +G +SYPR + T YP + +L A ++ P + + E+LS P +GK
Sbjct: 354 AESLYMEGLISYPRVDNTVYPSSLNLRACVKNLAHVPQYRPYCNELLSQEKLTPTRGKQQ 413
Query: 379 VGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
DHPPI PT A T+LD AW+LY+ I R F+ TL V K ++ADE F
Sbjct: 414 TTDHPPIYPTAAADPTKLDAAAWKLYNLIARRFLATLSAPSVAQNTKLKLNIADEPFVSS 473
Query: 439 AKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
+ GF + + K+E +P GD++ + + M ++T PP ++ LI ME
Sbjct: 474 GTVITTLGFRAIYPYGLHKDEQLPAVSQGDVLSVHDMNMDAKQTEPPARYSQGRLIQEME 533
Query: 499 KHGIGTDASIPVHINNICQRNY-VTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
KHG+GT ++ +I QR Y V G + + LG ++ + + M S
Sbjct: 534 KHGLGTKST----RASIIQRLYDVKYLKGDPVEASQLGCAVIDALTQYAPHITSSNMTS 588
>gi|405982831|ref|ZP_11041142.1| DNA topoisomerase I [Slackia piriformis YIT 12062]
gi|404389540|gb|EJZ84616.1| DNA topoisomerase I [Slackia piriformis YIT 12062]
Length = 846
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 150/484 (30%), Positives = 232/484 (47%), Gaps = 17/484 (3%)
Query: 74 KVDPLELFS-CPTEKREATPKLK-LPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAV 131
K+D L + P EK+ PK K + L N AK + +++ D D+EGE I + + +
Sbjct: 111 KMDALPYLAYAPIEKK---PKEKDIIRSLKNLAKKSDEIIIATDFDREGELIGSDALSCM 167
Query: 132 RHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRY 191
+ ++N +P V+RAR+SAIT +I+ A +LV+ + A++ ++RQ++DL G TRY
Sbjct: 168 K-EVNDTAP--VFRARYSAITKDEIQHAFSHLVELDNDLAQAGESRQDIDLIWGAVLTRY 224
Query: 192 QTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVS 251
T YG++ +S G QTPTL V R + F PE YW++
Sbjct: 225 LTIVKFAGYGNVRSS----GRVQTPTLALIVARERERMAFVPEDYWVIKARFGKEPEDFE 280
Query: 252 VTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGM 311
T + ++ N VE + ++ ++ P NT LM A+S G+
Sbjct: 281 ATHAMARFKAEAQANAVMGHVEDASKGVISSIEKRKRTVAAPVPFNTTSLMAAAASE-GL 339
Query: 312 GPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNG-I 370
P M+IAE LY GY+SYPR + T YPE+ DL +R+ + + +E+LS G +
Sbjct: 340 SPARTMRIAESLYMDGYISYPRVDNTVYPESLDLEGTVRKLSDVAVYRPYCQELLSKGAL 399
Query: 371 SKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSV 430
R K+ DHPPI PT A +L W+LY+ I R F+ TL V V
Sbjct: 400 VATRGKKETTDHPPIHPTAAADPDKLGAPEWKLYNLIARRFLATLSESAVVEGTKVTIDV 459
Query: 431 ADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTE 490
A E F L+ PGF + + K+E +P + G + Q +++T PP ++
Sbjct: 460 ASEPFVTRGDVLVKPGFRAIYPYGLKKDEQLPSLEEGQSVDFQGATCTKKQTEPPARYSQ 519
Query: 491 SELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELV 550
+LI MEK G+GT A+ I + YV + P+ LGI + K ++
Sbjct: 520 GKLIQEMEKLGLGTKATRHAIIERLYTVKYV---QNDPIEPSQLGIAVCDALGKFAPQIT 576
Query: 551 EPTM 554
P M
Sbjct: 577 SPDM 580
>gi|13540850|ref|NP_110538.1| DNA topoisomerase I [Thermoplasma volcanium GSS1]
gi|14324233|dbj|BAB59161.1| DNA topoisomerase 1 [Thermoplasma volcanium GSS1]
Length = 770
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 152/505 (30%), Positives = 247/505 (48%), Gaps = 26/505 (5%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR--EATPKLKLPAFLANEAKDCEFL 110
+ + GHI+ DF ++NW+K D EL K+ + L +F + +
Sbjct: 50 LIPLSGHIVEADFPENFSNWEKTDLKELIDADIVKKVKNKSAYQTLSSFKGK----ADEI 105
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
++ D D+EGE I E ++ ++ + V RA+FS++ ++I+ A + N
Sbjct: 106 IIATDYDREGELIGVEALDIIKE-----GQEKVLRAKFSSLVGQEIRNAFEKPIDVNYNL 160
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
A + DAR+ +DL G TR FF G L +S G QTPTL VER +I
Sbjct: 161 ADAADARESIDLIWGAVLTR----FFSLATGRLGRYFLSAGRVQTPTLAIVVEREREIEN 216
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
FKP+ +W + +T G + + +FDK N F ++ + TV+ + +S
Sbjct: 217 FKPQTFWTISITFQKEGEFQAAYEKK--LFDKDVANSVFSSING-RDGTVIKFEKHEESI 273
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
+P +T E +R AS +G+ P AM IAE LYT+G +SYPRT+ T YP +L VL
Sbjct: 274 RRPTPFSTTEFLREASR-IGIMPTKAMSIAESLYTRGLISYPRTDNTVYPRAINLRNVL- 331
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVR 409
Q+ S + ++V E+L P +G+ + DHPPI P ++ + +L GD R+YD I+R
Sbjct: 332 QKFSKSKYSNYVEEILGWEKIIPSRGRTETTDHPPIYPVEMP-KEELKGDYARIYDLILR 390
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDL 469
FI TL D T K A+ V F G+ V +S+ ++E +PD G++
Sbjct: 391 RFISTLYRDGRKTVKEAEIDVNGYKFLARGSQTTDLGWMAVYGYSS-RDEFMPDLSEGEI 449
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRL 529
+ + + E +T PP + L+ ME +GT ++ I + R ++ G +
Sbjct: 450 LHGTNWLLNEDQTKPPPRYDMASLLKKMEDLNLGTKSTRHDIIGKLIDRGFI---EGNPV 506
Query: 530 VPTSLGIVLVHGYQKIDRELVEPTM 554
PT LGI + + ++ + +P M
Sbjct: 507 RPTGLGIAFIDAVKSVNSSIADPDM 531
>gi|448671391|ref|ZP_21687330.1| DNA topoisomerase I [Haloarcula amylolytica JCM 13557]
gi|445765994|gb|EMA17131.1| DNA topoisomerase I [Haloarcula amylolytica JCM 13557]
Length = 838
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 147/512 (28%), Positives = 245/512 (47%), Gaps = 23/512 (4%)
Query: 52 KMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLV 111
++ + GH++G+DF +YN+W V+P+EL K E T + + L A++ +
Sbjct: 41 RVVGLSGHVVGVDFPEEYNDWRDVEPVELIDADVTK-EPTQE-NIVTTLKQLAREADEAT 98
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
+ D D+EGE I E E +R + + V R RFS+IT+++++ A N + A
Sbjct: 99 IATDYDREGELIGKEAYELIREETD----APVDRVRFSSITEREVRDAFANPDDIDFDLA 154
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+ +ARQ +DL G A TR+ + + GD IS G Q+PTL V+R +I+ F
Sbjct: 155 AAGEARQIIDLVWGAALTRFLS-LSARQLGD---DFISVGRVQSPTLKLIVDREREIQAF 210
Query: 232 KPEPYWLLDLTLNLNGVAVSVTW-------SRGHIFDKSTCNVFFKAVEKEKHVTVVDVQ 284
PE YW + L NG + ++ + + + + TV V+
Sbjct: 211 DPEDYWEIFADLQKNGSGFEAQYFYDDDGKEAERVWVEDDADDAYADLTGVDAATVTSVR 270
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD 344
T++ + P NT + ASS LG AM IAE LYT GY++YPRT+ T YP++ +
Sbjct: 271 RRTRTDSPPTPFNTTAFISAASS-LGYSAQQAMSIAEELYTTGYITYPRTDNTVYPDDLE 329
Query: 345 LVAVLRQQESSPDWGDHVREVLS-NGISKPRKGKDVGDHPPITPT-KLATRTQLDGDAWR 402
A+L + + +G+ ++L + I+ ++ DHPPI PT ++ + L D W
Sbjct: 330 EDALLDEFVGAGHFGEDAEKLLEQDDITATEGDEETTDHPPIHPTGEIPPKVDLSDDEWE 389
Query: 403 LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP 462
+Y+ +VR F T+ + K L+ PG+ V +S+ +P
Sbjct: 390 IYELVVRRFFATVAEAATWEHLRVVADAGGRSLKANGKRLVEPGYHEVYPYSSASENHVP 449
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT 522
D + G+ + I V+M ++T PP +S LI ME G+GT ++ I + R Y+
Sbjct: 450 DVEEGEELAISEVRMEAKQTQPPRRYGQSRLIQTMEDKGLGTKSTRHNSIEKLYDRGYIE 509
Query: 523 VTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
R PT+L + +V ++ +V M
Sbjct: 510 GDPPR---PTTLAMAVVEAAEEFADHVVSDEM 538
>gi|344212444|ref|YP_004796764.1| DNA topoisomerase I [Haloarcula hispanica ATCC 33960]
gi|343783799|gb|AEM57776.1| DNA topoisomerase I [Haloarcula hispanica ATCC 33960]
Length = 841
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 145/512 (28%), Positives = 243/512 (47%), Gaps = 23/512 (4%)
Query: 52 KMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLV 111
++ + GH++G+DF +YN+W V+P+EL K + + L A++ +
Sbjct: 41 RVVGLSGHVVGVDFPEEYNDWRDVEPVELIDADVTKEPT--QENIVTTLKQLAREADEAT 98
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
+ D D+EGE I E E +R + + V R RFS+IT+++++ A N + A
Sbjct: 99 IATDYDREGELIGKEAYELIREETD----APVDRVRFSSITEREVRDAFANPDDIDFDLA 154
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+ +ARQ +DL G A TR+ + + GD IS G Q+PTL V+R +I+ F
Sbjct: 155 AAGEARQIIDLVWGAALTRFLS-LSARQLGD---DFISVGRVQSPTLKLIVDREREIQAF 210
Query: 232 KPEPYWLLDLTLNLNGVAVSVTW-------SRGHIFDKSTCNVFFKAVEKEKHVTVVDVQ 284
PE YW + L NG + ++ + + + + TV V+
Sbjct: 211 DPEDYWEIFADLQKNGSGFEAQYFYDDDGKEAERVWVEDDADDAYADLTGVNAATVTSVR 270
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD 344
T++ + P NT + ASS LG AM IAE LYT GY++YPRT+ T YP++ +
Sbjct: 271 RRTRTDSPPTPFNTTAFISAASS-LGYSAQQAMSIAEELYTTGYITYPRTDNTVYPDDLE 329
Query: 345 LVAVLRQQESSPDWGDHVREVLS-NGISKPRKGKDVGDHPPITPT-KLATRTQLDGDAWR 402
A+L + + +G+ ++L + I+ ++ DHPPI PT ++ + L D W
Sbjct: 330 EDALLDEFVGAGHFGEDAEKLLEQDDITATEGDEETTDHPPIHPTGEIPPKVDLSDDEWE 389
Query: 403 LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP 462
+Y+ +VR F T+ + K L+ PG+ V +S+ +P
Sbjct: 390 IYELVVRRFFATVAEAATWEHLRVVADAGGRSLKANGKRLVEPGYHEVYPYSSASENHVP 449
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT 522
D + G+ + I V+M ++T PP +S LI ME G+GT ++ I + R Y+
Sbjct: 450 DVEEGEELAISEVRMEAKQTQPPRRYGQSRLIQTMEDKGLGTKSTRHNSIEKLYDRGYIE 509
Query: 523 VTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
R PT+L + +V ++ +V M
Sbjct: 510 GDPPR---PTTLAMAVVEAAEEFADHVVSDEM 538
>gi|355575535|ref|ZP_09045005.1| hypothetical protein HMPREF1008_00982 [Olsenella sp. oral taxon 809
str. F0356]
gi|354817547|gb|EHF02052.1| hypothetical protein HMPREF1008_00982 [Olsenella sp. oral taxon 809
str. F0356]
Length = 845
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 149/477 (31%), Positives = 231/477 (48%), Gaps = 25/477 (5%)
Query: 91 TPKLKLPA------FLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVW 144
TP K PA L N AK + +V+ D D+EGE I + + +R ++ ++P V
Sbjct: 122 TPIQKEPAEKGIIRALKNLAKKADSIVIGTDFDREGELIGSDALRQMR-EVAPDTP--VS 178
Query: 145 RARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLD 204
RAR+SA T +I A NLV+ + A + ++RQ +DL G TRY T G +G++
Sbjct: 179 RARYSAFTKAEIDHAFQNLVELDQDLADAGESRQYIDLIWGAVLTRYLTMARFGGFGNVR 238
Query: 205 ASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNG-----VAVSVTWSRGHI 259
S G QTPTL VE+ + F PE YW++ L G V+ +
Sbjct: 239 ----SAGRVQTPTLALVVEKEREREAFVPEDYWVISGQLAPQGDVDEDARFKVSHATARF 294
Query: 260 FDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQI 319
D++ F+ V + TV V+ + + P NT L + A++ G+ P M++
Sbjct: 295 KDEAAAKAAFERVRDAREATVTKVEKKSHTTRPPAPFNTTSL-QAAAAAEGISPARTMRL 353
Query: 320 AERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-D 378
AE LY G +SYPR + T YP++ DL V+ + P + +L+ G P +GK +
Sbjct: 354 AEGLYMDGLISYPRVDNTVYPKSLDLREVVEALSAVPQYRPTCSRLLAGGPLHPTRGKQE 413
Query: 379 VGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
DHPPI PT A +L+G AWRLY+ I R F+ TL V F VA E F
Sbjct: 414 TTDHPPIYPTAAADPDRLEGPAWRLYNLIARRFLATLEDPAVSESTKLGFDVAGEPFQAS 473
Query: 439 AKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
++ PGF + + + K+E +P GD+ + + + ++T PP ++ LI ME
Sbjct: 474 GTVIVKPGFRAIYPFGSRKDEQLPALAEGDVCDVVGMGLEAKQTEPPARYSQGRLIQEME 533
Query: 499 KHGIGTDASIPVHINNICQRNY-VTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
K G+GT ++ +I QR Y V + P+ LG+ ++ + + P M
Sbjct: 534 KRGLGTKST----RASIIQRLYDVKYLKNDPVEPSQLGMAVIEALTQYAPHVTSPDM 586
>gi|383320605|ref|YP_005381446.1| DNA topoisomerase I [Methanocella conradii HZ254]
gi|379321975|gb|AFD00928.1| DNA topoisomerase I [Methanocella conradii HZ254]
Length = 700
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 150/503 (29%), Positives = 231/503 (45%), Gaps = 17/503 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+ + GH++ LDF +Y W P L + P K + L + A + +
Sbjct: 61 VIGLAGHVVELDFPPEYGRWTAHPPSALIAAPV--ITVPTKKDIIGALESLAPSATRVTI 118
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
D D+EGE I E VR S R R+S+ ++I A + A
Sbjct: 119 ATDYDREGELIGVEAYNIVRRL----SKAPFDRVRYSSFARQEILGAFSKPTSLDFSLAA 174
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+ + RQE+DL G A TR+ + G D +S G QTP L V+R +I+ F
Sbjct: 175 AGECRQEIDLVWGAALTRFVS--LAGNRAGKD--FLSVGRVQTPLLAIIVDREKEIQAFV 230
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
+PYW L L A +G +K +K + K TV + +K +
Sbjct: 231 SKPYWELAAVLLKGAEAFMARHKKGRFDNKEEAMAIYKKLGKA--ATVKSILRESKKEPA 288
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P +T EL++ A+S +G AMQ AE LY G +SYPRT+ T YP DL +
Sbjct: 289 PTPFSTTELLK-AASAIGFSAAGAMQAAEELYINGRISYPRTDNTVYPPTLDLRQAVGLF 347
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
++SP++ E+L+ P KGK + DHPPI P A++ Q+D W+LY+ +VR F
Sbjct: 348 KASPEFAQSALELLAQRSLVPTKGKVESKDHPPIYPVACASKAQMDERHWKLYELVVRRF 407
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIP 471
TL + A+ ++ E F+ + K L PG+ + K E +P GD++
Sbjct: 408 FATLSPPCEWDVVRAEVDISGEPFSADGKRLSAPGWRKHYPYGMPKEEVLPPLSVGDVLA 467
Query: 472 IQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVP 531
++ + ++E+KT PP + LI LMEK G+GT A+ ++ + R Y+ G P
Sbjct: 468 VKKINLLEKKTEPPKRYGQGRLIELMEKLGLGTKATRHEALSKLYSRGYI---EGNPPKP 524
Query: 532 TSLGIVLVHGYQKIDRELVEPTM 554
T GI L+ + + P M
Sbjct: 525 TQTGITLIDALRAHANAITTPDM 547
>gi|448606973|ref|ZP_21659230.1| DNA topoisomerase I [Haloferax sulfurifontis ATCC BAA-897]
gi|445738401|gb|ELZ89921.1| DNA topoisomerase I [Haloferax sulfurifontis ATCC BAA-897]
Length = 840
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 162/542 (29%), Positives = 245/542 (45%), Gaps = 36/542 (6%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+RMNG +V++W G + + GH++G+DF +YN+W V+P+EL P EK
Sbjct: 31 ERMNG-VNVYKWGGK--------RCIGLSGHVVGVDFPPEYNDWRDVEPVELIGAPVEKH 81
Query: 89 EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF 148
+ + + D D+EGE I E E VR ++N V R RF
Sbjct: 82 PTQENIVAALRRLARRAG--KVTIATDYDREGELIGKEAYELVR---DVNEDVPVDRVRF 136
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
S+IT++++ A N + A + +ARQ +DL G A TR F L I
Sbjct: 137 SSITNREVTEAFENPDDLDFDLAAAGEARQIIDLVWGAALTR----FLSLSARQLGNDFI 192
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTW----------SR 256
S G Q PTL V+R +I F PE YW L LT + +G A S
Sbjct: 193 SVGRVQGPTLKLIVDREREIEAFDPEDYWELFSKLTKDADGDAESFEAQYFYLDDDGTEA 252
Query: 257 GHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHA 316
I+D+ + ++ + + V V T++ T P NT + +R A S +G A
Sbjct: 253 ERIWDEESAESAYQTLLGVEAAEVSSVNRRTRADTPPAPFNTTQFIRAAGS-IGYSAQRA 311
Query: 317 MQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG 376
M IAE LYT GY++YPRT+ T YP++ D +L E + + +L +P +G
Sbjct: 312 MSIAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKEDAESLLEQEEIEPTEG 371
Query: 377 -KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM 434
+ DHPPI PT +L + + L D W +Y+ +VR F T+ D V+ V
Sbjct: 372 DNETTDHPPIHPTGELPSASDLSDDEWDVYELVVRRFFATVAEDAVWEHLRVVAEVEGLS 431
Query: 435 FTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
K LL G+ V + +PD + G+ + + + ++T PP +S LI
Sbjct: 432 LKANGKRLLEAGYHDVYPYFNSTESFVPDVEEGESLVLSDTHLDAKQTQPPRRYGQSRLI 491
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
ME+ GIGT A+ I + R Y+ R PT L +V + + +V M
Sbjct: 492 ETMEQMGIGTKATRHDVIQKLYDRGYIESDPPR---PTRLARAVVEASEDFAKLIVSEEM 548
Query: 555 RS 556
S
Sbjct: 549 TS 550
>gi|448582254|ref|ZP_21645758.1| DNA topoisomerase I [Haloferax gibbonsii ATCC 33959]
gi|445731902|gb|ELZ83485.1| DNA topoisomerase I [Haloferax gibbonsii ATCC 33959]
Length = 840
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 162/542 (29%), Positives = 244/542 (45%), Gaps = 36/542 (6%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+RMNG +V++W G + + GH++G+DF +YN+W V+P+EL P EK
Sbjct: 31 ERMNG-VNVYKWGGK--------RCIGLSGHVVGVDFPPEYNDWRDVEPVELIGAPVEKH 81
Query: 89 EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF 148
+ + + D D+EGE I E E VR ++N V R RF
Sbjct: 82 PTQENIVAALRRLARRAGT--VTIATDYDREGELIGKEAYELVR---DVNEDVPVDRVRF 136
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
S+IT +++ A N + A + +ARQ +DL G A TR F L I
Sbjct: 137 SSITKREVTEAFENPDDLDFNLAAAGEARQIIDLVWGAALTR----FLSLSARQLGNDFI 192
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTW----------SR 256
S G Q PTL V+R +I F PE YW L LT + +G A S
Sbjct: 193 SVGRVQGPTLKLIVDREREIEAFDPEDYWELFSKLTKDADGDAESFEAQYFYLDDDGTEA 252
Query: 257 GHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHA 316
I+D+ + ++ + + V V T++ T P NT + +R A S +G A
Sbjct: 253 ERIWDEESAESAYQTLLGVESAEVASVNRRTRTDTPPAPFNTTQFIRAAGS-IGYSAQRA 311
Query: 317 MQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG 376
M IAE LYT GY++YPRT+ T YP++ D +L E + + +L +P +G
Sbjct: 312 MSIAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKEDAESLLEQEEIEPTEG 371
Query: 377 -KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM 434
+ DHPPI PT +L + + L D W +Y+ +VR F T+ D V+ V
Sbjct: 372 DNETTDHPPIHPTGELPSASDLTEDEWDVYELVVRRFFATVAEDAVWEHLRVVAEVEGLS 431
Query: 435 FTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
K LL G+ V + +PD + G+ + + + ++T PP +S LI
Sbjct: 432 LKANGKRLLEAGYHDVYPYFNSTESFVPDVEEGESLVLSDTHLDAKQTQPPRRYGQSRLI 491
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
ME+ GIGT A+ I + R Y+ R PT L +V + + +V M
Sbjct: 492 ETMEQMGIGTKATRHDVIQKLYDRGYIESDPPR---PTRLARAVVEASEDFAKLIVSEEM 548
Query: 555 RS 556
S
Sbjct: 549 TS 550
>gi|448543354|ref|ZP_21624919.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-646]
gi|448550308|ref|ZP_21628759.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-645]
gi|448559491|ref|ZP_21633565.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-644]
gi|445706491|gb|ELZ58369.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-646]
gi|445710881|gb|ELZ62676.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-644]
gi|445711751|gb|ELZ63540.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-645]
Length = 840
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 163/542 (30%), Positives = 251/542 (46%), Gaps = 36/542 (6%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+RMNG +V++W G + + GH++G+DF +YN+W V+P+EL P EK
Sbjct: 31 ERMNG-VNVYKWGGK--------RCIGLSGHVVGVDFPPEYNDWRDVEPVELIGAPVEKH 81
Query: 89 EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF 148
+ + + D D+EGE I E E VR ++N V R RF
Sbjct: 82 PTQENIVAALRRLARRAGN--VTIATDYDREGELIGKEAYELVR---DVNEDVPVDRVRF 136
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
S+IT++++ A N + A + +ARQ +DL G A TR F L I
Sbjct: 137 SSITNREVTEAFENPDDLDFDLAAAGEARQIIDLVWGAALTR----FLSLSARQLGNDFI 192
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTWSRGHIFDKSTC- 265
S G Q PTL V+R +I F PE YW L LT + +G A S ++ D T
Sbjct: 193 SVGRVQGPTLKLIVDREREIDAFDPEDYWELFSKLTKDADGDAESFEAQYFYLDDDGTEA 252
Query: 266 -NVFFKAVEKEKHVTVVDVQSS--------TKSKTKPQALNTVELMRVASSGLGMGPHHA 316
++ + +E + T++ V+++ T++ T P NT + +R A S +G A
Sbjct: 253 ERIWDEESAEEAYQTLLGVETAEVSSVNRRTRTDTPPAPFNTTQFIRAAGS-IGYSAQRA 311
Query: 317 MQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG 376
M IAE LYT GY++YPRT+ T YP++ D +L E + + +L +P +G
Sbjct: 312 MSIAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKEDAESLLEQEEIEPTEG 371
Query: 377 -KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM 434
+ DHPPI PT +L + + L D W +Y+ +VR F T+ D V+ V
Sbjct: 372 DNETTDHPPIHPTGELPSASDLSDDEWDVYELVVRRFFATVAEDAVWEHLRVVAGVEGLS 431
Query: 435 FTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
K LL G+ V + +PD + G+ + + + ++T PP +S LI
Sbjct: 432 LKANGKRLLEAGYHDVYPYFNSSESFVPDVEEGESLVLSDTHLDAKQTQPPRRYGQSRLI 491
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
ME+ GIGT A+ I + R Y+ R PT L +V + + +V M
Sbjct: 492 ETMEQMGIGTKATRHDVIQKLYDRGYIESDPPR---PTRLARAVVEASEDFAKLIVSEEM 548
Query: 555 RS 556
S
Sbjct: 549 TS 550
>gi|448561113|ref|ZP_21634465.1| DNA topoisomerase I [Haloferax prahovense DSM 18310]
gi|445721345|gb|ELZ73013.1| DNA topoisomerase I [Haloferax prahovense DSM 18310]
Length = 840
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 162/542 (29%), Positives = 244/542 (45%), Gaps = 36/542 (6%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+RMNG +V++W G + + GH++G+DF +YN+W V+P+EL P EK
Sbjct: 31 ERMNG-VNVYKWGGK--------RCIGLSGHVVGVDFPPEYNDWRDVEPVELIGAPVEKH 81
Query: 89 EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF 148
+ + + D D+EGE I E E VR ++N V R RF
Sbjct: 82 PTQENIVAALRRLARRAGT--VTIATDYDREGELIGKEAYELVR---DVNEDVPVDRVRF 136
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
S+IT +++ A N + A + +ARQ +DL G A TR F L I
Sbjct: 137 SSITKREVTEAFDNPDDLDFNLAAAGEARQIIDLVWGAALTR----FLSLSARQLGNDFI 192
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTW----------SR 256
S G Q PTL V+R +I F PE YW L LT + +G A S
Sbjct: 193 SVGRVQGPTLKLIVDREREIEAFDPEDYWELFSKLTKDADGDAESFEAQYFYLDDDGTEA 252
Query: 257 GHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHA 316
I+D+ + ++ + + V V T++ T P NT + +R A S +G A
Sbjct: 253 ERIWDEESAESAYQTLLGVEAAEVASVNRRTRTDTPPAPFNTTQFIRAAGS-IGYSAQRA 311
Query: 317 MQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG 376
M IAE LYT GY++YPRT+ T YP++ D +L E + + +L +P +G
Sbjct: 312 MSIAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKEDAESLLEQEEIEPTEG 371
Query: 377 -KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM 434
+ DHPPI PT +L + + L D W +Y+ +VR F T+ D V+ V
Sbjct: 372 DNETTDHPPIHPTGELPSASDLTEDEWDVYELVVRRFFATVAEDAVWEHLRVVAEVEGLS 431
Query: 435 FTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
K LL G+ V + +PD + G+ + + + ++T PP +S LI
Sbjct: 432 LKANGKRLLEAGYHDVYPYFNSSESFVPDVEEGESLVLSDTHLDAKQTQPPRRYGQSRLI 491
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
ME+ GIGT A+ I + R Y+ R PT L +V + + +V M
Sbjct: 492 ETMEQMGIGTKATRHDVIQKLYDRGYIESDPPR---PTRLARAVVEASEDFAKLIVSEEM 548
Query: 555 RS 556
S
Sbjct: 549 TS 550
>gi|448624140|ref|ZP_21670213.1| DNA topoisomerase I [Haloferax denitrificans ATCC 35960]
gi|445750107|gb|EMA01546.1| DNA topoisomerase I [Haloferax denitrificans ATCC 35960]
Length = 840
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 162/542 (29%), Positives = 244/542 (45%), Gaps = 36/542 (6%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+RMNG +V++W G + + GH++G+DF +YN+W V+P+EL P EK
Sbjct: 31 ERMNG-VNVYKWGGK--------RCIGLSGHVVGVDFPPEYNDWRDVEPVELIGAPVEKH 81
Query: 89 EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF 148
+ + + D D+EGE I E E VR ++N V R RF
Sbjct: 82 PTQENIVAALRRLARRAG--KVTIATDYDREGELIGKEAYELVR---DVNEDVPVDRVRF 136
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
S+IT +++ A N + A + +ARQ +DL G A TR F L I
Sbjct: 137 SSITKREVTEAFENPDDLDFNLAAAGEARQIIDLVWGAALTR----FLSLSARQLGNDFI 192
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTW----------SR 256
S G Q PTL V+R +I F PE YW L LT + +G A S
Sbjct: 193 SVGRVQGPTLKLIVDREREIEAFDPEDYWELFSKLTKDADGDAESFEAQYFYLDDDGTEA 252
Query: 257 GHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHA 316
I+D+ + ++ + + V V T++ T P NT + +R A S +G A
Sbjct: 253 ERIWDEESAESAYQTLLGVEAAEVASVNRRTRTDTPPAPFNTTQFIRAAGS-IGYSAQRA 311
Query: 317 MQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG 376
M IAE LYT GY++YPRT+ T YP++ D +L E + + +L +P +G
Sbjct: 312 MSIAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKEDAESLLEQEEIEPTEG 371
Query: 377 -KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM 434
+ DHPPI PT +L + + L D W +Y+ +VR F T+ D V+ V
Sbjct: 372 DNETTDHPPIHPTGELPSASDLTDDEWDVYELVVRRFFATVAEDAVWEHLRVVAEVEGLS 431
Query: 435 FTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
K LL G+ V + +PD + G+ + + + ++T PP +S LI
Sbjct: 432 LKANGKRLLEAGYHDVYPYFNSTESFVPDVEEGESLVLSDTHLDAKQTQPPRRYGQSRLI 491
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
ME+ GIGT A+ I + R Y+ R PT L +V + + +V M
Sbjct: 492 ETMEQMGIGTKATRHDVIQKLYDRGYIESDPPR---PTRLARAVVEASEDFAKLIVSEEM 548
Query: 555 RS 556
S
Sbjct: 549 TS 550
>gi|399575540|ref|ZP_10769298.1| DNA topoisomerase i [Halogranum salarium B-1]
gi|399239808|gb|EJN60734.1| DNA topoisomerase i [Halogranum salarium B-1]
Length = 843
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 156/516 (30%), Positives = 238/516 (46%), Gaps = 44/516 (8%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+RMNG +V++W G + + GH++G+DF ++YN+W V+P+EL P +K
Sbjct: 31 ERMNG-VNVYKWGGK--------RCIGLSGHVVGVDFPAEYNDWRDVEPVELIDAPIDKH 81
Query: 89 EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF 148
+ + A L A+ +V+ D D+EGE I E E VR +N + R RF
Sbjct: 82 PT--QENIVAALRRLARKAGNVVIATDYDREGELIGKEAYELVRE---VNEDVNIDRVRF 136
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
S+IT +++ A N + A + +ARQ +DL G A TR F L I
Sbjct: 137 SSITKREVTDAFENPDDLDFDLAAAGEARQVIDLVWGAALTR----FLSLSARQLGNDFI 192
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRG----------- 257
S G Q PTL V+R +I F PE YW +L +L A S T +
Sbjct: 193 SVGRVQGPTLKLIVDREREIDAFDPEDYW--ELFADLEKSAESATDADEVDDESFESQYF 250
Query: 258 ----------HIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASS 307
++D+ + F+ ++ E TV V T++ P NT + +R A S
Sbjct: 251 YLDEDDNEAERVWDEESATKAFETLQSESSATVTSVNRRTRTDEPPAPFNTTQFIRAAGS 310
Query: 308 GLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLS 367
+G AM IAE LYT GY++YPRT+ T YPE+ D +L S + D +L
Sbjct: 311 -IGYSAQRAMSIAEDLYTAGYITYPRTDNTHYPEDLDPRELLDAFTGSSTFSDDAESLLD 369
Query: 368 NGISKPRKG-KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKV 425
+P G K+ DHPPI PT +L + + L D +Y+ +VR F T+ +
Sbjct: 370 QEEIEPTTGDKETTDHPPIHPTGELPSASDLSEDEHDVYELVVRRFFATVAEAAKWEHLR 429
Query: 426 AKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPP 485
VA K L+ G+ V + +PD + G+ + + ++ ++T PP
Sbjct: 430 VVADVAGLSLKANGKRLIKEGYHAVYPYFNNTESFVPDVEEGEELAVTDTRIEAKQTQPP 489
Query: 486 DYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
+S LI ME+ GIGT A+ I + R Y+
Sbjct: 490 RRYGQSRLIETMEQMGIGTKATRHDVIQKLYDRGYI 525
>gi|116192151|ref|XP_001221888.1| hypothetical protein CHGG_05793 [Chaetomium globosum CBS 148.51]
gi|88181706|gb|EAQ89174.1| hypothetical protein CHGG_05793 [Chaetomium globosum CBS 148.51]
Length = 680
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 154/486 (31%), Positives = 234/486 (48%), Gaps = 47/486 (9%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLA 101
GP +G + MT+V GH+ ++F S Y W+ P LF P + +
Sbjct: 46 GPPWGHCSV-TMTAVKGHLTTVEFPSDYKQWEYPPPDRLFDAPVLTVIPPDNKSIAKNIE 104
Query: 102 NEAKDCEFLVLWLD--CDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
++A+ + LD ++GE R + N N + RARFS I + A
Sbjct: 105 DQARRARW-ACHLDRFAIEKGETHRKARSGLPRGKGNSNI--QIKRARFSNIEKSQVDA- 160
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
V AR ELDLRIG AFTR+ T + G L +SYG CQ PTLG
Sbjct: 161 --------------VSARIELDLRIGYAFTRFLTLNLRPLGGPLSKLTLSYGSCQFPTLG 206
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
F V+R+ +++ F PE +W + + + + V+ WSR +FD+ + +F++ +
Sbjct: 207 FVVDRYFRVKNFVPETFWGIKMMHERDDIKVNFNWSRHRLFDRMSVVIFYERCLAARTAK 266
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQY 339
V VQ K KP L TVE+ ++A+ L M AM +AE+LY +G++SYPRTET ++
Sbjct: 267 VTKVQEKPTKKWKPLPLTTVEMQKMATRFLRMTGQQAMTVAEKLYNKGFISYPRTETDRF 326
Query: 340 PENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDG 398
+ DL A++R+Q WG + ++ G +PR+G+ D HPPI P A LD
Sbjct: 327 DKGMDLRALVRKQTQDNRWGAFAQNLVDGGFQQPRQGRHDDKAHPPIHPITYAAAGALDD 386
Query: 399 DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYL-LHP--GFTGVMTWSA 455
R+Y+ + GD + A + + YL ++P +TG
Sbjct: 387 SERRVYELVA-------YGDEAFH--------AHGVIVLARNYLDVYPYENWTGTAQLPR 431
Query: 456 MKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNI 515
+ + P P + E KT PP YLTE++LI+LM+ +GIGTDA++ HI I
Sbjct: 432 LHASASASSPP---RPCST----EGKTGPPGYLTEADLIALMDANGIGTDATMAEHIEKI 484
Query: 516 CQRNYV 521
+R Y
Sbjct: 485 QERQYA 490
>gi|292654846|ref|YP_003534743.1| DNA topoisomerase I [Haloferax volcanii DS2]
gi|448292935|ref|ZP_21483256.1| DNA topoisomerase I [Haloferax volcanii DS2]
gi|448597061|ref|ZP_21654199.1| DNA topoisomerase I [Haloferax alexandrinus JCM 10717]
gi|291370931|gb|ADE03158.1| DNA topoisomerase I [Haloferax volcanii DS2]
gi|445571910|gb|ELY26453.1| DNA topoisomerase I [Haloferax volcanii DS2]
gi|445740942|gb|ELZ92447.1| DNA topoisomerase I [Haloferax alexandrinus JCM 10717]
Length = 840
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 163/542 (30%), Positives = 251/542 (46%), Gaps = 36/542 (6%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+RMNG +V++W G + + GH++G+DF +YN+W V+P+EL P EK
Sbjct: 31 ERMNG-VNVYKWGGK--------RCIGLSGHVVGVDFPPEYNDWRDVEPVELIGAPVEKH 81
Query: 89 EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF 148
+ + + D D+EGE I E E VR ++N V R RF
Sbjct: 82 PTQENIVAALRRLARRAG--KVTIATDYDREGELIGKEAYELVR---DVNEDVPVDRVRF 136
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
S+IT++++ A N + A + +ARQ +DL G A TR F L I
Sbjct: 137 SSITNREVTEAFENPDDLDFDLAAAGEARQIIDLVWGAALTR----FLSLSARQLGNDFI 192
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTWSRGHIFDKSTC- 265
S G Q PTL V+R +I F PE YW L LT + +G A S ++ D T
Sbjct: 193 SVGRVQGPTLKLIVDREREIDAFDPEDYWELFSKLTKDADGDAESFEAQYFYLDDDGTEA 252
Query: 266 -NVFFKAVEKEKHVTVVDVQSS--------TKSKTKPQALNTVELMRVASSGLGMGPHHA 316
++ + +E + T++ V+++ T++ T P NT + +R A S +G A
Sbjct: 253 ERIWDEDDAEEAYQTLLGVEAAEVSSVNRRTRTDTPPAPFNTTQFIRAAGS-IGYSAQRA 311
Query: 317 MQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG 376
M IAE LYT GY++YPRT+ T YP++ D +L E + + +L +P +G
Sbjct: 312 MSIAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKEDAESLLEQEEIEPTEG 371
Query: 377 -KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM 434
+ DHPPI PT +L + + L D W +Y+ +VR F T+ D V+ V
Sbjct: 372 DNETTDHPPIHPTGELPSASDLSDDEWDVYELVVRRFFATVAEDAVWEHLRVVAEVEGLS 431
Query: 435 FTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
K LL G+ V + +PD + G+ + + + ++T PP +S LI
Sbjct: 432 LKANGKRLLEAGYHDVYPYFNSSESFVPDVEEGESLVLSDTHLDAKQTQPPRRYGQSRLI 491
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
ME+ GIGT A+ I + R Y+ R PT L +V + + +V M
Sbjct: 492 ETMEQMGIGTKATRHDVIQKLYDRGYIESDPPR---PTRLARAVVEASEDFAKLIVSEEM 548
Query: 555 RS 556
S
Sbjct: 549 TS 550
>gi|448572840|ref|ZP_21640601.1| DNA topoisomerase I [Haloferax lucentense DSM 14919]
gi|445719612|gb|ELZ71291.1| DNA topoisomerase I [Haloferax lucentense DSM 14919]
Length = 840
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 163/542 (30%), Positives = 250/542 (46%), Gaps = 36/542 (6%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+RMNG +V++W G + + GH++G+DF +YN+W V+P+EL P EK
Sbjct: 31 ERMNG-VNVYKWGGK--------RCIGLSGHVVGVDFPPEYNDWRDVEPVELIGAPVEKH 81
Query: 89 EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF 148
+ + + D D+EGE I E E VR +N V R RF
Sbjct: 82 PTQENIVAALRRLARRAG--KVTIATDYDREGELIGKEAYELVR---GVNEDVPVDRVRF 136
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
S+IT++++ A N + A + +ARQ +DL G A TR F L I
Sbjct: 137 SSITNREVTEAFENPDDLDFDLAAAGEARQIIDLVWGAALTR----FLSLSARQLGNDFI 192
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTWSRGHIFDKSTC- 265
S G Q PTL V+R +I F PE YW L LT + +G A S ++ D T
Sbjct: 193 SVGRVQGPTLKLIVDREREIDAFDPEDYWELFSKLTKDADGDAESFEAQYFYLDDDGTEA 252
Query: 266 -NVFFKAVEKEKHVTVVDVQSS--------TKSKTKPQALNTVELMRVASSGLGMGPHHA 316
++ + +E + T++ V+++ T++ T P NT + +R A S +G A
Sbjct: 253 ERIWDEDDAEEAYQTLLGVEAAEVSSVNRRTRTDTPPAPFNTTQFIRAAGS-IGYSAQRA 311
Query: 317 MQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG 376
M IAE LYT GY++YPRT+ T YP++ D +L E + + +L +P +G
Sbjct: 312 MSIAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKEDAESLLEQEEIEPTEG 371
Query: 377 -KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM 434
+ DHPPI PT +L + + L D W +Y+ +VR F T+ D V+ V
Sbjct: 372 DNETTDHPPIHPTGELPSASDLSDDEWDVYELVVRRFFATVAEDAVWEHLRVVAEVEGLS 431
Query: 435 FTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
K LL G+ V + +PD + G+ + + + ++T PP +S LI
Sbjct: 432 LKANGKRLLEAGYHDVYPYFNSSESFVPDVEEGESLVLSDTHLDAKQTQPPRRYGQSRLI 491
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
ME+ GIGT A+ I + R Y+ R PT L +V + + +V M
Sbjct: 492 ETMEQMGIGTKATRHDVIQKLYDRGYIESDPPR---PTRLARAVVEASEDFAKLIVSEEM 548
Query: 555 RS 556
S
Sbjct: 549 TS 550
>gi|414864982|tpg|DAA43539.1| TPA: hypothetical protein ZEAMMB73_751776 [Zea mays]
Length = 329
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 113/272 (41%), Positives = 160/272 (58%), Gaps = 8/272 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+M L+F ++ W DP ELF P K K + L EA+ C++LVL
Sbjct: 61 VTSVTGHLMELEFDDRFRRWHSCDPAELFHAPVRKSVPQDKQAIKQTLEEEARRCQWLVL 120
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGENI +EV++ NS +WRARFSA+ D++I ++ +L +PN A
Sbjct: 121 WLDCDREGENIAYEVIDVC---TRANSHLNIWRARFSALIDREIHESVQHLGRPNKLFAD 177
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKY-----GDLDASLISYGPCQTPTLGFCVERHDK 227
+VDARQE+DLRIG +FTR+QT + + GD + ++SYGPCQ PTLGF VER +
Sbjct: 178 AVDARQEIDLRIGASFTRFQTMLLKDAFVIDVTGDERSLVLSYGPCQFPTLGFIVERFWE 237
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
I+ +PE +W ++ T + S W RGH+FD S ++ E TV +V++
Sbjct: 238 IQAHEPEEFWTINCTHTSDEGTASFGWIRGHLFDYSCAISIYEMCVSEPMATVQNVRNQE 297
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQI 319
K K P L+TVEL + AS M H M++
Sbjct: 298 KLKYPPYPLSTVELQKRASRYFRMSSEHTMKV 329
>gi|448310602|ref|ZP_21500418.1| DNA topoisomerase I [Natronolimnobius innermongolicus JCM 12255]
gi|445607749|gb|ELY61625.1| DNA topoisomerase I [Natronolimnobius innermongolicus JCM 12255]
Length = 827
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 157/536 (29%), Positives = 251/536 (46%), Gaps = 33/536 (6%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF S+Y++W V+P+EL EK
Sbjct: 28 RENGV-NVYEWGGK--------RCVGLSGHVVGVDFPSEYSDWRDVEPVELIDAEVEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L A+ E + + D D+EGE I E E VR ++N + R RFS
Sbjct: 77 TATKENIVATLRILARKAERVTIATDYDREGELIGKEAYEIVR---DVNEDVPIRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ ++++A + A + +ARQ +DL G A TR F G L IS
Sbjct: 134 SITENEVQSAFDEPEDLDFDLAAAGEARQIIDLVWGAALTR----FLSLSAGQLGNDFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW--------SRGHIFD 261
G Q+PTL V+R +I+ F PE YW L L + + +++
Sbjct: 190 VGRVQSPTLKLIVDREREIQAFDPETYWELFADLTKDETTFEAQYFYRDEDDNEAERVWE 249
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
++ ++ ++ TVVDV T++ T P NT + +R A + +G AM IAE
Sbjct: 250 EAAATEVYETLDDSDAATVVDVNRRTRTDTPPTPFNTTQFIRAAGA-IGYSAKRAMSIAE 308
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVL-SNGISKPRKGKDVG 380
LYT GY++YPRT+ T Y ++ DL +L P G+ +L ++ I ++
Sbjct: 309 DLYTAGYITYPRTDNTVYSDDLDLEELLDDFVGHPTLGESAESLLEADEIVATEGDEETT 368
Query: 381 DHPPITPT-KLATRT-QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
DHPPI PT ++ +R + D W +Y+ +VR F T+ V+ V D
Sbjct: 369 DHPPIHPTGEIPSRGGDVSDDEWEVYELVVRRFYATVAEAAVWEHLKVVTEVDDSRLKSN 428
Query: 439 AKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
K L+ G+ V + +PD G+ + + V++ E++T PP +S LI ME
Sbjct: 429 GKRLVEAGYHDVYPYFNTSENYVPDVDEGEELALTDVELEEKETQPPRRYGQSRLIETME 488
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
G+GT ++ + + R Y+ R PT L + +V + +V M
Sbjct: 489 DQGLGTKSTRHNTLEKLYDRGYIESDPPR---PTKLAMAVVDAAENYADRVVSEEM 541
>gi|448412916|ref|ZP_21576807.1| DNA topoisomerase I [Halosimplex carlsbadense 2-9-1]
gi|445667618|gb|ELZ20259.1| DNA topoisomerase I [Halosimplex carlsbadense 2-9-1]
Length = 863
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 156/518 (30%), Positives = 241/518 (46%), Gaps = 33/518 (6%)
Query: 26 TPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPT 85
T QR NG +V+EW L + GH++G+DF +Y++W V+P+EL
Sbjct: 25 TTTQR-NG-VNVYEWG--------LTTCVGLSGHVVGVDFPEEYSDWRDVEPVELIDADI 74
Query: 86 EKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWR 145
K + + + L A++ + + D D+EGE I E E +R + + V R
Sbjct: 75 VK--SPTQENIVRTLRQLAREADEATIATDYDREGELIGKEAYELIREETD----APVKR 128
Query: 146 ARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDA 205
RFS+IT++++K+A + A + +ARQ +DL G A TR F L
Sbjct: 129 VRFSSITEREVKSAFDEPDDIDFDLAAAGEARQVIDLVWGAALTR----FLSLSARQLGQ 184
Query: 206 SLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-------SRGH 258
IS G Q+PTL V+R +I+ F PE YW L L +G +
Sbjct: 185 DFISVGRVQSPTLKLIVDREREIQAFDPEDYWELFADLAKDGETFEAQYFYDDDGSEAER 244
Query: 259 IFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQ 318
++D++ + + + + V V+ T++ P NT + A S LG AM
Sbjct: 245 VWDEADADEAHERLREATSAEVTSVRRRTRTDNPPAPFNTTAFISAAGS-LGYSAQRAMS 303
Query: 319 IAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKD 378
IAE LYT GY++YPRT+ T YPE+ D +L + + ++GD +L +P +G D
Sbjct: 304 IAEELYTTGYITYPRTDNTVYPEDLDPEELLDEFTMTHEFGDDAESLLERDEIEPTEGDD 363
Query: 379 -VGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFT 436
DHPPI PT + R +LD D W +Y+ +VR F T+ + +
Sbjct: 364 ETTDHPPIHPTGAVPDRDELDEDEWEVYELVVRRFFATVAEAATWEHLRVVAAANGCQLK 423
Query: 437 MEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISL 496
K LL G+ V +S+ +P + GD + + V++ ++T PP +S LI
Sbjct: 424 ATGKRLLEAGYHDVYPYSSASESFLPPVEEGDALDVTDVELEAKQTQPPRRYGQSRLIQQ 483
Query: 497 MEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSL 534
ME GIGT A+ I + R Y+ R PTSL
Sbjct: 484 MEDMGIGTKATRHNVIEKLYDRGYIESDPPR---PTSL 518
>gi|16081238|ref|NP_393542.1| DNA topoisomerase I [Thermoplasma acidophilum DSM 1728]
gi|14423969|sp|Q9HM08.1|TOP1_THEAC RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|10639209|emb|CAC11211.1| DNA topoisomerase III beta related protein [Thermoplasma
acidophilum]
Length = 770
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 152/505 (30%), Positives = 253/505 (50%), Gaps = 26/505 (5%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEK--REATPKLKLPAFLANEAKDCEFL 110
+ + GHI+ DF S Y++W+K+D +L K + L AF E +
Sbjct: 49 LIPLSGHIVEADFESGYSDWNKIDLSDLIDARIVKNIKNKVAYQTLQAFRGK----VEEI 104
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
V+ D D+EGE I E ++ ++ + + RA+FSA+T +I + NL+ N
Sbjct: 105 VIATDYDREGELIGVEALDIIKE-----GKEEIRRAKFSALTKNEILDSFKNLIGVNYSL 159
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
A + DAR+ +DL G TR FF G L S +S G QTPTL V+R +I++
Sbjct: 160 ADAADARESIDLIWGSVLTR----FFSVTTGRLGKSFLSAGRVQTPTLAIVVDREREIQS 215
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
F+PE YW + +T + +G + +I D+ T ++A+ K K+ V S
Sbjct: 216 FRPERYWTISITFDKDG-QFKARYPE-NIKDQDTAEKIYEAI-KGKNGRVSSYTSKEDHI 272
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
+P +T E +R AS +G+ P AM IAE LY +G +SYPRT+ T YP + +L +VL+
Sbjct: 273 RRPAPFSTTEFLREASR-IGIMPTKAMSIAENLYMRGLISYPRTDNTVYPRSINLKSVLK 331
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVR 409
+ E++ + +V+E+ + P +G+ + DHPPI P + + QL GD R+YD I+R
Sbjct: 332 KLENTA-YSKYVKEIETFDRILPSRGRIETTDHPPIYPVD-SPKEQLKGDYGRVYDLILR 389
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDL 469
HF+ TL D T A+ V F ++ G+T + + K+ +P+ G+
Sbjct: 390 HFLSTLYRDGKKTVAEAEIYVNGYTFKAAGQHTTDRGWTEIYGYDP-KDVYLPELTEGED 448
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRL 529
+ + +T PP S L+ ME+ +GT ++ I + +R ++ G +
Sbjct: 449 LKAIDWNIQREETKPPPRYDMSSLLKKMEELNLGTKSTRHDIIGKLIERGFI---EGNPV 505
Query: 530 VPTSLGIVLVHGYQKIDRELVEPTM 554
PT LG+ + + ++ + +P M
Sbjct: 506 KPTPLGMAFIDAVRSVNSHIADPEM 530
>gi|148706738|gb|EDL38685.1| topoisomerase (DNA) III alpha [Mus musculus]
Length = 698
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 118/280 (42%), Positives = 169/280 (60%), Gaps = 3/280 (1%)
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
TVV+V+S KSK +PQAL+TVEL ++AS L + M+IAE+LYTQGY+SYPRTET
Sbjct: 4 ATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETN 63
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQL 396
+P++ +LVA++ QQ P WG + +L G PR G K HPPI PTK + L
Sbjct: 64 IFPKDLNLVALVEQQTVDPHWGAFAQTILERGGPTPRNGSKSDQAHPPIHPTKYTS--GL 121
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM 456
GD RLY++IVRHF+ D + + +A E F +L + V +
Sbjct: 122 QGDDRRLYEFIVRHFLACCSQDAQGQETTVEIDIAQERFVAHGLIILARNYLDVYPYDHW 181
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
++ +P ++ G +V+MV+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I
Sbjct: 182 SDKLLPVYEQGSHFQPSTVEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIK 241
Query: 517 QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
R YV +TS +R +P LG+ LV GY + E+ +P +R+
Sbjct: 242 ARMYVGLTSDKRFLPGHLGMGLVEGYDSMGYEMSKPDLRA 281
>gi|448476502|ref|ZP_21603588.1| DNA topoisomerase I [Halorubrum aidingense JCM 13560]
gi|445815365|gb|EMA65290.1| DNA topoisomerase I [Halorubrum aidingense JCM 13560]
Length = 878
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 164/544 (30%), Positives = 258/544 (47%), Gaps = 77/544 (14%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+R N +V++W G + + GH++G+DF ++YN+W V+P+EL P K
Sbjct: 31 ERQND-VNVYKWGGK--------RCIGLSGHVVGVDFPAEYNDWRDVEPVELIDAPVTK- 80
Query: 89 EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF 148
E T + + A L A++ +V+ D D+EGE I E E VR ++N ++P + R RF
Sbjct: 81 EPTQE-GIVAALRKLARNASRVVIATDYDREGELIGKEAYELVR-EVNEDAP--IDRVRF 136
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
S+ITD +++ A N + + A + +ARQ +DL G A TR+ + + GD I
Sbjct: 137 SSITDNEVQEAFANPDELDFDLAAAGEARQVIDLTWGAALTRFLS-LSARQLGD---DFI 192
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLT-------------LNLNGVAVSVT 253
S G Q PTL V+R +I+ F PE YW L +LT LN G
Sbjct: 193 SVGRVQGPTLKLIVDREREIKAFDPEAYWELYGNLTKSGGDPFEARYFYLNDEGNEAERV 252
Query: 254 WSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGP 313
W D + +A+ + V DV+ T++ P NT +R A S LG
Sbjct: 253 W------DGDVAEILTEALNAAEEAVVDDVRRRTRTDEPPTPFNTTAFIRAAGS-LGYSA 305
Query: 314 HHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVL-SNGISK 372
AM +AE LYT GYV+YPRT+ T YPE+ D ++ + ++ +G + +L ++ +
Sbjct: 306 QRAMSLAEDLYTAGYVTYPRTDNTVYPEDLDPRELIEELSAASTFGSDAKGLLDADREIE 365
Query: 373 PRKG-KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGD-----------L 419
P +G K+ DHPPI PT +L + + L D W +Y+ IVR F+ T C + L
Sbjct: 366 PTEGDKETTDHPPIHPTGELPSASDLSEDEWEVYELIVRRFLAT-CAEPATWERLRVVAL 424
Query: 420 VYTQKVAKFSVADEMFTM----------------------EAKYLLHPGFTGVMTWSAMK 457
+ A AD + + K LL G+ V + +
Sbjct: 425 ANGEASAIAERADGLAALRDPDEAAGPGDLAADGGLRLKANGKRLLEAGYHDVYPYRSSD 484
Query: 458 NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQ 517
+PD + G+ + + + ++T PP +S LI MEK G+GT A+ + +
Sbjct: 485 ERIVPDVEVGETLALDDRRTEAKETQPPRRYGQSRLIEEMEKRGVGTKATRHRTLEKLYD 544
Query: 518 RNYV 521
RNY+
Sbjct: 545 RNYI 548
>gi|302336222|ref|YP_003801429.1| DNA topoisomerase I [Olsenella uli DSM 7084]
gi|301320062|gb|ADK68549.1| DNA topoisomerase I [Olsenella uli DSM 7084]
Length = 839
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 150/462 (32%), Positives = 224/462 (48%), Gaps = 25/462 (5%)
Query: 91 TPKLKLPA------FLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVW 144
P KLPA L N AK + +V+ D D+EGE I + + +R Q+ + P V
Sbjct: 122 APIEKLPAERGIIRALKNLAKKADSIVIGTDFDREGELIGSDALRQMR-QVAPDVP--VS 178
Query: 145 RARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLD 204
RAR+SA T +I A NLV + A + ++RQ +DL G TRY T G +G++
Sbjct: 179 RARYSAFTKAEIDHAFANLVDLDQDLADAGESRQYIDLIWGAVLTRYLTMARFGGFGNVR 238
Query: 205 ASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVA-----VSVTWSRGHI 259
S G QTPTL VE+ + + F PE YW+L L G A T +
Sbjct: 239 ----SAGRVQTPTLALVVEKERERQAFVPEDYWVLSGMLAPAGTADEDARFKATHTTARF 294
Query: 260 FDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQI 319
D++ + V + TV V+ +++ P NT L A+S G+ P M++
Sbjct: 295 KDQAAAQAAWSHVRDARTATVTAVEKRSRTTRPPAPFNTTSLQTAAASE-GISPARTMRL 353
Query: 320 AERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-D 378
AE LY G +SYPR + T YP++ DL +R P + RE+L G +GK +
Sbjct: 354 AESLYMDGLISYPRVDNTVYPKSLDLRGCVRMLSQVPQYRAACRELLDAGPLHATRGKQE 413
Query: 379 VGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
DHPPI PT A +L+G AW+LY+ I R F+ TL V F V+ E F+
Sbjct: 414 TTDHPPIYPTAAADPGKLEGAAWKLYNLIARRFLATLSQASVSEGTKVAFDVSGEPFSAS 473
Query: 439 AKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
L+ PGF + + K+E +P + GD + S+ + ++T PP ++ LI ME
Sbjct: 474 GTVLVKPGFRAIYPYGLRKDEQLPPLEVGDSCDVVSMALDAKQTEPPARYSQGRLIQEME 533
Query: 499 KHGIGTDASIPVHINNICQRNY-VTVTSGRRLVPTSLGIVLV 539
K +GT ++ +I QR Y V + P+ LG+ ++
Sbjct: 534 KRNLGTKST----RASIIQRLYDVKYLKNDPVEPSQLGMAVI 571
>gi|222478697|ref|YP_002564934.1| DNA topoisomerase type IA central domain protein [Halorubrum
lacusprofundi ATCC 49239]
gi|222451599|gb|ACM55864.1| DNA topoisomerase type IA central domain protein [Halorubrum
lacusprofundi ATCC 49239]
Length = 864
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 160/536 (29%), Positives = 250/536 (46%), Gaps = 75/536 (13%)
Query: 36 SVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK 95
+V++W G + + GH++G+DF ++YN+W V+P+EL P K E T +
Sbjct: 37 NVYKWGGK--------RCIGLSGHVVGVDFPAEYNDWRDVEPVELIDAPITK-EPTQE-G 86
Query: 96 LPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKD 155
+ A L A++ +V+ D D+EGE I E E VR ++N ++P + R RFS+ITD +
Sbjct: 87 IVAALRKLARNASRVVIATDYDREGELIGKEAYELVR-EVNEDAP--IDRVRFSSITDNE 143
Query: 156 IKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQT 215
+ A N + + A + +ARQ +DL G A TR F L IS G Q
Sbjct: 144 VNEAFANPDELDFDLAAAGEARQVIDLTWGAALTR----FLSLSARQLGEDFISVGRVQG 199
Query: 216 PTLGFCVERHDKIRTFKPEPYWLL--DLT-------------LNLNGVAVSVTWSRGHIF 260
PTL V+R +I+ F PE YW L +LT LN G W+
Sbjct: 200 PTLKLIVDREREIKAFDPEAYWELYGNLTKSGGDPFEARYFYLNDEGNEAERVWN----- 254
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
V +A + V DV+ T++ P NT +R A S LG AM +A
Sbjct: 255 -GDVAEVLTEAFDAADEAVVDDVRRRTRTDDPPTPFNTTAFIRAAGS-LGHSAQRAMSLA 312
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDV 379
E LYT GYV+YPRT+ T YPE+ D ++ + + +G + +L +P +G ++
Sbjct: 313 EDLYTAGYVTYPRTDNTVYPEDLDPRELIEELSVASTFGKDAKSLLEQEEIEPTEGDEET 372
Query: 380 GDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
DHPPI PT +L + + L D W +Y+ IVR F+ T C + +++ ++A++ T
Sbjct: 373 TDHPPIHPTGELPSASDLSEDEWEVYELIVRRFLAT-CAEPATWERLRVVALANDEATAI 431
Query: 439 A---------------------------------KYLLHPGFTGVMTWSAMKNESIPDFK 465
A K LL G+ V + + +PD +
Sbjct: 432 AERADGLAALRNPEEASGPGDLVADGGLRLKANGKRLLEAGYHDVYPYRSSDERIVPDVE 491
Query: 466 PGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
G+ + + + ++T PP +S LI MEK G+GT A+ + + RNY+
Sbjct: 492 VGETLALTDRRTDAKETQPPRRYGQSRLIEEMEKRGVGTKATRHRTLEKLYDRNYI 547
>gi|330506959|ref|YP_004383387.1| DNA topoisomerase I [Methanosaeta concilii GP6]
gi|328927767|gb|AEB67569.1| DNA topoisomerase I [Methanosaeta concilii GP6]
Length = 766
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 152/511 (29%), Positives = 246/511 (48%), Gaps = 24/511 (4%)
Query: 45 FGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEA 104
F D V+ ++ GHI+G+D+ YNNW KVD EL R K+ L +
Sbjct: 37 FDDKVVMGLS---GHIVGVDYPPGYNNWQKVDCKELIRAEIVVRPINDKIV--NALRSLG 91
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLV 164
K+ + + + D D+EGE I E ++ + N R R+SAI +I A N
Sbjct: 92 KEADRITVATDYDREGELIGVEALKIAKEA---NPRLREDRVRYSAIVKDEILKAFKNAG 148
Query: 165 KPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVER 224
K + A S +ARQ +DL G A TRY G L +S G Q+PTL V+R
Sbjct: 149 KVDYDLAASGEARQIIDLVWGAALTRY----ISLTSGRLGKEFLSVGRVQSPTLALIVDR 204
Query: 225 HDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV-DV 283
+I++F P+PYW + L + + V +RG I++K + V + V ++ +
Sbjct: 205 EKEIQSFVPKPYWEIYADLERD---LRVQHARGRIWEKDEVDSI---VARLGPVGIIRSI 258
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
Q+ + + P +T + A+SG+G +AM+IAE LY G++SYPRT+ T YP +
Sbjct: 259 QTKPRVEKPPAPFDTTSFIS-AASGIGFSAANAMRIAEWLYVNGFISYPRTDNTVYPPSI 317
Query: 344 DLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRL 403
DLVA+ R ++ ++L + R + DHPPI PT +++L + W++
Sbjct: 318 DLVALTRLFLKG-EFSKEAEKLLGGKMVPTRGKRSTTDHPPIYPTAPVNKSELKEEQWKI 376
Query: 404 YDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPD 463
Y+ +VR F TL V+ K + E F L+ PG+ +S + +P
Sbjct: 377 YELVVRRFFATLAESCVWDATSLKVDIGPEPFRASGARLVEPGWRYYYPYSKAEERILPA 436
Query: 464 FKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV 523
K G+ + + + ++T PP + +LI LM++ G+GT ++ I+ + R YV
Sbjct: 437 LKEGERLRVLGHSVEAKETQPPARYGQGKLIKLMDELGLGTKSTRHDIISKLYARAYV-- 494
Query: 524 TSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
G + PT+ +V QK + +P M
Sbjct: 495 -QGNPMRPTNTAYAVVDTLQKYAPTITKPEM 524
>gi|402828130|ref|ZP_10877021.1| DNA topoisomerase I [Slackia sp. CM382]
gi|402286731|gb|EJU35193.1| DNA topoisomerase I [Slackia sp. CM382]
Length = 836
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 147/488 (30%), Positives = 233/488 (47%), Gaps = 18/488 (3%)
Query: 70 NNWDKVDPLELFS-CPTEKREATPKLK-LPAFLANEAKDCEFLVLWLDCDKEGENICFEV 127
N W K+D L + P EK PK K + L N AK + +++ D D+EGE I +
Sbjct: 106 NTW-KMDTLPYLTYAPIEK---LPKEKDIIRSLKNLAKKADEIIIATDFDREGELIGSDA 161
Query: 128 MEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCA 187
+ + ++N ++P V RAR+SA T +I+ A +LV ++ A++ ++RQ++DL G
Sbjct: 162 LSCI-QEVNPDAP--VARARYSAFTKPEIEHAFSHLVPLDVNLAQAGESRQDIDLIWGAV 218
Query: 188 FTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNG 247
TR+ T YG++ +S G QTPTL V R + F PE YW++
Sbjct: 219 LTRFLTIVKFAGYGNVRSS----GRVQTPTLALIVARERERMAFVPEDYWVVKGLFADGA 274
Query: 248 VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASS 307
T+++ I DK+ + VE V ++ ++ P NT LM A++
Sbjct: 275 DEFEATYAQKRISDKAQADAVMAHVEGVDSARVSAIEKRRRTIAPPAPFNTTSLM-AAAA 333
Query: 308 GLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLS 367
G+ P M++AE LY G +SYPR + T YP++ DL V+R P + + +++LS
Sbjct: 334 NEGLSPARTMRLAESLYMAGIISYPRVDNTVYPDSLDLADVVRVLSKVPAYAPYCQKLLS 393
Query: 368 NG-ISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVA 426
G +S R ++ DHPPI PT A LD W+LY+ I R F+ TL +
Sbjct: 394 KGALSATRGKQETTDHPPIYPTAPADPDSLDPAQWKLYNLIARRFLATLSESAITENTKV 453
Query: 427 KFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPD 486
F V E F PGF + + K+ +P + G + + +++T PP
Sbjct: 454 TFDVNSEPFDTSGVITQKPGFRAIYPYGRKKDVQLPPLEQGQTVDFKGAACEKKQTQPPA 513
Query: 487 YLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKID 546
++ LI MEK G+GT A+ I + Q Y+ + P+ LGI + K
Sbjct: 514 RYSQGVLIQEMEKLGLGTKATRASMIERLYQVKYI---QNDPIEPSQLGIAVCDALGKFA 570
Query: 547 RELVEPTM 554
++ P M
Sbjct: 571 PQITSPDM 578
>gi|448481877|ref|ZP_21605192.1| DNA topoisomerase I [Halorubrum arcis JCM 13916]
gi|445821576|gb|EMA71365.1| DNA topoisomerase I [Halorubrum arcis JCM 13916]
Length = 865
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 165/539 (30%), Positives = 253/539 (46%), Gaps = 67/539 (12%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+RMN +V+EW G + + GH++G+DF ++YN+W V+P+EL P K
Sbjct: 31 ERMND-VNVYEWGGK--------RCIGLSGHVVGVDFPAEYNDWRDVEPVELIDAPVTK- 80
Query: 89 EATPKLK-LPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRAR 147
TP + + A L A++ +V+ D D+EGE I E E VR ++N + P V R R
Sbjct: 81 --TPTQEGIVAALRRLARNASRVVIATDYDREGELIGKEAYELVR-EVNEDVP--VDRVR 135
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+IT+ +++ A N + A + +ARQ +DL G A TR+ + + GD
Sbjct: 136 FSSITENEVQEAFANPDDLDFELAAAGEARQTIDLTWGAALTRFLS-LSARQLGD---DF 191
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNG---------VAVSVTWSRGH 258
IS G Q PTL V+R +I+ F PE YW L L +G R
Sbjct: 192 ISVGRVQGPTLKLIVDREREIQAFDPESYWELTGELAKSGGDPFEARYFYLNDEGNERER 251
Query: 259 IFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQ 318
++D V +A+ TV DV T++ P NT +R A S LG AM
Sbjct: 252 VWDGDVAEVLTEALGAADAATVDDVDRRTQTDDPPTPFNTTAFIRAAGS-LGYSAQRAMS 310
Query: 319 IAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGIS-KPRKG- 376
+AE LYT GYV+YPRT+ T YPE+ + ++ + ++ +G +L +P +G
Sbjct: 311 LAEDLYTAGYVTYPRTDNTVYPEDLEPAELIEELSAASTFGTDAASLLDGDDEIEPTEGD 370
Query: 377 KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFS------ 429
++ DHPPI PT +L + + L D W +Y+ IVR F+ T C D +++ +
Sbjct: 371 EETTDHPPIHPTGELPSASDLSDDEWEVYELIVRRFLAT-CADPATWERLRVVALANGEA 429
Query: 430 -------------------------VADEMFTMEA--KYLLHPGFTGVMTWSAMKNESIP 462
VAD ++A K LL G+ V + + +P
Sbjct: 430 TPIAETADGLAALRNPDDATKPADLVADGGLRLKANGKRLLEAGYHDVYPYRSSDERIVP 489
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
D + G+ + + ++T PP +S LI MEK +GT A+ I + RNYV
Sbjct: 490 DVEVGETLSLSDRATEGKETQPPRRYGQSRLIEEMEKRQLGTKATRHRTIEKLYDRNYV 548
>gi|354611994|ref|ZP_09029946.1| DNA topoisomerase [Halobacterium sp. DL1]
gi|353191572|gb|EHB57078.1| DNA topoisomerase [Halobacterium sp. DL1]
Length = 828
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 157/534 (29%), Positives = 248/534 (46%), Gaps = 33/534 (6%)
Query: 33 GACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP 92
+V+EW G + + GH++G+DF +Y++W V+P EL K E T
Sbjct: 30 AGVNVYEWGG--------RRCIGLSGHVVGVDFPPEYSDWRDVEPAELVHADVVK-EPTQ 80
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT 152
+ + A L A++ + +++ D D+EGE I E E VR +N +P + RFS+IT
Sbjct: 81 EDIVNA-LQRLAREADSVIIATDYDREGELIGKEAFELVR-AVNEEAP---VKRRFSSIT 135
Query: 153 DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGP 212
D ++++A N + + A + +ARQ +DL G A TR F + + IS G
Sbjct: 136 DNEVRSAFANPDEIDFDLAAAGEARQTIDLMWGAALTR----FLSLSAKQMGSDFISVGR 191
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTWSRG------HIFDKST 264
QTPTL V++ +I F+P+ YW L DLT + + ++++
Sbjct: 192 VQTPTLKLIVDKEREIEAFEPDDYWELFADLTKDETEFEAQYFYESEDGTEAERVWNEDD 251
Query: 265 CNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY 324
F + + V V S T++ P NT + +R A S LG AM IAE LY
Sbjct: 252 AEAAFATLREASEAIVQSVSSRTRTDDPPAPFNTTQFIRAAGS-LGYSAGRAMSIAEDLY 310
Query: 325 TQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHP 383
T GYV+YPRT+ T YP++ D +L E++ +GD +L P +G ++ DHP
Sbjct: 311 TAGYVTYPRTDNTVYPDDLDERELLAAFENTV-FGDSATSLLERDDLTPTEGDEETTDHP 369
Query: 384 PITPTK-LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYL 442
PI PT R QL D W +Y+ +VR F TL V+ E K L
Sbjct: 370 PIHPTSDFPDRNQLSEDEWEVYELVVRRFFATLAPSAVWEHLRVVADADGERLKSNGKRL 429
Query: 443 LHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGI 502
+ G+ V + +P + G+ + + ++ ++T PP +S LI ME G+
Sbjct: 430 VEEGYHAVYPYFNTSENHVPAVEEGEALALADARIEAKQTQPPRRYGQSRLIETMEDLGV 489
Query: 503 GTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
GT ++ I + R Y+ R PT+L +V ++ +V M S
Sbjct: 490 GTKSTRHNTIEKLYDRGYIENDPPR---PTTLAKAVVEAAEEYADLVVSEEMTS 540
>gi|448457005|ref|ZP_21595579.1| DNA topoisomerase I [Halorubrum lipolyticum DSM 21995]
gi|445811092|gb|EMA61102.1| DNA topoisomerase I [Halorubrum lipolyticum DSM 21995]
Length = 865
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 164/544 (30%), Positives = 256/544 (47%), Gaps = 77/544 (14%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+R N +V++W G + + GH++G+DF ++YN+W V+P+EL P K
Sbjct: 31 ERQND-VNVYKWGGK--------RCIGLSGHVVGVDFPAEYNDWRDVEPVELIDAPVTK- 80
Query: 89 EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF 148
E T + + A L A++ +V+ D D+EGE I E E VR ++N ++P + R RF
Sbjct: 81 EPTQE-GIVAALRKLARNASRVVIATDYDREGELIGKEAYELVR-EVNEDAP--IDRVRF 136
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
S+ITD ++ A N + + A + +ARQ +DL G A TR+ + + GD I
Sbjct: 137 SSITDNEVNEAFANPDELDFDLAAAGEARQVIDLTWGAALTRFLS-LSARQLGD---DFI 192
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLT-------------LNLNGVAVSVT 253
S G Q PTL V+R +I+ F PE YW L +LT LN +G
Sbjct: 193 SVGRVQGPTLKLIVDREREIQAFDPEAYWELYGNLTKSGGDPFEARYFYLNDDGNEAERV 252
Query: 254 WSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGP 313
W D V +A+ V DV+ T++ P NT +R A S LG
Sbjct: 253 W------DGDVAEVLTEALAAAGEAVVDDVRRRTRTDEPPTPFNTTAFIRAAGS-LGYSA 305
Query: 314 HHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVL-SNGISK 372
AM +AE LYT GYV+YPRT+ T YPE+ D ++ + ++ +G + +L ++ +
Sbjct: 306 QRAMSLAEDLYTAGYVTYPRTDNTVYPEDLDPRELIEELSAASTFGKDAKSLLDADREIE 365
Query: 373 PRKG-KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGD-----------L 419
P +G ++ DHPPI PT +L + + L D W +Y+ IVR F+ T C + L
Sbjct: 366 PTEGDEETTDHPPIHPTGELPSASDLSEDEWEVYELIVRRFLAT-CAEPATWERLRVVAL 424
Query: 420 VYTQKVAKFSVADEMFTM----------------------EAKYLLHPGFTGVMTWSAMK 457
+ A AD + + K LL G+ V + +
Sbjct: 425 ANGEATAIAERADGLAALRNPDEASGPGDLVADGGLRLKANGKRLLEAGYHDVYPYRSSD 484
Query: 458 NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQ 517
+PD G+ + + + ++T PP +S LI MEK G+GT A+ + +
Sbjct: 485 ERIVPDVAVGETLALTDRRTDAKETQPPRRYGQSRLIEEMEKRGVGTKATRHRTLEKLYD 544
Query: 518 RNYV 521
RNY+
Sbjct: 545 RNYI 548
>gi|448444924|ref|ZP_21590071.1| DNA topoisomerase I [Halorubrum saccharovorum DSM 1137]
gi|445685679|gb|ELZ38029.1| DNA topoisomerase I [Halorubrum saccharovorum DSM 1137]
Length = 864
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 157/536 (29%), Positives = 255/536 (47%), Gaps = 75/536 (13%)
Query: 36 SVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK 95
+V++W G + + GH++G+DF ++YN+W V+P+EL P K E T +
Sbjct: 37 NVYKWGGK--------RCIGLSGHVVGVDFPAEYNDWRDVEPVELIDAPVTK-EPTQE-G 86
Query: 96 LPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKD 155
+ A L A++ +V+ D D+EGE I E E VR ++N ++P + R RFS+IT+ +
Sbjct: 87 IVAALRKLARNASRVVIATDYDREGELIGKEAYELVR-EVNEDAP--IDRVRFSSITENE 143
Query: 156 IKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQT 215
++ A N + + A + +ARQ +DL G A TR+ + + GD IS G Q
Sbjct: 144 VREAFANPDELDFDLAAAGEARQVIDLTWGAALTRFLS-LSARQLGD---DFISVGRVQG 199
Query: 216 PTLGFCVERHDKIRTFKPEPYWLL--DLT-------------LNLNGVAVSVTWSRGHIF 260
PTL V+R +I+ F PE YW L +LT LN G W
Sbjct: 200 PTLKLIVDREREIQAFDPESYWELYGNLTKSGGDPFEARYFYLNDEGNEAERVW------ 253
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D V +A++ + V DV+ T++ P NT +R A S LG AM +A
Sbjct: 254 DGDAAEVLTEALDAAEDAVVDDVRRRTRTDDPPTPFNTTAFIRAAGS-LGYSAQRAMSLA 312
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDV 379
E LYT GYV+YPRT+ T YP++ + ++ + ++ +G + +L +P +G ++
Sbjct: 313 EDLYTAGYVTYPRTDNTVYPDDLEPRELIEELSAASTFGTDAKSLLDREEIEPTEGDEET 372
Query: 380 GDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFT-- 436
DHPPI PT +L + + L D W +Y+ IVR F+ T C + +++ ++A+ T
Sbjct: 373 TDHPPIHPTGELPSASDLSEDEWEVYELIVRRFLAT-CAEPATWERLRVVALANGEATPI 431
Query: 437 -------------------------------MEAKYLLHPGFTGVMTWSAMKNESIPDFK 465
K LL G+ V + + +PD +
Sbjct: 432 AERADGLAALRDPDEATGPGDLAADGGLRLKANGKRLLEAGYHDVYPYRSSDERIVPDVE 491
Query: 466 PGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
G+ + + + ++T PP +S LI MEK G+GT A+ + + RNY+
Sbjct: 492 VGETLALTDRRTDAKETQPPRRYGQSRLIEEMEKRGVGTKATRHRTLEKLYDRNYI 547
>gi|269217134|ref|ZP_06160988.1| DNA topoisomerase [Slackia exigua ATCC 700122]
gi|269129271|gb|EEZ60356.1| DNA topoisomerase [Slackia exigua ATCC 700122]
Length = 838
Score = 218 bits (555), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 146/488 (29%), Positives = 232/488 (47%), Gaps = 18/488 (3%)
Query: 70 NNWDKVDPLELFS-CPTEKREATPKLK-LPAFLANEAKDCEFLVLWLDCDKEGENICFEV 127
N W K+D L + P EK PK K + L N AK + +++ D D+EGE I +
Sbjct: 108 NTW-KMDTLPYLTYAPIEK---LPKEKDIIRSLKNLAKKADEIIIATDFDREGELIGSDA 163
Query: 128 MEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCA 187
+ + ++N + P V RAR+SA T +I+ A +LV ++ A++ ++RQ++DL G
Sbjct: 164 LSCI-QEVNPDVP--VARARYSAFTKPEIEHAFSHLVPLDVNLAQAGESRQDIDLIWGAV 220
Query: 188 FTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNG 247
TR+ T YG++ +S G QTPTL V R + F PE YW++
Sbjct: 221 LTRFLTIVKFAGYGNVRSS----GRVQTPTLALIVARERERMAFVPEDYWVVKGLFADGA 276
Query: 248 VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASS 307
T+++ I DK+ + +E V ++ ++ P NT LM A++
Sbjct: 277 DEFEATYAQKRISDKAQADAVMAHIEGVDSARVSAIEKRRRTIAPPAPFNTTSLM-AAAA 335
Query: 308 GLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLS 367
G+ P M++AE LY G +SYPR + T YP++ DL V+R P + + +++LS
Sbjct: 336 NEGLSPARTMRLAESLYMAGIISYPRVDNTVYPDSLDLADVVRVLSKVPAYAPYCQKLLS 395
Query: 368 NG-ISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVA 426
G +S R ++ DHPPI PT A LD W+LY+ I R F+ TL +
Sbjct: 396 KGALSATRGKQETTDHPPIYPTAPADPDSLDPAQWKLYNLIARRFLATLSESAITENTKV 455
Query: 427 KFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPD 486
F V E F PGF + + K+ +P + G + + +++T PP
Sbjct: 456 TFDVNSEPFDTSGVITQKPGFRAIYPYGRKKDVQLPPLEQGQTVDFKGAACEKKQTQPPA 515
Query: 487 YLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKID 546
++ LI MEK G+GT A+ I + Q Y+ + P+ LGI + K
Sbjct: 516 RYSQGVLIQEMEKLGLGTKATRASMIERLYQVKYI---QNDPIEPSQLGIAVCDALGKFA 572
Query: 547 RELVEPTM 554
++ P M
Sbjct: 573 PQITSPDM 580
>gi|452206874|ref|YP_007486996.1| DNA topoisomerase I [Natronomonas moolapensis 8.8.11]
gi|452082974|emb|CCQ36256.1| DNA topoisomerase I [Natronomonas moolapensis 8.8.11]
Length = 849
Score = 218 bits (554), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 142/512 (27%), Positives = 240/512 (46%), Gaps = 23/512 (4%)
Query: 52 KMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLV 111
+ + GH++G+DF +Y +W V P+EL K + + L A D + +
Sbjct: 41 RCVGLSGHVVGVDFPPEYADWRDVQPVELVDADVVK--MPTQENIVRTLQGLAADADRIT 98
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
+ D D+EGE I E E R + + + R RFS+IT+ +++ A N + A
Sbjct: 99 IATDYDREGELIGKEAYELAREETD----APIDRVRFSSITENEVREAFSNPEALDFDLA 154
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+ +ARQ +DL G A TR+ + ++G+ IS G Q+P L V+R +IR F
Sbjct: 155 AAGEARQVIDLLWGAALTRFLS-LSAKQFGE---DFISVGRVQSPALKLIVDREREIRAF 210
Query: 232 KPEPYWLLDLTLNLNGVAVSVTW-------SRGHIFDKSTCNVFFKAVEKEKHVTVVDVQ 284
P+ YW L L +G A + +++++ F+ ++ + V V+
Sbjct: 211 DPDDYWELFADLLKDGDAFEAQYFYLEDGNEAERVWEEADATEAFEQLQGAREAIVESVR 270
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD 344
++ P+ NT + + ASS +G+ AM +AE LYT GY++YPRT+ T YP++ D
Sbjct: 271 RRRRTDEPPEPFNTTQYISSASS-VGLSAQKAMSVAEELYTAGYITYPRTDNTVYPDDLD 329
Query: 345 LVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPT-KLATRTQLDGDAWR 402
A+L + +GD +LS +P G ++ DHPPI PT ++ R L D W
Sbjct: 330 PEALLDEFTDHYLFGDDADSLLSADAIEPTAGDEETTDHPPIHPTGEIPARDDLSEDEWE 389
Query: 403 LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP 462
+Y+ +VRHF T+ + K LL PG+ V + + +P
Sbjct: 390 VYELVVRHFFATVADPAEWEHLKVVADANGCSLKANGKRLLEPGYHEVYPYRSTAENHVP 449
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT 522
D G+++ + ++ ++T PP +S LI +E +GT ++ I + R Y+
Sbjct: 450 DVDEGEILDVTEARIEAKQTQPPRRRGQSRLIEELESRSLGTKSTRHHTIEKLYDRGYIE 509
Query: 523 VTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
R PT L + +V +K +V+ M
Sbjct: 510 SDPPR---PTKLAMAVVEAAEKFADRIVDEGM 538
>gi|298709983|emb|CBJ31703.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 759
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/369 (33%), Positives = 192/369 (52%), Gaps = 10/369 (2%)
Query: 199 KYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL------NLNGVA-VS 251
++ +L +ISYGPCQ PTLGF V+R+ +I+ F+ E +W + + + G A
Sbjct: 4 RFDELQEGVISYGPCQFPTLGFIVDRYKRIQAFQSEAFWSIKMEYAEDDPRSPGGKARAD 63
Query: 252 VTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGM 311
+W RG ++D + C + ++ ++ V V++ +K +P ++TVEL + AS +
Sbjct: 64 FSWQRGRLYDHACCAILYEMTVEDGVAVVTSVEARRVTKARPIPMSTVELQKRASRFCHI 123
Query: 312 GPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSN-GI 370
M +AE LY +G +SYPRTET ++ FD+ +L +P +G++V +L N G
Sbjct: 124 SSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLGDFRDNPRFGNYVGGLLDNGGF 183
Query: 371 SKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFS 429
PR+G+ D HPPI PTK L D ++Y+ + +HF+ D V Q +
Sbjct: 184 LWPREGRGDDSAHPPIHPTKSVDPNSLQADEKKIYELVTKHFLACCSKDAVGHQTKVLAN 243
Query: 430 VADEMFTMEAKYLLHPGFTGVMT-WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYL 488
E FT + + V + +IP+F G + M E +T P L
Sbjct: 244 CGGEDFTATGLMVTERNWLDVYEPFERWTGRNIPEFFQGQEFVPSVLVMDEGRTQAPPLL 303
Query: 489 TESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRE 548
+ES+LI LM++ GIGTDA+I HI I QR Y R PT+LG+ LV GY I +
Sbjct: 304 SESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIGFQ 363
Query: 549 LVEPTMRSA 557
+ PT+R+A
Sbjct: 364 MSAPTLRAA 372
>gi|448344818|ref|ZP_21533720.1| DNA topoisomerase I [Natrinema altunense JCM 12890]
gi|445636924|gb|ELY90081.1| DNA topoisomerase I [Natrinema altunense JCM 12890]
Length = 1378
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 150/485 (30%), Positives = 242/485 (49%), Gaps = 29/485 (5%)
Query: 30 RMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKRE 89
R NG +V+EW G + + GH++G+DF S+Y++W V+P+EL EK
Sbjct: 28 RENG-VNVYEWGGK--------RCVGLSGHVVGVDFPSEYSDWRDVEPVELIDADVEK-- 76
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFS 149
K + A L A+ + + + D D+EGE I E + VR N++ + R RFS
Sbjct: 77 TATKENIVATLRLLARRAQRVTIATDYDREGELIGKEAYDIVR---NVDEDVPIRRVRFS 133
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
+IT+ +++ A + + A + +ARQ +DL G A TRY + G+ GD IS
Sbjct: 134 SITENEVQNAFDEPDELDFDLAAAGEARQIIDLIWGAALTRYLS-LSAGQLGD---DFIS 189
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFF 269
G Q+PTL V+R +I+ F+PE YW L L + + + D V+
Sbjct: 190 VGRVQSPTLKLIVDREREIQAFEPEEYWELFADLRKDETSFEAQYFYRDEDDNEAERVWE 249
Query: 270 KAVEKEKHVTVVDVQSS--------TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
++V E + T+ D + T++ T P+ NT + +R A+S +G AM IAE
Sbjct: 250 ESVADEVYETLADDDVATVVDVTRRTRTDTPPEPFNTTQFIR-AASAIGYSAKRAMSIAE 308
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVG 380
LYT GY++YPRT+ T YP++ D +L + + P G+ +L P +G ++
Sbjct: 309 DLYTAGYITYPRTDNTVYPDDLDPEDLLDEFVNHPSLGESAESLLEADEITPTEGDEETT 368
Query: 381 DHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA 439
DHPPI PT ++ +R + D W +Y+ +VR F T+ V+ D
Sbjct: 369 DHPPIHPTGEIPSRGDISDDEWEVYELVVRRFYATVADAAVWEHLKVVAEADDHRLKANG 428
Query: 440 KYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
K L+ PG+ V + + +PD G+ + + V++ +++T PP +S LI ME+
Sbjct: 429 KRLVEPGYHDVYPYFSTTENYVPDVDEGEELALSDVELEDKQTQPPRRYGQSRLIETMEE 488
Query: 500 HGIGT 504
GIGT
Sbjct: 489 MGIGT 493
>gi|16554466|ref|NP_444190.1| DNA topoisomerase I [Halobacterium sp. NRC-1]
gi|169235326|ref|YP_001688526.1| DNA topoisomerase I [Halobacterium salinarum R1]
gi|167726392|emb|CAP13175.1| DNA topoisomerase I [Halobacterium salinarum R1]
Length = 829
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 157/534 (29%), Positives = 242/534 (45%), Gaps = 37/534 (6%)
Query: 36 SVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK 95
+V+EW G + + GH++G+DF +YN+W V+P EL K + T +
Sbjct: 33 NVYEWGG--------RRCIGLSGHVVGVDFPPEYNDWRDVEPAELIHADVVK-DPTQEDI 83
Query: 96 LPAF--LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITD 153
+ A LA EA D +V+ D D+EGE I E E VR ++N +P V R RFS+ITD
Sbjct: 84 VNALQRLAREADD---VVIATDYDREGELIGKEAYELVR-EVNEQAP--VNRVRFSSITD 137
Query: 154 KDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPC 213
++++A + + A + +ARQ +DL G + TR F G + IS G
Sbjct: 138 TEVRSAFADPDDIDFDLAAAGEARQIVDLMWGASLTR----FLSLSAGQMGEDFISVGRV 193
Query: 214 QTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW---------SRGHIFDKST 264
Q+PTL V++ +I F P+ YW L L + + ++++
Sbjct: 194 QSPTLKLIVDKEREIEAFDPDDYWELFADLRKDQTTFEAQYFYEDPADGTEAERVWNEGD 253
Query: 265 CNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY 324
+ F A+ + V V T++ P NT + +R A S LG AM IAE LY
Sbjct: 254 ADAAFDALRQAGEAVVDSVSRRTRTDDPPAPFNTTQFIRAAGS-LGYSAGRAMSIAEDLY 312
Query: 325 TQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHP 383
T GY++YPRT+ T YP++ D +L + + +GD +L P G ++ DHP
Sbjct: 313 TAGYITYPRTDNTVYPDDLDERDLLEAFQQTV-FGDDADSLLDQDRLSPTSGDEETTDHP 371
Query: 384 PITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYL 442
PI PT R QL D W +Y+ +VR F T+ + E K L
Sbjct: 372 PIHPTTDFPDRNQLSEDEWAVYELVVRRFFATVAAPAEWAHLRVTADADGESLKANGKRL 431
Query: 443 LHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGI 502
+ G+ V + +P + GD + I ++ ++T PP +S LI ME I
Sbjct: 432 VEAGYHAVYPYYDSSENHVPPVEEGDTLAITDARLDAKQTQPPRRYGQSRLIETMESMDI 491
Query: 503 GTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
GT ++ I + R Y+ R PT+L +V + +V M S
Sbjct: 492 GTKSTRHNTIEKLYDRGYIENDPPR---PTTLAEAVVEAAEDYADVVVSEEMTS 542
>gi|11499394|ref|NP_070633.1| DNA topoisomerase I [Archaeoglobus fulgidus DSM 4304]
gi|14423959|sp|O28469.1|TOP1_ARCFU RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|2648740|gb|AAB89443.1| DNA topoisomerase I (topA) [Archaeoglobus fulgidus DSM 4304]
Length = 663
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 147/465 (31%), Positives = 224/465 (48%), Gaps = 21/465 (4%)
Query: 58 GHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCD 117
GHI+ LDF + NNW K PLE E + + + + L AK + + + D D
Sbjct: 51 GHIVELDFPKELNNWTKT-PLEKL-LQAELVKKVKERTISSILKEIAKKADRVTVATDYD 108
Query: 118 KEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDAR 177
+EGE I E +E V+ ++N V R R+SA+T+K+I++A VK + A + AR
Sbjct: 109 REGELIGVEALEIVK---SVNPTVKVDRVRYSAVTEKEIRSAFSKPVKVDFNLANAALAR 165
Query: 178 QELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYW 237
Q++DL G TR G + +S G QTPTL V+R +I+ FKPE Y+
Sbjct: 166 QKIDLIWGATLTR----LISVHSGRMGKDFLSVGRVQTPTLRLIVDRELEIQNFKPEKYY 221
Query: 238 LLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALN 297
++ G G + +F K E K V + + +P N
Sbjct: 222 --EIFAEFEGFIAKHPKRYGS--KEEAEKLFAKIGETAK---VEEFTRRRMEENRPTPFN 274
Query: 298 TVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPD 357
T E +R AS M PH AM IAE LY GY+SYPRT+ T YP +L+ ++ S
Sbjct: 275 TTEFLREASKF--MSPHKAMNIAETLYMNGYISYPRTDNTVYPPTINLIEIVSALSSV-- 330
Query: 358 WGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLC 416
+ + VLS P +G+ + DHPPI PT +A R +L D W +Y+ +VR F+ TL
Sbjct: 331 FPREAQIVLSQDKITPSRGRRETKDHPPIYPTGVAKRGELSKDEWTIYELVVRRFLATLA 390
Query: 417 GDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVK 476
V+ + F + L+ G+ + +S + +P K GD++ I +
Sbjct: 391 PKAVWDVRRVVLDSNGVKFVANGRQLVEAGWRDIYIYSKAEETELPLLKKGDVLRILKKR 450
Query: 477 MVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
+ E++T PP + S LI +MEK +GT ++ I + R Y+
Sbjct: 451 LEEKETKPPGRYSASSLIKMMEKLNLGTKSTRHEIIQKLVSRRYI 495
>gi|109490882|ref|XP_001077625.1| PREDICTED: DNA topoisomerase 3-alpha [Rattus norvegicus]
Length = 735
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 128/329 (38%), Positives = 186/329 (56%), Gaps = 9/329 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSNGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETQHCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT ++AA +L +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCK---AVKPNLQVLRARFSEITHHAVRAACEHLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHR 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IKVTHDHKDGTVEFNWKRYRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQG 327
VEL ++AS L + M+IAE+LYTQG
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQG 358
>gi|448467207|ref|ZP_21599409.1| DNA topoisomerase I [Halorubrum kocurii JCM 14978]
gi|445812864|gb|EMA62851.1| DNA topoisomerase I [Halorubrum kocurii JCM 14978]
Length = 865
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 160/536 (29%), Positives = 250/536 (46%), Gaps = 74/536 (13%)
Query: 36 SVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK 95
+V++W G + + GH++G+DF ++YN+W V+P+EL P K E T +
Sbjct: 37 NVYKWGGK--------RCIGLSGHVVGVDFPAEYNDWRDVEPVELIDAPVTK-EPTQE-G 86
Query: 96 LPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKD 155
+ A L A++ +V+ D D+EGE I E E VR ++N ++P + R RFS+ITD +
Sbjct: 87 IVAALRKLARNASRVVIATDYDREGELIGKEAYELVR-EVNEDAP--IDRVRFSSITDNE 143
Query: 156 IKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQT 215
++ A N + + A + +ARQ +DL G A TR+ + + GD IS G Q
Sbjct: 144 VQKAFANPDELDFDLAAAGEARQVIDLTWGAALTRFLS-LSARQLGD---DFISVGRVQG 199
Query: 216 PTLGFCVERHDKIRTFKPEPYWLL--DLT-------------LNLNGVAVSVTWSRGHIF 260
PTL V+R +I+ F PE YW L +LT LN G W
Sbjct: 200 PTLKLIVDREREIQAFDPESYWELYGNLTKSGGDPFEARYFYLNDEGNEAERVW------ 253
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D V +A++ V DV+ T++ P NT +R A S LG AM +A
Sbjct: 254 DGDVAEVLTEALDAADEAVVDDVRRRTRTDEPPTPFNTTAFIRAAGS-LGYSAQRAMSLA 312
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVL-SNGISKPRKG-KD 378
E LYT GYV+YPRT+ T YPE+ D ++ + + +G + +L ++ +P +G ++
Sbjct: 313 EDLYTAGYVTYPRTDNTVYPEDLDPRELIEELSVASTFGADAKRLLDADREIEPTEGDEE 372
Query: 379 VGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFI-------------------GTLCGD 418
DHPP+ PT +L + L D W +Y+ IVR F+ G G
Sbjct: 373 TTDHPPVHPTGELPAASDLSEDEWEVYELIVRRFLATCAEPATWERLRVVALANGAATGI 432
Query: 419 LVYTQKVAKFSVADEM-------------FTMEAKYLLHPGFTGVMTWSAMKNESIPDFK 465
+A +DE K LL G+ V + + +PD +
Sbjct: 433 AERADGLAALRNSDEASGPGDLVADGGLRLKANGKRLLEAGYHDVYPYRSSDERIVPDVE 492
Query: 466 PGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
G+ + + + ++T PP +S LI MEK G+GT A+ + + RNY+
Sbjct: 493 VGETLALTDRRTDAKETQPPRRYGQSRLIEEMEKRGVGTKATRHRTLEKLYDRNYI 548
>gi|207342920|gb|EDZ70541.1| YLR234Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 478
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 139/416 (33%), Positives = 204/416 (49%), Gaps = 41/416 (9%)
Query: 174 VDARQELDLRIGCAFTRYQTKFFQGKYGDL----------------DASLISYGPCQTPT 217
V R E+DLR G FTR T+ + K + D+ ++SYG CQ PT
Sbjct: 1 VGTRIEIDLRAGVTFTRLLTETLRNKLRNQATMTKDGAKHRGGNKNDSQVVSYGTCQFPT 60
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNL--NGVAVSVTWSRGHIFDKSTCNVFFKA-VEK 274
LGF V+R ++IR F PE +W + L + NG + W RGH+FD+ + F++ +E
Sbjct: 61 LGFVVDRFERIRNFVPEEFWYIQLVVENKDNGGTTTFQWDRGHLFDRLSVLTFYETCIET 120
Query: 275 EKHVT-VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333
+V VVD++S +K +P L TVEL + + L + ++ AE+LY +G++SYPR
Sbjct: 121 AGNVAQVVDLKSKPTTKYRPLPLTTVELQKNCARYLRLNAKQSLDAAEKLYQKGFISYPR 180
Query: 334 TETTQYPENFDLVAVLRQQE--------SSPDWGDHVREVL-------SNGISKPRKGK- 377
TET +P DL +++ +Q W + +L +N PR G
Sbjct: 181 TETDTFPHAMDLKSLVEKQAQLDQLAAGGRTAWASYAASLLQPENTSNNNKFKFPRSGSH 240
Query: 378 DVGDHPPITP-TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFT 436
D HPPI P L + R+Y+Y+ RHF+ D A E F+
Sbjct: 241 DDKAHPPIHPIVSLGPEANVSPVERRVYEYVARHFLACCSEDAKGQSTTLVLDWAVERFS 300
Query: 437 MEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELIS 495
+L F V W+ + + +P + L+ I +M T PP +TESELI
Sbjct: 301 ASGLVVLERNFLDVYPWARWETTKQLPRLEMNALVDIAKAEMKAGTTAPPKPMTESELIL 360
Query: 496 LMEKHGIGTDASIPVHINNICQRNYV---TVTSGRRLVPTSLGIVLVHGYQKIDRE 548
LM+ +GIGTDA+I HI+ I RNYV V L PT+LG+ LVHG++ I E
Sbjct: 361 LMDTNGIGTDATIAEHIDKIQVRNYVRSEKVGKETYLQPTTLGVSLVHGFEAIGLE 416
>gi|448531338|ref|ZP_21621025.1| DNA topoisomerase I [Halorubrum hochstenium ATCC 700873]
gi|445707295|gb|ELZ59153.1| DNA topoisomerase I [Halorubrum hochstenium ATCC 700873]
Length = 865
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 163/532 (30%), Positives = 251/532 (47%), Gaps = 66/532 (12%)
Query: 36 SVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK 95
+V+EW G + + GH++G+DF ++YN+W V+P+EL P K TP +
Sbjct: 37 NVYEWGGK--------RCIGLSGHVVGVDFPAEYNDWRDVEPVELIDAPVTK---TPTQE 85
Query: 96 -LPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDK 154
+ A L A++ +V+ D D+EGE I E E VR ++N ++P V R RFS+IT+
Sbjct: 86 GIVAALRRLARNASRVVIATDYDREGELIGKEAYELVR-EVNEDAP--VDRVRFSSITEN 142
Query: 155 DIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQ 214
+++ A N + + A + +ARQ +DL G A TR+ + + GD IS G Q
Sbjct: 143 EVQEAFANPDELDFELAAAGEARQTIDLTWGAALTRFLS-LSARQLGD---DFISVGRVQ 198
Query: 215 TPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNG---------VAVSVTWSRGHIFDKSTC 265
PTL V+R +I+ F PEPYW L L +G R ++D+
Sbjct: 199 GPTLKLIVDREREIQAFDPEPYWELTGELAKSGGDPFEARYFYLNDEGNERERVWDEGVA 258
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
+A++ V DV T++ P NT +R A S LG AM +AE LYT
Sbjct: 259 ETLTEALDAADGANVDDVTRRTQTDDPPTPFNTTAFIRAAGS-LGYSAQRAMSLAEDLYT 317
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGIS-KPRKG-KDVGDHP 383
GYV+YPRT+ T YP++ + ++ S +G ++ + +P +G ++ DHP
Sbjct: 318 AGYVTYPRTDNTVYPDDLEPEELIADLAESSTFGTDATSLIDDDREIEPTEGDEETTDHP 377
Query: 384 PITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGD------------------------ 418
PI PT +L + + L D W +Y+ IVR F+ T C D
Sbjct: 378 PIHPTGELPSASDLSDDEWEVYELIVRRFLAT-CADPATWERLRVVALANGEATPIAERA 436
Query: 419 -----LVYTQKVAKFS--VADEMFTMEA--KYLLHPGFTGVMTWSAMKNESIPDFKPGDL 469
L AK + VAD ++A K LL G+ V + + +PD + G+
Sbjct: 437 DGLAALRNPDDAAKPADLVADGGLRLKANGKRLLEAGYHEVYPYRSSDERIVPDVEVGET 496
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
+ + ++T PP +S LI MEK +GT A+ I + RNYV
Sbjct: 497 LSLSDRATEGKETQPPRRYGQSRLIEEMEKRQLGTKATRHRTIEKLYDRNYV 548
>gi|282165000|ref|YP_003357385.1| DNA topoisomerase I [Methanocella paludicola SANAE]
gi|282157314|dbj|BAI62402.1| DNA topoisomerase I [Methanocella paludicola SANAE]
Length = 679
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 149/497 (29%), Positives = 230/497 (46%), Gaps = 17/497 (3%)
Query: 59 HIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDK 118
HI+ LDF +Y+ W P L P K + LA+ A + + D D+
Sbjct: 49 HIVALDFPGEYSRWSAHPPSTLIGAPIV--SVPTKKDIIGALASLAPSATKVTIATDYDR 106
Query: 119 EGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQ 178
EGE I E + H++ +P R +S+ ++I+ A V + A + + RQ
Sbjct: 107 EGELIGVEAYNII-HRLT-KAP--FERVHYSSFAKQEIEQAFARPVPLDFNLAAAGECRQ 162
Query: 179 ELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
E+DL G A TR+ + G D +S G QTP L V+R +I F +PYW
Sbjct: 163 EIDLVWGAALTRFVS--LAGNKAGKD--FLSVGRVQTPLLAIIVDREKEILAFVSKPYWE 218
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
L TL A + ++G K K + K V V K + P +T
Sbjct: 219 LVATLLKGQEAFTAGHAKGRFDKKEEAAAIHKKLGKT--ALVKGVLRDRKKEPAPVPFST 276
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
E ++ A+S +G AMQ+AE LY G++SYPRT+ T YP DL + ++SP++
Sbjct: 277 TEFLKAAAS-IGYSAASAMQVAEELYINGWISYPRTDNTVYPATLDLRQTVGMFKASPEF 335
Query: 359 GDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
E+L +GK + DHPPI P A++TQ+D W+LY+ +VR F TL
Sbjct: 336 AKSALELLGQKTLTATRGKVESKDHPPIYPVACASKTQMDERKWKLYELVVRRFFATLSP 395
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
+ A ++ E F + K + PG+ + K+E IP GD++ ++ V +
Sbjct: 396 PCEWEMVKASIDISGEPFISDGKRMSAPGWRKHYPYGMPKDEVIPPLAVGDVLAVKKVDL 455
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
+E+KT PP + +LI MEK G+GT A+ ++ + R Y+ G PT GI
Sbjct: 456 LEKKTEPPRRYGQGKLIETMEKLGLGTKATRHEALSKLYNRGYI---EGNPPKPTQTGIT 512
Query: 538 LVHGYQKIDRELVEPTM 554
L+ + + P M
Sbjct: 513 LIDALKAHAGAITSPGM 529
>gi|448637090|ref|ZP_21675466.1| DNA topoisomerase I [Haloarcula sinaiiensis ATCC 33800]
gi|445764637|gb|EMA15781.1| DNA topoisomerase I [Haloarcula sinaiiensis ATCC 33800]
Length = 1364
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 144/485 (29%), Positives = 233/485 (48%), Gaps = 29/485 (5%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
R NG +V+ W GD ++ + GH++G+DF +YN+W V+P+EL K
Sbjct: 27 NRRNG-VNVYRW-----GDT---RVVGLSGHVVGVDFPEEYNDWRDVEPVELIDADVTK- 76
Query: 89 EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF 148
E T + + L A++ + + D D+EGE I E E +R + + V R RF
Sbjct: 77 EPTQE-NIVTTLKQLAREADEATIATDYDREGELIGKEAYELIREETD----APVDRVRF 131
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
S+IT+++++ A N + A + +ARQ +DL G A TR+ + + GD I
Sbjct: 132 SSITEREVRDAFANPDDIDFDLAAAGEARQIIDLVWGAALTRFLS-LSARQLGD---DFI 187
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-------SRGHIFD 261
S G Q+PTL V+R +I+ F PE YW + L NG + ++
Sbjct: 188 SVGRVQSPTLKLIVDREREIQAFDPEDYWEIFADLQKNGSGFEAQYFYDDDGKEAERVWV 247
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
+ + + + TV V+ T++ + P NT + ASS LG AM IAE
Sbjct: 248 EDDADDAYADLTNVDAATVTSVRRRTRTDSPPTPFNTTAFISAASS-LGYSAQQAMSIAE 306
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLS-NGISKPRKGKDVG 380
LYT GY++YPRT+ T YP++ + A+L + + +G+ +L + I+ ++
Sbjct: 307 ELYTTGYITYPRTDNTVYPDDLEEDALLDEFVGAGHFGEDAEALLEQDDITATEGDEETT 366
Query: 381 DHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA 439
DHPPI PT ++ + L D W +Y+ +VR F T+ +
Sbjct: 367 DHPPIHPTGEIPPKADLSDDEWEIYELVVRRFFATVAEAATWEHLRVVADAGGRSLKANG 426
Query: 440 KYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
K L+ PG+ V +S+ +PD + G+ + I V+M ++T PP +S LI ME
Sbjct: 427 KRLVEPGYHEVYPYSSASENHVPDVEEGEELAISEVRMEAKQTQPPRRYGQSRLIQTMED 486
Query: 500 HGIGT 504
G+GT
Sbjct: 487 KGLGT 491
>gi|346310924|ref|ZP_08852936.1| hypothetical protein HMPREF9452_00805 [Collinsella tanakaei YIT
12063]
gi|345897172|gb|EGX67103.1| hypothetical protein HMPREF9452_00805 [Collinsella tanakaei YIT
12063]
Length = 862
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 146/472 (30%), Positives = 223/472 (47%), Gaps = 20/472 (4%)
Query: 91 TPKLKLPA------FLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVW 144
P +K PA L N AK + +V+ D D+EGE I + + VR ++ + P V
Sbjct: 121 APIIKNPAEKEIIRVLKNLAKKADSVVIATDFDREGELIGSDALSCVR-EVAPDVP--VS 177
Query: 145 RARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLD 204
RAR+SA+ ++ A NLV+ + A + ++RQ +DL G TRY T G +G++
Sbjct: 178 RARYSALIKGEVTEAFNNLVELDQNLADAGESRQYIDLIWGAVLTRYLTLAKFGGFGNVR 237
Query: 205 ASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKST 264
S G QTPTL VER + F PE YW + G + + DK
Sbjct: 238 ----SAGRVQTPTLALVVERERERMAFVPEDYWQIRGMAAAKGADFKINHATARFTDKDA 293
Query: 265 CNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY 324
F V+ TV DV ++ + P NT L + A++ G+ P M+IAE LY
Sbjct: 294 AQTAFGHVDGVVAGTVTDVAKRSRKQQPPVPFNTTSL-QAAAAAEGISPARTMRIAESLY 352
Query: 325 TQGYVSYPRTETTQYPENFDLVAVLRQ-QESSPDWGDHVREVLSNGISKPRKGK-DVGDH 382
G +SYPR + T YP + DL +++ +SP ++VL+ G KP +GK + DH
Sbjct: 353 MSGLISYPRVDNTVYPRSLDLEGIVKGLAANSPALAPVCKKVLA-GPMKPTRGKTETTDH 411
Query: 383 PPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYL 442
PPI PT T LD +LY+ I R F+ TL G VA E FT L
Sbjct: 412 PPIHPTGQGDPTTLDSGQLKLYNLIARRFLATLMGPATIENTKVSIDVAGEPFTASGDVL 471
Query: 443 LHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGI 502
+ GF + ++E +P GD++ + V + ++T PP ++ +L+ MEK G+
Sbjct: 472 VDAGFREAYPYGLKRDEQLPALDAGDVVDVHDVNLEAKQTEPPARYSQGKLVQEMEKRGL 531
Query: 503 GTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
GT ++ I + Q Y+ + P+ LG+ +V + + P M
Sbjct: 532 GTKSTRASIIERLYQVRYL---KNDPIEPSQLGMAIVDALSQFAPRITTPEM 580
>gi|55378414|ref|YP_136265.1| DNA topoisomerase I [Haloarcula marismortui ATCC 43049]
gi|55231139|gb|AAV46558.1| DNA topoisomerase I [Haloarcula marismortui ATCC 43049]
Length = 1364
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 137/462 (29%), Positives = 224/462 (48%), Gaps = 20/462 (4%)
Query: 52 KMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLV 111
++ + GH++G+DF +YN+W V+P+EL K E T + + L A++ +
Sbjct: 41 RVVGLSGHVVGVDFPEEYNDWRDVEPVELIDADVTK-EPTQE-NIVTTLKQLAREADEAT 98
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
+ D D+EGE I E E +R + + V R RFS+IT+++++ A N + A
Sbjct: 99 IATDYDREGELIGKEAYELIREETD----APVDRVRFSSITEREVRDAFANPDDIDFDLA 154
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+ +ARQ +DL G A TR+ + + GD IS G Q+PTL V+R +I+ F
Sbjct: 155 AAGEARQIIDLVWGAALTRFLS-LSARQLGD---DFISVGRVQSPTLKLIVDREREIQAF 210
Query: 232 KPEPYWLLDLTLNLNGVAVSVTW-------SRGHIFDKSTCNVFFKAVEKEKHVTVVDVQ 284
PE YW + L NG + ++ + + + + TV V+
Sbjct: 211 DPEDYWEIFADLQKNGSGFEAQYFYDDDGKEAERVWVEDDADDAYADLTNVDAATVTSVR 270
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD 344
T++ + P NT + ASS LG AM IAE LYT GY++YPRT+ T YP++ +
Sbjct: 271 RRTRTDSPPTPFNTTAFISAASS-LGYSAQQAMSIAEELYTTGYITYPRTDNTVYPDDLE 329
Query: 345 LVAVLRQQESSPDWGDHVREVLS-NGISKPRKGKDVGDHPPITPT-KLATRTQLDGDAWR 402
A+L + + +G+ +L + I+ ++ DHPPI PT ++ + L D W
Sbjct: 330 EDALLDEFVGAGHFGEDAEALLEQDDITATEGDEETTDHPPIHPTGEIPPKADLSDDEWE 389
Query: 403 LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP 462
+Y+ +VR F T+ + K L+ PG+ V +S+ +P
Sbjct: 390 IYELVVRRFFATVAEAATWEHLRVVADAGGRSLKANGKRLVEPGYHEVYPYSSASENHVP 449
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGT 504
D + G+ + I V+M ++T PP +S LI ME G+GT
Sbjct: 450 DVEEGEELAISEVRMEAKQTQPPRRYGQSRLIQTMEDKGLGT 491
>gi|76801263|ref|YP_326271.1| DNA topoisomerase I [Natronomonas pharaonis DSM 2160]
gi|76557128|emb|CAI48702.1| DNA topoisomerase I [Natronomonas pharaonis DSM 2160]
Length = 832
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 151/537 (28%), Positives = 253/537 (47%), Gaps = 36/537 (6%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+R NG +V+ W GD + + GH++G+DF +Y +W V P+EL K+
Sbjct: 27 ERRNG-VNVYRW-----GDK---RCVGLSGHVVGVDFPPEYEDWRDVQPVELVEADVVKK 77
Query: 89 EATPKL-KLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRAR 147
+ + LA EA + + D D+EGE I E E +R + +I + R R
Sbjct: 78 PTQENIVRTLKQLAGEA---DRATIATDYDREGELIGKEAYELIREEADI----PIQRVR 130
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+IT+ ++K A + A + +ARQ +DL G A TR+ + + GD
Sbjct: 131 FSSITENEVKEAFATPDDLDFDLAAAGEARQIVDLLWGAALTRFLS-LSANQLGD---DF 186
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-------SRGHIF 260
IS G Q+PTL V+R +I F P+ YW L L G + + ++
Sbjct: 187 ISVGRVQSPTLKLIVDREREIEAFDPDDYWELFADLAREGTTFEAQYFYREDGTEQERVW 246
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D+S F+ + V V+ ++ P+ NT + + A++G+G+ AM +A
Sbjct: 247 DESGAETAFETLRNAGTAVVESVRRRRRTDEPPEPFNTTQYIS-AANGIGLSAQRAMSVA 305
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDV 379
E LYT GY++YPRT+ T YP++ D A+L + D + S +P G ++
Sbjct: 306 EELYTAGYITYPRTDNTVYPDDLDPEALLSAFTDHYLFADDAEMLRSADDIEPTAGDEET 365
Query: 380 GDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM-FTM 437
DHPPI PT ++ + L D W +Y+ +VRHF T+ D + + + AD
Sbjct: 366 TDHPPIHPTGEIPNKDDLSDDEWEVYELVVRHFFATV-ADAAEWEHLKVVADADGCSLKA 424
Query: 438 EAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLM 497
K L+ PG+ V + + +P + G+ + I+ ++ E++T PP +S LI +
Sbjct: 425 NGKRLVEPGYHEVYPYRSTSENHVPAVEEGEQLAIEDARIEEKQTQPPRRRGQSRLIEEL 484
Query: 498 EKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
E G+GT ++ + + R Y+ R PT L + +V ++ +V+ M
Sbjct: 485 ESRGLGTKSTRHNTLQKLYDRGYIESDPPR---PTKLAMAVVEAAEQFADRIVDEEM 538
>gi|257075816|ref|ZP_05570177.1| DNA topoisomerase I [Ferroplasma acidarmanus fer1]
Length = 748
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 150/507 (29%), Positives = 247/507 (48%), Gaps = 30/507 (5%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSC----PTEKREATPKLKLPAFLANEAKDCE 108
M S+ GHI+G DF ++ +W K D +L + A LK + + N
Sbjct: 38 MVSLSGHILGADFPEEFKDWVKSDLDKLIDSNIIYKVTNQRAYSALKSFSGIDN------ 91
Query: 109 FLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNI 168
+++ D D+EGE I E ++ + + RA+FSA+T +++K A NL+ N
Sbjct: 92 -IIIATDYDREGELIGVEALKFIEPGYT-----NIRRAKFSALTSQEVKDAFDNLLDVNY 145
Query: 169 FEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKI 228
A S AR+E+DL G TR FF L IS G QTPTL VER ++I
Sbjct: 146 GLADSAKAREEIDLLWGAVLTR----FFSVTSNRLWKDFISVGRVQTPTLALIVEREEEI 201
Query: 229 RTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTK 288
++F PE Y+++++T N G+ + + +I D+ N F A+ + V ++ K
Sbjct: 202 KSFVPEKYFVINVTFN-KGIDFQGVYEK-NIKDEDEANKIFNAINGNDGI-VKSYKNEKK 258
Query: 289 SKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAV 348
KP +T + +R AS +G+ P +AM+IAE+LY G +SYPRT+ T Y + L ++
Sbjct: 259 EVYKPPPFSTTDFLREASR-IGVTPSNAMKIAEKLYMSGLISYPRTDNTVYQRSIPLKSI 317
Query: 349 LRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYI 407
++ E + ++ + VL P +GK + DHPPI P + L G +Y+ I
Sbjct: 318 AQKFEGT-EFDTEAKMVLGQEKIYPSRGKVETTDHPPIYPVSYPKKA-LTGAYKNIYELI 375
Query: 408 VRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPG 467
VR F+ TL + V + A + F + + ++ G+ + + ++ +P+ G
Sbjct: 376 VRRFLATLYKNAVIEKSDADIDIKGYNFKVSGEKIIDNGWFDIYKYRKLRESKLPELVIG 435
Query: 468 DLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGR 527
+ + + M E+ T PP + L+ LME +GT ++ I + RN+ T G
Sbjct: 436 ETVKGKKWDMEEKYTEPPKRYDVASLLKLMESLNLGTKSTRHDIIQKLNDRNFAT---GN 492
Query: 528 RLVPTSLGIVLVHGYQKIDRELVEPTM 554
L PT LGI + ID ++ +P M
Sbjct: 493 PLRPTPLGIGFIKSITTIDSDIAKPDM 519
>gi|448648053|ref|ZP_21679531.1| DNA topoisomerase I [Haloarcula californiae ATCC 33799]
gi|445775923|gb|EMA26918.1| DNA topoisomerase I [Haloarcula californiae ATCC 33799]
Length = 1364
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 137/462 (29%), Positives = 223/462 (48%), Gaps = 20/462 (4%)
Query: 52 KMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLV 111
++ + GH++G+DF +YN+W V+P+EL K E T + + L A++ +
Sbjct: 41 RVVGLSGHVVGVDFPEEYNDWRDVEPVELIDADVTK-EPTQE-NIVTTLKQLAREADEAT 98
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
+ D D+EGE I E E +R + + V R RFS+IT+++++ A N + A
Sbjct: 99 IATDYDREGELIGKEAYELIREETD----APVDRVRFSSITEREVRDAFANPDDIDFDLA 154
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+ +ARQ +DL G A TR+ + + GD IS G Q+PTL V+R I+ F
Sbjct: 155 AAGEARQIIDLVWGAALTRFLS-LSARQLGD---DFISVGRVQSPTLKLIVDRERDIQAF 210
Query: 232 KPEPYWLLDLTLNLNGVAVSVTW-------SRGHIFDKSTCNVFFKAVEKEKHVTVVDVQ 284
PE YW + L NG + ++ + + + + TV V+
Sbjct: 211 DPEDYWEIFADLQKNGSGFEAQYFYDDDGKEAERVWVEDDADDAYADLTNVDAATVTSVR 270
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD 344
T++ + P NT + ASS LG AM IAE LYT GY++YPRT+ T YP++ +
Sbjct: 271 RRTRTDSPPTPFNTTAFISAASS-LGYSAQQAMSIAEELYTTGYITYPRTDNTVYPDDLE 329
Query: 345 LVAVLRQQESSPDWGDHVREVLS-NGISKPRKGKDVGDHPPITPT-KLATRTQLDGDAWR 402
A+L + + +G+ +L + I+ ++ DHPPI PT ++ + L D W
Sbjct: 330 EDALLDEFVGAGHFGEDAEALLEQDDITATEGDEETTDHPPIHPTGEIPPKADLSDDEWE 389
Query: 403 LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIP 462
+Y+ +VR F T+ + K L+ PG+ V +S+ +P
Sbjct: 390 IYELVVRRFFATVAEAATWEHLRVVADAGGRSLKANGKRLVEPGYHEVYPYSSASENHVP 449
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGT 504
D + G+ + I V+M ++T PP +S LI ME G+GT
Sbjct: 450 DVEEGEELAISEVRMEAKQTQPPRRYGQSRLIQTMEDKGLGT 491
>gi|448434802|ref|ZP_21586500.1| DNA topoisomerase I [Halorubrum tebenquichense DSM 14210]
gi|445684425|gb|ELZ36801.1| DNA topoisomerase I [Halorubrum tebenquichense DSM 14210]
Length = 879
Score = 215 bits (547), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 160/533 (30%), Positives = 251/533 (47%), Gaps = 67/533 (12%)
Query: 36 SVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLK 95
+V+EW G + + GH++G+DF ++YN+W V+P+EL P K TP K
Sbjct: 37 NVYEWGGK--------RCIGLAGHVVGVDFPAEYNDWRDVEPVELIDAPVTK---TPTQK 85
Query: 96 -LPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDK 154
+ A L A++ +V+ D D+EGE I E E VR ++N ++P V R RFS+IT+
Sbjct: 86 GIVAALRRLARNASRVVIATDYDREGELIGKEAYELVR-EVNEDAP--VDRVRFSSITEN 142
Query: 155 DIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQ 214
+++ A N + + A + +ARQ +DL G A TR+ + + GD IS G Q
Sbjct: 143 EVQEAFANPDELDFELAAAGEARQTIDLTWGAALTRFLS-LSARQLGD---DFISVGRVQ 198
Query: 215 TPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNG---------VAVSVTWSRGHIFDKSTC 265
PTL V+R +I+ F PE YW L L +G R ++D+
Sbjct: 199 GPTLKLIVDREREIQAFDPESYWELTGELAKSGGDPFEARYFYLNDEGNERERVWDEGVA 258
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
+A++ TV DV T++ P NT +R A S +G AM +AE LYT
Sbjct: 259 ETLTEALDAADGATVDDVTRRTQTDDPPTPFNTTAFIRAAGS-IGHSAQRAMSLAEDLYT 317
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGIS--KPRKG-KDVGDH 382
GYV+YPRT+ T YP++ + ++ S +G ++ + +P +G ++ DH
Sbjct: 318 AGYVTYPRTDNTVYPDDLEPEELIADLAESSTFGTDAASLIDDDDREIEPTEGDEETTDH 377
Query: 383 PPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFS------------ 429
PPI PT +L + + L D W +Y+ IVR F+ T C D +++ +
Sbjct: 378 PPIHPTGELPSASDLSDDEWEVYELIVRRFLAT-CADPATWERLRVVALANGDATPIAER 436
Query: 430 -------------------VADEMFTMEA--KYLLHPGFTGVMTWSAMKNESIPDFKPGD 468
VAD ++A K LL G+ V + + +PD + G+
Sbjct: 437 ADGLAALRDPDDAATPADLVADGGLRLKANGKRLLEAGYHEVYPYRSSDERIVPDVEVGE 496
Query: 469 LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
+ + ++T PP +S LI MEK +GT A+ I + RNYV
Sbjct: 497 TLSLSDRATEGKETQPPRRYGQSRLIEEMEKRQLGTKATRHRTIEKLYDRNYV 549
>gi|315427545|dbj|BAJ49146.1| DNA topoisomerase III [Candidatus Caldiarchaeum subterraneum]
Length = 608
Score = 214 bits (545), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 152/510 (29%), Positives = 243/510 (47%), Gaps = 26/510 (5%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKL---KLPAFLANEAKDCEF 109
++SV GH+M D Y W P E+ R+ K+ ++ L
Sbjct: 41 VSSVRGHMMEADLPDGYE-WGAKHPFEIIKL----RKVVDKISDNRVFEQLVKVFSRGGV 95
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKP-NI 168
LV+ D D EGE I +E+++ R ++ P V+R RF+++ +++ A++ NL K N+
Sbjct: 96 LVIATDNDSEGELIGYEILQVYR-RVTGGEP-VVYRMRFNSVDRRELFASLRNLEKGLNM 153
Query: 169 FEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKI 228
RQ DL G AFTR T +IS+G CQTPTL F VER +I
Sbjct: 154 RWVEKARFRQIFDLVTGAAFTRLLT---LSTRRLAPVRVISWGSCQTPTLNFVVEREKEI 210
Query: 229 RTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTK 288
+ FKP+ YW+++ TL + I+++ FK K V S K
Sbjct: 211 QQFKPQKYWVIEATLR-KASGEEFKAATQQIWNRDEAEQVFKKARKAGEAVVTSYTKSEK 269
Query: 289 SKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAV 348
+ +P + T +++R + G+ + + + E LY +GY+SYPRT+T +Y FD
Sbjct: 270 TLPRPLPMRTDDVLRDLTRITGISANRLLSMMEELYAEGYISYPRTDTNRYRRGFDFQTP 329
Query: 349 LRQQESSPDWGDHVREVLSNGIS-KPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDY 406
L+ ++ D +R+ + PR G +D G HPPI L + G ++++Y
Sbjct: 330 LKAVTAA----DALRDAKPDKAEPDPRNGSRDDGAHPPIY---LVATFRGSGVLMQIWEY 382
Query: 407 IVRHFIG-TLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFK 465
I R F D V + A+ + F+ E + G+ V ++ ++ +P+
Sbjct: 383 IARRFYANAFFDDAVQSTAKAEIGIGGIAFSAEGSSVTKQGYLQVFSYFRPRDRPLPELG 442
Query: 466 PGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS 525
G+ + I V + E +T PP LTE++L+ LMEK+GIGTDA+ I +RNY V +
Sbjct: 443 VGEKLQIIDVAIREDETKPPPRLTEADLLRLMEKNGIGTDATRAFFPQLITERNYA-VRA 501
Query: 526 GRRLVPTSLGIVLVHGYQKIDRELVEPTMR 555
GR PT LG+ L+ + D L+ P R
Sbjct: 502 GRFFKPTPLGMALIESLAEADTRLITPETR 531
>gi|448301636|ref|ZP_21491627.1| DNA topoisomerase I [Natronorubrum tibetense GA33]
gi|445583552|gb|ELY37882.1| DNA topoisomerase I [Natronorubrum tibetense GA33]
Length = 847
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 154/527 (29%), Positives = 244/527 (46%), Gaps = 48/527 (9%)
Query: 34 ACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPK 93
+V+EW G + + GH++G+DF S+Y++W V+P+EL EK K
Sbjct: 31 GVNVYEWGGK--------RCVGLSGHVVGVDFPSEYSDWRDVEPVELIDASVEK--TATK 80
Query: 94 LKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITD 153
+ A L ++ + + D D+EGE I E + VR +++ + R RFS+IT+
Sbjct: 81 ENIVATLRILSRKATRVTIATDYDREGELIGKEAYDIVR---DVDEEVPIRRVRFSSITE 137
Query: 154 KDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPC 213
+++ A + A + +ARQ +DL G A TR F G L IS G
Sbjct: 138 NEVQNAFDEPDDLDFDLAAAGEARQIIDLIWGAALTR----FLSLSAGQLGNDFISVGRV 193
Query: 214 QTPTLGFCVERHDKIRTFKPEPYWLLDLTL-----------------NLNGVAVSVTWSR 256
Q+PTL V+R +I F PE YW L L + +G W
Sbjct: 194 QSPTLKLIVDREREIEAFDPETYWELFADLRKREGETEPFDAQYFYRDEDGNEAERVW-- 251
Query: 257 GHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHA 316
+++ + ++ + + TVVDV T++ T P NT + +R AS+ +G A
Sbjct: 252 ----EETAASEVYETLAERDSATVVDVNRRTRTDTPPTPFNTTQFIRAASA-IGYSAKRA 306
Query: 317 MQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVL-SNGISKPRK 375
M IAE LYT GY++YPRT+ T YP++ D +L P GD +L S+ P +
Sbjct: 307 MSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLDDFVGHPTLGDSAESLLESDDEIVPTE 366
Query: 376 G-KDVGDHPPITPT-KLATRT-QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVAD 432
G ++ DHPPI PT ++ +R + D W +Y+ +VR F T+ ++ V D
Sbjct: 367 GDEETTDHPPIHPTGEIPSRGGDVSDDEWEVYELVVRRFYATVAEAAIWEHLKVVTEVDD 426
Query: 433 EMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESE 492
K L+ G+ V + +P G+ + + V++ E++T PP +S
Sbjct: 427 YRLKSNGKRLVEAGYHDVYPYFNSTENFVPGVDEGEELDLSEVELEEKETQPPRRYGQSR 486
Query: 493 LISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
LI ME GIGT ++ + + R YV R PT L + +V
Sbjct: 487 LIETMEDLGIGTKSTRHDILEKLYDRGYVESDPPR---PTRLAMAVV 530
>gi|257790892|ref|YP_003181498.1| DNA topoisomerase type IA central domain-containing protein
[Eggerthella lenta DSM 2243]
gi|317488397|ref|ZP_07946951.1| DNA topoisomerase [Eggerthella sp. 1_3_56FAA]
gi|325830508|ref|ZP_08163961.1| DNA topoisomerase [Eggerthella sp. HGA1]
gi|257474789|gb|ACV55109.1| DNA topoisomerase type IA central domain protein [Eggerthella lenta
DSM 2243]
gi|316912501|gb|EFV34056.1| DNA topoisomerase [Eggerthella sp. 1_3_56FAA]
gi|325487417|gb|EGC89858.1| DNA topoisomerase [Eggerthella sp. HGA1]
Length = 849
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 136/457 (29%), Positives = 218/457 (47%), Gaps = 14/457 (3%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L N AK + +++ D D+EGE I + + ++ ++N +P V RAR+SA T ++I A
Sbjct: 135 LKNLAKKADSVIIATDFDREGELIGSDALSCIQ-EVNPTAP--VSRARYSAFTKEEITHA 191
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
NLV+ ++ A + +RQ++DL G TRY T YG++ +S G QTPTL
Sbjct: 192 FDNLVELDVNLASAGASRQDIDLIWGAVLTRYLTLVKFAGYGNVRSS----GRVQTPTLA 247
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
V R + F PE YW++ + + + ++ VE T
Sbjct: 248 LVVARERERLAFVPEDYWVIRGAFGADPDSFEAPHATARFKAEAEAQAVMAHVEGATRAT 307
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQY 339
V V+ ++ P NT LM A+S G+ P M+IAE LY GY+SYPR + T Y
Sbjct: 308 VASVEKKKRTVQPPAPFNTTSLM-AAASAEGLSPARTMRIAESLYMDGYISYPRVDNTVY 366
Query: 340 PENFDLVAVLRQQESSPDWGDHVREVLSNG-ISKPRKGKDVGDHPPITPTKLATRTQLDG 398
P + DL ++ +P + + +E+L+ G ++ R K+ DHPPI PT AT L
Sbjct: 367 PSSLDLADTVKAISGNPAYAPYCKELLAKGKLTATRGKKETTDHPPIYPTAKATPDDLAP 426
Query: 399 DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKN 458
++LY+ I R F+ TL V V E F + L+ PG+ + + K+
Sbjct: 427 ADYKLYNLIARRFLATLSEAAVIEGTKVTLDVNAEPFVAKGDVLVKPGYRAIYPYGLKKD 486
Query: 459 ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQR 518
E +P G+ + +++T PP ++ +LI MEK G+GT ++ + I +R
Sbjct: 487 EQLPALSEGETVAFNGAVCTKKQTEPPARYSQGKLIQEMEKLGLGTKST----RHAIIER 542
Query: 519 NY-VTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
Y V + P+ LG+ + K + P M
Sbjct: 543 LYAVKYCMNDPIEPSQLGMAVCDALDKFAPHITHPEM 579
>gi|448498502|ref|ZP_21610852.1| DNA topoisomerase I [Halorubrum coriense DSM 10284]
gi|445698611|gb|ELZ50652.1| DNA topoisomerase I [Halorubrum coriense DSM 10284]
Length = 865
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 166/539 (30%), Positives = 256/539 (47%), Gaps = 67/539 (12%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+RMN +V+EW G + + GH++G+DF ++YN+W V+P+EL P K
Sbjct: 31 ERMND-VNVYEWGGK--------RCIGLSGHVVGVDFPAEYNDWRDVEPVELIDAPVTK- 80
Query: 89 EATPKLK-LPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRAR 147
TP + + A L A++ +V+ D D+EGE I E E VR ++N + P V R R
Sbjct: 81 --TPTQEGIVAALRRLARNASRVVIATDYDREGELIGKEAYELVR-EVNEDVP--VDRVR 135
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+IT+ +++ A N + A + +ARQ +DL G A TR+ + + GD
Sbjct: 136 FSSITENEVREAFANPDDLDFELAAAGEARQTIDLTWGAALTRFLS-LSARQLGD---DF 191
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL-NLNGVAVSVTW--------SRGH 258
IS G Q PTL V+R +I F PE YW L L +G + R
Sbjct: 192 ISVGRVQGPTLKLIVDREREIEAFDPESYWELTGELAKSSGDPFEARYFYLNDEGNERER 251
Query: 259 IFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQ 318
++D++ + +A++ TV DV T++ P NT +R A S LG AM
Sbjct: 252 VWDEAVADALTEALDAADGATVDDVTRRTQTDDPPTPFNTTAFIRAAGS-LGHSAQRAMS 310
Query: 319 IAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGIS-KPRKG- 376
+AE LYT GYV+YPRT+ T YPE+ + ++ + ++ +G +L + +P +G
Sbjct: 311 LAEDLYTAGYVTYPRTDNTVYPEDLEPEELIEELSAASTFGKDAASLLDDDREIEPTEGD 370
Query: 377 KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGD----------------- 418
++ DHPPI PT +L L D W +Y+ IVR F+ T C D
Sbjct: 371 EETTDHPPIHPTGELPAAADLSDDEWEVYELIVRRFLAT-CADPATWERLRVVALANGEA 429
Query: 419 ------------LVYTQKVAKFS--VADEMFTMEA--KYLLHPGFTGVMTWSAMKNESIP 462
L ++ AK + AD ++A K LL G+ V + + +P
Sbjct: 430 TPIAERADGLAALRDSEDAAKPADLAADGGLRLKANGKRLLEAGYHEVYPYRSSDERIVP 489
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
D + G+ + + ++T PP +S LI MEK +GT A+ I + RNYV
Sbjct: 490 DVEVGETLALSGRTTEAKETQPPRRYGQSRLIEEMEKRQLGTKATRHRTIEKLYDRNYV 548
>gi|302497521|ref|XP_003010761.1| hypothetical protein ARB_03463 [Arthroderma benhamiae CBS 112371]
gi|291174304|gb|EFE30121.1| hypothetical protein ARB_03463 [Arthroderma benhamiae CBS 112371]
Length = 473
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/396 (31%), Positives = 190/396 (47%), Gaps = 35/396 (8%)
Query: 165 KPNIFEARSVDA---RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
+P + R VDA R ELDLRIG AFTR QT Q G L ISYG CQ PTLGF
Sbjct: 27 RPIGLDERQVDAVAARIELDLRIGAAFTRLQTLQLQTLGGALAERTISYGSCQFPTLGFV 86
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV 281
V+R+ +++ FKPE +W + ++ +G+ V+ W RGH+FD++ V F+ K TV
Sbjct: 87 VDRYMRVKNFKPEAFWSIKVSHTRDGITVNFNWQRGHLFDRAAVVVLFERCLAAKTATVT 146
Query: 282 DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPE 341
V SK +P L TV+L + S L + M ++
Sbjct: 147 KVNKKPTSKWRPLPLTTVDLQMMGSKYLRIDSQAIM--------------------KFDN 186
Query: 342 NFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDA 400
DL ++ +Q S WG++ R ++ G +PR+G++ HPPI P + T L+ +
Sbjct: 187 EIDLKKLVEKQYPSEAWGEYARGLIGGGFKQPRRGRNNDKAHPPIHPVVYVSPTVLNTNE 246
Query: 401 WRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NE 459
++Y+++ R F+ D + DE F +L + V + + ++
Sbjct: 247 KKVYEFVTRRFLACCSEDAKGESTDIEIQYGDEEFHTRGLIVLERNYLDVYVYDKWESSQ 306
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
+P+F + + + E KT P YLTE ELI LM+ +GIGTDA++ HI+ I R
Sbjct: 307 PLPNFVLNESFEPKEANITEGKTVAPGYLTEPELIGLMDANGIGTDATMAEHISKIKARE 366
Query: 520 YVTVTSGR----------RLVPTSLGIVLVHGYQKI 545
YV +PT LG+ LV GY +
Sbjct: 367 YVATRPRGGGRGSGGRVDEFIPTKLGVALVEGYDNV 402
>gi|284161403|ref|YP_003400026.1| DNA topoisomerase [Archaeoglobus profundus DSM 5631]
gi|284011400|gb|ADB57353.1| DNA topoisomerase [Archaeoglobus profundus DSM 5631]
Length = 648
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 150/497 (30%), Positives = 244/497 (49%), Gaps = 28/497 (5%)
Query: 58 GHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCD 117
GHI+ DF + NNW + PLE + K + L AKD E + + D D
Sbjct: 48 GHIVEYDFPEELNNWRRT-PLEALLKAKFVVKVKEKNVVKTLL-ELAKDAERVTIATDYD 105
Query: 118 KEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDAR 177
+EGE I + AV+ +N + R RFSA+T D++ A N ++ A+S + R
Sbjct: 106 REGEFIG---LTAVKLIQKVNPGVKIERVRFSALTPVDVRRAFENPTSLDLNLAKSAEVR 162
Query: 178 QELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYW 237
++DL G TR L +S G Q+PTL VER ++I++FK + Y+
Sbjct: 163 HKVDLLWGAILTR----LLSLSANRLGRDFLSVGRVQSPTLRLIVEREEQIKSFKSKYYY 218
Query: 238 LLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALN 297
+ + + G+ +++ + +++ K V+ + S + KP N
Sbjct: 219 --NAFVKVRGI-----YAKRKFEKEEEAKAVLESINTLK---VLSFKKSVVEEKKPIPFN 268
Query: 298 TVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPD 357
T E ++ AS M P AM IAE LY +GY+SYPRT+ T YP+ +L ++ SS D
Sbjct: 269 TTEFLKEASKF--MKPDKAMAIAENLYMEGYISYPRTDNTVYPKTLNLKKLVEMFLSS-D 325
Query: 358 WGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
+ DH VL +GI R K+ DHPPI PT +A++ +L D W +Y+ +V+ F+ TL
Sbjct: 326 FKDHAEFVLKHGIEPSRGRKETSDHPPIHPTAVASKDELSKDEWTIYELVVKRFLATLAP 385
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
+ K +F ++ F K L+ G+ + +S + IPDFK G+++ ++ K+
Sbjct: 386 KAKWEVKRVEF---EQGFKAMGKKLIFAGWRLIYDYSKPEESYIPDFKVGEVLVVEEKKI 442
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
+ KT PP T LI +ME G+GT ++ I + R Y+ G + PT+L
Sbjct: 443 KKEKTKPPSRYTTGTLIKVMESLGLGTKSTRHEIIKKLYDRKYIY---GNPIRPTNLAFA 499
Query: 538 LVHGYQKIDRELVEPTM 554
+++ ++ + P M
Sbjct: 500 VINALKETAEVVTLPDM 516
>gi|403373519|gb|EJY86679.1| DNA topoisomerase [Oxytricha trifallax]
Length = 1033
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 175/316 (55%), Gaps = 5/316 (1%)
Query: 249 AVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSG 308
A+ W+R IFD+ C + + ++ + TV V S K+K KP LNT++ ++ S
Sbjct: 368 AIQFDWARYRIFDQQMCEILLENIQDGEVATVTKVISKRKTKIKPIPLNTIDFQKLVSRK 427
Query: 309 LGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSN 368
L +G H AM+IAE+LY +GY+SYPRTET +P +L +++ + +G + +++LS
Sbjct: 428 LRIGSHKAMEIAEKLYQRGYISYPRTETNIFPA-MNLQEIVKDLTKNTTFGGYAKKILSG 486
Query: 369 GI-SKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVA 426
+ PRKGK D HPPI P K A + L D WR+Y+ I +HF+ L D +
Sbjct: 487 NLYGTPRKGKQDDKAHPPIHPVKNANKMDLKHDEWRIYEIICKHFLACLSKDATGNETKI 546
Query: 427 KFSVADEMFTMEAKYLLHPGFTGVMT-WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPP 485
+ + E F ++ + + + + ++P+F+ GD ++M E +T PP
Sbjct: 547 EVEIGGETFKTRGLVIVESNWLEIYQPYEKWADNTLPNFQEGDQFTPSLIQMQESQTQPP 606
Query: 486 DYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKI 545
L+E++LIS M+K+GIGTDA+I HI I R Y + G+ +PT LG+ LV+ Y +
Sbjct: 607 KLLSEADLISRMDKNGIGTDATIHEHIKTIQDRGYA-LKQGQHFIPTQLGLNLVNAYDHV 665
Query: 546 DRELVEPTMRSAYRVQ 561
EL +P +RS Q
Sbjct: 666 GIELFKPNLRSQVERQ 681
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/190 (45%), Positives = 116/190 (61%), Gaps = 4/190 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSVCGHI+ F K +W K EL+ C EK+ + L + L AK+ + L+L
Sbjct: 6 VTSVCGHIIEYKFPQKCKDWAKTPYKELYKCKLEKQPSVQNLDIVKNLHEYAKNADMLIL 65
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI-KAAMWNLVKPNIFEA 171
WLDCD+EGE I FEV+E VR I + RA FSA+T +DI +A L +PN +A
Sbjct: 66 WLDCDREGEAIAFEVIEIVRE---IKPDIEIKRAHFSALTKQDIFRAITTRLTEPNKNQA 122
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
+V ARQE+DLRIG +FTR Q+ F+ G ++SYGPCQ PTLGF VER K+ F
Sbjct: 123 DAVFARQEIDLRIGASFTRLQSMKFKDVIGANQKQVLSYGPCQFPTLGFVVERFTKVSKF 182
Query: 232 KPEPYWLLDL 241
+PE YW + +
Sbjct: 183 EPEKYWTITI 192
>gi|315425546|dbj|BAJ47207.1| DNA topoisomerase III [Candidatus Caldiarchaeum subterraneum]
gi|343484402|dbj|BAJ50056.1| DNA topoisomerase III [Candidatus Caldiarchaeum subterraneum]
Length = 606
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 152/510 (29%), Positives = 249/510 (48%), Gaps = 26/510 (5%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKL---KLPAFLANEAKDCEF 109
++SV GH+M D Y W P E+ R+ K+ ++ L
Sbjct: 41 VSSVRGHMMEADLPDGYE-WGAKHPFEIIKL----RKVVDKISDNRVFEQLVKVFSGGGV 95
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKP-NI 168
LV+ D D EGE I +E+++ R ++ P V+R RF+++ +++ A++ NL K N+
Sbjct: 96 LVIATDNDSEGELIGYEILQVYR-RVTGGEP-VVYRMRFNSVDRRELFASLRNLEKGLNM 153
Query: 169 FEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKI 228
RQ DL G AFTR T + + +IS+G CQTPTL F VER +I
Sbjct: 154 RWVEKARFRQIFDLVTGAAFTRLLT-LSTRRLAPV--RVISWGSCQTPTLNFVVEREKEI 210
Query: 229 RTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTK 288
+ FKP+ YW+++ TL + I+++ F+ K V S K
Sbjct: 211 QQFKPQKYWVIEATLR-KASGEEFKAATQQIWNRDEAEQVFEKARKAGEAVVTSYTKSEK 269
Query: 289 SKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAV 348
+ +P + T +++R + G+ + + + E LY +GY+SYPRT+T +Y FD
Sbjct: 270 TLPRPLPMRTDDVLRDLTRITGVSANRLLSMMEELYAEGYISYPRTDTNRYRRGFDFQTP 329
Query: 349 LRQQESSPDWGDHVREVLSNGIS-KPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDY 406
L+ ++ D +R+ + PR G +D G HPPI P +AT + G ++++Y
Sbjct: 330 LKAVTAA----DALRDAKPDKAEPDPRNGSRDDGAHPPIYP--VAT-FRGSGVLMQIWEY 382
Query: 407 IV-RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFK 465
I R + D V + A+ + F+ E + G+ V ++ +++ +P+
Sbjct: 383 IACRFYANAFFDDAVQSTAKAEIGIDGIAFSAEGSSVTKQGYLQVFSYFRPRDKPLPELM 442
Query: 466 PGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS 525
G+ + I V + E +T PP LTE++L+ LMEK+GIGTDA+ I +RNY V +
Sbjct: 443 VGEKLQIIDVTIREDETKPPPRLTEADLLRLMEKNGIGTDATRASFPQLITERNYA-VRA 501
Query: 526 GRRLVPTSLGIVLVHGYQKIDRELVEPTMR 555
GR PT LG+ L+ + D L+ P R
Sbjct: 502 GRFFKPTPLGMALIESLAEADTRLITPETR 531
>gi|339444649|ref|YP_004710653.1| hypothetical protein EGYY_10740 [Eggerthella sp. YY7918]
gi|338904401|dbj|BAK44252.1| hypothetical protein EGYY_10740 [Eggerthella sp. YY7918]
Length = 850
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 141/467 (30%), Positives = 219/467 (46%), Gaps = 24/467 (5%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L N AK + +++ D D+EGE I + + ++ ++N +P V RAR+SA T ++I A
Sbjct: 135 LKNLAKKADSVIIATDFDREGELIGSDALSCIQ-EVNPTAP--VSRARYSAFTKEEITHA 191
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
NLV+ + A + +RQ++DL G TRY T YG++ +S G QTPTL
Sbjct: 192 FSNLVELDTNLASAGASRQDIDLIWGAVLTRYLTLVKFAGYGNVRSS----GRVQTPTLA 247
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKA-------- 271
V R + F PE YW++ + + + F+ FK
Sbjct: 248 LIVARERERLAFVPEDYWVIRGGFDAAAQSGPTSGDGELAFEAPHATARFKVEAEAQAAM 307
Query: 272 --VEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV 329
VE TV V+ ++ P NT LM A+S G+ P M+IAE LY GY+
Sbjct: 308 AHVEGATSATVSAVEKKKRTVAPPVPFNTTSLM-AAASAEGLSPARTMRIAESLYMDGYI 366
Query: 330 SYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNG-ISKPRKGKDVGDHPPITPT 388
SYPR + T YP + DL ++ +P + + +E+L+ G ++ R K+ DHPPI PT
Sbjct: 367 SYPRVDNTVYPSSLDLAETVKAISGNPAYAPYCKELLAKGKLTATRGKKETTDHPPIYPT 426
Query: 389 KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
AT L ++LY+ I R F+ TL V VA E F + L+ GF
Sbjct: 427 AKATPDDLAPADYKLYNLIARRFLATLSEAAVVEGTKVTLDVAGEPFVAKGDVLVKQGFR 486
Query: 449 GVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASI 508
+ + K+E +P G I +++T PP ++ +LI MEK G+GT ++
Sbjct: 487 AIYPYGLKKDEQLPALTEGQQIAFNGATCTKKQTEPPARYSQGKLIQEMEKLGLGTKST- 545
Query: 509 PVHINNICQRNY-VTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
++I +R Y V + P+ LG+ + K + P M
Sbjct: 546 ---RHSIIERLYAVKYIQNDPIEPSQLGMAVCDALDKFAPHITHPEM 589
>gi|260801483|ref|XP_002595625.1| hypothetical protein BRAFLDRAFT_56938 [Branchiostoma floridae]
gi|229280872|gb|EEN51637.1| hypothetical protein BRAFLDRAFT_56938 [Branchiostoma floridae]
Length = 346
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 164/299 (54%), Gaps = 10/299 (3%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ + MTSV GH++ LDF Y W P+ LF EK +
Sbjct: 42 IYEFEFNILNKQSSMSMTSVSGHLLELDFKGSYQKWHSCQPVALFDAGVEKHCPDQFKDI 101
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVME---AVRHQININSPKTVWRARFSAITD 153
L EA+ C+ LV+W DCD+EGENI EV++ AV+ I I +RARFS T
Sbjct: 102 KRTLEREARQCQVLVIWTDCDREGENIGTEVIDVCKAVKPNIRI------YRARFSDFTP 155
Query: 154 KDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGP 212
+ I +A NLV+P+ + +V+ R ELDLRIG AFTR+QT Q + + L +ISYG
Sbjct: 156 QSIISACCNLVQPDYRSSDAVNVRSELDLRIGAAFTRFQTLRLQKIFPNVLSDQVISYGS 215
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAV 272
CQ PTLGF VER+ I+ F PE + L ++ V W R +F+ + C V ++ V
Sbjct: 216 CQFPTLGFVVERYKAIQNFIPEMFHKLKVSHETEDGRVDFNWKRNRLFNHTACLVLYQIV 275
Query: 273 EKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSY 331
+ V+ V S KSK +PQ L TVEL ++AS L + M+IAE+LY QG V +
Sbjct: 276 MENPIARVISVNSRPKSKWRPQPLETVELEKLASRKLRINAKETMKIAEKLYNQGLVFF 334
>gi|328955028|ref|YP_004372361.1| DNA topoisomerase I [Coriobacterium glomerans PW2]
gi|328455352|gb|AEB06546.1| DNA topoisomerase I [Coriobacterium glomerans PW2]
Length = 869
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 143/472 (30%), Positives = 221/472 (46%), Gaps = 20/472 (4%)
Query: 91 TPKLKLPA------FLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVW 144
P +K PA L N AK + +++ D D+EGE I + + VR ++ + P V
Sbjct: 121 APVVKHPAEKEIIRVLKNLAKKADSIIIATDFDREGELIGADALSQVR-EVAPDVP--VA 177
Query: 145 RARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLD 204
RAR+SA+ ++ A NLV+ + A + ++RQ +DL G TRY T G +G++
Sbjct: 178 RARYSALIKGEVCGAFDNLVELDRDLADAGESRQHIDLIWGAVLTRYLTLAKFGGFGNVR 237
Query: 205 ASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKST 264
S G QTPTL V R + F PE YW + A + + D+
Sbjct: 238 ----SAGRVQTPTLALVVARERERLAFVPEDYWQIRGIGASGDTAFKIAHATARFTDEQK 293
Query: 265 CNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY 324
F V+ + T+V V + + + P NT L A+S G+ P M+IAE LY
Sbjct: 294 AKTAFAHVQGKTSGTIVKVATRARKQAPPAPFNTTSLQAAAAS-EGISPARTMRIAESLY 352
Query: 325 TQGYVSYPRTETTQYPENFDLVAVLRQ-QESSPDWGDHVREVLSNGISKPRKGK-DVGDH 382
G +SYPR + T YP + DL A++ SSP ++VL+ G KP +GK + DH
Sbjct: 353 MSGLISYPRVDNTVYPPSEDLAAIVSGLAASSPALAPVCKKVLA-GPMKPTRGKTETTDH 411
Query: 383 PPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYL 442
PPI PT + LDG +LY+ I R F+ TL G VA E T L
Sbjct: 412 PPIHPTGQGSPESLDGGQRKLYNLIARRFLATLMGPATIENTKLSIDVAGEPLTASGDVL 471
Query: 443 LHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGI 502
+ GF + ++E +P GD+I ++ + + ++T PP ++ L+ MEK G+
Sbjct: 472 VTAGFREAYPYGLKRDEQLPPLSAGDVIEVRDLALEAKQTEPPARYSQGRLVQEMEKRGL 531
Query: 503 GTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
GT ++ I + Q Y+ + P+ LG+ ++ + P M
Sbjct: 532 GTKSTRASIIERLYQVRYL---KNDPIEPSRLGMAIIDALAAYAPRITTPDM 580
>gi|256827343|ref|YP_003151302.1| topoisomerase IA [Cryptobacterium curtum DSM 15641]
gi|256583486|gb|ACU94620.1| topoisomerase IA [Cryptobacterium curtum DSM 15641]
Length = 834
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 135/441 (30%), Positives = 216/441 (48%), Gaps = 14/441 (3%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L N AK + +V+ D D+EGE I + + + H+ N P V RAR+SA T ++I A
Sbjct: 135 LKNLAKKADSVVIATDFDREGELIGSDALSQI-HEANPLLP--VSRARYSAFTKQEITTA 191
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
NLV+ + A++ +RQ++DL G TRY T YG++ +S G QTPTL
Sbjct: 192 FDNLVQLDGNLAQAGASRQDIDLIWGAVLTRYLTTVKFAGYGNVRSS----GRVQTPTLA 247
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
VE+ + F PE YW + + + + + ++ V+ T
Sbjct: 248 LIVEKERERLAFVPEDYWQIRGAFAVGDESFTAPHATARFKVEAEARSAMDRVQNAHSAT 307
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQY 339
V ++ T+ P NT LM A++ G+ P M++AE LY G++SYPR + T Y
Sbjct: 308 VSAIEKKTRRVAAPAPFNTTSLM-AAAAAEGIRPARCMRMAESLYMDGFISYPRVDNTVY 366
Query: 340 PENFDLVAVLRQQESSPDWGDHVREVLSNG-ISKPRKGKDVGDHPPITPTKLATRTQLDG 398
P + DL V+ E +P + + ++LS G + R K+ DHPPI PT +AT L
Sbjct: 367 PASLDLAEVVHMLEGNPAYRPYCAQLLSQGPLHATRGKKEETDHPPIYPTNVATPDTLPA 426
Query: 399 DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKN 458
++LY+ I R F+ TL + VA E FT + L GF + + K+
Sbjct: 427 AEFKLYNLIARRFLATLSDAALIEGTKVSLDVAGEPFTAKGDVLKEAGFRAIYPYGLKKD 486
Query: 459 ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQR 518
E +P G+ I + + +++T PP ++ LI MEK G+GT ++ ++I +R
Sbjct: 487 EQLPTLNQGEQISFEGATLEQKQTEPPARYSQGRLIQEMEKRGLGTKST----RHSIIER 542
Query: 519 NY-VTVTSGRRLVPTSLGIVL 538
Y V + P++LG+ +
Sbjct: 543 LYTVKYIQNDPIEPSALGMAV 563
>gi|448510389|ref|ZP_21615890.1| DNA topoisomerase I [Halorubrum distributum JCM 9100]
gi|448522099|ref|ZP_21618364.1| DNA topoisomerase I [Halorubrum distributum JCM 10118]
gi|445695956|gb|ELZ48052.1| DNA topoisomerase I [Halorubrum distributum JCM 9100]
gi|445702373|gb|ELZ54327.1| DNA topoisomerase I [Halorubrum distributum JCM 10118]
Length = 865
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 169/539 (31%), Positives = 253/539 (46%), Gaps = 67/539 (12%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+RMN +V+EW G + + GH++G+DF ++YN+W V+P+EL P K
Sbjct: 31 ERMND-VNVYEWGGK--------RCIGLSGHVVGVDFPAEYNDWRDVEPVELIDAPVTK- 80
Query: 89 EATP-KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRAR 147
TP K + A L A++ +V+ D D+EGE I E E VR ++N + P V R R
Sbjct: 81 --TPTKEGIVAALRRLARNASRVVIATDYDREGELIGKEAYELVR-EVNEDVP--VDRVR 135
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+IT+ +++ A N + A + +ARQ +DL G A TR+ + + GD
Sbjct: 136 FSSITENEVQEAFANPDDLDFELAAAGEARQTIDLTWGAALTRFLS-LSARQLGD---DF 191
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNG---------VAVSVTWSRGH 258
IS G Q PTL V+R +I+ F PE YW L L +G R
Sbjct: 192 ISVGRVQGPTLKLIVDREREIQAFDPESYWELTGELAKSGGDPFEARYFYLNDEGNERER 251
Query: 259 IFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQ 318
++D V +A+ TV DV T++ P NT +R A S LG AM
Sbjct: 252 VWDGDVAEVLTEALAAADAATVDDVDRRTQTDDPPTPFNTTAFIRAAGS-LGYSAQRAMS 310
Query: 319 IAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGIS-KPRKG- 376
+AE LYT GYV+YPRT+ T YPE+ + ++ + ++ +G +L +P +G
Sbjct: 311 LAEDLYTAGYVTYPRTDNTVYPEDLEPAELIEELSAASTFGTDAASLLDGDDEIEPTEGD 370
Query: 377 KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGD----------------- 418
++ DHPPI PT +L + + L D W +Y+ IVR F+ T C D
Sbjct: 371 EETTDHPPIHPTGELPSASDLSDDEWEVYELIVRRFLAT-CADPATWERLRVVALANGEA 429
Query: 419 ------------LVYTQKVAKFS--VADEMFTMEA--KYLLHPGFTGVMTWSAMKNESIP 462
L AK + VAD ++A K LL G+ V + + +P
Sbjct: 430 TPIAETADGLAALRNPDDAAKPADLVADGGLRLKANGKRLLEAGYHDVYPYRSSDERIVP 489
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
D + G+ + + ++T PP +S LI MEK +GT A+ I + RNYV
Sbjct: 490 DVEVGETLSLSDRATEGKETQPPRRYGQSRLIEEMEKRQLGTKATRHRTIEKLYDRNYV 548
>gi|229816419|ref|ZP_04446720.1| hypothetical protein COLINT_03472 [Collinsella intestinalis DSM
13280]
gi|229807961|gb|EEP43762.1| hypothetical protein COLINT_03472 [Collinsella intestinalis DSM
13280]
Length = 860
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 137/471 (29%), Positives = 219/471 (46%), Gaps = 18/471 (3%)
Query: 91 TPKLKLPA------FLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVW 144
+P +K PA L N AK + +++ D D+EGE I + + +R +
Sbjct: 122 SPIIKNPAEKEIIRVLKNLAKKADEVIIATDFDREGELIGSDALNMIRE---VAPELPAR 178
Query: 145 RARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLD 204
RAR+SA+ ++ A NLV+ + A + ++RQ +DL G TRY T G +G++
Sbjct: 179 RARYSALIKGEVTEAFANLVELDQDLADAGESRQYIDLIWGAVLTRYLTLAKFGGFGNVR 238
Query: 205 ASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKST 264
S G QTPTL VER + F PE YW + + V + DK+
Sbjct: 239 ----SAGRVQTPTLALVVERERERMAFVPEDYWQIRGLGEASDQEFKVAHTTARFTDKAA 294
Query: 265 CNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY 324
F VE E TV V ++ + P NT L + A++ G+ P M+IAE LY
Sbjct: 295 AEAAFSHVEGETTGTVTAVAKRSRKQQPPVPFNTTAL-QAAAAAEGISPARTMRIAESLY 353
Query: 325 TQGYVSYPRTETTQYPENFDLVAVLRQQES-SPDWGDHVREVLSNGISKPRKGKDVGDHP 383
G++SYPR + T YP+ D+ ++R S +P +++L+ ++ R + DHP
Sbjct: 354 MSGFISYPRVDNTVYPKTLDIEGIVRGLASGTPALAPVCKKILAGPLTPTRGKVETTDHP 413
Query: 384 PITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLL 443
PI PT T LDG +LY+ I R F+ TL G V E F L+
Sbjct: 414 PIHPTGQGDPTTLDGGQLKLYNLIARRFLATLMGPATIENTKLSIDVGGEPFAASGDVLV 473
Query: 444 HPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIG 503
GF + ++E +P GD+I ++ +K+ ++T PP ++ +L+ MEK G+G
Sbjct: 474 EAGFREAYPYGLKRDEQLPALAEGDVIDVRDIKLEAKQTEPPARYSQGKLVQEMEKRGLG 533
Query: 504 TDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
T ++ I + Y+ + P+ LGI ++ + + P M
Sbjct: 534 TKSTRASIIERLYAVRYL---KNDPIEPSQLGIAIIDALSEFAPRVTTPDM 581
>gi|294880144|ref|XP_002768906.1| prokaryotic dna topoisomerase, putative [Perkinsus marinus ATCC
50983]
gi|239871904|gb|EER01624.1| prokaryotic dna topoisomerase, putative [Perkinsus marinus ATCC
50983]
Length = 605
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 172/306 (56%), Gaps = 18/306 (5%)
Query: 49 VLFKMTSVCGHIMGLDFTSKYNN-WDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDC 107
V+ +T+V GH+MGLDF +Y WD VDP L++ P K A+ + L A+ C
Sbjct: 45 VMMVVTAVRGHLMGLDFEQEYRGRWDTVDPETLYNAPLVKSVASDMGPVAGNLRRLARTC 104
Query: 108 EFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPN 167
++LVLWLDCD+EGE I +EV+E R N+ V+RA FSA+T D+ A NL +PN
Sbjct: 105 DWLVLWLDCDREGEAIAYEVIEIAREA---NARLNVYRANFSALTHADLTRACLNLARPN 161
Query: 168 IFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDK 227
A +VDARQE+DLRIG +FTR+ T ++ + L+ ++SYGPCQ PTLGF V+R
Sbjct: 162 PHLAAAVDARQEIDLRIGASFTRFLTLRYKRRLPLLEG-ILSYGPCQFPTLGFVVQRWLL 220
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFF----KAVEKEKHVTVVDV 283
R F EP+W + T+ + V V + W R +FD + + + V + V V
Sbjct: 221 QRNFIREPFWTIKCTVRVPMVEVKLLWGRHRLFDHLATTLLYDRCLQHVRESGGGVVTHV 280
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPR---------T 334
+ KS+ +P L+TVE ++ASS L + AM+IAE Y V R T
Sbjct: 281 SHNPKSRWRPLPLSTVEFAKLASSKLRIDSRQAMRIAEEFYILETVQQIRAAACREALPT 340
Query: 335 ETTQYP 340
E+T+ P
Sbjct: 341 ESTESP 346
>gi|448424865|ref|ZP_21582643.1| DNA topoisomerase I [Halorubrum terrestre JCM 10247]
gi|445681711|gb|ELZ34140.1| DNA topoisomerase I [Halorubrum terrestre JCM 10247]
Length = 865
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 165/539 (30%), Positives = 253/539 (46%), Gaps = 67/539 (12%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+RMN +V+EW G + + GH++G+DF ++YN+W V+P+EL P K
Sbjct: 31 ERMND-VNVYEWGGK--------RCIGLSGHVVGVDFPAEYNDWRDVEPVELIDAPVTK- 80
Query: 89 EATPKLK-LPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRAR 147
TP + + A L A++ +V+ D D+EGE I E E VR ++N + P V R R
Sbjct: 81 --TPTQEGIVAALRRLARNASRVVIATDYDREGELIGKEAYELVR-EVNEDVP--VDRVR 135
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+IT+ +++ A N + A + +ARQ +DL G A TR+ + + GD
Sbjct: 136 FSSITENEVQEAFANPDDLDFELAAAGEARQTIDLTWGAALTRFLS-LSARQLGD---DF 191
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNG---------VAVSVTWSRGH 258
IS G Q PTL V+R +I+ F PE YW L L +G R
Sbjct: 192 ISVGRVQGPTLKLIVDREREIQAFDPESYWELTGELAKSGGDPFEARYFYLNDEGNERER 251
Query: 259 IFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQ 318
++D V +A+ TV DV T++ P NT +R A S LG AM
Sbjct: 252 VWDGDVAEVLTEALAAADAATVDDVDRRTQTDDPPTPFNTTAFIRAAGS-LGYSAQRAMS 310
Query: 319 IAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGIS-KPRKG- 376
+AE LYT GYV+YPRT+ T YPE+ + ++ + ++ +G +L +P +G
Sbjct: 311 LAEDLYTAGYVTYPRTDNTVYPEDLEPAELIEELSAASTFGTDAASLLDGDDEIEPTEGD 370
Query: 377 KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFS------ 429
++ DHPPI PT +L + + L D W +Y+ IVR F+ T C D +++ +
Sbjct: 371 EETTDHPPIHPTGELPSASDLSDDEWEVYELIVRRFLAT-CADPATWERLRVVALANGEA 429
Query: 430 -------------------------VADEMFTMEA--KYLLHPGFTGVMTWSAMKNESIP 462
VAD ++A K LL G+ V + + +P
Sbjct: 430 TPIAETADGLAALRNPDDATKPADLVADGGLRLKANGKRLLEAGYHDVYPYRSSDERIVP 489
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
D + G+ + + ++T PP +S LI MEK +GT A+ I + RNYV
Sbjct: 490 DVEVGETLSLSDRATEGKETQPPRRYGQSRLIEEMEKRQLGTKATRHRTIEKLYDRNYV 548
>gi|448450586|ref|ZP_21592405.1| DNA topoisomerase I [Halorubrum litoreum JCM 13561]
gi|445811700|gb|EMA61703.1| DNA topoisomerase I [Halorubrum litoreum JCM 13561]
Length = 865
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 168/539 (31%), Positives = 253/539 (46%), Gaps = 67/539 (12%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+RMN +V+EW G + + GH++G+DF ++YN+W V+P+EL P K
Sbjct: 31 ERMND-VNVYEWGGK--------RCIGLSGHVVGVDFPAEYNDWRDVEPVELIDAPVTK- 80
Query: 89 EATPKLK-LPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRAR 147
TP + + A L A++ +V+ D D+EGE I E E VR ++N + P V R R
Sbjct: 81 --TPTQEGIVAALRRLARNASRVVIATDYDREGELIGKEAYELVR-EVNEDVP--VDRVR 135
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+IT+ +++ A N + A + +ARQ +DL G A TR+ + + GD
Sbjct: 136 FSSITENEVQEAFANPDDLDFELAAAGEARQTIDLTWGAALTRFLS-LSARQLGD---DF 191
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNG---------VAVSVTWSRGH 258
IS G Q PTL V+R +I+ F PE YW L L +G R
Sbjct: 192 ISVGRVQGPTLKLIVDREREIQAFDPESYWELTGELAKSGGDPFEARYFYLNDEGNERER 251
Query: 259 IFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQ 318
++D V +A+ TV DV T++ P NT +R A S LG AM
Sbjct: 252 VWDGDVAAVLTEALAAADAATVDDVDRRTQTDDPPTPFNTTAFIRAAGS-LGYSAQRAMS 310
Query: 319 IAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGIS-KPRKG- 376
+AE LYT GYV+YPRT+ T YPE+ + ++ + ++ +G +L +P +G
Sbjct: 311 LAEDLYTAGYVTYPRTDNTVYPEDLEPAELIEELSAASTFGTDAASLLDGDDEIEPTEGD 370
Query: 377 KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGD----------------- 418
++ DHPPI PT +L + + L D W +Y+ IVR F+ T C D
Sbjct: 371 EETTDHPPIHPTGELPSASDLSDDEWEVYELIVRRFLAT-CADPATWERLRVVALANGEA 429
Query: 419 ------------LVYTQKVAKFS--VADEMFTMEA--KYLLHPGFTGVMTWSAMKNESIP 462
L AK + VAD ++A K LL G+ V + + +P
Sbjct: 430 TPIAETADGLAALRNPDDAAKPADLVADGGLRLKANGKRLLEAGYHDVYPYRSSDERIVP 489
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
D + G+ + + ++T PP +S LI MEK +GT A+ I + RNYV
Sbjct: 490 DVEVGETLSLSDRATEGKETQPPRRYGQSRLIEEMEKRQLGTKATRHRTIEKLYDRNYV 548
>gi|67624109|ref|XP_668337.1| DNA topoisomerase III beta-1 [Cryptosporidium hominis TU502]
gi|54659542|gb|EAL38114.1| DNA topoisomerase III beta-1 [Cryptosporidium hominis]
Length = 482
Score = 205 bits (522), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 96/201 (47%), Positives = 134/201 (66%), Gaps = 2/201 (0%)
Query: 358 WGDHVREVLSNGISKPRK-GKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLC 416
WG + ++L G + PRK G D+GDHPPITP + AT+ LDGD+WRLYD I RHF T+
Sbjct: 8 WGSYSSDLLQKGFNLPRKDGLDLGDHPPITPVRSATQNDLDGDSWRLYDLITRHFFATIS 67
Query: 417 GDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI-PDFKPGDLIPIQSV 475
D+ + KF + E+F + ++ GF+ + +A +I PDF +++PI+++
Sbjct: 68 NDIKIINRTIKFDINGEIFIISGNQVIDHGFSVIQGRAACHESNIIPDFTLNEVVPIKNI 127
Query: 476 KMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLG 535
+++ ++T PP L+ES+L+SLMEKHGIGTDAS+P HI I +R YV + SGRRL PT LG
Sbjct: 128 EILSKETKPPPILSESDLLSLMEKHGIGTDASMPTHIQKIQEREYVKLASGRRLEPTKLG 187
Query: 536 IVLVHGYQKIDRELVEPTMRS 556
I LVHG ID ELV P +RS
Sbjct: 188 IALVHGIMNIDHELVLPKIRS 208
>gi|323508815|dbj|BAJ77301.1| cgd6_2390 [Cryptosporidium parvum]
gi|323509797|dbj|BAJ77791.1| cgd6_2390 [Cryptosporidium parvum]
Length = 482
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 96/201 (47%), Positives = 134/201 (66%), Gaps = 2/201 (0%)
Query: 358 WGDHVREVLSNGISKPRK-GKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLC 416
WG + ++L G + PRK G D+GDHPPITP + AT+ LDGD+WRLYD I RHF T+
Sbjct: 8 WGSYSSDLLQKGFNLPRKDGLDLGDHPPITPVRSATQNDLDGDSWRLYDLITRHFFATIS 67
Query: 417 GDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI-PDFKPGDLIPIQSV 475
D+ + KF + E+F + ++ GF+ + +A +I PDF +++PI+++
Sbjct: 68 NDIKMINRTIKFDLNGEIFIISGNQVIDHGFSVIQGRAACHESNIIPDFTLNEVVPIKNI 127
Query: 476 KMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLG 535
+++ ++T PP L+ES+L+SLMEKHGIGTDAS+P HI I +R YV + SGRRL PT LG
Sbjct: 128 EILSKETKPPPILSESDLLSLMEKHGIGTDASMPTHIQKIQEREYVKLASGRRLEPTKLG 187
Query: 536 IVLVHGYQKIDRELVEPTMRS 556
I LVHG ID ELV P +RS
Sbjct: 188 IALVHGIMNIDHELVLPKIRS 208
>gi|448492196|ref|ZP_21608790.1| DNA topoisomerase I [Halorubrum californiensis DSM 19288]
gi|445691655|gb|ELZ43839.1| DNA topoisomerase I [Halorubrum californiensis DSM 19288]
Length = 865
Score = 204 bits (520), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 162/539 (30%), Positives = 253/539 (46%), Gaps = 67/539 (12%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR 88
+RMN +V+EW G + + GH++G+DF ++YN+W V+P+EL P K
Sbjct: 31 ERMND-VNVYEWGGK--------RCIGLSGHVVGVDFPAEYNDWRDVEPVELIDAPVTK- 80
Query: 89 EATPKLK-LPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRAR 147
TP + + A L A++ +V+ D D+EGE I E E VR ++N + P V R R
Sbjct: 81 --TPTQEGIVAALRRLARNASRVVIATDYDREGELIGKEAYELVR-EVNEDVP--VDRVR 135
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+IT+ +++ A N + A + +ARQ +DL G A TR+ + + + D
Sbjct: 136 FSSITENEVQEAFANPDDLDFELAAAGEARQIIDLTWGAALTRFLSLSARQRGDDF---- 191
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNG---------VAVSVTWSRGH 258
IS G Q PTL V+R +I+ F PE +W L L +G R
Sbjct: 192 ISVGRVQGPTLKLIVDREREIQAFDPESFWELTGELAKSGGDPFEARYFYLNDEGNERER 251
Query: 259 IFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQ 318
++D++ A++ TV DV T++ P NT +R A S LG AM
Sbjct: 252 VWDEAVAETLADALDAADGATVDDVTRRTQTDDPPTPFNTTAFIRAAGS-LGYSAQRAMS 310
Query: 319 IAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGIS-KPRKG- 376
+AE LYT GYV+YPRT+ T YPE+ + ++ + ++ +G +L +P +G
Sbjct: 311 LAEDLYTAGYVTYPRTDNTVYPEDLEPEELIEELSAASTFGKDAASLLDGDRDIEPTEGD 370
Query: 377 KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKV---------- 425
++ DHPP+ PT +L + L D W +Y+ IVR F+ T C D +++
Sbjct: 371 EETTDHPPVHPTGELPSAADLSDDEWEVYELIVRRFLAT-CADPATWERLRVVALANGEA 429
Query: 426 ---------------------AKFSVADEMFTMEA--KYLLHPGFTGVMTWSAMKNESIP 462
A VAD ++A K LL G+ V + + +P
Sbjct: 430 TPIAEGADGLAALRNPDDAAGAADLVADGGLRLKANGKRLLEAGYHDVYPYRSSDERIVP 489
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
D + G+ + + ++T PP +S LI MEK +GT A+ I + RNYV
Sbjct: 490 DVEVGETLSLSDRTTEGKETQPPRRYGQSRLIEEMEKRQLGTKATRHRTIEKLYDRNYV 548
>gi|449664547|ref|XP_002159450.2| PREDICTED: DNA topoisomerase 3-alpha-like [Hydra magnipapillata]
Length = 772
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 164/289 (56%), Gaps = 3/289 (1%)
Query: 270 KAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV 329
K V TV ++ S KSK +P AL+TVEL ++AS L + M+IAE+LYTQG +
Sbjct: 4 KEVLSNPRATVTNMISKPKSKWRPVALDTVELEKLASRKLKINAKETMKIAEKLYTQGII 63
Query: 330 SYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPT 388
SYPRTET +P+ +L ++ Q P WG +L+N PR+GK + HPPI P
Sbjct: 64 SYPRTETNIFPKGLNLTPLVENQTVDPQWGGFASNILANNGPNPRQGKKTDNAHPPIHPI 123
Query: 389 KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
K L G+ R+Y++IVRHF+ + D V + V + ++ E FT+ + +
Sbjct: 124 KYID--SLQGNEKRIYEFIVRHFLACVSKDAVGHETVFEIEISGEYFTVHGLVITERNYL 181
Query: 449 GVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASI 508
V + ++IP ++ G++ S+++V +T PP LTE++LI+LM+KHGIGTDA+
Sbjct: 182 DVYPYEQWNTKNIPIYQLGEVFFPDSIELVSGETCPPPLLTEADLITLMDKHGIGTDATH 241
Query: 509 PVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
HI I RNYV V +P LG+ LV GY + + +P +R++
Sbjct: 242 AEHIETIKSRNYVGVQHDGTFLPGQLGMALVEGYDAMGFAMSKPHLRAS 290
>gi|48477819|ref|YP_023525.1| DNA topoisomerase I [Picrophilus torridus DSM 9790]
gi|48430467|gb|AAT43332.1| DNA topoisomerase I [Picrophilus torridus DSM 9790]
Length = 753
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 151/507 (29%), Positives = 242/507 (47%), Gaps = 32/507 (6%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSC----PTEKREATPKLKLPAFLANEAKDCE 108
+ + GH++ DF S + +W K D L + + A LK KD +
Sbjct: 48 LVPLSGHVLEADFPSDFKDWLKSDLNLLIDSRIVYNVKNQRAINTLK-------NFKDAD 100
Query: 109 FLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNI 168
+++ D D+EGE I EV++ + + K + RA+FSA+T+K+I A N + +
Sbjct: 101 NIIIATDYDREGELIGTEVLKFL-------NAKNIKRAKFSALTEKEINDAFSNTINVDY 153
Query: 169 FEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKI 228
A S AR+E+DL G TR FF L IS G QTPTLG +R +I
Sbjct: 154 NLADSAQAREEIDLIWGAVLTR----FFSIASNRLWKDFISVGRVQTPTLGLIYKREMEI 209
Query: 229 RTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTK 288
R+F PE Y+ + +T N N + + + D+ T F V K V
Sbjct: 210 RSFVPEKYYKIKITFNKNRDFDA--YYNNELKDRKTAEKIFSEV-KNMPGRVKSFDKEEY 266
Query: 289 SKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAV 348
+P NT E +R AS LG+ P AM IAE+LY QG +SYPRT+ T Y ++ +L ++
Sbjct: 267 YIYRPAPFNTNEFLREASY-LGISPARAMNIAEKLYMQGLISYPRTDNTVYNKSINLKSI 325
Query: 349 LRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYI 407
+ + + S ++ VLS P +GK + DHPPI P + ++ +L GD ++Y+ I
Sbjct: 326 VEKLKKS-EFSMEADLVLSQEKILPSRGKTEATDHPPIYPVSVPSK-ELTGDYKKIYELI 383
Query: 408 VRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPG 467
VR F+ TL + V + A V F E + G+ + + + + +PD +
Sbjct: 384 VRRFLATLYKNAVAVRSTALIDVNGHDFISEGNIIKENGWYDIYKYKSYREYFVPDLEKN 443
Query: 468 DLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGR 527
+++ + ++ E++T PP S L+ ME +GT ++ I+ + RN+VT G
Sbjct: 444 EVLNGRDYELQEKETEPPRRYDVSSLLKAMESLNLGTKSTRHDIIDKLYSRNFVT---GN 500
Query: 528 RLVPTSLGIVLVHGYQKIDRELVEPTM 554
+ T LG + + + EP M
Sbjct: 501 PVKITPLGEGFIKSIIDTNPRISEPEM 527
>gi|210630404|ref|ZP_03296439.1| hypothetical protein COLSTE_00323 [Collinsella stercoris DSM 13279]
gi|210160486|gb|EEA91457.1| DNA topoisomerase [Collinsella stercoris DSM 13279]
Length = 863
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 138/471 (29%), Positives = 220/471 (46%), Gaps = 18/471 (3%)
Query: 91 TPKLKLPA------FLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVW 144
P +KLPA L N AK + +++ D D+EGE I + + VR +
Sbjct: 135 APIVKLPAEKEIIRVLKNLAKKADEVIIATDFDREGELIGADALNMVRE---VAPELPAR 191
Query: 145 RARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLD 204
RAR+SA+ ++ A NLV+ + A + ++RQ +DL G TRY T G +G++
Sbjct: 192 RARYSALIKGEVTEAFNNLVELDQDLADAGESRQYIDLIWGAVLTRYLTLAKFGGFGNVR 251
Query: 205 ASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKST 264
S G QTPTL VER + F PE YW + +G + + DK+
Sbjct: 252 ----SAGRVQTPTLALVVERERERMAFVPEDYWQIRGMGEASGQEFKIAHTTVRFTDKAA 307
Query: 265 CNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY 324
F V + TV V ++ + P NT L + A++ G+ P M+IAE LY
Sbjct: 308 AEAAFAHVSGAETGTVTAVAKRSRKQQPPVPFNTTAL-QAAAAAEGISPARTMRIAESLY 366
Query: 325 TQGYVSYPRTETTQYPENFDLVAVLRQQES-SPDWGDHVREVLSNGISKPRKGKDVGDHP 383
G++SYPR + T YP+ D+ +++ S +P ++VL+ ++ R + DHP
Sbjct: 367 MSGFISYPRVDNTVYPKTLDIEGIVKGLASGTPALAPVCKKVLAGPLTPTRGKVETTDHP 426
Query: 384 PITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLL 443
PI PT T LDG +LY+ I R F+ TL G VA E F L+
Sbjct: 427 PIHPTGQGDPTTLDGGQLKLYNLIARRFLATLMGPATIENTKLSIDVAGEPFAASGDVLV 486
Query: 444 HPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIG 503
GF + ++E +P GD+I ++ +K+ ++T PP ++ +L+ MEK G+G
Sbjct: 487 EAGFREAYPYGLKRDEQLPALAEGDVIDVRDIKLEAKQTEPPTRYSQGKLVQEMEKRGLG 546
Query: 504 TDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
T ++ I + Y+ + P+ LGI ++ + + P M
Sbjct: 547 TKSTRASIIERLYAVRYL---KNDPIEPSQLGIAIIDALSQFAPRVTTPEM 594
>gi|139439563|ref|ZP_01772995.1| Hypothetical protein COLAER_02022 [Collinsella aerofaciens ATCC
25986]
gi|133775116|gb|EBA38936.1| DNA topoisomerase [Collinsella aerofaciens ATCC 25986]
Length = 785
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 146/478 (30%), Positives = 223/478 (46%), Gaps = 24/478 (5%)
Query: 91 TPKLKLPA------FLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVW 144
P +KLPA L N AK + +++ D D+EGE I + + VR ++ + P V
Sbjct: 43 APVIKLPAEKELIRSLKNLAKKSDSVIIATDFDREGELIGSDALNKVR-EVAPDLP--VA 99
Query: 145 RARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLD 204
RA++S+ T +I A NLV + A + ++RQ +DL G TRY T G +G++
Sbjct: 100 RAQYSSFTKAEITQAFDNLVSLDQNLADAGESRQHIDLIWGAVLTRYLTLAKFGGFGNVR 159
Query: 205 ASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGH----IF 260
S G QTPTL VER + F PE YW + G A + H
Sbjct: 160 ----SAGRVQTPTLALVVERERERMAFVPEDYWQIRGMGAAQGAAEDDRFKIAHKTARFT 215
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
DK + V+ TV V ++ + P T L + A++ G+ P M+IA
Sbjct: 216 DKDAAEAAYGHVDGVATATVAAVTKRSRKQQPPTPFATTSL-QAAAAAEGISPARTMRIA 274
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQ-QESSPDWGDHVREVLSNGISKPRKGK-D 378
E LY G +SYPR + T YP DL AV+ + +P ++VL+ G KP +GK +
Sbjct: 275 ESLYMAGLISYPRVDNTVYPATLDLGAVVSDLAKINPALAPVCKKVLA-GPMKPTRGKVE 333
Query: 379 VGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
DHPPI PT + LDG +LYD I R F+ TL G + V E F
Sbjct: 334 TTDHPPIYPTGEGDPSALDGGQRKLYDLIARRFLATLMGPATIENTKLELDVNGEPFVAS 393
Query: 439 AKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
L+ PGF + ++E +P + GD + + +K+ ++T PP ++ +L+ ME
Sbjct: 394 GDVLVTPGFREAYPYGLKRDEQMPPLEQGDAVDVFDIKLEAKQTEPPARYSQGKLVQEME 453
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
K G+GT ++ I + Y+ + P+ LGI ++ + + P M S
Sbjct: 454 KRGLGTKSTRASIIERLYAVRYL---KNDPVEPSQLGIAIIDALSQFAPRITSPDMTS 508
>gi|339261980|ref|XP_003367635.1| DNA topoisomerase domain protein [Trichinella spiralis]
gi|316961872|gb|EFV48437.1| DNA topoisomerase domain protein [Trichinella spiralis]
Length = 549
Score = 199 bits (506), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/212 (49%), Positives = 136/212 (64%), Gaps = 5/212 (2%)
Query: 355 SPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDA-WRLYDYIVRHFIG 413
S + + +L G+ P+ G+D GDHPPITP + + RLY+Y+V HF+
Sbjct: 7 SGQFASVAQAILDRGVRMPKSGQDAGDHPPITPLGHVGEPKFTSTSEARLYEYVVCHFLA 66
Query: 414 TLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW---SAMKNESIPDFKPGDLI 470
TL G+ VY + + +A E FT+ + + PGFT V TW +A +N GD
Sbjct: 67 TLMGNCVYELRTIQLDLAGERFTLTSSRPIDPGFTEVFTWQQVTANENSLPATVNVGDRW 126
Query: 471 PIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT-SGRRL 529
+ + M + +T+PPD+LTE+ELI+LME+HGIGTDASIPVHINNICQRNYVTV S RRL
Sbjct: 127 NVVDLLMDQGQTSPPDHLTETELITLMERHGIGTDASIPVHINNICQRNYVTVQESSRRL 186
Query: 530 VPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
VPT LG++LVHGY KID +LVE MRSA Q
Sbjct: 187 VPTQLGVILVHGYWKIDCQLVEAEMRSAIEHQ 218
>gi|303233186|ref|ZP_07319859.1| DNA topoisomerase [Atopobium vaginae PB189-T1-4]
gi|302480771|gb|EFL43858.1| DNA topoisomerase [Atopobium vaginae PB189-T1-4]
Length = 918
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 134/478 (28%), Positives = 223/478 (46%), Gaps = 36/478 (7%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKA 158
L N AK +V+ D D+EGE I + + HQ+ +P V+RAR+SA T ++I
Sbjct: 137 LKNLAKKASSIVIATDFDREGELIGSDAL----HQMQQVAPDIPVFRARYSAFTKQEIDT 192
Query: 159 AMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTL 218
A +LV + A + ++RQ +DL G TRY T ++ L ++ S G QTPTL
Sbjct: 193 AFSHLVTLDQNLADAGESRQYIDLVWGAVLTRYLT---MARFSGL-GNVRSAGRVQTPTL 248
Query: 219 GFCVERHDKIRTFKPEPYWLLDLTLNLNGV--------------------AVSVTWSRGH 258
VE+ + + F PE YW++ TL+ + T +
Sbjct: 249 ALVVEKERERQAFIPEDYWVISATLHEGAEGAEGANAAGAGAAINADADGSFKATHTTAR 308
Query: 259 IFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQ 318
+KS + + AV+ + + + +++ P NT L + A++ G+ P M+
Sbjct: 309 FTNKSEADAVYAAVKDASCARITNREEKSRTTRPPAPFNTTSL-QAAAAAEGLSPARTMR 367
Query: 319 IAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKD 378
IAE LY +G +SYPR + T YP + +L + + P + + ++L+ +GK
Sbjct: 368 IAESLYMEGLISYPRVDNTVYPSSLNLRECVTMLKKVPQYRPYCEQLLAQPQLHATRGKQ 427
Query: 379 -VGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTM 437
DHPPI PT A +L AW+LY+ I R F+ TL V Q + ++ F
Sbjct: 428 QTTDHPPIYPTAPADPQKLQPAAWKLYNLIARRFLATLSQQSVSLQTKLTIDINEQPFVA 487
Query: 438 EAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLM 497
L PGF + + K++ +P+ +PGD+ + +++ ++T PP ++ LI M
Sbjct: 488 TGVVLATPGFRAIYPFGLRKDDVLPNLQPGDVASVLAIQYDAKQTEPPARYSQGRLIQEM 547
Query: 498 EKHGIGTDASIPVHINNICQRNY-VTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
EK G+GT ++ +I QR Y V P+ LG ++ + + P M
Sbjct: 548 EKRGLGTKST----RASIIQRLYDVKYLKDDPACPSQLGCAVIDALSQYAPHITTPEM 601
>gi|47211975|emb|CAF95297.1| unnamed protein product [Tetraodon nigroviridis]
Length = 984
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 174/315 (55%), Gaps = 14/315 (4%)
Query: 239 LDLTLNLNGV---AVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQA 295
LDL + L+ V V +W R +F+ + C V ++ + TV V S KSK +P
Sbjct: 185 LDLRIVLHEVEEDTVEFSWKRNRLFNHTACLVLYQICMENPIATVTSVTSKPKSKWRPLP 244
Query: 296 LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESS 355
L+TVEL ++AS L + M+IAE+LYTQG++SYPRTET +P+ L +++ +Q S
Sbjct: 245 LDTVELEKLASRKLKISAKETMKIAEKLYTQGFISYPRTETNIFPKTLALGSLVEEQTQS 304
Query: 356 PDWGDHVREVLSN-GISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVRHFIG 413
WG + VL G PR+GK HPPI PT+ + + L G+ RLY++IVRHF+
Sbjct: 305 SVWGTFAQRVLDQPGGPSPRQGKKSDQAHPPIHPTRHS--SSLQGNEGRLYEFIVRHFLA 362
Query: 414 TLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQ 473
+ D + + V +A E F+ ++ + V + + IP ++ G
Sbjct: 363 CVSQDALGQETVVDVDIAQEKFSASGLMIIARNYLDVYPYDRWSTKVIPVYEQGSQFQPT 422
Query: 474 SVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC-------QRNYVTVTSG 526
+++MV+ +T+PP LTE++LI+LMEKHGIG + +H N C R YV +TS
Sbjct: 423 AIEMVDGQTSPPQLLTEADLIALMEKHGIGRLQWLFLHGCNPCGHIETIKSRMYVGLTSD 482
Query: 527 RRLVPTSLGIVLVHG 541
+R +P LG+ LV G
Sbjct: 483 QRFLPGELGMGLVEG 497
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ L G V MTSV GH++ L+F + + W +P+ LF EK +++
Sbjct: 45 IYEFEYHLLGQNVTVAMTSVSGHLLALEFKAPFQKWHSCNPVILFDAEVEKYCPDNMVQI 104
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L E K C+ LV+W DCD+EGENI FE+++ + + S V RA+FS IT I
Sbjct: 105 KRTLEKEVKQCQLLVIWTDCDREGENIGFEIIDVCK---AVKSNIQVLRAKFSEITPNSI 161
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRI 184
+ A L +P+ + +VD RQELDLRI
Sbjct: 162 RRACSTLTEPDSNVSDAVDVRQELDLRI 189
>gi|312381313|gb|EFR27087.1| hypothetical protein AND_06414 [Anopheles darlingi]
Length = 1456
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 158/280 (56%), Gaps = 5/280 (1%)
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQY 339
VV+V K+K +P ++TVEL ++ S L M H M IAE+LYTQG +SYPRTET +
Sbjct: 734 VVNVTEKPKNKWRPTPMDTVELEKLGSRKLKMNAKHVMTIAEKLYTQGIISYPRTETNMF 793
Query: 340 PENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDG 398
+ +LV +++ Q ++ WG +VL G++ PR GK HPPI PTKL T L G
Sbjct: 794 TSDMNLVPLVQAQVANQQWGSFAEKVLEWGVN-PRNGKKSDQAHPPIHPTKLP--TNLSG 850
Query: 399 DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVAD-EMFTMEAKYLLHPGFTGVMTWSAMK 457
D WR+Y+ I RHF+ + D ++ + VAD E FT + + V +
Sbjct: 851 DEWRVYELIARHFLACVSRDATGSETIVNVVVADEEEFTASGLCIYERNYLEVYPYDRWN 910
Query: 458 NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQ 517
+ I ++ G + + E TT P+ LTE++LI+LMEKHGIGTDA+ HIN I +
Sbjct: 911 AKEIHVYRVGHTFEPTELGLHEGSTTAPNMLTEADLIALMEKHGIGTDATHAEHINTIKE 970
Query: 518 RNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
R Y+ LVP +LG+ LV GY+ ++ L P +R+
Sbjct: 971 RGYIGERDRGFLVPGTLGMGLVEGYEMMELRLAHPELRAG 1010
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ L G + MTSV GH++ +F + W P +LF P K K+
Sbjct: 565 IYEFDYNLHGQSIKMVMTSVSGHLLNHEFLPSFRGWQSCSPEDLFDAPVRKSCPESYDKI 624
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L E + C L++W DCD+EGENI FE++E + I V RA+FS IT I
Sbjct: 625 KRTLEREVRGCTALIIWTDCDREGENIGFEIIEVCKA---IKPQLKVLRAKFSEITGPSI 681
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQ 197
K A+ NL++P+ + +V+ R ELDLRIG AFTRYQT Q
Sbjct: 682 KRAIENLIQPDARQNAAVNVRSELDLRIGAAFTRYQTLRLQ 722
>gi|76156854|gb|AAX27967.2| SJCHGC07190 protein [Schistosoma japonicum]
Length = 164
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 111/159 (69%)
Query: 265 CNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY 324
+VF V+ K V+ V K K +PQ LNTVE++RVAS+GLG+GPH AM +AERLY
Sbjct: 1 ASVFLSRVKASKTAEVIQVSVKQKIKPRPQGLNTVEMLRVASAGLGIGPHDAMAVAERLY 60
Query: 325 TQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPP 384
T GY++YPRTETT YP FDL +L+QQ +SP WGD REVL NG++ PR G D GDHPP
Sbjct: 61 TSGYINYPRTETTAYPNTFDLRGLLQQQVNSPVWGDLAREVLHNGLTPPRAGHDAGDHPP 120
Query: 385 ITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQ 423
I P + A+ L +++RLY+YIV+HFI T+ D Y Q
Sbjct: 121 IAPMRFASSQDLGHESYRLYEYIVQHFIATIMPDCCYEQ 159
>gi|307103756|gb|EFN52014.1| hypothetical protein CHLNCDRAFT_27302 [Chlorella variabilis]
Length = 307
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 107/279 (38%), Positives = 149/279 (53%), Gaps = 15/279 (5%)
Query: 35 CSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPK- 93
C ++E+ + G TSV GH++ L+F + W P EL+ K PK
Sbjct: 37 CKIYEFPFTVAGRQADMVFTSVAGHLLELEFEGRVRGWHSCAPRELYDAQVFK--GVPKN 94
Query: 94 LKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITD 153
K+ L A+ C++LVLWLDCD+EGENI FEV V ++ I RARFSA+
Sbjct: 95 EKMKRNLQQLARSCDWLVLWLDCDREGENIAFEVCTEVNPRLVIK------RARFSALIY 148
Query: 154 KDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKY------GDLDASL 207
D+ AM NLV PN EA++VDARQE+DLRIG +FTR QT Q K+ GD L
Sbjct: 149 ADVARAMANLVPPNEHEAQAVDARQEIDLRIGASFTRLQTLLLQNKFDWGEMAGDNGRVL 208
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNV 267
+SYGPCQ PTLG V+R +I+ PE +W + + A W RG ++D + +
Sbjct: 209 LSYGPCQFPTLGLIVQRAWEIQAHIPENFWYIQVLYRDGPKACEFRWHRGRLYDAAVAGM 268
Query: 268 FFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVAS 306
+ TV V+ + K+K P L+T+E+ + S
Sbjct: 269 LHELCAASPLATVAAVEGARKTKWAPAPLSTLEMQKRGS 307
>gi|324511395|gb|ADY44747.1| DNA topoisomerase 3 [Ascaris suum]
Length = 469
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 149/252 (59%), Gaps = 2/252 (0%)
Query: 311 MGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGI 370
M AM +AE+LY++G++SYPRTET ++P N DL ++ QQ ++ +WG+ +EVL+ G
Sbjct: 1 MSAKDAMAVAEKLYSKGFISYPRTETNKFPSNLDLNPLIEQQVANAEWGEFAQEVLNRG- 59
Query: 371 SKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFS 429
+ PR G K HPPI P K A ++L G W +Y+ +VRHF+ + D + +
Sbjct: 60 ANPRNGTKSDEAHPPIHPLKFALPSELVGYEWSIYELVVRHFLACVSIDARGQETKVQIK 119
Query: 430 VADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLT 489
+ DE FT + G+ V + ++++P ++ G+++ +V M E T PP L+
Sbjct: 120 MGDESFTATGLVVEELGYLKVYKYEKWGDKTLPQYREGEVLHNCAVTMSEGHTQPPPLLS 179
Query: 490 ESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDREL 549
E++LI+LM+K+GIGTDA+ HI I QR Y + + +R VP LG+ LV GY ++ +
Sbjct: 180 EADLIALMDKYGIGTDATHAEHIETIKQRRYAALNAEKRFVPGYLGLALVDGYDRMGYAM 239
Query: 550 VEPTMRSAYRVQ 561
+P MR+ Q
Sbjct: 240 SKPHMRADLESQ 251
>gi|124513658|ref|XP_001350185.1| DNA topoisomerase III, putative [Plasmodium falciparum 3D7]
gi|23615602|emb|CAD52594.1| DNA topoisomerase III, putative [Plasmodium falciparum 3D7]
Length = 710
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 173/315 (54%), Gaps = 8/315 (2%)
Query: 249 AVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSG 308
V TWSR +FD + ++ + K + +V S K KP LNT+++ ++ S
Sbjct: 339 VVDFTWSRIRLFDHLAVILIYEELLKNPLCKITNVYESETRKYKPYPLNTLQMTKLVSIY 398
Query: 309 LGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLS- 367
+ M +AE+LY +GY+SYPRTET +P++ +L ++ + + ++G + ++
Sbjct: 399 FKISSKECMMLAEKLYNKGYISYPRTETNYFPDSMNLHKIINELRKNDNFGWYANKLCEE 458
Query: 368 NGISKPRKGK-DVGDHPPITPTKLATRT-QLDGDAWRLYDYIVRHFIGTLCGDLV-YTQK 424
+ KPRKGK + HPPI P K ++ +++ W+LY++I +HF+ D + Y K
Sbjct: 459 HKYQKPRKGKMNDKAHPPIHPVKNMNKSLKVEEKEWKLYEFICKHFLAVCSNDAIGYNTK 518
Query: 425 VAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTP 484
V + +E F + + + + T+ ++ IP F+ D S+ + E T P
Sbjct: 519 VTA-KIQEEQFFCKGLKIKEKNYLEIYTYEKWNDKIIPSFQVDDEFYPTSLLIEEGITQP 577
Query: 485 PDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQK 544
P YL+ES L++LM+K IGTDA++ HI NI +RNYV S +PT+LGI LV Y+K
Sbjct: 578 PKYLSESNLLTLMDKFSIGTDATMHEHIENIQKRNYVIKNSKSLFIPTNLGIALVQSYKK 637
Query: 545 ---IDRELVEPTMRS 556
I +L +P++R+
Sbjct: 638 FKDIGIDLTDPSLRA 652
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 120/209 (57%), Gaps = 10/209 (4%)
Query: 46 GDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAK 105
D+ +TSV GH+ F +Y NW DP ELF K + L +K
Sbjct: 49 NDIWYMYVTSVTGHLTDQKFDDRYKNWHNTDPQELFDAEITVYVEKDKKNIENNLKKYSK 108
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
+C L+LWLDCD+EGE+ICFEV+ A R N + RA+FSA+T+KDI A+ NL +
Sbjct: 109 ECNMLILWLDCDREGEHICFEVINACRI---TNRKLIIHRAQFSAVTEKDIIHAINNLKE 165
Query: 166 PNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL---DASLISYGPCQTPTLGFCV 222
PN A SVD R+E+DLR+G FTR+ T +Y +L + S+ISYGPCQ PTLGF V
Sbjct: 166 PNKNLAYSVDVRREIDLRMGSIFTRFMT----IRYIELVKHETSIISYGPCQFPTLGFVV 221
Query: 223 ERHDKIRTFKPEPYWLLDLTLNLNGVAVS 251
R+ I+ FK E YW + + N ++
Sbjct: 222 NRYLDIKNFKNEYYWSIKMKYVYNNDEIN 250
>gi|82914812|ref|XP_728858.1| DNA topoisomerase III [Plasmodium yoelii yoelii 17XNL]
gi|23485425|gb|EAA20423.1| DNA topoisomerase iii [Plasmodium yoelii yoelii]
Length = 677
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 168/315 (53%), Gaps = 5/315 (1%)
Query: 247 GVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVAS 306
V TWSR +FD + ++ + K + ++ K +P LNT+++ ++ S
Sbjct: 307 NYVVDFTWSRLKLFDHLGVVLIYEDLLKNPLCRISNIFEKEVKKYRPFPLNTLQMTKLVS 366
Query: 307 SGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVL 366
+ M IAE+LY +GY+SYPRTET + ++ +L ++ + + + +G + ++
Sbjct: 367 KYFHISSKECMNIAEKLYNKGYISYPRTETNYFVDSMNLRKIIHELKKNNIFGSYATKLA 426
Query: 367 SNGISKPRKGK-DVGDHPPITPTK-LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQK 424
KPRKGK + HPPI P K + +D W++Y++I RHF+ D +
Sbjct: 427 EKNSCKPRKGKLNDKAHPPIHPVKNMNKANNVDFKEWKIYEFICRHFLAVCSDDAIGFDT 486
Query: 425 VAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTP 484
++ +E F + + + + + + ++ +P F+ D S+ + E T P
Sbjct: 487 KVIANIGEEQFYCKGLKIKNKNYLEIYIYEKWNDKILPPFQINDEFYPYSLVVEEXITQP 546
Query: 485 PDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQK 544
P YL+ES+L+SLM+K+GIGTDA++ HI NI +RNYV S +PT LGI L+ Y+K
Sbjct: 547 PKYLSESDLLSLMDKYGIGTDATMHEHIENIQKRNYVYKNSKNLFIPTKLGIALILSYKK 606
Query: 545 ---IDRELVEPTMRS 556
I +L EP++R+
Sbjct: 607 FKDIGVDLTEPSLRA 621
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 121/215 (56%), Gaps = 21/215 (9%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+ F KY NW+ DP ELF K + L +KDC L+L
Sbjct: 56 VTSVTGHLTDQKFDDKYKNWNNTDPHELFDAKITIYIDKDKKPIENNLKKYSKDCNVLIL 115
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGE+ICFEV+ A N + RA+FSA+T+KDIK A+ NL PN A+
Sbjct: 116 WLDCDREGEHICFEVINACSVT---NKKLKIHRAQFSAVTEKDIKYAINNLKSPNKNLAQ 172
Query: 173 SVDARQELDLRIGCAFTRYQT-KFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
SVD R+E+DLR+G FTR+ T ++F K D +ISYGPCQ PTLGF V R+ +I+ F
Sbjct: 173 SVDVRREIDLRMGSIFTRFMTIRYF--KLVQNDTKIISYGPCQFPTLGFVVNRYLQIKNF 230
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCN 266
E YW + + G+++ CN
Sbjct: 231 NNEYYWTIKM---------------GYLYQDKNCN 250
>gi|403309311|ref|XP_003945052.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Saimiri boliviensis
boliviensis]
Length = 586
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/171 (54%), Positives = 119/171 (69%), Gaps = 3/171 (1%)
Query: 126 EVMEAVRHQINI--NSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLR 183
+V++AV +N KTV+RARFS+ITD DI AM L +P+ EA SVDARQELDLR
Sbjct: 217 QVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQELDLR 276
Query: 184 IGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL 243
IGCAFTR+QTK+FQGKYGDLD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L +
Sbjct: 277 IGCAFTRFQTKYFQGKYGDLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKV 336
Query: 244 NLN-GVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKP 293
N + ++ + W R +FD+ + + EK V K+K +P
Sbjct: 337 NTDKDRSLLLDWDRVRVFDREIAQMSLNMTKLEKEAQVEATSRKEKAKQRP 387
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 74/107 (69%), Gaps = 1/107 (0%)
Query: 398 GDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK 457
GDAWRLY+YI RHF+ T+ D Y Q F + E+FT K +L PGFT +M W ++
Sbjct: 437 GDAWRLYEYITRHFVATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPGFTEIMPWQSVP 496
Query: 458 -NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIG 503
ES+P + GD + VKM+E++T+PPDYLTE+ELI+LME+HGIG
Sbjct: 497 LEESLPTCQRGDTFTVSEVKMLEKQTSPPDYLTEAELITLMERHGIG 543
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 25 LTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-C 83
L+ + +NGACSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS
Sbjct: 26 LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQA 85
Query: 84 PTEKREATPKLKLPAFL 100
PTEK+EA PKL + FL
Sbjct: 86 PTEKKEANPKLNMVKFL 102
>gi|70952526|ref|XP_745425.1| DNA topoisomerase III [Plasmodium chabaudi chabaudi]
gi|56525744|emb|CAH76018.1| DNA topoisomerase III, putative [Plasmodium chabaudi chabaudi]
Length = 675
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 168/313 (53%), Gaps = 6/313 (1%)
Query: 249 AVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSG 308
V TWSR +FD + ++ + K + ++ K +P LNT+++ ++ S
Sbjct: 308 VVDFTWSRLKLFDHLGVVLIYEDLLKNPLCRISNIFEKEVKKYRPFPLNTLQMTKLVSKY 367
Query: 309 LGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSN 368
+ M IAE+LY +GY+SYPRTET + ++ +L + + + + +G + ++ N
Sbjct: 368 FHISSKECMNIAEKLYNKGYISYPRTETNYFVDSMNLRKFIHELKKNNIFGSYAAKLAEN 427
Query: 369 GISKPRKGK-DVGDHPPITPTK-LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVA 426
G KPRKGK + HPPI P K + +D W++Y++I RHF+ D +
Sbjct: 428 GSCKPRKGKLNDKAHPPIHPVKNMNKANNVDFKEWKIYEFICRHFLAVCSDDAIGFDTKV 487
Query: 427 KFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPD 486
++ E F + + + + + + ++ +P F+ D S+ +VE T P
Sbjct: 488 VANIGAEQFYCKGLKIKNKNYLEIYIYEKWNDKILPPFQINDEFYPYSL-IVEEGITQPK 546
Query: 487 YLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQK-- 544
YL+ES+L+SLM+K+GIGTDA++ HI NI +RNYV S +PT LGI L+ Y+K
Sbjct: 547 YLSESDLLSLMDKYGIGTDATMHEHIENIQKRNYVYKNSKNLFIPTKLGIALILSYKKFK 606
Query: 545 -IDRELVEPTMRS 556
I +L EP++R+
Sbjct: 607 DIGVDLTEPSLRA 619
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/190 (46%), Positives = 115/190 (60%), Gaps = 6/190 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+ F KY NW+ DP ELF K + L +KDC L+L
Sbjct: 56 VTSVTGHLTDQKFDEKYKNWNNTDPHELFDAKITIYIDKDKKPIENNLKKYSKDCNVLIL 115
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGE+ICFEV+ A N + RA+FSA+T+KDIK A+ NL PN A+
Sbjct: 116 WLDCDREGEHICFEVINACSVT---NKKLKIHRAQFSAVTEKDIKYAINNLKSPNKNLAQ 172
Query: 173 SVDARQELDLRIGCAFTRYQT-KFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
SVD R+E+DLR+G FTR+ T ++F K D +ISYGPCQ PTLGF V R+ +I+ F
Sbjct: 173 SVDVRREIDLRMGSIFTRFMTIRYF--KLVQNDTKIISYGPCQFPTLGFVVNRYLQIKNF 230
Query: 232 KPEPYWLLDL 241
E YW + +
Sbjct: 231 NNEYYWTIKM 240
>gi|223476951|ref|YP_002581633.1| DNA topoisomerase I [Thermococcus sp. AM4]
gi|214032177|gb|EEB73007.1| DNA topoisomerase I [Thermococcus sp. AM4]
Length = 719
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 156/559 (27%), Positives = 259/559 (46%), Gaps = 24/559 (4%)
Query: 8 LVPASEIKLARPSLISLL--TPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDF 65
L+ A + +AR +L P+++ G S +E+ G V+ + GH+ L
Sbjct: 4 LIIAEKPNVARKIAYALAEGKPVRKTIGKVSYYEFTRD--GKKVI--VAPAVGHLFSLAP 59
Query: 66 TSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICF 125
+K + D + EK + K + A LA AK + ++ D D EGE I +
Sbjct: 60 KTKTYGYPVFDIEWVPVYVAEKGKGYAKDYIKA-LATLAKKADEFIVACDYDTEGEVIGY 118
Query: 126 EVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKP--NIFEARSVDARQELDLR 183
A+++ ++ P R +FSA+T KD+ A +NL +P N A + AR LD
Sbjct: 119 T---ALKYACGVD-PSKAKRMKFSALTKKDLLKAWYNL-EPTINFGMADAGIARHVLDWY 173
Query: 184 IGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL 243
G +R T + G ++S G Q PTL F VER +I++FKP+PYW++ + L
Sbjct: 174 WGVNLSRALTSAIKRASGKW--MVLSTGRVQGPTLKFLVEREKEIQSFKPKPYWVIKMIL 231
Query: 244 NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEK-EKHVTVVDVQSSTKSKTKPQALNTVELM 302
G + T+ + I+D+ + +K V V+V+ ++ P L T L
Sbjct: 232 EKEGKQYTATYEKDKIWDEEEAKRIVQEAKKGPAFVEKVEVKQQKRNPPVPFDLGT--LQ 289
Query: 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHV 362
R A S G P ++IA+RLY +GY SYPRT + + P+N + ++L+ P++
Sbjct: 290 REAYSAFGYSPKKTLEIAQRLYEKGYTSYPRTSSQKLPKNLNFRSILQNLAKLPEYKPFA 349
Query: 363 REVLSNGISKPRKG-KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLV 420
E+L G KP +G K+ HP I PT +L +L D +YD +VR F+ V
Sbjct: 350 HELLGKGNLKPVEGKKEDPAHPAIYPTGELPKPGELSKDEKNIYDLVVRRFLALFMEPAV 409
Query: 421 YTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI-PDFKPGDLIPIQSVKMVE 479
+ F + L G+ V +E I P F+ G+ + + +K +
Sbjct: 410 RESVKVIINSNGHRFILSGARTLKEGWLKVYGKYVKFDEVILPQFREGEPVKVVQIKREK 469
Query: 480 RKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
+KT PP + + +I ME GIGT A+ + + R Y + +++ T LG+ +V
Sbjct: 470 KKTKPPARYSPAAVIKKMEDLGIGTKATRAQILETLYSRGY--IEGKKKIKVTPLGMRVV 527
Query: 540 HGYQKIDRELVEPTMRSAY 558
+K ++V + A+
Sbjct: 528 EALEKNVPDIVSVELTRAF 546
>gi|240103365|ref|YP_002959674.1| DNA topoisomerase I (topA) [Thermococcus gammatolerans EJ3]
gi|239910919|gb|ACS33810.1| DNA topoisomerase I (topA) [Thermococcus gammatolerans EJ3]
Length = 712
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 138/465 (29%), Positives = 222/465 (47%), Gaps = 17/465 (3%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
LA AK + ++ D D EGE I + A+++ ++ P R +FSA+T KD+ A
Sbjct: 93 LATLAKRADEFIVACDYDTEGEVIGYT---ALKYACGVD-PSKAKRMKFSALTKKDLLKA 148
Query: 160 MWNLVKP--NIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPT 217
+NL +P N A + AR LD G +R T + G ++S G Q PT
Sbjct: 149 WYNL-EPTINFGMADAGIARHVLDWYWGVNLSRALTSAIKRASGKW--MVLSTGRVQGPT 205
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCN-VFFKAVEKEK 276
L F VER +I+ FKP+PYW++ + L N + T+ + I+D+ + +A +
Sbjct: 206 LKFLVEREKEIQNFKPKPYWVIKMILEKNNSQYTATYEKDKIWDEEEAKRIVSEAKKGPA 265
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTET 336
V V+V+ ++ P L T L R A S G P +++A+RLY +G SYPRT +
Sbjct: 266 FVEKVEVKQQKRNPPVPFDLGT--LQREAYSAFGYSPKKTLELAQRLYERGLSSYPRTSS 323
Query: 337 TQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPT-KLATRT 394
+ P+N + ++L+ P++ E+L G KP +G K+ HP I PT +L
Sbjct: 324 QKLPKNLNFRSILQNIAKLPEYKPFAHELLGKGTFKPVEGKKEDPAHPAIYPTGELPKPG 383
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
+L D LYD IVR F+ V + F + L G+ V
Sbjct: 384 ELTKDEQNLYDLIVRRFLALFMEPAVRESMRVIINSNGHRFILSGARTLKEGWLKVYGKY 443
Query: 455 AMKNESI-PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
+E I P FK G+ + + +K ++KT PP + + +I ME GIGT A+ +
Sbjct: 444 VKFDEVILPQFKEGEPVKVIQIKREKKKTKPPARYSPAAVIKKMEDLGIGTKATRAQILE 503
Query: 514 NICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAY 558
+ QR Y + +++ T LG+ +V +K ++V + A+
Sbjct: 504 TLYQRGY--IEGKKKIKVTPLGMRVVEALEKNVPDIVSVELTRAF 546
>gi|68075963|ref|XP_679901.1| DNA topoisomerase III [Plasmodium berghei strain ANKA]
gi|56500744|emb|CAH93722.1| DNA topoisomerase III, putative [Plasmodium berghei]
Length = 674
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 169/313 (53%), Gaps = 5/313 (1%)
Query: 249 AVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSG 308
V TWSR +FD + ++ + K + ++ K +P LNT+++ ++ S
Sbjct: 306 VVDFTWSRLKLFDHLGVVLIYEDLLKNPLCRISNIFEKEVKKYRPFPLNTLQMTKLVSKY 365
Query: 309 LGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSN 368
+ M IAE+LY++GY+SYPRTET + ++ +L ++ + + + +G++ ++
Sbjct: 366 FHISSKECMNIAEKLYSKGYISYPRTETNYFVDSMNLRKIIHELKKNNIFGNYATKLAEK 425
Query: 369 GISKPRKGK-DVGDHPPITPTK-LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVA 426
KP KGK + HPPI P K + +D W++Y++I RHF+ D +
Sbjct: 426 NSCKPIKGKLNDKAHPPIHPVKNMNKANNVDFKEWKIYEFICRHFLAVCSDDAIGFDTKV 485
Query: 427 KFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPD 486
++ +E F + + + + + + ++ +P F+ D S+ + E T PP
Sbjct: 486 VANIGEEQFYCKGLKIKNKNYLEIYIYEKWNDKILPPFQINDEFYPYSLVVEEGITQPPK 545
Query: 487 YLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQK-- 544
YL+ES+L+SLM+K+GIGTDA++ HI NI +RNYV S +PT LGI L+ Y+K
Sbjct: 546 YLSESDLLSLMDKYGIGTDATMHEHIENIQKRNYVYKNSKNLFIPTKLGIALILSYKKFK 605
Query: 545 -IDRELVEPTMRS 556
I +L EP++R+
Sbjct: 606 DIGVDLTEPSLRA 618
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/190 (46%), Positives = 114/190 (60%), Gaps = 7/190 (3%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
+TSV GH+ F KY NW+ DP ELF K + L +KDC L+L
Sbjct: 56 VTSVTGHLTDQKFDDKYKNWNNTDPHELFDAKITIYIDKDKKPIENNLKKYSKDCNVLIL 115
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGE ICFEV+ A N + RA+FSA+T+KDIK A+ NL PN A+
Sbjct: 116 WLDCDREGE-ICFEVINACSVT---NKKLKIHRAQFSAVTEKDIKYAINNLKSPNKNLAQ 171
Query: 173 SVDARQELDLRIGCAFTRYQT-KFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
SVD R+E+DLR+G FTR+ T ++F K D +ISYGPCQ PTLGF V R+ +I+ F
Sbjct: 172 SVDVRREIDLRMGSIFTRFMTIRYF--KLVQNDTKIISYGPCQFPTLGFVVNRYLQIKNF 229
Query: 232 KPEPYWLLDL 241
E YW + +
Sbjct: 230 NNEYYWTIKM 239
>gi|315230416|ref|YP_004070852.1| DNA topoisomerase I [Thermococcus barophilus MP]
gi|315183444|gb|ADT83629.1| DNA topoisomerase I [Thermococcus barophilus MP]
Length = 719
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 212/453 (46%), Gaps = 17/453 (3%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
AK + ++ D D EGE I + A+++ ++ PK R +FSA+T +DI A +NL
Sbjct: 97 AKRADEFIVACDYDTEGEVIGYT---ALKYACGVD-PKKAKRMKFSALTKRDILKAWYNL 152
Query: 164 VKP--NIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
+P N A + AR LD G +R T + G ++S G Q PTL F
Sbjct: 153 -EPTINFGMADAGIARHILDWYWGVNLSRALTHAIKRASGKW--MILSTGRVQGPTLKFL 209
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEK-EKHVTV 280
VER +I FKP PYW++ +TL NG + T+ + I D+ + +K V
Sbjct: 210 VEREKEIANFKPTPYWVIKMTLEKNGKQYTATYEKERILDEEEAKRIVQEAKKGPAFVEK 269
Query: 281 VDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP 340
V+V+ ++ P L T L R A S G P + IA+RLY G SYPRT + + P
Sbjct: 270 VEVKQQKRNPPHPFDLGT--LQREAYSAFGYSPKKTLDIAQRLYEMGICSYPRTSSQKLP 327
Query: 341 ENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPT-KLATRTQLDG 398
+N + +++ P++ E+L KP +G KD HP I PT +L +L
Sbjct: 328 KNLNYKYIIQSLAKIPEYKPFAHELLGKPQLKPVEGQKDDPAHPAIYPTGELPKPGELTQ 387
Query: 399 DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKN 458
+ +YD IVR F+ V + + F + + G+ + +
Sbjct: 388 EEKNIYDLIVRRFLAAFADPAVREIMKVIINSNNHHFILSGARTVKEGWLKIYGKYVSFD 447
Query: 459 ESI-PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQ 517
E I P F+ G+ + + +K ++KT PP + + +I ME GIGT A+ + + Q
Sbjct: 448 EVILPKFREGEPVKVIQIKREKKKTKPPARYSPASVIKKMEDLGIGTKATRAQILETLYQ 507
Query: 518 RNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELV 550
R Y+ R+ P LG+ +V +K E+V
Sbjct: 508 RGYIEGKKKIRVTP--LGMKVVEALEKNVPEIV 538
>gi|15679619|ref|NP_276736.1| DNA topoisomerase I [Methanothermobacter thermautotrophicus str.
Delta H]
gi|14423958|sp|O27661.1|TOP1_METTH RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|2622750|gb|AAB86097.1| DNA topoisomerase I [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 718
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 126/423 (29%), Positives = 198/423 (46%), Gaps = 18/423 (4%)
Query: 115 DCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSV 174
D D EG I F A+++ + + R +FS +T ++I+ A N ++ + + S
Sbjct: 113 DYDIEGTLIGFN---ALKYGCGEEALRKTSRMKFSTLTREEIQRAYKNPIEVDYGQVDSG 169
Query: 175 DARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPE 234
AR LD G +R K + +S G QTPTL VER +IR FKP
Sbjct: 170 AARHILDFIFGVNISRSLMKSVKAATNRFIK--LSAGRVQTPTLAILVEREKEIRDFKPV 227
Query: 235 PYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCN-VFFKAVEKEKHVTVVDVQSSTKSKTKP 293
PYW++ L +A S RG IF + + + K + V V V+ + + P
Sbjct: 228 PYWIIRAELGEGIIAES---KRGKIFKRELVDSILEKCQGSDAEVKDVRVRDTIRKPPVP 284
Query: 294 QALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQE 353
L T L A G P IA+ LYT+GY SYPRT + + PE+ +L+
Sbjct: 285 FDLGT--LQSEAYRVFGFSPKKTQTIAQNLYTEGYTSYPRTSSQKLPESIGYEKILKNLA 342
Query: 354 SSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVRHFI 412
+P +G H+ + G KP +GK D HP I PT L ++L D ++YD IV FI
Sbjct: 343 KNPRFGVHIERL--RGPLKPHEGKKEDDAHPAIHPTGLLP-SELSKDEKKVYDLIVHRFI 399
Query: 413 GTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPI 472
D + + + +E F+ K + G+ ++ M++E P+ GD + +
Sbjct: 400 SVFGEDAILQTMKVELEIGEEEFSFSRKRVSKAGWMESYPYTKMEDEEFPEISGGDSLAV 459
Query: 473 QSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPT 532
+SV ER+T PP E+ LI +E+ G+GT ++ I + R Y+ G+++ +
Sbjct: 460 RSVSADERETKPPARYNEASLIRELERRGLGTKSTRADIIAKLYDRKYI---EGKKIRVS 516
Query: 533 SLG 535
LG
Sbjct: 517 PLG 519
>gi|212223461|ref|YP_002306697.1| topA [Thermococcus onnurineus NA1]
gi|212008418|gb|ACJ15800.1| topA [Thermococcus onnurineus NA1]
Length = 717
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 134/464 (28%), Positives = 216/464 (46%), Gaps = 15/464 (3%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
LA AK + V+ D D EGE I + A+++ ++ P R +FSA+T KD+ A
Sbjct: 93 LATLAKRADEFVVACDYDTEGEVIGYT---ALKYACGVD-PSKAKRMKFSALTKKDLLKA 148
Query: 160 MWNLVKP-NIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTL 218
+NL N A + AR LD G +R T + G ++S G Q PTL
Sbjct: 149 WYNLESTINFGMADAGIARHVLDWYWGVNLSRALTSAIKRASGKW--MVLSTGRVQGPTL 206
Query: 219 GFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEK-EKH 277
F V+R +I+ FKP PYW++ + L NG + + + I D++ + +K
Sbjct: 207 KFLVDREKEIQNFKPTPYWVIKMVLEKNGQQYTAVYEKERILDENEAKRIVEEAKKGPAF 266
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V VDV+ + P L T L R A S G P +++A++LY +G SYPRT +
Sbjct: 267 VEKVDVKQQNRHPPVPFDLGT--LQREAYSAFGYSPKKTLELAQKLYERGLTSYPRTSSQ 324
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPT-KLATRTQ 395
+ P+N + ++L+ P++ E+L KP +G KD HP I PT +L +
Sbjct: 325 KLPKNLNFRSILQNLAKLPEYKPFAHELLGKERLKPVEGKKDDPAHPAIYPTGELPKPGE 384
Query: 396 LDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSA 455
L D LYD IVR F+ V + F + + G+ V
Sbjct: 385 LTKDEANLYDLIVRRFLALFMEPAVREIMKVIINSNGHRFILSGARTIKEGWLKVYGKYV 444
Query: 456 MKNESI-PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINN 514
+E+I P FK G+ + + +K ++KT PP + + +I ME GIGT A+ +
Sbjct: 445 KFDEAILPAFKEGEPVKVLQIKREKKKTKPPARYSPAAVIKRMEDLGIGTKATRAQILET 504
Query: 515 ICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAY 558
+ R Y + +++ T LG+ +V ++ ++V + A+
Sbjct: 505 LYSRGY--IEGKKKIKVTPLGMRVVEALERNVPDIVSVELTRAF 546
>gi|389852119|ref|YP_006354353.1| DNA topoisomerase I [Pyrococcus sp. ST04]
gi|388249425|gb|AFK22278.1| DNA topoisomerase I [Pyrococcus sp. ST04]
Length = 691
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 141/517 (27%), Positives = 237/517 (45%), Gaps = 26/517 (5%)
Query: 44 LFGDLVLFKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAF 99
LF D + GH+ GL DF Y +D ++ + ++ K A +KL +
Sbjct: 37 LFRDGKRLIVAPAVGHLYGLAPKQDFYG-YPIFD-IEWVPVYIAEKGKEYAKDYIKLLSV 94
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
LA K+ V+ D D EGE I + A+++ ++ P R +FSA+T +D+ A
Sbjct: 95 LAKRVKE---FVVACDYDTEGEVIGYT---ALKYACGVD-PGIAKRMKFSALTKRDLIKA 147
Query: 160 MWNLVKP--NIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPT 217
+NL +P N A + AR LD G +R T + G ++S G Q PT
Sbjct: 148 WYNL-EPTINFGMANAGIARHILDWYWGVNLSRALTHAIKKASGRW--IVLSTGRVQGPT 204
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCN-VFFKAVEKEK 276
L F VER +I+ F P+PYW++ L NG + T+ + I+D++ + +A K+
Sbjct: 205 LKFLVEREREIQNFVPKPYWIIKLVFEKNGKKFTATYEKDKIWDENEAKRIVLEA--KKG 262
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTET 336
V V D+ + + P + L R A S G P + +A+ LY +G+ SYPRTE+
Sbjct: 263 PVRVADIDVKRQKRNPPVPFDLGTLQREAYSAFGFSPKKTLDLAQSLYEKGFSSYPRTES 322
Query: 337 TQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATR-T 394
+ P+N + +++ P++ + +L KP +G KD HP I PT R
Sbjct: 323 QKLPKNLNFRYIIQNIAKMPEYRPYAHLLLGMPELKPVEGKKDDPAHPAIYPTGEIPRPG 382
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM-TW 453
L D +LYD IVR F+ + F + + G+ V +
Sbjct: 383 DLTKDEAKLYDMIVRRFLALFMESAIRESVKVTIRAGPHRFILSGGRTVREGWLSVYGKY 442
Query: 454 SAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
+ ++P F G+ + + +K ++KT PP + + +I ME G+GT A+ +
Sbjct: 443 VKFEEVTLPTFLVGERVKVLQIKREKKKTKPPARYSPAAVIKKMEDLGLGTKATRAQILE 502
Query: 514 NICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELV 550
+ QR Y+ ++ P LG+ ++ +K E++
Sbjct: 503 TLYQRGYIEGKKSIKVTP--LGMKVIETLEKYVPEII 537
>gi|390960560|ref|YP_006424394.1| DNA topoisomerase, type IA [Thermococcus sp. CL1]
gi|390518868|gb|AFL94600.1| DNA topoisomerase, type IA [Thermococcus sp. CL1]
Length = 716
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 135/465 (29%), Positives = 220/465 (47%), Gaps = 17/465 (3%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
LA AK + V+ D D EGE I + A+++ ++ P R +FSA+T KD+ A
Sbjct: 93 LATLAKRADEFVVACDYDTEGEVIGYT---ALKYACGVD-PTRAKRMKFSALTKKDLLKA 148
Query: 160 MWNLVKP--NIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPT 217
+NL +P N A + AR LD G +R T + G ++S G Q PT
Sbjct: 149 WYNL-EPTINFGMADAGIARHVLDWYWGVNLSRALTSAIKRASGKW--QVLSTGRVQGPT 205
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEK-EK 276
L F VER +I F+P+PYW++ +TL N + + T+ R I+D+ + +K
Sbjct: 206 LKFLVEREREIANFQPKPYWVIKMTLEKNSKSYTATYERDKIWDEEEAKRIVQEAKKGPA 265
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTET 336
V V+V+ ++ P L T L R A S G P ++IA++LY + SYPRT +
Sbjct: 266 FVERVEVKQQKRNPPVPFDLGT--LQREAYSAFGYSPKKTLEIAQKLYERALCSYPRTSS 323
Query: 337 TQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPT-KLATRT 394
+ P+N + ++L+ P++ E+L +P +G K+ HP I PT +L
Sbjct: 324 QKLPKNLNFRSILQNLAKLPEYKPFAHELLGKDKLRPVEGKKEDPAHPAIYPTGELPKAG 383
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
+L D LYD IVR F+ V + + F + + G+ V
Sbjct: 384 ELTRDEANLYDLIVRRFLALFMEPAVREIARVIINSNNHRFILSGARTVKEGWLKVYGKY 443
Query: 455 AMKNESI-PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
+E I P FK G+ + + +K ++KT PP + + +I ME GIGT A+ +
Sbjct: 444 VKFDEVILPAFKEGEQVRVLQIKREKKKTKPPARYSPAAVIKKMEDLGIGTKATRAQILE 503
Query: 514 NICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAY 558
+ R Y + +++ T LG+ +V +K ++V + A+
Sbjct: 504 TLYSRGY--IEGKKKIKVTPLGMRVVEALEKNVPDIVSVELTRAF 546
>gi|221508293|gb|EEE33880.1| prokaryotic DNA topoisomerase, putative [Toxoplasma gondii VEG]
Length = 291
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 142/262 (54%), Gaps = 1/262 (0%)
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
TV DV+ + ++K +P L TVEL ++AS L M M IAE LY +G +SYPRTET
Sbjct: 8 ATVTDVRGTERTKQRPVPLCTVELHKMASRKLRMSSARCMSIAESLYQRGIISYPRTETE 67
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQL 396
+ DL++++R S WG + ++++ P G +D HPPI P KL R++L
Sbjct: 68 VFSPTMDLLSLIRVHIGSTAWGTYAQKLVDGDFLWPSDGARDDKAHPPIHPLKLMQRSEL 127
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM 456
+ + W+LY+++ RHF+ D + + +A E F +L + V +
Sbjct: 128 EEEEWKLYEFVTRHFLACCSEDAFGFETRVEIDIAGEGFYATGLTVLERRWLDVYPYEQW 187
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
+P F + + S+ M ER+T PP LTE++LI LM+K+GIGTDA++ HI I
Sbjct: 188 SGNRLPRFLVNERVMPSSILMSERQTEPPPLLTEADLIDLMDKNGIGTDATMHDHIRTIQ 247
Query: 517 QRNYVTVTSGRRLVPTSLGIVL 538
R+Y + VPT LG+ L
Sbjct: 248 DRHYCYKNENMQFVPTDLGVAL 269
>gi|333988062|ref|YP_004520669.1| DNA topoisomerase I [Methanobacterium sp. SWAN-1]
gi|333826206|gb|AEG18868.1| DNA topoisomerase I [Methanobacterium sp. SWAN-1]
Length = 787
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 127/465 (27%), Positives = 214/465 (46%), Gaps = 23/465 (4%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
+KD + V D D EG I + A+++ S K V R +FS +TD+DI A
Sbjct: 95 SKDADTFVHACDYDIEGTLIGYN---ALKYACGDESLKNVMRMKFSTLTDEDILKAYKKP 151
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQG---KYGDLDASLISYGPCQTPTLGF 220
++ + + S AR LD G +++ T +Y L A G QTPTL
Sbjct: 152 MELDFKQVDSGIARHVLDFFFGVNMSKHLTDSVMKATKRYIQLSA-----GRVQTPTLSI 206
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW--SRGHIFDKSTCNVFFKAVE-KEKH 277
V+R +I+ F P PYWL+ L++ GV +T +G I +K + VE K K
Sbjct: 207 LVDREKEIKEFIPVPYWLIKADLDVTGVKEGITADHKKGKILEKKDADAIL--VECKGKD 264
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
+ +V +KT P + L A G P QIA+ LYT+GY SYPRT +
Sbjct: 265 AVITEVNLRKTTKTPPFPFDLGSLQSEAYGVFGFSPRKTQQIAQNLYTEGYTSYPRTSSQ 324
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQL 396
+ P++ +L++ S +G+HV ++ KP +GK + HP I PT + + +L
Sbjct: 325 KLPKSIGYDKILKKLSYSSAFGNHVAQL--KKPYKPNEGKKTDEAHPAIHPTGVLPK-EL 381
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM 456
D +LY+ IV FI + ++ E F K + G+ G + +
Sbjct: 382 STDYRKLYELIVYRFISVFGENATLETMKTTLTIGKEEFNFSRKRMSKMGWMGHYPFRKI 441
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
+ + P G+ + ++ V+ +++T PP ++ LI +EK G+GT ++ I+ +
Sbjct: 442 EEDYFPTMNKGETLNVKEVRAEDKETKPPARYNQASLIRELEKRGLGTKSTRANIIDILF 501
Query: 517 QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
R YV G+++ LG L+ +K +++ + + +
Sbjct: 502 SRKYV---EGKKITVNKLGEQLIDTLRKYSKKITSEELTREFETK 543
>gi|255514071|gb|EET90334.1| DNA topoisomerase I [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 727
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 125/449 (27%), Positives = 200/449 (44%), Gaps = 25/449 (5%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
A++C + D D EG I +++ + R +FS T KD+ + +L
Sbjct: 97 AQECSTFINACDYDIEGTVIGTNIIKELSGLQAEAIGSVSKRMKFSTTTPKDLLDSFGSL 156
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQ--GKYGDLDASLISYGPCQTPTLGFC 221
+ P+I + +AR LD G F+R T G+Y L S G Q P LG
Sbjct: 157 LPPDINNFYAGEARHMLDWLWGINFSRALTSALSSSGQYKQL-----SIGRVQGPALGLL 211
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW----SRGHIFDKSTCNVFFKAVEKEKH 277
+R +I +FKPEPYW N +A S + SRG+IF K F A +
Sbjct: 212 AKREKEIASFKPEPYW--------NVLAYSGEFEFINSRGNIFAKQEAESAFSAANSGRD 263
Query: 278 VTVVDVQSSTKSKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTET 336
VV +S + +P + L AS G P + +A+ LY + ++SYPRT +
Sbjct: 264 NAVVSEATSAEQLRRPYPPFDLTSLQLEASRVFGFDPSATLAMAQSLYERSFISYPRTSS 323
Query: 337 TQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQ 395
+ P L ++ +P + E+ S G P +G K+ HP I PT + T
Sbjct: 324 QKLPRTLGLPRIIADLGKNPAYSTIAAEIASKGRFTPAEGPKEDEAHPAIFPTGV-TPKG 382
Query: 396 LDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSA 455
+ G +LYD I R F+ + S+ E F + + +PG+ ++
Sbjct: 383 ITGSEEKLYDLIARRFLSCFGEYAKVNNFSLEISIGGETFEGKGSKVTYPGWLDYYKYAK 442
Query: 456 MKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNI 515
+K +P+ + G + I +KM E +T PP T++ LIS +EKH +GT A+ I+ +
Sbjct: 443 IKERDLPNLEKGQRVEITDIKMPELQTAPPKRFTKAGLISELEKHNLGTKATRAAIIDTL 502
Query: 516 CQRNYVTVTSGRRLVPTSLGIVLVHGYQK 544
+RNY+ G + T G+ + +K
Sbjct: 503 FKRNYI---EGSSIRVTEFGMTVYDALEK 528
>gi|308813033|ref|XP_003083823.1| DNA topoisomerase III alpha (ISS) [Ostreococcus tauri]
gi|116055705|emb|CAL57790.1| DNA topoisomerase III alpha (ISS) [Ostreococcus tauri]
Length = 382
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 112/171 (65%), Gaps = 2/171 (1%)
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
A+ D + AM +L + N EA +VDARQELDL++G AFTR+QT++F KY LDA ++S
Sbjct: 23 ALKRADRENAMKSLGRANRNEALAVDARQELDLKMGVAFTRFQTQYFLNKYDRLDARVVS 82
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL--NLNGVAVSVTWSRGHIFDKSTCNV 267
YGPCQTPTLGFCV+RH +I PEPYW+L+ G V+ W+R +FD+
Sbjct: 83 YGPCQTPTLGFCVQRHLEIVRHVPEPYWVLEALFADADRGEEVAPKWARSRLFDEEAARA 142
Query: 268 FFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQ 318
F + V K VV V+S + + +P LNTVE+++ AS+GLGMG H AMQ
Sbjct: 143 FLQLVNDAKTFDVVSVESKAEKRPRPSGLNTVEMLKAASAGLGMGAHRAMQ 193
>gi|16769908|gb|AAL29173.1| SD10251p [Drosophila melanogaster]
Length = 444
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 83/125 (66%), Positives = 99/125 (79%), Gaps = 1/125 (0%)
Query: 433 EMFTMEAKYLLHPGFTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTES 491
E F+ A L+ GFT VMTWSA K+E P F G + I V+++E +T PPDYLTES
Sbjct: 2 ETFSCTASVLIDAGFTKVMTWSAFGKDEPQPPFVQGTQVAINDVRLIESQTGPPDYLTES 61
Query: 492 ELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVE 551
ELI+LME+HGIGTDASIPVHINNICQRNYV + +GR+L+PT+LGIVLVHGYQKID ELV
Sbjct: 62 ELITLMEEHGIGTDASIPVHINNICQRNYVHIENGRKLMPTTLGIVLVHGYQKIDPELVL 121
Query: 552 PTMRS 556
PTMR+
Sbjct: 122 PTMRT 126
>gi|341581825|ref|YP_004762317.1| DNA topoisomerase I [Thermococcus sp. 4557]
gi|340809483|gb|AEK72640.1| DNA topoisomerase I [Thermococcus sp. 4557]
Length = 719
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 136/465 (29%), Positives = 215/465 (46%), Gaps = 17/465 (3%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
LA AK + V+ D D EGE I + A+++ I+ P R +FSA+T KD+ A
Sbjct: 93 LATLAKRADEFVVACDYDTEGEVIGYT---ALKYACGID-PSRAKRMKFSALTKKDLLKA 148
Query: 160 MWNLVKP--NIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPT 217
+NL +P N A + AR LD G +R T + G ++S G Q PT
Sbjct: 149 WYNL-EPTINFGMADAGIARHVLDWYWGVNLSRALTSAIKRASGKW--QVLSTGRVQGPT 205
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEK-EK 276
L F V+R +I+ FKP PYW++ + L NG + + + I D+ + +K
Sbjct: 206 LKFLVDREKEIQNFKPTPYWVIKMLLEKNGEQYTAVYEKERILDEDEAKRIVEEAKKGPA 265
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTET 336
V V+V+ ++ P L T L R A S G P +++A++LY +G SYPRT +
Sbjct: 266 FVEKVEVKQQKRNPPVPFDLGT--LQREAYSAFGYSPKKTLELAQKLYERGLTSYPRTSS 323
Query: 337 TQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPT-KLATRT 394
+ P+N + +L+ P++ E+L KP +G K+ HP I PT +L
Sbjct: 324 QKLPKNLNFRPILQNLAKLPEYKPFAHELLGKERLKPVEGKKEDPAHPAIYPTGELPKPG 383
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
L D LYD IVR F+ V + F + + G+ V
Sbjct: 384 DLTKDEQNLYDLIVRRFLALFMEPAVREIMKVVINSNSHRFILGGARTVKEGWLKVYGKY 443
Query: 455 AMKNESI-PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
+E I P FK G+ + + +K ++KT PP + + +I ME GIGT A+ +
Sbjct: 444 VKFDEVILPAFKEGEPVKVIQIKREKKKTKPPARYSPAAVIKRMEDLGIGTKATRAQILE 503
Query: 514 NICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAY 558
+ R Y + R++ T LG+ +V +K ++V + A+
Sbjct: 504 TLYSRGY--IEGKRKIKVTPLGMRVVEALEKNVPDIVSVELTKAF 546
>gi|304313985|ref|YP_003849132.1| DNA topoisomerase I [Methanothermobacter marburgensis str. Marburg]
gi|302587444|gb|ADL57819.1| DNA topoisomerase I [Methanothermobacter marburgensis str. Marburg]
Length = 711
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 127/423 (30%), Positives = 198/423 (46%), Gaps = 18/423 (4%)
Query: 115 DCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSV 174
D D EG I F A+R+ ++ + R +FS +T ++I++A ++ + + S
Sbjct: 106 DYDIEGTLIGFN---AIRYGCGEDALQKTVRMKFSTLTREEIQSAYEKPIELDCGQVDSG 162
Query: 175 DARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPE 234
AR LD G +R K + +S G QTPTL VER +IR F+P
Sbjct: 163 AARHILDFIFGVNISRSLMKSVKEATNRFIK--LSAGRVQTPTLAILVEREKEIREFEPV 220
Query: 235 PYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCN-VFFKAVEKEKHVTVVDVQSSTKSKTKP 293
PYW++ L VA S RG IF + + V + + V V V+ + + P
Sbjct: 221 PYWIIQAELESGIVAES---RRGKIFQRPLVDEVLERCSGSDASVRGVKVRDTVRKPPVP 277
Query: 294 QALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQE 353
L + L A G P IA+ LYT+GY SYPRT + + PE+ +L +
Sbjct: 278 FDLGS--LQSEAYRVFGFSPKKTQTIAQNLYTEGYTSYPRTSSQKLPESIGYRKILDRLS 335
Query: 354 SSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVRHFI 412
P +G H+ E LS + KP +GK V D HP I PT L + L D ++Y+ IV FI
Sbjct: 336 EDPRFGAHI-EGLSEPL-KPHEGKKVDDAHPAIHPTGLLP-SDLSSDERKIYELIVHRFI 392
Query: 413 GTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPI 472
D V + E F+ K + G+ ++ +++E PD GD++ +
Sbjct: 393 SVFGEDAVLQTMRVDLEIGGEEFSFSRKRVSKRGWMDSYPYTRIEDEVFPDISEGDVMGV 452
Query: 473 QSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPT 532
V +E++T PP E+ LI +EK G+GT ++ I + R Y+ G+++ +
Sbjct: 453 VGVSTLEKETKPPARYNEASLIRELEKRGLGTKSTRADIIAKLYDRKYI---EGKKIRVS 509
Query: 533 SLG 535
LG
Sbjct: 510 PLG 512
>gi|14521628|ref|NP_127104.1| DNA topoisomerase I [Pyrococcus abyssi GE5]
gi|14423980|sp|Q9UYS8.1|TOP1_PYRAB RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|5458847|emb|CAB50334.1| topA DNA topoisomerase I [Pyrococcus abyssi GE5]
gi|380742240|tpe|CCE70874.1| TPA: DNA topoisomerase I [Pyrococcus abyssi GE5]
Length = 685
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 144/523 (27%), Positives = 246/523 (47%), Gaps = 38/523 (7%)
Query: 44 LFGDLVLFKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAF 99
+F D + S GH+ GL DF Y +D ++ + ++ K A +K +
Sbjct: 37 VFRDGKKLIVASAVGHLYGLAPKQDFFG-YPIFD-IEWVPVYIAEKNKDYAKDYIKALSV 94
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
LA K EF+V D D EGE I + A+++ ++ P R +FSA+T +D+ A
Sbjct: 95 LAKRVK--EFIVA-CDYDTEGEVIGYT---ALKYACGVD-PSRAKRMKFSALTKRDLLNA 147
Query: 160 MWNLVKP--NIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPT 217
W ++P N A + AR LD G +R T + G ++S G Q PT
Sbjct: 148 -WRNLEPTINFGMANAGIARHVLDWYWGVNLSRALTHAIKRASGKW--VVLSTGRVQGPT 204
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEK- 276
L F VER +I++F P+PYW++ L + NG + + + I+ + V+K K
Sbjct: 205 LKFLVEREREIQSFVPKPYWVIKLVIEKNGQKLVANYEKDKIWSEEEAKKIVTEVKKSKA 264
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTET 336
V+ ++V+ ++ P L T L R A S G P + IA+ LY +G+ SYPRTE+
Sbjct: 265 RVSNIEVKRQKRNPPVPFDLGT--LQREAYSAFGFSPKKTLDIAQSLYEKGFTSYPRTES 322
Query: 337 TQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPT-KLATRT 394
+ P+N + +++ P + + +L KP +G K+ HP I PT ++
Sbjct: 323 QKLPKNLNFRLIIQNISRMPQYRPYAHLLLGMPELKPVEGKKEDPAHPAIYPTGEIPGPG 382
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
L D +LYD IVR F+ ++ + + SV + K++L T W
Sbjct: 383 DLSKDEEKLYDMIVRRFLA------LFMEPAVRESVKVTILAGPHKFMLSGARTVKQGWL 436
Query: 455 AMKNE-------SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDAS 507
++ + ++P+F G+ + + V+ ++KT PP + + +I ME GIGT A+
Sbjct: 437 SVYGKYIKFDEVTLPEFFIGERVRVLQVRREKKKTKPPARYSPAAVIKKMEDLGIGTKAT 496
Query: 508 IPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELV 550
+ + QR Y+ ++ P LG+ ++ +K E++
Sbjct: 497 RAQILETLYQRGYIEGKKSIKVTP--LGMKVIETLEKYVPEII 537
>gi|222445728|ref|ZP_03608243.1| hypothetical protein METSMIALI_01370 [Methanobrevibacter smithii
DSM 2375]
gi|261349724|ref|ZP_05975141.1| DNA topoisomerase [Methanobrevibacter smithii DSM 2374]
gi|222435293|gb|EEE42458.1| DNA topoisomerase I [Methanobrevibacter smithii DSM 2375]
gi|288861679|gb|EFC93977.1| DNA topoisomerase [Methanobrevibacter smithii DSM 2374]
Length = 716
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 128/434 (29%), Positives = 193/434 (44%), Gaps = 18/434 (4%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
AKD + + D D EG I + A+++ ++ K R +FS +T KDI A N
Sbjct: 97 AKDADSYIHACDYDIEGTLIGYH---ALKYGCGEDALKKSSRMKFSTLTKKDIVEAYENR 153
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVE 223
+ + + S AR LD G ++ K +S G QTPTL V+
Sbjct: 154 IPIDRHQVDSGVARHILDFYFGVNISKALMKSVSAAKKRF--LKLSAGRVQTPTLSILVD 211
Query: 224 RHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV 283
R +I+ F PEPYWL+ L+ A V G IFDK+ F E VD
Sbjct: 212 REKEIKKFVPEPYWLIKALLDGEIEADHVD---GKIFDKTRAEEIFSNCENSD--AAVDK 266
Query: 284 QSSTKSKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPEN 342
+ S TKP N L A + G P IA+ LYT GY SYPRT + + PE+
Sbjct: 267 IKYSNSTTKPPVPFNLGGLQSEAYNVFGFSPKKTQTIAQSLYTAGYTSYPRTSSQKLPES 326
Query: 343 FDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAW 401
D ++ Q + ++ H+ + + KP +GK + HP I PT + +LD D
Sbjct: 327 LDFKSIFLQLSKNSEFRTHISALPAK--LKPNEGKKEDAAHPAIHPTGILP-DKLDKDEL 383
Query: 402 RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI 461
++Y+ IV FI + + E F + + H G+ + + NE
Sbjct: 384 KIYELIVYRFISVFFEAATFETMSTTLDIGGEKFKFRRRRVTHKGWLEHYPFKKIDNEEF 443
Query: 462 PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
PD K GD I ++ + E++T PP ++ LI +EK +GT A+ I+ + R Y+
Sbjct: 444 PDVKEGDSIIVKEIVSEEKETKPPARYNQASLIKELEKRELGTKATRADIIDKLYDRKYI 503
Query: 522 TVTSGRRLVPTSLG 535
T G ++ LG
Sbjct: 504 T---GNKIEVNQLG 514
>gi|320582566|gb|EFW96783.1| DNA topoisomerase [Ogataea parapolymorpha DL-1]
Length = 311
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 153/295 (51%), Gaps = 17/295 (5%)
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTET 336
TVV + + S P L TVE+ + + + IAE+LY G++SYPRTET
Sbjct: 5 EATVVSLDTKPTSNWAPLPLTTVEMQKDCARFFKFSAKQTLTIAEKLYNSGFISYPRTET 64
Query: 337 TQYPENFDLVAVLRQQESSPDWGDHVREVLSNG--ISKPRKGK-DVGDHPPITPTKLATR 393
++P+N DL +++ Q S WG + + +L++G +PR+G D HPPI P +
Sbjct: 65 DRFPKNMDLKKLIQSQTQSQTWGQYAQMLLNDGSKFRQPREGSHDDKAHPPIHPVIFTSG 124
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM-- 451
L+ + +LY+Y+VR F+G D + E FT + + V
Sbjct: 125 ESLNANERKLYEYVVRRFLGCCSKDATGLRTSLTLKWGTETFTTSGLIVKELNYLEVYVY 184
Query: 452 -TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPV 510
+W + K++ IP+ + GD + + S ++ KT+PP LTE ELI+LM+ +GIGTDA+I
Sbjct: 185 NSWESSKSK-IPEVQAGDKVTLASAQLSTGKTSPPSPLTEPELIALMDINGIGTDATIAE 243
Query: 511 HINNICQRNYVTVTSGRR-------LVPTSLGIVLVHGYQKI---DRELVEPTMR 555
HI I +R+YVT R L+PT LG L G+ +I L +P +R
Sbjct: 244 HIEKIIERSYVTKEDQGRGKSKSKVLIPTELGYALAEGFSQIGFDSMSLTKPFLR 298
>gi|148642777|ref|YP_001273290.1| DNA topoisomerase I, TopA [Methanobrevibacter smithii ATCC 35061]
gi|148551794|gb|ABQ86922.1| DNA topoisomerase I, TopA [Methanobrevibacter smithii ATCC 35061]
Length = 716
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 127/434 (29%), Positives = 193/434 (44%), Gaps = 18/434 (4%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
AKD + + D D EG I + A+++ ++ K R +FS +T KDI A N
Sbjct: 97 AKDADSYIHACDYDIEGTLIGYH---ALKYGCGDDALKKSSRMKFSTLTKKDIVEAYENR 153
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVE 223
+ + + S AR LD G ++ K +S G QTPTL V+
Sbjct: 154 IPIDRHQVDSGVARHILDFYFGVNISKALMKSVSAAKKRF--LKLSAGRVQTPTLSILVD 211
Query: 224 RHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV 283
R +I+ F P+PYWL+ L+ A V G IFDK+ F E VD
Sbjct: 212 REKEIKKFVPKPYWLIKALLDGEIEADHVD---GKIFDKTRAEEIFSNCENSD--AAVDK 266
Query: 284 QSSTKSKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPEN 342
+ S TKP N L A + G P IA+ LYT GY SYPRT + + PE+
Sbjct: 267 IKYSNSTTKPPVPFNLGGLQSEAYNVFGFSPKKTQTIAQSLYTAGYTSYPRTSSQKLPES 326
Query: 343 FDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAW 401
D ++ Q + ++ H+ + + KP +GK + HP I PT + +LD D
Sbjct: 327 LDFKSIFLQLSKNSEFRTHISALPAK--LKPNEGKKEDAAHPAIHPTGILP-DKLDKDEL 383
Query: 402 RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI 461
++Y+ IV FI + + E F + + H G+ + + NE
Sbjct: 384 KIYELIVYRFISVFFEAATFETMSTTLDIGGEKFKFRRRRVTHKGWLEHYPFKKIDNEEF 443
Query: 462 PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
PD K GD I ++ + E++T PP ++ LI +EK +GT A+ I+ + R Y+
Sbjct: 444 PDVKEGDSIIVKEIVSEEKETKPPARYNQASLIKELEKRELGTKATRADIIDKLYDRKYI 503
Query: 522 TVTSGRRLVPTSLG 535
T G ++ LG
Sbjct: 504 T---GNKIEVNQLG 514
>gi|14590513|ref|NP_142581.1| DNA topoisomerase I [Pyrococcus horikoshii OT3]
gi|14423960|sp|O58356.1|TOP1_PYRHO RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|3257028|dbj|BAA29711.1| 686aa long hypothetical DNA topoisomerase I [Pyrococcus horikoshii
OT3]
Length = 686
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 141/512 (27%), Positives = 236/512 (46%), Gaps = 34/512 (6%)
Query: 53 MTSVCGHIMGLDFTSK---YNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEF 109
+ S GH+ GL Y +D ++ + ++ K A +K + LA + EF
Sbjct: 46 VASAVGHLYGLAPKRDVFGYPIFD-IEWVPVYIAEKGKEYAREYIKALSVLAKRVR--EF 102
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKP--N 167
+V D D EGE I + A+++ ++ P+ R +FSA+T +D+ A W ++P N
Sbjct: 103 IVA-CDYDTEGEVIGYT---ALKYACGVD-PRVAKRMKFSALTKRDLLNA-WRNLEPTIN 156
Query: 168 IFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDK 227
A + AR LD G +R T + G ++S G Q PTL F VER +
Sbjct: 157 FGMANAGIARHILDWYWGVNLSRALTHAIKKASGKW--VVLSTGRVQGPTLKFLVERERE 214
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
I++F P PYW++ L NG + + + I+++ V+K V +V+
Sbjct: 215 IQSFVPRPYWVIKLIFEKNGQKFTANYEKDKIWEEEEGKRIVLEVKKSIP-RVSNVEIKR 273
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
+ +T P + L R A S G P + IA+ LY +G+ SYPRTE+ + P N +
Sbjct: 274 QKRTPPHPFDLGTLQREAYSAFGFSPKKTLDIAQSLYEKGFSSYPRTESQKLPRNINFRM 333
Query: 348 VLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATR-TQLDGDAWRLYD 405
+++ P + + +L KP +G K+ HP I PT R L D +LYD
Sbjct: 334 IIQNLAKMPQYRPYAHILLGLPELKPVEGKKEDPAHPAIYPTGEIPRPGDLTKDEEKLYD 393
Query: 406 YIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE------ 459
IVR F+ V+ + + SV + K+ L G T W ++ +
Sbjct: 394 MIVRRFLA------VFMEPAIRESVKVTIRAGPHKFFLSGGRTVKKGWLSVYGKYVKFEE 447
Query: 460 -SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQR 518
++P+F G+ I + VK ++KT PP + + +I ME G+GT A+ + + QR
Sbjct: 448 VTLPEFFIGERIKVIQVKREKKKTKPPARYSPAAVIKKMEDLGLGTKATRAQILETLYQR 507
Query: 519 NYVTVTSGRRLVPTSLGIVLVHGYQKIDRELV 550
Y+ ++ P LG+ ++ +K E++
Sbjct: 508 GYIEGKKSIKVTP--LGMKVIETLEKYVPEII 537
>gi|340505685|gb|EGR31996.1| hypothetical protein IMG5_098220 [Ichthyophthirius multifiliis]
Length = 482
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 154/284 (54%), Gaps = 18/284 (6%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTE--KREATPKL 94
++++ L+ V TSV GHI+ F K+ NW +V+P L TE + A K
Sbjct: 41 IYKFNYQLYQQPVNMLFTSVTGHIIQTKFDDKFKNWTQVNPQILLDPNTEILRFIAEDKK 100
Query: 95 KLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDK 154
K+ L ++D + L+LWLDCD+EGE I +EV++ + +IN + RA+FS++ +
Sbjct: 101 KIEENLKIISRDADTLILWLDCDREGEAIAYEVIDICQ---SINRNLQIKRAQFSSLDYQ 157
Query: 155 DIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDAS--LISYGP 212
+I A+ NL +P +V AR E+DLRIG AFTR+QT Q K+ L S +ISYGP
Sbjct: 158 NINRAINNLREPKKELNDAVQARIEIDLRIGAAFTRFQTINLQNKFQSLKQSKEIISYGP 217
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN----GVAVSVTWSRGHIFDKSTCNVF 268
CQ PTLGF VER+++I+ FK E +W + + N + W R ++D+ ++F
Sbjct: 218 CQFPTLGFVVERYNQIQLFKEEKFWYIQGSFTWNEGQQQYICDLKWERVRLYDQEVASLF 277
Query: 269 FKAVEKE-------KHVTVVDVQSSTKSKTKPQALNTVELMRVA 305
+ + K + V ++ TK+K L ++ +VA
Sbjct: 278 YIQCTHDERNQFNPKGIVVKKIEKETKNKNLIHQLQLIQQNKVA 321
>gi|20095040|ref|NP_614887.1| topoisomerase IA [Methanopyrus kandleri AV19]
gi|19888310|gb|AAM02817.1| Topoisomerase IA [Methanopyrus kandleri AV19]
Length = 587
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 133/445 (29%), Positives = 207/445 (46%), Gaps = 34/445 (7%)
Query: 107 CEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKP 166
+ +++ D D EGE I +EV+ ++ Q ++ P+ R RFSA T +D+ A+ ++
Sbjct: 105 ADRVIVATDNDAEGELIGWEVLVWLKRQGGLDDPECARRMRFSAYTREDVLRALEGALRG 164
Query: 167 NIFE---ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVE 223
+ A S AR D G TR + + ++S G QTPTL VE
Sbjct: 165 ERIDPSLAYSALARTIADWLYGIPLTR--------RLSLCNDDIVSVGRVQTPTLKLVVE 216
Query: 224 RHDKIRTF--KPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV 281
R + R K YW+L + + + G + + + + VV
Sbjct: 217 RERERRKAQKKRRYYWILQAETPIGELRTEEKFKDGRRARELASEI--------ESIRVV 268
Query: 282 DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPE 341
+V+ +S P N L R A L + P + +A+RLY +G ++YPRT T +YP
Sbjct: 269 EVRRERRSVRPPTPFNLTTLQRAAGKILRISPKRTLDLAQRLYEEGMITYPRTATNRYPS 328
Query: 342 NFDLVAVLRQ-QESSPDWGDHVREVLSNG-ISKPRKGKDV-GDHPPITPTKLATRTQLDG 398
FD +LR+ + + P D +R+ G S+P GK+ G HPPITPT R + G
Sbjct: 329 TFDHEELLRKLRNAHP---DALRDFQRTGRRSEPVSGKEYDGAHPPITPT--GRRKYIRG 383
Query: 399 D-AWRLYDYIVRHFIGTLCGD--LVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSA 455
AWRLYD IVR ++ TL D +V + VA+ F ME + G+ V W
Sbjct: 384 KLAWRLYDLIVRRYLATLSEDALVVKWRIVAEHPGTGTRFVMEGTEVERDGWYSVYPWEK 443
Query: 456 MKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNI 515
+ ++PD GD +P RK P Y ++S L++ M+K G+GT+++ + +
Sbjct: 444 PRESTMPDVSEGDELPANVNASRRRKPLPRRY-SQSRLVAKMKKLGLGTESTRAEIVKKL 502
Query: 516 CQRNYVTVTSGRRLVPTSLGIVLVH 540
R YV +G + PT G LV
Sbjct: 503 FDRGYVK-RAGSGVAPTKRGERLVE 526
>gi|325958291|ref|YP_004289757.1| DNA topoisomerase i [Methanobacterium sp. AL-21]
gi|325329723|gb|ADZ08785.1| DNA topoisomerase I [Methanobacterium sp. AL-21]
Length = 775
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/465 (26%), Positives = 217/465 (46%), Gaps = 23/465 (4%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
+K+ + V D D EG I + A+++ NS R +FS +T++DI AA
Sbjct: 95 SKNADRFVHACDYDIEGTLIGYN---ALKYACGENSLDNAVRMKFSTLTNEDITAAYEKP 151
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQ---GKYGDLDASLISYGPCQTPTLGF 220
+ + + S AR LD G ++ T+ +Y L A G QTPTL
Sbjct: 152 LNIDFNQVDSGIARHVLDFLFGVNISKSLTESVMETTKRYIQLSA-----GRVQTPTLAI 206
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSR--GHIFDKSTCNVFFKAVE-KEKH 277
VER +I+ F PEPYW++ L++ G+ VT G IFDK+ + F + K
Sbjct: 207 LVEREKEIQKFIPEPYWMIKADLDVPGIDELVTADHKAGKIFDKNVADEIFADCDGKNAV 266
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V +DV+ + K+ P L + L A + G P QIA+ LYT+G+ SYPRT +
Sbjct: 267 VDGIDVRETVKAPPFPFDLGS--LQSEAYAVFGFSPKKTQQIAQNLYTEGFTSYPRTSSQ 324
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDV-GDHPPITPTKLATRTQL 396
+ P++ + +L++ S + + + ++ KP +GK HP I PT + + +L
Sbjct: 325 KLPKSIGVDKILKKLSYSGSFRNQIAKL--KKPYKPNEGKKTDAAHPAIHPTGVIPK-EL 381
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM 456
D +LY+ I FI + + + D+ F+ K + G+ + +
Sbjct: 382 STDDRKLYELITYRFISVFGENGLLESMKTSLKIGDQDFSFSRKRMAKLGWMELTPFKKA 441
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
+N+S P D + +++V+ E++T PP ++ LI +EK G+GT ++ I+ +
Sbjct: 442 ENDSFPTISKDDELLVEAVRSEEKETKPPARYNQASLIRELEKRGLGTKSTRANIISILY 501
Query: 517 QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
R +V G+++ LG L+ ++ ++ M + +
Sbjct: 502 DRKFV---EGKKIKVNELGEHLIDTLKEYSNKITSEEMTREFETR 543
>gi|193788457|dbj|BAG53351.1| unnamed protein product [Homo sapiens]
Length = 275
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 91/112 (81%), Gaps = 1/112 (0%)
Query: 451 MTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
M W ++ ES+P + GD P+ VKM+E++T PPDYLTE+ELI+LMEKHGIGTDASIP
Sbjct: 1 MPWQSVPLEESLPTCQRGDAFPVGEVKMLEKQTNPPDYLTEAELITLMEKHGIGTDASIP 60
Query: 510 VHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
VHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 61 VHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 112
>gi|67971930|dbj|BAE02307.1| unnamed protein product [Macaca fascicularis]
Length = 407
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 92/112 (82%), Gaps = 1/112 (0%)
Query: 451 MTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
M W ++ ES+P + GD P+ VKM+E++T+PPDYLTE+ELI+LMEKHGIGTDASIP
Sbjct: 1 MPWQSVPLEESLPTCQRGDTFPVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIP 60
Query: 510 VHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
VHINNICQRNYV+V SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 61 VHINNICQRNYVSVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 112
>gi|408402639|ref|YP_006860622.1| DNA topoisomerase IA [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408363235|gb|AFU56965.1| DNA topoisomerase IA [Candidatus Nitrososphaera gargensis Ga9.2]
Length = 685
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 128/498 (25%), Positives = 218/498 (43%), Gaps = 27/498 (5%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR-EATPKLKLPAFLANEAKDCEF 109
+K+ S GH+ GL ++K N L+L P +K A +K+ ++ +K+
Sbjct: 43 YKVCSALGHLYGLADSTK--NRSVYPVLDLEWAPVDKNPRAARAIKV---ISELSKNASA 97
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
V D D+EGE I +++ + RA+FS +TD++I+ + +L +P+
Sbjct: 98 FVHACDYDQEGEVIGHNILQYACG----GKYEKALRAKFSTLTDEEIRESFASLERPSGG 153
Query: 170 EARSVDARQELDLRIGCAFTR---YQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHD 226
A + +R LD G +R K Y +L S G Q PTL F V+R
Sbjct: 154 LAEAGRSRHMLDFIYGVNLSRALAQSLKMASNGYCNL-----SIGRVQGPTLAFAVDREL 208
Query: 227 KIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSS 286
+IR P+PYW + N S + + + + A + TV DV S
Sbjct: 209 EIRLHVPDPYWTIAAQFEKNNQTFSAQYEKPKVGTLAEAKSIVSACIG-RDGTVSDVVDS 267
Query: 287 TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLV 346
P N +L R A +GP + + IAE+LY Q +SYPRT + + P +
Sbjct: 268 KAVLGPPTPFNIGDLQREAYRLFKLGPGYTLAIAEKLYLQALISYPRTSSQKLPPSIGYG 327
Query: 347 AVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKLATRTQLDGDAWRLYD 405
++ +G +LS G P +G+ HP I PT +A + +L +++YD
Sbjct: 328 KIISSLSRIGGYGQLTSMLLSKGRLVPNEGRMTDPAHPAIYPTGVAPQQKLSSLEFKVYD 387
Query: 406 YIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSA----MKNESI 461
+V+ F+ T + V F + + P + G M + ++ +
Sbjct: 388 LVVKRFLATFGDPAISRHTDVSIDVNSHTFKAQGR---SPVYEGWMVFYKPHVRLEQHEL 444
Query: 462 PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
P+ + GDL+ + M E+ T PP ++ L++ ME+ IGT A+ I + +RNY+
Sbjct: 445 PELRKGDLVKNLGIDMEEKFTQPPYRYNQASLLAKMEQEQIGTKATRADIIATLFKRNYI 504
Query: 522 TVTSGRRLVPTSLGIVLV 539
+ + T LG ++
Sbjct: 505 ASSVRGGIEVTDLGFAVI 522
>gi|300521518|gb|ADK25970.1| topoisomerase IA [Candidatus Nitrososphaera gargensis]
Length = 685
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 128/498 (25%), Positives = 218/498 (43%), Gaps = 27/498 (5%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKR-EATPKLKLPAFLANEAKDCEF 109
+K+ S GH+ GL ++K N L+L P +K A +K+ ++ +K+
Sbjct: 43 YKVCSALGHLYGLADSTK--NRSVYPVLDLEWAPVDKNPRAARAIKV---ISELSKNASA 97
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
V D D+EGE I +++ + RA+FS +TD++I+ + +L +P+
Sbjct: 98 FVHACDYDQEGEVIGHNILQYACG----GKYEKALRAKFSTLTDEEIRESFASLERPSGG 153
Query: 170 EARSVDARQELDLRIGCAFTR---YQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHD 226
A + +R LD G +R K Y +L S G Q PTL F V+R
Sbjct: 154 LAEAGRSRHMLDFIYGVNLSRALAQSLKMASNGYCNL-----SIGRVQGPTLAFAVDREL 208
Query: 227 KIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSS 286
+IR P+PYW + N S + + + + A + TV DV S
Sbjct: 209 EIRLHVPDPYWTIAAQFEKNNQTFSAQYEKPKVGTLAEAKSIVSACIG-RDGTVSDVVDS 267
Query: 287 TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLV 346
P N +L R A +GP + + IAE+LY Q +SYPRT + + P +
Sbjct: 268 KAVLGPPTPFNIGDLQREAYRLFKLGPGYTLAIAEKLYLQALISYPRTSSQKLPPSIGYG 327
Query: 347 AVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG-DHPPITPTKLATRTQLDGDAWRLYD 405
++ +G +LS G P +G+ HP I PT +A + +L +++YD
Sbjct: 328 KIISSLSRIGGYGQLTSMLLSKGRLVPNEGRMTDPAHPAIYPTGVAPQQKLSSLEFKVYD 387
Query: 406 YIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSA----MKNESI 461
+V+ F+ T + V F + + P + G M + ++ +
Sbjct: 388 LVVKRFLATFGDPAISRHTDVSIDVNSHTFKAQGR---SPVYEGWMVFYKPHVRLEQHEL 444
Query: 462 PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
P+ + GDL+ + M E+ T PP ++ L++ ME+ IGT A+ I + +RNY+
Sbjct: 445 PELRKGDLVKNLGIDMEEKFTQPPYRYNQASLLAKMEQEQIGTKATRADIIATLFKRNYI 504
Query: 522 TVTSGRRLVPTSLGIVLV 539
+ + T LG ++
Sbjct: 505 ASSVRGGIEVTDLGFAVI 522
>gi|424812730|ref|ZP_18237970.1| DNA topoisomerase I, archaeal [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756952|gb|EGQ40535.1| DNA topoisomerase I, archaeal [Candidatus Nanosalinarum sp.
J07AB56]
Length = 678
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 121/453 (26%), Positives = 209/453 (46%), Gaps = 26/453 (5%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKA 158
L ++ +D + V D D EG I F V+ + ++P+ V R +FS +T D++
Sbjct: 91 LEDQLEDADEYVNACDLDLEGSVIGFTVLNFI-----ADAPEERVKRMKFSTLTSSDLQE 145
Query: 159 AMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDA-SLISYGPCQTPT 217
A +L + + + AR LD G +R K Q D D +S G Q P
Sbjct: 146 AFDDLDEFDEGMTEAGLARHVLDFYYGINLSRALMKAVQ----DNDRYETLSTGRVQGPA 201
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRG---HIFDKSTCNVFFKAVEK 274
L +R I+ F P+ YW ++ ++G+ W G I+ + + V +
Sbjct: 202 LKLLADRERDIQAFDPDDYW--EIYAQISGL--EAQWRNGDDDRIWSEDEAEATHETVRE 257
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRT 334
V +V P N L + ASS +G+ P +A+ LY QG +SYPRT
Sbjct: 258 AGEADVSEVSKRDYKHRPPIPFNLTGLQKEASSQIGLSPKRTQSVAQNLYEQGLISYPRT 317
Query: 335 ETTQYPENFDLVAVLRQQESSPDWGDHVREVLS-NGISKPRKGKDVGDHPPITPTKLATR 393
E+ + P ++L+Q ++ D D VL + + K+ HP I PT T
Sbjct: 318 ESQKLPPKIGYESILKQLKAQEDLEDGAETVLDKENLYTTQGSKEDDAHPAIYPTG-KTP 376
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKV-AKFSVADEMFTMEAKYLLHPGFTGVMT 452
+ LDG +LY+ + + F+ GD + V FSV +E F+ +AK+ L + +
Sbjct: 377 SGLDGKDRKLYELVAKRFLAVF-GDAAQRRSVETSFSVEEERFSAKAKFTLERNWYDLYE 435
Query: 453 -WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
+ + ++ PDF GD + ++ V + ++T PP+ ++S ++S ME +GT A+
Sbjct: 436 PFVNVSDDPRPDFSEGDTVQVEEVDLEAKETQPPNRYSQSTIVSEMEDRDLGTKATRADT 495
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLVHGYQK 544
I ++ R+++ G R+ T LG+ +V ++
Sbjct: 496 IQSLYDRDFI---DGGRIEVTRLGLAIVEALEE 525
>gi|260801485|ref|XP_002595626.1| hypothetical protein BRAFLDRAFT_64736 [Branchiostoma floridae]
gi|229280873|gb|EEN51638.1| hypothetical protein BRAFLDRAFT_64736 [Branchiostoma floridae]
Length = 684
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 127/230 (55%), Gaps = 4/230 (1%)
Query: 328 YVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPIT 386
++SYPRTET ++ ++ DL +++ Q PDWG VL G PR G + HPPI
Sbjct: 1 FISYPRTETNKFSKDTDLQGLVQLQTVDPDWGGFAAGVLQRG-PNPRNGNKTDNAHPPIH 59
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
PTK L G+ RLY++IVRHF+ L D + + + E FT + ++
Sbjct: 60 PTKYTD--NLQGNEKRLYEFIVRHFLACLSQDAQGQETTVEIDINGEKFTAQGLMIIARN 117
Query: 447 FTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDA 506
+ V + + IP F G+ +++M++ +T+PP LTE++LI+LM+KHGIGTDA
Sbjct: 118 YLDVYPYDKWNAKVIPVFNQGETFQPSAIEMLQGQTSPPPLLTEADLIALMDKHGIGTDA 177
Query: 507 SIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
+ HI I R YV V R VP LG+ LV GY + E+ +P +R+
Sbjct: 178 THAEHIETIKSRMYVGVQQDGRFVPGELGMGLVEGYDAMGYEMSKPHLRA 227
>gi|84489180|ref|YP_447412.1| hypothetical protein Msp_0366 [Methanosphaera stadtmanae DSM 3091]
gi|84372499|gb|ABC56769.1| TopA [Methanosphaera stadtmanae DSM 3091]
Length = 722
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 126/459 (27%), Positives = 200/459 (43%), Gaps = 27/459 (5%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
+KD + + D D EG I F A+R+ +S +R +FSA+T KD+ + N
Sbjct: 96 SKDADRFIHACDYDTEGTLIGFN---ALRYICGEDSIDKSFRMKFSALTKKDLIESYSNA 152
Query: 164 --VKPNIFEARSVDARQELDLRIGCAFTRYQTKFF---QGKYGDLDASLISYGPCQTPTL 218
+K + S + R LD G ++ T +Y L A G QTPTL
Sbjct: 153 YPLKEDKSWVDSGETRHVLDFLFGVNISKSMTDSVLNVTNRYVQLSA-----GRVQTPTL 207
Query: 219 GFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHV 278
ER +I+ F PEPYWL+ L + VA +G IFDK + K K K
Sbjct: 208 AILTEREKEIQKFIPEPYWLIKAKLQKSIVA---DHKKGKIFDKKEVDAILKNC-KGKDA 263
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQ 338
TV + + K P L A + G P QIA+ LY +GY SYPRT + +
Sbjct: 264 TVEKITNRKTKKDLPVPFELGTLQSEAYAQFGFTPRKTQQIAQNLYVEGYTSYPRTSSQK 323
Query: 339 YPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLD 397
PE+ L +L Q P + D + ++ KP +GK + HP I PT + +
Sbjct: 324 LPESLGLPNILSQLSKHPKYKDKISQL--EQPYKPHEGKKTDEAHPAIHPTGTLPK-DIS 380
Query: 398 GDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV--MTWSA 455
D ++YD I FI + + E F+ + + G+ + +
Sbjct: 381 EDYQKIYDLITYRFISIFGKPAEMESIKVELDIGGEPFSFSRQRISKEGWLSLDPYQYKK 440
Query: 456 MKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNI 515
+KNE P+ K G + V E++T PP ++ +I +EK G+GT ++ ++ +
Sbjct: 441 VKNEEFPEIKEGQTTKAK-VASEEKETKPPARYNQASIIRELEKRGLGTKSTRANIVSIL 499
Query: 516 CQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
R YV G+++ + LG +++ +K + M
Sbjct: 500 YTRKYV---EGKKIEVSQLGQQIINTLEKYSERITSEQM 535
>gi|312136406|ref|YP_004003743.1| DNA topoisomerase i [Methanothermus fervidus DSM 2088]
gi|311224125|gb|ADP76981.1| DNA topoisomerase I [Methanothermus fervidus DSM 2088]
Length = 705
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 120/441 (27%), Positives = 197/441 (44%), Gaps = 17/441 (3%)
Query: 115 DCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSV 174
D D EG I + V+ R+ I S K R +FS +T +DI+ A NL + +
Sbjct: 109 DYDIEGTLIGYNVL---RYCIGKKSLKKSLRMKFSTLTKRDIRKAYENLTSIDYGQVNGG 165
Query: 175 DARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPE 234
R LD G +R Q +S G QTPTL V+R +I+ FKP+
Sbjct: 166 ITRHFLDFLFGVNISRALMNSIQNSTKKFVK--LSAGRVQTPTLSILVDREREIKKFKPK 223
Query: 235 PYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQ 294
YW+++ + + IFDK+ K K K+ V V+ + + + P
Sbjct: 224 TYWVIEAKTKF----FTAKFKEQKIFDKNKALKIVKEC-KNKNAIVKSVKITKRYRNPPV 278
Query: 295 ALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQES 354
+ L A G P +A+ LY GY+SYPRT + + P + D +
Sbjct: 279 PFDLTTLQSEAYRLFGFSPRKTQSLAQNLYLGGYISYPRTSSQKLPPSIDYEKIFEGLSK 338
Query: 355 SPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVRHFIG 413
+P + ++ + LS KP +GK + HP I PT + + L+ D +LY+ IV FI
Sbjct: 339 NPKFERYISK-LSKPF-KPYEGKKTDEAHPAIHPTGVMPKN-LNEDESKLYELIVHRFIA 395
Query: 414 TLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQ 473
S+ D F + ++ G+ ++++KNE P+ K GD + I+
Sbjct: 396 VFADKAKIANLRGVLSINDYEFIFNKQKIIKEGWMSFYPYTSVKNEEFPEIKEGDKLKIE 455
Query: 474 SVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTS 533
+ E+KT PP T + LI ME G+GT ++ I+ + R Y+ GR++
Sbjct: 456 KIIKEEKKTKPPARYTAASLIKEMEVRGLGTKSTRAEIISALYDRKYI---EGRKIKVKP 512
Query: 534 LGIVLVHGYQKIDRELVEPTM 554
LGI +++ +K +++ +
Sbjct: 513 LGIKIINILKKYCKKITSEKL 533
>gi|10579972|gb|AAG18918.1| DNA topoisomerase I [Halobacterium sp. NRC-1]
Length = 663
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 159/375 (42%), Gaps = 16/375 (4%)
Query: 193 TKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSV 252
T+F G + IS G Q+PTL V++ +I F P+ YW L L +
Sbjct: 7 TRFLSLSAGQMGEDFISVGRVQSPTLKLIVDKEREIEAFDPDDYWELFADLRKDQTTFEA 66
Query: 253 TW---------SRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMR 303
+ ++++ + F A+ + V V T++ P NT + +R
Sbjct: 67 QYFYEDPADGTEAERVWNEGDADAAFDALRQAGEAVVDSVSRRTRTDDPPAPFNTTQFIR 126
Query: 304 VASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVR 363
A S LG AM IAE LYT GY++YPRT+ T YP++ D +L + + +GD
Sbjct: 127 AAGS-LGYSAGRAMSIAEDLYTAGYITYPRTDNTVYPDDLDERDLLEAFQQTV-FGDDAD 184
Query: 364 EVLSNGISKPRKG-KDVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVY 421
+L P G ++ DHPPI PT R QL D W +Y+ +VR F T+ +
Sbjct: 185 SLLDQDRLSPTSGDEETTDHPPIHPTTDFPDRNQLSEDEWAVYELVVRRFFATVAAPAEW 244
Query: 422 TQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERK 481
E K L+ G+ V + +P + GD + I ++ ++
Sbjct: 245 AHLRVTADADGESLKANGKRLVEAGYHAVYPYYDSSENHVPPVEEGDTLAITDARLDAKQ 304
Query: 482 TTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHG 541
T PP +S LI ME IGT ++ I + R Y+ R PT+L +V
Sbjct: 305 TQPPRRYGQSRLIETMESMDIGTKSTRHNTIEKLYDRGYIENDPPR---PTTLAEAVVEA 361
Query: 542 YQKIDRELVEPTMRS 556
+ +V M S
Sbjct: 362 AEDYADVVVSEEMTS 376
>gi|357489371|ref|XP_003614973.1| DNA topoisomerase [Medicago truncatula]
gi|355516308|gb|AES97931.1| DNA topoisomerase [Medicago truncatula]
Length = 438
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 117/408 (28%), Positives = 200/408 (49%), Gaps = 27/408 (6%)
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V R+E+D + G +T +Q+ + + + +SYG CQ+ LG VER +++ K
Sbjct: 20 AVAYRKEVDFKTGRVWTWFQSFLARKQIPNATNLTLSYGLCQSALLGIVVERFNQVAKPK 79
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFD-KSTCNVFFKAVEKEKHVTV-VDVQSSTKSK 290
+ Y +++ N G VT++ +D KS + ++ EK V V V+ + K
Sbjct: 80 AQKY---NISFNDRGYGPKVTFTSPVWYDAKSKASKKLQSCSDEKATIVEVFVEITNKFH 136
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF-DLVAVL 349
+ P L T+EL + A+ M P M AE LYTQ ++SYPRTET + N +L +++
Sbjct: 137 SPPVPLTTMELEKFAAKYFKMTPKQTMDTAEDLYTQRFISYPRTETDGFSMNTKELRSIV 196
Query: 350 RQQESSPDWGDHVREVL--SNGISK-PRKGKDVG-DHPPITPTKLATRTQLDGDAWR--- 402
+Q WG + ++L + G+ + PR K HPPI P K + R + W+
Sbjct: 197 SKQTKHEKWGSYASDLLDSNKGLWRDPRACKHTDHSHPPIHPIKFSNRKE---SGWKDHQ 253
Query: 403 --LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES 460
LY+ IVRHF+ L D + + + +A + F L G+ + + ++
Sbjct: 254 CVLYELIVRHFLACLSEDALVQKTTVEVDLAGQQFFAMTMTLYKLGYRKMYHYESL-FLG 312
Query: 461 IPDFKP----GDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
F P G+L P+ + ++P + L++ +L+S M++ IGTD++ + IN +
Sbjct: 313 FSKFPPYTAGGELTPMDLIVKGSTYSSPQN-LSDEDLLSRMQQERIGTDSTWHLLINTVI 371
Query: 517 QRNYVTVT---SGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
R YV + R PT LG+ L +GY ++ L +P MR+ Q
Sbjct: 372 GRKYVERKFDGNTWRYEPTKLGLALFNGYDQMKLPLWKPEMRAKMEKQ 419
>gi|156936802|ref|YP_001434598.1| DNA topoisomerase I [Ignicoccus hospitalis KIN4/I]
gi|156565786|gb|ABU81191.1| DNA topoisomerase I [Ignicoccus hospitalis KIN4/I]
Length = 657
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 126/460 (27%), Positives = 209/460 (45%), Gaps = 25/460 (5%)
Query: 95 KLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDK 154
K A +++ + V D D EG I + ++E P+ R F A+T
Sbjct: 85 KYIALISSLSPGSSLYVNACDYDVEGSVIGYIIIE------RFGDPRRSKRMVFHALTPD 138
Query: 155 DIKAAMWNLVKPNIFEARSVD-ARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPC 213
+I+ A WN ++P +E + AR ELD G +R ++ G + +S G
Sbjct: 139 EIRRA-WNSLRPLDWEMINAGLARHELDWIWGINVSRALMHAYRVATGK--SKSLSAGRV 195
Query: 214 QTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVE 273
Q+PTL VER ++ F PEPY+ + L+ + ++ + D N K
Sbjct: 196 QSPTLKEVVERELAVQCFVPEPYFSVSLSAKGVSLEPTLKFETKDEADHFISNCLGK--- 252
Query: 274 KEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333
VVDV + + + P N +L A+ G P IAE LY Y+SYPR
Sbjct: 253 ------VVDVIVNDERLSPPHPFNLPDLQMEAARLYGFSPSKTQSIAEELYLDAYISYPR 306
Query: 334 TETTQYPENFDLVAVLRQQESSPDWGDHVREVL--SNGISKPRKG-KDVGDHPPITPTKL 390
T + +YP++ D +L+ S P + + + + G P G KD HP I PT
Sbjct: 307 TNSQKYPKDLDYANILKGIASVPQYRPLTKALFKETRGRFSPNNGPKDDPAHPAIYPTGK 366
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
+ L D ++YD IVR F+ TL + VY V + F + + G+T
Sbjct: 367 PPK-NLSPDHMKVYDLIVRRFMATLASESVYEVTKVVIEVNGQTFKAVGRRVKWKGWTLY 425
Query: 451 MTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPV 510
+SA + +S+P F G+ + ++ + ++ T PP+ T+++++ ME+ GIGT+A+
Sbjct: 426 YPFSAPQEKSLPSFTKGESLQVKCTRRLQY-TKPPERYTKAKIVKWMERVGIGTEATRAR 484
Query: 511 HINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELV 550
+ + +R Y+ G ++ T LGI + K E+V
Sbjct: 485 IVETLFKRGYLK-NVGSKVYATDLGIGVALVLSKFFPEIV 523
>gi|288559648|ref|YP_003423134.1| DNA topoisomerase I TopA [Methanobrevibacter ruminantium M1]
gi|288542358|gb|ADC46242.1| DNA topoisomerase I TopA [Methanobrevibacter ruminantium M1]
Length = 741
Score = 155 bits (391), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 119/438 (27%), Positives = 191/438 (43%), Gaps = 18/438 (4%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
+K + V D D EG I + A+++ N+ R +FS +T KDI A +
Sbjct: 95 SKGADKFVHACDYDVEGTLIGYN---ALKYACGNNAEAKASRMKFSTLTKKDIVEAYNTM 151
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVE 223
+I + AR LD G + K + + +S G QTPTL V+
Sbjct: 152 RDIDIRQVDHGIARHMLDYYYGMNISSALMKAVRASSSRFIS--LSAGRVQTPTLSILVD 209
Query: 224 RHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVE-KEKHVTVVD 282
R +I++F PEPYW++ + + +A V G IFD+ + + + VT V
Sbjct: 210 REKEIQSFVPEPYWMIKAKSDYDIIADHV---EGKIFDEERAKKIYADCQGADADVTSVK 266
Query: 283 VQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPEN 342
V S + P N L A + G P A+ LY GY SYPRT + + PE+
Sbjct: 267 VTESIRKP--PIPFNLGGLQSEAHTVFGFSPKRTQVAAQNLYVGGYTSYPRTSSQKLPES 324
Query: 343 FDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDV-GDHPPITPTKLATRTQLDGDAW 401
D + P++ H+ ++ + KP +GK HP I PT + + L D
Sbjct: 325 LDFKNIFAGLAKDPEFKKHIFDLPAK--LKPNEGKKTDAAHPAIHPTGVLP-SNLSADEA 381
Query: 402 RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESI 461
++Y IV FI + VADE FT K + + G+ + +N++
Sbjct: 382 KIYSLIVYRFISVFSENSKLETMKVNLKVADEKFTFSRKRVSYEGWLKHYPFKKQENDAF 441
Query: 462 PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
P GD + I + + E++T PP E+ LI +EK +GT A+ + + R Y+
Sbjct: 442 PPINKGDQLKIHKILVEEKETKPPARYNEASLIKELEKRELGTKATRADIVAKLYDRKYI 501
Query: 522 TVTSGRRLVPTSLGIVLV 539
G+++ LGI ++
Sbjct: 502 ---EGKKIEVKPLGINII 516
>gi|345861856|ref|ZP_08814105.1| DNA topoisomerase III family protein [Desulfosporosinus sp. OT]
gi|344325051|gb|EGW36580.1| DNA topoisomerase III family protein [Desulfosporosinus sp. OT]
Length = 725
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 147/545 (26%), Positives = 241/545 (44%), Gaps = 77/545 (14%)
Query: 58 GHIMGLD----FTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAK--DCEFLV 111
GH++ L + KY W K++ L + E K + + N K + + L+
Sbjct: 43 GHLVTLADPELYDEKYKTW-KLEDLPMLPAKMELVVMKETSKQFSVVKNLMKMPEIDQLI 101
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
+ D +EGE + +++ + I K +W S++T++ IK NL +E
Sbjct: 102 IATDAGREGELVARWIIKKAGWRKPI---KRLW---ISSLTERAIKEGFNNLKPGRDYEP 155
Query: 172 --RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
+ + R E D +G TR T + +S G QTPTL VER ++IR
Sbjct: 156 LFAAAECRAEADWLVGLNVTRALTCKHNAQ--------LSAGRVQTPTLAMVVERENEIR 207
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTW----SRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS 285
F P+ YW + + +N +SV W + IFDK+ + V + ++DV+
Sbjct: 208 QFVPKDYWSIKVLVN----EISVHWQDKNGQTRIFDKNKADQLVTKVTGQAG-EILDVKK 262
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY-TQGYVSYPRTETTQYPENFD 344
K + P A + EL R A+ G + ++LY V+YPRT++ E D
Sbjct: 263 EAKKELPPLAYDLTELQRDANRKYGFSAKTTSSVMQQLYENHKLVTYPRTDSRYISE--D 320
Query: 345 LVAVLRQQESSPDWG---DHVREVLSNGISKPRK---GKDVGDHPPITPTKLA-TRTQLD 397
+V+ L ++ S G D R +L N + ++ G V DH I PT+ T ++L
Sbjct: 321 IVSTLPERLKSIALGPYVDFARSILRNKLIITKRFVDGSKVTDHHAIIPTEQPPTLSRLS 380
Query: 398 GDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK 457
+ ++YD IVR F+ L Y Q + + V E FT + K + H G+ V S
Sbjct: 381 SEELKIYDLIVRRFLAVLSPPFEYEQTLVRVGVKGENFTAKGKVIKHKGWRKVYEGSTSP 440
Query: 458 N---------ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME---------- 498
+ +++P+ + G+++ SVK+V KT PP TE+ L+S ME
Sbjct: 441 DDKEEDGEGEQTLPELRKGEMLKNLSVKLVASKTKPPARHTEATLLSAMEHPGKLIDDQK 500
Query: 499 -------KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVE 551
HG+GT A+ I + Y+ G+ ++PTS GI L+ LV
Sbjct: 501 LREAMDQSHGLGTPATRAEIIEKLFNSFYMN-RQGKDIIPTSKGIQLIG--------LVP 551
Query: 552 PTMRS 556
P ++S
Sbjct: 552 PELKS 556
>gi|337747254|ref|YP_004641416.1| DNA topoisomerase III [Paenibacillus mucilaginosus KNP414]
gi|336298443|gb|AEI41546.1| DNA topoisomerase III [Paenibacillus mucilaginosus KNP414]
Length = 734
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 154/548 (28%), Positives = 247/548 (45%), Gaps = 76/548 (13%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEK--REATPKLKLPAFLANEA 104
+ +T GH++ L ++ KY W+ D L S K RE TP+ K + LA
Sbjct: 62 YVVTWALGHLVTLAEPEEYDPKYKTWNLEDLPLLPSKMKLKVIRETTPQFKAISQLAQRG 121
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLV 164
D + L++ D +EGE + +ME VR + K +W S+ TDK I+ L
Sbjct: 122 -DLKELIIATDAGREGELVARWIMELVRWR---KPYKRLW---ISSQTDKAIRDGFAQLK 174
Query: 165 KPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
++ RS R E D IG TR T + ++ G QTPTL +
Sbjct: 175 PGPAYDPLYRSAVCRAEADWLIGLNITRALTCKHNAQ--------LAAGRVQTPTLAAMM 226
Query: 223 ERHDKIRTFKPEPYWLLDLTL-NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV 281
+R +IR+F+ + +W+L L + + S G +FDK+ + + ++ + V
Sbjct: 227 DREAQIRSFQAKDFWMLRAQLGSFQALWRSQAHPDGRLFDKAAADTLLERLKTARSAKVS 286
Query: 282 DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETTQYP 340
++ S KS+ P A + EL R A+ LG + +RLY Q V+YPRT++
Sbjct: 287 ALKVSEKSEPHPLAYDLTELQRDANKRLGFTAKQTSNVLQRLYEQHKLVTYPRTDSRYL- 345
Query: 341 ENFDLVAVLRQQESSPD---------WGDHVREVLSNGISKPRKGKD---VGDHPPITPT 388
+ D+V+ L PD +G + +L+ + ++ D V DH I PT
Sbjct: 346 -SSDMVSTL------PDRLKALLGTPYGASAKGLLARPLPVTKRIVDDSKVSDHHAIIPT 398
Query: 389 KLATRTQLDG-DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
+ QL G D RLYD IVR F+ Y + +A E F + + + G+
Sbjct: 399 DERPQLQLLGADERRLYDLIVRRFLSLFFPAFRYDETAVTLDIAGESFHAKGRIVKDQGW 458
Query: 448 TGVMTWSAMKNES----IPDFKPGDL--IP-------IQSVKMVERK--TTPPDYLTESE 492
V S+ +E+ P+ +P L +P ++ +++ ++K T PP TE+
Sbjct: 459 KAVYDGSSAPSEADDDDAPEEEPSSLQSLPALQLGTELKDLRLSQQKGTTKPPGRYTEAG 518
Query: 493 LISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRR---LVPTSLGIVLVHGYQKIDREL 549
L+S+MEK G+GT P +I ++ T T RR L PT G+ L+ EL
Sbjct: 519 LLSVMEKQGLGT----PATRADIIEKLLSTDTIERRMNTLQPTGKGVQLM--------EL 566
Query: 550 VEPTMRSA 557
V P +RS+
Sbjct: 567 VVPELRSS 574
>gi|389860366|ref|YP_006362605.1| DNA topoisomeraes I [Thermogladius cellulolyticus 1633]
gi|388525269|gb|AFK50467.1| DNA topoisomeraes I [Thermogladius cellulolyticus 1633]
Length = 685
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 129/508 (25%), Positives = 225/508 (44%), Gaps = 20/508 (3%)
Query: 43 PLF---GDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAF 99
PL+ G+ + + S GHI L ++K + + S ++R K K
Sbjct: 47 PLYVYKGNGLEVTVASAAGHIFNL--STKLSGYPVFSYEWAPSFEVDRRSLHIK-KFYQA 103
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L + ++ + D D EG I F +++ + PK RA+FS++T +++ +
Sbjct: 104 LIEACRGRDYYINACDYDIEGSVIGFLIIKF------LGDPKKALRAKFSSLTPAELRES 157
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
L + + + AR ELD G +R + G ++S G QTPTL
Sbjct: 158 FKRLTRLDYEMIEAGLARHELDWLWGVNISRALMSAVERAVGK--RVILSAGRVQTPTLA 215
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
+ ++ + P P + L L + + V + +G +S ++++K+V
Sbjct: 216 YVAQQLTERNLHIPYPIFSLSLVVEKDSARVGASREKGVFETQSEALRVASIIKEKKYVQ 275
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQY 339
V D S P N +L A G P+ +IAERLY + +SYPRT + +
Sbjct: 276 VEDYVEEKVSVPPPFPFNLGDLQGEAYRIYGFSPYKTQEIAERLYLEALISYPRTNSQKL 335
Query: 340 PENFDLVAVLRQQESSPDWGDHVREVLS--NGISKPRKG-KDVGDHPPITPTKLATRTQL 396
P + +L Q +P + V ++LS G KPR+G K+ HP I PT + L
Sbjct: 336 PPTLNYGMILNQLAENPAYRYLVAQLLSETGGRLKPREGPKEDPAHPAIYPTGVKPPHNL 395
Query: 397 DGDAWRLYDYIVRHFIGTLCG--DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
D ++YD +VR F+ ++V + V V E F E +YL+ G+ +
Sbjct: 396 PPDMLKVYDLVVRRFLAVFSRPYEIVRQRVVFSAGVPGETFYSEGQYLVRKGWLLYYYFH 455
Query: 455 AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINN 514
+ IP F+ G+L+ + V + + + PP+ T+ ++ ME IGT+++ I
Sbjct: 456 TPRETRIPSFRKGELVRVVEVDLKKMSSKPPNRPTKMSILKWMESVEIGTESTRARIIET 515
Query: 515 ICQRNYVTVTS-GRRLVPTSLGIVLVHG 541
+ R Y+ ++S G + LG++ V G
Sbjct: 516 LFYRGYLKMSSRGVEITDLGLGVIEVIG 543
>gi|379721098|ref|YP_005313229.1| DNA topoisomerase III [Paenibacillus mucilaginosus 3016]
gi|386723782|ref|YP_006190108.1| DNA topoisomerase III [Paenibacillus mucilaginosus K02]
gi|378569770|gb|AFC30080.1| DNA topoisomerase III [Paenibacillus mucilaginosus 3016]
gi|384090907|gb|AFH62343.1| DNA topoisomerase III [Paenibacillus mucilaginosus K02]
Length = 723
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 154/548 (28%), Positives = 247/548 (45%), Gaps = 76/548 (13%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEK--REATPKLKLPAFLANEA 104
+ +T GH++ L ++ KY W+ D L S K RE TP+ K + LA
Sbjct: 35 YVVTWALGHLVTLAEPEEYDLKYKTWNLEDLPLLPSKMKLKVIRETTPQFKAISQLAQRG 94
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLV 164
D + L++ D +EGE + +ME VR + K +W S+ TDK I+ L
Sbjct: 95 -DLKELIIATDAGREGELVARWIMELVRWR---KPYKRLW---ISSQTDKAIRDGFAQLK 147
Query: 165 KPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
++ RS R E D IG TR T + ++ G QTPTL +
Sbjct: 148 PGPAYDPLYRSAVCRAEADWLIGLNITRALTCKHNAQ--------LAAGRVQTPTLAAMM 199
Query: 223 ERHDKIRTFKPEPYWLLDLTL-NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV 281
+R +IR+F+ + +W+L L + + S G +FDK+ + + ++ + V
Sbjct: 200 DREAQIRSFQAKDFWMLRAQLGSFQALWRSQAHPDGRLFDKAAADTLLERLKTARSAKVS 259
Query: 282 DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETTQYP 340
++ S KS+ P A + EL R A+ LG + +RLY Q V+YPRT++
Sbjct: 260 ALKVSEKSEPHPLAYDLTELQRDANKRLGFTAKQTSNVLQRLYEQHKLVTYPRTDSRYL- 318
Query: 341 ENFDLVAVLRQQESSPD---------WGDHVREVLSNGISKPRKGKD---VGDHPPITPT 388
+ D+V+ L PD +G + +L+ + ++ D V DH I PT
Sbjct: 319 -SSDMVSTL------PDRLKALLGTPYGASAKGLLARPLPVTKRIVDDSKVSDHHAIIPT 371
Query: 389 KLATRTQLDG-DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
+ QL G D RLYD IVR F+ Y + +A E F + + + G+
Sbjct: 372 DERPQLQLLGADERRLYDLIVRRFLSLFFPAFRYDETAVTLDIAGESFHAKGRIVKDQGW 431
Query: 448 TGVMTWSAMKNES----IPDFKPGDL--IP-------IQSVKMVERK--TTPPDYLTESE 492
V S+ +E+ P+ +P L +P ++ +++ ++K T PP TE+
Sbjct: 432 KAVYDGSSAPSEADDDDAPEEEPSSLQSLPALQLGTELKDLRLSQQKGTTKPPGRYTEAG 491
Query: 493 LISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRR---LVPTSLGIVLVHGYQKIDREL 549
L+S+MEK G+GT P +I ++ T T RR L PT G+ L+ EL
Sbjct: 492 LLSVMEKQGLGT----PATRADIIEKLLSTDTIERRMNTLQPTGKGVQLM--------EL 539
Query: 550 VEPTMRSA 557
V P +RS+
Sbjct: 540 VVPELRSS 547
>gi|134045820|ref|YP_001097306.1| DNA topoisomerase I [Methanococcus maripaludis C5]
gi|132663445|gb|ABO35091.1| DNA topoisomerase I [Methanococcus maripaludis C5]
Length = 812
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 121/446 (27%), Positives = 201/446 (45%), Gaps = 26/446 (5%)
Query: 115 DCDKEGENICFEVMEAVRHQININ-SPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARS 173
D D EGE I + H +N K R RFS++T K+I A N PN +
Sbjct: 107 DWDIEGELIGY-------HALNFTCGQKNAHRLRFSSLTKKEIAKAYEN---PNEIDFGL 156
Query: 174 VDA---RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
VDA R ++D G +R Q +S G Q P L F V++ +IR
Sbjct: 157 VDAGDSRHKIDWYFGINVSR---ALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRN 213
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
F P PYW+L+ L+ +A+ +D+ N F+ V+ +K TV DV+ + KS
Sbjct: 214 FVPTPYWVLEALLDNELIAIH---ELEKFWDEEEANNAFEKVKDQKQATVSDVKKTMKSI 270
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLV-AVL 349
+ L R A + P +IA++LY +GY SYPRT + + P++ + +L
Sbjct: 271 PPNPPFDLGALQREAHNMFRFSPKRTQEIAQKLYEKGYCSYPRTSSQKLPDDKAYMDEIL 330
Query: 350 RQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIV 408
+ + D+ ++ ++LS KP GK D HP + + + +L D +LY+ I
Sbjct: 331 KNLSKNKDYKPYIEKILSEN-RKPISGKKDDPAHPAVHAVDVP-KEKLPDDELKLYELIA 388
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGD 468
R I + + E+F + + G+ + ++ +P+ K D
Sbjct: 389 RRTIALYWDNAKREYSKINLDINGEIFKLSGSRTVEEGWHEIYYYTKFDEVELPELKKKD 448
Query: 469 LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRR 528
+I + ++ ++T PP T + +I +EK +GT A+ + + +R YV + G
Sbjct: 449 VINVNNINFEAKETKPPKRYTMASIIKELEKRKLGTKATRADILEKLTKRGYV-IEDG-S 506
Query: 529 LVPTSLGIVLVHGYQKIDRELVEPTM 554
L T LGI + +K E+VE T+
Sbjct: 507 LTVTDLGIGVTETLRKYCPEIVEETL 532
>gi|404330510|ref|ZP_10970958.1| DNA topoisomerase III [Sporolactobacillus vineae DSM 21990 = SL153]
Length = 701
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 147/538 (27%), Positives = 239/538 (44%), Gaps = 73/538 (13%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVD----PLELFSCPTEKREATPKLKLPAFLAN 102
+ +T GH++ L ++ ++Y W D P + + P R+ + +L LA
Sbjct: 36 YIVTWALGHLIELKMPEEYDARYKTWRMEDLPIIPDHMETRPI--RKTSGQLSTIRRLAG 93
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWN 162
D + LV+ D +EGE + +++ +R + K V R S+ TD+ I +N
Sbjct: 94 R-HDLDRLVIATDAGREGELVARWIIDKIRWK------KPVLRLWISSQTDRAINEG-FN 145
Query: 163 LVKPN-----IFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPT 217
+KP+ +++ S R E D +G +R T KY D +S G QTPT
Sbjct: 146 QLKPSRDYDKLYQ--SAVCRSEADWLVGLNVSRALTT----KYNDS----LSAGRVQTPT 195
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSR---GHIFDKSTCNVFFKAVEK 274
L ++R +IR+F+P P+W T+++ ++S WSR IF++ + V+K
Sbjct: 196 LAMILKRDQEIRSFRPVPFW----TIHVQAGSISADWSRDGQSRIFERKQADAI---VQK 248
Query: 275 EKHVTVVDVQS---STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVS 330
KH + V VQS TK + +P + EL R A+ LG + + + LY V+
Sbjct: 249 LKHASAV-VQSLTVKTKKERQPLPFDLTELQREANRRLGFSARKTLNVLQNLYEHHKIVT 307
Query: 331 YPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK----------DVG 380
YPRT++ + R + S +G VR +L +KG+ V
Sbjct: 308 YPRTDSRYLTRDIAATMPERLKAVSSVFGAEVRPILFK-----QKGRVLADFVYNNAKVS 362
Query: 381 DHPPITPTKLATR-TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA 439
DH + PT+ + L D +LY IV F+ + Y + DE
Sbjct: 363 DHHALIPTEQPVYLSDLSDDEEQLYRMIVIRFLALFYPERKYESRKTVLKAGDETLISHE 422
Query: 440 KYLLHPGFTGVMTWSAMKNESIPD-FKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
GF V N ++ K + I SV++ E+ T PP L+E++L++ ME
Sbjct: 423 TVETQAGFREVTDPDHKANSALSAPLKEHQTLQIDSVELQEKMTEPPALLSEADLLTQME 482
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
K+G+GT A+ I + Q VT T+G RL PT G L+ +LV P ++S
Sbjct: 483 KYGLGTPATRADIIEKLIQAESVTRTAGGRLQPTPKGKQLI--------DLVSPELKS 532
>gi|124027789|ref|YP_001013109.1| DNA topoisomerase I [Hyperthermus butylicus DSM 5456]
gi|123978483|gb|ABM80764.1| DNA topoisomerase I [Hyperthermus butylicus DSM 5456]
Length = 682
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 116/435 (26%), Positives = 202/435 (46%), Gaps = 19/435 (4%)
Query: 115 DCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSV 174
D D EG I + ++ A + K RA+FSA+T +D++ A L + + +
Sbjct: 116 DYDIEGSVIGYNILRA------LGVEKRALRAKFSALTRQDVRRAFSRLERLDWDMINAG 169
Query: 175 DARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPE 234
AR ELD G +R + + G + ++S G Q+PTL V R K F P
Sbjct: 170 LARHELDWLWGINISRALMESLRSVTGR--SKVLSAGRVQSPTLVEAVSRTIKRNLFVPL 227
Query: 235 PYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQ 294
PY+ + T+ L G A + + + +S + + ++ V + + P
Sbjct: 228 PYFTVTATVELGGKARRLQVASFEL--RSEAQRVARQLRATGYLVVREYSEYVERIPPPY 285
Query: 295 ALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQES 354
N +L AS LG P++ ++AE LY +G +SYPRT + + P D+ A+++
Sbjct: 286 PFNLGDLQVEASRILGFSPYYTQKLAEELYLEGLISYPRTNSQKIPPTIDISAIVQALVR 345
Query: 355 SPDWGDHVREVL--SNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
+ + V +L + G+ + G K+ HP I PT + L + RLYD IVR F
Sbjct: 346 QTRYRELVEYLLRATRGVLRVNNGPKEDPAHPAIHPTGEPPHSGLSKNHLRLYDLIVRRF 405
Query: 412 IGTLCGDLVYTQKVAKFSVADEMF---TMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGD 468
+ ++ V + A+ ++ E ++ ++ PG+ + W+ E IP G
Sbjct: 406 LASMAPPAVLVR--ARLILSAEGLGSASITGVRIVSPGWMQIYYWAKPSEEYIPRLYRGQ 463
Query: 469 LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRR 528
I ++SV + T PP+ T++ L+ ME GIGT+A+ + + +R Y+ + G R
Sbjct: 464 RIQVKSVSVQTSYTQPPELHTKTSLVKWMESKGIGTEATRARIVELLFERGYLR-SEGGR 522
Query: 529 LVPTSLGIVLVHGYQ 543
+ T LG+ + + Q
Sbjct: 523 VQATELGLTVANILQ 537
>gi|384047183|ref|YP_005495200.1| DNA topoisomerase III [Bacillus megaterium WSH-002]
gi|345444874|gb|AEN89891.1| DNA topoisomerase III [Bacillus megaterium WSH-002]
Length = 692
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 147/508 (28%), Positives = 216/508 (42%), Gaps = 45/508 (8%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEK------REATPKLKLPAFLANEA 104
+ +T GH++ L Y+N K LE EK R+ + + + + LA
Sbjct: 35 YVVTWALGHLVELQTPEDYDNQYKTWRLEDLPIMPEKMKLKVIRKVSSQFRTVSDLAKR- 93
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD L++ D +EGE + +ME VR N P K +W S+ TDK I+ L
Sbjct: 94 KDIGELIIATDAGREGELVARWIMEKVRW----NKPFKRLW---ISSQTDKAIRDGFKQL 146
Query: 164 VKPNIFEARSVDA---RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGF 220
KP R D+ R E D IG TR T ++ +S G QTPTL
Sbjct: 147 -KPGKEFNRLYDSAVCRSEADWLIGLNVTRALTTKYE--------EPLSAGRVQTPTLAM 197
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGH---IFDKSTCNVFFKAVEKEKH 277
+ER I TFKP YW TL + W +G+ IFD+ + E
Sbjct: 198 IIEREQVINTFKPSEYW----TLTAQFSSFEAAWQKGNEKRIFDEKRAKELHSKLSGEAV 253
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTET 336
V + + +++ P LN EL R A+ + + ++LY Q V+YPRT++
Sbjct: 254 VNTIKRKMHKEAQPLPYDLN--ELQRDANKRFNFSAKKTLNVLQKLYEQHKLVTYPRTDS 311
Query: 337 TQYPENFDLVAVLRQQ-ES-SPDWGDHVREVLSNGISKPR--KGKDVGDHPPITPTKLAT 392
D+V+ ++++ ES S + + VR +L N R + V DH I T
Sbjct: 312 RYL--TTDMVSTMKERLESISAVYKEEVRPILRNAQLPKRVVNNEKVSDHHAIIVTDQPV 369
Query: 393 RTQ-LDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
Q L D +LYD I + FI Y A+ V E K +++ GF V
Sbjct: 370 FLQDLSADERKLYDLIAKRFISLFYPAYEYEVVKAELEVNGEQLVASGKQVVNAGFKKVS 429
Query: 452 TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
+ +PD K G + IQ V M T PP TE++L+ MEKH +GT A+
Sbjct: 430 GGESEATVKLPDMKEGSKLSIQDVTMKSAFTEPPQRYTEADLLGQMEKHNLGTPATRADI 489
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLV 539
I + Q + + RL T G L+
Sbjct: 490 IEKLLQNESIDRQNN-RLHATKKGKQLI 516
>gi|410722055|ref|ZP_11361370.1| DNA topoisomerase I, archaeal [Methanobacterium sp. Maddingley
MBC34]
gi|410597861|gb|EKQ52468.1| DNA topoisomerase I, archaeal [Methanobacterium sp. Maddingley
MBC34]
Length = 718
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 125/463 (26%), Positives = 207/463 (44%), Gaps = 25/463 (5%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
+K+ + + D D EG I F A+++ S R +FS +T +D+ A
Sbjct: 95 SKNADRFIHACDYDIEGTLIGFN---ALKYACGEKSLDNAVRMKFSTLTKEDLLKAYNEP 151
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQ---GKYGDLDASLISYGPCQTPTLGF 220
+ + + S +AR LD G +++ T +Y L A G QTPTL
Sbjct: 152 IDLDFNQVDSGEARHVLDFIFGVNISKHLTDSVMKATSRYIQLSA-----GRVQTPTLAI 206
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVE-KEKHVT 279
VER +I++F PEPYWL+ + + +A +G IFDK E K+ V+
Sbjct: 207 LVEREKEIQSFIPEPYWLIKAKIEGDIIA---DHKKGKIFDKKVQKEILSDCEGKDALVS 263
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQY 339
+ V+ + + P L + L A G P IA+ LY++GY SYPRT + +
Sbjct: 264 KISVKETPQLPPVPFDLGS--LQSEAYGVFGFSPKKTQSIAQNLYSEGYTSYPRTSSQKL 321
Query: 340 PENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDG 398
P + +L Q + + + V E L I KPR+GK + HP I PT L + L
Sbjct: 322 PPSIGYKKILGQLKKNAAFRKQV-EKLPEPI-KPREGKKTDEAHPAIHPTGLIPKG-LGR 378
Query: 399 DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKN 458
D +LY+ IV FI + + + + + F K + G+ + ++N
Sbjct: 379 DYQKLYELIVYRFISVFGENGLLETMKTQLDIGGQEFAFSRKRMAKMGWREHYPYRKVEN 438
Query: 459 ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQR 518
+ P K GD + Q V E++T PP ++ LI +EK G+GT ++ I+ + R
Sbjct: 439 DEFPALKEGDRLDAQ-VYSEEKETKPPARYNQASLIRELEKRGLGTKSTRANIISILYDR 497
Query: 519 NYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
YV G+++ LG L+ +K +++ + + +
Sbjct: 498 KYV---EGKKISVNQLGERLIDTLKKYSQKITSEELTREFETK 537
>gi|449664549|ref|XP_004205945.1| PREDICTED: DNA topoisomerase 3-alpha-like [Hydra magnipapillata]
Length = 277
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 121/203 (59%), Gaps = 6/203 (2%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
++E+ +F MTSV GH++ LDF YN W++ P+ LF P + +
Sbjct: 45 IYEFEYKIFNCNCNMIMTSVSGHLIDLDFGGGYNKWNQCAPVALFEAPICRFVPDNFKDI 104
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAV-RHQININSPKTVWRARFSAITDKD 155
L E + C+ L++W D D+EGENI FE++E + + NI+ V+RA+FS IT +
Sbjct: 105 QKTLEREVRKCQALIIWTDGDREGENIGFEIIEVCQKAKSNID----VYRAKFSEITSRA 160
Query: 156 IKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDA-SLISYGPCQ 214
+ A NLV P+ + +V+ R+ELDLRIG +FTR+QT Q ++ + A LISYG CQ
Sbjct: 161 VHQACRNLVAPDKNVSNAVEVRRELDLRIGASFTRFQTMRLQKRFPTVLADQLISYGSCQ 220
Query: 215 TPTLGFCVERHDKIRTFKPEPYW 237
PTLGF VER+ +++ F E ++
Sbjct: 221 FPTLGFVVERYKQVKEFLSEEFY 243
>gi|295704316|ref|YP_003597391.1| DNA topoisomerase III [Bacillus megaterium DSM 319]
gi|294801975|gb|ADF39041.1| DNA topoisomerase III [Bacillus megaterium DSM 319]
Length = 693
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 145/508 (28%), Positives = 217/508 (42%), Gaps = 45/508 (8%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEK------REATPKLKLPAFLANEA 104
+ +T GH++ L Y+N K LE EK R+ + + + + LA
Sbjct: 35 YVVTWALGHLVELQTPEDYDNQYKTWRLEDLPIMPEKMKLKVIRKVSSQFRTVSDLAKR- 93
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD L++ D +EGE + +ME +R N P K +W S+ TDK I+ L
Sbjct: 94 KDIGELIIATDAGREGELVARWIMEKIRW----NKPFKRLW---ISSQTDKAIRDGFKQL 146
Query: 164 VKPNIFEARSVDA---RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGF 220
KP R D+ R E D IG TR T ++ +S G QTPTL
Sbjct: 147 -KPGKEFNRLYDSAVCRSEADWLIGLNVTRALTTKYE--------EPLSAGRVQTPTLAM 197
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGH---IFDKSTCNVFFKAVEKEKH 277
+ER I TFKP YW TL + W +G+ IFD+ + E
Sbjct: 198 IIEREQVINTFKPSEYW----TLTAQFSSFEAAWQKGNEKRIFDEKRAKELHSKLSGEAV 253
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTET 336
V + + +++ P LN EL R A+ + + ++LY Q V+YPRT++
Sbjct: 254 VKTIKRKMHKEAQPLPYDLN--ELQRDANKRFNFSAKKTLNVLQKLYEQHKLVTYPRTDS 311
Query: 337 TQYPENFDLVAVLRQQ-ES-SPDWGDHVREVLSNGISKPR--KGKDVGDHPPITPTKLAT 392
D+V+ ++++ ES S + + VR +L N R + V DH I T
Sbjct: 312 RYL--TTDMVSTMKERLESISAAYKEEVRPILRNAQLPKRVVNNEKVSDHHAIIVTDQPV 369
Query: 393 RTQ-LDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
Q L D +LYD I + FI Y A+ V E K +++ GF V
Sbjct: 370 FLQDLSADERKLYDLIAKRFISLFYPAYEYEVVKAELEVNGEQLVASGKQVVNEGFKKVS 429
Query: 452 TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
+ + +PD + G + IQ V M T PP TE++L+ MEKH +GT A+
Sbjct: 430 SGDSEATVKLPDMEEGSKLLIQDVTMKSAFTEPPQRYTEADLLGQMEKHNLGTPATRADI 489
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLV 539
I + Q + + RL T G L+
Sbjct: 490 IEKLLQNESIDRQNN-RLHATKKGKQLI 516
>gi|294498992|ref|YP_003562692.1| DNA topoisomerase III [Bacillus megaterium QM B1551]
gi|294348929|gb|ADE69258.1| DNA topoisomerase III [Bacillus megaterium QM B1551]
Length = 693
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 146/508 (28%), Positives = 216/508 (42%), Gaps = 45/508 (8%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEK------REATPKLKLPAFLANEA 104
+ +T GH++ L Y+N K LE EK R+ + + + + LA
Sbjct: 35 YVVTWALGHLVELQTPEDYDNQYKTWRLEDLPIMPEKMKLKVIRKVSSQFRTVSDLAKR- 93
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD L++ D +EGE + +ME VR N P K +W S+ TDK I+ L
Sbjct: 94 KDIGELIIATDAGREGELVARWIMEKVRW----NKPFKRLW---ISSQTDKAIRDGFKQL 146
Query: 164 VKPNIFEARSVDA---RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGF 220
KP R D+ R E D IG TR T ++ +S G QTPTL
Sbjct: 147 -KPGTEFNRLYDSAVCRSEADWLIGLNVTRALTTKYE--------EPLSAGRVQTPTLAM 197
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGH---IFDKSTCNVFFKAVEKEKH 277
+ER I TFKP YW TL + W +G+ IFD+ + E
Sbjct: 198 IIEREQVINTFKPSEYW----TLTAQFSSFEAAWQKGNEKRIFDEKRAKELHSKLSGEAV 253
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTET 336
V + + +++ P LN EL R A+ + + ++LY Q V+YPRT++
Sbjct: 254 VKTIKRKMHKEAQPLPYDLN--ELQRDANKRFNFSAKKTLNVLQKLYEQHKLVTYPRTDS 311
Query: 337 TQYPENFDLVAVLRQQ-ES-SPDWGDHVREVLSNGISKPR--KGKDVGDHPPITPTKLAT 392
D+V+ ++++ ES S + + VR +L N R + V DH I T
Sbjct: 312 RYL--TTDMVSTMKERLESISAVYKEEVRSILRNAQLPKRVVNNEKVSDHHAIIVTDQPV 369
Query: 393 RTQ-LDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
Q L D +LYD I + FI Y A+ V E K +++ GF V
Sbjct: 370 FLQDLSADERKLYDLIAKRFISLFYPAYEYEVVKAELEVNGEQLVASGKQVVNAGFKKVS 429
Query: 452 TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
+ +PD + G + IQ V M T PP TE++L+ MEKH +GT A+
Sbjct: 430 GGDSEATVKLPDMEEGSKLLIQDVTMKSAFTEPPQRYTEADLLGQMEKHNLGTPATRADI 489
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLV 539
I + Q + + RL T G L+
Sbjct: 490 IEKLLQNESIDRQNN-RLHATKKGKQLI 516
>gi|415885845|ref|ZP_11547668.1| DNA topoisomerase III [Bacillus methanolicus MGA3]
gi|387588498|gb|EIJ80819.1| DNA topoisomerase III [Bacillus methanolicus MGA3]
Length = 697
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 128/463 (27%), Positives = 206/463 (44%), Gaps = 39/463 (8%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLV 164
KDC ++ D +EGE + +++ I+ K + R S+ TDK I+ +L
Sbjct: 97 KDC---IIATDAGREGELVARWILK------KIHWKKPILRLWISSQTDKAIRDGFNHLK 147
Query: 165 KPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
F+A S R E D IG TR T KY D +S G QTPTL +
Sbjct: 148 PGKQFDALYESAVCRAEADWLIGLNVTRALT----TKYNDP----LSAGRVQTPTLAMII 199
Query: 223 ERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRG---HIFDKSTCNVFFKAVEKEKHVT 279
+R +I+ F P+ YW + + ++ +W R IF K T K +E V
Sbjct: 200 DREKEIQKFVPKEYWTIKAQIG----SLFASWERNGEKRIFSKETAEKIHKKLEGNIAV- 254
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETTQ 338
VV + KS+ +P + EL R A+ G + +RLY Q V+YPRT++
Sbjct: 255 VVSIDRKKKSEQQPLPYDLTELQRDANKRFGFSAKKTSSVLQRLYEQYKLVTYPRTDSRY 314
Query: 339 YPENFDLVAVLRQQESSPDWGDHVREVLSNG----ISKPRKGKDVGDHPPITPTKLATR- 393
+ + + R + S + + VR +L+N + + V DH I PT+
Sbjct: 315 LTTDMEATMLDRLEAMSSGYKEEVRSLLANKGRVIAKRVFNNEKVTDHHAIIPTEERLNI 374
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
+ L D +LYD I R F+ Y A F V E+ + ++ PGF V+
Sbjct: 375 SDLSADERKLYDLIARRFLALFYPSYQYETIHAVFDVNGEILSARETVVVDPGFKRVLGK 434
Query: 454 S--AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
S + N+ + D +++V+M ++ T PP +E++++S MEK G+GT A+
Sbjct: 435 SNDELDNQQLGDLTISQSFKVKNVEMKKKLTDPPLRYSEADILSQMEKFGLGTPATRADI 494
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
I + + V +G R PT G L+ + ++ EL P +
Sbjct: 495 IERLVETEVVERQNG-RFYPTKKGKQLI---ELVNEELKSPEL 533
>gi|138895193|ref|YP_001125646.1| DNA topoisomerase III [Geobacillus thermodenitrificans NG80-2]
gi|196248223|ref|ZP_03146924.1| DNA topoisomerase III [Geobacillus sp. G11MC16]
gi|134266706|gb|ABO66901.1| DNA topoisomerase III [Geobacillus thermodenitrificans NG80-2]
gi|196211948|gb|EDY06706.1| DNA topoisomerase III [Geobacillus sp. G11MC16]
Length = 696
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 142/529 (26%), Positives = 226/529 (42%), Gaps = 56/529 (10%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEK-----REATPKLKLPAFLA 101
+ +T GH++ L D+ KY W D L P + R+ + + + LA
Sbjct: 35 YIVTWALGHLVELKMPEDYDRKYETWRLED---LPIIPKKMGLKVIRQTSHQFRAIERLA 91
Query: 102 N--EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
+ KDC ++ D +EGE + +++ I+ K +WR S+ TD+ I+
Sbjct: 92 KRRDVKDC---IIATDAGREGELVARWILQ------KIDWKKPIWRLWISSQTDQAIRDG 142
Query: 160 MWNLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPT 217
L F+ S R E D IG TR T KY D +S G QTPT
Sbjct: 143 FRQLKPGTQFDRLYESAICRAEADWLIGLNVTRALT----TKYNDP----LSAGRVQTPT 194
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSR---GHIFDKSTCNVFFKAVEK 274
L +ER +I++F P PYW T++ +V+ W R +FDK N + K
Sbjct: 195 LAMIIEREREIQSFVPVPYW----TIHARIGSVTAVWERHGGKRLFDKDEANELMTRL-K 249
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPR 333
+ V V+ KS+ P + EL R A+ G + + +RLY Q V+YPR
Sbjct: 250 GQPARVTSVKRKRKSEPVPLPYDLTELQREANKRFGFSAKKTLSVLQRLYEQHKLVTYPR 309
Query: 334 TETTQYPENFDLVAVLRQQESSPDWGDHVREVLS--NGISKPRKGKD--VGDHPPITPT- 388
T++ P + R P + D + +L+ N + R +D V DH I PT
Sbjct: 310 TDSRYLPSDMKATMTDRLLAMKPGYEDVISSLLTKKNVKAANRVFQDDKVTDHHAIIPTD 369
Query: 389 KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
+ +L D +LYD I R F+ Y F + DE F +++ GF
Sbjct: 370 ERLDLAKLSVDERKLYDMIARRFLALFYPPYEYETATVVFEIGDETFVARETAVVNAGFK 429
Query: 449 GVMTWSAMKNESIP---DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
V+ + E+ P G + ++M + T PP +E++L++ ME++G+GT
Sbjct: 430 AVL--GKEETEAKPTLLHLSEGQTLASVQLEMEQSFTEPPSRYSEADLLAQMERYGLGTP 487
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
A+ I + + V G R PT G L+ + ++ EL P +
Sbjct: 488 ATRADIIERLVETEVVERKDG-RFYPTKKGKQLI---ELVNEELKSPEL 532
>gi|357009679|ref|ZP_09074678.1| DNA topoisomerase III [Paenibacillus elgii B69]
Length = 714
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 148/545 (27%), Positives = 240/545 (44%), Gaps = 74/545 (13%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEK---REATPKLKLPAFLANE 103
+ +T GH++ L ++ KY NW+ +D L L + RE TP+ K A LA
Sbjct: 35 YVVTWALGHLVTLAEPEEYDPKYKNWN-LDDLPLLPSRMKLKIIRETTPQYKAIAQLAKR 93
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWN 162
D E L++ D +EGE + +ME I+ P K +W S+ TDK I+ +
Sbjct: 94 -NDLEQLIIATDAGREGELVARWIME----MIHWKKPFKRLW---ISSQTDKAIRDGFAS 145
Query: 163 LVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGF 220
L ++ RS R E D IG TR T + ++ G QTPTL
Sbjct: 146 LKPGQSYDPLYRSAVCRAEADWLIGLNITRALTCKHNAQ--------LAAGRVQTPTLAA 197
Query: 221 CVERHDKIRTFKPEPYWLLDLTL-NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
++R +I++F+ + YW+L + V S G +FDK+ + + + K +
Sbjct: 198 MMDREREIKSFQAKDYWMLRAQFGSFQAVWRSQAHPDGRLFDKAAADALLERLNKVRSAK 257
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETTQ 338
V ++ + KS+ P A + EL R A+ G + +RLY Q V+YPRT++
Sbjct: 258 VAQLKVTEKSEPHPLAYDLTELQRDANKRHGFTAKQTSNVLQRLYEQHKLVTYPRTDSRY 317
Query: 339 YPENFDLVAVLRQQESSPD---WGDHVREVLSNGISKPRKGKD---VGDHPPITPTKLAT 392
+ D+V+ L + + + + ++ +L+ + ++ D V DH I PT
Sbjct: 318 L--SSDMVSTLPDRLKALNVQPYAAWIKPLLAKPLPVSKRIVDDSKVSDHHAIIPTD--E 373
Query: 393 RTQ---LDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTG 449
R Q L + +LYD IVR FI Y + V E F + + + G+
Sbjct: 374 RPQLHNLSAEERKLYDLIVRRFIALFTPAFRYDETSVTLEVGGEHFHAKGRIVKEAGWKA 433
Query: 450 VMTWSA-------------MKNESIPDFKPGDLIPIQSVKMVERKTT--PPDYLTESELI 494
+ SA +++P +PG + ++ ++ + K T PP TE+ L+
Sbjct: 434 LYEASAGADEDDDTAEDEPASRQTLPPLQPG--MELKEFRLSQHKQTTKPPGRYTEAALL 491
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYVTVTSGRR---LVPTSLGIVLVHGYQKIDRELVE 551
+MEKH +GT A+ I + Q T T RR L PT G L+ ELV
Sbjct: 492 GVMEKHNLGTPATRADIIEKLLQ----TDTIERRMNTLQPTGKGAQLI--------ELVV 539
Query: 552 PTMRS 556
P +R+
Sbjct: 540 PELRT 544
>gi|297619292|ref|YP_003707397.1| DNA topoisomerase I [Methanococcus voltae A3]
gi|297378269|gb|ADI36424.1| DNA topoisomerase I [Methanococcus voltae A3]
Length = 828
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 118/456 (25%), Positives = 198/456 (43%), Gaps = 17/456 (3%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
+KD + D D EGE I + A+ H + K R RFS++T K+I + N
Sbjct: 96 SKDANEYYVATDWDIEGELIGYH---ALHHACGQDIAK---RMRFSSLTKKEILKSFENT 149
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVE 223
+ + D+R ++D G +R Q +S G Q P L F VE
Sbjct: 150 DSIDFGLVDAGDSRHKIDWFFGINISR---ALMQAISSAKRWKTMSTGRVQGPALAFLVE 206
Query: 224 RHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDK----STCNVFFKAVEKEKHVT 279
+ +I+ F P PYW+++ L V H DK N + VE +K
Sbjct: 207 KELEIQKFVPVPYWVINANLKNENENNEVPLIATHEIDKFWDEEEANKAYGNVEGQKEAI 266
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQY 339
V +++ + K + L R A + P +IA++LY +GY SYPRT + +
Sbjct: 267 VEEIKKTKKKIKPYPPFDLGALQREAHNAFRYSPKRTQEIAQKLYEKGYCSYPRTSSQKL 326
Query: 340 PENFDLV-AVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDG 398
P++ + + VL + S ++G + E+L + KD HP I P + + L
Sbjct: 327 PKDMEYMNEVLGKLLKSKEYGKYASEILEKNLKPIEGKKDDPAHPAIHPVDVP-KEALPD 385
Query: 399 DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKN 458
D +LY+ I R + D + E F + H G+ + ++
Sbjct: 386 DEQKLYNLIARRALAAYWDDAEREYSKITVDINGEKFKLSGSRTTHEGWHEIYYFTKFDE 445
Query: 459 ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQR 518
+P+ K G ++PI+S + + ++T PP T + +I +E +GT A+ + + +R
Sbjct: 446 NELPELKKGKVLPIESTEKLAKETKPPKRYTMASIIKELENRHLGTKATRADILEKLTKR 505
Query: 519 NYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
YV + G L T LGI ++ +K E+VE T+
Sbjct: 506 GYV-IEDG-SLSVTELGIGVIETLKKYCPEIVEETL 539
>gi|315924468|ref|ZP_07920690.1| DNA topoisomerase TopA [Pseudoramibacter alactolyticus ATCC 23263]
gi|315622347|gb|EFV02306.1| DNA topoisomerase TopA [Pseudoramibacter alactolyticus ATCC 23263]
Length = 684
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 129/474 (27%), Positives = 206/474 (43%), Gaps = 35/474 (7%)
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT 152
K KL L +AK + ++L D D+EGE I + V A+ P + R F IT
Sbjct: 59 KGKLLTKLKRQAKKSDTVLLATDPDREGEAISWHVANALGM-----DPGSECRIEFHEIT 113
Query: 153 DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGP 212
+ I A+ ++ ++ ++ AR+ LD +G + + + K + K G +S G
Sbjct: 114 KRAINEAIDHVRSVDMDLVQAQQARRVLDRLVGYSVSPFLWK--KVKRG------LSGGR 165
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAV-------SVTWSRGHIFDKSTC 265
Q+ V+R +I F PE YW L+L L G + S R I +
Sbjct: 166 VQSVVTRIIVDREKEIEAFVPEEYWNLNLDLRKQGDPILFLTTFYSENGKRLKIENAEEA 225
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
+ + V+ + VV V+ S+ P T L + A LG M++A+ LY
Sbjct: 226 DRLEQIVKNCPAMQVVKVEKKQSSQKPPLPFTTSTLQQTAYRALGFTSQRTMRVAQALYE 285
Query: 326 QGYVSYPRTETTQY-PENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HP 383
G V+Y RT++T+ PE + + + R V R K+V D H
Sbjct: 286 SGRVTYIRTDSTRLAPEAIEQTKDFIVKTFGETFLGKQRTV-------KRSNKNVQDAHE 338
Query: 384 PITP-----TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
I P T A R LD D ++LY+ I + + + Y A + +F ++
Sbjct: 339 AIRPASVLDTPAAIRDALDADQYKLYNLIWKQMVASQMAAATYNVIKADVACDTLIFKVK 398
Query: 439 AKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
LL PGFT V+ + K+ +P+ GD + + + ++ T PP E+ LI L+E
Sbjct: 399 GDTLLFPGFTKVLGSAVKKSNPLPELVKGDAVDLVKIHKEQKFTNPPPRYNEASLIKLLE 458
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEP 552
GIG ++ I I RNYV V +R PT LGI + + ++V+P
Sbjct: 459 DMGIGRPSTYAPTIATIKSRNYVEVED-KRFRPTELGITVTEMMEVFFPDIVDP 511
>gi|387927675|ref|ZP_10130354.1| DNA topoisomerase III [Bacillus methanolicus PB1]
gi|387589819|gb|EIJ82139.1| DNA topoisomerase III [Bacillus methanolicus PB1]
Length = 696
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 130/467 (27%), Positives = 209/467 (44%), Gaps = 47/467 (10%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLV 164
KDC ++ D +EGE + +++ I+ K + R S+ TDK I+ +L
Sbjct: 97 KDC---IIATDAGREGELVARWILK------KIHWKKPILRLWISSQTDKAIRDGFNHLK 147
Query: 165 KPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
F+A S R E D IG TR T KY D +S G QTPTL +
Sbjct: 148 PGKQFDALYDSAVCRAEADWLIGLNVTRALT----TKYNDP----LSAGRVQTPTLAMMM 199
Query: 223 ERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRG---HIFDKSTCNVFFKAVEKEKHVT 279
+R +I+ F P+ YW + + ++S +W R IF K T + K +
Sbjct: 200 DREKEIQKFVPKEYWTIKAQIG----SLSASWERNGEKRIFSKETAEKIHDKLAGNKAI- 254
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETTQ 338
VV + KS+ +P + EL R A+ G + +RLY Q V+YPRT++
Sbjct: 255 VVSIDRKKKSEQQPLPYDLTELQRDANKRFGFSAKKTSTVLQRLYEQYKLVTYPRTDSRY 314
Query: 339 YPENFDLVAVLRQQESSPDWGDHVREVLSN-GISKPRK---GKDVGDHPPITPTKLATR- 393
+ + + R Q S + + VR +L+N G R+ + V DH I PT+
Sbjct: 315 LTTDMEATMLDRLQAMSSGYKEEVRPLLANKGRVIARRVFNNEKVTDHHAIIPTEERLNI 374
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
+ L D +LYD I R F+ Y A F V E + ++ GF +++
Sbjct: 375 SDLSADERKLYDLIARRFLALFYPAFQYETVHAVFDVNGETLSSRETVVVDAGFKAILS- 433
Query: 454 SAMKNESIPD------FKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDAS 507
KN+ PD G +++++M ++ T PP +E++++SLMEK+G+GT A+
Sbjct: 434 ---KNDDEPDSGQLGDIAKGQSYTVKNIEMDKKLTEPPLRYSEADILSLMEKYGLGTPAT 490
Query: 508 IPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
I + + V +G R PT G L+ + ++ EL P +
Sbjct: 491 RADIIERLVETEVVERQNG-RFYPTKKGKQLI---ELVNDELKSPEL 533
>gi|326791031|ref|YP_004308852.1| DNA topoisomerase III [Clostridium lentocellum DSM 5427]
gi|326541795|gb|ADZ83654.1| DNA topoisomerase III [Clostridium lentocellum DSM 5427]
Length = 721
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 136/531 (25%), Positives = 237/531 (44%), Gaps = 63/531 (11%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREAT------PKLKLPAFLANEA 104
+ +T GH++GL Y N K +E E+ + T + ++ L
Sbjct: 36 YVVTWAMGHLVGLSDPEAYGNQYKTWSMETLPMLPERMKLTVLKGTGKQFQIVKSLMLR- 94
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD + +++ D +EGE + ++ ++ + P K +W S++TDK I NL
Sbjct: 95 KDIDEIIIATDAGREGELVARWTID----KVGVKKPIKRLW---ISSVTDKAISEGFKNL 147
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
+E ++ R E D +G TR T F + +S G Q+ TL
Sbjct: 148 KPGKDYENLYKAAVCRAEGDWLVGLNVTRALTCKFNAQ--------LSAGRVQSATLAMI 199
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRG-HIFDKSTCNVFFKAVEKEKHVTV 280
V R + I+ F+P+PY+ L+ G+ ++ +G FD+ +E K V
Sbjct: 200 VAREEAIKNFQPKPYF--TLSAKCKGIQLAYKGKKGDRFFDEKQIVTLIGKLEGSK-AQV 256
Query: 281 VDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQY 339
+ + ++K + P + EL R A+ G P + + +RLY V +YPRT++
Sbjct: 257 TEYKETSKKQYAPALYDLTELQRDANKRFGFSPKETLSVMQRLYENYKVLTYPRTDSRFL 316
Query: 340 PENFDLVAVLRQQESSPDWGDH---VREVLSNGISKPRKGKD---VGDHPPITPTKLA-T 392
E D+V L+++ ++ G + REVL NGI + D V DH I PT+ +
Sbjct: 317 SE--DIVPTLKERINAIAIGPYKVGAREVLKNGIKSSKHFVDNSKVSDHHAIIPTEESPD 374
Query: 393 RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
++L+ D ++YD +V+ F+ L + Y + V + S E F + K ++ PG+ +
Sbjct: 375 LSKLNSDERKIYDLVVKRFLSVLLPPMAYNEGVLEVSSEGECFVAKGKKVIEPGWKMLYE 434
Query: 453 WSAMKN-----ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK-------- 499
A ++ +S+P+ K G+ + ++ ++ T P TE+ L+S MEK
Sbjct: 435 IEADEDEDEVVQSLPEVKKGETVVLEQFFKTKQMTKAPSRFTEATLLSAMEKPHQYVEVD 494
Query: 500 ----------HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVH 540
GIGT A+ I + Y+ SG+ +VPTS G L+
Sbjct: 495 QKAAKTLGETGGIGTVATRADIIEKLYNMFYIE-KSGKEIVPTSKGKQLIE 544
>gi|402584219|gb|EJW78161.1| DNA topoisomerase [Wuchereria bancrofti]
Length = 401
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/112 (65%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
Query: 451 MTWSAMKNESIP-DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
M W ++ ++ D G + ++ K+ E TTPPDYLTESELISLMEKHGIGTDASIP
Sbjct: 1 MVWQKIEEDAQNYDIVKGSKVNLKDGKICEYTTTPPDYLTESELISLMEKHGIGTDASIP 60
Query: 510 VHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
VHI+NICQRNYVTV S RRL PT LGI LVHGY+KID ELV PTMRS Q
Sbjct: 61 VHISNICQRNYVTVESRRRLKPTKLGIALVHGYRKIDSELVLPTMRSEVESQ 112
>gi|366162462|ref|ZP_09462217.1| DNA topoisomerase III [Acetivibrio cellulolyticus CD2]
Length = 721
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 161/585 (27%), Positives = 247/585 (42%), Gaps = 90/585 (15%)
Query: 6 KKLVPASEIKLARPSLISLLTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGL-- 63
K LV A + +AR + +L Q+ NG + GP + +T GH++ L
Sbjct: 3 KTLVLAEKPSVAR-DIAKVLNSNQKGNGFLA-----GPKY------IVTWALGHLVTLAD 50
Query: 64 --DFTSKYNNWDKVDPLELFSCPTEK---REATPKLKLPAFLANEAKDCEFLVLWLDCDK 118
++ +Y W+ ++ L + E RE + + + L + D + LV+ D +
Sbjct: 51 PESYSDRYKTWN-IEDLPMLPKKMELVVIRETSKQFGVVKNLMHR-DDIDELVIATDSGR 108
Query: 119 EGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKP-----NIFEARS 173
EGE + ++ I K + R S+ TDK IK NL KP N+F S
Sbjct: 109 EGELVARWII------IKAGFRKPIKRLWISSQTDKAIKDGFANL-KPARDYDNLF--FS 159
Query: 174 VDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKP 233
+R E D +G TR T F + +S G QTPTL VER ++IR F P
Sbjct: 160 AQSRSEADWLVGLNVTRALTCKFNAQ--------LSAGRVQTPTLAMIVERENEIRKFVP 211
Query: 234 EPYWLLDLTLNLNGVAVSVTW-----SRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTK 288
+ YW ++N +V W + IFDK + V + +V+V+ K
Sbjct: 212 KDYW----SINAGFEGFTVQWQDKASGQTRIFDKKKADDIVAKVTGQTG-QIVEVRKEAK 266
Query: 289 SKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY-TQGYVSYPRTETTQYPENFDLVA 347
+ P A + EL R A+ G + I ++LY + V+YPRT++ + D+V
Sbjct: 267 RELPPLAYDLTELQRDANRKYGYSAKQTLNIMQKLYESHKLVTYPRTDSRYITD--DIVP 324
Query: 348 VLRQQESSPDWGDH---VREVLSNGISKPRKGKD---VGDHPPITPT-KLATRTQLDGDA 400
L ++ S G + V+ ++ N I ++ D V DH I PT + L+ +
Sbjct: 325 TLTERLKSIAVGPYAKPVQSIIRNKIVVTKRFVDNSKVSDHHAIIPTEQYVNLASLNTEE 384
Query: 401 WRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV---------M 451
+YD IV+ FI L Y Q K V E+F + K + G+ V
Sbjct: 385 RNIYDLIVKRFIAVLNPPFEYEQTTVKVDVKSELFYAKGKIVKSWGWKSVYEGFGKLEED 444
Query: 452 TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME------------- 498
+ S+PD K G + SVK V KT PP TE+ L+S ME
Sbjct: 445 DDDDENSHSLPDIKQGQKAALTSVKPVNGKTKPPARYTEATLLSAMEHPGKFVENKALRE 504
Query: 499 ----KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
G+GT A+ I + YV G+ + PTS GI L+
Sbjct: 505 ALENTSGLGTPATRADIIEKLFNTFYVE-RKGKEIFPTSKGIQLI 548
>gi|150402130|ref|YP_001329424.1| DNA topoisomerase I [Methanococcus maripaludis C7]
gi|150033160|gb|ABR65273.1| DNA topoisomerase I [Methanococcus maripaludis C7]
Length = 814
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 121/461 (26%), Positives = 203/461 (44%), Gaps = 26/461 (5%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININ-SPKTVWRARFSAITDKDIKA 158
L +K+ + D D EGE I + H +N + K R RFS++T K+I
Sbjct: 92 LKKVSKEANKFYVATDWDIEGELIGY-------HALNFSCGQKNAHRLRFSSLTKKEIVK 144
Query: 159 AMWNLVKPNIFEARSVDA---RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQT 215
A PN + VDA R ++D G +R Q +S G Q
Sbjct: 145 AYET---PNEIDFGLVDAGDSRHKIDWYFGINVSR---ALMQAVSSVKRWKTLSTGRVQG 198
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKE 275
P L F V++ +I+ F P PYW+L+ L+ +A+ +D+ N F+ V+ +
Sbjct: 199 PALAFLVDKEMEIKNFVPTPYWVLEALLDNELIAIH---ELEKFWDEEQANEAFEKVKGQ 255
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
K TV DV+ + KS + L R A + P +IA++LY +GY SYPRT
Sbjct: 256 KEATVSDVKKTMKSIPPNPPFDLGALQREAHNMFRFSPKKTQEIAQKLYEKGYCSYPRTS 315
Query: 336 TTQYPENFDLV-AVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATR 393
+ + P++ + +L+ + ++ ++ +LS KP G KD HP + + +
Sbjct: 316 SQKLPDDKAYMDEILKNLSKNKNYKPYIERILSEN-RKPISGKKDDPAHPAVHAVDVP-K 373
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
L D +LY+ I R I + + E F + + G+ + +
Sbjct: 374 EHLPDDELKLYELIARRTIALYWDNTEREYSKINLDINGEPFKLSGSRTVKEGWHEIYYY 433
Query: 454 SAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
+ +PD K D+I + ++ ++T PP T + +I +EK +GT A+ +
Sbjct: 434 TKFDEIELPDLKEKDVINVNNINFEAKETKPPKRYTMASIIKELEKRKLGTKATRADILE 493
Query: 514 NICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
+ +R YV + G L T LGI + +K E+VE T+
Sbjct: 494 KLTKRGYV-IEDG-SLTVTDLGIGVTETLRKYCPEIVEETL 532
>gi|423076079|ref|ZP_17064793.1| DNA topoisomerase [Desulfitobacterium hafniense DP7]
gi|361852896|gb|EHL05094.1| DNA topoisomerase [Desulfitobacterium hafniense DP7]
Length = 729
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 128/475 (26%), Positives = 206/475 (43%), Gaps = 63/475 (13%)
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
D E L++ D +EGE + ++ + I K +W S+ TDK I+ NL
Sbjct: 96 DVEELIIATDAGREGELVARWIIGKAGWKKPI---KRLW---ISSQTDKAIREGFNNLKP 149
Query: 166 PNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVE 223
+E+ + + R + D +G TR T + + +S G QTPTL VE
Sbjct: 150 GKAYESLYAAAECRAQADWYVGLNVTRALTCKYNAQ--------LSAGRVQTPTLALVVE 201
Query: 224 RHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-----SRGHIFDKSTCNVFFKAVEKEKHV 278
R +I+ F P+ YW T+N S++W + +FD+ + + K
Sbjct: 202 REKEIQNFVPKGYW----TINARVQGFSLSWQDKGNGQNRMFDQKKAEQLVQKLRGHKG- 256
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETT 337
V +++ K + PQA + EL R A+ G I ++LY Q V+YPRT++
Sbjct: 257 QVAEIKKEAKREQPPQAYDLTELQRDANRKYGFSAKQTSSIMQQLYEQHKLVTYPRTDSR 316
Query: 338 QYPENFDLVAVLRQQESSPDWGDH---VREVLSNGISKPRKGKD---VGDHPPITPTKLA 391
E D+V L ++ + G + R VL I+ ++ D V DH I PT+
Sbjct: 317 YLSE--DIVPTLPERLKTIAVGPYSELARRVLRTKITPTKRLVDNSKVTDHHAIIPTEQT 374
Query: 392 T-RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
+L + ++YD IVR FI L Y Q K + E+FT + K + G+ V
Sbjct: 375 VFLNKLSPEEAKIYDLIVRRFIAVLSPAFEYEQTTVKVEIQGELFTAKGKIVKQKGWRSV 434
Query: 451 MTWSAMKNE---------SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK-- 499
+E ++PD +P + + +K++ KT PP TE+ L+S ME
Sbjct: 435 YEGREAADEEADHEEQEQNLPDLQPKQTLEVLDLKLLPGKTKPPKRYTEATLLSAMEHPG 494
Query: 500 ---------------HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
G+GT A+ I + Y+ +G+ +VPTS GI L+
Sbjct: 495 QRVNDEALRETLEKTSGLGTPATRADIIEKLFSSFYME-RNGKEIVPTSKGIQLI 548
>gi|408382419|ref|ZP_11179963.1| DNA topoisomerase I [Methanobacterium formicicum DSM 3637]
gi|407814774|gb|EKF85397.1| DNA topoisomerase I [Methanobacterium formicicum DSM 3637]
Length = 718
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 119/462 (25%), Positives = 201/462 (43%), Gaps = 23/462 (4%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
+K+ + + D D EG I F A+++ S R +FS +T +D+ A
Sbjct: 95 SKNADRFIHACDYDIEGTLIGFN---ALKYACGEKSIDNAVRMKFSTLTKEDLLKAYNEP 151
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQ---GKYGDLDASLISYGPCQTPTLGF 220
+ + + S +AR LD G +++ T +Y L A G QTPTL
Sbjct: 152 IDLDFNQVDSGEARHVLDFIFGVNISKHLTDSVMKATSRYIQLSA-----GRVQTPTLAI 206
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTV 280
VER +I++F PEPYWL+ + + +A +G IFDK E + V V
Sbjct: 207 LVEREKEIQSFIPEPYWLIKAKIEGDIIA---DHKKGKIFDKKVQEEILSDCEGQDAV-V 262
Query: 281 VDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP 340
+ + P + L A G P IA+ LY++GY SYPRT + + P
Sbjct: 263 SKINVKETPQLPPVPFDLGSLQSEAYGVFGFSPKKTQSIAQNLYSEGYTSYPRTSSQKLP 322
Query: 341 ENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGD 399
+ +L Q + + + + E L I KP +GK + HP I PT L + L D
Sbjct: 323 PSIGYKKILGQLKKNAAFRKQI-EKLPEPI-KPHEGKKTDEAHPAIHPTGLVPKG-LGRD 379
Query: 400 AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
+LY+ IV FI + + + + + F K + G+ + ++N+
Sbjct: 380 YQKLYELIVYRFISVFGENGLLETMKTQLDIGGQEFAFSRKRMAKMGWREHYPYRKVEND 439
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
P K GD + ++ E++T PP ++ LI +EK G+GT ++ I+ + R
Sbjct: 440 EFPLLKEGDRLNAEAYSE-EKETKPPARYNQASLIRELEKRGLGTKSTRANIISILYDRK 498
Query: 520 YVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
YV G+++ LG L+ +K +++ + + +
Sbjct: 499 YV---EGKKISVNQLGEHLIDTLKKYSQKITSEELTREFETK 537
>gi|219670782|ref|YP_002461217.1| DNA topoisomerase III [Desulfitobacterium hafniense DCB-2]
gi|219541042|gb|ACL22781.1| DNA topoisomerase III [Desulfitobacterium hafniense DCB-2]
Length = 729
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 128/475 (26%), Positives = 206/475 (43%), Gaps = 63/475 (13%)
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
D E L++ D +EGE + ++ + I K +W S+ TDK I+ NL
Sbjct: 96 DVEELIIATDAGREGELVARWIIGKAGWKKPI---KRLW---ISSQTDKAIREGFNNLKP 149
Query: 166 PNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVE 223
+E+ + + R + D +G TR T + + +S G QTPTL VE
Sbjct: 150 GKAYESLYAAAECRAQADWYVGLNVTRALTCKYNAQ--------LSAGRVQTPTLALVVE 201
Query: 224 RHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-----SRGHIFDKSTCNVFFKAVEKEKHV 278
R +I+ F P+ YW T+N S++W + +FD+ + + K
Sbjct: 202 REKEIQNFVPKGYW----TINARVQGFSLSWQDKGNGQNRMFDQRKAEQLVQKLRGHKG- 256
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETT 337
V +++ K + PQA + EL R A+ G I ++LY Q V+YPRT++
Sbjct: 257 QVAEIKKEAKREQPPQAYDLTELQRDANRKYGFSAKQTSSIMQQLYEQHKLVTYPRTDSR 316
Query: 338 QYPENFDLVAVLRQQESSPDWGDH---VREVLSNGISKPRKGKD---VGDHPPITPTKLA 391
E D+V L ++ + G + R VL I+ ++ D V DH I PT+
Sbjct: 317 YLSE--DIVPTLPERLKTIAVGPYSELARRVLRTKITPTKRLVDNSKVTDHHAIIPTEQT 374
Query: 392 T-RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
+L + ++YD IVR FI L Y Q K + E+FT + K + G+ V
Sbjct: 375 VFLNKLSPEEAKIYDLIVRRFIAVLSPAFEYEQTTVKVEIQGELFTAKGKIVKQKGWRSV 434
Query: 451 MTWSAMKNE---------SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK-- 499
+E ++PD +P + + +K++ KT PP TE+ L+S ME
Sbjct: 435 YEGREAADEEADHEEQEQNLPDLQPKQTLEVLDLKLLPGKTKPPKRYTEATLLSAMEHPG 494
Query: 500 ---------------HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
G+GT A+ I + Y+ +G+ +VPTS GI L+
Sbjct: 495 QRVNDEALRETLEKTSGLGTPATRADIIEKLFSSFYME-RNGKEIVPTSKGIQLI 548
>gi|375307020|ref|ZP_09772311.1| topoisomerase IA [Paenibacillus sp. Aloe-11]
gi|375080931|gb|EHS59148.1| topoisomerase IA [Paenibacillus sp. Aloe-11]
Length = 711
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 148/536 (27%), Positives = 225/536 (41%), Gaps = 57/536 (10%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEK--REATPKLKLPAFLANEA 104
+ +T GH++GL D+ SKY +W+ D L K RE+ + K L
Sbjct: 35 YVVTWALGHLVGLAEPEDYDSKYASWNLEDLPILPKSSKLKVLRESNHQFKAVQQLMKR- 93
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLV 164
+D L++ D +EGE + +++ N K R S+ TDK IK L+
Sbjct: 94 QDIGELIVATDAAREGELLARWIIQMA------NWKKPFRRLWISSQTDKAIKEGFAKLL 147
Query: 165 KPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
F+ S R E D IG TR T + + +S G QTPTLG +
Sbjct: 148 PGQQFDRLYESARCRAEADWMIGLNVTRALTCRYNAQ--------LSAGRVQTPTLGMIM 199
Query: 223 ERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVD 282
ER +I F+ + Y L A +FD++ + +E K TVV
Sbjct: 200 EREKEITQFRSQEYDTLTADFGDFQAAWRAENGDSRMFDRTQAETLRRRLEGAKG-TVVS 258
Query: 283 VQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETTQYPE 341
V+ S K++ P A + EL R A+ G + +RLY Q V+YPRT++
Sbjct: 259 VKKSEKNEPHPLAYDLTELQRDANQRYGFSAKQTSNVLQRLYEQHKLVTYPRTDSRYL-- 316
Query: 342 NFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTKLATR-T 394
D+V L+++ SS G + R +L N + ++ D V DH I PT+
Sbjct: 317 TSDMVGTLKERLSSVAVGPYASLARPLLRNNLLITKRIVDDSKVTDHHAIIPTEQTLLLN 376
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
QL + +LYD I R FI Y +V E F ++ + G+ V S
Sbjct: 377 QLSPEERKLYDLIARRFISLFYPPARYDAVAVSVTVEQETFQVKGTTIKDSGWRAVYDGS 436
Query: 455 --AMKNES------------IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKH 500
M +E +P+ K GD + IQ + +T PP TE+ L++ MEKH
Sbjct: 437 HYEMDDEEAEDRENTERDVILPELKKGDAVRIQRSLVRAGRTMPPKRYTEAALLAQMEKH 496
Query: 501 GIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
G+GT A+ I + + + G + PT G L+ EL P +R+
Sbjct: 497 GLGTPATRADLIEKLVSSDTIE-RQGNVMHPTGKGKQLI--------ELAAPQLRT 543
>gi|164686199|ref|ZP_02210229.1| hypothetical protein CLOBAR_02637 [Clostridium bartlettii DSM
16795]
gi|164601801|gb|EDQ95266.1| DNA topoisomerase [Clostridium bartlettii DSM 16795]
Length = 704
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 140/485 (28%), Positives = 221/485 (45%), Gaps = 57/485 (11%)
Query: 53 MTSVCGHIMGL----DFTSKYNNWDKVD----PLELFSC---PTEKREATPKLKLPAFLA 101
+T GH++ L + KY +W+ D P EL + T K+ T K +L
Sbjct: 38 VTWALGHLVTLADPETYDKKYKSWEMNDLPILPKELKTVVIKKTSKQFNTVKAQL----- 92
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAM 160
D E +V+ D +EGE + ++E + +I P K +W S+ TDK IK
Sbjct: 93 -NRNDVEEVVIATDAGREGELVARWIIE----KAHIKKPIKRLW---ISSSTDKAIKEGF 144
Query: 161 WNLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTL 218
L + S AR E D +G TR T + +ASL S G QTPTL
Sbjct: 145 TKLRDGRDYNNLYYSAIARAEADWIVGINATRALTTKY-------NASL-SCGRVQTPTL 196
Query: 219 GFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW----SRGHIFDKSTCNVFFKAVEK 274
+R D+IR FKP+ Y+ LD+ G + ++W + F+K K V
Sbjct: 197 AIISKREDEIRNFKPKDYYTLDVLTEKGGSYLKLSWHDRNNSTSTFNKDKIENIKKKVS- 255
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPR 333
K + +VDV+ S K K P + EL R A+ G + I ++LY V +YPR
Sbjct: 256 NKDLKIVDVKKSNKKKYSPALYDLTELQRDANKIFGYSAKETLSIMQKLYEHHKVLTYPR 315
Query: 334 TETTQYPENFDLVAVLRQQESSPDWGDHVR---EVLSNGISKPRK----GKDVGDHPPIT 386
T++ + D+V L+ + + + ++ + ++L I KP K V DH I
Sbjct: 316 TDSRYLTD--DIVDTLKDRIKAVNTSEYSKVCMKLLKTKI-KPNKSFVDNSKVSDHHAII 372
Query: 387 PTKLAT-RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHP 445
PT+ L ++YD +V+ F+ LC Y Q K E F + +
Sbjct: 373 PTEERVFLGDLSDKERKIYDLVVKRFLSVLCPPFEYEQTTIKGVCEGETFIAKGNKINKL 432
Query: 446 GFTGVMTWSAMKNES---IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGI 502
G+ ++A +E+ I D G+++ ++SVK+ +KT PP YL E+ L++ MEK+ +
Sbjct: 433 GWR--ENYTADDDETYDGIIDVNVGEVLNVESVKIESKKTNPPSYLNEATLLTEMEKNNL 490
Query: 503 GTDAS 507
GT A+
Sbjct: 491 GTVAT 495
>gi|431795310|ref|YP_007222215.1| DNA topoisomerase III [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430785536|gb|AGA70819.1| DNA topoisomerase III [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 727
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 134/475 (28%), Positives = 204/475 (42%), Gaps = 63/475 (13%)
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
D E L++ D +EGE + +++ + I K +W S+ TDK IK NL
Sbjct: 96 DVEELIIATDAGREGELVARWIIQKAGWRKPI---KRLW---ISSQTDKAIKEGFNNLKP 149
Query: 166 PNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVE 223
+E+ + + R + D +G TR T + + +S G QTPTL VE
Sbjct: 150 GKAYESLYAAAECRAQADWYVGLNVTRALTCKYNAQ--------LSAGRVQTPTLALVVE 201
Query: 224 RHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-----SRGHIFDKSTCNVFFKAVEKEKHV 278
R +I+ F P+ YW T++ G + W + IFD+ + + K
Sbjct: 202 REKEIQKFVPKDYW----TIHAQGQGYFLRWQDKSNGQSRIFDEQKVEKLLQRLTG-KQG 256
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETT 337
+ +++ K PQA + EL R A+ G I ++LY Q V+YPRT++
Sbjct: 257 RLTEIKKEAKKDLPPQAYDLTELQRDANRKYGYSAKRTSSIMQQLYEQHKLVTYPRTDSR 316
Query: 338 QYPENFDLVAVLRQQESSPDWGDH---VREVLSNGISKPRKGKD---VGDHPPITPTKLA 391
+ D+VA L ++ S G + R VL I ++ D V DH I PT+ A
Sbjct: 317 YLTD--DIVATLPERLKSIAVGPYSELTRRVLRTKIVTTKRLVDNSKVTDHHAIIPTEQA 374
Query: 392 T-RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
+L + R+YD IVR FI L Y Q K + E+FT + K + G+ V
Sbjct: 375 VFLGKLSQEEARIYDLIVRRFIAVLSPAFEYEQTTIKVDIQGEVFTAKGKIMKSKGWRMV 434
Query: 451 MTWSAMKNE---------SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME--- 498
+ +E S+PD K I + S+K KT PP TE+ L+S ME
Sbjct: 435 YEGNDSIDEEGDQEDQEQSLPDLKANQEIELLSIKSASGKTKPPKRYTEATLLSAMEHPG 494
Query: 499 --------------KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
G+GT A+ I + Y+ +G+ + PTS GI LV
Sbjct: 495 QRLEDAKLRETLEKTSGLGTPATRADIIEKLFNSFYME-RNGKEITPTSKGIQLV 548
>gi|390456337|ref|ZP_10241865.1| DNA topoisomerase III [Paenibacillus peoriae KCTC 3763]
Length = 711
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 147/536 (27%), Positives = 224/536 (41%), Gaps = 57/536 (10%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEK--REATPKLKLPAFLANEA 104
+ +T GH++GL D+ SKY +W+ D L K RE+ + K L
Sbjct: 35 YVVTWALGHLVGLAEPEDYDSKYASWNLEDLPILPKSSKLKVLRESNHQFKAVHQLMKR- 93
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLV 164
+D L++ D +EGE + +++ N K R S+ TDK IK L+
Sbjct: 94 QDIGELIVATDAAREGELLARWIIQMA------NWKKPFRRLWISSQTDKAIKEGFAKLL 147
Query: 165 KPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
F+ S R E D IG TR T + + +S G QTPTLG +
Sbjct: 148 PGQQFDRLYESARCRAEADWMIGLNVTRALTCRYNAQ--------LSAGRVQTPTLGMIM 199
Query: 223 ERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVD 282
ER +I F+ + Y L A +FD++ + +E K TV
Sbjct: 200 EREKEITQFRSQEYDTLTADFGDFQAAWRAENGDSRMFDRAQAETLRRRLEGAKG-TVAS 258
Query: 283 VQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETTQYPE 341
V+ S K++ P A + EL R A+ G + +RLY Q V+YPRT++
Sbjct: 259 VKKSEKNEPHPLAYDLTELQRDANQRYGFSAKQTSNVLQRLYEQHKLVTYPRTDSRYL-- 316
Query: 342 NFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTKLATR-T 394
D+V L+++ SS G + R +L N + ++ D V DH I PT+
Sbjct: 317 TSDMVGTLKERLSSVAVGPYASLARPLLRNNLPITKRIVDDSKVTDHHAIIPTEQTLLLN 376
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
QL + +LYD I R FI Y +V E F ++ + G+ V S
Sbjct: 377 QLSPEERKLYDLIARRFISLFYPPARYDAVAVSVTVEQETFQVKGTTIKDSGWRAVYDGS 436
Query: 455 --AMKNES------------IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKH 500
M +E +P+ K GD + IQ + +T PP TE+ L++ MEKH
Sbjct: 437 HYEMDDEEAEDRENTEHGVILPELKKGDAVRIQRCLVRAGRTMPPKRYTEAALLAQMEKH 496
Query: 501 GIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
G+GT A+ I + + + G + PT G L+ EL P +R+
Sbjct: 497 GLGTPATRADLIEKLVSSDTIE-RQGNVMHPTGKGKQLI--------ELAAPQLRT 543
>gi|159906081|ref|YP_001549743.1| DNA topoisomerase I [Methanococcus maripaludis C6]
gi|159887574|gb|ABX02511.1| DNA topoisomerase I [Methanococcus maripaludis C6]
Length = 814
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 119/461 (25%), Positives = 204/461 (44%), Gaps = 26/461 (5%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININ-SPKTVWRARFSAITDKDIKA 158
L +K+ + D D EGE I + H +N + K R RFS++T K+I
Sbjct: 92 LKKVSKEANKFYVATDWDIEGELIGY-------HALNFSCGQKNAHRLRFSSLTKKEIVK 144
Query: 159 AMWNLVKPNIFEARSVDA---RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQT 215
A PN + VDA R ++D G +R Q +S G Q
Sbjct: 145 AYET---PNEIDFGLVDAGDSRHKIDWYFGINVSR---ALMQAVSSVKRWKTLSTGRVQG 198
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKE 275
P L F V++ +I+ F P PYW+L+ L+ +A+ +D+ N F+ V+ +
Sbjct: 199 PALAFLVDKEMEIKNFVPTPYWVLEALLDNELIAIH---ELEKFWDEDEANKAFEKVKDQ 255
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
K TV DV+ + KS + L R A + P +IA++LY +GY SYPRT
Sbjct: 256 KQATVSDVKKTMKSIPPNVPFDLGTLQREAHNMFRFSPKKTQEIAQKLYEKGYCSYPRTS 315
Query: 336 TTQYPENFD-LVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATR 393
+ + P++ + +L+ + ++ ++ +L N KP GK D HP + + +
Sbjct: 316 SQKLPDDKAYMEEILKNLSKNKNYRPYIETIL-NENRKPISGKKDDPAHPAVHAVDVP-K 373
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
L D +LY+ I R I + + E+F + + G+ + +
Sbjct: 374 EHLPDDELKLYELIARRTIALYWDNAEREYSKINLDINGEIFKLSGSRTVKEGWHEIYYY 433
Query: 454 SAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
+ +P+ K D++ + ++ ++T PP T + +I +EK +GT A+ +
Sbjct: 434 TKFDEIELPELKETDIVKVNNINFEAKETKPPKRYTMASIIKELEKRKLGTKATRADILE 493
Query: 514 NICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
+ +R YV + G L T LGI + +K E+VE T+
Sbjct: 494 KLTKRGYV-IEDG-SLTVTDLGIGVTETLRKYCPEIVEETL 532
>gi|150398914|ref|YP_001322681.1| DNA topoisomerase I [Methanococcus vannielii SB]
gi|150011617|gb|ABR54069.1| DNA topoisomerase I [Methanococcus vannielii SB]
Length = 817
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 121/460 (26%), Positives = 199/460 (43%), Gaps = 24/460 (5%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L +K+ + D D EGE I + + Q K R RFS++T K+I +
Sbjct: 92 LKKVSKEASKFYVATDFDIEGELIGYHALSHACGQ------KNAHRLRFSSLTKKEIIKS 145
Query: 160 MWNLVKPNIFEARSVDA---RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTP 216
N PN + VDA R ++D G +R Q +S G Q P
Sbjct: 146 FEN---PNQIDFGLVDAGDSRHKIDWYFGINVSRA---LMQAVSSAKRWKTLSTGRVQGP 199
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEK 276
L F V++ +I+ F P PYW+L+ L+ N A+ D+ ++ V+ EK
Sbjct: 200 ALAFLVDKEIEIKNFIPTPYWVLEAVLDNNLKALH---ELEKFTDEKRAKEAYEKVKNEK 256
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTET 336
V +++ + KS + L R A + P ++A++LY +GY SYPRT +
Sbjct: 257 EALVTEIKKTLKSIPPNVPFDLGALQREAHNVFRFSPKKTQEVAQKLYEKGYCSYPRTSS 316
Query: 337 TQYPENFDLV-AVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRT 394
+ P++ + VL+ + ++ ++ +LS G KP GK D HP I + +
Sbjct: 317 QKLPDDKAYMDEVLKNLSKNKEYSKYIELILSEG-RKPVDGKKDDPAHPAIHAVDVP-KE 374
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
L D +LY+ I R I D + E F + + G+ + ++
Sbjct: 375 NLPDDELKLYELIARRTIALYLDDAKREYSKISLEINGEPFKLNGSRTIEEGWHELYYFT 434
Query: 455 AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINN 514
+P K DL+ I + E++T PP T + +I +EK +GT A+ +
Sbjct: 435 KFDEIELPTLKKKDLLRINEIAFEEKETKPPKRYTMASIIKELEKRTLGTKATRADILEK 494
Query: 515 ICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
+ +R YV + G L T LGI + +K E+VE T+
Sbjct: 495 LTKRGYV-IDDG-SLTVTELGIGVTETLRKFCPEIVEETL 532
>gi|448237916|ref|YP_007401974.1| DNA topoisomerase III [Geobacillus sp. GHH01]
gi|445206758|gb|AGE22223.1| DNA topoisomerase III [Geobacillus sp. GHH01]
Length = 697
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 137/525 (26%), Positives = 228/525 (43%), Gaps = 48/525 (9%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEK-----REATPKLKLPAFLA 101
+ +T GH++ L D+ KY W D L P + R+ + + + LA
Sbjct: 35 YIVTWALGHLVELKMPEDYDRKYETWRLED---LPIIPKKMGLKVIRQTSHQFRAIERLA 91
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMW 161
D + +++ D +EGE + ++E I K +WR S+ TD+ I+
Sbjct: 92 KRP-DVKDVIIATDAGREGELVARWILEM------IGWTKPIWRLWISSQTDRAIRDGFR 144
Query: 162 NLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
L F+ +S R E D IG +R T KY D +S G QTPTL
Sbjct: 145 QLKPGAQFDRLYQSAVCRAEADWLIGLNVSRALTT----KYNDP----LSAGRVQTPTLA 196
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSR--GH-IFDKSTCNVFFKAVEKEK 276
+ER +I++F P PYW T+ +++ W R GH +FD+ ++ +
Sbjct: 197 MIIEREREIQSFVPVPYW----TIRAKIGSITAVWERHGGHRLFDQDEAKQLLARLDGQP 252
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTE 335
VV V+ KS+ P + EL R A+ G + + +RLY Q V+YPRT+
Sbjct: 253 -ARVVSVKRKRKSEPAPLPYDLTELQRDANKRFGFSAKKTLSVLQRLYEQHKLVTYPRTD 311
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPR----KGKDVGDHPPITPT-KL 390
+ P + + R + D + +L+ G +K V DH I PT +
Sbjct: 312 SRYLPSDMEATMTERLLAMKSGYEDVIAPLLAKGKAKAAKRVFNDDKVTDHHAIVPTDER 371
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
++L D +LYD I R F+ A F + EMF + +++ GF V
Sbjct: 372 LNLSRLSTDERKLYDLIARRFLALFFPPYESETTTAVFDIGGEMFVAKETAVVNAGFQAV 431
Query: 451 MTWSAMKNE-SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
++ K + ++ G +P +++ + T PP +E++L++ MEK+G+GT A+
Sbjct: 432 LSKEDNKAQPTLLHLAEGQTLPSVQLELEQSFTEPPARYSEADLLAQMEKYGLGTPATRA 491
Query: 510 VHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
I + + V G R PT G L+ + ++ EL P +
Sbjct: 492 DIIERLVETEVVERKDG-RFYPTKKGKQLI---ELVNEELKSPEL 532
>gi|421075732|ref|ZP_15536739.1| DNA topoisomerase III [Pelosinus fermentans JBW45]
gi|392526291|gb|EIW49410.1| DNA topoisomerase III [Pelosinus fermentans JBW45]
Length = 730
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 118/419 (28%), Positives = 186/419 (44%), Gaps = 47/419 (11%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD +V+ D +EGE + ++E + +IN P K +W S++TDK IK L
Sbjct: 95 KDVSEIVIATDAGREGELVARWIIE----KAHINKPIKRLW---ISSVTDKAIKEGFSKL 147
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
+E+ S AR E+D +G TR T + + +S G QTPTL
Sbjct: 148 RPGKEYESLYASAVARAEVDWLVGINATRALTCKYNAQ--------LSCGRVQTPTLAII 199
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWS-----RGHIFDKSTCNVFFKAVEKEK 276
R ++I+TFKP+ Y+ + T + + W FDKS C V K K
Sbjct: 200 AAREEEIKTFKPKEYYGISAT---GSNHLKLIWQDKNTKNTRTFDKSVCEALLNTV-KNK 255
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTE 335
+ VV++ + K K PQ + EL R + G P I +RLY V +YPRT+
Sbjct: 256 NAEVVEIDKAYKKKFSPQLYDLTELQRDGNRLFGFSPKETTSIMQRLYENYKVLTYPRTD 315
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKD-------VGDHPPITPT 388
+ + D+V L+ + + G + ++ S + KP KG V DH I PT
Sbjct: 316 SRYI--STDIVDTLKDRVKACSVGPY-SQIASAILKKPIKGNSSFVDNNKVSDHHAIIPT 372
Query: 389 -KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
++ + + ++YD +V+ F+ L Y Q K + E+F K ++ PG+
Sbjct: 373 EQMPMLSSMSDMERKIYDLVVKRFLAALYPPFEYEQITLKAKIGGEVFIATGKTIIAPGW 432
Query: 448 TGVMTWSAMKNES--------IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
+ + +E+ +P GD I I SV + + +T PP E L+S ME
Sbjct: 433 KAIYEHAGEDDEAKEDVVEQLLPKINRGDTISITSVILTKGETKPPAPFNEGTLLSAME 491
>gi|89897653|ref|YP_521140.1| DNA topoisomerase III [Desulfitobacterium hafniense Y51]
gi|89337101|dbj|BAE86696.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 729
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 127/475 (26%), Positives = 205/475 (43%), Gaps = 63/475 (13%)
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
D E L++ D +EGE + ++ + I K +W S+ TDK I+ NL
Sbjct: 96 DVEELIIATDAGREGELVARWIIGKAGWKKPI---KRLW---ISSQTDKAIREGFNNLKP 149
Query: 166 PNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVE 223
+E+ + + R + D +G TR T + + +S G QTPTL VE
Sbjct: 150 GKAYESLYAAAECRAQADWYVGLNVTRALTCKYNAQ--------LSAGRVQTPTLALVVE 201
Query: 224 RHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-----SRGHIFDKSTCNVFFKAVEKEKHV 278
R +I+ F P+ YW T+N S++W + +FD+ + + K
Sbjct: 202 REKEIQNFVPKGYW----TINARVQGFSLSWQDKGNGQNRMFDQKKAEQLVQKLRGHKG- 256
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETT 337
V +++ K + PQA + EL R A+ G I ++LY Q V+YPRT++
Sbjct: 257 QVAEIKKEAKREQPPQAYDLTELQRDANRKYGFSAKQTSSIMQQLYEQHKLVTYPRTDSR 316
Query: 338 QYPENFDLVAVLRQQESSPDWGDH---VREVLSNGISKPRKGKD---VGDHPPITPTKLA 391
E D+V L ++ + G + R VL I+ ++ D V DH I PT+
Sbjct: 317 YLSE--DIVPTLPERLKTIAVGPYSELARRVLRTKITPTKRLVDNSKVTDHHAIIPTEQT 374
Query: 392 T-RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
+L + ++YD IV FI L Y Q K + E+FT + K + G+ V
Sbjct: 375 VFLNKLSPEEAKIYDLIVHRFIAVLSPAFEYEQTTVKVEIQGELFTAKGKIVKQKGWRSV 434
Query: 451 MTWSAMKNE---------SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK-- 499
+E ++PD +P + + +K++ KT PP TE+ L+S ME
Sbjct: 435 YEGREAADEEADHEEQEQNLPDLQPKQTLEVLDLKLLPGKTKPPKRYTEATLLSAMEHPG 494
Query: 500 ---------------HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
G+GT A+ I + Y+ +G+ +VPTS GI L+
Sbjct: 495 QRVNDEALRETLEKTSGLGTPATRADIIEKLFSSFYME-RNGKEIVPTSKGIQLI 548
>gi|255526553|ref|ZP_05393461.1| DNA topoisomerase III [Clostridium carboxidivorans P7]
gi|296187531|ref|ZP_06855926.1| DNA topoisomerase [Clostridium carboxidivorans P7]
gi|255509738|gb|EET86070.1| DNA topoisomerase III [Clostridium carboxidivorans P7]
gi|296048053|gb|EFG87492.1| DNA topoisomerase [Clostridium carboxidivorans P7]
Length = 731
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 131/479 (27%), Positives = 204/479 (42%), Gaps = 65/479 (13%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD +V+ D +EGE + ++E R IN P K +W S+ TDK I NL
Sbjct: 95 KDVVEIVIATDAGREGELVARWIIEKAR----INKPIKRLW---ISSQTDKAINEGFRNL 147
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
+ ++ R+ +R E D +G TR T + +S G QTPTL
Sbjct: 148 KPASQYDNLYRAAQSRAEADWIVGLNVTRALTCKHNAQ--------LSAGRVQTPTLAMI 199
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHI--FDKSTCNVFFKAVEKEKHVT 279
V R ++I+ FKP+ Y+ +T + NG + +GH FD+ N V + +
Sbjct: 200 VHREEEIKNFKPKDYY--SITGSANGYTLQWQGGKGHFNTFDEDFANKIVSKVNNQ-NGK 256
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETTQ 338
VVDV S K K P + EL R A+ G + I +RLY +++YPRT++
Sbjct: 257 VVDVTKSDKKKYAPALYDLTELQRDANRLFGFSAKQTLSIMQRLYENYKFLTYPRTDSRY 316
Query: 339 YPENFDLVAVLRQQESSPDWGDHVR---EVLSNGISKPRKG----KDVGDHPPITPT-KL 390
+ D+V L + + G++ + E++ I + KG V DH I PT +
Sbjct: 317 ISD--DIVPTLPDRLKAISVGNYSKFAMEIMKGKI-RAHKGFVDNSKVSDHHAIIPTEER 373
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
++L + ++YD +V+ F+ L Y Q K V E F K + G+ V
Sbjct: 374 VNLSKLSNEERKVYDLVVKRFLSVLLPPFEYVQTTVKVEVNGENFVASGKVIKSKGWKAV 433
Query: 451 MTW-----------SAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
+ +K + +P GD I + VKM + +T PP E L+S ME
Sbjct: 434 YDKDEDFDDNDAHENELKEQVLPQINKGDSIKLTGVKMHKGQTKPPARFNEGTLLSAMEN 493
Query: 500 ------------------HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVH 540
G+GT A+ I + Y+ G+ ++PTS G LV
Sbjct: 494 PQKYINMNKEYAKTLGETGGLGTVATRADIIEKLFNTFYLE-KKGKEIIPTSKGKQLVE 551
>gi|56420223|ref|YP_147541.1| DNA topoisomerase III [Geobacillus kaustophilus HTA426]
gi|56380065|dbj|BAD75973.1| DNA topoisomerase III [Geobacillus kaustophilus HTA426]
Length = 697
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 139/524 (26%), Positives = 229/524 (43%), Gaps = 50/524 (9%)
Query: 53 MTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEK-----REATPKLKLPAFLANE 103
+T GH++ L D+ KY W D L P + R+ + + + LA
Sbjct: 37 VTWALGHLVELKMPEDYDRKYETWRLED---LPIIPKKMGLKVIRQTSHQFRAIERLAKR 93
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
D + +++ D +EGE + ++E I K +WR S+ TD+ I+ L
Sbjct: 94 P-DVKDVIIATDAGREGELVARWILEM------IGWTKPIWRLWISSQTDRAIRDGFRQL 146
Query: 164 VKPNI-FEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGF 220
KP + FE +S R E D IG +R T KY D +S G QTPTL
Sbjct: 147 -KPGVQFERLYQSAVCRAEADWLIGLNVSRALTT----KYNDP----LSAGRVQTPTLAM 197
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSR--GH-IFDKSTCNVFFKAVEKEKH 277
+ER +I++F P PYW T+ +++ W R GH +FD+ N + K +
Sbjct: 198 IIEREREIQSFVPVPYW----TIRAKIGSITAVWERHGGHRLFDQDEANRLMTRL-KGQP 252
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTET 336
V ++ KS+ P + EL R A+ G + + +RLY Q V+YPRT++
Sbjct: 253 ARVTSIKRKRKSEPAPLPYDLTELQRDANKRFGFSAKKTLSVLQRLYEQHKLVTYPRTDS 312
Query: 337 TQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPR----KGKDVGDHPPITPT-KLA 391
P + + R + D + +L+ G +K V DH I PT +
Sbjct: 313 RYLPSDMEATMTERLLAMKSGYEDVIAPLLAKGKAKAAKRVFNDDKVTDHHAIVPTDERL 372
Query: 392 TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
++L D +LYD I R F+ A F + E F + +++ GF V+
Sbjct: 373 NLSRLSTDERKLYDLIARRFLALFYPPHESETTTAVFDIGGETFVAKETAVVNAGFQAVL 432
Query: 452 TWSAMKNE-SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPV 510
+ K + ++ G +P +++ + T PP +E++L++ MEK+G+GT A+
Sbjct: 433 SKEDNKAQPTLLHLAEGQTLPSVQLELEQSFTEPPARYSEADLLAQMEKYGLGTPATRAD 492
Query: 511 HINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
I + + V G R PT G L+ + ++ EL P +
Sbjct: 493 IIERLVETEVVERKDG-RFYPTKKGKQLI---ELVNEELKSPEL 532
>gi|374996454|ref|YP_004971953.1| DNA topoisomerase III [Desulfosporosinus orientis DSM 765]
gi|357214820|gb|AET69438.1| DNA topoisomerase III [Desulfosporosinus orientis DSM 765]
Length = 728
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 140/531 (26%), Positives = 232/531 (43%), Gaps = 73/531 (13%)
Query: 58 GHIMGLD----FTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEF--LV 111
GH++ L + KY +W K++ L + E K + N + EF L+
Sbjct: 43 GHLVTLADPELYDEKYKDW-KMEDLPMLPDKMELVVMKETAKQFGVVKNLMRSQEFSDLI 101
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
+ D +EGE + +++ + + K +W S++T++ IK +L +EA
Sbjct: 102 IATDAGREGELVARWIIKKAGWKKPL---KRLW---ISSLTERAIKEGFQHLKPGKEYEA 155
Query: 172 --RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
+ + R E D +G TR T + + +S G QTPTL VER +I+
Sbjct: 156 LYAAAECRAEADWLVGLNVTRALTCKYNAQ--------LSAGRVQTPTLAMIVEREQEIK 207
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTW--SRGHIFDKSTCNVFFKAVEKEKHV-TVVDVQSS 286
F P+ YW T+NL ++ W S G + A + + H VV+V+
Sbjct: 208 NFVPKDYW----TINLRARGFNLRWQDSNGQTRIFAKEKAEALAAKLKGHSGEVVEVKRD 263
Query: 287 TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY-TQGYVSYPRTETTQYPENFDL 345
K + P A + EL R A+ G + ++LY V+YPRT++ E D+
Sbjct: 264 AKKELPPLAYDLTELQRDANRKYGFSAKTTSSVMQQLYENHKLVTYPRTDSRYISE--DM 321
Query: 346 VAVLRQQESSPDWGDHVREVLSNGISKPR--------KGKDVGDHPPITPTKL-ATRTQL 396
V+ L ++ S G +V L+ GI + + G V DH I PT+ ++L
Sbjct: 322 VSTLPERLKSIALGPYVN--LARGILRNKPIVTKRFVDGSKVSDHHAIIPTEQPPALSRL 379
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG----FTGVMT 452
+ + ++YD IV+ F+ L Y Q + K +V E+FT + K + G + G T
Sbjct: 380 NSEELKIYDLIVKRFLAVLSAPFEYEQTLVKVAVQKEVFTAKGKIVKKLGWRSVYEGQGT 439
Query: 453 W-------SAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME------- 498
W +++P+ G+++ SV + KT PP TE+ L+S ME
Sbjct: 440 WDDDSDDGEKEAEQTLPEISRGEILSNLSVDLASGKTKPPSRHTEATLLSAMEHPGKLIG 499
Query: 499 ----------KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
HG+GT A+ I + Y++ G+ +VPTS GI L+
Sbjct: 500 DQKLREAMEQSHGLGTPATRAEIIEKLYNSFYMS-RQGKEIVPTSKGIQLI 549
>gi|402468347|gb|EJW03513.1| hypothetical protein EDEG_00195 [Edhazardia aedis USNM 41457]
Length = 1086
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 110/198 (55%), Gaps = 10/198 (5%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
TSV GH+ DF S+YN+W V+P L S +++ + + L A+ + L++
Sbjct: 48 FTSVLGHLFNNDFGSEYNDWANVNPKSLLSADIQRKVVKENINICKNLKKLAQKADLLII 107
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGENI E+ + V +N+ RA FS IT ++IK + NL N +
Sbjct: 108 WTDCDREGENIGCEIRDIVYQVRKLNTK----RAVFSGITLREIKNSFENLKNLNELASE 163
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V+AR ELDLRIG AFTR QT F S+ISYGPCQ PTLGF V+R + F
Sbjct: 164 AVNARIELDLRIGSAFTRLQTLSFNR------GSVISYGPCQIPTLGFVVDRMLEKENFI 217
Query: 233 PEPYWLLDLTLNLNGVAV 250
E ++ L+L + V +
Sbjct: 218 GENFFTLNLIITKENVPI 235
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 98/197 (49%), Gaps = 7/197 (3%)
Query: 254 WSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGP 313
W RG++FDK+ FKA+ V V+ K +P L TVEL + +S +
Sbjct: 302 WKRGNLFDKNFVLFMFKAISDASVCYVKSVEKKRVEKIRPLPLRTVELQKACASIFKISS 361
Query: 314 HHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKP 373
H M +AE+LY GY+SYPRTET + F V ++ + + ++ +++ + + P
Sbjct: 362 HEVMNVAEKLYNNGYISYPRTETDSFSPGFKFVDIINELSKDNHFTNYCKKLENGMMCNP 421
Query: 374 RKGKDVG-DHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLC----GDLVYTQKVAKF 428
RKGK+ H PI P L + + L G ++Y+Y+ R F+G + G + + +F
Sbjct: 422 RKGKNNDMAHAPIYP--LKSGSNLSGVERKIYEYVSRRFLGCISKNATGFETKVEIIIRF 479
Query: 429 SVADEMFTMEAKYLLHP 445
+ F + ++HP
Sbjct: 480 KNRGDFFFCNSNSIIHP 496
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Query: 479 ERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
E KT PPDYLTE +LI+LM+K+GIGTDA+I HI+ I RNY G+ + T+LG L
Sbjct: 719 EGKTKPPDYLTEPDLINLMDKNGIGTDATIAEHIHKIQDRNYCK-KKGKFFIATNLGKGL 777
Query: 539 VHGYQKIDR-ELVEPTMRSA 557
+ G+++I ++ P +RS+
Sbjct: 778 ILGFRQIGLIKMTNPKLRSS 797
>gi|251798806|ref|YP_003013537.1| DNA topoisomerase III [Paenibacillus sp. JDR-2]
gi|247546432|gb|ACT03451.1| DNA topoisomerase III [Paenibacillus sp. JDR-2]
Length = 719
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 148/555 (26%), Positives = 235/555 (42%), Gaps = 88/555 (15%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTE---KREATPKLKLPAFLANE 103
+ +T GH++ L D+ KY W+ ++ L L RE + + K A L
Sbjct: 35 YVVTWALGHLVTLAEPEDYDPKYKTWN-LEDLPLLPGKMNLKVMRETSHQYKAVAQLCKR 93
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF-----SAITDKDIKA 158
D L++ D +EGE + +ME V WR F S+ TDK IK
Sbjct: 94 P-DIGELIIATDAGREGELVARWIMELVH-----------WRKPFKRLWISSQTDKAIKD 141
Query: 159 AMWNLVKP----NIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQ 214
+ +KP N A +V R E D IG TR T + + ++ G Q
Sbjct: 142 G-FKALKPGQQYNNLYASAV-CRAEADWLIGLNVTRALTVKYNAQ--------LAAGRVQ 191
Query: 215 TPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSR-----GHIFDKSTCNVFF 269
TPTLG ++R +I F+ +PYW + L A W + G ++D+S
Sbjct: 192 TPTLGALIDREKEINQFQSQPYWTVSAELG----AFQALWRQNDNHDGRVWDRSEAEAVI 247
Query: 270 KAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GY 328
++ K V ++++ KS+ PQA + EL R A+ LG + ++LY Q
Sbjct: 248 ARLQG-KSAKVDKLRTTQKSEPHPQAFDLTELQREANKRLGFSAKMTSNVLQKLYEQHKL 306
Query: 329 VSYPRTETTQYPENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDH 382
V+YPRT++ + D+V L+ + S G + R++L ++ ++ D V DH
Sbjct: 307 VTYPRTDSRYL--SSDIVPTLKGRLESVAVGPYAPLARKLLRGQLTVTKRFVDDSKVSDH 364
Query: 383 PPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKY 441
I PT + + L D +LYD IVR FI Y + +V + + K
Sbjct: 365 HAIIPTDEYVNLSALSNDERKLYDLIVRRFIALFYPPYTYDETSVVLTVGQDKLYAKGKV 424
Query: 442 LLHPGFTGVMTWSAMK--------------------NESIPDFKPGDLIPIQSVKMVERK 481
G+ + S + + +P+ G + ++ ++ E +
Sbjct: 425 QKDIGWKELYGGSDARFTADEDDEEENGRGEDKSTPEQLLPELVQGQAVQVKQSRLKELR 484
Query: 482 TTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHG 541
T PP TE+ L+S MEKHG+GT A+ I + + + T RLVPTS G L+
Sbjct: 485 TLPPARYTEASLLSKMEKHGLGTPATRADIIEKLLSTDTIERTQN-RLVPTSKGKQLI-- 541
Query: 542 YQKIDRELVEPTMRS 556
ELV +RS
Sbjct: 542 ------ELVVDELRS 550
>gi|402813632|ref|ZP_10863227.1| DNA topoisomerase 3 [Paenibacillus alvei DSM 29]
gi|402509575|gb|EJW20095.1| DNA topoisomerase 3 [Paenibacillus alvei DSM 29]
Length = 724
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 141/535 (26%), Positives = 223/535 (41%), Gaps = 73/535 (13%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEK-----REATPKLKLPAFLA 101
+ +T GH++GL D+ KY W+ D L P + RE++ + K+ L
Sbjct: 42 YVVTWALGHLVGLAEPEDYDKKYQTWNLED---LPMIPQKMKLKVLRESSHQFKVVQQLC 98
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAM 160
+D + L++ D +EGE + VME V+ N P + +W S+ TDK IK
Sbjct: 99 KR-QDIKDLIVATDAAREGELLARWVMEMVK----WNKPFRRLW---ISSQTDKAIKEGF 150
Query: 161 WNLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTL 218
L N F+ S R E D IG TR T F+ + +S G QTPTL
Sbjct: 151 RQLKPGNQFDRLYESARCRAEADWLIGLNVTRALTCKFE--------TPLSAGRVQTPTL 202
Query: 219 GFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW----SRGHIFDKSTCNVFFKAVEK 274
+ R +I+ F+ E Y T++ + W G IF++ ++
Sbjct: 203 AMMMSREQEIKNFQSEEY----DTIHADCGGFEAVWRGANGDGRIFNEQAAQAIAAKLQN 258
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPR 333
+ V D++ STK++ P A + EL R A+ G + +RLY Q V+YPR
Sbjct: 259 GRQAIVADLKKSTKNEPHPLAYDLTELQRDANRRYGFSAKQTSNVLQRLYEQHKLVTYPR 318
Query: 334 TETTQYPENFDLVAVLRQQESSPDWGDHVREVL-----SNGISKPRKGKD---VGDHPPI 385
T++ + D+V L+++ S+ G + S +S ++ D V DH I
Sbjct: 319 TDSRYL--SSDMVGTLKERLSAMAVGPYAAAAKLLLRGSRNLSVTKRIVDDSKVTDHHAI 376
Query: 386 TPTKLATR-TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLH 444
PT R + L D +LYD I R +I Y Q + E + + +L
Sbjct: 377 IPTDEPLRLSALSTDERKLYDLIARRYIALFLPPAKYEQVAVTIELGGERLYAKGRTMLD 436
Query: 445 PGFTGVM-------------------TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPP 485
G+ W+ K + +P GD + ++ V +T PP
Sbjct: 437 IGWRQAYEGDWDDTSSNEDQEEDHQSAWN--KEQRLPSLTNGDKLAVKRVITRRDRTKPP 494
Query: 486 DYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVH 540
TE+ L++ MEKHG+GT A+ I + + + G L PT G L+
Sbjct: 495 ARYTEATLLTQMEKHGLGTPATRADIIEKLVSSDTIE-RQGASLQPTGKGEQLIR 548
>gi|310640308|ref|YP_003945066.1| DNA topoisomerase [Paenibacillus polymyxa SC2]
gi|386039469|ref|YP_005958423.1| DNA topoisomerase III [Paenibacillus polymyxa M1]
gi|309245258|gb|ADO54825.1| DNA topoisomerase [Paenibacillus polymyxa SC2]
gi|343095507|emb|CCC83716.1| DNA topoisomerase III [Paenibacillus polymyxa M1]
Length = 711
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 150/540 (27%), Positives = 226/540 (41%), Gaps = 65/540 (12%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEK--REATPKLKLPAFLANEA 104
+ +T GH++GL D+ SKY W+ D L K RE+ + K L
Sbjct: 35 YVVTWALGHLVGLAEPEDYDSKYATWNLEDLPILPKNSKLKVLRESNHQFKAVQQLMKR- 93
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLV 164
+D L++ D +EGE + +++ N K R S+ TDK IKA L+
Sbjct: 94 QDIGELIVATDAAREGELLARWIIQMA------NWKKPFRRLWISSQTDKAIKAGFAKLL 147
Query: 165 KPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
F+ S R E D IG TR T + + +S G QTPTLG +
Sbjct: 148 PGQQFDRLYESARCRAEADWMIGLNVTRALTVRYNAQ--------LSAGRVQTPTLGMIM 199
Query: 223 ERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW----SRGHIFDKSTCNVFFKAVEKEKHV 278
ER +I F+ + Y TL + TW +FD++ +E K
Sbjct: 200 EREKEITQFRSQEY----DTLTADFGHFQATWRAENGDSRMFDRTQAETLRHRLEGAKG- 254
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETT 337
TVV V+ S K++ P A + EL R A+ G + +RLY Q V+YPRT++
Sbjct: 255 TVVSVKKSEKNEPHPLAYDLTELQRDANQRYGFSAKQTSNVLQRLYEQHKLVTYPRTDSR 314
Query: 338 QYPENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTKLA 391
D+V L+++ SS G + R +L N + ++ D V DH I PT+
Sbjct: 315 YL--TSDMVDSLKERLSSVAVGPYASLARPLLRNKLPITKRVVDDSKVTDHHAIIPTEQT 372
Query: 392 TR-TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
QL + +LYD I R FI Y V E F ++ + G+ V
Sbjct: 373 LLLNQLSPEERKLYDLIARRFISLFYPPARYDAVAVSVMVGQETFQVKGTTIKDSGWRAV 432
Query: 451 MTWS--AMKNESI------------PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISL 496
S + +E I P+ K GD + +Q + +T PP TE+ L++
Sbjct: 433 YDESHYELDDEEIDDRENNGRGVILPELKKGDSVQLQRCIVRAGRTMPPKRYTEAALLAQ 492
Query: 497 MEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
MEKHG+GT A+ I + + + G + PT G L+ EL P +R+
Sbjct: 493 MEKHGLGTPATRADLIEKLVSSDTIE-RQGNVMHPTGKGKQLI--------ELAAPQLRT 543
>gi|392395542|ref|YP_006432144.1| DNA topoisomerase III [Desulfitobacterium dehalogenans ATCC 51507]
gi|390526620|gb|AFM02351.1| DNA topoisomerase III [Desulfitobacterium dehalogenans ATCC 51507]
Length = 729
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 125/475 (26%), Positives = 204/475 (42%), Gaps = 63/475 (13%)
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
D + L++ D +EGE + ++ + I K +W S+ TDK I+ NL
Sbjct: 96 DVDELIIATDAGREGELVARWIIRKAGWKKPI---KRLW---ISSQTDKAIREGFSNLKP 149
Query: 166 PNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVE 223
+E+ + + R + D +G TR T + + +S G QTPTL VE
Sbjct: 150 GKAYESLYAAAECRAQADWYVGLNVTRALTCKYNAQ--------LSAGRVQTPTLALVVE 201
Query: 224 RHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-----SRGHIFDKSTCNVFFKAVEKEKHV 278
R +I+ F P+ YW T+N S++W + IFD+ + + K +
Sbjct: 202 REKEIQNFVPKGYW----TINARVKGFSLSWQDKSNGQSRIFDQKKAEQLVQKLRGHKGL 257
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETT 337
V +++ K + PQA + EL R A+ G I ++LY V+YPRT++
Sbjct: 258 -VAEIKKEAKKEQPPQAYDLTELQRDANRKYGFSAKQTSSIMQQLYEHHKLVTYPRTDSR 316
Query: 338 QYPENFDLVAVLRQQESS---PDWGDHVREVLSNGISKPRKGKD---VGDHPPITPTKLA 391
E D+V L ++ + + + R VL I+ ++ D V DH I PT+
Sbjct: 317 YLSE--DIVPTLPERLKTIAVGPYAESARRVLRKPITPTKRWVDNSKVTDHHAIIPTEQT 374
Query: 392 T-RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
+L + ++YD IVR FI L Y Q K + E F + K + G+ V
Sbjct: 375 VFLNKLSPEEVKIYDLIVRRFIAVLSPAFEYEQTTVKVEIQGEYFIAKGKIVKQKGWRSV 434
Query: 451 MTWSAMKNE---------SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK-- 499
+E ++PD +P I + +K++ KT PP TE+ L+S ME
Sbjct: 435 YEGRDAADEEADHEEQEQNLPDLQPKQSIEVLDLKLLPGKTKPPKRYTEATLLSAMEHPG 494
Query: 500 ---------------HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
G+GT A+ I + Y+ +G+ ++PTS GI L+
Sbjct: 495 QRVDDEALRETLEKTSGLGTPATRADIIEKLFSSFYME-RNGKEIIPTSKGIQLI 548
>gi|354585654|ref|ZP_09004487.1| DNA topoisomerase III [Paenibacillus lactis 154]
gi|353184667|gb|EHB50192.1| DNA topoisomerase III [Paenibacillus lactis 154]
Length = 712
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 146/538 (27%), Positives = 223/538 (41%), Gaps = 60/538 (11%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEK--REATPKLKLPAFLANEA 104
+ +T GH++GL D+ KY W D L K RE + + K L
Sbjct: 35 YVVTWALGHLIGLAEPEDYDKKYQTWALEDLPILPDSMRLKVLRETSHQYKNVQHLMKR- 93
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
+D L++ D +EGE + +++ + N P K +W S+ TDK IK +L
Sbjct: 94 QDIGELIIATDAAREGELLARWILKMAK----WNKPFKRLW---ISSQTDKAIKEGFASL 146
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
F+ S R E D +G TR T F + +S G QTPTLG
Sbjct: 147 KPGQQFDRLYESARCRAEADWMVGLNVTRALTTKFNAQ--------LSAGRVQTPTLGMI 198
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV 281
++R +I F+ + Y L + L + G +F+K + +E +V
Sbjct: 199 MDREKEIINFRSQEYETLQVDLGSFEASWRAAGGDGRLFEKERAAKLKQKLEGASG-KIV 257
Query: 282 DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETTQYP 340
V+ S K++ P A + EL R A+ G + +RLY Q V+YPRT++
Sbjct: 258 SVKKSEKNEPHPLAYDLTELQRDANRRFGFSAKQTSNVLQRLYEQHKLVTYPRTDSRYL- 316
Query: 341 ENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTKLATR- 393
D+V L+++ SS G + R +L +S ++ D V DH I PT+
Sbjct: 317 -TSDMVGTLKERLSSIAVGPYAALARPLLRKSLSPGKRVVDDSKVTDHHAIIPTEQTVLL 375
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT- 452
QL D +LYD IVR FI Y Q + E F + + G+ V
Sbjct: 376 NQLTADERKLYDLIVRRFISLFYPPARYDQVAVTVQIEGETFHAKGTTVKDSGWREVYGG 435
Query: 453 --------------WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
SA + +P+ K G + + + +T PP TE+ L+S ME
Sbjct: 436 DYDDDADGEDDDAQGSAPGGKLLPELKEGQPVKVARCILKPGRTQPPKRYTEAALLSQME 495
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
KHG+GT A+ I + + + G L PT G L+ ELV P +R+
Sbjct: 496 KHGLGTPATRADIIEKLVSSDTIE-RQGSSLHPTGKGKQLI--------ELVAPELRT 544
>gi|374582323|ref|ZP_09655417.1| DNA topoisomerase III [Desulfosporosinus youngiae DSM 17734]
gi|374418405|gb|EHQ90840.1| DNA topoisomerase III [Desulfosporosinus youngiae DSM 17734]
Length = 726
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 148/576 (25%), Positives = 249/576 (43%), Gaps = 90/576 (15%)
Query: 29 QRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLD----FTSKYNNWDKVDPLELFSCP 84
Q+ NG ++GP + +V++ + GH++ L + KY W K++ L +
Sbjct: 25 QKGNGC-----FIGPKY--VVVWAL----GHLVTLADPELYDEKYKTW-KIEDLPMLPPK 72
Query: 85 TEKREATPKLKLPAFLANEAKDCEF--LVLWLDCDKEGENICFEVMEAVRHQININSPKT 142
E K + N K+ E L++ D +EGE + +++ + K
Sbjct: 73 MELVVMKETAKQFGVVKNLMKNPEMADLIIATDAGREGELVARWIIKKAGWR------KP 126
Query: 143 VWRARFSAITDKDIKAAMWNLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKY 200
V R S++T++ IK +L +E + + R E D +G TR T + +
Sbjct: 127 VKRLWISSLTERAIKEGFNHLKPGKDYETLYAAAECRAEADWLVGLNVTRALTCKYNAQ- 185
Query: 201 GDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW----SR 256
+S G QTPTL VER ++I+ F P+ YW ++N+ V++ W +
Sbjct: 186 -------LSAGRVQTPTLAMVVERENEIKQFVPKDYW----SINVLAKGVTLRWQDHSGQ 234
Query: 257 GHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHA 316
IFDK + + V++V+ K + P A + EL R A+ G
Sbjct: 235 TRIFDKQKAEALAAKLTGQTG-EVIEVKKEAKKELPPLAYDLTELQRDANRKYGFSAKTT 293
Query: 317 MQIAERLY-TQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHV---REVLSNGISK 372
+ ++LY V+YPRT++ E D+V L ++ S G +V R +L N ++
Sbjct: 294 SSVMQQLYENHKLVTYPRTDSRYISE--DIVPTLPERLKSIALGPYVDLARGILRNKLNI 351
Query: 373 PRKGKD---VGDHPPITPTKL-ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKF 428
++ D V DH I PT+ + ++L + ++YD IVR F+ L Y Q K
Sbjct: 352 TKRFADSSKVSDHHAIIPTEQPPSLSRLSSEELKVYDLIVRRFLAVLSPAFEYEQTSIKV 411
Query: 429 SVADEMFTMEAKYLLHPGFTGVMTWSAM-----------KNESIPDFKPGDLIPIQSVKM 477
S+ E+ T + K + G+ V +++P+ + G+L+ VK+
Sbjct: 412 SLKGEIVTAKGKIVKLKGWRKVYEGQGHLDDQAENGDGDSEQTLPEIRKGELLNDLRVKL 471
Query: 478 VERKTTPPDYLTESELISLME-----------------KHGIGTDASIPVHINNICQRNY 520
V KT PP TE+ L+S ME HG+GT A+ I + Y
Sbjct: 472 VPGKTKPPARHTEATLLSAMEHPGKLIGDEKLREAMEQSHGLGTPATRAEIIEKLFNSFY 531
Query: 521 VTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
+ G+ ++PTS GI LV LV P ++S
Sbjct: 532 MN-RQGKEIIPTSKGIQLVG--------LVPPELKS 558
>gi|319653386|ref|ZP_08007486.1| DNA topoisomerase [Bacillus sp. 2_A_57_CT2]
gi|317394870|gb|EFV75608.1| DNA topoisomerase [Bacillus sp. 2_A_57_CT2]
Length = 697
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 134/511 (26%), Positives = 223/511 (43%), Gaps = 50/511 (9%)
Query: 53 MTSVCGHIMGLD----FTSKYNNWDKVDPLELFSCPTEK-----REATPKLKLPAFLANE 103
+T GH++ L + +KY NW+ D L P + ++ + + K LA
Sbjct: 37 VTWALGHLIELKMPEHYDTKYKNWNLED---LPIIPDQMGLKVMKQTSHQYKAIENLAKR 93
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
KD + +++ D +EGE + ++E +R + KT+ R S++TD+ I+ NL
Sbjct: 94 -KDIKEIIIATDAGREGELVARWILEKIRWR------KTIKRLWISSVTDRAIRDGFQNL 146
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
FE S R E D IG TR T KY D +S G QTPTL
Sbjct: 147 KPGKQFEDLYESAVCRAEADWLIGLNVTRALT----TKYKDP----LSAGRVQTPTLALV 198
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRG---HIFDKSTCNVFFKAVEKEKHV 278
+ER I+ F P+ YW T+ + W + IF K + V+ +K V
Sbjct: 199 MEREALIQKFVPKEYW----TIRSQIAPLQADWEKNGEKRIFSKEAADEVLSKVKGQKAV 254
Query: 279 TVVDVQSSTKSKTKPQAL--NTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTE 335
++ K KT+PQ L + EL R A+ G + ++LY Q V+YPRT+
Sbjct: 255 IHSIIR---KEKTEPQPLPYDLTELQRDANKRYGFSAKKTSNVLQKLYEQHKLVTYPRTD 311
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSNG----ISKPRKGKDVGDHPPITPTKLA 391
+ ++ + + R + + D V+ +L+N + + V DH I PT+
Sbjct: 312 SRYLTKDMEATMMDRLHGIAASYKDEVKPILANQGKVLAKRVFNNEKVTDHHAIIPTEER 371
Query: 392 TR-TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
+ L D +LY+ I+R F+ Y A V E FT ++ G+ V
Sbjct: 372 VHLSDLSADERKLYELILRRFLAIFHNPYKYETIHASIEVNSETFTARETAVIDLGYRKV 431
Query: 451 MTWSAMK--NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASI 508
S + +S+ + G +Q+ ++ + T PP +E+++++ MEK+ +GT A+
Sbjct: 432 ERSSDEETGKQSLKNISKGQSFTVQTAELSAKLTEPPLRYSEADILTQMEKYSLGTPATR 491
Query: 509 PVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
I + + +G RL PT G L+
Sbjct: 492 AEIIERLLDTEAIERQNG-RLFPTKKGKQLM 521
>gi|126466161|ref|YP_001041270.1| DNA topoisomerase I [Staphylothermus marinus F1]
gi|126014984|gb|ABN70362.1| DNA topoisomerase I [Staphylothermus marinus F1]
Length = 723
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 118/505 (23%), Positives = 218/505 (43%), Gaps = 41/505 (8%)
Query: 53 MTSVCGHIMGLD--------FTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEA 104
+ S GH+ GL F ++ ++DP +A K L+
Sbjct: 98 VASAAGHLYGLHTDQYGYPVFKYEWKPLYQIDP-----------KAKHTEKFIMVLSKLC 146
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLV 164
+ ++ V D D EG I + ++ + + K++ RA+FS++T ++++ + L
Sbjct: 147 SNADYYVNACDYDIEGSVIGYLII-----YFHGDLEKSL-RAKFSSLTIEELRESFRKLT 200
Query: 165 KPNIFEARSVDARQELDLRIGCAFTRY---QTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
+ + R ELD G +R K GK ++S G QTPTL +
Sbjct: 201 SLDWEMIEAGLCRHELDWIWGINISRALMSSVKIASGK-----RVILSAGRVQTPTLRYV 255
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV 281
VE+ + R F P P + L + + N + V + + K +++ ++ V
Sbjct: 256 VEKDIERRLFIPLPQYSLSINIFKNNYEIHVEYKGKSVETKKNAKEIIDEIKRTGYLIVK 315
Query: 282 DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPE 341
+ + P A N +L A+ G P+ IAE+LY +SYPRT + + P
Sbjct: 316 KYEEKIYTLNPPPAFNLGDLQEEAARIYGFSPYKTQSIAEKLYLDALISYPRTNSQKLPP 375
Query: 342 NFDLVAVLRQQESSPDWGDHVREVL--SNGISKPRKG-KDVGDHPPITPTKLATRTQLDG 398
+ A++ + ++ + V +L + G+ KP +G KD HP I PT + + L
Sbjct: 376 TLNYKAIMNKLSRINNYKELVSNLLVETKGVLKPVQGSKDDPAHPAIYPTGVKPK-DLGK 434
Query: 399 DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADE---MFTMEAKYLLHPGFTGVMTWSA 455
D W++YD IVR F+ + ++ + +F + +L G+ +S
Sbjct: 435 DEWKIYDLIVRRFLAAFASKARISHRIVYLEYPKDPSMVFQASGQKILDLGWLRYYPFSK 494
Query: 456 MKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNI 515
+ +P F+ G+ + I + + T PP+ + + +++ ME GIGT+A+ I +
Sbjct: 495 PEERFLPKFQYGEKVKIVKASIRKTYTKPPEKINKIKILRWMENVGIGTEATRARIIEIL 554
Query: 516 CQRNYVTVTSGRRLVPTSLGIVLVH 540
R Y+ G R+ T LG+ ++
Sbjct: 555 FSRYYLRSVGG-RVEATDLGLGIIE 578
>gi|376262438|ref|YP_005149158.1| DNA topoisomerase III [Clostridium sp. BNL1100]
gi|373946432|gb|AEY67353.1| DNA topoisomerase III [Clostridium sp. BNL1100]
Length = 722
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 151/580 (26%), Positives = 242/580 (41%), Gaps = 84/580 (14%)
Query: 8 LVPASEIKLARPSLISLLTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLD--- 64
LV A + +AR L +L Q NG +++ +T GH++ L
Sbjct: 5 LVIAEKPSVAR-DLAKVLNCGQNANGYIMGKKYI-----------VTWALGHLVTLADPE 52
Query: 65 -FTSKYNNWDKVDPLELFSCPTEK---REATPKLKLPAFLANEAKDCEFLVLWLDCDKEG 120
+ +KY W+ ++ L + E ++ + + L N A D + LV+ D +EG
Sbjct: 53 AYGNKYKTWN-LEDLPMLPNKMELVVIKQTAKQYGVVRGLLNRA-DVDELVIATDSGREG 110
Query: 121 ENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA--RSVDARQ 178
E + ++ + K + R S+ TDK IK L ++ S +R
Sbjct: 111 ELVARWII------MKAGFKKPIKRLWISSQTDKAIKEGFAKLRPSKEYDNLYYSAQSRA 164
Query: 179 ELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
E D +G TR T + + +S G QTPTL VER ++IR F+P+ YW
Sbjct: 165 EADWLVGLNVTRALTCKYNAQ--------LSAGRVQTPTLAMIVEREEEIRKFRPKDYWT 216
Query: 239 LDLTLNLNGVAVSVTWSRG-----HIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKP 293
+ N SV W G F+K + + + VV+V+ TK + P
Sbjct: 217 ISAQFN----GFSVQWQDGRTNQTRTFNKEEADGIVAKITGQIG-EVVEVKKETKKELPP 271
Query: 294 QALNTVELMRVASSGLGMGPHHAMQIAERLY-TQGYVSYPRTETTQYPENFDLVAVLRQQ 352
A + EL R A+ + I +RLY + V+YPRT++ + D+V L ++
Sbjct: 272 LAYDLTELQRDANKKFSYSAKQTLNIMQRLYESHKLVTYPRTDSRYITD--DIVPTLNER 329
Query: 353 ESSPDWGDH---VREVLSNGISKPRKGKD---VGDHPPITPT-KLATRTQLDGDAWRLYD 405
S G + V+ V+ N IS ++ D V DH I PT + + L+ + +YD
Sbjct: 330 LKSIAVGPYAKLVQGVMRNKISVTKRFVDNSKVTDHHAIIPTEQFVDLSSLNSEERNIYD 389
Query: 406 YIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV---------MTWSAM 456
IV+ FI L Y Q K +VA E F + K + G+ V +
Sbjct: 390 LIVKRFIAVLSQPFEYEQTTVKLNVAGESFYAKGKIVRSSGWKTVYDGFGKLDEDSDEDD 449
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME-----------------K 499
++S+PD + G + + K + KT PP TE+ L+S ME
Sbjct: 450 NDQSLPDIQKGHKAKVVAPKAINGKTKPPARYTEATLLSAMEHPGKFVDNKALKEALEST 509
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
G+GT A+ I + Y+ G+ + PTS G L+
Sbjct: 510 SGLGTPATRADIIEKLFNTFYIE-RRGKEIYPTSKGTQLI 548
>gi|340624276|ref|YP_004742729.1| DNA topoisomerase I [Methanococcus maripaludis X1]
gi|339904544|gb|AEK19986.1| DNA topoisomerase I [Methanococcus maripaludis X1]
Length = 823
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 123/461 (26%), Positives = 206/461 (44%), Gaps = 26/461 (5%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININ-SPKTVWRARFSAITDKDIKA 158
L +KD + D D EGE I + H +N + K R RFS++T K+I
Sbjct: 92 LKKVSKDANKFYVATDWDIEGELIGY-------HALNFSCGQKNAHRLRFSSLTKKEILK 144
Query: 159 AMWNLVKPNIFEARSVDA---RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQT 215
A N PN + VDA R ++D G +R Q +S G Q
Sbjct: 145 AYEN---PNEIDFGLVDAGDSRHKIDWYFGINVSR---ALMQAVSSVKRWKTLSTGRVQG 198
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKE 275
P L F V++ +IR F P PYW+L+ L+ + +AV +D+ N ++ V+ +
Sbjct: 199 PALAFLVDKELEIRNFVPTPYWVLEALLDNDLIAVH---ELEKFWDEEQANKAYEKVKGQ 255
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
K TV DV+ S K+ + L R A + P ++A++LY +GY SYPRT
Sbjct: 256 KQATVSDVKKSMKTIPPNPPFDLGALQREAHNMFRFSPKKTQEVAQKLYEKGYCSYPRTS 315
Query: 336 TTQYPENFDLV-AVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATR 393
+ + P++ + VL+ + ++ ++ +L N KP GK D HP + + +
Sbjct: 316 SQKLPDDKAYMDEVLKNLSKNKNYKPYIETIL-NENRKPISGKKDDPAHPAVHAVDVP-K 373
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
+L D +LY+ I R I + + E F + + G+ + +
Sbjct: 374 EKLPDDELKLYELIARRTIALYWDNAKREYSKINLDINGETFKLSGSRTVEEGWHEIYYY 433
Query: 454 SAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
+ +P+ K D+I + ++ ++T PP T + +I +EK +GT A+ +
Sbjct: 434 TKFDEVELPELKKNDVINVNNINFEAKETKPPKRYTMASIIKELEKRKLGTKATRADILE 493
Query: 514 NICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
+ +R YV + G L T LGI + +K E+VE T+
Sbjct: 494 KLTKRGYV-IEDG-SLTVTDLGIGVTETLRKYCPEIVEETL 532
>gi|320101228|ref|YP_004176820.1| DNA topoisomerase I [Desulfurococcus mucosus DSM 2162]
gi|319753580|gb|ADV65338.1| DNA topoisomerase I [Desulfurococcus mucosus DSM 2162]
Length = 691
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 136/530 (25%), Positives = 229/530 (43%), Gaps = 24/530 (4%)
Query: 3 LRVKKLVPASEIKLARPSLISLLTP--LQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHI 60
L+ + LV A + K AR + L+P + R G+ V+E +G ++L + S GH+
Sbjct: 18 LKGRVLVIAEKPKAAR-KIAEALSPGYVTRRIGSIPVYEINA--YGSMIL--VASSVGHL 72
Query: 61 MGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEG 120
L+ K + + KR A L++ L + ++ V D D EG
Sbjct: 73 YELNTGVKGYPVYSYEWVPSHLVNPGKRHAREYLEV---LKKLCRGVDYYVNACDYDIEG 129
Query: 121 ENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQEL 180
I + ++ + N + K + RA+FS++T ++++ A NL K + + R EL
Sbjct: 130 SVIGYLII-----KFNGDEEKAL-RAKFSSLTREELRQAFNNLAKLDYEMIEAGLCRHEL 183
Query: 181 DLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 240
D G +R K + G ++S G QTPTL + VE+ + F P P + +
Sbjct: 184 DWLWGINVSRALMKAVEDATGR--RIVLSAGRVQTPTLKYVVEKTVERNLFIPLPQYRVT 241
Query: 241 LTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVE 300
+T NG V + ++ + + V ++ ++ V +V+ T P N +
Sbjct: 242 VTAERNGEEVVLEYAGNPVEKHGEARSIVERVRRQGYLIVEEVEGKTYVLKPPPPFNLGD 301
Query: 301 LMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGD 360
L A+ G P IAE+LY +SYPRT + + P + +L S +
Sbjct: 302 LQEEAARIYGFSPAKTQAIAEQLYLDALISYPRTNSQKLPPTLNYRGILDNLASIGKYSG 361
Query: 361 HVREVLSN--GISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
V +LS G+ KP +G K+ HP I PT + D + W +YD IVR F+
Sbjct: 362 LVASLLSETRGVLKPVEGEKEDPAHPAIYPTGMKPGGLTD-EQWAVYDLIVRRFLAVFAQ 420
Query: 418 DLVYTQKVAKFSV--ADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSV 475
T K D +F + + G+ + K+ P GD + + V
Sbjct: 421 PARLTHYTVKAVTPSRDAVFKASWQRVEEQGWMKYYGFHTYKSSRAPGLVKGDKLGVVKV 480
Query: 476 KMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS 525
M E T PP L++ +++ ME IGT+A+ I + +R Y+ + S
Sbjct: 481 SMRESYTKPPKRLSKIDVLRWMESVEIGTEATRAQIIEKLFERKYLFLES 530
>gi|45358519|ref|NP_988076.1| DNA topoisomerase I [Methanococcus maripaludis S2]
gi|44921277|emb|CAF30512.1| DNA topoisomerase I [Methanococcus maripaludis S2]
Length = 823
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 123/461 (26%), Positives = 206/461 (44%), Gaps = 26/461 (5%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININ-SPKTVWRARFSAITDKDIKA 158
L +KD + D D EGE I + H +N + K R RFS++T K+I
Sbjct: 92 LKKVSKDANKFYVATDWDIEGELIGY-------HALNFSCGQKNAHRLRFSSLTKKEILK 144
Query: 159 AMWNLVKPNIFEARSVDA---RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQT 215
A N PN + VDA R ++D G +R Q +S G Q
Sbjct: 145 AYEN---PNEIDFGLVDAGDSRHKIDWYFGINVSR---ALMQAVSSVKRWKTLSTGRVQG 198
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKE 275
P L F V++ +IR F P PYW+L+ L+ + +AV +D+ N ++ V+ +
Sbjct: 199 PALAFLVDKELEIRNFVPTPYWVLEALLDNDLIAVH---ELEKFWDEEQANKAYEKVKGQ 255
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
K TV DV+ S K+ + L R A + P ++A++LY +GY SYPRT
Sbjct: 256 KQATVSDVKKSMKTIPPNPPFDLGALQREAHNMFRFSPKKTQEVAQKLYEKGYCSYPRTS 315
Query: 336 TTQYPENFDLV-AVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATR 393
+ + P++ + VL+ + ++ ++ +L N KP GK D HP + + +
Sbjct: 316 SQKLPDDKAYMDEVLKNLSKNKNYKPYIETIL-NENRKPISGKNDDPAHPAVHAVDVP-K 373
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
+L D +LY+ I R I + + E F + + G+ + +
Sbjct: 374 EKLPDDELKLYELIARRTIALYWDNAKREYSKINLDINGETFKLSGSRTVEEGWHEIYYY 433
Query: 454 SAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHIN 513
+ +P+ K D+I + ++ ++T PP T + +I +EK +GT A+ +
Sbjct: 434 TKFDEVELPELKKNDVINVNNINFEAKETKPPKRYTMASIIKELEKRKLGTKATRADILE 493
Query: 514 NICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
+ +R YV + G L T LGI + +K E+VE T+
Sbjct: 494 KLTKRGYV-IEDG-SLTVTDLGIGVTETLRKYCPEIVEETL 532
>gi|325290135|ref|YP_004266316.1| DNA topoisomerase III [Syntrophobotulus glycolicus DSM 8271]
gi|324965536|gb|ADY56315.1| DNA topoisomerase III [Syntrophobotulus glycolicus DSM 8271]
Length = 725
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 141/554 (25%), Positives = 239/554 (43%), Gaps = 78/554 (14%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAK- 105
+ +T GH++ L + +Y W K+D L + E K + + N K
Sbjct: 36 YLVTWALGHLVTLADPEKYDQRYKTW-KMDDLPMLPEQMELVVIKETSKQFSVIKNLMKM 94
Query: 106 -DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLV 164
D + L++ D +EGE + +++ + I K +W S+ T++ IK L
Sbjct: 95 PDLDELIIATDAGREGELVARWIIKKAGWRKPI---KRLW---ISSQTERAIKEGFAALK 148
Query: 165 KPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
++ S + R + D IG TR T F + +S G QTPTL V
Sbjct: 149 PAKEYDHLYASAECRAQADWLIGLNVTRALTCKFSAQ--------LSAGRVQTPTLAMVV 200
Query: 223 ERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-----SRGHIFDKSTCNVFFKAVEKEKH 277
ER +I++F P+ +W T+ S+TW + IFD+S + K +
Sbjct: 201 EREKQIKSFVPKEFW----TIQAFTKGFSMTWHDKTNGQSRIFDQSKADQMIKKISGH-D 255
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT-QGYVSYPRTET 336
+ +++ +K + P A + EL R A+ G + ++LY V+YPRT++
Sbjct: 256 AEITEIKKESKKELPPLAYDLTELQRDANRKYGFSAKTTSSVMQQLYEYHKIVTYPRTDS 315
Query: 337 TQYPENFDLVAVLRQQESSPDWGDHVR---EVLSNGISKPRKGKD---VGDHPPITPTKL 390
E D+V+ L ++ +S G + + ++L N I+ ++ D V DH I PT+
Sbjct: 316 RYITE--DIVSTLPERLNSIAVGPYAQFAAKILKNKITTTKRFVDQSKVSDHHAIIPTEQ 373
Query: 391 ATRTQ-LDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG--- 446
Q L + +++YD IV+ F+ L Y Q K + E+F ++ K + G
Sbjct: 374 PVHLQKLSNEEYKIYDLIVKRFLAVLSKPFEYEQTTVKADIRGELFEVKGKIVKQNGWKE 433
Query: 447 -FTGVMTWSAMKNE-----SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK- 499
+ G W + + ++PD G+ IPI VK KT PP TE+ L++ ME
Sbjct: 434 VYQGTGNWEEEQEDEEREQTLPDLHKGERIPILEVKTKAGKTKPPARYTEATLLTAMEHP 493
Query: 500 ----------------HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQ 543
G+GT A+ I + Y+ +G+ + PTS G+ L+
Sbjct: 494 GKNIENEKLREAVKQTGGLGTPATRAEIIEKLFSSFYLE-RNGKEIFPTSKGLQLI---- 548
Query: 544 KIDRELVEPTMRSA 557
ELV ++SA
Sbjct: 549 ----ELVPVDLKSA 558
>gi|392959231|ref|ZP_10324715.1| DNA topoisomerase III [Pelosinus fermentans DSM 17108]
gi|421052905|ref|ZP_15515889.1| DNA topoisomerase III [Pelosinus fermentans B4]
gi|421059951|ref|ZP_15522485.1| DNA topoisomerase III [Pelosinus fermentans B3]
gi|421063262|ref|ZP_15525259.1| DNA topoisomerase III [Pelosinus fermentans A12]
gi|421070141|ref|ZP_15531277.1| DNA topoisomerase III [Pelosinus fermentans A11]
gi|392442652|gb|EIW20229.1| DNA topoisomerase III [Pelosinus fermentans B4]
gi|392448752|gb|EIW25933.1| DNA topoisomerase III [Pelosinus fermentans A11]
gi|392456614|gb|EIW33356.1| DNA topoisomerase III [Pelosinus fermentans DSM 17108]
gi|392458013|gb|EIW34605.1| DNA topoisomerase III [Pelosinus fermentans B3]
gi|392463144|gb|EIW39128.1| DNA topoisomerase III [Pelosinus fermentans A12]
Length = 730
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 185/419 (44%), Gaps = 47/419 (11%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD +V+ D +EGE + ++E + +IN P K +W S++TDK IK L
Sbjct: 95 KDVSEIVIATDAGREGELVARWIIE----KAHINKPIKRLW---ISSVTDKAIKEGFSKL 147
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
+E+ S AR E+D +G TR T + + +S G QTPTL
Sbjct: 148 RPGKEYESLYASAVARAEVDWLVGINATRALTCKYNAQ--------LSCGRVQTPTLAII 199
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWS-----RGHIFDKSTCNVFFKAVEKEK 276
R ++I+TFKP+ Y+ + T + + W FDKS C V K K
Sbjct: 200 AAREEEIKTFKPKEYYGISAT---GSNHLKLIWQDKNTKNTRTFDKSVCEALLNTV-KNK 255
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTE 335
+ VV++ + K K PQ + EL R + G P I +RLY V +YPRT+
Sbjct: 256 NAEVVEIDKAYKKKFSPQLYDLTELQRDGNRLFGFSPKETTSIMQRLYENYKVLTYPRTD 315
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKD-------VGDHPPITPT 388
+ + D+V L+ + + G + ++ S + KP KG V DH I PT
Sbjct: 316 SRYI--STDIVDTLKDRVKACSVGPY-SQIASAILKKPIKGNSSFVDNNKVSDHHAIIPT 372
Query: 389 -KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
++ + + ++YD +V+ F+ L Y Q K + E+F K ++ G+
Sbjct: 373 EQMPMLSSMSDMERKIYDLVVKRFLAALYPPFEYEQITLKAKIGGEVFIATGKTIIAQGW 432
Query: 448 TGVMTWSAMKNES--------IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
+ + +E+ +P GD I I +V + + +T PP E L+S ME
Sbjct: 433 KAIYEHAGEDDEAKEDVVEQLLPKINRGDTISITNVSLTKGETKPPAPFNEGTLLSAME 491
>gi|354559090|ref|ZP_08978342.1| DNA topoisomerase III [Desulfitobacterium metallireducens DSM
15288]
gi|353544260|gb|EHC13715.1| DNA topoisomerase III [Desulfitobacterium metallireducens DSM
15288]
Length = 725
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 139/533 (26%), Positives = 221/533 (41%), Gaps = 67/533 (12%)
Query: 51 FKMTSVCGHIMGLD----FTSKYNNWDKVDPLELFSCPTEK---REATPKLKLPAFLANE 103
+ +T GH++ L + +Y W ++D L + E +E + + L +
Sbjct: 36 YIVTWALGHLVTLADPEAYDDRYKTW-RLDDLPMLPQKMELVVIKETSKQYAAVKHLLRQ 94
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
D + L++ D +EGE + ++ I K +W S+ TDK IK NL
Sbjct: 95 P-DIDELIIATDAGREGELVARWILAKGGWHKPI---KRLW---ISSQTDKAIKEGFRNL 147
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
+E+ + ++R E D +G TR T + + +S G QTPTL
Sbjct: 148 KPGQNYESLYDAAESRAEADWYVGLNVTRALTCKYNAQ--------LSAGRVQTPTLALI 199
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWS----RGHIFDKSTCNVFFKAVEKEKH 277
VER +I+ F P+ YW T+N S+ W + IFD V ++
Sbjct: 200 VEREKEIKKFVPKDYW----TINAYAKGFSLRWQDKKCQTRIFDNHQAEQLLAKVSGQEA 255
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTET 336
V ++DV+ K + P A + EL R A+ G I ++LY V+YPRT++
Sbjct: 256 V-IIDVKKEGKKELPPLAYDLTELQRDANRKYGYSAKKTSSIMQQLYEHYKIVTYPRTDS 314
Query: 337 TQYPENF--DLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKD---VGDHPPITPTKLA 391
E+ L LR P + + R +L IS ++ D V DH I PT+
Sbjct: 315 RHLTEDIVPTLPERLRTIAVGP-YANLARPILRTKISPTKRLVDNTKVSDHHAIIPTEEP 373
Query: 392 T-RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
+L + R+YD IVR F L Y Q + E+FT + K + G+
Sbjct: 374 VFLNKLSQEEARIYDLIVRRFFAVLSPAFEYEQTTVILEIKGEIFTAKGKNMKQKGWRNA 433
Query: 451 -------MTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK---- 499
+++PD K + + + S+K V KT PP TE+ L+S ME
Sbjct: 434 YEDLDSSEEEREETEQTLPDLKVKERLNLLSIKSVPGKTKPPKRYTEATLLSAMEHPGQK 493
Query: 500 -------------HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
G+GT A+ I + Y+ G+ ++PTS GI L+
Sbjct: 494 VEDESLREMLEKTSGLGTPATRADIIEKLFNSFYME-RQGKEIIPTSKGIQLI 545
>gi|261419915|ref|YP_003253597.1| DNA topoisomerase III [Geobacillus sp. Y412MC61]
gi|319766729|ref|YP_004132230.1| DNA topoisomerase III [Geobacillus sp. Y412MC52]
gi|261376372|gb|ACX79115.1| DNA topoisomerase III [Geobacillus sp. Y412MC61]
gi|317111595|gb|ADU94087.1| DNA topoisomerase III [Geobacillus sp. Y412MC52]
Length = 697
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 136/525 (25%), Positives = 225/525 (42%), Gaps = 48/525 (9%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEK-----REATPKLKLPAFLA 101
+ +T GH++ L D+ KY W D L P + R+ + + + LA
Sbjct: 35 YIVTWALGHLVELKMPEDYDRKYETWRLED---LPIIPKKMGLKVIRQTSHQFRAIERLA 91
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMW 161
D + +++ D +EGE + ++E I K +WR S+ TD+ I+
Sbjct: 92 KRP-DVKDVIIATDAGREGELVARWILEM------IGWTKPIWRLWISSQTDRAIRDGFR 144
Query: 162 NLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
L F+ +S R E D IG +R T KY D +S G QTPTL
Sbjct: 145 QLKPGAQFDRLYQSAVCRAEADWLIGLNVSRALTT----KYNDP----LSAGRVQTPTLA 196
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSR--GH-IFDKSTCNVFFKAVEKEK 276
+ER +I++F P PYW T+ +++ W R GH +FD+ ++ +
Sbjct: 197 MIIEREREIQSFVPVPYW----TIRAKIGSITAVWERHGGHRLFDQDEAKQLLARLDGQP 252
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTE 335
VV V+ KS+ P + EL R A+ G + + +RLY Q V+YPRT+
Sbjct: 253 -ARVVSVKRKRKSEPAPLPYDLTELQRDANKRFGFSAKKTLSVLQRLYEQHKLVTYPRTD 311
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPR----KGKDVGDHPPITPT-KL 390
+ P + + R + D + +L+ G +K V DH I PT +
Sbjct: 312 SRYLPSDMEATMTERLLAMKSGYEDVIAPLLAKGKAKAAKRVFNDDKVTDHHAIVPTDER 371
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
++L D +LYD I R F+ A F + EMF + +++ GF V
Sbjct: 372 LNLSRLSTDERKLYDLIARRFLALFFPPYESETTTAVFDIGGEMFVAKETAVVNFGFKAV 431
Query: 451 MTWSAMKNE-SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
+ + ++ G +P ++ + T PP +E++L++ MEK+G+GT A+
Sbjct: 432 LGKEETDAKPTLSHLAEGQTLPSVQLEREQSFTEPPARYSEADLLAQMEKYGLGTPATRA 491
Query: 510 VHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
I + + V G R PT G L+ + ++ EL P +
Sbjct: 492 DIIERLVETEVVERKDG-RFYPTKKGKQLI---ELVNEELKSPEL 532
>gi|308067536|ref|YP_003869141.1| topoisomerase IA [Paenibacillus polymyxa E681]
gi|305856815|gb|ADM68603.1| Topoisomerase IA [Paenibacillus polymyxa E681]
Length = 711
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 147/540 (27%), Positives = 226/540 (41%), Gaps = 65/540 (12%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEK--REATPKLKLPAFLANEA 104
+ +T GH++GL D+ SKY W+ D L K RE+ + K L
Sbjct: 35 YVVTWALGHLVGLAEPEDYDSKYATWNLEDLPILPKSSKLKVLRESNHQFKAVQQLMKRP 94
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLV 164
D L++ D +EGE + +++ N K R S+ TDK IKA L+
Sbjct: 95 -DIGELIVATDAAREGELLARWIIQMA------NWKKPFRRLWISSQTDKAIKAGFAKLL 147
Query: 165 KPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
F+ S R E D IG TR T + + +S G QTPTLG +
Sbjct: 148 PGQQFDRLYESARCRAEADWMIGLNVTRALTCRYNAQ--------LSAGRVQTPTLGMIM 199
Query: 223 ERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW----SRGHIFDKSTCNVFFKAVEKEKHV 278
ER +I F+ + Y TL + TW +FD++ + +E K
Sbjct: 200 EREKEITEFRSQEY----DTLTADFGDFQATWRAESGDSRMFDRTQAEALRRRLEGAKG- 254
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETT 337
TV V+ S K++ P A + EL R A+ G + +RLY Q V+YPRT++
Sbjct: 255 TVASVKKSEKNEPHPLAYDLTELQRDANQRYGFSAKQTSNLLQRLYEQHKLVTYPRTDSR 314
Query: 338 QYPENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTKLA 391
D+V L+++ SS G + R +L N + ++ D V DH I PT+
Sbjct: 315 YL--TSDMVDTLKERLSSVAVGPYASLARPLLRNNLPITKRIVDDSKVTDHHAIIPTEQT 372
Query: 392 TR-TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
QL + +LYD I R FI Y +V E F ++ + G+ V
Sbjct: 373 LLLNQLSPEERKLYDLIARRFISLFYPPARYDAVAVSVTVEQETFQVKGTTVKDSGWRAV 432
Query: 451 MTWSA--MKNES------------IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISL 496
+ M +E +P+ + GD + +Q + +T PP TE+ L++
Sbjct: 433 YDANHYDMDDEEAEDRENNGRGVILPELQKGDSVRLQRCLVRAGRTMPPKRYTEAALLAQ 492
Query: 497 MEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
MEKHG+GT A+ I + + + G + PT G L+ EL P +R+
Sbjct: 493 MEKHGLGTPATRADLIEKLVSSDTIE-RQGNVMHPTGKGKQLI--------ELAAPQLRT 543
>gi|374322196|ref|YP_005075325.1| DNA topoisomerase III [Paenibacillus terrae HPL-003]
gi|357201205|gb|AET59102.1| DNA topoisomerase III [Paenibacillus terrae HPL-003]
Length = 710
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 144/540 (26%), Positives = 227/540 (42%), Gaps = 66/540 (12%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEK---REATPKLKLPAFLANE 103
+ +T GH++GL D+ SKY W+ ++ L + T+ RE+ + K L
Sbjct: 35 YVVTWALGHLVGLAEPEDYDSKYTTWN-LEDLPILPKSTKLKVLRESNHQFKAVQQLMKR 93
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
+D L++ D +EGE + +++ N K R S+ TDK IK L
Sbjct: 94 -QDIGELIVATDAAREGELLARWIIQMA------NWKKPFRRLWISSQTDKAIKEGFAKL 146
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
+ F+ S R E D IG TR T + + +S G QTPTLG
Sbjct: 147 LPGQQFDRLYESARCRAEADWMIGLNVTRALTCRYNAQ--------LSAGRVQTPTLGMI 198
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW----SRGHIFDKSTCNVFFKAVEKEKH 277
+ER +I F+ + Y TL + TW +FD++ + +E K
Sbjct: 199 MEREKEITQFRSQEY----DTLTADFGDFQATWRAENGDSRMFDRTQAEALRRKLEGVKG 254
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTET 336
TV V+ S K++ P A + EL R A+ G + +RLY Q V+YPRT++
Sbjct: 255 -TVDSVKKSEKNEPHPLAYDLTELQRDANQRYGFSAKQTSNVLQRLYEQHKLVTYPRTDS 313
Query: 337 TQYPENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTKL 390
D+V L+++ +S G + R +L ++ ++ D V DH I PT+
Sbjct: 314 RYL--TSDMVDTLKERLNSVAVGPYASLARPLLRKSLTISKRIVDDSKVTDHHAIIPTEQ 371
Query: 391 ATR-TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTG 449
QL + +LYD I R FI Y +V E F ++ + G+
Sbjct: 372 TLLLNQLSPEERKLYDLIARRFISLFYPPARYDAVAVAVTVEQETFQVKGTTIKDSGWRA 431
Query: 450 VMTWSAMKNES-------------IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISL 496
V S + +P+ K GD + IQ + +T PP TE+ L++
Sbjct: 432 VYDGSLYDTDEEAEEREDNGSGVILPELKKGDSVRIQRCLVRAGRTMPPKRYTEAALLAQ 491
Query: 497 MEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
MEKHG+GT A+ I + + + G + PT G L+ EL P +R+
Sbjct: 492 MEKHGLGTPATRADLIEKLVSSDTIE-RQGNVMHPTGKGKQLI--------ELAAPQLRT 542
>gi|375008725|ref|YP_004982358.1| DNA topoisomerase [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359287574|gb|AEV19258.1| DNA topoisomerase [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 697
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 136/523 (26%), Positives = 224/523 (42%), Gaps = 48/523 (9%)
Query: 53 MTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEK-----REATPKLKLPAFLANE 103
+T GH++ L D+ KY W D L P + R+ + + + LA
Sbjct: 37 VTWALGHLVELKMPEDYDRKYETWRLED---LPIIPKKMGLKVIRQTSHQFRAIERLAKR 93
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
D + +++ D +EGE + ++E I K +WR S+ TD+ I+ L
Sbjct: 94 P-DVKDVIIATDAGREGELVARWILEM------IGWTKPIWRLWISSQTDRAIRDGFRQL 146
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
F+ +S R E D IG +R T KY D +S G QTPTL
Sbjct: 147 KPGAQFDRLYQSAVCRAEADWLIGLNVSRALTT----KYNDP----LSAGRVQTPTLAMI 198
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSR--GH-IFDKSTCNVFFKAVEKEKHV 278
+ER +I++F P PYW T+ +++ W R GH +FD+ ++ +
Sbjct: 199 IEREREIQSFVPVPYW----TIRAKIGSITAVWERHGGHRLFDQDEAKQLIARLDGQP-A 253
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETT 337
VV V+ KS+ P + EL R A+ G + + +RLY Q V+YPRT++
Sbjct: 254 RVVSVKRKRKSEPAPLPYDLTELQRDANKRFGFSAKKTLSVLQRLYEQHKLVTYPRTDSR 313
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPR----KGKDVGDHPPITPT-KLAT 392
P + + R + D + +L+ G +K V DH I PT +
Sbjct: 314 YLPSDMEATMTERLLAMKSGYEDVIAPLLAKGKAKAAKRVFNDDKVTDHHAIVPTDERLN 373
Query: 393 RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
++L D +LYD I R F+ A F + EMF + +++ GF V+
Sbjct: 374 LSRLSTDERKLYDLIARRFLALFFPPYESETTTAVFDIGGEMFVAKETAVVNFGFKAVLG 433
Query: 453 WSAMKNE-SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
+ ++ G +P ++ + T PP +E++L++ MEK+G+GT A+
Sbjct: 434 KEETDAKPTLSHLAEGQTLPSVQLEREQSFTEPPARYSEADLLAQMEKYGLGTPATRADI 493
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
I + + V G R PT G L+ + ++ EL P +
Sbjct: 494 IERLVETEVVERKDG-RFYPTKKGKQLI---ELVNEELKSPEL 532
>gi|326203772|ref|ZP_08193635.1| DNA topoisomerase III [Clostridium papyrosolvens DSM 2782]
gi|325986212|gb|EGD47045.1| DNA topoisomerase III [Clostridium papyrosolvens DSM 2782]
Length = 722
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 141/540 (26%), Positives = 226/540 (41%), Gaps = 78/540 (14%)
Query: 51 FKMTSVCGHIMGLD----FTSKYNNWDKVD------PLELFSCPTEKREATPKLKLPAFL 100
+ +T GH++ L + +KY W+ D +EL ++ + + L
Sbjct: 36 YIVTWALGHLVTLADPEAYGNKYKTWNLEDLPMVPNKMELVVI----KQTAKQYGVVRGL 91
Query: 101 ANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAM 160
N A D + LV+ D +EGE + ++ + K + R S+ TDK IK
Sbjct: 92 LNRA-DVDELVIATDSGREGELVARWII------MKAGFKKPIKRLWISSQTDKAIKEGF 144
Query: 161 WNLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTL 218
L ++ S +R E D +G TR T + + +S G QTPTL
Sbjct: 145 AKLRPSKEYDNLYYSAQSRAEADWLVGLNVTRALTCKYNAQ--------LSAGRVQTPTL 196
Query: 219 GFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-----SRGHIFDKSTCNVFFKAVE 273
VER ++IR F+P+ YW + N +V W ++ F+K + +
Sbjct: 197 AMIVEREEEIRKFRPKDYWTISAQFN----GFTVQWQDSKTNQTRTFNKEEADGIVAKIT 252
Query: 274 KEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY-TQGYVSYP 332
+ VV+V+ TK + P A + EL R A+ + I +RLY + V+YP
Sbjct: 253 GQTG-EVVEVKKETKKELPPLAYDLTELQRDANKKFSYSAKQTLNIMQRLYESHKLVTYP 311
Query: 333 RTETTQYPENFDLVAVLRQQESSPDWGDH---VREVLSNGISKPRKGKD---VGDHPPIT 386
RT++ + D+V L ++ S G + V+ V+ N IS ++ D V DH I
Sbjct: 312 RTDSRYITD--DIVPTLNERLKSVAVGPYAKLVQGVMRNKISVTKRFVDNSKVTDHHAII 369
Query: 387 PT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHP 445
PT + + L+ + +YD IV+ FI L Y Q K +VA E F + K +
Sbjct: 370 PTEQFVDLSSLNAEERNIYDLIVKRFIAVLSQPFEYEQTTVKLAVAGENFYAKGKIVRSA 429
Query: 446 GFTGV---------MTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISL 496
G+ V ++S+PD + G + + K + KT PP TE+ L+S
Sbjct: 430 GWKTVYDGFGKLDEDNEEDDNDQSLPDIQKGQKAKVVAPKAINGKTKPPARYTEATLLSA 489
Query: 497 ME-----------------KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
ME G+GT A+ I + YV G+ + PTS G L+
Sbjct: 490 MEHPGKFVDNKALKEALENTSGLGTPATRADIIEKLFNTFYVE-RRGKEIHPTSKGTQLI 548
>gi|149182053|ref|ZP_01860538.1| DNA topoisomerase III [Bacillus sp. SG-1]
gi|148850232|gb|EDL64397.1| DNA topoisomerase III [Bacillus sp. SG-1]
Length = 724
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 130/503 (25%), Positives = 213/503 (42%), Gaps = 63/503 (12%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGLD----FTSKYNNWDKVDPLELFSCPTEKREATPKLKLP 97
G + GD + +T GH++ L + SKY W +++ L + P + + K
Sbjct: 24 GFIEGDKYI--VTWALGHLVTLAEPDVYDSKYQTW-RIEDLPMM--PDKLKLVVIKKTGR 78
Query: 98 AFLANEAK----DCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAIT 152
F A +++ D + V+ D +EGE + ++E R +N P K +W S++T
Sbjct: 79 QFTAVKSQMTRQDVKEFVIATDAGREGELVARWIIEKAR----VNKPIKRLW---ISSVT 131
Query: 153 DKDIKAAMWNLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISY 210
DK IK L +E + AR E D +G TR T + +S
Sbjct: 132 DKAIKEGFRKLKSGKEYENLYAAAQARSEADWYVGMNATRALTVKHNAQ--------LSC 183
Query: 211 GPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRG-----HIFDKSTC 265
G QTPTLG +R ++I+ FKP+P++ L ++TW G F K
Sbjct: 184 GRVQTPTLGIIAQREEEIKNFKPKPFY----GLKAKSREFTLTWQDGKTKEYRTFSKDFI 239
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
F ++ EK V V S K PQ + EL R A G + I ++LY
Sbjct: 240 EKVFGNLKGEKKANVTSVNKSLKKSFSPQLYDLTELQRDAHKIFGYSAKETLSIMQKLYE 299
Query: 326 Q-GYVSYPRTETTQYPENFDLVAVLRQQ---ESSPDWGDHVREVLSNGISKPRK----GK 377
Q ++YPRT++ D+V L+ + S + + + N KP K
Sbjct: 300 QHKLLTYPRTDSRHLSS--DIVDTLKDRIKAVSIKPYNQLAAKAMKN-TGKPGKTFVDDS 356
Query: 378 DVGDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFT 436
V DH I PT + A L ++YD +V+ F+ Y Q + +A E F
Sbjct: 357 KVSDHHAIIPTEQTAFLNSLSDKERKIYDLVVKRFLAMFLPPFQYEQTTIEADIAGETFV 416
Query: 437 MEAKYLLHPGF--------TGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYL 488
+ K ++ G+ +G + ++++P + GD++P+ S++ +T PP
Sbjct: 417 AKGKRIIEQGWKEIFDRTTSGEDAGDGLSDQTLPKIEKGDILPVSSIEKTTGETQPPSRF 476
Query: 489 TESELISLME---KHGIGTDASI 508
E L+S ME K+ G D +
Sbjct: 477 NEGTLLSAMENPKKYMAGEDKEL 499
>gi|402573512|ref|YP_006622855.1| DNA topoisomerase III [Desulfosporosinus meridiei DSM 13257]
gi|402254709|gb|AFQ44984.1| DNA topoisomerase III [Desulfosporosinus meridiei DSM 13257]
Length = 726
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 142/530 (26%), Positives = 228/530 (43%), Gaps = 71/530 (13%)
Query: 58 GHIMGL----DFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEF--LV 111
GH++ L + KY +W K++ L + E K + N K E L+
Sbjct: 43 GHLVTLADPESYDEKYKSW-KIEDLPMLPPKMELVVMKETSKQFGVVKNLMKSPEIADLI 101
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
+ D +EGE + +++ + I K +W S++T++ IK +L +E+
Sbjct: 102 IATDAGREGELVARWIIKKAGWRKPI---KRLW---ISSLTERAIKEGFNHLKPGKEYES 155
Query: 172 --RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
+ + R E D +G TR T + + +S G QTPTL VER ++I+
Sbjct: 156 LYAAAECRAEADWLVGLNVTRALTCKYNAQ--------LSAGRVQTPTLAMVVERENEIK 207
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTW----SRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS 285
F + YW T+N ++ W + IFDK+ + + K VV+V+
Sbjct: 208 KFVTKDYW----TINAMAKGFTLQWQDHQGQTRIFDKNKADQLLAKISG-KAGEVVEVKK 262
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY-TQGYVSYPRTETTQYPENFD 344
K + P A + EL R A+ G + ++LY V+YPRT++ E D
Sbjct: 263 EAKKEFPPLAYDLTELQRDANRKYGFSAKTTSSVMQQLYENHKIVTYPRTDSRYISE--D 320
Query: 345 LVAVLRQQESSPDWGDHV---REVLSNGISKPRK---GKDVGDHPPITPTKL-ATRTQLD 397
+VA + ++ S G +V R +L N ++ G V DH I PT+ T +L
Sbjct: 321 IVATIPERLKSVALGPYVDLARSILRNKPIITKRFVDGSKVSDHHAIIPTEQPPTLARLS 380
Query: 398 GDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT-WSAM 456
+ ++YD IV+ F+ L Y Q + K + E FT + K + G+ V S +
Sbjct: 381 SEELKIYDLIVKRFLAVLSPAFEYEQTLIKVVINGEGFTAKGKIVKLKGWQKVYEGQSRL 440
Query: 457 KNES----------IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME-------- 498
NES +P+ GD VK+ KT PP TE+ L+S ME
Sbjct: 441 GNESDNSDDEDEQNLPEIAKGDTFQNLVVKLKPGKTKPPARHTEATLLSAMEHPGKLIED 500
Query: 499 ---------KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
HG+GT A+ I + Y++ G+ +VPTS GI L+
Sbjct: 501 QKLREAMDQSHGLGTPATRAEIIEKLFNSFYMS-RQGKEIVPTSKGIQLI 549
>gi|347524481|ref|YP_004782051.1| DNA topoisomerase I [Pyrolobus fumarii 1A]
gi|343461363|gb|AEM39799.1| DNA topoisomerase I [Pyrolobus fumarii 1A]
Length = 676
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 139/540 (25%), Positives = 220/540 (40%), Gaps = 53/540 (9%)
Query: 34 ACSVHEWVGPLFGDLVLFKMTSVCGHIMGL-----DFTSKYNNWDKVDPLELFSCPTEKR 88
A V WV L D LF + GH+ GL F W +D E
Sbjct: 40 AYGVPYWV--LRVDGRLFVVAPAAGHLYGLYTDERGFPVFTYRWVPLDVAE--------- 88
Query: 89 EATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF 148
A K A LA +D + D D EG I + ++ N+ + +R +F
Sbjct: 89 GAKHARKFLALLATLCRDASIYINACDYDVEGSVIGYMIIR------NLGDVRRAYRMKF 142
Query: 149 SAITDKDIKAAM-------WNLVKPNIFEARSVDARQELDLRIGCAFTRY---QTKFFQG 198
SA+T DI+ A W +++ + AR ELD G +R K G
Sbjct: 143 SALTPTDIRRAFRRLEPLDWPMIEAGL-------ARHELDWLWGINVSRALMEAVKLVTG 195
Query: 199 KYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVT-WSRG 257
K ++S G Q+PTL +R + R P P + + + L + +T SR
Sbjct: 196 K-----KVVLSAGRVQSPTLVEAAKREARRRLHVPYPRFNVQVWLAGREGRLKLTIASRE 250
Query: 258 HIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAM 317
+ + V + V V + P A N +L A+ G P
Sbjct: 251 KLIEAKRIA---DRVAARGYAFVSSVAGRREYVKPPPAFNLSDLQMEAARLYGYSPAFTQ 307
Query: 318 QIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVL--SNGISKPRK 375
+IAE+LY G +SYPRT + + P D +L S P + V+ +L + G+ +P +
Sbjct: 308 EIAEQLYLDGLISYPRTNSQKLPHTLDFRGILEGLASIPAYTQLVKRLLLETRGVLRPVQ 367
Query: 376 G-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM 434
G K+ HP I PT R +L+ R+YD IVR F+ V + A
Sbjct: 368 GPKEDPAHPAIHPTGAVPRRKLNRAEERIYDLIVRRFLAAFSKPAVVERVTATLDFGVVR 427
Query: 435 FTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
+ +L G+ +S K++ IP G+ + ++ V + T PP+ T+++L+
Sbjct: 428 VNVSGTRVLEEGWYVYYPFSRPKDD-IPRVSRGERLRVERVVVETVYTEPPEAYTKAKLV 486
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
ME+ GIGT+A+ + + R Y+ ++ G V T LG + +K +L M
Sbjct: 487 RWMEEVGIGTEATRARIVETLFDRGYLRLSGGYVTV-TDLGFAVAEVLEKFFPKLTSVAM 545
>gi|403381286|ref|ZP_10923343.1| DNA topoisomerase III [Paenibacillus sp. JC66]
Length = 711
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 137/524 (26%), Positives = 215/524 (41%), Gaps = 58/524 (11%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEA-- 104
+ +T GH++ L D+ +Y +W K++ L + P E + K F A E
Sbjct: 35 YVVTWALGHLITLAEPEDYDDRYKSW-KLEDLPII--PGEMKLKVIKETSHQFRAIEKLG 91
Query: 105 --KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWN 162
D + LV+ D +EGE + +ME +R + K +W S+ TD+ IK
Sbjct: 92 KRSDLKELVIATDAGREGELVARWIMEKIRWKKPF---KRLW---ISSQTDQAIKEGFAK 145
Query: 163 LVKPNIFEAR---SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
L KP R S R E D IG TR T + + +S G QTPTLG
Sbjct: 146 L-KPGSDYNRLYQSAVCRSEADWLIGLNVTRALTSKYNAQ--------LSAGRVQTPTLG 196
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRG-----HIFDKSTCNVFFKAVEK 274
+E+ IR FKP YWLL + W + I D++ + +
Sbjct: 197 MIIEKEKAIRAFKPVDYWLLQADIG----TFQAQWRQAGSGEARIMDRAKAEDLSRRLGG 252
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPR 333
+ ++ +Q + K +P A + EL R A+ G I +RLY Q V+YPR
Sbjct: 253 QSG-KIIRLQKTEKRIPQPLAYDLTELQRDANRRYGFSAKQTSNILQRLYEQHKLVTYPR 311
Query: 334 TETTQYPENFDLVAVLRQQE-SSPDWGDHVREVLSNGISKPRKGKD---VGDHPPITPTK 389
T++ + R Q + + R VL + ++ D V DH I PT+
Sbjct: 312 TDSRYLTSDMKSTFKSRLQSIAVGPYASLARNVLKQPLQVSKRIVDDSKVTDHHAIIPTE 371
Query: 390 LATR-TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
L + +LYD IVR F+ Y Q + V+ E +++ G+
Sbjct: 372 QTVLLNSLSNEERKLYDLIVRRFLALFYPPCRYDQTKVQIQVSGETLWASGQHMKDAGWK 431
Query: 449 GVMTWSAMKNES------------IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISL 496
V S ++ +P+ K G + I+ ++ R+T PP TE+ L++
Sbjct: 432 EVYGSSDYTDDEDEPDNDSGPEQLLPELKEGQTVTIRQCRIQARQTKPPARYTEASLLTQ 491
Query: 497 MEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVH 540
MEKH +GT A+ I + + + G L PT G L+
Sbjct: 492 MEKHNLGTPATRADIIEKLLHSDTIE-RQGASLAPTGKGWQLIE 534
>gi|297530124|ref|YP_003671399.1| DNA topoisomerase III [Geobacillus sp. C56-T3]
gi|297253376|gb|ADI26822.1| DNA topoisomerase III [Geobacillus sp. C56-T3]
Length = 697
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 136/523 (26%), Positives = 224/523 (42%), Gaps = 48/523 (9%)
Query: 53 MTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEK-----REATPKLKLPAFLANE 103
+T GH++ L D+ KY W D L P + R+ + + + LA
Sbjct: 37 VTWALGHLVELKMPEDYDRKYETWRLED---LPIIPKKMGLKVIRQTSHQFRAIERLAKR 93
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
D + +++ D +EGE + ++E I K +WR S+ TD+ I+ L
Sbjct: 94 P-DVKDVIIATDAGREGELVARWILEM------IGWTKPIWRLWISSQTDRAIRDGFRQL 146
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
F+ +S R E D IG +R T KY D +S G QTPTL
Sbjct: 147 KPGAQFDRLYQSAVCRAEADWLIGLNVSRALTT----KYNDP----LSAGRVQTPTLAMI 198
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSR--GH-IFDKSTCNVFFKAVEKEKHV 278
+ER +I++F P PYW T+ +++ W R GH +FD+ ++ +
Sbjct: 199 IEREREIQSFVPVPYW----TIRAKIGSITGVWERHGGHRLFDQDEAKQLLARLDGQP-A 253
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETT 337
VV V+ KS+ P + EL R A+ G + + +RLY Q V+YPRT++
Sbjct: 254 RVVSVKRKRKSEPAPLLYDLTELQRDANKRFGFSAKKTLSVLQRLYEQHKLVTYPRTDSR 313
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPR----KGKDVGDHPPITPT-KLAT 392
P + + R + D + +L+ G +K V DH I PT +
Sbjct: 314 YLPSDMEATMTGRLLAMKSGYEDVIAPLLAKGKAKAAKRVFNDDKVTDHHAIVPTDERLN 373
Query: 393 RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
++L D +LYD I R F+ A F + EMF + +++ GF V+
Sbjct: 374 LSRLSTDERKLYDLIARRFLALFFPPYESETTTAVFDIGGEMFVAKETAVVNFGFKAVLG 433
Query: 453 WSAMKNE-SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
+ ++ G +P ++ + T PP +E++L++ MEK+G+GT A+
Sbjct: 434 KEETDAKPTLSHLAEGQTLPSVQLEREQSFTEPPARYSEADLLAQMEKYGLGTPATRADI 493
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
I + + V G R PT G L+ + ++ EL P +
Sbjct: 494 IERLVETEVVERKDG-RFYPTKKGKQLI---ELVNEELKSPEL 532
>gi|374711034|ref|ZP_09715468.1| DNA topoisomerase III [Sporolactobacillus inulinus CASD]
Length = 700
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 133/515 (25%), Positives = 222/515 (43%), Gaps = 54/515 (10%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEKR---EATPKLKLPAFLANE 103
+ +T GH++ L ++ KY W +++ L + E R + + + + LA
Sbjct: 36 YIVTWALGHLIELKMPEEYDQKYKTW-RIEDLPIIPNKMETRPIKQTRAQFQAISKLAKR 94
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
KD + L++ D +EGE + +++ + I K +W S+ TDK I+ +L
Sbjct: 95 -KDLDSLIIATDAGREGELVARWIIKTIHWHKPI---KRLW---ISSQTDKAIQDGFQHL 147
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
++ +S R E D IG +R T KY D +S G QTPTL
Sbjct: 148 SPAKDYDQLYQSAVCRSEADWLIGLNVSRALT----VKYNDS----LSAGRVQTPTLSML 199
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWS---RGHIFDKSTCNVFFKAVEKEKHV 278
+ER + IRTFKP+PYW+L + + + TW + I K KA
Sbjct: 200 LERENAIRTFKPKPYWILGVDVG----GYTATWQCADKNRILSKKHV-ATLKAKISGHPA 254
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT-QGYVSYPRTET- 336
V V K + +P + EL R A+ G + + + LY V+YPRT++
Sbjct: 255 IVRQVTVKNKHERQPLPYDLTELQRDANRKFGFSAKKTLNVLQNLYEHHKIVTYPRTDSR 314
Query: 337 -------TQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTK 389
+ PE V+ + +E+ +VL+ + K V DH + PT+
Sbjct: 315 YLTPDVASTMPERLKAVSSMYGRETRSILHKQKGKVLAKFVYNESK---VSDHHALIPTE 371
Query: 390 LAT-RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
+ L D RL+D +VR F+ Y A+ + E F + PGF
Sbjct: 372 QPVFMSDLSDDERRLFDLVVRRFLALFYPQYQYRSIHAELDINGESFVLNVSEQTDPGFK 431
Query: 449 GVMTWSAMKNESIPDFK----PGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGT 504
+ SA + P K + ++ +++ ++ T PP +E++L++ MEK+G+GT
Sbjct: 432 QL---SAPSDAPHPQAKLRLTQAQQLQVRRIRVEDKMTEPPARFSEADLLTKMEKYGLGT 488
Query: 505 DASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
A+ I + Q V +G RL PT+ G L+
Sbjct: 489 PATRADIIEKLLQAESVQRING-RLCPTAKGKQLI 522
>gi|408357463|ref|YP_006845994.1| DNA topoisomerase III [Amphibacillus xylanus NBRC 15112]
gi|407728234|dbj|BAM48232.1| DNA topoisomerase III [Amphibacillus xylanus NBRC 15112]
Length = 718
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 139/532 (26%), Positives = 232/532 (43%), Gaps = 71/532 (13%)
Query: 51 FKMTSVCGHIMGLD----FTSKYNNWDKVD----PLELFSCPTEKREATPKLKLPAFLAN 102
+ +T GH++ L + KY W D P L + R+ + ++ L N
Sbjct: 36 YIVTWALGHLVTLADPEAYDPKYKQWRSEDLPMLPDRLKTVVI--RQTNRQFQVVKKLLN 93
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMW 161
KD +++ D +EGE + ++E R IN P K +W S++TDK I+A
Sbjct: 94 R-KDVSQVIIATDAGREGELVARWIIEKTR----INKPIKRLW---ISSVTDKAIQAGFR 145
Query: 162 NLVKPNIFEAR--SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
NL + + AR E D +G TR T Q + +S G QTPTL
Sbjct: 146 NLQPGEKYYPLYLAAAARSEADWYVGLNATRALTTTHQAQ--------LSSGRVQTPTLA 197
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW----SRGHIFDKSTCNVFFKAVEKE 275
ER ++ FK + ++ + L NG+ +TW ++ IFDK+ +E
Sbjct: 198 MVAEREKRMSEFKSQVFYGIRARLK-NGL--QLTWHDQNNQARIFDKAKAKQLLAKLEG- 253
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRT 334
K + ++ S K P + L + A+ G + I ++LY Q V +YPRT
Sbjct: 254 KQAQIQSIKRSEKRSYAPPLHDLSSLQQEANRAYGFSGKQTLSIMQKLYEQHKVLTYPRT 313
Query: 335 ETTQYPENFDLVAVLRQQESSPDWGDH---VREVLSNGISKPR---KGKDVGDHPPITPT 388
++ D+V LR + + G++ R +L NGI + K V DH I PT
Sbjct: 314 DSRFLSS--DIVETLRDRVDACAVGEYQTAARSILKNGIKANQSFINDKKVTDHHAIIPT 371
Query: 389 KL-ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
+ + LD ++YD +V+ F+ L Y Q + + E F+M +++ G+
Sbjct: 372 EEPVLLSSLDDRERKIYDLVVKRFLACLSAPYRYEQITVEAEINRERFSMNENHVIDLGW 431
Query: 448 TGVMTWSAMKNES-IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK------- 499
V + + ES +P K G+L+ + +V++ E +TTPP+ TE L+ ME
Sbjct: 432 KAV--YQDQEEESRLPLLKEGELLDV-TVQLTEGETTPPERFTEGTLLQAMENPAKYIDT 488
Query: 500 ------------HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
G+GT A+ I+ + +Y+ + G+ + TS G L+
Sbjct: 489 GSSKQTETLKQTGGLGTVATRADIIDKLFSSHYIE-SRGKYIYTTSKGRQLL 539
>gi|315054067|ref|XP_003176408.1| DNA topoisomerase 3 [Arthroderma gypseum CBS 118893]
gi|311338254|gb|EFQ97456.1| DNA topoisomerase 3 [Arthroderma gypseum CBS 118893]
Length = 326
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 122/254 (48%), Gaps = 15/254 (5%)
Query: 304 VASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVR 363
+ S L + M+ AE LYT+G++SYPRTET Q+ DL ++ +Q S WG++ R
Sbjct: 1 MGSKYLRIDSQAIMKAAETLYTKGFISYPRTETDQFDNEIDLKKLVEKQYPSEAWGEYAR 60
Query: 364 EVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYT 422
G +PR+G++ HPPI P + T L+ + ++Y+++ R F+ D
Sbjct: 61 ---GGGFKQPRRGRNNDKAHPPIHPVAFVSPTVLNANEKKVYEFVTRRFLACCSEDAKGE 117
Query: 423 QKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKN-ESIPDFKPGDLIPIQSVKMVERK 481
+ DE F + + V + ++ + +P F + + + E K
Sbjct: 118 ATDIEIKYGDEQFHTRGLVVSERNYLDVYVYDKWESSQPLPTFVLNESFEPKEANITEGK 177
Query: 482 TTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGR----------RLVP 531
T P YLTE ELI LM+ +GIGTDA++ HI+ I R YV +P
Sbjct: 178 TVAPGYLTEPELIGLMDANGIGTDATMAEHISKIKAREYVATRPRGGGRGSGSRVDEFIP 237
Query: 532 TSLGIVLVHGYQKI 545
T LG+ LV GY +
Sbjct: 238 TKLGVALVEGYDNV 251
>gi|253575029|ref|ZP_04852368.1| DNA topoisomerase III [Paenibacillus sp. oral taxon 786 str. D14]
gi|251845485|gb|EES73494.1| DNA topoisomerase III [Paenibacillus sp. oral taxon 786 str. D14]
Length = 710
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 141/525 (26%), Positives = 217/525 (41%), Gaps = 64/525 (12%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEK------REATPKLKLPAFL 100
+ +T GH++GL D+ KY W LE EK RE + + K L
Sbjct: 35 YVVTWALGHLVGLAEPEDYDKKYATW----ALEDLPILPEKMKLKVLRETSHQFKAVQQL 90
Query: 101 ANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAA 159
+D L++ D +EGE + +ME + N P K +W S+ TDK IK
Sbjct: 91 MRR-QDIGELIVATDAAREGELLARWIMEMAK----WNKPFKRLW---ISSQTDKAIKEG 142
Query: 160 MWNLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPT 217
+L N +E +S R E D +G TR T F + +S G QTPT
Sbjct: 143 FASLKPGNQYERLYQSARCRAEADWMVGLNVTRALTTKF--------GAPLSAGRVQTPT 194
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGH----IFDKSTCNVFFKAVE 273
LG ++R ++I F+ E Y +L W G+ IFD NV + +E
Sbjct: 195 LGMIMQRENEILRFRSEEYHVLRADFG----KFEAVWRGGNGDARIFDPEKLNVLKQKLE 250
Query: 274 KEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYP 332
+V + K+ P A + EL R A+ LG + +RLY Q V+YP
Sbjct: 251 GASG-QIVKLVKHEKTVPHPLAYDLTELQRDANRLLGFSAKQTSNVLQRLYEQHKLVTYP 309
Query: 333 RTETTQYPENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPIT 386
RT++ D+ L+++ +S G + R +L + ++ D V DH I
Sbjct: 310 RTDSRYL--TSDMTDTLKERLTSVAVGPYASLARPLLRGSLHLSKRVVDDSKVTDHHAII 367
Query: 387 PTKLATR-TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHP 445
PT+ L+ D +LYD IVR FI + Q +A E + +
Sbjct: 368 PTEQTVLLNALNTDERKLYDLIVRRFISLFYPPARFDQVSVTVQIAGETLHAKGTTIKDA 427
Query: 446 GFTGVMTWSAM-----------KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
G+ V M +P+ G+ + +Q ++ +T PP TE+ L+
Sbjct: 428 GWRAVYDGQVMEEEEGGEDDAESGSVLPELTQGEAVKVQRCRVTPGRTQPPKRYTEAALL 487
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
+ MEKHG+GT A+ I + + + G L PT G L+
Sbjct: 488 TQMEKHGLGTPATRADIIEKLISSDTIE-RQGNYLHPTGKGKQLI 531
>gi|225685385|ref|YP_002729787.1| DNA topoisomerase 1 (DNA topoisomerase I) (Omega-protein) (Relaxing
enzyme) (Untwisting enzyme) (Swivelase) [Persephonella
marina EX-H1]
gi|225646805|gb|ACO04990.1| DNA topoisomerase 1 (DNA topoisomerase I) (Omega-protein) (Relaxing
enzyme) (Untwisting enzyme) (Swivelase) [Persephonella
marina EX-H1]
Length = 834
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 109/405 (26%), Positives = 170/405 (41%), Gaps = 38/405 (9%)
Query: 176 ARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEP 235
ARQ+ D +G TR T D S+ S G QTP L VER +I+ FKP+P
Sbjct: 158 ARQQSDWLVGINLTRALTVIVG------DGSVWSIGRVQTPVLKLIVERDLEIKNFKPKP 211
Query: 236 YWLLDLTLNLNG--VAVSVTWSRGHIF-DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
YW L+ + + + IF DK+ FKA++ + V +++ K
Sbjct: 212 YWQLEAVFEKDSQKFKAKLLNEKDTIFEDKNKIWEIFKALKDKDKAVVKEIEKKQHKKYA 271
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPEN---FDLVAVL 349
P + L A+ G + +A+ LY Y+SYPRTE EN DLV +
Sbjct: 272 PPLFSITTLQMTANKRFGFTAQKTLMLAQDLYEAKYISYPRTEAQHLDENPSTKDLVKNI 331
Query: 350 RQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKL-----ATRTQLDGDAWRLY 404
++ ++V +V + + DH I P L A + L+ D ++Y
Sbjct: 332 LKKLGEEQLIENVDKVGKRVFDSSK----LTDHYAIIPMNLLTEEKAKKEGLNQDHLKIY 387
Query: 405 DYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES---- 460
+ I F+ Y A + FT K L G W A+ E
Sbjct: 388 ELIKNRFLAVFMPPYEYETTKAILDIDGYQFTASGKVELSLG------WKAIDREDEDDK 441
Query: 461 ----IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
+P + GD++ S +++E KT PP + TES L++ M++ +GT A+ I +
Sbjct: 442 IEAPLPQLEKGDMVHKISQRVIEDKTKPPAHYTESTLLNKMKQLELGTGATRAGIIQTLK 501
Query: 517 QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
R Y+ G+ L+ T G L+ + D+E P M S + Q
Sbjct: 502 DRFYIK-NKGKSLIATEKGFALIEKIK--DKEFASPKMTSKWEQQ 543
>gi|392424532|ref|YP_006465526.1| DNA topoisomerase III [Desulfosporosinus acidiphilus SJ4]
gi|391354495|gb|AFM40194.1| DNA topoisomerase III [Desulfosporosinus acidiphilus SJ4]
Length = 728
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 132/496 (26%), Positives = 216/496 (43%), Gaps = 71/496 (14%)
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
L++ D +EGE + +++ + I K +W S++T++ I+ +L F
Sbjct: 100 LIIATDAGREGELVARWIIKKAGWRKPI---KRLW---ISSLTERAIRDGFNHLRPGKDF 153
Query: 170 EA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDK 227
E + + R E D +G TR T F + +S G QTPTL VER +
Sbjct: 154 ETLYAAAECRAEADWLVGLNVTRALTCKFNAQ--------LSAGRVQTPTLAMIVEREKE 205
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTW----SRGHIFDKSTCNVFFKAVEKEKHVTVVDV 283
I+ F P+ YW ++ + + + W + IF+K + V K ++D+
Sbjct: 206 IKEFVPQDYW----SVAASAQSFDLRWQDKNGQTRIFNKIKADEILTKV-KGHPGEIIDI 260
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY-TQGYVSYPRTETTQYPEN 342
+ K + P A + EL R A+ G I ++LY V+YPRT++ +
Sbjct: 261 KKEAKHEPPPLAYDLTELQRDANRKFGFSAKTTSNIMQQLYENHKLVTYPRTDSRYISD- 319
Query: 343 FDLVAVLRQQESSPDWGDHVREVLSNGI--SKPRKGK------DVGDHPPITPTKL-ATR 393
D+V L ++ S G +V L+ GI +KP K V DH I PT+ A
Sbjct: 320 -DIVPTLPERLKSVAQGPYVN--LARGILRTKPNVTKRFVDNSKVSDHHAIIPTEQPAML 376
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG----FTG 449
+L D ++YD IVR F+ L Y Q K V E+FT + + +L G + G
Sbjct: 377 NRLSSDELKIYDLIVRRFLAVLLPPFEYQQTTVKMKVNGEVFTTKGRIVLKKGWKDVYAG 436
Query: 450 VMTWSAMKNE-------SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME---- 498
T + ++E ++P+ GD + S+++ KT PP TE+ L+ ME
Sbjct: 437 DYTGAEDEDEGEAQGLQTLPEISLGDRLKSLSIRLDSHKTKPPSRHTEATLLYAMEHPAQ 496
Query: 499 -------------KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKI 545
HG+GT A+ I + Y+ G+ +VPTS GI L++ +
Sbjct: 497 MIEDRQLRDIMAQSHGLGTPATRAEIIEKLFNSFYMN-RQGKEIVPTSKGIQLIN---LV 552
Query: 546 DRELVEPTMRSAYRVQ 561
EL P + + + Q
Sbjct: 553 PEELKSPELTAQWEQQ 568
>gi|297527156|ref|YP_003669180.1| DNA topoisomerase I [Staphylothermus hellenicus DSM 12710]
gi|297256072|gb|ADI32281.1| DNA topoisomerase I [Staphylothermus hellenicus DSM 12710]
Length = 723
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/405 (24%), Positives = 180/405 (44%), Gaps = 16/405 (3%)
Query: 145 RARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRY---QTKFFQGKYG 201
RA+FS++T +++ + L + + R ELD G +R K GK
Sbjct: 181 RAKFSSLTIGELRESFRKLTSLDWEMIEAGLCRHELDWIWGINISRALMSSVKMASGK-- 238
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFD 261
++S G QTPTL + VE+ + R F P P + L + ++ N + V + +
Sbjct: 239 ---RVILSAGRVQTPTLRYIVEKDIERRLFIPLPQYSLSINISKNNYEIHVEYKGKAVET 295
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
K K ++ ++TV + P A N +L A+ P+ IAE
Sbjct: 296 KKKAKEIIKDIKNTGYLTVKKYEEKKYWLNPPPAFNLGDLQEEAARIYRFSPYKTQSIAE 355
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVL--SNGISKPRKG-KD 378
+LY +SYPRT + + P + ++ + ++ + + +L + G+ KP +G KD
Sbjct: 356 KLYLDALISYPRTNSQKLPPTLNYKGIMNKLSRINNYKELISNLLVETRGVLKPVQGPKD 415
Query: 379 VGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADE---MF 435
HP I PT + + L D W++YD IVR F+ + ++ + +F
Sbjct: 416 DPAHPAIYPTGVKPK-DLGKDEWKIYDLIVRRFLAAFASRARISHRIVYLEYPKDPSMVF 474
Query: 436 TMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELIS 495
+ +L G+ +S + +P F+ G+ + I + + T PP+ ++ +++
Sbjct: 475 MASGRKILELGWLRYYPFSMPEERFLPRFQHGEKVKITKASIRKTYTKPPEKISRIKILR 534
Query: 496 LMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVH 540
ME GIGT+A+ I + R Y+ G R+ T LG+ ++
Sbjct: 535 WMENVGIGTEATRARIIEILFNRKYLRSVGG-RVEATDLGLGIIE 578
>gi|15896200|ref|NP_349549.1| DNA topoisomerase III [Clostridium acetobutylicum ATCC 824]
gi|337738155|ref|YP_004637602.1| DNA topoisomerase III [Clostridium acetobutylicum DSM 1731]
gi|384459666|ref|YP_005672086.1| DNA topoisomerase III [Clostridium acetobutylicum EA 2018]
gi|15025999|gb|AAK80889.1|AE007791_9 Topoisomerase B [Clostridium acetobutylicum ATCC 824]
gi|325510355|gb|ADZ21991.1| DNA topoisomerase III [Clostridium acetobutylicum EA 2018]
gi|336293258|gb|AEI34392.1| DNA topoisomerase III [Clostridium acetobutylicum DSM 1731]
Length = 728
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 128/477 (26%), Positives = 210/477 (44%), Gaps = 61/477 (12%)
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWN 162
E KD + LV+ D +EGE + ++E + + I K +W S+ TD+ ++ +
Sbjct: 93 ERKDLDELVIATDAGREGELVARWIIEMAKWKKPI---KRLW---ISSQTDRAVRDGFAH 146
Query: 163 LVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGF 220
L +E +S R E D +G TR T + + +S G QTPTL
Sbjct: 147 LRDGRDYENLYKSAKCRSEADWFVGLNVTRALTCKYNAQ--------LSAGRVQTPTLYM 198
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRG----HIFDKSTCNVFFKAVEKEK 276
V R ++IR FKP+ Y+ ++ + + S+ W IF+K +A+ K
Sbjct: 199 IVSREEEIRKFKPKDYYTIEGKVK----SFSMNWHDKSGDFKIFNKERAEK-IEALVKGS 253
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY-TQGYVSYPRTE 335
+VDV S K K P + EL R A+ G + I +RLY ++YPRT+
Sbjct: 254 KGKIVDVSESKKKKYSPALYDLTELQRDANRFFGFSAKETLSIMQRLYENHKLLTYPRTD 313
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVR---EVLSNGISKPRKGKD---VGDHPPITPT- 388
+ P D+VA L + + G + + E+L + I+ + D V DH I PT
Sbjct: 314 SRYIPH--DVVATLPDRLRAISIGKYSKFAAEILRSKINVHKGFVDDSKVTDHYAIIPTE 371
Query: 389 KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
+ L + +++YD +V+ F+ + Y Q K VA E+F + K + G+
Sbjct: 372 ERPALGALSNEEFKIYDLVVKRFLSIMLPPFEYIQTTVKAEVAGEIFIAKGKVVKSKGWK 431
Query: 449 GVM-------TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK-- 499
V S +K++ +P+ G+ I +V + + +T PP TE+ L+S ME
Sbjct: 432 EVYDKTEDFEEKSELKDQMLPEMNKGEDITFSTVSIKKGQTKPPSRFTEATLLSAMENPQ 491
Query: 500 ----------------HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVH 540
G+GT A+ I + + Y+ G +VPTS G LV+
Sbjct: 492 RYVSMDKISAKTLGETGGLGTVATRADIIEKLYKTFYIE-KKGNEIVPTSKGKQLVN 547
>gi|336113959|ref|YP_004568726.1| DNA topoisomerase III [Bacillus coagulans 2-6]
gi|335367389|gb|AEH53340.1| DNA topoisomerase III [Bacillus coagulans 2-6]
Length = 695
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 141/531 (26%), Positives = 233/531 (43%), Gaps = 46/531 (8%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEK---REATPKLKLPAFLANE 103
+ +T GH++ L D+ SKY W +++ L + E R+ P+ K L
Sbjct: 35 YIVTWALGHLIELKMPEDYHSKYKEW-RMEDLPILPDKMETKTIRQTYPQYKAIEQLGKR 93
Query: 104 A--KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMW 161
+ KDC ++ D +EGE + ++E +R + K V R S+ TDK IK
Sbjct: 94 SDIKDC---IIATDAGREGELVARWILEKMRWK------KPVKRLWISSQTDKAIKDGFK 144
Query: 162 NLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
L ++ RS R E D IG +R T KY D +S G QTPTL
Sbjct: 145 QLKPAKQYDNLYRSAVCRSEADWLIGLNVSRALT----VKYNDP----LSAGRVQTPTLA 196
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
+ER +I++F P+ YW ++ V+ + IFD+ N A+ + V
Sbjct: 197 MVLEREREIQSFVPKKYWTIEALAGKLEVSYDHNGEK-RIFDEQKANAIHAALSGQTAV- 254
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETTQ 338
V V K + +P + EL R A+ G + + + LY Q V+YPRT++
Sbjct: 255 VTQVIRKQKQEQQPLPYDLTELQRDANHRFGFTAKKTLNVLQNLYEQHKLVTYPRTDSKY 314
Query: 339 YPENFDLVAVLRQQESSPDWGDHVREVLSN--GISKPRKGKD--VGDHPPITPT-KLATR 393
++ + R + + V+ VLS I R D V DH I PT +
Sbjct: 315 LTKDMENTMYDRLLAVKDAYKEEVQPVLSRKGNILAKRVINDAKVTDHHAIIPTDERPAL 374
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLL--HPGFTGVM 451
L D ++YD IV+ F+ VY + +F + T+ + + + GFT V+
Sbjct: 375 PDLSADERKIYDLIVKRFLALFYP--VYEYETVQFKLQAGGKTLAGRTMAVKNAGFTAVL 432
Query: 452 TWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPV 510
+ N ++ K G ++ +++ + T P +E++++S MEK+G+GT A+
Sbjct: 433 HHEQERENTALLSIKEGKTFKLEQIRLSQHLTEAPKRYSEADILSRMEKYGLGTPATRAD 492
Query: 511 HINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
I + ++ SG RLVPT G L+ ++ EL P + + + Q
Sbjct: 493 IIERLVSSETISRESG-RLVPTPKGKQLI---DLVNDELKSPELTAKWEEQ 539
>gi|218884347|ref|YP_002428729.1| DNA topoisomerase I [Desulfurococcus kamchatkensis 1221n]
gi|218765963|gb|ACL11362.1| DNA topoisomerase I family A [Desulfurococcus kamchatkensis 1221n]
Length = 679
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 112/446 (25%), Positives = 197/446 (44%), Gaps = 17/446 (3%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L + ++ V D D EG I + ++ + N + K +RARFS++T ++++ A
Sbjct: 102 LGKLCRGVDYYVNACDYDIEGSVIGYLII-----KFNGDERKA-FRARFSSLTIEELRKA 155
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
NL + + + R ELD G +R K + G+ ++S G QTPTL
Sbjct: 156 FNNLTRLDYEMIEAGLCRHELDWIWGINVSRALMKAVEDAVGE--RIILSAGRVQTPTLK 213
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
+ V++ + F P P + +++T+ NG + + ++ + + + + K++
Sbjct: 214 YVVDKVVERNLFIPLPQYNINITVEKNGEKIRLEYTGNPVEKERDARDIVEKIRGYKYLI 273
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQY 339
V V+ P N +L + A+ G P IAE+LY +SYPRT + +
Sbjct: 274 VSKVEKKHHILHPPPPFNLGDLQKEAARLYGFSPAETQSIAEQLYLDALISYPRTNSQKL 333
Query: 340 PENFDLVAVLRQQESSPDWGDHVREVLS--NGISKPRKG-KDVGDHPPITPTKLATRTQL 396
P D +L S + + V ++S G+ P +G K+ HP I PT + +L
Sbjct: 334 PPTLDYRRILENISSIKSYRNLVESLISETKGVLTPVEGEKEDPAHPAIYPTGVVP-GRL 392
Query: 397 DGDAWRLYDYIVRHFIGTLC--GDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
W +YD IV+ F+ +VY A + +F + + + G+ +
Sbjct: 393 TEKQWAIYDLIVKRFLAVFAPPAKIVYYVVKATTPSHEYVFETKGQVIEEYGWLKYYNFH 452
Query: 455 AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINN 514
IP K G+L+ I E T PP LT+++L+ ME IGT+A+ I
Sbjct: 453 NYHAGKIPVLKEGELLNIVKATASESYTKPPKRLTKTDLLRWMESVEIGTEATRAQIIEK 512
Query: 515 ICQRNYV---TVTSGRRLVPTSLGIV 537
+ +R Y+ +SG + G+V
Sbjct: 513 LFERKYLYQHQKSSGIDVSEIGFGVV 538
>gi|300855523|ref|YP_003780507.1| DNA topoisomerase I [Clostridium ljungdahlii DSM 13528]
gi|300435638|gb|ADK15405.1| DNA topoisomerase I [Clostridium ljungdahlii DSM 13528]
Length = 734
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 125/480 (26%), Positives = 205/480 (42%), Gaps = 66/480 (13%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD +V+ D +EGE + ++E R +N P K +W S+ TDK I NL
Sbjct: 95 KDVTEIVIATDAGREGELVARWIIEKAR----VNKPIKRLW---ISSQTDKAINEGFRNL 147
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
+ ++ R+ R E D +G TR T + +S G QTPTL
Sbjct: 148 KPSSQYDNLYRAAQCRAEADWIVGLNVTRALTCKHNAQ--------LSAGRVQTPTLAMI 199
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHI--FDKSTCNVFFKAVEKEKHVT 279
V R ++I+ FKP+ Y+ + N NG + GH FD++ N V + +
Sbjct: 200 VHREEEIKNFKPKDYY--SIIGNANGYTLQWQNGNGHFNTFDENFANKVVSKVNGQ-NGK 256
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETTQ 338
++DV S K K P + EL R A+ G + I +RLY +++YPRT++
Sbjct: 257 ILDVIKSDKKKYAPALYDLTELQRDANRLFGYSAKQTLSIMQRLYENYKFLTYPRTDSRY 316
Query: 339 YPENFDLVAVLRQQESSPDWGDHVR---EVLSNGISKPRKG----KDVGDHPPITPTK-L 390
D+V L ++ + G++ + E++ I + KG V DH I PT+
Sbjct: 317 ISA--DIVPTLPERLKAISVGNYSKFAMEIMRGKI-RAHKGFVDDSKVSDHHAIIPTEEK 373
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
++L + ++YD +V+ F+ + Y Q K + E F K + G+ V
Sbjct: 374 VILSKLSNEERKVYDLVVKRFLSVMLPPFEYVQTTVKAEINGENFAASGKVIKSKGWKAV 433
Query: 451 ------------MTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
+ + +K + +P+ GD I + +VKM + +T PP E L+S ME
Sbjct: 434 YDKNEDFDDNDGLHENQLKEQVLPNLNRGDSIKLTAVKMHKGQTKPPARFNEGTLLSAME 493
Query: 499 K------------------HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVH 540
G+GT A+ I + Y+ G+ ++PTS G +V
Sbjct: 494 NPQKYINMNKEYAKTLGETGGLGTVATRADIIEKLFNTFYIE-KKGKEIIPTSKGKQVVE 552
>gi|255656257|ref|ZP_05401666.1| DNA topoisomerase III [Clostridium difficile QCD-23m63]
Length = 678
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/420 (27%), Positives = 191/420 (45%), Gaps = 37/420 (8%)
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
D + +V+ D +EGE + ++E + Q+ K + R S+ TDK IK L
Sbjct: 96 DIDEIVIATDAGREGELVARWIIE--KSQV----KKPIKRLWISSSTDKAIKEGFAKLKS 149
Query: 166 PNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVE 223
+E S AR E D IG TR T + + +S G QTPTL ++
Sbjct: 150 GKEYENLYYSAIARAEADWIIGINATRALTTKYNAQ--------LSCGRVQTPTLAMLLK 201
Query: 224 RHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWS----RGHIFDKSTCNVFFKAVEKEKHVT 279
R ++IR FKP+ Y+ L+L + W+ F K K V K +
Sbjct: 202 REEEIRNFKPKEYYGLELIATKGNSDIKFIWNDKNNNSSTFSKEKIESTLKKV-KGVDIK 260
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQ 338
+ +V S K K P + EL R A+ G + I ++LY V +YPRT++
Sbjct: 261 ISEVNKSYKKKYSPALYDLTELQRDANKMFGFSAKETLSIMQKLYEHHKVLTYPRTDSRY 320
Query: 339 YPENFDLVAVLRQQESSPDWGDHVR---EVLSNGISKPRKGKD---VGDHPPITPTKLAT 392
D+V L+ + + + D+ R ++L + I+ + D V DH I PT+
Sbjct: 321 LTS--DIVGTLKDRIKAVNISDYSRICNKLLKSNITANKSFVDNSKVTDHHAIIPTEQKV 378
Query: 393 RTQLDGDAWR-LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
D R +Y+ +V+ F+ L Y Q +V E+F + +++ G+
Sbjct: 379 FMSDFSDKERKIYNLVVKRFLAVLSPPFEYEQTTISATVEGEIFKAKGNKVINLGWK--E 436
Query: 452 TWSAMKNE----SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDAS 507
++ +++E SIP+ D++ ++ +K+ KT PP YL E L++ MEK+G+GT A+
Sbjct: 437 SYKDIEDEDEYESIPNVLEKDVLKVKGLKVTSGKTNPPPYLNEGTLLTAMEKNGLGTVAT 496
>gi|390938860|ref|YP_006402598.1| DNA topoisomerase I [Desulfurococcus fermentans DSM 16532]
gi|390191967|gb|AFL67023.1| DNA topoisomerase I [Desulfurococcus fermentans DSM 16532]
Length = 678
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/446 (25%), Positives = 195/446 (43%), Gaps = 17/446 (3%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L + ++ V D D EG I + ++ + N + K +RARFS++T ++++ A
Sbjct: 101 LGKLCRGVDYYVNACDYDIEGSVIGYLII-----KFNGDERKA-FRARFSSLTIEELRKA 154
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
NL + + + R ELD G +R K + G+ ++S G QTPTL
Sbjct: 155 FNNLTRLDYEMIEAGLCRHELDWIWGINVSRALMKAVEDAVGE--KIILSAGRVQTPTLK 212
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
+ V++ + F P P + +++T+ NG + + ++ + + + + K++
Sbjct: 213 YVVDKVIERNLFIPLPQYNINITVEKNGEKIRLEYTGNPVEKERDARNIVEKIRGYKYLI 272
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQY 339
V V+ P N +L + A+ G P IAE+LY +SYPRT + +
Sbjct: 273 VSKVEKKHHILHPPPPFNLGDLQKEAARLYGFSPAETQSIAEQLYLDALISYPRTNSQKL 332
Query: 340 PENFDLVAVLRQQESSPDWGDHVREVLS--NGISKPRKG-KDVGDHPPITPTKLATRTQL 396
P D +L S + + V ++S G+ P +G K+ HP I PT + +L
Sbjct: 333 PPTLDYRRILGNISSIKSYRNLVESLISETKGVLTPVEGEKEDPAHPAIYPTGVVP-GRL 391
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK--YLLHPGFTGVMTWS 454
W +YD IV+ F+ V K + + E K + G+ +
Sbjct: 392 TEKQWAIYDLIVKRFLAVFAPPAKIVHYVVKAATPSHEYVFETKGQVIEEYGWLKYYNFH 451
Query: 455 AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINN 514
IP K G+L+ I + E T PP LT+++L+ ME IGT+A+ I
Sbjct: 452 NYHAGKIPVLKEGELLNIVKATVSESYTKPPKRLTKTDLLRWMESVEIGTEATRAQIIEK 511
Query: 515 ICQRNYV---TVTSGRRLVPTSLGIV 537
+ +R Y+ +SG + G+V
Sbjct: 512 LFERKYLYQHRKSSGIDVSEIGFGVV 537
>gi|296450304|ref|ZP_06892064.1| DNA topoisomerase TopB [Clostridium difficile NAP08]
gi|296878716|ref|ZP_06902720.1| DNA topoisomerase TopB [Clostridium difficile NAP07]
gi|296260865|gb|EFH07700.1| DNA topoisomerase TopB [Clostridium difficile NAP08]
gi|296430290|gb|EFH16133.1| DNA topoisomerase TopB [Clostridium difficile NAP07]
Length = 706
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/420 (27%), Positives = 191/420 (45%), Gaps = 37/420 (8%)
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
D + +V+ D +EGE + ++E + Q+ K + R S+ TDK IK L
Sbjct: 96 DIDEIVIATDAGREGELVARWIIE--KSQV----KKPIKRLWISSSTDKAIKEGFAKLKS 149
Query: 166 PNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVE 223
+E S AR E D IG TR T + + +S G QTPTL ++
Sbjct: 150 GKEYENLYYSAIARAEADWIIGINATRALTTKYNAQ--------LSCGRVQTPTLAMLLK 201
Query: 224 RHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWS----RGHIFDKSTCNVFFKAVEKEKHVT 279
R ++IR FKP+ Y+ L+L + W+ F K K V K +
Sbjct: 202 REEEIRNFKPKEYYGLELIATKGNSDIKFIWNDKNNNSSTFSKEKIESTLKKV-KGVDIK 260
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQ 338
+ +V S K K P + EL R A+ G + I ++LY V +YPRT++
Sbjct: 261 ISEVNKSYKKKYSPALYDLTELQRDANKMFGFSAKETLSIMQKLYEHHKVLTYPRTDSRY 320
Query: 339 YPENFDLVAVLRQQESSPDWGDHVR---EVLSNGISKPRKGKD---VGDHPPITPTKLAT 392
D+V L+ + + + D+ R ++L + I+ + D V DH I PT+
Sbjct: 321 LTS--DIVGTLKDRIKAVNISDYSRICNKLLKSNITANKSFVDNSKVTDHHAIIPTEQKV 378
Query: 393 RTQLDGDAWR-LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
D R +Y+ +V+ F+ L Y Q +V E+F + +++ G+
Sbjct: 379 FMSDFSDKERKIYNLVVKRFLAVLSPPFEYEQTTISATVEGEIFKAKGNKVINLGWK--E 436
Query: 452 TWSAMKNE----SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDAS 507
++ +++E SIP+ D++ ++ +K+ KT PP YL E L++ MEK+G+GT A+
Sbjct: 437 SYKDIEDEDEYESIPNVLEKDVLKVKGLKVTSGKTNPPPYLNEGTLLTAMEKNGLGTVAT 496
>gi|300763485|ref|ZP_07073483.1| DNA topoisomerase III [Listeria monocytogenes FSL N1-017]
gi|300515762|gb|EFK42811.1| DNA topoisomerase III [Listeria monocytogenes FSL N1-017]
Length = 717
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 122/467 (26%), Positives = 206/467 (44%), Gaps = 45/467 (9%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVD----PLELFSCPTEKREATPKLKLPAFLAN 102
+ +T GH++ L + SKY NW+ D P ++ P ++ + + L N
Sbjct: 36 YVVTWALGHLVTLADPERYDSKYKNWNMEDLPMLPEKMKLEPI--KQTRKQYETVKKLMN 93
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMW 161
D +V+ D +EGE + +++ + I P K +W S++TDK I+
Sbjct: 94 RT-DITTIVIATDAGREGELVARWIIDYAK----IKKPLKRLW---ISSVTDKAIREGFE 145
Query: 162 NLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
+L +E S AR E D +G TR T + + +S G QTPTL
Sbjct: 146 HLKPGKAYENLYHSAVARSEADWVVGINATRALTTKYNAQ--------LSCGRVQTPTLA 197
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
R ++IR FKP Y+ + S TW+ G FDK+ K+++ E V
Sbjct: 198 MIQHREEEIRNFKPREYYGITALTEQE----SFTWNNGQTFDKALAEKLVKSLQGENAV- 252
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQ 338
+ DV K P + EL R A++ + I + LY + V +YPRT++
Sbjct: 253 ITDVSMKEKKNFSPGLYDLTELQRDANNRYDFSAKETLNIMQTLYERHKVLTYPRTDSRF 312
Query: 339 YPENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTKL-A 391
+ D+V L+++ ++ G++ R++ I + D V DH I PT+
Sbjct: 313 I--STDIVPTLKERLAACGVGENAKAARQISGKPIKANKSFVDNSKVSDHHAIIPTEQPV 370
Query: 392 TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
+ L ++YD +V+ F+ L +Y + K + E FT++ K + G+ +
Sbjct: 371 SLGDLSDKERKIYDLVVKRFLAVLSDPYIYEETSVKAKIGQEEFTLKGKVVKSLGWKSIY 430
Query: 452 TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
S N+ + K GD IP++ + + KT PP E+ L+S ME
Sbjct: 431 GESREPNQ-LTKMKKGDTIPVKRINLETGKTKPPARFNEATLLSAME 476
>gi|258515237|ref|YP_003191459.1| DNA topoisomerase III [Desulfotomaculum acetoxidans DSM 771]
gi|257778942|gb|ACV62836.1| DNA topoisomerase III [Desulfotomaculum acetoxidans DSM 771]
Length = 721
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 151/563 (26%), Positives = 230/563 (40%), Gaps = 97/563 (17%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVD----PLELFSCPTEKREATPKLKLPAFLAN 102
+ +T GH++ L D+ KY W D P E+ + +K P+ + + L
Sbjct: 35 YIVTWALGHLVTLAEPEDYDEKYKTWRTEDLPMLPAEMKTVVIKK--TGPQFHIVSKLMK 92
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWN 162
D L++ D +EGE + +M+ R Q K +W S++TD+ I+
Sbjct: 93 RP-DVRELIIATDAGREGELVARWIMKQARCQKPF---KRLW---ISSLTDEAIREGFTR 145
Query: 163 LVKP-----NIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPT 217
L +P N+++ S R E D IG TR T + + +S G QTPT
Sbjct: 146 L-RPGTEYNNLYD--SAICRAEADWLIGLNVTRALTVKYNAQ--------LSAGRVQTPT 194
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKS-TCNVFFKAVE--- 273
L V R +I+ F P +W T+ N W DKS N F ++
Sbjct: 195 LAMLVSREKEIKRFVPTDFW----TVKANLGKFQAEWR-----DKSGKHNRFSDCLQAET 245
Query: 274 -----KEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-G 327
KEK V+D+ + KS+ P A + EL R A+ G + + LY +
Sbjct: 246 IVNKVKEKSGEVIDLITQEKSEQPPLAYDLTELQRDANKKFGYTAQKTLAGLQMLYERHK 305
Query: 328 YVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPR-------KGKDVG 380
V+YPRT++ + + R + S G + E++ +KP V
Sbjct: 306 LVTYPRTDSRYLTSDMVPTLMPRLKAVS---GGYFAELVKPLTAKPLPINKRLVDNSKVT 362
Query: 381 DHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA 439
DH I PT + A L + +YD IVR FI Y Q +A E F
Sbjct: 363 DHHAIIPTTERANLAALTAEEKNIYDLIVRRFIAVFYPAYSYKQTTVIVLIAGEHFHASG 422
Query: 440 KYLLHPGFTGVMT---------WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTE 490
K + +PG+ V + +++P K GD + + S K V+ +T PP TE
Sbjct: 423 KVVTNPGWKAVYNNESREKDTGYDDTPEQNLPPLKKGDKVKVLSCKSVKGQTKPPARYTE 482
Query: 491 SELISLME----------------KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSL 534
+ L+S ME + G+GT A+ I I NYV G+ L+PT+
Sbjct: 483 ASLLSAMEHPGKFIEDEILKESVKESGLGTPATRAEIIEKIISSNYVE-RRGKELIPTAK 541
Query: 535 GIVLVHGYQKIDRELVEPTMRSA 557
GI LV ELV P ++ A
Sbjct: 542 GIQLV--------ELVPPELKQA 556
>gi|238853070|ref|ZP_04643462.1| DNA topoisomerase I [Lactobacillus gasseri 202-4]
gi|238834318|gb|EEQ26563.1| DNA topoisomerase I [Lactobacillus gasseri 202-4]
Length = 693
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 120/469 (25%), Positives = 201/469 (42%), Gaps = 61/469 (13%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L +EAK +++ L D D+EGE I + V H +N++ PK R F+ IT+ +K A
Sbjct: 73 LKSEAKKAKYVYLASDPDREGEAIAWHVA----HALNLD-PKEHNRVAFNEITNDAVKNA 127
Query: 160 MWNLVKPNIFEARSVDARQE---LDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQT 215
N P + VDA+Q LD +G + + K +G +S G Q+
Sbjct: 128 FKN---PRTIDMDIVDAQQARRVLDRLVGYSISPILWQKVKKG---------LSAGRVQS 175
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTL-----NLNGVAVSVTWSRGHIFDKSTCNVFFK 270
L ++R ++I+ FKPE YW +D G + + + + K
Sbjct: 176 IALKLVIDRENEIKNFKPEEYWTIDADFEKGKEKFKGAFYGIKGKKQDLPNNEAVQDILK 235
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY------ 324
++K K+ V V + + T + + A+ LG M+IA+ LY
Sbjct: 236 QIDKRKNFEVTKVVKKERRRQPAAPFTTSTMQQEANKRLGYRTRRTMRIAQSLYEGVNLG 295
Query: 325 --TQGYVSYPRTETTQYPENFDLVAVLRQQESSP----DWGDHVREVLSNGISKPRKGKD 378
+ G ++Y RT++ + +A + + E+S ++G + + KP+ K+
Sbjct: 296 KGSVGLITYMRTDSKR-------IANVAKHEASKFIHEEYGANYAAI------KPQHFKN 342
Query: 379 VGD----HPPITPTKL-----ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFS 429
D H I PT + + L + +RLY I FI + VY A
Sbjct: 343 DADAQDAHEAIRPTSAFRTPASVKEYLTTEEYRLYTLIWSRFIASQMTPAVYDTVRADIE 402
Query: 430 VADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLT 489
D F L GFT V KN +P+ GD + ++ + T PP T
Sbjct: 403 QNDVTFRTTGSKLKFAGFTKVYDNQKEKNNELPELNEGDKVKLKKTDDRQHFTQPPARYT 462
Query: 490 ESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
E+ L+ +E++G+G ++ I+ I +R YV + GR +VPT LG ++
Sbjct: 463 EASLVRALEENGVGRPSTYAPTIDTIQKRYYVKL-EGRSIVPTELGEIV 510
>gi|227889896|ref|ZP_04007701.1| DNA topoisomerase I [Lactobacillus johnsonii ATCC 33200]
gi|227849340|gb|EEJ59426.1| DNA topoisomerase I [Lactobacillus johnsonii ATCC 33200]
Length = 693
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 121/469 (25%), Positives = 202/469 (43%), Gaps = 61/469 (13%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L +EAK +++ L D D+EGE I + V H +N++ PK R F+ IT +K A
Sbjct: 73 LKSEAKKAKYVYLASDPDREGEAIAWHVA----HALNLD-PKEHNRVAFNEITKDAVKNA 127
Query: 160 MWNLVKPNIFEARSVDARQE---LDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQT 215
N P + VDA+Q LD +G + + K +G +S G Q+
Sbjct: 128 FKN---PRTIDMDIVDAQQARRVLDRLVGYSISPILWQKVKKG---------LSAGRVQS 175
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDL-----TLNLNGVAVSVTWSRGHIFDKSTCNVFFK 270
L ++R ++I+ FKPE YW +D T G + + + + K
Sbjct: 176 VALKLVIDRENEIKNFKPEEYWTIDADFEKGTEKFKGAFYGIKGKKQELPNNEAVQDVLK 235
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY------ 324
++K K+ V V + + T + + A+ LG M+IA+ LY
Sbjct: 236 RIDKRKNFEVTKVVKKERRRQPAAPFTTSTMQQEANKRLGYRTRRTMRIAQSLYEGVNLG 295
Query: 325 --TQGYVSYPRTETTQYPENFDLVAVLRQQESSP----DWGDHVREVLSNGISKPRKGKD 378
+ G ++Y RT++ + +A + + E+S ++G++ V KP+ K+
Sbjct: 296 KGSVGLITYMRTDSKR-------IANVAKHEASKFIHEEYGENYAAV------KPQHFKN 342
Query: 379 VGD----HPPITPTKL-----ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFS 429
D H I PT + + L + +RLY I FI + VY A
Sbjct: 343 DADAQDAHEAIRPTSAFRTPASVKEYLTTEEYRLYTLIWSRFIASQMTPAVYDTVRADIE 402
Query: 430 VADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLT 489
D F L GFT V K+ +P+ GD + ++ + T PP T
Sbjct: 403 QNDVTFRTTGSKLKFAGFTKVYDNQKEKSNELPELNEGDKVKLKKTDDRQHFTQPPARYT 462
Query: 490 ESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
E+ L+ +E++G+G ++ I+ I +R YV + GR +VPT LG ++
Sbjct: 463 EASLVRALEENGVGRPSTYAPTIDTIQKRYYVKL-EGRSIVPTELGEIV 510
>gi|385825988|ref|YP_005862330.1| DNA topoisomerase I [Lactobacillus johnsonii DPC 6026]
gi|329667432|gb|AEB93380.1| DNA topoisomerase I [Lactobacillus johnsonii DPC 6026]
Length = 693
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 121/469 (25%), Positives = 202/469 (43%), Gaps = 61/469 (13%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L +EAK +++ L D D+EGE I + V H +N++ PK R F+ IT +K A
Sbjct: 73 LKSEAKKAKYVYLASDPDREGEAIAWHVA----HALNLD-PKEHNRVAFNEITKDAVKNA 127
Query: 160 MWNLVKPNIFEARSVDARQE---LDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQT 215
N P + VDA+Q LD +G + + K +G +S G Q+
Sbjct: 128 FKN---PRTIDMDIVDAQQARRVLDRLVGYSISPILWQKVKKG---------LSAGRVQS 175
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDL-----TLNLNGVAVSVTWSRGHIFDKSTCNVFFK 270
L ++R ++I+ FKPE YW +D T G + + + + K
Sbjct: 176 IALKLVIDRENEIKNFKPEEYWTIDADFEKGTEKFKGAFYGIKGKKQELPNNEAVQDVLK 235
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY------ 324
++K K+ V V + + T + + A+ LG M+IA+ LY
Sbjct: 236 RIDKRKNFEVTKVVKKERRRQPAAPFTTSTMQQEANKRLGYRTRRTMRIAQSLYEGVNLG 295
Query: 325 --TQGYVSYPRTETTQYPENFDLVAVLRQQESSP----DWGDHVREVLSNGISKPRKGKD 378
+ G ++Y RT++ + +A + + E+S ++G++ V KP+ K+
Sbjct: 296 KGSVGLITYMRTDSKR-------IANVAKHEASKFIHEEYGENYAAV------KPQHFKN 342
Query: 379 VGD----HPPITPTKL-----ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFS 429
D H I PT + + L + +RLY I FI + VY A
Sbjct: 343 DADAQDAHEAIRPTSAFRTPASVKEYLTTEEYRLYTLIWSRFIASQMTPAVYDTVRADIE 402
Query: 430 VADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLT 489
D F L GFT V K+ +P+ GD + ++ + T PP T
Sbjct: 403 QNDVTFRTTGSKLKFAGFTKVYDNQKEKSNELPELNEGDKVKLKKTDDRQHFTQPPARYT 462
Query: 490 ESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
E+ L+ +E++G+G ++ I+ I +R YV + GR +VPT LG ++
Sbjct: 463 EASLVRALEENGVGRPSTYAPTIDTIQKRYYVKL-EGRSIVPTELGEIV 510
>gi|290891936|ref|ZP_06554933.1| DNA topoisomerase III [Listeria monocytogenes FSL J2-071]
gi|404409134|ref|YP_006691849.1| DNA topoisomerase III [Listeria monocytogenes SLCC2376]
gi|290558530|gb|EFD92047.1| DNA topoisomerase III [Listeria monocytogenes FSL J2-071]
gi|404243283|emb|CBY64683.1| DNA topoisomerase III [Listeria monocytogenes SLCC2376]
Length = 717
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 126/470 (26%), Positives = 207/470 (44%), Gaps = 51/470 (10%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVD----PLELFSCP---TEKREATPKLKLPAF 99
+ +T GH++ L + SKY NW+ D P ++ P T KR T K
Sbjct: 36 YVVTWALGHLVTLADPERYDSKYKNWNMEDLPMLPEKMKLEPIKQTRKRYETVKK----- 90
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKA 158
L N D +V+ D +EGE + +++ + I P K +W S++TDK I+
Sbjct: 91 LMNRT-DITTIVIATDAGREGELVARWIIDYAK----IKKPLKRLW---ISSVTDKAIRE 142
Query: 159 AMWNLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTP 216
+L +E S AR E D +G TR T + + +S G QTP
Sbjct: 143 GFEHLKPGKAYENLYHSAVARSEADWVVGINATRALTTKYNAQ--------LSCGRVQTP 194
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEK 276
TL R ++IR FKP Y+ + S TW+ G FDK+ K+++ E
Sbjct: 195 TLAMIQHREEEIRNFKPREYYGITALTEQE----SFTWNNGQTFDKALAEKLVKSLQGEN 250
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTE 335
V + DV K P + EL R A++ + I + LY + V +YPRT+
Sbjct: 251 AV-ITDVSMKEKKNFSPGLYDLTELQRDANNRYDFSAKETLNIMQTLYERHKVLTYPRTD 309
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTK 389
+ + D+V L+++ ++ G++ R++ I + D V DH I PT+
Sbjct: 310 SRFI--STDIVPTLKERLAACGVGENAKAARQISGKPIKANKSFVDNSKVSDHHAIIPTE 367
Query: 390 L-ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
+ L ++YD +V+ F+ L +Y + K + E FT++ K + G+
Sbjct: 368 QPVSLGDLSDKERKIYDLVVKRFLAVLSDPYIYEETSVKAKIGQEEFTLKGKVVKSLGWK 427
Query: 449 GVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
+ S + + + K GD IP++ + + KT PP E+ L+S ME
Sbjct: 428 SIYGES-REPDQLTKMKKGDTIPVKRINLETGKTKPPARFNEATLLSAME 476
>gi|395499907|ref|ZP_10431486.1| DNA topoisomerase I subunit omega [Pseudomonas sp. PAMC 25886]
Length = 873
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 128/449 (28%), Positives = 195/449 (43%), Gaps = 32/449 (7%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
AKD + + L D D+EGE I + + EA+ R F+ IT K I+ A
Sbjct: 107 AKDADTIYLATDLDREGEAIAWHLREAIG-----GDDSRYKRVVFNEITKKAIQEAFSKP 161
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
+ +I + AR+ LD +G + K +G +S G Q+ + V
Sbjct: 162 GELDIDRVNAQQARRFLDRVVGYMVSPLLWAKIARG---------LSAGRVQSVAVKLVV 212
Query: 223 ERHDKIRTFKPEPYWLL--DL-TLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
ER +IR F PE YW + DL T N V V +G F A+EK K +
Sbjct: 213 EREREIRAFNPEEYWEVHADLGTAKGNNVRFEVAREKGEAFKPLNEAQAMAALEKLKASS 272
Query: 280 VVDVQSSTK-SKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V+ K + +KP A T L + AS+ LG G M +A+RLY GY++Y RT++T
Sbjct: 273 YSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDST 332
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR-TQL 396
+ D VA+ R S ++G N S ++ H I P+ T ++L
Sbjct: 333 NLSQ--DAVAMARTYIES-EFGKKYLPEKPNVYSSKEGAQEA--HEAIRPSDANTEPSKL 387
Query: 397 DG---DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
G DA RLY+ I R F+ Y D + + L G+T VM
Sbjct: 388 SGMERDAERLYELIWRQFLACQMLPAQYLSTTVSVGAGDFELRAKGRILKFDGYTRVMPQ 447
Query: 454 SAM--KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
A ++ +PD GD++ + + + T PP +E+ L+ MEK GIG ++
Sbjct: 448 IAKPGDDDVLPDMAQGDVLKLIKLDPSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAI 507
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLVH 540
I+ I R YV + + RR +G ++
Sbjct: 508 ISTIQDRGYVALHN-RRFYSEKMGDIVTE 535
>gi|395798513|ref|ZP_10477797.1| DNA topoisomerase I subunit omega [Pseudomonas sp. Ag1]
gi|421143607|ref|ZP_15603546.1| DNA topoisomerase I [Pseudomonas fluorescens BBc6R8]
gi|395337248|gb|EJF69105.1| DNA topoisomerase I subunit omega [Pseudomonas sp. Ag1]
gi|404505298|gb|EKA19329.1| DNA topoisomerase I [Pseudomonas fluorescens BBc6R8]
Length = 873
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 128/449 (28%), Positives = 195/449 (43%), Gaps = 32/449 (7%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
AKD + + L D D+EGE I + + EA+ R F+ IT K I+ A
Sbjct: 107 AKDADTIYLATDLDREGEAIAWHLREAIG-----GDDSRYKRVVFNEITKKAIQEAFSKP 161
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
+ +I + AR+ LD +G + K +G +S G Q+ + V
Sbjct: 162 GELDIDRVNAQQARRFLDRVVGYMVSPLLWAKIARG---------LSAGRVQSVAVKLVV 212
Query: 223 ERHDKIRTFKPEPYWLL--DL-TLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
ER +IR F PE YW + DL T N V V +G F A+EK K +
Sbjct: 213 EREREIRAFNPEEYWEVHADLGTAKGNNVRFEVAREKGEAFKPLNEAQAMAALEKLKASS 272
Query: 280 VVDVQSSTK-SKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V+ K + +KP A T L + AS+ LG G M +A+RLY GY++Y RT++T
Sbjct: 273 YSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDST 332
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR-TQL 396
+ D VA+ R S ++G N S ++ H I P+ T ++L
Sbjct: 333 NLSQ--DAVAMARTYIES-EFGKKYLPEKPNVYSSKEGAQEA--HEAIRPSDANTEPSKL 387
Query: 397 DG---DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
G DA RLY+ I R F+ Y D + + L G+T VM
Sbjct: 388 SGMERDAERLYELIWRQFLACQMLPAQYLSTTVSVGAGDFELRAKGRILKFDGYTRVMPQ 447
Query: 454 SAM--KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
A ++ +PD GD++ + + + T PP +E+ L+ MEK GIG ++
Sbjct: 448 IAKPGDDDVLPDMAQGDVLKLIKLDPSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAI 507
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLVH 540
I+ I R YV + + RR +G ++
Sbjct: 508 ISTIQDRGYVALHN-RRFYSEKMGDIVTE 535
>gi|227015824|gb|ACP17921.1| putative DNA topoisomerase I [Pseudomonas nitroreducens]
Length = 868
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 124/448 (27%), Positives = 193/448 (43%), Gaps = 32/448 (7%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
AKD + + L D D+EGE I + + EA+ R F+ IT K I+ A
Sbjct: 105 AKDADTIYLATDLDREGEAIAWHLREAIG-----GDDSRYKRVVFNEITKKAIQEAFSQP 159
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
+ +I + AR+ LD +G + K +G +S G Q+ + V
Sbjct: 160 GELDINRVNAQQARRFLDRVVGYMVSPLLWAKIARG---------LSAGRVQSVAVKLVV 210
Query: 223 ERHDKIRTFKPEPYWLLDLTLNL---NGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
ER +IR F PE YW + L + V V +G F A+EK K T
Sbjct: 211 EREREIRAFVPEEYWEVHADLGTPKNDKVRFEVAREKGEAFKPLNEAQAMAALEKLKAST 270
Query: 280 V-VDVQSSTKSKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V + + +KP A T L + AS+ LG G M +A+RLY GY++Y RT++T
Sbjct: 271 YSVSKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDST 330
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR-TQL 396
+ D + ++R S ++G N S ++ H I P+ + R TQL
Sbjct: 331 NL--SADAIDMVRGFIDS-EFGKKYLPAKPNFYSSKEGAQEA--HEAIRPSDVNLRPTQL 385
Query: 397 DG---DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
G DA RLYD I R F+ Y + D + + L G+T V+
Sbjct: 386 SGMERDAERLYDLIWRQFVACQMPPAEYLSTTVSVAAGDFELRAKGRILKFDGYTKVLPQ 445
Query: 454 SAMKNES--IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
+ E +P+ G+ + + + + T PP +E+ L+ +EK GIG ++
Sbjct: 446 QSKPGEDDVLPEMNQGETMKLLKLDPSQHFTKPPARFSEASLVKELEKRGIGRPSTYAAI 505
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLV 539
I+ I +R YVT T RR +G ++
Sbjct: 506 ISTIQERGYVT-THNRRFYAEKMGDIVT 532
>gi|419841259|ref|ZP_14364634.1| DNA topoisomerase I [Fusobacterium necrophorum subsp. funduliforme
ATCC 51357]
gi|386905585|gb|EIJ70345.1| DNA topoisomerase I [Fusobacterium necrophorum subsp. funduliforme
ATCC 51357]
Length = 749
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 137/517 (26%), Positives = 219/517 (42%), Gaps = 75/517 (14%)
Query: 51 FKMTSVCGHI-------MGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANE 103
+++ + GHI MG+D + + +S K + KLK+ A AN+
Sbjct: 26 YEVAASFGHICDLPKTKMGVDVDNDFKT--------SYSTIKGKGDVVKKLKMQAKNANK 77
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
+ L D D+EGE I + + A++ + R F ITD+ I+ A+ N
Sbjct: 78 ------VYLASDPDREGEAIAWHIANALKLDKGEQN-----RIEFHEITDRAIREAVKN- 125
Query: 164 VKPNIFEARSVDARQE---LDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGF 220
P I + V+A+Q LD +G + + K + S G Q+ L
Sbjct: 126 --PRIIDTNKVNAQQARRVLDRLVGYEISPFLWKLI--------SPNTSAGRVQSVALKL 175
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNV-------FFKAVE 273
+ DKIR F PE YW D+ N S TWS + K + K ++
Sbjct: 176 ICDLEDKIRKFVPEKYW--DVKGNFEQ---SWTWSLSKMDGKKVEKIKEESLVERVKLLQ 230
Query: 274 KEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT-------- 325
K+K TVV+ + S KSK P AL T L +++SS LG M +A++LY
Sbjct: 231 KQK-FTVVEAKISKKSKRPPLALKTSTLQQLSSSYLGFSASRTMMLAQKLYEGININGNH 289
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQES-SPDWGDHVREVLSNGISKPRKGKDVGDHPP 384
+G ++Y RT++T+ + +A E+ ++ V+E K K K H
Sbjct: 290 KGLITYMRTDSTRISQEAKEMAKSYITETFGKEYVTDVKE------KKESKQKIQDAHEA 343
Query: 385 ITPTKLATRTQ-----LDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA 439
I PT + + L+ D W+LY I F+ + + Y Q + F
Sbjct: 344 IRPTDVYVTPESLEKILEKDQWKLYKLIWERFLISELASMKYEQFEVVCEREEVQFRGSM 403
Query: 440 KYLLHPGFTGVMTWSAMKN-ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
+L G+ V N E P + GD + + +++ E T PP LTES L+ ++E
Sbjct: 404 NKILFDGYYKVFKEEEELNLEDFPKIEVGDQLELSKLEIKEDMTKPPARLTESSLVKMLE 463
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLG 535
GIG ++ I + +R Y+ V R +PT +G
Sbjct: 464 TEGIGRPSTYATIIETLKKREYI-VMEKRSFIPTEIG 499
>gi|225418685|ref|ZP_03761874.1| hypothetical protein CLOSTASPAR_05909 [Clostridium asparagiforme
DSM 15981]
gi|225041788|gb|EEG52034.1| hypothetical protein CLOSTASPAR_05909 [Clostridium asparagiforme
DSM 15981]
Length = 705
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 128/471 (27%), Positives = 204/471 (43%), Gaps = 50/471 (10%)
Query: 98 AFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIK 157
A L E K + + L D D+EGE I + +M+A++ ++ K V+R F+ IT +K
Sbjct: 71 AKLRKEVKKADKIYLATDPDREGEAISWHLMKALK--LDEAKNKQVYRISFNEITKNAVK 128
Query: 158 AAMWNLVKPNIFEARSVDARQE---LDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQ 214
A+ + P + VDA+Q LD +G + K + K G +S G Q
Sbjct: 129 ASFKS---PRDIDMHLVDAQQTRRMLDRMVGYRISPLLWK--KVKRG------LSAGRVQ 177
Query: 215 TPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW----------SRGHIFDKST 264
+ L +R D+I F PE YW LD L L G +T + I K
Sbjct: 178 SVALRMICDREDEINAFIPEEYWNLDAKLLLKGAKKPLTAKYYGSDNGKNGKTGIRSKEE 237
Query: 265 CNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY 324
+ +E +V V +V+ + K P T + + AS L M++A++LY
Sbjct: 238 LDRILADLEGCSYV-VDEVKKGERIKKAPIPFTTSTMQQEASKALNFSTQKTMRLAQQLY 296
Query: 325 ---------TQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRK 375
T G ++Y RT++T+ E D A +E +G+ + V+ N SK
Sbjct: 297 EGVEVKGHGTIGLITYLRTDSTRIAEEADATARAFIKEQ---YGE--KYVIKNEQSKKNG 351
Query: 376 GKDVGDHPPITPTKLA-----TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSV 430
GK H I PT +A + L D +RLY I + F + + VY K +
Sbjct: 352 GKIQDAHEAIRPTDIALTPTVVKESLQRDLFRLYQLIWKRFTASRMDNAVYETTSVKITA 411
Query: 431 ADEMFTMEAKYLLHPGFTGVMTWS---AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDY 487
FT A LL GF V + N+++ + + G + ++ + + T PP +
Sbjct: 412 GGHSFTTAASRLLFDGFMSVYVEADDEEEHNQALGNMEKGTKLKLEELLPSQHFTQPPAH 471
Query: 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
TE+ L+ +E+ GIG ++ I I R YV V + L T +G V+
Sbjct: 472 YTEASLVKALEEQGIGRPSTYAPTITTIIARRYV-VKESKNLYVTEIGEVV 521
>gi|417837631|ref|ZP_12483869.1| DNA topoisomerase I [Lactobacillus johnsonii pf01]
gi|338761174|gb|EGP12443.1| DNA topoisomerase I [Lactobacillus johnsonii pf01]
Length = 693
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 121/469 (25%), Positives = 201/469 (42%), Gaps = 61/469 (13%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L EAK +++ L D D+EGE I + V H +N++ PK R F+ IT +K A
Sbjct: 73 LKREAKKAKYVYLASDPDREGEAIAWHVA----HALNLD-PKEHNRVAFNEITKDAVKNA 127
Query: 160 MWNLVKPNIFEARSVDARQE---LDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQT 215
N P + VDA+Q LD +G + + K +G +S G Q+
Sbjct: 128 FKN---PRTIDMDIVDAQQARRVLDRLVGYSISPILWQKVKKG---------LSAGRVQS 175
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDL-----TLNLNGVAVSVTWSRGHIFDKSTCNVFFK 270
L ++R ++I+ FKPE YW +D T G + + + + K
Sbjct: 176 IALKLVIDRENEIKNFKPEEYWTIDADFEKGTEKFKGAFYGIKGKKQELPNNEAVQDVLK 235
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY------ 324
++K K+ V V + + T + + A+ LG M+IA+ LY
Sbjct: 236 RIDKRKNFEVTKVVKKERRRQPAAPFTTSTMQQEANKRLGYRTRRTMRIAQSLYEGVNLG 295
Query: 325 --TQGYVSYPRTETTQYPENFDLVAVLRQQESSP----DWGDHVREVLSNGISKPRKGKD 378
+ G ++Y RT++ + +A + + E+S ++G++ V KP+ K+
Sbjct: 296 KGSVGLITYMRTDSKR-------IANVAKHEASKFIHEEYGENYAAV------KPQHFKN 342
Query: 379 VGD----HPPITPTKL-----ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFS 429
D H I PT + + L + +RLY I FI + VY A
Sbjct: 343 DADAQDAHEAIRPTSAFRTPASVKEYLTTEEYRLYTLIWSRFIASQMTPAVYDTVRADIE 402
Query: 430 VADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLT 489
D F L GFT V K+ +P+ GD + ++ + T PP T
Sbjct: 403 QNDVTFRTTGSKLKFAGFTKVYDNQKEKSNELPELNEGDKVKLKKTDDRQHFTQPPARYT 462
Query: 490 ESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
E+ L+ +E++G+G ++ I+ I +R YV + GR +VPT LG ++
Sbjct: 463 EASLVRALEENGVGRPSTYAPTIDTIQKRYYVKL-EGRSIVPTELGEIV 510
>gi|300361598|ref|ZP_07057775.1| DNA topoisomerase TopA [Lactobacillus gasseri JV-V03]
gi|300354217|gb|EFJ70088.1| DNA topoisomerase TopA [Lactobacillus gasseri JV-V03]
Length = 693
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 120/469 (25%), Positives = 200/469 (42%), Gaps = 61/469 (13%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L +EAK +++ L D D+EGE I + V H +N++ PK R F+ IT +K A
Sbjct: 73 LKSEAKKAKYVYLASDPDREGEAIAWHVA----HALNLD-PKEHNRVAFNEITKDAVKNA 127
Query: 160 MWNLVKPNIFEARSVDARQE---LDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQT 215
N P + VDA+Q LD +G + + K +G +S G Q+
Sbjct: 128 FKN---PRTIDMDIVDAQQARRVLDRLVGYSISPILWQKVKKG---------LSAGRVQS 175
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTL-----NLNGVAVSVTWSRGHIFDKSTCNVFFK 270
L ++R ++I+ FKPE YW +D G + + + + K
Sbjct: 176 IALKLVIDRENEIKNFKPEEYWTIDADFEKGKEKFKGAFYGIKGKKQDLPNNEAVQDILK 235
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY------ 324
++K K+ V V + + T + + A+ LG M+IA+ LY
Sbjct: 236 QIDKRKNFEVTKVVKKERRRQPAAPFTTSTMQQEANKRLGYRTRRTMRIAQSLYEGVNLG 295
Query: 325 --TQGYVSYPRTETTQYPENFDLVAVLRQQESSP----DWGDHVREVLSNGISKPRKGKD 378
+ G ++Y RT++ + +A + + E+S ++G + + KP+ K+
Sbjct: 296 KGSVGLITYMRTDSKR-------IANVAKHEASKFIHEEYGANYAAI------KPQHFKN 342
Query: 379 VGD----HPPITPTKL-----ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFS 429
D H I PT + + L + +RLY I FI + VY A
Sbjct: 343 DADAQDAHEAIRPTSAFRTPASVKEYLTTEEYRLYTLIWSRFIASQMTPAVYDTVRADIE 402
Query: 430 VADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLT 489
D F L GFT V KN +P+ GD + ++ + T PP T
Sbjct: 403 QNDVTFRTTGSKLKFAGFTKVYDNQKEKNNELPELNEGDKVKLKKTDDRQHFTQPPARYT 462
Query: 490 ESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
E+ L+ +E++G+G ++ I+ I +R YV + GR +VPT LG ++
Sbjct: 463 EASLVRALEENGVGRPSTYAPTIDTIQKRYYVKL-EGRSIVPTELGEIV 510
>gi|116629571|ref|YP_814743.1| DNA topoisomerase I [Lactobacillus gasseri ATCC 33323]
gi|311110785|ref|ZP_07712182.1| DNA topoisomerase [Lactobacillus gasseri MV-22]
gi|420147279|ref|ZP_14654555.1| DNA topoisomerase [Lactobacillus gasseri CECT 5714]
gi|116095153|gb|ABJ60305.1| DNA topoisomerase I [Lactobacillus gasseri ATCC 33323]
gi|311065939|gb|EFQ46279.1| DNA topoisomerase [Lactobacillus gasseri MV-22]
gi|398401280|gb|EJN54782.1| DNA topoisomerase [Lactobacillus gasseri CECT 5714]
Length = 693
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 120/469 (25%), Positives = 200/469 (42%), Gaps = 61/469 (13%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L +EAK +++ L D D+EGE I + V H +N++ PK R F+ IT +K A
Sbjct: 73 LKSEAKKAKYVYLASDPDREGEAIAWHVA----HALNLD-PKEHNRVAFNEITKDAVKNA 127
Query: 160 MWNLVKPNIFEARSVDARQE---LDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQT 215
N P + VDA+Q LD +G + + K +G +S G Q+
Sbjct: 128 FKN---PRTIDMDIVDAQQARRVLDRLVGYSISPILWQKVKKG---------LSAGRVQS 175
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTL-----NLNGVAVSVTWSRGHIFDKSTCNVFFK 270
L ++R ++I+ FKPE YW +D G + + + + K
Sbjct: 176 IALKLVIDRENEIKNFKPEEYWTIDADFEKGKEKFKGAFYGIKGKKQDLPNNEAVQDILK 235
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY------ 324
++K K+ V V + + T + + A+ LG M+IA+ LY
Sbjct: 236 QIDKRKNFEVTKVVKKERRRQPAAPFTTSTMQQEANKRLGYRTRRTMRIAQSLYEGVNLG 295
Query: 325 --TQGYVSYPRTETTQYPENFDLVAVLRQQESSP----DWGDHVREVLSNGISKPRKGKD 378
+ G ++Y RT++ + +A + + E+S ++G + + KP+ K+
Sbjct: 296 KGSVGLITYMRTDSKR-------IANVAKHEASKFIHEEYGANYAAI------KPQHFKN 342
Query: 379 VGD----HPPITPTKL-----ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFS 429
D H I PT + + L + +RLY I FI + VY A
Sbjct: 343 DADAQDAHEAIRPTSAFRTPASVKEYLTTEEYRLYTLIWSRFIASQMTPAVYDTVRADIE 402
Query: 430 VADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLT 489
D F L GFT V KN +P+ GD + ++ + T PP T
Sbjct: 403 QNDVTFRTTGSKLKFAGFTKVYDNQKEKNNELPELNEGDKVKLKKTDDRQHFTQPPARYT 462
Query: 490 ESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
E+ L+ +E++G+G ++ I+ I +R YV + GR +VPT LG ++
Sbjct: 463 EASLVRALEENGVGRPSTYAPTIDTIQKRYYVKL-EGRSIVPTELGEIV 510
>gi|282852050|ref|ZP_06261408.1| DNA topoisomerase [Lactobacillus gasseri 224-1]
gi|282556810|gb|EFB62414.1| DNA topoisomerase [Lactobacillus gasseri 224-1]
Length = 646
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 120/469 (25%), Positives = 200/469 (42%), Gaps = 61/469 (13%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L +EAK +++ L D D+EGE I + V H +N++ PK R F+ IT +K A
Sbjct: 26 LKSEAKKAKYVYLASDPDREGEAIAWHVA----HALNLD-PKEHNRVAFNEITKDAVKNA 80
Query: 160 MWNLVKPNIFEARSVDARQE---LDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQT 215
N P + VDA+Q LD +G + + K +G +S G Q+
Sbjct: 81 FKN---PRTIDMDIVDAQQARRVLDRLVGYSISPILWQKVKKG---------LSAGRVQS 128
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTL-----NLNGVAVSVTWSRGHIFDKSTCNVFFK 270
L ++R ++I+ FKPE YW +D G + + + + K
Sbjct: 129 IALKLVIDRENEIKNFKPEEYWTIDADFEKGKEKFKGAFYGIKGKKQDLPNNEAVQDILK 188
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY------ 324
++K K+ V V + + T + + A+ LG M+IA+ LY
Sbjct: 189 QIDKRKNFEVTKVVKKERRRQPAAPFTTSTMQQEANKRLGYRTRRTMRIAQSLYEGVNLG 248
Query: 325 --TQGYVSYPRTETTQYPENFDLVAVLRQQESSP----DWGDHVREVLSNGISKPRKGKD 378
+ G ++Y RT++ + +A + + E+S ++G + + KP+ K+
Sbjct: 249 KGSVGLITYMRTDSKR-------IANVAKHEASKFIHEEYGANYAAI------KPQHFKN 295
Query: 379 VGD----HPPITPTKL-----ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFS 429
D H I PT + + L + +RLY I FI + VY A
Sbjct: 296 DADAQDAHEAIRPTSAFRTPASVKEYLTTEEYRLYTLIWSRFIASQMTPAVYDTVRADIE 355
Query: 430 VADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLT 489
D F L GFT V KN +P+ GD + ++ + T PP T
Sbjct: 356 QNDVTFRTTGSKLKFAGFTKVYDNQKEKNNELPELNEGDKVKLKKTDDRQHFTQPPARYT 415
Query: 490 ESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
E+ L+ +E++G+G ++ I+ I +R YV + GR +VPT LG ++
Sbjct: 416 EASLVRALEENGVGRPSTYAPTIDTIQKRYYVKL-EGRSIVPTELGEIV 463
>gi|220928360|ref|YP_002505269.1| DNA topoisomerase III [Clostridium cellulolyticum H10]
gi|219998688|gb|ACL75289.1| DNA topoisomerase III [Clostridium cellulolyticum H10]
Length = 722
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 140/532 (26%), Positives = 223/532 (41%), Gaps = 67/532 (12%)
Query: 53 MTSVCGHIMGLD----FTSKYNNWDKVDPLELFSCPTEK---REATPKLKLPAFLANEAK 105
+T GH++ L + +KY W+ ++ L + E ++ + + L N A
Sbjct: 38 VTWALGHLVTLADPEAYGNKYKTWN-LEDLPMLPNKMELVVIKQTAKQYGVVRGLLNRA- 95
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
D + LV+ D +EGE + ++ + K + R S+ TDK IK L
Sbjct: 96 DVDELVIATDSGREGELVARWII------MKAGFKKPIKRLWISSQTDKAIKEGFAKLRP 149
Query: 166 PNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVE 223
++ S +R E D IG TR T + + +S G QTPTL VE
Sbjct: 150 SKEYDNLYYSAQSRAEADWLIGLNVTRALTCKYNAQ--------LSAGRVQTPTLAMIVE 201
Query: 224 RHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGH---IFDKSTCNVFFKAVEKEKHVTV 280
R ++IR F+P+ YW ++ NG V SR + F+K + + + V
Sbjct: 202 REEEIRKFRPKDYWT--ISAQFNGFTVQWQDSRNNQTRTFNKEEADGIVAKITGQMG-EV 258
Query: 281 VDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY-TQGYVSYPRTETTQY 339
V+V+ TK + P A + EL R A+ + I +RLY + V+YPRT++
Sbjct: 259 VEVKKETKKELPPLAYDLTELQRDANKKFSYSAKQTLNIMQRLYESHKLVTYPRTDSRYI 318
Query: 340 PENFDLVAVLRQQESSPDWGDH---VREVLSNGISKPRKGKD---VGDHPPITPT-KLAT 392
+ D+V L ++ S G + V+ V+ N S ++ D V DH I PT +
Sbjct: 319 TD--DIVPTLNERLKSIAVGPYAKLVQGVMRNKPSVTKRFVDNSKVTDHHAIIPTEQFVD 376
Query: 393 RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV-- 450
L+ + +YD IV+ FI L Y Q K +A E F + K + G+ V
Sbjct: 377 LFSLNSEERNIYDLIVKRFIAVLSKPFEYEQTTVKLDIAGESFYAKGKIVKSSGWKTVYD 436
Query: 451 ------MTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME------ 498
++S+PD + G + K + KT PP TE+ L+S ME
Sbjct: 437 GFGKLDEDDEDDNDQSLPDIQKGHKAKVVGPKSINGKTKPPARYTEATLLSAMEHPGKFV 496
Query: 499 -----------KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
G+GT A+ I + Y+ G+ + PTS G L+
Sbjct: 497 DNKALKEALESTSGLGTPATRADIIEKLFNTFYIE-RKGKEIYPTSKGTQLI 547
>gi|289423538|ref|ZP_06425339.1| DNA topoisomerase [Peptostreptococcus anaerobius 653-L]
gi|289156040|gb|EFD04704.1| DNA topoisomerase [Peptostreptococcus anaerobius 653-L]
Length = 684
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 121/466 (25%), Positives = 203/466 (43%), Gaps = 55/466 (11%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L EAK + L D D+EGE I + + + + I++ + R F+ IT IK +
Sbjct: 68 LKKEAKKASKVYLATDPDREGEAISWHL----SYILGIDND-SACRIEFNEITKDTIKKS 122
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQ------TKFFQGKYGDLDASLISYGPC 213
+ K N + AR+ LD +G YQ K +G +S G
Sbjct: 123 IKMPRKINHDLVDAQQARRVLDRLLG-----YQISPILWQKVRRG---------LSAGRV 168
Query: 214 QTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-----SRGHIFDKSTCNVF 268
Q+ T +R +I F PE YW L L N++G V ++ + + DK T +
Sbjct: 169 QSVTTKLICDREKEIEAFVPEEYWTLVLVCNIDGTMVEFSFYGNENEKLDLNDKETVDNI 228
Query: 269 FKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-- 326
A+E + + ++++ + + ++ + T +L + A + LG AM+IA+ LY
Sbjct: 229 ISAIESQ-MIKIINIDTKVRKRSAVKPFTTSQLQQEAVNRLGFTTKKAMKIAQELYEGVN 287
Query: 327 -------GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDV 379
G +SY RT++ + + + S ++ + G K K+
Sbjct: 288 VAGEGAVGLISYIRTDSQRLSDE------AKNAAKSFILDEYGEKYYLGGKGKTNSKKNS 341
Query: 380 GD-HPPITPTKLATRT------QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVAD 432
D H I PT L TRT L D ++LYD I R FI + D VY + +A
Sbjct: 342 QDAHEAIRPT-LTTRTPDSIKESLSKDQYKLYDLIWRRFIASQMEDAVYESLSIEADIAG 400
Query: 433 EMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESE 492
F + G+T V ++ +++ +P GDL+ I+ + + T PP TE+
Sbjct: 401 YRFRATGSKQIFDGYTRVYNFTDREDKILPQLNVGDLLKIEDIDPNQHFTKPPARFTEAS 460
Query: 493 LISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
L+ +E+ GIG ++ I I R YV G+ + PT LG+++
Sbjct: 461 LVRTLEELGIGRPSTYAPTIGTILNRGYVE-KEGQSIKPTELGVIV 505
>gi|410457996|ref|ZP_11311761.1| DNA topoisomerase III [Bacillus azotoformans LMG 9581]
gi|409931931|gb|EKN68903.1| DNA topoisomerase III [Bacillus azotoformans LMG 9581]
Length = 731
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 131/491 (26%), Positives = 210/491 (42%), Gaps = 61/491 (12%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEKREATPKLKLP 97
G L GD + +T GH++ L + KY W K++ L + P + + K
Sbjct: 29 GFLEGDQYI--VTWALGHLVTLADPESYDDKYKTW-KLEDLPM--VPKDLKLVVIKQTSK 83
Query: 98 AFLANEAK----DCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAIT 152
F A +++ D +V+ D +EG+ + +++ R +N P K +W S++T
Sbjct: 84 QFHAVKSQLLRSDVGDIVIATDAGREGQLVAQWILDKAR----VNKPTKRLW---ISSVT 136
Query: 153 DKDIKAAMWNLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISY 210
DK IK L F+ S AR E D +G TR T F + +S
Sbjct: 137 DKAIKEGFQRLKNGKEFDPLYHSAVARSEADWYVGLNATRALTCKFNAQ--------LSC 188
Query: 211 GPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-----SRGHIFDKSTC 265
G QTPTL +R ++IR FK +PY+ + N + +TW + F K
Sbjct: 189 GRVQTPTLAIIAKREEEIRQFKAKPYYGIQAQTN---EKIVLTWHERISNDTKTFAKEKA 245
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
+ V K K ++DV K PQ + EL R A+ G +QI ++LY
Sbjct: 246 DEILSKV-KNKQAKIIDVDKKAKKSFAPQLYDLTELQRDANKAFGYSAKETLQIMQKLYE 304
Query: 326 QGYV-SYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKD------ 378
Q V +YPRT++ D+V L+++ + G + +++ + KP KG
Sbjct: 305 QHKVLTYPRTDSRYLSS--DIVDTLKERVKACGVGPY-KQLAHKLLQKPIKGNSSFVNDS 361
Query: 379 -VGDHPPITPTKLATRTQLDGDAWR-LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFT 436
V DH I PT+ D R +Y+ +V+ F+ L Y Q K +A E F
Sbjct: 362 KVSDHHAIIPTEETVFLNKFTDKERKIYNLVVKRFLAVLYPAFEYEQTTIKADIAGETFV 421
Query: 437 MEAKYLLHPGFTGVMT---------WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDY 487
+ K +L G+ V + +K++ +P GD + I V + +T PP
Sbjct: 422 AKGKRVLSSGWKEVYENRFDDEEDGVNEVKDQLLPSVANGDALTISGVIQTKGETKPPTR 481
Query: 488 LTESELISLME 498
E+ L+S ME
Sbjct: 482 FNEASLLSAME 492
>gi|422810793|ref|ZP_16859204.1| DNA topoisomerase III [Listeria monocytogenes FSL J1-208]
gi|378750998|gb|EHY61589.1| DNA topoisomerase III [Listeria monocytogenes FSL J1-208]
Length = 717
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 121/467 (25%), Positives = 206/467 (44%), Gaps = 45/467 (9%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVD----PLELFSCPTEKREATPKLKLPAFLAN 102
+ +T GH++ L + SKY NW+ D P ++ P ++ + + L N
Sbjct: 36 YVVTWALGHLVTLADPERYDSKYKNWNMEDLPMLPEKMKLEPI--KQTRKQYETVKKLMN 93
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMW 161
D +V+ D +EGE + +++ + I P K +W S++TDK I+
Sbjct: 94 RT-DITTIVIATDAGREGELVARWIIDYAK----IKKPLKRLW---ISSVTDKAIREGFE 145
Query: 162 NLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
+L +E S AR E D +G TR T + + +S G QTPTL
Sbjct: 146 HLKPGKAYENLYHSAVARSEADWVVGINATRALTTKYNAQ--------LSCGRVQTPTLA 197
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
R ++IR FKP Y+ + S TW+ G FDK+ K+++ E V
Sbjct: 198 MIQHREEEIRNFKPREYYGITALTEQE----SFTWNNGQTFDKALAEKLVKSLQGENAV- 252
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQ 338
+ DV K P + EL R A++ + I + LY + V +YPRT++
Sbjct: 253 ITDVSMKEKKNFSPGLYDLTELQRDANNRYDFSAKETLNIMQTLYERHKVLTYPRTDSRF 312
Query: 339 YPENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTKL-A 391
+ D+V L+++ ++ G++ R++ I + D V DH I PT+
Sbjct: 313 I--STDIVPTLKERLAACGVGENAKAARQISGKPIKANKSFVDNSKVSDHHAIIPTEQPV 370
Query: 392 TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
+ L ++YD +V+ F+ L +Y + K + E FT++ K + G+ +
Sbjct: 371 SLGDLSDKERKIYDLVVKRFLAVLSDPYIYEETSVKAKIGQEEFTLKGKVVKSLGWKSIY 430
Query: 452 TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
S ++ + K GD IP++ + + KT PP E+ L+S ME
Sbjct: 431 GESREPDQ-LTKMKKGDTIPVKRINLETGKTKPPARFNEATLLSAME 476
>gi|440738735|ref|ZP_20918261.1| DNA topoisomerase I subunit omega [Pseudomonas fluorescens
BRIP34879]
gi|440380840|gb|ELQ17397.1| DNA topoisomerase I subunit omega [Pseudomonas fluorescens
BRIP34879]
Length = 873
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 128/449 (28%), Positives = 194/449 (43%), Gaps = 32/449 (7%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
AKD + + L D D+EGE I + + EA+ R F+ IT K I+ A
Sbjct: 107 AKDADTIYLATDLDREGEAIAWHLREAIG-----GDDSRYKRVVFNEITKKAIQEAFSRP 161
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
+ +I + AR+ LD +G + K +G +S G Q+ + V
Sbjct: 162 GELDIDRVNAQQARRFLDRVVGYMVSPLLWAKIARG---------LSAGRVQSVAVKLVV 212
Query: 223 ERHDKIRTFKPEPYWLL--DL-TLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
ER +IR F PE YW + DL T N V V +G F A+EK K +
Sbjct: 213 EREREIRAFNPEEYWEVHADLGTAKGNNVRFEVAREKGEAFKPLNEAQAMAALEKLKASS 272
Query: 280 VVDVQSSTK-SKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V+ K + +KP A T L + AS+ LG G M +A+RLY GY++Y RT++T
Sbjct: 273 YSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDST 332
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR-TQL 396
+ D VA+ R S ++G N S ++ H I P+ T ++L
Sbjct: 333 NLSQ--DAVAMARTYIES-EFGKKYLPEKPNVYSSKEGAQEA--HEAIRPSDANTEPSKL 387
Query: 397 DG---DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
G DA RLY+ I R F+ Y D + + L G+T VM
Sbjct: 388 SGMERDAERLYELIWRQFLACQMLPAQYLSTTVSVGAGDFELRAKGRILKFDGYTRVMPQ 447
Query: 454 SAM--KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
A ++ +PD GD + + + + T PP +E+ L+ MEK GIG ++
Sbjct: 448 IAKPGDDDVLPDMAQGDTLKLIKLDPSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAI 507
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLVH 540
I+ I R YV + + RR +G ++
Sbjct: 508 ISTIQDRGYVALHN-RRFYSEKMGDIVTE 535
>gi|315645228|ref|ZP_07898353.1| DNA topoisomerase III [Paenibacillus vortex V453]
gi|315279270|gb|EFU42576.1| DNA topoisomerase III [Paenibacillus vortex V453]
Length = 711
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 142/540 (26%), Positives = 220/540 (40%), Gaps = 65/540 (12%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEKR-----EATPKLKLPAFLA 101
+ +T GH++GL D+ KY W D L P R E + + K L
Sbjct: 35 YIVTWALGHLVGLAEPEDYDKKYQTWVLED---LPILPDNTRLKVLKETSHQFKTVQHLM 91
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAM 160
+D +++ D +EGE + +++ + N P K +W S+ TDK IK
Sbjct: 92 KR-QDVGEMIIATDAAREGELLARWILKMAK----WNKPFKRLW---ISSQTDKAIKEGF 143
Query: 161 WNLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTL 218
+L F+ S R E D +G TR T F + +S G QTPTL
Sbjct: 144 ASLKPGQQFDRLYESARCRAEADWMVGLNVTRALTTKFNAQ--------LSAGRVQTPTL 195
Query: 219 GFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHV 278
G ++R +I F+ + Y L L V+ G +F+K +E
Sbjct: 196 GMIMDREKEIVHFRSQEYETLQADLGSFEVSWRPAGGDGRLFEKDKAAKLKSKLEGSTG- 254
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETT 337
+ V+ S K++ P A + EL R A+ G + +RLY Q V+YPRT++
Sbjct: 255 KITSVKKSEKNEPHPLAYDLTELQRDANRRFGFSAKQTSNVLQRLYEQHKLVTYPRTDSR 314
Query: 338 QYPENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTKLA 391
D+V L+++ SS G + R +L IS ++ D V DH I PT+
Sbjct: 315 YL--TSDMVGTLKERLSSIAIGPYASLARPLLRKNISPGKRVVDDSKVTDHHAIIPTEQT 372
Query: 392 TR-TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
QL D +LYD IVR FI Y + E+ + + G+ V
Sbjct: 373 VLLNQLSVDERKLYDLIVRRFISLFYPPARYDNVSVTVQIEGELLYAKGTTIKDSGWREV 432
Query: 451 M--------------TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISL 496
A + +P+ K G+ + + + +T PP E+ L+S
Sbjct: 433 YGGDYDDDGDDEPEDAQGASSGKLLPELKEGETVKVVRCVLKPGRTQPPKRYNEAALLSQ 492
Query: 497 MEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
MEKHG+GT A+ I + + + G+ L PT G L+ ELV P +R+
Sbjct: 493 MEKHGLGTPATRADIIEKLVSSDTIE-RQGQSLHPTGKGKQLI--------ELVAPELRT 543
>gi|254975866|ref|ZP_05272338.1| DNA topoisomerase III [Clostridium difficile QCD-66c26]
gi|255314995|ref|ZP_05356578.1| DNA topoisomerase III [Clostridium difficile QCD-76w55]
gi|255517670|ref|ZP_05385346.1| DNA topoisomerase III [Clostridium difficile QCD-97b34]
gi|255650780|ref|ZP_05397682.1| DNA topoisomerase III [Clostridium difficile QCD-37x79]
gi|260683865|ref|YP_003215150.1| DNA topoisomerase III [Clostridium difficile CD196]
gi|260687525|ref|YP_003218659.1| DNA topoisomerase III [Clostridium difficile R20291]
gi|306520683|ref|ZP_07407030.1| DNA topoisomerase III [Clostridium difficile QCD-32g58]
gi|384361497|ref|YP_006199349.1| DNA topoisomerase III [Clostridium difficile BI1]
gi|260210028|emb|CBA64083.1| putative DNA topoisomerase [Clostridium difficile CD196]
gi|260213542|emb|CBE05286.1| putative DNA topoisomerase [Clostridium difficile R20291]
Length = 706
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 114/420 (27%), Positives = 190/420 (45%), Gaps = 37/420 (8%)
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
D + +V+ D +EGE + ++E + Q+ K + R S+ TDK IK L
Sbjct: 96 DIDEIVIATDAGREGELVARWIIE--KSQV----KKPIKRLWISSSTDKAIKDGFAKLRS 149
Query: 166 PNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVE 223
+E S AR E D IG TR T + + +S G QTPTL ++
Sbjct: 150 GKEYENLYYSAIARAEADWIIGINATRALTTKYNAQ--------LSCGRVQTPTLAMLLK 201
Query: 224 RHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWS----RGHIFDKSTCNVFFKAVEKEKHVT 279
R ++IR FKP+ Y+ L+L + W+ F K K V K +
Sbjct: 202 REEEIRNFKPKEYYGLELIATKGNSDIKFIWNDKNNNSSTFSKEKIESILKKV-KGVDIK 260
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQ 338
+ +V S K K P + EL R A+ G + I ++LY V +YPRT++
Sbjct: 261 ISEVNKSYKKKYSPALYDLTELQRDANKMFGFSAKETLSIMQKLYEHHKVLTYPRTDSRY 320
Query: 339 YPENFDLVAVLRQQESSPDWGDHVR---EVLSNGISKPRKGKD---VGDHPPITPTKLAT 392
D+V L+ + + + D+ + ++L + I + D V DH I PT+
Sbjct: 321 LTS--DIVGTLKDRIKAVNISDYSKICNKLLKSNIIANKSFVDNSKVTDHHAIIPTEQKV 378
Query: 393 RTQLDGDAWR-LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
D R +Y+ +V+ F+ L Y Q +V E+F + +++ G+
Sbjct: 379 FMSDFSDKERKIYNLVVKRFLAVLSPPFEYEQTTISATVEGEIFKAKGNKVINLGWK--E 436
Query: 452 TWSAMKNE----SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDAS 507
++ +++E SIP+ D++ ++ +K+ KT PP YL E L++ MEK+G+GT A+
Sbjct: 437 SYKDIEDEDEYESIPNVLEKDVLKVKGLKITSGKTNPPPYLNEGTLLTAMEKNGLGTVAT 496
>gi|447915863|ref|YP_007396431.1| DNA topoisomerase I subunit omega [Pseudomonas poae RE*1-1-14]
gi|445199726|gb|AGE24935.1| DNA topoisomerase I subunit omega [Pseudomonas poae RE*1-1-14]
Length = 873
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 128/449 (28%), Positives = 195/449 (43%), Gaps = 32/449 (7%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
AKD + + L D D+EGE I + + EA+ R F+ IT K I+ A
Sbjct: 107 AKDADTIYLATDLDREGEAIAWHLREAIG-----GDDSRYKRVVFNEITKKAIQEAFSRP 161
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
+ +I + AR+ LD +G + K +G +S G Q+ + V
Sbjct: 162 GELDIDRVNAQQARRFLDRVVGYMVSPLLWAKIARG---------LSAGRVQSVAVKLVV 212
Query: 223 ERHDKIRTFKPEPYWLL--DL-TLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
ER +IR F PE YW + DL T N V V +G F A+EK K +
Sbjct: 213 EREREIRAFNPEEYWEVHADLGTAKGNTVRFEVAREKGEAFKPLNEAQAMAALEKLKASS 272
Query: 280 VVDVQSSTK-SKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V+ K + +KP A T L + AS+ LG G M +A+RLY GY++Y RT++T
Sbjct: 273 YSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDST 332
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR-TQL 396
+ D VA+ R S ++G + N S ++ H I P+ T ++L
Sbjct: 333 NLSQ--DAVAMARTYIES-EFGKNYLPEKPNVYSSKEGAQEA--HEAIRPSDANTEPSKL 387
Query: 397 DG---DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
G DA RLY+ I R F+ Y D + + L G+T VM
Sbjct: 388 SGMERDAERLYELIWRQFLACQMLPAQYLSTTVSVGAGDFELRAKGRILKFDGYTRVMPQ 447
Query: 454 SAM--KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
A ++ +PD GD + + + + T PP +E+ L+ MEK GIG ++
Sbjct: 448 IAKPGDDDVLPDMAQGDTLKLIKLDPSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAI 507
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLVH 540
I+ I R YV + + RR +G ++
Sbjct: 508 ISTIQDRGYVALHN-RRFYSEKMGDIVTE 535
>gi|340356105|ref|ZP_08678770.1| DNA topoisomerase TopB [Sporosarcina newyorkensis 2681]
gi|339621735|gb|EGQ26277.1| DNA topoisomerase TopB [Sporosarcina newyorkensis 2681]
Length = 731
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 132/493 (26%), Positives = 215/493 (43%), Gaps = 66/493 (13%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEKREATPKLKLP 97
G L GD + +T GH++ L ++ +KY W K++ L + P + K
Sbjct: 29 GYLEGDKYI--VTWALGHLVTLADPENYDTKYKTW-KLEDLPMM--PDHLKLTVIKQTGK 83
Query: 98 AFLANEAK----DCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAIT 152
+ A +++ D +++ D +EGE + ++E + +N P K +W S++T
Sbjct: 84 QYNAVKSQLLRSDVSDIIIGTDAGREGELVARWIIEKAK----VNKPIKRLW---ISSVT 136
Query: 153 DKDIKAAMWNLVKP-----NIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
DK IK L KP N++EA AR E D IG TR T F +
Sbjct: 137 DKAIKDGFAQL-KPGKAYENLYEA--AVARSEADWYIGLNATRALTTKFNAQ-------- 185
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHI-----FDK 262
++ G QTP + +R ++I TF+P+ Y+ ++ + + +TW FD+
Sbjct: 186 LNCGRVQTPVVAIIAQREEEINTFRPKTYYGIEAQTD---SKLKLTWQDAKTNDTRSFDR 242
Query: 263 STCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAER 322
+ K V+ K + +V K P + EL R A+ G + I ++
Sbjct: 243 EKLSTIVKKVDG-KQAIIENVDKKAKKSFSPGLYDLTELQRDANKLFGYSAKETLNIMQK 301
Query: 323 LYTQ-GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKD--- 378
LY Q ++YPRT++ D+VA L ++ S G++ R + + + KP K
Sbjct: 302 LYEQHKLLTYPRTDSRFLSS--DIVATLPERLKSCGIGEY-RSLANKILKKPIKANKSFV 358
Query: 379 ----VGDHPPITPTK-LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADE 433
V DH I PT+ + R +L ++YD +V+ F+ L Y Q +ADE
Sbjct: 359 DDSKVSDHHAIIPTEEIVLRDKLSDKERKIYDLVVKRFMAVLFPAHEYEQLTIHAKIADE 418
Query: 434 MFTMEAKYLLHPGFTGVMT--------WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPP 485
FT K +L PG+ V K + +P GD + IQ VK +T PP
Sbjct: 419 RFTARGKTILVPGWKEVYNNQFDEEEAEQDTKEQLLPKLSKGDSLSIQFVKETSGQTKPP 478
Query: 486 DYLTESELISLME 498
E+ L+S ME
Sbjct: 479 ARFNEATLLSAME 491
>gi|329926148|ref|ZP_08280739.1| DNA topoisomerase [Paenibacillus sp. HGF5]
gi|328939422|gb|EGG35776.1| DNA topoisomerase [Paenibacillus sp. HGF5]
Length = 712
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 141/541 (26%), Positives = 221/541 (40%), Gaps = 66/541 (12%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEKR-----EATPKLKLPAFLA 101
+ +T GH++GL D+ KY W D L P R E + + K L
Sbjct: 35 YIVTWALGHLVGLAEPEDYDKKYQTWALED---LPILPDNTRLKVLKETSHQFKTVQHLM 91
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAM 160
+ D +++ D +EGE + +++ + N P K +W S+ TDK IK
Sbjct: 92 KRS-DVGEMIIATDAAREGELLARWILKMAK----WNKPFKRLW---ISSQTDKAIKEGF 143
Query: 161 WNLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTL 218
+L F+ S R E D +G TR T F + +S G QTPTL
Sbjct: 144 ASLKPGQQFDRLYESARCRAEADWMVGLNVTRALTTKFNAQ--------LSAGRVQTPTL 195
Query: 219 GFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHV 278
G ++R +I F+ + Y L L V+ G +F+K + +E
Sbjct: 196 GMIMDREKEIVNFRSQEYETLQADLGSFEVSWRPAGGDGRLFEKDKAAKLKQKLEGSTG- 254
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETT 337
+V V+ S K++ P A + EL R A+ G + +RLY Q V+YPRT++
Sbjct: 255 KIVSVKKSEKTEPHPLAYDLTELQRDANRRFGFSAKQTSNVLQRLYEQHKLVTYPRTDSR 314
Query: 338 QYPENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTKLA 391
D+V L+++ SS G + R +L +S ++ D V DH I PT+
Sbjct: 315 YL--TSDMVGTLKERLSSIAIGPYASIARPLLRKNLSPGKRVVDDSKVTDHHAIIPTEQT 372
Query: 392 TR-TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
QL D +LYD IVR FI Y + E + + G+ V
Sbjct: 373 VLLNQLSVDERKLYDLIVRRFISLFYPPARYDNVAVTVQIEGEQLYAKGTTIKESGWREV 432
Query: 451 MTWS---------------AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELIS 495
+ + +P+ K G+ + + + +T PP E+ L+S
Sbjct: 433 YGGDYEDDTDDESDEGQGPSSSGKLLPELKEGESVKVVRCVLKPGRTQPPKRYNEAALLS 492
Query: 496 LMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMR 555
MEKHG+GT A+ I + + + G+ L PT G L+ ELV P +R
Sbjct: 493 QMEKHGLGTPATRADIIEKLVSSDTIE-RQGQTLHPTGKGKQLI--------ELVAPELR 543
Query: 556 S 556
+
Sbjct: 544 T 544
>gi|254824879|ref|ZP_05229880.1| DNA topoisomerase III [Listeria monocytogenes FSL J1-194]
gi|254930971|ref|ZP_05264330.1| DNA topoisomerase III [Listeria monocytogenes HPB2262]
gi|405751103|ref|YP_006674569.1| DNA topoisomerase III [Listeria monocytogenes ATCC 19117]
gi|424824507|ref|ZP_18249520.1| DNA topoisomerase 3 [Listeria monocytogenes str. Scott A]
gi|293582517|gb|EFF94549.1| DNA topoisomerase III [Listeria monocytogenes HPB2262]
gi|293594119|gb|EFG01880.1| DNA topoisomerase III [Listeria monocytogenes FSL J1-194]
gi|332313187|gb|EGJ26282.1| DNA topoisomerase 3 [Listeria monocytogenes str. Scott A]
gi|404220303|emb|CBY71667.1| DNA topoisomerase III [Listeria monocytogenes ATCC 19117]
Length = 717
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 121/467 (25%), Positives = 206/467 (44%), Gaps = 45/467 (9%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVD----PLELFSCPTEKREATPKLKLPAFLAN 102
+ +T GH++ L + SKY NW+ D P ++ P ++ + + L N
Sbjct: 36 YVVTWALGHLVTLADPERYDSKYKNWNMEDLPMLPEKMKLEPI--KQTRKQYETVKKLMN 93
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMW 161
D +V+ D +EGE + +++ + I P K +W S++TDK I+
Sbjct: 94 RT-DITTIVIATDAGREGELVARWIIDYAK----IKKPLKRLW---ISSVTDKAIREGFE 145
Query: 162 NLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
+L +E S AR E D +G TR T + + +S G QTPTL
Sbjct: 146 HLKPGKAYENLYHSAVARSEADWVVGINATRALTTKYNAQ--------LSCGRVQTPTLA 197
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
R ++IR FKP Y+ + S TW+ G FDK+ K+++ E V
Sbjct: 198 MIQHREEEIRNFKPREYYGITALTEQE----SFTWNNGQTFDKALAEKLVKSLQGENAV- 252
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQ 338
+ DV K P + EL R A++ + I + LY + V +YPRT++
Sbjct: 253 ITDVSMKEKKNFSPGLYDLTELQRDANNRYDFSAKETLNIMQTLYERHKVLTYPRTDSRF 312
Query: 339 YPENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTKL-A 391
+ D+V L+++ ++ G++ R++ I + D V DH I PT+
Sbjct: 313 I--STDIVPTLKERLAACGVGENAKAARQISGKPIKANKSFVDNSKVSDHHAIIPTEQPV 370
Query: 392 TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
+ L ++YD +V+ F+ L +Y + K + E FT++ K + G+ +
Sbjct: 371 SLGDLSDKERKIYDLVVKRFLAVLSDPYIYEETSVKAKIGQEEFTLKGKVVKSLGWKSIY 430
Query: 452 TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
S ++ + K GD IP++ + + KT PP E+ L+S ME
Sbjct: 431 GESREPDQ-LTKMKKGDTIPVKRINLETGKTKPPARFNEATLLSAME 476
>gi|226225308|ref|YP_002759415.1| DNA topoisomerase III [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|386733457|ref|YP_006206953.1| DNA topoisomerase III [Listeria monocytogenes 07PF0776]
gi|406705499|ref|YP_006755853.1| DNA topoisomerase III [Listeria monocytogenes L312]
gi|225877770|emb|CAS06485.1| Putative DNA topoisomerase III [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|384392215|gb|AFH81285.1| DNA topoisomerase III [Listeria monocytogenes 07PF0776]
gi|406362529|emb|CBY68802.1| DNA topoisomerase III [Listeria monocytogenes L312]
Length = 717
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 121/467 (25%), Positives = 206/467 (44%), Gaps = 45/467 (9%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVD----PLELFSCPTEKREATPKLKLPAFLAN 102
+ +T GH++ L + SKY NW+ D P ++ P ++ + + L N
Sbjct: 36 YVVTWALGHLVTLADPERYDSKYKNWNMEDLPMLPEKMKLEPI--KQTRKQYETVKKLMN 93
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMW 161
D +V+ D +EGE + +++ + I P K +W S++TDK I+
Sbjct: 94 RT-DITTIVIATDAGREGELVARWIIDYAK----IKKPLKRLW---ISSVTDKAIREGFE 145
Query: 162 NLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
+L +E S AR E D +G TR T + + +S G QTPTL
Sbjct: 146 HLKPGKAYENLYHSAVARSEADWVVGINATRALTTKYNAQ--------LSCGRVQTPTLA 197
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
R ++IR FKP Y+ + S TW+ G FDK+ K+++ E V
Sbjct: 198 MIQHREEEIRNFKPREYYGITALTEQE----SFTWNNGQTFDKALAEKLVKSLQGENAV- 252
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQ 338
+ DV K P + EL R A++ + I + LY + V +YPRT++
Sbjct: 253 ITDVSMKEKKNFSPGLYDLTELQRDANNRYDFSAKETLNIMQTLYERHKVLTYPRTDSRF 312
Query: 339 YPENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTKL-A 391
+ D+V L+++ ++ G++ R++ I + D V DH I PT+
Sbjct: 313 I--STDIVPTLKERLAACGVGENAKAARQISGKPIKANKSFVDNSKVSDHHAIIPTEQPV 370
Query: 392 TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
+ L ++YD +V+ F+ L +Y + K + E FT++ K + G+ +
Sbjct: 371 SLGDLSDKERKIYDLVVKRFLAVLSDPYIYEETSVKAKIGQEEFTLKGKVVKSLGWKSIY 430
Query: 452 TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
S ++ + K GD IP++ + + KT PP E+ L+S ME
Sbjct: 431 GESREPDQ-LTKMKKGDTIPVKRINLETGKTKPPARFNEATLLSAME 476
>gi|255520020|ref|ZP_05387257.1| DNA topoisomerase III [Listeria monocytogenes FSL J1-175]
Length = 717
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 121/467 (25%), Positives = 206/467 (44%), Gaps = 45/467 (9%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVD----PLELFSCPTEKREATPKLKLPAFLAN 102
+ +T GH++ L + SKY NW+ D P ++ P ++ + + L N
Sbjct: 36 YVVTWALGHLVTLADPERYDSKYKNWNMEDLPMLPEKMKLEPI--KQTRKQYETVKKLMN 93
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMW 161
D +V+ D +EGE + +++ + I P K +W S++TDK I+
Sbjct: 94 RT-DITTIVIATDAGREGELVARWIIDYAK----IKKPLKRLW---ISSVTDKAIREGFE 145
Query: 162 NLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
+L +E S AR E D +G TR T + + +S G QTPTL
Sbjct: 146 HLKPGKAYENLYHSAVARSEADWVVGINATRALTTKYNAQ--------LSCGRVQTPTLA 197
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
R ++IR FKP Y+ + S TW+ G FDK+ K+++ E V
Sbjct: 198 MIQHREEEIRNFKPREYYGITALTEQE----SFTWNNGQTFDKALAEKLVKSLQGENAV- 252
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQ 338
+ DV K P + EL R A++ + I + LY + V +YPRT++
Sbjct: 253 ITDVSMKEKKNFSPGLYDLTELQRDANNRYDFSAKETLNIMQTLYERHKVLTYPRTDSRF 312
Query: 339 YPENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTKL-A 391
+ D+V L+++ ++ G++ R++ I + D V DH I PT+
Sbjct: 313 I--STDIVPTLKERLAACGVGENAKAARQISGKPIKANKSFVDNSKVSDHHAIIPTEQPV 370
Query: 392 TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
+ L ++YD +V+ F+ L +Y + K + E FT++ K + G+ +
Sbjct: 371 SLGDLSDKERKIYDLVVKRFLAVLSDPYIYEETSVKAKIGQEEFTLKGKVVKSLGWKSIY 430
Query: 452 TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
S ++ + K GD IP++ + + KT PP E+ L+S ME
Sbjct: 431 GESREPDQ-LTKMKKGDTIPVKRINLETGKTKPPARFNEATLLSAME 476
>gi|404282331|ref|YP_006683229.1| DNA topoisomerase III [Listeria monocytogenes SLCC2755]
gi|404288145|ref|YP_006694731.1| DNA topoisomerase III [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405756888|ref|YP_006680352.1| DNA topoisomerase III [Listeria monocytogenes SLCC2540]
gi|404226088|emb|CBY77450.1| DNA topoisomerase III [Listeria monocytogenes SLCC2540]
gi|404228966|emb|CBY50371.1| DNA topoisomerase III [Listeria monocytogenes SLCC2755]
gi|404247074|emb|CBY05299.1| DNA topoisomerase III [Listeria monocytogenes serotype 7 str.
SLCC2482]
Length = 717
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 121/467 (25%), Positives = 206/467 (44%), Gaps = 45/467 (9%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVD----PLELFSCPTEKREATPKLKLPAFLAN 102
+ +T GH++ L + SKY NW+ D P ++ P ++ + + L N
Sbjct: 36 YVVTWALGHLVTLADPERYDSKYKNWNMEDLPMLPEKMKLEPI--KQTRKQYETVKKLMN 93
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMW 161
D +V+ D +EGE + +++ + I P K +W S++TDK I+
Sbjct: 94 RT-DITTIVIATDAGREGELVARWIIDYAK----IKKPLKRLW---ISSVTDKAIREGFE 145
Query: 162 NLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
+L +E S AR E D +G TR T + + +S G QTPTL
Sbjct: 146 HLKPGKAYENLYHSAVARSEADWVVGINATRALTTKYNAQ--------LSCGRVQTPTLA 197
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
R ++IR FKP Y+ + S TW+ G FDK+ K+++ E V
Sbjct: 198 MIQHREEEIRNFKPREYYGITALTEQE----SFTWNNGQTFDKALAEKLVKSLQGENAV- 252
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQ 338
+ DV K P + EL R A++ + I + LY + V +YPRT++
Sbjct: 253 ITDVSMKEKKNFSPGLYDLTELQRDANNRYDFSAKETLNIMQTLYERHKVLTYPRTDSRF 312
Query: 339 YPENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTKL-A 391
+ D+V L+++ ++ G++ R++ I + D V DH I PT+
Sbjct: 313 I--STDIVPTLKERLAACGVGENAKAARQISGKPIKANKSFVDNSKVSDHHAIIPTEQPV 370
Query: 392 TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
+ L ++YD +V+ F+ L +Y + K + E FT++ K + G+ +
Sbjct: 371 SLGDLSDKERKIYDLVVKRFLAVLSDPYIYEETSVKAKIGQEEFTLKGKVVKSLGWKSIY 430
Query: 452 TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
S ++ + K GD IP++ + + KT PP E+ L+S ME
Sbjct: 431 GESREPDQ-LTKMKKGDTIPVKRINLETGKTKPPARFNEATLLSAME 476
>gi|405753976|ref|YP_006677441.1| DNA topoisomerase III [Listeria monocytogenes SLCC2378]
gi|424715582|ref|YP_007016297.1| DNA topoisomerase 3 [Listeria monocytogenes serotype 4b str. LL195]
gi|404223176|emb|CBY74539.1| DNA topoisomerase III [Listeria monocytogenes SLCC2378]
gi|424014766|emb|CCO65306.1| DNA topoisomerase 3 [Listeria monocytogenes serotype 4b str. LL195]
Length = 717
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 121/467 (25%), Positives = 206/467 (44%), Gaps = 45/467 (9%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVD----PLELFSCPTEKREATPKLKLPAFLAN 102
+ +T GH++ L + SKY NW+ D P ++ P ++ + + L N
Sbjct: 36 YVVTWALGHLVTLADPERYDSKYKNWNMEDLPMLPEKMKLEPI--KQTRKQYETVKKLMN 93
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMW 161
D +V+ D +EGE + +++ + I P K +W S++TDK I+
Sbjct: 94 RT-DITTIVIATDAGREGELVARWIIDYAK----IKKPLKRLW---ISSVTDKAIREGFE 145
Query: 162 NLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
+L +E S AR E D +G TR T + + +S G QTPTL
Sbjct: 146 HLKPGKAYENLYHSAVARSEADWVVGINATRALTTKYNAQ--------LSCGRVQTPTLA 197
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
R ++IR FKP Y+ + S TW+ G FDK+ K+++ E V
Sbjct: 198 MIQHREEEIRNFKPREYYGITALTEQE----SFTWNNGQTFDKALAEKLVKSLQGENAV- 252
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQ 338
+ DV K P + EL R A++ + I + LY + V +YPRT++
Sbjct: 253 ITDVSMKEKKNFSPGLYDLTELQRDANNRYDFSAKETLNIMQTLYERHKVLTYPRTDSRF 312
Query: 339 YPENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTKL-A 391
+ D+V L+++ ++ G++ R++ I + D V DH I PT+
Sbjct: 313 I--STDIVPTLKERLAACGVGENAKAARQISGKPIKANKSFVDNSKVSDHHAIIPTEQPV 370
Query: 392 TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
+ L ++YD +V+ F+ L +Y + K + E FT++ K + G+ +
Sbjct: 371 SLGDLSDKERKIYDLVVKRFLAVLSDPYIYEETSVKAKIGQEEFTLKGKVVKSLGWKSIY 430
Query: 452 TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
S ++ + K GD IP++ + + KT PP E+ L+S ME
Sbjct: 431 GESREPDQ-LTKMKKGDTIPVKRINLETGKTKPPARFNEATLLSAME 476
>gi|47092646|ref|ZP_00230433.1| DNA topoisomerase III [Listeria monocytogenes str. 4b H7858]
gi|47018941|gb|EAL09687.1| DNA topoisomerase III [Listeria monocytogenes str. 4b H7858]
Length = 717
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 121/467 (25%), Positives = 206/467 (44%), Gaps = 45/467 (9%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVD----PLELFSCPTEKREATPKLKLPAFLAN 102
+ +T GH++ L + SKY NW+ D P ++ P ++ + + L N
Sbjct: 36 YVVTWALGHLVTLADPERYDSKYKNWNMEDLPMLPEKMKLEPI--KQTRKQYETVKKLMN 93
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMW 161
D +V+ D +EGE + +++ + I P K +W S++TDK I+
Sbjct: 94 RT-DITTIVIATDAGREGELVARWIIDYAK----IKKPLKRLW---ISSVTDKAIREGFE 145
Query: 162 NLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
+L +E S AR E D +G TR T + + +S G QTPTL
Sbjct: 146 HLKPGKAYENLYHSAVARSEADWVVGINATRALTTKYNAQ--------LSCGRVQTPTLA 197
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
R ++IR FKP Y+ + S TW+ G FDK+ K+++ E V
Sbjct: 198 MIQHREEEIRNFKPREYYGITALTEQE----SFTWNNGQTFDKALAEKLVKSLQGENAV- 252
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQ 338
+ DV K P + EL R A++ + I + LY + V +YPRT++
Sbjct: 253 ITDVSMKEKKNFSPGLYDLTELQRDANNRYDFSAKETLNIMQTLYERHKVLTYPRTDSRF 312
Query: 339 YPENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTKL-A 391
+ D+V L+++ ++ G++ R++ I + D V DH I PT+
Sbjct: 313 I--STDIVPTLKERLAACGVGENAKAARQISGKPIKANKSFVDNSKVSDHHAIIPTEQPV 370
Query: 392 TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
+ L ++YD +V+ F+ L +Y + K + E FT++ K + G+ +
Sbjct: 371 SLGDLSDKERKIYDLVVKRFLAVLSDPYIYEETSVKAKIGQEEFTLKGKVVKSLGWKSIY 430
Query: 452 TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
S ++ + K GD IP++ + + KT PP E+ L+S ME
Sbjct: 431 GESREPDQ-LTKMKKGDTIPVKRINLETGKTKPPARFNEATLLSAME 476
>gi|335427516|ref|ZP_08554447.1| DNA topoisomerase III [Haloplasma contractile SSD-17B]
gi|334895189|gb|EGM33369.1| DNA topoisomerase III [Haloplasma contractile SSD-17B]
Length = 723
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 146/565 (25%), Positives = 242/565 (42%), Gaps = 84/565 (14%)
Query: 6 KKLVPASEIKLARPSLISLLTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGL-- 63
K LV A + +AR L +L ++ NG +++ +T GH++ L
Sbjct: 3 KTLVLAEKPSVAR-DLARVLKCNKKNNGYIEGSKYI-----------VTWALGHLVTLAG 50
Query: 64 --DFTSKYNNWD--------KVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLW 113
+ +Y +W K + LE+ T K+ T K +L NE +V+
Sbjct: 51 PGSYNEQYKSWRIEDLPIIPKHEKLEVIK-KTSKQFKTVKSQLNRNDVNE------IVIA 103
Query: 114 LDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKP----NIF 169
D +EGE + ++E ++ K + R S++TD+ IK NL N++
Sbjct: 104 TDAGREGELVARWILEKA------HTKKQIKRLWISSVTDRAIKDGFNNLKDGKQYYNLY 157
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 229
A AR + D +G TR T F + +S G QTPTL R D IR
Sbjct: 158 MA--AVARSQADWVVGINATRALTCKFNAE--------LSCGRVQTPTLALIKAREDDIR 207
Query: 230 TFKPEPYWLLDLTLNLNGVAVSVTWS-----RGHIFDKSTCNVFFKAVEKEKHVTVVDVQ 284
FKP+ Y+ LT NG +TW+ + + F+K + + K H TVVD++
Sbjct: 208 NFKPKTYY--GLTALTNGF--KLTWTDTKSNQKNSFNKDKIEQIYNKI-KHDHATVVDIK 262
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETTQYPENF 343
+ K P+ + EL R AS+ G + I + LY + ++YPRT++
Sbjct: 263 KTVKKSYSPKLYDLTELQRDASNRYGFSAKETLSIMQTLYERHKLLTYPRTDSRYITT-- 320
Query: 344 DLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKD------VGDHPPITPT-KLATRTQL 396
D+V L+++ + G + L+N I+ + K V DH I PT + ++L
Sbjct: 321 DMVPTLKERVDAIAIGQY--RSLANKINHIKSNKSFVDNKKVSDHHAIIPTEERVNLSKL 378
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM 456
++YD +++ F+ L Y Q S+ +E F + K ++ G+ +
Sbjct: 379 SDRELKIYDLVIKRFMAVLYPPATYEQITLITSIKNEPFIAKGKRMIDYGWKDIYDRHED 438
Query: 457 K---NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK-HGIGTDASIPVHI 512
NE IP+ GD +P+ V + +T PP E+ L+S ME H + I
Sbjct: 439 DDEFNEKIPNLSKGDSLPVSKVSIETGETKPPTPFNEATLLSAMENPHKF-------MQI 491
Query: 513 NNICQRNYVTVTSGRRLVPTSLGIV 537
NN ++ ++ T G V T I+
Sbjct: 492 NNKELKDTLSETGGLGTVATRADII 516
>gi|46908943|ref|YP_015332.1| DNA topoisomerase III [Listeria monocytogenes serotype 4b str.
F2365]
gi|46882216|gb|AAT05509.1| DNA topoisomerase III [Listeria monocytogenes serotype 4b str.
F2365]
Length = 717
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 121/467 (25%), Positives = 206/467 (44%), Gaps = 45/467 (9%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVD----PLELFSCPTEKREATPKLKLPAFLAN 102
+ +T GH++ L + SKY NW+ D P ++ P ++ + + L N
Sbjct: 36 YVVTWALGHLVTLADPERYDSKYKNWNMEDLPMLPEKMKLEPI--KQTRKQYETVKKLMN 93
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMW 161
D +V+ D +EGE + +++ + I P K +W S++TDK I+
Sbjct: 94 RT-DITTIVIATDAGREGELVARWIIDYAK----IKKPLKRLW---ISSVTDKAIREGFE 145
Query: 162 NLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
+L +E S AR E D +G TR T + + +S G QTPTL
Sbjct: 146 HLKPGKAYENLYHSAVARSEADWVVGINATRALTTKYNAQ--------LSCGRVQTPTLA 197
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
R ++IR FKP Y+ + S TW+ G FDK+ K+++ E V
Sbjct: 198 MIQHREEEIRNFKPREYYGITALTEQE----SFTWNNGQTFDKALAEKLVKSLQGENAV- 252
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQ 338
+ DV K P + EL R A++ + I + LY + V +YPRT++
Sbjct: 253 ITDVSMKEKKNFSPGLYDLTELQRDANNRYDFSAKETLNIMQTLYERHKVLTYPRTDSRF 312
Query: 339 YPENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTKL-A 391
+ D+V L+++ ++ G++ R++ I + D V DH I PT+
Sbjct: 313 I--STDIVPTLKERLAACGVGENAKAARQISGKPIKANKSFVDNSKVSDHHAIIPTEQPV 370
Query: 392 TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
+ L ++YD +V+ F+ L +Y + K + E FT++ K + G+ +
Sbjct: 371 SLGDLSDKERKIYDLVVKRFLAVLSDPYIYEETSVKAKIGQEEFTLKGKVVKSLGWKSIY 430
Query: 452 TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
S + + + K GD IP++ + + KT PP E+ L+S ME
Sbjct: 431 GES-REPDQLTKMKKGDTIPVKRINLETGKTKPPARFNEATLLSAME 476
>gi|229003364|ref|ZP_04161193.1| DNA topoisomerase 3 [Bacillus mycoides Rock1-4]
gi|228757881|gb|EEM07097.1| DNA topoisomerase 3 [Bacillus mycoides Rock1-4]
Length = 595
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 113/418 (27%), Positives = 186/418 (44%), Gaps = 46/418 (11%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD +++ D +EGE + +++ V+ IN P K +W S++TDK IK NL
Sbjct: 95 KDVTEIIVATDAGREGELVARWIIDKVK----INKPIKRLW---ISSVTDKAIKDGFANL 147
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
+E S AR E D IG TR T F + ++ G QTPT+
Sbjct: 148 KPGKAYENLYASAVARSEADWYIGLNATRALTTRFNAQ--------LNCGRVQTPTVAII 199
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWS----RGHIFDKSTCNVFFKAVEKEKH 277
R D+I+ FK + Y+ ++ + +TW G FDK+ + K ++K+ +
Sbjct: 200 AGREDEIKNFKAQTYYGIEAQTTEK---LKLTWQDAKGNGRSFDKAKIDTIVKKLDKQ-N 255
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTET 336
TV +++ K P + EL R A+ G + I ++LY Q V +YPRT++
Sbjct: 256 ATVTEIEKKQKKSFAPGLYDLTELQRDANKIFGYSAKETLNIMQKLYEQHKVLTYPRTDS 315
Query: 337 TQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-------KDVGDHPPITPTK 389
+Y + D+V L ++ + G++ R + ++KP K V DH I PT+
Sbjct: 316 -RYISS-DIVGTLPERLKACGVGEY-RPLAHKILNKPIKSTKAFVDDSKVSDHHAIIPTE 372
Query: 390 LATRTQLDGDAWR-LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
D R +YD +V+ F+ L Y Q + + DE F K +LH G+
Sbjct: 373 SYVNFSAFTDKERKIYDLVVKRFLAVLFPAFEYEQLTLRTKIGDETFVARGKTILHSGWK 432
Query: 449 GVM--------TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
V +K + +P + GD + ++ + +T PP E+ L+S ME
Sbjct: 433 EVYENRFEDDDAVEDLKEQILPRIEKGDTLSVKLIAQTSGQTKPPARFNEATLLSAME 490
>gi|333979815|ref|YP_004517760.1| DNA topoisomerase III [Desulfotomaculum kuznetsovii DSM 6115]
gi|333823296|gb|AEG15959.1| DNA topoisomerase III [Desulfotomaculum kuznetsovii DSM 6115]
Length = 796
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 158/372 (42%), Gaps = 39/372 (10%)
Query: 206 SLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAV-SVTWSRG---HIFD 261
+L+S G QTPTL V+R +IR FKPE YW + T +G A W RG I +
Sbjct: 183 TLLSVGRVQTPTLALVVQREREIRDFKPETYWEVRATFQKSGGATYRGRWFRGGESRIKE 242
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
KS +A V V+ TK++ P N +L + A+ GM + A+
Sbjct: 243 KSRAEELVRAALAAGSGRVAQVEKRTKTEAPPLLFNLNDLQKEANRKYGMTAQKVLDAAQ 302
Query: 322 RLYTQ-GYVSYPRTETTQYPENF---DLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK 377
LY + ++YPRT++ E L L E P++G+ +R + + R
Sbjct: 303 ALYEKHKLITYPRTDSRHLTEALARDTLQKRLAALEKCPEYGELIRRIRPGMLPGKRYID 362
Query: 378 DVG--DHPPITPTKLATR-TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM 434
D G DH I PT + + L+ ++YD +VR F+ VY + V DE
Sbjct: 363 DAGVTDHHAIIPTDVTPDPSALNPAERQVYDLVVRRFLAMFYPPAVYDETAVVTEVGDET 422
Query: 435 FTMEAKYLLHPGFTGVMTWSAM----------KNESIPDFKPGDLIPIQSVKMVERKTTP 484
F + + PG+ V +++ +P G+ + ++ VER+T P
Sbjct: 423 FISRGRVEIEPGWKAVYGPEEKEEKDGKDEDGESQPLPPLAEGETVGVEEAGAVERQTKP 482
Query: 485 PDYLTESELISLMEK-----------------HGIGTDASIPVHINNICQRNYVTVTSGR 527
P TE+ L++ ME GIGT A+ I + +R Y+ +
Sbjct: 483 PKRYTEATLLAAMENAGRLLDDREMAETLKAAGGIGTPATRAAIIETLIKRGYIERRK-K 541
Query: 528 RLVPTSLGIVLV 539
LVPT G L+
Sbjct: 542 TLVPTPRGEALI 553
>gi|42519034|ref|NP_964964.1| DNA topoisomerase I [Lactobacillus johnsonii NCC 533]
gi|41583321|gb|AAS08930.1| DNA topoisomerase I [Lactobacillus johnsonii NCC 533]
Length = 693
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 119/469 (25%), Positives = 201/469 (42%), Gaps = 61/469 (13%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L +EAK +++ L D D+EGE I + V H +N++ PK R F+ IT +K A
Sbjct: 73 LKSEAKKAKYVYLASDPDREGEAIAWHVA----HALNLD-PKEHNRVAFNEITKDAVKNA 127
Query: 160 MWNLVKPNIFEARSVDARQE---LDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQT 215
N P + VDA+Q LD +G + + K +G +S G Q+
Sbjct: 128 FKN---PRTIDMDIVDAQQARRVLDRLVGYSISPILWQKVKKG---------LSAGRVQS 175
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTL-----NLNGVAVSVTWSRGHIFDKSTCNVFFK 270
L ++R ++I+ FKPE YW +D G + + + + K
Sbjct: 176 IALKLVIDRENEIKNFKPEEYWTIDADFEKGSEKFKGAFYGIKGKKQELPNNEAVQDVLK 235
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY------ 324
++K K+ + V + + T + + A+ LG M+IA+ LY
Sbjct: 236 RIDKRKNFEITKVVKKERRRQPAAPFTTSTMQQEANKRLGYRTRRTMRIAQSLYEGVNLG 295
Query: 325 --TQGYVSYPRTETTQYPENFDLVAVLRQQESSP----DWGDHVREVLSNGISKPRKGKD 378
+ G ++Y RT++ + +A + + E+S ++G++ V KP+ K+
Sbjct: 296 KGSVGLITYMRTDSKR-------IANVAKHEASKFIHEEYGENYAAV------KPQHFKN 342
Query: 379 VGD----HPPITPTKL-----ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFS 429
D H I PT + + L + +RLY I FI + VY A
Sbjct: 343 DADAQDAHEAIRPTSAFRTPASVKEYLTTEEYRLYTLIWSRFIASQMTPAVYDTVRADIE 402
Query: 430 VADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLT 489
D F L GFT V K+ +P+ GD + ++ + T PP T
Sbjct: 403 QNDVTFRTTGSKLKFAGFTKVYDNQKEKSNELPELNEGDKVKLKKTDDRQHFTQPPARYT 462
Query: 490 ESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
E+ L+ +E++G+G ++ I+ I +R YV + GR +VPT LG ++
Sbjct: 463 EASLVRTLEENGVGRPSTYAPTIDTIQKRYYVKL-EGRSIVPTELGEIV 510
>gi|150400465|ref|YP_001324231.1| DNA topoisomerase I [Methanococcus aeolicus Nankai-3]
gi|150013168|gb|ABR55619.1| DNA topoisomerase I [Methanococcus aeolicus Nankai-3]
Length = 853
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 109/446 (24%), Positives = 195/446 (43%), Gaps = 26/446 (5%)
Query: 115 DCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSV 174
D D EGE I + A+R+ N ++ K R RFS++T KDI A + +
Sbjct: 116 DWDIEGELIGYH---ALRYCCNEDNAK---RMRFSSLTKKDIIKAYEQPDNIDFGLVDAG 169
Query: 175 DARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPE 234
D R LD G + Q +S G Q P L F V+R +IR F P
Sbjct: 170 DTRHRLDWYYGINMS---VALMQCIRSVNRWHTMSTGRVQGPALSFLVDRELEIRKFVPV 226
Query: 235 PYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQ 294
PYW++D L +A+ + +D+ N + ++ EK V +V+ + K+
Sbjct: 227 PYWVIDANLKDGLIAIH---EKDKFWDEKEANTIYNKIKDEKEAIVANVKKTKKTIKPNP 283
Query: 295 ALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA-VLRQQE 353
+ L R A P +IA++LY + SYPRT + + P++ + + +L +
Sbjct: 284 PFDLGALQREAHRIFKFSPKKTQEIAQKLYEKAICSYPRTSSQKLPKDDNYINDILNKVV 343
Query: 354 SSPDWGDHVREVLSNGISKPRKGK-DVGDHPPI----TPTKLATRTQLDGDAWRLYDYIV 408
+ +G + + ++ G KP +GK D HP I TP + +L + +LYD IV
Sbjct: 344 NHNIYGKYAKSIIEEG-RKPIEGKKDDPAHPAIHFVDTP-----KEELPPEEQKLYDLIV 397
Query: 409 RHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGD 468
R + + + E+F + + G+ + ++ +P + +
Sbjct: 398 RRTLAVFWDNAEREYSNISLDIGGEIFKLSGSRTIKEGWHEIYYFTKFDETELPALRKNN 457
Query: 469 LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRR 528
I ++ + + E++T PP T S +I +E +GT ++ + + +R Y+ +
Sbjct: 458 KIVVEKINIEEKETKPPKRYTMSSIIKELENRELGTKSTRADIVEKLVKRGYLIEDNS-- 515
Query: 529 LVPTSLGIVLVHGYQKIDRELVEPTM 554
L T LGI ++ +K E+++ M
Sbjct: 516 LTVTDLGIGVIEVLKKYCPEIIDEQM 541
>gi|255093253|ref|ZP_05322731.1| DNA topoisomerase III [Clostridium difficile CIP 107932]
Length = 678
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 114/420 (27%), Positives = 190/420 (45%), Gaps = 37/420 (8%)
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
D + +V+ D +EGE + ++E + Q+ K + R S+ TDK IK L
Sbjct: 96 DIDEIVIATDAGREGELVARWIIE--KSQV----KKPIKRLWISSSTDKAIKDGFAKLRS 149
Query: 166 PNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVE 223
+E S AR E D IG TR T + + +S G QTPTL ++
Sbjct: 150 GKEYENLYYSAIARAEADWIIGINATRALTTKYNAQ--------LSCGRVQTPTLAMLLK 201
Query: 224 RHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWS----RGHIFDKSTCNVFFKAVEKEKHVT 279
R ++IR FKP+ Y+ L+L + W+ F K K V K +
Sbjct: 202 REEEIRNFKPKEYYGLELIATKGNSDIKFIWNDKNNNSSTFSKEKIESILKKV-KGVDIK 260
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQ 338
+ +V S K K P + EL R A+ G + I ++LY V +YPRT++
Sbjct: 261 ISEVNKSYKKKYSPALYDLTELQRDANKMFGFSAKETLSIMQKLYEHHKVLTYPRTDSRY 320
Query: 339 YPENFDLVAVLRQQESSPDWGDHVR---EVLSNGISKPRKGKD---VGDHPPITPTKLAT 392
D+V L+ + + + D+ + ++L + I + D V DH I PT+
Sbjct: 321 LTS--DIVGTLKDRIKAVNISDYSKICNKLLKSNIIANKSFVDNSKVTDHHAIIPTEQKV 378
Query: 393 RTQLDGDAWR-LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
D R +Y+ +V+ F+ L Y Q +V E+F + +++ G+
Sbjct: 379 FMSDFSDKERKIYNLVVKRFLAVLSPPFEYEQTTISATVEGEIFKAKGNKVINLGWK--E 436
Query: 452 TWSAMKNE----SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDAS 507
++ +++E SIP+ D++ ++ +K+ KT PP YL E L++ MEK+G+GT A+
Sbjct: 437 SYKDIEDEDEYESIPNVLEKDVLKVKGLKITSGKTNPPPYLNEGTLLTAMEKNGLGTVAT 496
>gi|358066540|ref|ZP_09153066.1| DNA topoisomerase 3 [Clostridium hathewayi WAL-18680]
gi|356695292|gb|EHI56925.1| DNA topoisomerase 3 [Clostridium hathewayi WAL-18680]
Length = 734
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 128/477 (26%), Positives = 204/477 (42%), Gaps = 60/477 (12%)
Query: 58 GHIMGL----DFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAK----DCEF 109
GH++ L D+ +KY W K++ L + P + K + A +++ D
Sbjct: 42 GHLVTLADPEDYDTKYKEW-KMEHLPMM--PDHFKLEIIKQTGKQYQAVKSQIHRPDVGE 98
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK---- 165
+++ D +EGE + ++E S K + R S++TDK IK +L
Sbjct: 99 IIIATDAGREGELVARLILEKA------GSKKPIKRLWISSVTDKAIKEGFSHLKNGHEY 152
Query: 166 PNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERH 225
N+++A R E D +G TR T + + +S G QTPTL +R
Sbjct: 153 DNLYDA--AMCRAEADWLVGINATRALTCKYNAQ--------LSCGRVQTPTLAMIAKRE 202
Query: 226 DKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRG-----HIFDKSTCNVFFKAVEKEKHVTV 280
+ IR F P+ Y+ +T ++++TW G FDK + + TV
Sbjct: 203 EDIRAFVPQSYY--GITAKCMAPSLTLTWQDGTSKSCRSFDKERIQSLVQKLNMTDG-TV 259
Query: 281 VDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQY 339
DV+ + K PQ + EL R A+ + I +RLY V +YPRT++
Sbjct: 260 EDVKRTPKKTYAPQLYDLTELQRDANKRFDYSAKETLNIMQRLYENHKVLTYPRTDSRYI 319
Query: 340 PENFDLVAVLRQQESSPDWGDHV----REVLSNGISKPR--KGKDVGDHPPITPT-KLAT 392
+ D+V L+++ + G + R + +KP V DH I PT +
Sbjct: 320 --STDIVPTLKERLKAISIGPYKKIAGRLAMQPITAKPSFVDNAKVSDHHAIIPTEQFVQ 377
Query: 393 RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
+ D R+YD +VR F+ LC Y Q +V E FT + K + G+ V
Sbjct: 378 MDHMTVDERRIYDLVVRRFLAVLCPPFEYEQTTLDINVGGEHFTAKGKIVKSQGWKEVYE 437
Query: 453 WSA-----------MKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
A +K +++P+ K GD +P SV M E KT PP E+ L+S ME
Sbjct: 438 QDADSYDEEDSEPDIKGQTLPELKKGDKLPRLSVSMTEGKTKPPAPFNEATLLSAME 494
>gi|403388889|ref|ZP_10930946.1| DNA topoisomerase III [Clostridium sp. JC122]
Length = 733
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 122/471 (25%), Positives = 199/471 (42%), Gaps = 55/471 (11%)
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
D E +V+ D +EGE + +++ ++ S +W S+ TDK I NL
Sbjct: 96 DIESVVIATDAGREGELVARWILDKCHYR---GSLSRLW---ISSQTDKAILDGFKNLKN 149
Query: 166 PNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVE 223
+E ++ AR E D +G TR T + +ASL S G QTPTL V
Sbjct: 150 GKEYENLYKAATARAEADWVVGLNVTRALTCRY-------NASL-SAGRVQTPTLAMIVN 201
Query: 224 RHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV 283
R ++I+ FKP+ Y+ ++ N + + IFD KE+ TVV+V
Sbjct: 202 RENEIKHFKPKAYYTINGKCNGFNLTHVDNKNNSRIFDVKVAESIVAKTNKEEG-TVVEV 260
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY-TQGYVSYPRTETTQYPEN 342
+ S K P + EL R + G + I +RLY ++YPRT++
Sbjct: 261 KESAKKNYAPMLYDLTELQRDCNKIFGYSAKQTLSIMQRLYENHKILTYPRTDSRHITT- 319
Query: 343 FDLVAVLRQQESSPDWGDH---VREVLSNGISKPRKGKD---VGDHPPITPT-KLATRTQ 395
D+V L+ + S +G++ +++ GI + D V DH I PT + +
Sbjct: 320 -DIVPTLKDRLKSISFGNYRMFCDDIIRKGIKANKSFVDNNRVSDHHAIIPTEERVIISH 378
Query: 396 LDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV----- 450
L + +YD +++ F+ + Y Q +V E F + K + G+ V
Sbjct: 379 LSSEERNVYDLVIKRFLSVMLPPFEYIQTTVDVNVKGERFLAKGKVVQSKGWKAVYDREM 438
Query: 451 ----MTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK------- 499
++ + +P F+ G+ + I SV M + +T PP E L+S ME
Sbjct: 439 DDDKEDIDDLREQMLPKFEKGEKVKILSVDMKKGETKPPARFNEGTLLSAMENPQKYVHV 498
Query: 500 -----------HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
GIGT A+ I + Y+ G+ ++PTS GI L+
Sbjct: 499 DKNAAKTLGETGGIGTVATRADIIEKLYNMFYIE-KKGKDIIPTSKGIQLI 548
>gi|452974224|gb|EME74045.1| DNA topoisomerase III [Bacillus sonorensis L12]
Length = 727
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 115/417 (27%), Positives = 184/417 (44%), Gaps = 46/417 (11%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD + +V+ D +EGE + ++E + +N P K +W S++TDK IK NL
Sbjct: 95 KDVKDIVIATDAGREGELVARWIIEKAK----VNKPLKRLW---ISSVTDKAIKDGFKNL 147
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
FE S AR E D +G TR T F + +S G QTPTL
Sbjct: 148 KSGKEFENLYHSAVARAEADWIVGINATRALTTKFNAQ--------LSCGRVQTPTLAMI 199
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWS-----RGHIFDKSTCNVFFKAVEKEK 276
+R + I+ FKP PY+ L ++ +++TW + F+ S + KA++ K
Sbjct: 200 AKREEDIKNFKPVPYYGLRAAVD----GMTLTWQDKKTKQSRTFNASVTSQLAKALQG-K 254
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTE 335
+ D++ + K P + EL R A G + + ++LY Q V+YPRT+
Sbjct: 255 PAVISDLKKTAKKSFAPGLYDLTELQRDAHKRFGFSAKETLSVLQKLYEQHKLVTYPRTD 314
Query: 336 TTQYPENFDLVAVLRQQ----ESSPDWGDHVREVLSNGISKPR---KGKDVGDHPPITPT 388
+++ N D+V L+ + + P + HV +L GI + V DH I PT
Sbjct: 315 -SRFLSN-DIVPTLKDRLEGMQVKP-YAQHVSRILQRGIKAGKSFVNDAKVSDHHAIIPT 371
Query: 389 KLATRTQLDGDAWR-LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
+ D R LYD I + F+ L Y + + E FT + K + G+
Sbjct: 372 EEPLSLGALSDKERKLYDLIAKRFLAVLMPPFEYEETKVLAEIGGETFTAKGKTVQSQGW 431
Query: 448 TGV------MTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
V K++++P K GD + ++S+ + +T PP E L+S ME
Sbjct: 432 KAVYDYAEEDDDEEEKDQTLPKLKKGDTLSVRSLTETKGETKPPARFNEGTLLSAME 488
>gi|423083825|ref|ZP_17072353.1| DNA topoisomerase [Clostridium difficile 002-P50-2011]
gi|423087478|ref|ZP_17075866.1| DNA topoisomerase [Clostridium difficile 050-P50-2011]
gi|357543623|gb|EHJ25638.1| DNA topoisomerase [Clostridium difficile 002-P50-2011]
gi|357544896|gb|EHJ26883.1| DNA topoisomerase [Clostridium difficile 050-P50-2011]
Length = 706
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 114/420 (27%), Positives = 190/420 (45%), Gaps = 37/420 (8%)
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
D + +V+ D +EGE + ++E + Q+ K + R S+ TDK IK L
Sbjct: 96 DIDEIVIATDAGREGELVARWIIE--KSQV----KKPIKRLWISSSTDKAIKDGFAKLRS 149
Query: 166 PNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVE 223
+E S AR E D IG TR T + + +S G QTPTL ++
Sbjct: 150 GKEYENLYYSAIARAEADWIIGINATRALTTKYNAQ--------LSCGRVQTPTLAMLLK 201
Query: 224 RHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWS----RGHIFDKSTCNVFFKAVEKEKHVT 279
R ++IR FKP+ Y+ L+L + W+ F K K V K +
Sbjct: 202 REEEIRNFKPKEYYGLELIATKGNSDIKFIWNDKNNNSSTFSKEKIESTLKKV-KGVDIK 260
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQ 338
+ +V S K K P + EL R A+ G + I ++LY V +YPRT++
Sbjct: 261 ISEVNKSYKKKYSPALYDLTELQRDANKMFGFSAKETLSIMQKLYEHHKVLTYPRTDSRY 320
Query: 339 YPENFDLVAVLRQQESSPDWGDHVR---EVLSNGISKPRKGKD---VGDHPPITPTKLAT 392
D+V L+ + + + D+ R ++L + I+ + D V DH I PT+
Sbjct: 321 LTS--DIVGTLKDRIKAVNISDYSRICNKLLKSNITANKSFVDNSKVTDHHAIIPTEQKV 378
Query: 393 RTQLDGDAWR-LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
D R +Y+ +V+ F+ L Y Q +V E+F + +++ G+
Sbjct: 379 FMSDFSDKERKIYNLVVKRFLAVLSPPFEYEQTTISATVEGEIFKAKGNKVINLGWK--E 436
Query: 452 TWSAMKNE----SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDAS 507
++ +++E SIP+ D++ ++ +K+ KT PP YL E L++ MEK+ +GT A+
Sbjct: 437 SYKDIEDEDEYESIPNVLEKDILKVKGLKITSGKTNPPPYLNEGTLLTAMEKNSLGTVAT 496
>gi|407793826|ref|ZP_11140857.1| DNA topoisomerase I subunit omega [Idiomarina xiamenensis 10-D-4]
gi|407213980|gb|EKE83831.1| DNA topoisomerase I subunit omega [Idiomarina xiamenensis 10-D-4]
Length = 874
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 122/448 (27%), Positives = 193/448 (43%), Gaps = 34/448 (7%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
A + + L D D+EGE I + + E + + S R F+ IT K IK A
Sbjct: 106 ADKADHIYLATDLDREGEAIAWHLRELIGGDDSRFS-----RVVFNEITKKAIKEAFAEP 160
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVE 223
+ N+ + R+ LD +G + K A +S G Q+ VE
Sbjct: 161 AQLNLHRVNAQQTRRFLDRVVGFMVSPLLWKKI--------ARGLSAGRVQSVATRLVVE 212
Query: 224 RHDKIRTFKPEPYWLLDLTLNLN-----GVAVSVTWSRGHIFDKSTCNVFFKAVEK-EKH 277
R +I+ F PE YW D+ +L+ + + V +G F+ +AV+ +K
Sbjct: 213 REREIKAFVPEEYW--DIYADLSTAEKIALRMQVDKYQGKKFEAHNEQQTQQAVDALQKA 270
Query: 278 VTVVDVQSSTKSKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTET 336
VV + + ++P A T L + AS+ +G G M +A+RLY G+++Y RT++
Sbjct: 271 SYVVQDREDKPTSSRPSAPFITSTLQQAASTRMGFGVKKTMTLAQRLYEAGHITYMRTDS 330
Query: 337 TQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPT----KLAT 392
T + + V RQ S D+G N ++ H I P+ K A+
Sbjct: 331 TNLSQ--EAVNACRQLIES-DYGHEYLPEKPNRYGAKSNAQEA--HEAIRPSDVKVKAAS 385
Query: 393 RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
LD DA RLYD I R F+ Y S AD + + G+T VM
Sbjct: 386 LGSLDRDAQRLYDLIWRQFVACQMTPARYDSTTLTVSAADYQLKARGRVMRFAGWTAVMP 445
Query: 453 WSAMKNE--SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPV 510
++ KNE +PD GD + + + + T PP +E+ L+ +EK GIG ++
Sbjct: 446 VNSKKNEDAELPDINKGDSLDLDKLDPQQHFTKPPARYSEASLVKELEKRGIGRPSTYAS 505
Query: 511 HINNICQRNYVTVTSGRRLVPTSLGIVL 538
I+ I R YV V + RR +G ++
Sbjct: 506 IISTIQDRGYVRVDN-RRFYAEKMGEIV 532
>gi|297584222|ref|YP_003700002.1| DNA topoisomerase III [Bacillus selenitireducens MLS10]
gi|297142679|gb|ADH99436.1| DNA topoisomerase III [Bacillus selenitireducens MLS10]
Length = 729
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 130/528 (24%), Positives = 235/528 (44%), Gaps = 48/528 (9%)
Query: 46 GDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEA- 104
G +V + + +C + + S++ W +D L + P E R K K AF ++
Sbjct: 39 GAVVTWAVGHLCELVPPEHYRSEWKTWS-MDTLPIL--PEEFRFQVIKGKGKAFQTIKSF 95
Query: 105 ---KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMW 161
+D ++ D ++EGE I ++ R+Q + K +W + + K+ +A+
Sbjct: 96 IHDQDITGIIHAGDAEREGEAIIRMILHQARNQKPV---KRLWISSLTPDAVKEGFSALL 152
Query: 162 NLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
+ + + ++ +R D +G +R T F+ K+G D + S G QTPTL
Sbjct: 153 DSIDTDHLYDEAL-SRSFADWLVGINASRAYTLQFK-KHGIND--VYSTGRVQTPTLALI 208
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFF----KAVEKEKH 277
V+R ++I F +P+W + T + + W + D N +A +
Sbjct: 209 VKRENEIDEFVSKPFWEVHATFSHEQGSYGAVWHKDG--DSRLLNSVMAERIQAFCTNRP 266
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
++D + K+ P N L + P H ++IA++LY +GY+SYPRT++T
Sbjct: 267 ARILDQRVKQKAIPAPSFFNLSSLQAAMNKRYTFSPKHTLEIAQKLYVKGYISYPRTDST 326
Query: 338 --QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPR--KGKDVGDHPPITPT-KLAT 392
E +L++ E + H S+ ++ R K V DH I PT ++ +
Sbjct: 327 FITTQEERQFPGILKKLEKKEPFSAHFPLPFSSLQNRNRYVNEKKVRDHYAIIPTEQVPS 386
Query: 393 RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM--FTMEAKYLLHPGFTGV 450
++L D ++Y+ IV I L+ + ++ DE F + K ++ PG+ V
Sbjct: 387 FSKLSADEQKIYEVIVNSLIAAHYPPLMMSYTEID-TIVDERAEFKSKGKSVISPGWRDV 445
Query: 451 MTWSAMKNES--IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLM----------- 497
+ + ++ +P+ GD + S ++ E +T PP TE ELI+LM
Sbjct: 446 IPFPKANSQEQWLPNVDKGDAVTGDSFEVKESETKPPKRYTEGELITLMKTAGKHVDDRE 505
Query: 498 ------EKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
E G+GT+A+ I + QRNY+T+T + PT G +L+
Sbjct: 506 LTGILHETEGLGTEATRANIIAVLQQRNYITITKN-TVFPTDKGKLLI 552
>gi|325983537|ref|YP_004295939.1| DNA topoisomerase III [Nitrosomonas sp. AL212]
gi|325533056|gb|ADZ27777.1| DNA topoisomerase III [Nitrosomonas sp. AL212]
Length = 838
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 140/564 (24%), Positives = 240/564 (42%), Gaps = 70/564 (12%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWD----KVDPLELFSCPTEKREATPKLKLPAFLAN 102
+ ++S GH++ L ++ K W V P P EK + +LKL + L
Sbjct: 36 YVISSAVGHLLELAIPEEYEVKRGKWSFTNLPVIPPHFDLNPIEK--TSSRLKLLSKLIK 93
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWN 162
KD + L+ D +EGE I + ++ RH + + K V R ++T I+
Sbjct: 94 R-KDIDSLINACDAGREGELIFYYIL---RH---VGTDKPVKRLWLQSMTPDAIREGFTR 146
Query: 163 LVKPNIFE--ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGF 220
L+ + + A + +R E D +G TR T F + G + + G QTPTL
Sbjct: 147 LMDSSEVKSLAEAAVSRSESDWLVGINGTRAMTAF-NSQEGGFHKTTV--GRVQTPTLAI 203
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAV---EKEKH 277
VER +KI+ F+P+ YW + T + + W F K N K E+ K
Sbjct: 204 LVEREEKIKKFRPQDYWEIHATFTTSNGDYTGKWF-DEKFTKDKINQESKPERLWEQTKA 262
Query: 278 VTV----------VDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQG 327
+ V+ +S + P + L R A+S G + +A+ LY +
Sbjct: 263 AIIRDKCQGKSGHVNEESKPSKEICPLLYDLTSLQRDANSRFGFSAKATLGLAQALYEKH 322
Query: 328 YV-SYPRTETTQYPENF-DLVAVLRQQESSPDWGDHVREVLSNGISKPRK----GKDVGD 381
V +YPRT++ PE++ V Q + D+G R++L++ P K + D
Sbjct: 323 KVLTYPRTDSRALPEDYIGTVKDTVQNLENTDYGKFCRQILASNWVVPNKRIFNNAKISD 382
Query: 382 HPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTL--CGDLVYTQKVAKFSVADEMFTMEA 439
H I PT L T+L+ +LYD + + F+ + + T ++ + + +E F E
Sbjct: 383 HFAIIPTSL-NPTKLNEAEAKLYDLVTKRFLAIFFPAAEFLVTTRITR--IENEPFKTEG 439
Query: 440 KYLLHPGFTGVMTWS-----AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
K +++PG+ V S A + ++ PG+ + +++ +V +T PP E+ L+
Sbjct: 440 KVMVNPGWQAVYGKSTKPDNAEDDNTLVAIIPGESVITEAIDIVANQTRPPARFNEATLL 499
Query: 495 SLMEK----------------HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
S ME G+GT A+ I + NY+ GR L PT+ L
Sbjct: 500 SAMESAGKLVEDEELRAAMSAKGLGTPATRAAIIEGLVFENYIQRV-GRELHPTAKAFSL 558
Query: 539 VHGYQKID-RELVEPTMRSAYRVQ 561
+ + + EL+ P + + Q
Sbjct: 559 ITLLRGLKIPELISPELTGNWEFQ 582
>gi|347753632|ref|YP_004861197.1| DNA topoisomerase III [Bacillus coagulans 36D1]
gi|347586150|gb|AEP02417.1| DNA topoisomerase III [Bacillus coagulans 36D1]
Length = 695
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 142/543 (26%), Positives = 234/543 (43%), Gaps = 70/543 (12%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEK---REATPKLKLPAFLANE 103
+ +T GH++ L D+ KY W +++ L + E R+ P+ K L
Sbjct: 35 YIVTWALGHLIELKMPEDYHPKYKEW-RMEDLPILPDKMEIKTIRQTYPQYKAIEQLGKR 93
Query: 104 A--KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMW 161
+ KDC ++ D +EGE + ++E ++ K V R S+ TDK IK
Sbjct: 94 SDIKDC---IIATDAGREGELVARWILE------KMHWRKPVKRLWISSQTDKAIKDGFK 144
Query: 162 NLVKP-----NIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTP 216
L KP N++ S R E D IG +R T KY D +S G QTP
Sbjct: 145 QL-KPAKQYDNLYH--SAVCRSEADWLIGLNVSRALT----VKYNDP----LSAGRVQTP 193
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGH-----IFDKSTCNVFFKA 271
TL +ER +I++F P+ YW ++ +A + S H IFD+ N A
Sbjct: 194 TLAMVLEREREIQSFVPKKYWTIE------ALAGKLEVSYDHHGEKRIFDEQKANAIHAA 247
Query: 272 VEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVS 330
+ + V V +V K + +P + EL R A+ G + + + LY Q V+
Sbjct: 248 LSGQTAV-VTEVIRKQKQEQQPLPYDLTELQRDANHRFGFTAKKTLNVLQNLYEQHKLVT 306
Query: 331 YPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK----------DVG 380
YPRT++ ++ + + R + + V+ +LS RKGK V
Sbjct: 307 YPRTDSKYLTKDMENMMYDRLLAVKDAYKEEVQPILS------RKGKILAKRVINDAKVT 360
Query: 381 DHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA 439
DH I PT + + L D ++YD IV+ F+ Y K + T
Sbjct: 361 DHHAIIPTDERPALSDLSADERKIYDLIVKRFLALFYPVYEYETVQFKLQAGGKTMTGRT 420
Query: 440 KYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
+ + GFT V+ + N ++ K G ++ +++ + T P +E++++S ME
Sbjct: 421 MAVKNAGFTAVLHHEQERENTALLSIKEGKKFKLEQIRLSQHLTEAPKRYSEADILSRME 480
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAY 558
K+G+GT A+ I + ++ SG RLVPT G L+ ++ EL P + + +
Sbjct: 481 KYGLGTPATRADIIERLVSSETISRESG-RLVPTPKGKQLI---DLVNDELKSPELTAKW 536
Query: 559 RVQ 561
Q
Sbjct: 537 EEQ 539
>gi|418294394|ref|ZP_12906289.1| DNA topoisomerase III [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
gi|379065772|gb|EHY78515.1| DNA topoisomerase III [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
Length = 648
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 124/499 (24%), Positives = 204/499 (40%), Gaps = 76/499 (15%)
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
+C LV+ D D+EGE I E++E R++ I + +W SA+ D I+ A+ L K
Sbjct: 92 ECSELVIATDADREGEMIARELVEHCRYRGPI---RRLW---LSALDDASIRKALAAL-K 144
Query: 166 P-----NIFEARSVDARQELDLRIGCAFTRYQTKFF-QGKYGDLDASLISYGPCQTPTLG 219
P N++ A R D IG +R T Q Y ++ G QTPTL
Sbjct: 145 PGAETFNLYHA--ALGRSRADWLIGMNMSRLFTLLGRQSGY----QGVLPVGRVQTPTLR 198
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWS--------RGHIFDKSTCNVFFKA 271
V+R I F P P+W +D+ L +G A + W +G D++ + A
Sbjct: 199 LVVDRDRSIADFIPVPFWAIDVQLLADGAAFTAQWQAPDDLCDDQGRCLDQARAQLAADA 258
Query: 272 VEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY-TQGYVS 330
+ +V +++ + + P + L V S LG+G + IA+ LY T ++
Sbjct: 259 MRNASSARLVKLKTERQREAAPLPFDLGTLQEVCSKKLGLGAQETLDIAQALYETHKLIT 318
Query: 331 YPRTET-----TQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-----DVG 380
YPR++ +Q+ E +VA L Q D L + + R+ + VG
Sbjct: 319 YPRSDCGYLPLSQHGEARAIVAALTQ-------ADPTLAALQSHLDLSRRSRAWNDAKVG 371
Query: 381 DHPPITPTKLATRTQ-LDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA 439
H I PT A + L G +Y+ I ++ + Y + A F A +
Sbjct: 372 AHHGIIPTAAARGLERLAGRPRAVYELIRARYLAQFLPNHEYDRTQADFDCAGQALRAVG 431
Query: 440 KYLLHPGFTGVM---------TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTE 490
K ++ PG+ M A +S+P + G + + + +++T PP TE
Sbjct: 432 KRIVEPGWKRAMPEALAPARGNREAAAPQSLPTLQQGQDYAVGEITLKDQQTQPPKPFTE 491
Query: 491 SELISLMEK-----------------HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTS 533
+LI M+ GIGT+A+ I + R Y+ V G+ L T
Sbjct: 492 GDLIKAMKNVAKLVDDPRLKQKLKDTTGIGTEATRAGIIQGLLDRGYL-VRQGKALAATP 550
Query: 534 LGIVLVHGYQKIDRELVEP 552
L+ + R + +P
Sbjct: 551 AAFSLIDA---VPRPIADP 566
>gi|429214910|ref|ZP_19206072.1| DNA topoisomerase I [Pseudomonas sp. M1]
gi|428154137|gb|EKX00688.1| DNA topoisomerase I [Pseudomonas sp. M1]
Length = 869
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 123/448 (27%), Positives = 192/448 (42%), Gaps = 32/448 (7%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
AKD + + L D D+EGE I + + EA+ R F+ IT K I+ A
Sbjct: 106 AKDADTIYLATDLDREGEAIAWHLREAIG-----GDDSRYKRVVFNEITKKAIQEAFSQP 160
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
+ +I + AR+ LD +G + +K +G +S G Q+ + V
Sbjct: 161 GELDINRVNAQQARRFLDRVVGYMVSPLLWSKIARG---------LSAGRVQSVAVKLVV 211
Query: 223 ERHDKIRTFKPEPYWLLDLTLNL---NGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
ER +IR F PE YW + LN + V +G F A+EK K +
Sbjct: 212 EREREIRAFVPEEYWEIHADLNTPRGDKARFEVVREKGEAFKPLNEAQAMAALEKLKASS 271
Query: 280 VVDVQSSTK-SKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
+ K + ++P A T L + AS+ LG G M +A+RLY GY++Y RT++T
Sbjct: 272 YSVAKREDKPTSSRPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDST 331
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR-TQL 396
+ D + ++R S ++G N S ++ H I P+ + R TQL
Sbjct: 332 NL--SADAIDMVRGFIDS-EFGKKYLPAKPNFYSSKEGAQEA--HEAIRPSDVNLRPTQL 386
Query: 397 DG---DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
G DA RLYD I R F+ Y + D + + L G+T V+
Sbjct: 387 SGMERDAERLYDLIWRQFVACQMPPAEYLSTTVSVAAGDFELRAKGRILKFDGYTRVLPQ 446
Query: 454 SAMKNES--IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
E +P GD + + + + T PP +E+ L+ +EK GIG ++
Sbjct: 447 QGKPGEDDVLPMMDQGDAMKLLKLDPSQHFTKPPARYSEASLVKELEKRGIGRPSTYAAI 506
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLV 539
I+ I +R YVT T RR +G ++
Sbjct: 507 ISTIQERGYVT-THNRRFYAEKMGDIVT 533
>gi|268319573|ref|YP_003293229.1| DNA topoisomerase I [Lactobacillus johnsonii FI9785]
gi|262397948|emb|CAX66962.1| DNA topoisomerase I [Lactobacillus johnsonii FI9785]
Length = 693
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 120/465 (25%), Positives = 198/465 (42%), Gaps = 53/465 (11%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L +EAK +++ L D D+EGE I + V H +N++ PK R F+ IT +K A
Sbjct: 73 LKSEAKKAKYVYLASDPDREGEAIAWHVA----HALNLD-PKEHNRVAFNEITKDAVKNA 127
Query: 160 MWNLVKPNIFEARSVDARQE---LDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQT 215
N P + VDA+Q LD +G + + K +G +S G Q+
Sbjct: 128 FKN---PRTIDMDIVDAQQARRVLDRLVGYSISPILWQKVKKG---------LSAGRVQS 175
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDL-----TLNLNGVAVSVTWSRGHIFDKSTCNVFFK 270
L ++R ++I+ FKPE YW +D T G + + + + K
Sbjct: 176 VALKLVIDRENEIKNFKPEEYWTIDADFEKGTEKFKGAFYGIKGKKQELPNNEAVQDVLK 235
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY------ 324
++K K+ V V + + T + + A+ LG M+IA+ LY
Sbjct: 236 RIDKRKNFEVTKVVKKERRRQPAAPFTTSTMQQEANKRLGYRTRRTMRIAQSLYEGVNLG 295
Query: 325 --TQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD- 381
+ G ++Y RT++ + +A + + E+S + E S KP+ K+ D
Sbjct: 296 KGSVGLITYMRTDSKR-------IANVAKHEASKFIHEEYGE--SYAAVKPQHFKNDADA 346
Query: 382 ---HPPITPTKL-----ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADE 433
H I PT + + L + +RLY I FI + VY A D
Sbjct: 347 QDAHEAIRPTSAFRTPASVKEYLTTEEYRLYTLIWSRFIASQMTPAVYDTVRADIEQNDI 406
Query: 434 MFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESEL 493
F L GFT V + +P+ GD + ++ + T PP TE+ L
Sbjct: 407 AFRTTGSKLKFAGFTKVYDNQKENSNELPELNEGDKVKLKKTDDRQHFTQPPARYTEASL 466
Query: 494 ISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
+ +E++G+G ++ I+ I +R YV + GR +VPT LG ++
Sbjct: 467 VRALEENGVGRPSTYAPTIDTIQKRYYVKL-EGRSIVPTELGEIV 510
>gi|229083668|ref|ZP_04215992.1| DNA topoisomerase 3 [Bacillus cereus Rock3-44]
gi|228699631|gb|EEL52292.1| DNA topoisomerase 3 [Bacillus cereus Rock3-44]
Length = 728
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 115/421 (27%), Positives = 186/421 (44%), Gaps = 52/421 (12%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD +++ D +EGE + +++ V+ IN P K +W S++TDK IK NL
Sbjct: 95 KDVNEIIVATDAGREGELVARWIIDKVK----INKPIKRLW---ISSVTDKAIKDGFANL 147
Query: 164 VKP-----NIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTL 218
KP N++ S AR E D IG TR T F + ++ G QTPT+
Sbjct: 148 -KPGKAYDNLYA--SAVARSEADWYIGLNATRALTTRFNAQ--------LNCGRVQTPTV 196
Query: 219 GFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWS----RGHIFDKSTCNVFFKAVEK 274
R D+I+ FK + ++ ++ + +TW G FDK+ + K ++K
Sbjct: 197 AIIAGREDEIKNFKAQTHYGIEAQ---TSEKLKLTWQDARGNGRSFDKAKIDTIVKKLDK 253
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPR 333
+ + TVV++ K P + EL R A+ G + I ++LY Q V +YPR
Sbjct: 254 Q-NATVVEIDKKVKKSFAPGLYDLTELQRDANKIFGYSAKETLNIMQKLYEQHKVLTYPR 312
Query: 334 TETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-------KDVGDHPPIT 386
T++ D+V L ++ + G++ R + ++KP K V DH I
Sbjct: 313 TDSRYISS--DIVGTLPERLKACGVGEY-RSLAHKILNKPIKSTKAFVDDSKVSDHHAII 369
Query: 387 PTKLATRTQLDGDAWR-LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHP 445
PT+ D R +YD +V+ F+ L Y Q + + DE F K +LH
Sbjct: 370 PTESYVNFSAFTDKERKIYDLVVKRFLAVLFPAFEYEQLTLRTKIGDETFVARGKTILHS 429
Query: 446 GFTGVM--------TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLM 497
G+ V +K + +P + GD + I+ + +T PP E+ L+S M
Sbjct: 430 GWKEVYENRFDDDDAVEDLKEQILPRIEKGDALSIRLIAQTSGQTKPPARFNEATLLSAM 489
Query: 498 E 498
E
Sbjct: 490 E 490
>gi|333901948|ref|YP_004475821.1| DNA topoisomerase III [Pseudomonas fulva 12-X]
gi|333117213|gb|AEF23727.1| DNA topoisomerase III [Pseudomonas fulva 12-X]
Length = 649
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 124/497 (24%), Positives = 212/497 (42%), Gaps = 81/497 (16%)
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKP--- 166
LV+ D D+EGE I E++E R++ I + +W SA+ D I+ A+ L KP
Sbjct: 96 LVIATDADREGEMIARELLEHCRYRGPI---QRLW---LSALDDASIRKALAAL-KPGAS 148
Query: 167 --NIFEARSVDARQELDLRIGCAFTRYQTKF-----FQGKYGDLDASLISYGPCQTPTLG 219
N+++ S R D IG +R T +QG ++ G QTPTL
Sbjct: 149 TYNLYQ--SALGRSRADWLIGMNMSRLFTLLGRKSGYQG--------VLPVGRVQTPTLR 198
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW--------SRGHIFDKSTCNVFFKA 271
V+R I F P P+W +D+TL+ NG+ + W +G + +A
Sbjct: 199 LVVDRDRSIADFVPVPFWAIDVTLDGNGIPFTAVWRAPQDDCDEQGRCLKQEVAQRAAEA 258
Query: 272 VEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY-TQGYVS 330
++ +H + +++ + P + L +V S LG+G + IA++LY T ++
Sbjct: 259 MQGAEHAVLEKLKTERMREAPPLLFDLGTLQQVCSKKLGLGAQETLDIAQKLYETDKLIT 318
Query: 331 YPRTET-----TQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPR----KGKDVGD 381
YPR++ +Q+ E ++A L Q + + +REVL++ ++ R V
Sbjct: 319 YPRSDCGYLPLSQHAEAPAILAALGQADPT------LREVLAHTQTQRRSRAWNDAKVSA 372
Query: 382 HPPITPTKLATR-TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
H I PT A T+L G +Y+ I ++ + Y + A F A K
Sbjct: 373 HHGIIPTLAAGGLTRLSGRPRAVYELIRARYLAQFLPNHEYDRTQADFDCAGHDLRAVGK 432
Query: 441 YLLHPGFTGVMTWS--------AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESE 492
++ PG+ + + A +++P G ++ V + ++ T PP TE +
Sbjct: 433 QIVEPGWKRALPEALAPSKGREAPAPQALPALHEGQTCAVREVTLKDQFTQPPKPFTEGD 492
Query: 493 LISLM-----------------EKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLG 535
LI M + GIGT+A+ I + R Y+T G+ L TS
Sbjct: 493 LIQAMKNVARLVEDPLLKQKLKDTTGIGTEATRAGIIQGLLDRGYLT-KQGKTLAATSAA 551
Query: 536 IVLVHGYQKIDRELVEP 552
L+ + R + +P
Sbjct: 552 FGLIDA---VPRAIADP 565
>gi|219854314|ref|YP_002471436.1| hypothetical protein CKR_0971 [Clostridium kluyveri NBRC 12016]
gi|219568038|dbj|BAH06022.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 729
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 122/475 (25%), Positives = 206/475 (43%), Gaps = 61/475 (12%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLV 164
KD +++ D +EGE + ++E R + KTV R S+ TDK IK NL
Sbjct: 97 KDIGEIIIATDSGREGELVARWIIEKARVK------KTVKRLWISSQTDKAIKEGFANLK 150
Query: 165 KPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
+ ++ ++ R E D +G TR T + + ++ G Q+ TL V
Sbjct: 151 NSSKYDNLYKAARCRAEADWVVGLNITRALTCKYNAQ--------LTAGRVQSATLAMIV 202
Query: 223 ERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW----SRGHIFDKSTCNVFFKAVEKEKHV 278
R ++I+ FK + Y+++ N ++ W + +I++++ N A+ K K
Sbjct: 203 NREEEIKNFKAKDYFVI----NAKTKEFTLMWRDKNNNSNIYEENRVNKIL-AITKGKAA 257
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETT 337
++DV+ S K + P + EL R A+ G H + I +RLY ++YPRT++
Sbjct: 258 NIIDVRESYKKQYAPALYDLTELQRDANRIFGYSAKHTLSIMQRLYENYKILTYPRTDSR 317
Query: 338 QYPENFDLVAVLRQQESSPDWGDH---VREVLSNGISKPRKGKD---VGDHPPITPTK-L 390
D+V L+++ + G + E+L I+ + D V DH I PT+ +
Sbjct: 318 YIST--DIVDTLKERLKAISVGSYKIYASELLKTRINAHKGFVDNSKVSDHHAIIPTEEV 375
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF--- 447
T + L + +YD +V+ F+ + Y Q + E F K + G+
Sbjct: 376 LTLSLLSSEEKNIYDLVVKRFLAVMLPPFEYVQTSIITDINGENFIARGKVVKSKGWKKV 435
Query: 448 ----TGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK---- 499
V+ +N+ +P+ K GD I I S++ KT PP E L+S MEK
Sbjct: 436 YDIGNQVIEDDENENQILPELKKGDSIDIISIESRRLKTKPPARFNEGTLLSAMEKPQKY 495
Query: 500 --------------HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVH 540
GIGT A+ I + YV +G+ ++PTS G L+
Sbjct: 496 ISIDKLYAKTLGETGGIGTVATRADIIEKLFNMFYVE-KNGKDIIPTSKGKQLIE 549
>gi|422653051|ref|ZP_16715825.1| DNA topoisomerase I subunit omega [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330966108|gb|EGH66368.1| DNA topoisomerase I subunit omega [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 869
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 121/448 (27%), Positives = 196/448 (43%), Gaps = 32/448 (7%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
AKD + + L D D+EGE I + + EA+ R F+ IT K I+ A
Sbjct: 107 AKDADIIYLATDLDREGEAIAWHLREAIG-----GDDSRYKRVVFNEITKKAIQEAFSRP 161
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
+ +I + AR+ LD +G + K +G +S G Q+ + V
Sbjct: 162 GELDIARVNAQQARRFLDRVVGYMVSPLLWQKVARG---------LSAGRVQSVAVKLVV 212
Query: 223 ERHDKIRTFKPEPYWLL--DL-TLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
ER +IR F PE YW + DL T V V +G F A+EK K +
Sbjct: 213 EREREIRAFNPEEYWEIHADLGTAKGANVRFDVAREKGEAFKPLNEQQAMAALEKLKASS 272
Query: 280 VVDVQSSTK-SKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V+ K + +KP A T L + AS+ LG G M +A+RLY GY++Y RT++T
Sbjct: 273 YSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDST 332
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR---- 393
+ D V++ R + ++G +N S ++ H I P+ + T
Sbjct: 333 NL--SADAVSMARDYIET-EFGKKYLPEAANVYSSKEGAQEA--HEAIRPSDVNTHPSKL 387
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
T ++ DA RLY+ I R F+ Y + D + + L G+T +
Sbjct: 388 TSMERDAERLYELIWRQFVACQMLPAQYLSTTVTVAAGDFELRAKGRILKFDGYTRALPQ 447
Query: 454 SAM--KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
A ++ +PD G+++ + ++ + T PP +E+ L+ MEK GIG ++
Sbjct: 448 MAKPGDDDVLPDMAQGEVLKLNTLDPSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAI 507
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLV 539
I+ I R YV + + RR +G ++
Sbjct: 508 ISTIQDRGYVALHN-RRFYSEKMGDIVT 534
>gi|126699890|ref|YP_001088787.1| DNA topoisomerase III [Clostridium difficile 630]
gi|255101417|ref|ZP_05330394.1| DNA topoisomerase III [Clostridium difficile QCD-63q42]
gi|423092291|ref|ZP_17080095.1| DNA topoisomerase [Clostridium difficile 70-100-2010]
gi|115251327|emb|CAJ69159.1| DNA topoisomerase III [Clostridium difficile 630]
gi|357554249|gb|EHJ35974.1| DNA topoisomerase [Clostridium difficile 70-100-2010]
Length = 706
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 115/420 (27%), Positives = 188/420 (44%), Gaps = 37/420 (8%)
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK 165
D + +V+ D +EGE + ++E + Q+ K + R S+ TDK IK L
Sbjct: 96 DIDEIVIATDAGREGELVARWIIE--KSQV----KKPIKRLWISSSTDKAIKDGFAKLKS 149
Query: 166 PNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVE 223
+E S AR E D IG TR T + + +S G QTPTL ++
Sbjct: 150 GKEYENLYYSAIARAEADWIIGINATRALTTKYNAQ--------LSCGRVQTPTLAMLLK 201
Query: 224 RHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWS----RGHIFDKSTCNVFFKAVEKEKHVT 279
R ++IR FKP+ Y+ L+L + W+ F K K V K +
Sbjct: 202 REEEIRNFKPKEYYGLELIATKGNSDIKFIWNDKNNNSSTFSKEKIESTLKKV-KGVDIK 260
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQ 338
+ +V S K K P + EL R A+ G + I ++LY V +YPRT++
Sbjct: 261 ISEVNKSYKKKYSPALYDLTELQRDANKMFGFSAKETLSIMQKLYEHHKVLTYPRTDSRY 320
Query: 339 YPENFDLVAVLRQQESSPDWGDHV----REVLSNGISKPR--KGKDVGDHPPITPTKLAT 392
D+V L+ + + + D+ R + SN I+ V DH I PT+
Sbjct: 321 LTS--DIVGTLKDRIKAVNISDYSKICNRLLKSNIIANKSFVDNSKVTDHHAIIPTEQKV 378
Query: 393 RTQLDGDAWR-LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
D R +Y+ +V+ F+ L Y Q +V E+F + +++ G+
Sbjct: 379 FMSDFSDKERKIYNLVVKRFLAVLSPPFEYEQTTISATVEGEIFKAKGNKVINLGWK--E 436
Query: 452 TWSAMKNE----SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDAS 507
++ +++E SIP+ D++ ++ +K+ KT PP YL E L++ MEK+G+GT A+
Sbjct: 437 SYKDIEDEDEYESIPNVLEKDVLKVKGLKITSGKTNPPPYLNEGTLLTAMEKNGLGTVAT 496
>gi|153953693|ref|YP_001394458.1| DNA topoisomerase III [Clostridium kluyveri DSM 555]
gi|146346574|gb|EDK33110.1| TopA2 [Clostridium kluyveri DSM 555]
Length = 727
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 122/475 (25%), Positives = 206/475 (43%), Gaps = 61/475 (12%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLV 164
KD +++ D +EGE + ++E R + KTV R S+ TDK IK NL
Sbjct: 95 KDIGEIIIATDSGREGELVARWIIEKARVK------KTVKRLWISSQTDKAIKEGFANLK 148
Query: 165 KPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
+ ++ ++ R E D +G TR T + + ++ G Q+ TL V
Sbjct: 149 NSSKYDNLYKAARCRAEADWVVGLNITRALTCKYNAQ--------LTAGRVQSATLAMIV 200
Query: 223 ERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW----SRGHIFDKSTCNVFFKAVEKEKHV 278
R ++I+ FK + Y+++ N ++ W + +I++++ N A+ K K
Sbjct: 201 NREEEIKNFKAKDYFVI----NAKTKEFTLMWRDKNNNSNIYEENRVNKIL-AITKGKAA 255
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETT 337
++DV+ S K + P + EL R A+ G H + I +RLY ++YPRT++
Sbjct: 256 NIIDVRESYKKQYAPALYDLTELQRDANRIFGYSAKHTLSIMQRLYENYKILTYPRTDSR 315
Query: 338 QYPENFDLVAVLRQQESSPDWGDH---VREVLSNGISKPRKGKD---VGDHPPITPTK-L 390
D+V L+++ + G + E+L I+ + D V DH I PT+ +
Sbjct: 316 YIST--DIVDTLKERLKAISVGSYKIYASELLKTRINAHKGFVDNSKVSDHHAIIPTEEV 373
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF--- 447
T + L + +YD +V+ F+ + Y Q + E F K + G+
Sbjct: 374 LTLSLLSSEEKNIYDLVVKRFLAVMLPPFEYVQTSIITDINGENFIARGKVVKSKGWKKV 433
Query: 448 ----TGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK---- 499
V+ +N+ +P+ K GD I I S++ KT PP E L+S MEK
Sbjct: 434 YDIGNQVIEDDENENQILPELKKGDSIDIISIESRRLKTKPPARFNEGTLLSAMEKPQKY 493
Query: 500 --------------HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVH 540
GIGT A+ I + YV +G+ ++PTS G L+
Sbjct: 494 ISIDKLYAKTLGETGGIGTVATRADIIEKLFNMFYVE-KNGKDIIPTSKGKQLIE 547
>gi|217966040|ref|YP_002351718.1| DNA topoisomerase III [Listeria monocytogenes HCC23]
gi|386009537|ref|YP_005927815.1| DNA topoisomerase III [Listeria monocytogenes L99]
gi|386028160|ref|YP_005948936.1| topoisomerase III [Listeria monocytogenes M7]
gi|217335310|gb|ACK41104.1| DNA topoisomerase 3 (DNA topoisomerase III) [Listeria monocytogenes
HCC23]
gi|307572347|emb|CAR85526.1| DNA topoisomerase III [Listeria monocytogenes L99]
gi|336024741|gb|AEH93878.1| topoisomerase III [Listeria monocytogenes M7]
Length = 717
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 121/467 (25%), Positives = 206/467 (44%), Gaps = 45/467 (9%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVD----PLELFSCPTEKREATPKLKLPAFLAN 102
+ +T GH++ L + SKY NW+ D P ++ P ++ + + L N
Sbjct: 36 YVVTWALGHLVTLADPERYDSKYKNWNMEDLPMLPEKMKLEPI--KQTRKQYETVKKLMN 93
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMW 161
D +V+ D +EGE + +++ + I P K +W S++TDK I+
Sbjct: 94 RT-DITTIVIATDAGREGELVARWIIDYAK----IKKPLKRLW---ISSVTDKAIREGFE 145
Query: 162 NLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
+L +E S AR E D +G TR T + + +S G QTPTL
Sbjct: 146 HLKPGKAYENLYYSAVARSEADWVVGINATRALTTKYNAQ--------LSCGRVQTPTLA 197
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
R ++IR FKP Y+ + S TW+ G FDK+ K+++ E V
Sbjct: 198 MIQYREEEIRNFKPREYYGITALTEQE----SFTWNNGQTFDKALAEKLVKSLQGENAV- 252
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQ 338
+ DV K P + EL R A++ + I + LY + V +YPRT++
Sbjct: 253 ITDVSMKEKKNFSPGLYDLTELQRDANNRYDFSAKETLNIMQTLYERHKVLTYPRTDSRF 312
Query: 339 YPENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTKL-A 391
+ D+V L+++ ++ G++ R++ I + D V DH I PT+
Sbjct: 313 I--STDIVPTLKERLAACGVGENAKAARQISGKPIKANKSFVDNSKVSDHHAIIPTEQPV 370
Query: 392 TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
+ L ++YD +V+ F+ L +Y + K + E FT++ K + G+ +
Sbjct: 371 SLGDLSDKERKIYDLVVKRFLAVLSDPYIYEETSVKAKIGQEEFTLKGKVVKSLGWKSIY 430
Query: 452 TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
S ++ + K GD IP++ + + KT PP E+ L+S ME
Sbjct: 431 GESREPDQ-LTKMKKGDTIPVKRINLETGKTKPPARFNEATLLSAME 476
>gi|399521407|ref|ZP_10762147.1| DNA topoisomerase I [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399110645|emb|CCH38707.1| DNA topoisomerase I [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 868
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 127/449 (28%), Positives = 196/449 (43%), Gaps = 32/449 (7%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
AKD + + L D D+EGE I + + E++ R F+ IT K I+ A
Sbjct: 105 AKDADTIYLATDLDREGEAIAWHLRESIG-----GDDSRYKRVVFNEITKKAIQEAFSKP 159
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
+ +I + AR+ LD +G + K +G +S G Q+ + V
Sbjct: 160 GELDINRVNAQQARRFLDRVVGYMVSPLLWAKIARG---------LSAGRVQSVAVKLVV 210
Query: 223 ERHDKIRTFKPEPYWLL--DLTLNLNG-VAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
ER +IR F PE YW + DL N V V G F A+EK K +
Sbjct: 211 EREKEIRAFVPEEYWEVHADLGTAKNAKVRFEVVREGGAAFKPVNEAQAMAALEKLKASS 270
Query: 280 VVDVQSSTK-SKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V+ + + +KP A T L + AS+ LG G M +A+RLY GY++Y RT++T
Sbjct: 271 YSVVKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDST 330
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR-TQL 396
+ D V ++R S ++GD N S ++ H I P+ + R TQL
Sbjct: 331 NL--SNDAVEMVRGFIGS-EYGDKYLPGKPNLYSSKEGAQEA--HEAIRPSDVNLRPTQL 385
Query: 397 DG---DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
G DA RLYD I R F+ Y + D + + L G+T V+
Sbjct: 386 SGMERDAERLYDLIWRQFVACQMPPAEYLSTSVTVAAGDFELRAKGRILKFDGYTRVLPQ 445
Query: 454 SAMKNES--IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
+ E +P+ K G+ + + + + T PP +E+ L+ +EK GIG ++
Sbjct: 446 QSKPGEDDVLPEMKEGEGLKLIQLDPSQHFTKPPARYSEASLVKELEKRGIGRPSTYAAI 505
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLVH 540
I+ I R YVTV + RR +G ++
Sbjct: 506 ISTIQDRGYVTVHN-RRFYAEKMGDIVTE 533
>gi|296241915|ref|YP_003649402.1| DNA topoisomerase I [Thermosphaera aggregans DSM 11486]
gi|296094499|gb|ADG90450.1| DNA topoisomerase I [Thermosphaera aggregans DSM 11486]
Length = 686
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 115/452 (25%), Positives = 202/452 (44%), Gaps = 23/452 (5%)
Query: 109 FLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNI 168
+ V D D EG I + ++ + N P +RA+FS++T +++ A L + +
Sbjct: 120 YFVNACDYDIEGSVIGYLII-----KFN-GDPGRAYRAKFSSLTLSELREAFRRLTQLDY 173
Query: 169 FEARSVDARQELD----LRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVER 224
+ R ELD + + A R F + K ++S G QTPTL + +
Sbjct: 174 EMIEAGLCRHELDWLWGINVSRAIMRTVESFSKKKI------ILSAGRVQTPTLKYVSDI 227
Query: 225 HDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQ 284
+ F P P + + T+ +GV +++ I K + + +E +TV
Sbjct: 228 EKERNLFIPIPVYSVVPTIVKDGVKITLELINSPIRTKKDAYALAERIRREGFLTVESYV 287
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFD 344
T S P N +L A+ G P IAE+LY +SYPRT + + P D
Sbjct: 288 EHTTSVAPPPPFNLGDLQEEAARIYGYSPSKTQSIAEQLYLDALISYPRTNSQKLPSGLD 347
Query: 345 LVAVLRQQESSPDWGDHVREVL--SNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAW 401
++L + ++ V ++L + G KP +G K+ HP I PT + +L + W
Sbjct: 348 FKSLLTKISQISNYSALVSDLLKETKGYLKPVEGDKEDPAHPAIYPTGVRP-VKLSSEQW 406
Query: 402 RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADE--MFTMEAKYLLHPGFTGVMTWSAMKNE 459
+YD IVR F+ G+ + + AKF++ E +F + + G+ + +
Sbjct: 407 AVYDLIVRRFLAAFAGNAIIYRSTAKFALPGENIVFQATGQGIEDLGWYKYYPFHKPSVK 466
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
+P F+ G+ + + V + T PP +++ ++ ME IGT+A+ I + +R
Sbjct: 467 VLPRFRNGERVEVVEVSVKTAYTRPPQRISKIGMLRWMESVEIGTEATRATIIEKLFERK 526
Query: 520 YVTVTSGRRLVPTSLGIVLVHGYQKIDRELVE 551
Y+ TS R + T LG+ +V + ELV+
Sbjct: 527 YLVNTS-RGVAVTDLGLGIVETLEIFFPELVK 557
>gi|228989543|ref|ZP_04149527.1| DNA topoisomerase 3 [Bacillus pseudomycoides DSM 12442]
gi|228995737|ref|ZP_04155398.1| DNA topoisomerase 3 [Bacillus mycoides Rock3-17]
gi|228763981|gb|EEM12867.1| DNA topoisomerase 3 [Bacillus mycoides Rock3-17]
gi|228770080|gb|EEM18660.1| DNA topoisomerase 3 [Bacillus pseudomycoides DSM 12442]
Length = 730
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/418 (26%), Positives = 183/418 (43%), Gaps = 46/418 (11%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD +++ D +EGE + +++ V+ IN P K +W S++TDK IK NL
Sbjct: 95 KDVTEIIVATDAGREGELVARWIIDKVK----INKPIKRLW---ISSVTDKAIKDGFANL 147
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
+E S AR E D IG TR T F + ++ G QTPT+
Sbjct: 148 KPGKAYENLYASAVARSEADWYIGLNATRALTTRFNAQ--------LNCGRVQTPTVAII 199
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWS----RGHIFDKSTCNVFFKAVEKEKH 277
R D+I+ FK + Y+ ++ + +TW G FDK+ + K ++K+ +
Sbjct: 200 AGREDEIKNFKAQTYYGIEAQTT---DKLKLTWQDGKGNGRSFDKAKIDTIVKKLDKQ-N 255
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTET 336
TV +++ K P + EL R A+ G + I ++LY Q V +YPRT++
Sbjct: 256 ATVTEIEKKQKKSFAPGLYDLTELQRDANKIFGYSAKETLNIMQKLYEQHKVLTYPRTDS 315
Query: 337 TQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-------KDVGDHPPITPTK 389
D+V L ++ + G++ R + ++KP K V DH I PT+
Sbjct: 316 RYISS--DIVGTLPERLKACGVGEY-RPLAHKILNKPIKSTKAFVDDSKVSDHHAIIPTE 372
Query: 390 LATRTQLDGDAWR-LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
D R +YD +V+ F+ L Y Q + + DE F K +LH G+
Sbjct: 373 SYVNFSAFTDKERKIYDLVVKRFLAVLFPAFEYEQLTLRTKIGDETFVARGKTILHSGWK 432
Query: 449 GVM--------TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
V +K + +P + GD + ++ + +T PP E+ L+S ME
Sbjct: 433 EVYENRFEDDDAVEDLKEQILPRIEKGDTLSVKLIAQTSGQTKPPARFNEATLLSAME 490
>gi|340756108|ref|ZP_08692741.1| DNA topoisomerase I [Fusobacterium sp. D12]
gi|421500720|ref|ZP_15947712.1| DNA topoisomerase I [Fusobacterium necrophorum subsp. funduliforme
Fnf 1007]
gi|340573070|gb|EFS23695.2| DNA topoisomerase I [Fusobacterium sp. D12]
gi|402267274|gb|EJU16670.1| DNA topoisomerase I [Fusobacterium necrophorum subsp. funduliforme
Fnf 1007]
Length = 749
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 136/517 (26%), Positives = 218/517 (42%), Gaps = 75/517 (14%)
Query: 51 FKMTSVCGHI-------MGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANE 103
+++ + GHI MG+D + + +S K + KLK+ A AN+
Sbjct: 26 YEVAASFGHICDLPKTKMGVDVDNDFKT--------SYSTIKGKGDVVKKLKMQAKNANK 77
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
+ L D D+EGE I + + A++ + R F ITD+ I+ A+ N
Sbjct: 78 ------VYLASDPDREGEAIAWHIANALKLDKGEQN-----RIEFHEITDRAIREAVKN- 125
Query: 164 VKPNIFEARSVDARQE---LDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGF 220
P I + V+A+Q LD +G + + K + S G Q+ L
Sbjct: 126 --PRIIDTNKVNAQQARRVLDRLVGYEISPFLWKLI--------SPNTSAGRVQSVALKL 175
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNV-------FFKAVE 273
+ DKIR F PE YW D+ N S TW + K + K ++
Sbjct: 176 ICDLEDKIRKFVPEKYW--DVKGNFEQ---SWTWPLSKMDGKKVEKIKEESLVERVKLLQ 230
Query: 274 KEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT-------- 325
K+K TVV+ + S KSK P AL T L +++SS LG M +A++LY
Sbjct: 231 KQK-FTVVEAKISKKSKRPPLALKTSTLQQLSSSYLGFSASRTMMLAQKLYEGININGNH 289
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQES-SPDWGDHVREVLSNGISKPRKGKDVGDHPP 384
+G ++Y RT++T+ + +A E+ ++ V+E K K K H
Sbjct: 290 KGLITYMRTDSTRISQEAKEMAKSYITETFGKEYVTDVKE------KKESKQKIQDAHEA 343
Query: 385 ITPTKLATRTQ-----LDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA 439
I PT + + L+ D W+LY I F+ + + Y Q + F
Sbjct: 344 IRPTDVYVTPESLEKILEKDQWKLYKLIWERFLISELASMKYEQFEVVCEREEVQFRGSM 403
Query: 440 KYLLHPGFTGVMTWSAMKN-ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
+L G+ V N E P + GD + + +++ E T PP LTES L+ ++E
Sbjct: 404 NKILFDGYYKVFKEEEELNLEDFPKIEVGDQLELSKLEIKEDMTKPPARLTESSLVKMLE 463
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLG 535
GIG ++ I + +R Y+ V R +PT +G
Sbjct: 464 TEGIGRPSTYATIIETLKKREYI-VMEKRSFIPTEIG 499
>gi|404487839|ref|YP_006711945.1| DNA topoisomerase III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52346840|gb|AAU39474.1| DNA topoisomerase III [Bacillus licheniformis DSM 13 = ATCC 14580]
Length = 730
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 114/418 (27%), Positives = 187/418 (44%), Gaps = 48/418 (11%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD + +V+ D +EGE + ++E + + P K +W S++TDK IK NL
Sbjct: 98 KDVKDIVIATDAGREGELVARWIIEKAK----VTKPLKRLW---ISSVTDKAIKDGFKNL 150
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
FE S AR E D +G TR T F + +S G QTPTL
Sbjct: 151 KNGKDFENLYHSAVARAEADWIVGINATRALTTKFNAQ--------LSCGRVQTPTLAMI 202
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-----SRGHIFDKSTCNVFFKAVEKEK 276
+R + I+ FKP PY+ L ++ +++TW S+ F+ S + A++ K
Sbjct: 203 AKREEDIKNFKPVPYFGLRAAVD----GMTLTWQDKKTSQTRTFNASVTSQLAGALQG-K 257
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTE 335
+VD++ + K P + EL R A G + + ++LY Q V+YPRT+
Sbjct: 258 PAVIVDLKKTAKKSFAPGLYDLTELQRDAHKRFGFSAKETLSVLQKLYEQHKLVTYPRTD 317
Query: 336 TTQYPENFDLVAVLRQQ----ESSPDWGDHVREVLSNGISKPR---KGKDVGDHPPITPT 388
+++ N D+V L+ + + P + HV +L G+ + V DH I PT
Sbjct: 318 -SRFLSN-DIVPTLKDRLEGMQVKP-YAQHVARILKRGVKANKSFVNDAKVSDHHAIIPT 374
Query: 389 K--LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
+ LA L +LYD I + F+ L Y + + E FT + K + G
Sbjct: 375 EEPLALGA-LSEKERKLYDLIAKRFLAVLMPPFEYEETKVFAEIGGETFTAKGKTVQSQG 433
Query: 447 FTGVMTWS------AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
+ V ++ K++++P GD + ++S+ + +T PP E L+S ME
Sbjct: 434 WKAVYDFADEDDDEEEKDQTLPKLAKGDTLSVRSLTETKGETKPPARFNEGTLLSAME 491
>gi|422589793|ref|ZP_16664453.1| DNA topoisomerase I subunit omega [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330876685|gb|EGH10834.1| DNA topoisomerase I subunit omega [Pseudomonas syringae pv.
morsprunorum str. M302280]
Length = 869
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 121/448 (27%), Positives = 196/448 (43%), Gaps = 32/448 (7%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
AKD + + L D D+EGE I + + EA+ R F+ IT K I+ A
Sbjct: 107 AKDADIIYLATDLDREGEAIAWHLREAIG-----GDDSRYKRVVFNEITKKAIQEAFSRP 161
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
+ +I + AR+ LD +G + K +G +S G Q+ + V
Sbjct: 162 GELDIARVNAQQARRFLDRVVGYMVSPLLWQKVARG---------LSAGRVQSVAVKLVV 212
Query: 223 ERHDKIRTFKPEPYWLL--DL-TLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
ER +IR F PE YW + DL T V V +G F A+EK K +
Sbjct: 213 EREREIRAFNPEEYWEIHADLGTAKGANVRFDVAREKGEAFKPLNEKQAMAALEKLKASS 272
Query: 280 VVDVQSSTK-SKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V+ K + +KP A T L + AS+ LG G M +A+RLY GY++Y RT++T
Sbjct: 273 YSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDST 332
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR---- 393
+ D V++ R + ++G +N S ++ H I P+ + T
Sbjct: 333 NL--SADAVSMARDYIET-EFGKKYLPEAANVYSSKEGAQEA--HEAIRPSDVNTHPSKL 387
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
T ++ DA RLY+ I R F+ Y + D + + L G+T +
Sbjct: 388 TGMERDAERLYELIWRQFVACQMLPAQYLSTTVTVAAGDFELRAKGRILKFDGYTRALPQ 447
Query: 454 SAM--KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
A ++ +PD G+++ + ++ + T PP +E+ L+ MEK GIG ++
Sbjct: 448 MAKPGDDDVLPDMAQGEVLKLNTLDPSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAI 507
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLV 539
I+ I R YV + + RR +G ++
Sbjct: 508 ISTIQDRGYVALHN-RRFYSEKMGDIVT 534
>gi|163119233|ref|YP_077752.2| DNA topoisomerase III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|145902739|gb|AAU22114.2| DNA topoisomerase III [Bacillus licheniformis DSM 13 = ATCC 14580]
Length = 729
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 114/418 (27%), Positives = 187/418 (44%), Gaps = 48/418 (11%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD + +V+ D +EGE + ++E + + P K +W S++TDK IK NL
Sbjct: 97 KDVKDIVIATDAGREGELVARWIIEKAK----VTKPLKRLW---ISSVTDKAIKDGFKNL 149
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
FE S AR E D +G TR T F + +S G QTPTL
Sbjct: 150 KNGKDFENLYHSAVARAEADWIVGINATRALTTKFNAQ--------LSCGRVQTPTLAMI 201
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-----SRGHIFDKSTCNVFFKAVEKEK 276
+R + I+ FKP PY+ L ++ +++TW S+ F+ S + A++ K
Sbjct: 202 AKREEDIKNFKPVPYFGLRAAVD----GMTLTWQDKKTSQTRTFNASVTSQLAGALQG-K 256
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTE 335
+VD++ + K P + EL R A G + + ++LY Q V+YPRT+
Sbjct: 257 PAVIVDLKKTAKKSFAPGLYDLTELQRDAHKRFGFSAKETLSVLQKLYEQHKLVTYPRTD 316
Query: 336 TTQYPENFDLVAVLRQQ----ESSPDWGDHVREVLSNGISKPR---KGKDVGDHPPITPT 388
+++ N D+V L+ + + P + HV +L G+ + V DH I PT
Sbjct: 317 -SRFLSN-DIVPTLKDRLEGMQVKP-YAQHVARILKRGVKANKSFVNDAKVSDHHAIIPT 373
Query: 389 K--LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
+ LA L +LYD I + F+ L Y + + E FT + K + G
Sbjct: 374 EEPLALGA-LSEKERKLYDLIAKRFLAVLMPPFEYEETKVFAEIGGETFTAKGKTVQSQG 432
Query: 447 FTGVMTWS------AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
+ V ++ K++++P GD + ++S+ + +T PP E L+S ME
Sbjct: 433 WKAVYDFADEDDDEEEKDQTLPKLAKGDTLSVRSLTETKGETKPPARFNEGTLLSAME 490
>gi|261404795|ref|YP_003241036.1| DNA topoisomerase III [Paenibacillus sp. Y412MC10]
gi|261281258|gb|ACX63229.1| DNA topoisomerase III [Paenibacillus sp. Y412MC10]
Length = 712
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/541 (26%), Positives = 220/541 (40%), Gaps = 66/541 (12%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEKR-----EATPKLKLPAFLA 101
+ +T GH++GL D+ KY W D L P R E + + K L
Sbjct: 35 YIVTWALGHLVGLAEPEDYDKKYQTWALED---LPILPDNTRLKVLKETSHQFKTVQHLM 91
Query: 102 NEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAM 160
+ D +++ D +EGE + ++ + N P K +W S+ TDK IK
Sbjct: 92 KRS-DVGEMIIATDAAREGELLARWILRMAK----WNKPFKRLW---ISSQTDKAIKEGF 143
Query: 161 WNLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTL 218
+L F+ S R E D +G TR T F + +S G QTPTL
Sbjct: 144 ASLKPGQQFDRLYESARCRAEADWMVGLNVTRALTTKFNAQ--------LSAGRVQTPTL 195
Query: 219 GFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHV 278
G ++R +I F+ + Y L L V+ G +F+K + +E
Sbjct: 196 GMIMDREREIVNFRSQEYETLQADLGSFEVSWRPAGGDGRLFEKDKAAKLKQKLEGSTG- 254
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETT 337
+V V+ S K++ P A + EL R A+ G + +RLY Q V+YPRT++
Sbjct: 255 KIVSVKKSEKTEPHPLAYDLTELQRDANRRFGFSAKQTSNVLQRLYEQHKLVTYPRTDSR 314
Query: 338 QYPENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTKLA 391
D+V L+++ SS G + R +L +S ++ D V DH I PT+
Sbjct: 315 YL--TSDMVGTLKERLSSIAIGPYASIARPLLRKNLSPGKRVVDDSKVTDHHAIIPTEQT 372
Query: 392 TR-TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
QL D +LYD IVR FI Y + E + + G+ V
Sbjct: 373 VLLNQLSVDERKLYDLIVRRFISLFYPPARYDNVSVTVQIEGEQLYAKGTTIKDSGWREV 432
Query: 451 MTWS---------------AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELIS 495
+ + +P+ K G+ + + + +T PP E+ L+S
Sbjct: 433 YGGDYEDDTDDESDDGQGPSSSGKLLPELKEGESVKVVRCVLKPGRTQPPKRYNEAALLS 492
Query: 496 LMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMR 555
MEKHG+GT A+ I + + + G+ L PT G L+ ELV P +R
Sbjct: 493 QMEKHGLGTPATRADIIEKLVSSDTIE-RQGQTLHPTGKGKQLI--------ELVAPELR 543
Query: 556 S 556
+
Sbjct: 544 T 544
>gi|345020404|ref|ZP_08784017.1| DNA topoisomerase III [Ornithinibacillus scapharcae TW25]
Length = 725
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 132/471 (28%), Positives = 199/471 (42%), Gaps = 55/471 (11%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLV 164
KD +V+ D +EGE + ++E R + K V R S++TDK I+ L
Sbjct: 95 KDVNEIVIATDAGREGELVARWIIEKARVE------KPVKRLWISSVTDKAIRDGFKQLK 148
Query: 165 KPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
+E S AR E D +G TR T F + +S G QTPTLG
Sbjct: 149 PGKNYENLYASAVARSEADWYVGLNATRALTTKFNAQ--------LSSGRVQTPTLGMVA 200
Query: 223 ERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW----SRGHIFDKSTCNVFFKAVEKEKHV 278
R +I+ FKP+ Y+ + + NG+ TW + +F K + + K K +
Sbjct: 201 AREQEIKEFKPQTYYGIQAK-SKNGII--FTWQDQKNNTRMFSKEKADDLLGKL-KGKPL 256
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETT 337
VV + ++ K K PQ + EL R A+ G + + ++LY + V +YPRT++
Sbjct: 257 KVVKIDTTAKKKFAPQLYDLTELQRDANRIFGFSGKQTLSLMQKLYERHKVLTYPRTDSR 316
Query: 338 QYPENFDLVAVLRQQESSPD-WGDHVREVLSNGISK-PRKGKD---VGDHPPITPTKL-A 391
+ V R + D + + + +L GI K P+ D V DH I PT+ A
Sbjct: 317 VISTDIVPTLVDRLKACGVDQYANFAQSILRKGIGKLPKSVVDNAKVSDHHAIIPTEEPA 376
Query: 392 TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
LD R+YD +V+ F+ L Y Q + E FT K + G+ V
Sbjct: 377 ILEDLDDKERRIYDLVVKRFLAVLMDAYEYEQTTIHAEIQSESFTARGKVVKQQGWKTVY 436
Query: 452 TWSAMKNES----IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLM---------- 497
+ ES +P K GD SVK +T PP+ TE L+ M
Sbjct: 437 DRQFDEEESDDQRLPVIKQGDEYTNISVKQTTGETKPPERFTEGALLQAMENPVRYMNPD 496
Query: 498 EKH---------GIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
EKH GIGT A+ I+ + Y+ + G+ + TS G L+
Sbjct: 497 EKHLAGTLQKTGGIGTVATRADIIDKLFNGGYMEL-KGKHIFLTSKGKQLL 546
>gi|385806034|ref|YP_005842432.1| DNA topoisomerase III [Fervidicoccus fontis Kam940]
gi|383795897|gb|AFH42980.1| DNA topoisomerase III [Fervidicoccus fontis Kam940]
Length = 676
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 122/473 (25%), Positives = 213/473 (45%), Gaps = 28/473 (5%)
Query: 99 FLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKA 158
L+ +K V D D EG I + +++ + ++ R +FS +T +++
Sbjct: 100 LLSKLSKRASEYVNACDYDIEGSVIGYMIIKLLGNETKGK------RMKFSTLTKEEL-- 151
Query: 159 AMWNLVKPNIFEARSVDA---RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQT 215
+ + K F+ ++A R ELD G +R ++ G ++S G Q+
Sbjct: 152 -LNSFKKIGPFDYDMIEAGICRHELDWIWGINTSRALMHIYKQASGK--NIVLSSGRVQS 208
Query: 216 PTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHI---FD-KSTCNVFFKA 271
P L +R+ + R+F P + L + + S +S HI F+ K K
Sbjct: 209 PALIEVFDRYIEERSFFSPPKFQLTAVFSKD----SYKFSSSHISSPFEYKKDAEEAKKR 264
Query: 272 VEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSY 331
K V D++ + P N +L AS G P + +IAE LY +SY
Sbjct: 265 ALNVKRGNVSDIKEEKERIPPPPPFNLSDLQYEASRIYGFSPSYTQKIAEDLYLDVLISY 324
Query: 332 PRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISK-PRKG-KDVGDHPPITPTK 389
PRT + + P + +L ++ + EV S PR+G K+ HP I PT
Sbjct: 325 PRTNSQKLPPSIPHKNILENLSVLKEYEKQIEEVKKRNPSYIPRQGRKEDPAHPAIYPTG 384
Query: 390 LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVAD-EMFTMEAKYLLHPGFT 448
+ L GD +LYD IVR +I T DLV ++ K +V + ++F + G+
Sbjct: 385 KIPK-DLKGDKLKLYDLIVRRYISTFMDDLVLIKRRVKINVGERDVFETNGTIIESKGWL 443
Query: 449 GVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASI 508
+ ++ ++IP K D++ I+S+K+ + P T++ L+ ME IGT+A+
Sbjct: 444 KAYKFYTIE-KAIPSLKLNDIVSIESIKIASYYPSKPKLHTKTSLLKWMESQNIGTEATR 502
Query: 509 PVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
I + +R Y+ TS + ++PT LGIV+ +K EL + ++ ++ V+
Sbjct: 503 AQIIETLFKRGYLKSTS-KGIIPTKLGIVVSLALKKYVSELTDVSLTRSFEVR 554
>gi|417313962|ref|ZP_12100668.1| DNA topoisomerase III [Listeria monocytogenes J1816]
gi|328468233|gb|EGF39239.1| DNA topoisomerase III [Listeria monocytogenes J1816]
Length = 717
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 120/467 (25%), Positives = 205/467 (43%), Gaps = 45/467 (9%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVD----PLELFSCPTEKREATPKLKLPAFLAN 102
+ +T GH++ L + SKY NW+ D P ++ P ++ + + L N
Sbjct: 36 YVVTWALGHLVTLADPERYDSKYKNWNMEDLPMLPEKMKLEPI--KQTRKQYETVKKLMN 93
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMW 161
D +V+ D +EGE + +++ + I P K +W S++TDK I+
Sbjct: 94 RT-DITTIVIATDAGREGELVARWIIDYAK----IKKPLKRLW---ISSVTDKAIREGFE 145
Query: 162 NLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
+L +E S AR E D +G TR T + + +S G QTPTL
Sbjct: 146 HLKPGKAYENLYHSAVARSEADWVVGINATRALTTKYNAQ--------LSCGRVQTPTLA 197
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
R ++IR FKP Y+ + S TW+ G FDK+ K+++ E V
Sbjct: 198 MIQHREEEIRNFKPREYYGITALTEQE----SFTWNNGQTFDKALAEKLVKSLQGENAV- 252
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQ 338
+ DV K P + EL R A++ + I + LY + V +YPR ++
Sbjct: 253 ITDVSMKEKKNFSPGLYDLTELQRDANNRYDFSAKETLNIMQTLYERHKVLTYPRADSRF 312
Query: 339 YPENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTKL-A 391
+ D+V L+++ ++ G++ R++ I + D V DH I PT+
Sbjct: 313 I--STDIVPTLKERLAACGVGENAKAARQISGKPIKANKSFVDNSKVSDHHAIIPTEQPV 370
Query: 392 TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
+ L ++YD +V+ F+ L +Y + K + E FT++ K + G+ +
Sbjct: 371 SLGDLSDKERKIYDLVVKRFLAVLSDPYIYEETSVKAKIGQEEFTLKGKVVKSLGWKSIY 430
Query: 452 TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
S + + + K GD IP++ + + KT PP E+ L+S ME
Sbjct: 431 GES-REPDQLTKMKKGDTIPVKRINLETGKTKPPARFNEATLLSAME 476
>gi|146325791|sp|Q65N90.2|TOP3_BACLD RecName: Full=DNA topoisomerase 3; AltName: Full=DNA topoisomerase
III
Length = 727
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 114/418 (27%), Positives = 187/418 (44%), Gaps = 48/418 (11%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD + +V+ D +EGE + ++E + + P K +W S++TDK IK NL
Sbjct: 95 KDVKDIVIATDAGREGELVARWIIEKAK----VTKPLKRLW---ISSVTDKAIKDGFKNL 147
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
FE S AR E D +G TR T F + +S G QTPTL
Sbjct: 148 KNGKDFENLYHSAVARAEADWIVGINATRALTTKFNAQ--------LSCGRVQTPTLAMI 199
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-----SRGHIFDKSTCNVFFKAVEKEK 276
+R + I+ FKP PY+ L ++ +++TW S+ F+ S + A++ K
Sbjct: 200 AKREEDIKNFKPVPYFGLRAAVD----GMTLTWQDKKTSQTRTFNASVTSQLAGALQG-K 254
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTE 335
+VD++ + K P + EL R A G + + ++LY Q V+YPRT+
Sbjct: 255 PAVIVDLKKTAKKSFAPGLYDLTELQRDAHKRFGFSAKETLSVLQKLYEQHKLVTYPRTD 314
Query: 336 TTQYPENFDLVAVLRQQ----ESSPDWGDHVREVLSNGISKPR---KGKDVGDHPPITPT 388
+++ N D+V L+ + + P + HV +L G+ + V DH I PT
Sbjct: 315 -SRFLSN-DIVPTLKDRLEGMQVKP-YAQHVARILKRGVKANKSFVNDAKVSDHHAIIPT 371
Query: 389 K--LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
+ LA L +LYD I + F+ L Y + + E FT + K + G
Sbjct: 372 EEPLALGA-LSEKERKLYDLIAKRFLAVLMPPFEYEETKVFAEIGGETFTAKGKTVQSQG 430
Query: 447 FTGVMTWS------AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
+ V ++ K++++P GD + ++S+ + +T PP E L+S ME
Sbjct: 431 WKAVYDFADEDDDEEEKDQTLPKLAKGDTLSVRSLTETKGETKPPARFNEGTLLSAME 488
>gi|423680869|ref|ZP_17655708.1| DNA topoisomerase III [Bacillus licheniformis WX-02]
gi|383441975|gb|EID49684.1| DNA topoisomerase III [Bacillus licheniformis WX-02]
Length = 738
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 114/418 (27%), Positives = 187/418 (44%), Gaps = 48/418 (11%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD + +V+ D +EGE + ++E + + P K +W S++TDK IK NL
Sbjct: 106 KDVKDIVIATDAGREGELVARWIIEKTK----VTKPLKRLW---ISSVTDKAIKDGFKNL 158
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
FE S AR E D +G TR T F + +S G QTPTL
Sbjct: 159 KNGKDFENLYHSAVARAEADWIVGINATRALTTKFNAQ--------LSCGRVQTPTLAMI 210
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-----SRGHIFDKSTCNVFFKAVEKEK 276
+R + I+ FKP PY+ L ++ +++TW S+ F+ S + A++ K
Sbjct: 211 AKREEDIKNFKPVPYFGLRAAVD----GMTLTWQDKKTSQTRTFNASVTSQLAGALQG-K 265
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTE 335
+VD++ + K P + EL R A G + + ++LY Q V+YPRT+
Sbjct: 266 PAVIVDLKKTAKKSFAPGLYDLTELQRDAHKRFGFSAKETLSVLQKLYEQHKLVTYPRTD 325
Query: 336 TTQYPENFDLVAVLRQQ----ESSPDWGDHVREVLSNGISKPR---KGKDVGDHPPITPT 388
+++ N D+V L+ + + P + HV +L G+ + V DH I PT
Sbjct: 326 -SRFLSN-DIVPTLKDRLEGMQVKP-YAQHVARILKRGVKANKSFVNDAKVSDHHAIIPT 382
Query: 389 K--LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
+ LA L +LYD I + F+ L Y + + E FT + K + G
Sbjct: 383 EEPLALGA-LSEKERKLYDLIAKRFLAVLMPPFEYEETKVFAEIGGETFTAKGKTVQSQG 441
Query: 447 FTGVMTWS------AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
+ V ++ K++++P GD + ++S+ + +T PP E L+S ME
Sbjct: 442 WKAVYDFADEDDDEEEKDQTLPKLAKGDTLSVRSLTETKGETKPPARFNEGTLLSAME 499
>gi|407476805|ref|YP_006790682.1| DNA topoisomerase III [Exiguobacterium antarcticum B7]
gi|407060884|gb|AFS70074.1| DNA topoisomerase III [Exiguobacterium antarcticum B7]
Length = 705
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 139/532 (26%), Positives = 227/532 (42%), Gaps = 69/532 (12%)
Query: 52 KMTSVCGHIMGLD----FTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAF-----LAN 102
K+ GH+ L + +K+ W+ D L + + R + K K AF L N
Sbjct: 41 KLAYAVGHLCELQEPAHYDAKWKRWN-YDHLPIIPERFDYRLSRGKSK--AFQVIKKLLN 97
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWN 162
E + +++ D ++EGE I ++ N+ K + R S++T + + N
Sbjct: 98 E-RTTTSIIIASDAEREGEAIVRLILRLA------NNAKPIQRLWISSLTPQAVDHGFAN 150
Query: 163 LVK----PNIF-EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPT 217
L+ N+F EA S R D IG +R T + K A + S G QTPT
Sbjct: 151 LLDGKETENLFHEAMS---RACADWLIGMNASRAYTTLLKKKG---IADVFSLGRVQTPT 204
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKH 277
L VER +I TF+PE ++ ++ + I D+ V + K
Sbjct: 205 LSLIVEREKQIETFRPETFFEVEADFARYKGKYINAKKQTKITDRELAE---NIVARTKG 261
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRV-ASSGLGMGPHHAMQIAERLYTQGYVSYPRT-- 334
VV T+ KP ++ L++ AS G+G + IA++LY +G++SYPRT
Sbjct: 262 TAVVATIDKTEQVEKPPFWFSLSLLQTEASRRFGLGAKETLDIAQKLYIRGWISYPRTDS 321
Query: 335 ------ETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPR--KGKDVGDHPPIT 386
E +Q+P +L++ P++ + V N + R V DH I
Sbjct: 322 SFVSKDEASQFP------VILKRLLKQPEYTELTDIVTQNITNNKRYVNSAKVSDHYAII 375
Query: 387 PTKLA-TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHP 445
PT+ A +L G ++YD IVR F+ D + + F + L
Sbjct: 376 PTEEAGAVAKLSGRDAQVYDLIVRRFLAAFAPDARSEKTEIITEREQDRFITKGSRSLEL 435
Query: 446 GFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLM-------- 497
GF V+ A K +P + G +PI+S K++E++T PP TE LI M
Sbjct: 436 GFKQVLKIEA-KELDLPAVEIGQQMPIKSAKLLEKQTEPPKRYTEGTLILGMKTAGKVLE 494
Query: 498 --------EKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHG 541
E G+GT+A+ I+ + +R+Y+ V + + PT+ G +L+
Sbjct: 495 NELQAIMKEIEGLGTEATRAGIIDGLKRRDYIQVKK-KEIHPTAKGRILIEA 545
>gi|78776372|ref|YP_392687.1| DNA topoisomerase I [Sulfurimonas denitrificans DSM 1251]
gi|78496912|gb|ABB43452.1| DNA topoisomerase I [Sulfurimonas denitrificans DSM 1251]
Length = 743
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 122/461 (26%), Positives = 196/461 (42%), Gaps = 42/461 (9%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
AK + + + D D+EGE I + + A++ P + R F IT I+ A+ N
Sbjct: 71 AKKSDIIYIATDEDREGEAIGWHIAHAIKKD-----PAELPRIVFHEITKTAIENALLNA 125
Query: 164 VKPNIFEARSVDARQELDLRIGCAFT-RYQTKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
K ++ + AR+ LD +G + +K +G +S G Q+ TL V
Sbjct: 126 RKIDMDMVNAQQARRILDRVVGYKLSPLLSSKIQKG---------LSAGRVQSSTLKLVV 176
Query: 223 ERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGH------IFDKSTCNVFFKAVEKEK 276
+R +IR F E YW +D TL + S+ G I +K+ + K+V KE
Sbjct: 177 DREREIRAFVAEEYWTID-TLFAKDIEASLISHMGEKLSKLSITNKADASSIVKSV-KED 234
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY--------TQGY 328
+ +++ + P T L +VASS LG P M +A+ LY T G
Sbjct: 235 SFIISKIETKERRSATPPPFMTSTLQQVASSKLGFTPKKTMMVAQTLYEGVKTPSGTSGV 294
Query: 329 VSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPT 388
++Y RT++ L AV ES +G +K KG H I PT
Sbjct: 295 ITYMRTDSLNLAHE-ALTAVRGLIESR--FGKKYLPAEPKIYTKKAKGAQEA-HEAIRPT 350
Query: 389 KLA-----TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLL 443
LA + L D +LY I F+ D V+ Q+ FS A+ + + L
Sbjct: 351 MLAFTPEVAASFLKPDEIKLYRLIYERFVSCQMNDAVFEQQSIIFSGANNEYKAIGRKLT 410
Query: 444 HPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIG 503
GF +T + K++ +P G IQ ++ + T PP +E+ LI +E GIG
Sbjct: 411 FDGFYA-LTGAEDKDKLLPSLSEGQSAQIQKIESTQHFTEPPARYSEAALIKKLESEGIG 469
Query: 504 TDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQK 544
++ I + R YVT+ ++++PT + + +K
Sbjct: 470 RPSTYAPTIATLSNRTYVTIEK-KQIIPTEMAFTVTEILEK 509
>gi|424924079|ref|ZP_18347440.1| DNA topoisomerase I [Pseudomonas fluorescens R124]
gi|404305239|gb|EJZ59201.1| DNA topoisomerase I [Pseudomonas fluorescens R124]
Length = 876
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 128/450 (28%), Positives = 198/450 (44%), Gaps = 34/450 (7%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
AKD + + L D D+EGE I + + EA+ R F+ IT K I+ A
Sbjct: 107 AKDADTIYLATDLDREGEAIAWHLREAIG-----GDDSRYKRVVFNEITKKAIQEAFSEP 161
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
+ +I + AR+ LD +G + K +G +S G Q+ + V
Sbjct: 162 GELDIDRVNAQQARRFLDRVVGYMVSPLLWAKIARG---------LSAGRVQSVAVKLVV 212
Query: 223 ERHDKIRTFKPEPYWLL--DL-TLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
ER +IR F PE YW + DL T + V V +G F A+EK K +
Sbjct: 213 EREREIRAFNPEEYWEVHADLGTAKGSTVRFEVAREKGEAFKPLNEAQATAALEKLKSSS 272
Query: 280 VVDVQSSTK-SKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V+ K + +KP A T L + AS+ LG G M +A+RLY GY++Y RT++T
Sbjct: 273 YSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDST 332
Query: 338 QYPENFDLVAVLR---QQESSPDWGDHVREVLSN--GISKPRKGKDVGDHPPITPTKLAT 392
+ D VA+ R + E + V S+ G + + D TP+KLA
Sbjct: 333 NL--SADAVAMARTYIEDEFGKKYLPETPNVYSSKEGAQEAHEAIRPSDAN-TTPSKLAG 389
Query: 393 RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
++ DA RLY+ I R F+ Y + D + + L G+T VM
Sbjct: 390 ---MERDAERLYELIWRQFLACQMLPAQYLSTTVSVAAGDFELRAKGRILKFDGYTRVMP 446
Query: 453 WSAM--KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPV 510
A ++ +PD GD++ + + + T PP +E+ L+ MEK GIG ++
Sbjct: 447 QIAKPGDDDVLPDMAQGDVMKLIKLDPSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAA 506
Query: 511 HINNICQRNYVTVTSGRRLVPTSLGIVLVH 540
I+ I R YVT+ + RR +G ++
Sbjct: 507 IISTIQDRGYVTLHN-RRFYSEKMGDIVTE 535
>gi|354808168|ref|ZP_09041605.1| DNA topoisomerase III family protein [Lactobacillus curvatus CRL
705]
gi|354513345|gb|EHE85355.1| DNA topoisomerase III family protein [Lactobacillus curvatus CRL
705]
Length = 691
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 142/525 (27%), Positives = 230/525 (43%), Gaps = 53/525 (10%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVD----PLELFSCPTEKREATPKLKLPAFLAN 102
+ +T GH++ L D ++ W D P + P K +LK + LAN
Sbjct: 36 YVITWAFGHLLSLQLPEDIKKEWQQWRLEDLPIIPEHIGLKPLPKTGG--RLKAISHLAN 93
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWN 162
KD V+ D +EGE + ++E ++ K V R S+ T K IKA N
Sbjct: 94 R-KDISGAVIATDSGREGEAVARYILEWIKFD------KPVERLWISSQTTKAIKAGFAN 146
Query: 163 LVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGF 220
L F+ S AR + D IG TR T KY D +S G QTPTL F
Sbjct: 147 LKPAKQFDNLYASALARGKADWLIGLNVTRALTT----KYEDN----LSAGRVQTPTLAF 198
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTV 280
E +I FKP+ Y+ + LT++ A+ + + I + + +++ K V
Sbjct: 199 VNETAQQINRFKPQTYYTIHLTVDQQQAALQLANPQS-IKTRQAADDLVAQLQQAKG-QV 256
Query: 281 VDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY-TQGYVSYPRTETTQY 339
V V+++ KS++ P + EL +VA++ G+ + + + LY VSYPRT++
Sbjct: 257 VSVKTTQKSQSAPLPYDLTELQQVANAKYGLSAKKTLSLIQSLYEIHKVVSYPRTDSKYL 316
Query: 340 PENFDLVAVLRQQESS-PDWGDHVREVLSNGISKPRKG----KDVGDHPPITPTKLATRT 394
+ D+ L+++ S+ + ++ L G +K V DH + PT+ R
Sbjct: 317 --STDIEGTLKERLSALVKFDPRAKQYLGQGSQVKQKAVFNDGKVTDHYALIPTEEPVRA 374
Query: 395 Q-LDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
+ L D R+Y IV F+G V A D+ FT + ++ G W
Sbjct: 375 EKLSTDELRMYRLIVERFLGLFADPYVTAVTKATVKFGDQTFTFKQTKVVQQG------W 428
Query: 454 SAMKNESIP----DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
A E P D++ G ++ + + E+ TTPP LTE L+ ME +G+GT A+
Sbjct: 429 HAADKEGQPTATVDWREG-MVVRANFAVKEQLTTPPKPLTEGMLLGKMEHYGLGTPATRA 487
Query: 510 VHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
I + R+ + G L T G L+ + +++ LV P +
Sbjct: 488 EIIEKLV-RSELLERQGHALAVTPKGQQLL---KLVNQTLVSPEL 528
>gi|386045063|ref|YP_005963868.1| DNA topoisomerase III [Listeria monocytogenes 10403S]
gi|404412008|ref|YP_006697596.1| DNA topoisomerase III [Listeria monocytogenes SLCC5850]
gi|345538297|gb|AEO07737.1| DNA topoisomerase III [Listeria monocytogenes 10403S]
gi|404231834|emb|CBY53238.1| DNA topoisomerase III [Listeria monocytogenes SLCC5850]
Length = 717
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 122/468 (26%), Positives = 205/468 (43%), Gaps = 47/468 (10%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVD----PLELFSCPTEKREATPKLKLPAFLAN 102
+ +T GH++ L + SKY NW+ D P ++ P ++ + + L N
Sbjct: 36 YVVTWALGHLVTLADPERYDSKYKNWNMEDLPMLPEKMKLEPI--KQTRKQYETVKKLMN 93
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMW 161
D +V+ D +EGE + +++ + I P K +W S++TDK I+
Sbjct: 94 RT-DITTIVIATDAGREGELVARWIIDYAK----IKKPLKRLW---ISSVTDKAIREGFE 145
Query: 162 NLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
+L +E S AR E D +G TR T + + +S G QTPTL
Sbjct: 146 HLKPGKAYENLYHSAVARSEADWVVGINATRALTTKYNAQ--------LSCGRVQTPTLA 197
Query: 220 FCVERHDKIRTFKP-EPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHV 278
R ++IR FKP E Y + LT S TW+ G FDK+ K+++ E V
Sbjct: 198 MIQHREEEIRNFKPCEYYGITALTEQ-----ESFTWNNGQTFDKALAEKLVKSLQGENAV 252
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETT 337
+ DV K P + EL R A++ + I + LY + V +YPRT++
Sbjct: 253 -ITDVSMKEKKTFSPGLYDLTELQRDANNRYDFSAKETLNIMQTLYERHKVLTYPRTDSR 311
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKD------VGDHPPITPTKL- 390
+ D+V L+++ + G++ + + + K V DH I PT+
Sbjct: 312 FI--STDIVPTLKERLVACGVGENAKAARQISVKPIKANKSFVDNSKVSDHHAIIPTEQP 369
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
+ L ++YD +V+ F+ L +Y + K + E FT++ K + G+ +
Sbjct: 370 VSLGDLSDKERKIYDLVVKRFLAVLSDPYIYEETSVKAKIGQEEFTLKGKVVKSLGWKSI 429
Query: 451 MTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
S ++ + K GD IP++ + + KT PP E+ L+S ME
Sbjct: 430 YGESREPDQ-LTKMKKGDTIPVKRINLETGKTKPPARFNEATLLSAME 476
>gi|15669848|ref|NP_248662.1| DNA topoisomerase I [Methanocaldococcus jannaschii DSM 2661]
gi|14423964|sp|Q59046.1|TOP1_METJA RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|1592234|gb|AAB99673.1| DNA topoisomerase I (topA) {Bacillus subtilis [Methanocaldococcus
jannaschii DSM 2661]
Length = 761
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 112/460 (24%), Positives = 199/460 (43%), Gaps = 24/460 (5%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L +KD + + D D EGE I + A+++ K R RFS++T K+I A
Sbjct: 96 LKKLSKDADEFYIATDWDIEGELIGYH---ALKYCCGREKAK---RMRFSSLTKKEIVRA 149
Query: 160 MWNLVKPNIFEARSVDA---RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTP 216
N P+ + VDA R LD G +R + +S G Q P
Sbjct: 150 FEN---PDEIDYGLVDAGESRHILDWYFGINLSRALMNAIRAVN---RWKTMSVGRVQGP 203
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEK 276
L F ER +I+ F P+PYW+++ L N A+ + +++ ++ ++ EK
Sbjct: 204 ALAFLTERELEIKKFIPKPYWVIEALLKDNLKAIH---EKEKFWNEKEAKNVYEKIKDEK 260
Query: 277 HVTVVDVQSSTKSKTKP-QALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
VV+++ TK K KP + L R A S + P +IA++LY +SYPRT
Sbjct: 261 SAKVVEIKK-TKRKLKPLPPFDLGTLQREAYSYFKISPKETQEIAQKLYENALISYPRTS 319
Query: 336 TTQYPENFD-LVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRT 394
+ + P++ L +L ++ P +G +L + K+ HP I +
Sbjct: 320 SQKLPKDRKYLEDILNIIKNHPVYGKWAERILKENLKPVEGKKEDPAHPAIHIVDIPKEE 379
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
+ + +YD I R + + K + E F + + G+ + +
Sbjct: 380 LSEKEK-EIYDLIARRTLAAFWDNAEREYLNVKIDIKGEKFKLSGSRTVKEGWHEIYYFP 438
Query: 455 AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINN 514
+P K D+I ++ + + ++T PP T + +I +EK G+GT A+ I+
Sbjct: 439 KFDEIELPPLKKNDIIKVEKITITRKETQPPKRYTVASIIKELEKRGLGTKATRAEIIDK 498
Query: 515 ICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
+ +R YV ++ T LGI ++ ++ E+++ M
Sbjct: 499 LIKRGYVIDDGSLKV--TDLGISVIETLKRFCPEIIDEKM 536
>gi|30249913|ref|NP_841983.1| DNA topoisomerase III [Nitrosomonas europaea ATCC 19718]
gi|30180950|emb|CAD85877.1| topB; DNA topoisomerase III protein [Nitrosomonas europaea ATCC
19718]
Length = 832
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 151/548 (27%), Positives = 225/548 (41%), Gaps = 83/548 (15%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWD----KVDPLELFSCPTEKREATPKLKLPAFLAN 102
F ++S GH++ L ++ K W V P P EK T +LKL + L
Sbjct: 36 FVVSSAIGHLLELIVPEEYEVKRGKWSFDHLPVIPPRFDLAPIEK--TTDRLKLLSKLIK 93
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWN 162
KD + L+ D +EGE I + VRH + S K + R ++T I+ A N
Sbjct: 94 R-KDVDMLINACDAGREGELIFRYI---VRH---VGSKKPIKRLWLQSMTPSAIREAFAN 146
Query: 163 LVKPNIFEARSV-DA---RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTL 218
L+ N E +S+ DA R E D +G TR T F + G + + G QTPTL
Sbjct: 147 LL--NDAEVQSLADAAVSRSEADWLVGINGTRVMTAF-NSQEGGFHKTTV--GRVQTPTL 201
Query: 219 GFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-------------SRG-HIFDKST 264
VER + I+ F YW + T W SR I+D +
Sbjct: 202 AILVEREEAIKKFVVRDYWEVHATFQAESGVYKGKWFDEGFSKRKDESESRADRIWDHAK 261
Query: 265 CNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY 324
V VV +S + P + L R A+S G + +A+ LY
Sbjct: 262 AEVIRDKC--AGRTGVVTEESKPSRENCPLLYDLTSLQRDANSRFGFSAKVTLGLAQALY 319
Query: 325 TQGYV-SYPRTETTQYPENF-----DLVAVLRQQESSPDWGDHVREVLSNGISKPRK--- 375
+ V +YPRT++ PE++ D + VL+ + ++L + KP K
Sbjct: 320 EKHKVLTYPRTDSRALPEDYPAIVKDTLQVLK----GSRYDRFASQILESDWVKPNKRIF 375
Query: 376 -GKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTL--CGDLVYTQKVAKFSVAD 432
V DH I PT L + +L+ +LYD + + F+ + + T ++ + V +
Sbjct: 376 NNAKVSDHFAIIPTALVPK-KLNEAEEKLYDLVTKRFLAIFYPAAEFLITTRITR--VEN 432
Query: 433 EMFTMEAKYLLHPG----FTGVMTWSAMKNESI-PDFKPGDLIPIQSVKMVERKTTPPDY 487
E F E K L+H G + V + + ES+ PG+ + Q V +V KT PP
Sbjct: 433 EPFKTEGKVLVHAGWQTVYGKVESAQGQEEESVLVAVTPGETVLAQEVAVVAGKTRPPAR 492
Query: 488 LTESELISLME----------------KHGIGTDASIPVHINNICQRNYVTVTSGRRLVP 531
ES L+S ME G+GT A+ I + NYV SGR L P
Sbjct: 493 YNESTLLSAMEGAGKLVEDEELRAAMSAKGLGTPATRAAIIEGLIHENYVE-RSGRELQP 551
Query: 532 TSLGIVLV 539
T+ LV
Sbjct: 552 TAKAFSLV 559
>gi|429766244|ref|ZP_19298518.1| DNA topoisomerase [Clostridium celatum DSM 1785]
gi|429185224|gb|EKY26213.1| DNA topoisomerase [Clostridium celatum DSM 1785]
Length = 730
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 141/559 (25%), Positives = 237/559 (42%), Gaps = 81/559 (14%)
Query: 53 MTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAK--- 105
+T GH++GL + +KY W K+D L + P + K F NE K
Sbjct: 38 VTWAMGHLVGLMDPEGYDNKYKEW-KMDTLPML--PKHMKLVVLKKTGKQF--NEVKRLM 92
Query: 106 ---DCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMW 161
D +V+ D +EGE + ++E + ++ P K +W S+ TDK I
Sbjct: 93 NRDDVVEIVIATDAGREGELVARWIIE----KAGVHKPLKRLW---ISSQTDKAILDGFK 145
Query: 162 NLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
NL +E R+ R E D +G TR T + + +S G Q+PTL
Sbjct: 146 NLKDGKAYENLYRAAVCRAEADWLVGLNVTRALTCKYNAQ--------LSAGRVQSPTLA 197
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW----SRGHIFDKSTCNVFFKAVEKE 275
V+R ++I+ FKP+ Y+ T++ ++ W + IFD+ N + K
Sbjct: 198 MIVQREEEIKNFKPKTYY----TISAKTKGYNLAWVNKDNNSRIFDEEFANKIVYKI-KN 252
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY-TQGYVSYPRT 334
+V++ SS K K P + EL R A+ G + I +RLY ++YPRT
Sbjct: 253 AEGEIVNISSSNKKKFAPALYDLTELQRDANKIFGYSAKQTLNIMQRLYENHKILTYPRT 312
Query: 335 ETTQYPENFDLVAVLRQQESSPDWGDH---VREVLSNGISKPRKGKD---VGDHPPITPT 388
++ D+VA + + + G++ E+L ++ + D V DH I PT
Sbjct: 313 DSRYITT--DIVATIPDRLKAIAIGEYRITANELLKTKVNGNKSFVDNSKVSDHHAIIPT 370
Query: 389 KLATR-TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
+ + L + ++YD +V+ F+ L YTQ + SV +E F + K +L G+
Sbjct: 371 EEKPNLSNLTSEERKIYDLVVKRFLSVLLPPFEYTQTTIEGSVENERFIAKGKVILSKGW 430
Query: 448 TGVMTWSAMKN-------ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK- 499
+ +N + +P GD I++V + + T PP E L+S ME
Sbjct: 431 KKLYDKLEEENLEDDIREQVLPKVNKGDRFTIENVSINKGTTKPPARFNEGTLLSAMENP 490
Query: 500 -----------------HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGY 542
G+GT A+ I + ++V G+ ++PTS G L+
Sbjct: 491 HKYINVGKDAAKTLGETGGLGTVATRADIIEKLFN-SFVIEKRGKEIIPTSKGNQLI--- 546
Query: 543 QKIDRELVEPTMRSAYRVQ 561
+ + EL P + + + Q
Sbjct: 547 ELVPAELKSPILTARWERQ 565
>gi|28210156|ref|NP_781100.1| DNA topoisomerase III [Clostridium tetani E88]
gi|28202592|gb|AAO35037.1| DNA topoisomerase I [Clostridium tetani E88]
Length = 730
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 124/475 (26%), Positives = 199/475 (41%), Gaps = 62/475 (13%)
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNLV 164
D + +V+ D +EGE + ++E R +N P K +W S+ TDK I NL
Sbjct: 96 DIDEIVIATDAGREGELVARWIIEKAR----VNKPIKRLW---ISSQTDKAIIDGFNNLK 148
Query: 165 KPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
+E +S R E D +G TR T + + +S G QTPTL V
Sbjct: 149 PGKDYENLYKSAVCRSEADWLVGLNVTRALTCKYNAQ--------LSAGRVQTPTLALIV 200
Query: 223 ERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHI--FDKSTCNVFFKAVEKEKHVTV 280
ER ++I+ FKP Y+ ++ G+ + +G + F++ N V E V
Sbjct: 201 EREEEIKNFKPRDYY--NIVAKTKGIQFNWQDKKGQMATFNEDFANNILAKVSGEIG-NV 257
Query: 281 VDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQY 339
+V K + P + EL R A+ G + I +RLY V +YPRT++
Sbjct: 258 TEVIEKDKKQYAPALYDLTELQRDANRIFGYSAKETLSIMQRLYENHKVLTYPRTDSRYI 317
Query: 340 PENFDLVAVLRQQESSPDWGDHVR---EVLSNGISKPRKGKD---VGDHPPITPTKLATR 393
+ D+VA + Q+ S G + + E+L I + D V DH I PT+ +
Sbjct: 318 SK--DIVATIPQRLKSISIGIYSKFAEEILRGKIVAHKGFVDDSKVSDHHAIIPTEERVK 375
Query: 394 -TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
+ L GD ++YD +++ F+ + Y Q K V E+F + K + H G+ V
Sbjct: 376 LSNLSGDERKIYDLVIKRFLSVMLPPFEYIQTTIKVEVNGEVFIAKGKNIKHNGWKAVYN 435
Query: 453 ----------WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK--- 499
+K + +P GD I V + + +T PP E L+S ME
Sbjct: 436 KEDLNEDNNDGDGLKEQVLPQIIKGDAIKFNLVNINKGQTKPPARFNEGTLLSAMENPQK 495
Query: 500 ---------------HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
G+GT A+ I + Y+ G+ ++PTS G ++
Sbjct: 496 YIKLNKEYAKTLGETGGLGTVATRADIIEKLYNSFYIE-KKGKEIIPTSKGKQII 549
>gi|423101219|ref|ZP_17088923.1| DNA topoisomerase [Listeria innocua ATCC 33091]
gi|370792334|gb|EHN60211.1| DNA topoisomerase [Listeria innocua ATCC 33091]
Length = 717
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 121/467 (25%), Positives = 204/467 (43%), Gaps = 45/467 (9%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVD----PLELFSCPTEKREATPKLKLPAFLAN 102
+ +T GH++ L + KY NW+ D P ++ P ++ + + L N
Sbjct: 36 YVVTWALGHLVTLADPERYDPKYKNWNMEDLPMLPEKMKLEPI--KQTRKQYETVKKLMN 93
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMW 161
D +V+ D +EGE + +++ + I P K +W S++TDK I+
Sbjct: 94 RT-DITTIVIATDAGREGELVARWIIDYAK----IKKPLKRLW---ISSVTDKAIREGFE 145
Query: 162 NLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
+L N +E S AR E D +G TR T + + +S G QTPTL
Sbjct: 146 HLKPGNAYENLYHSAVARSEADWVVGINATRALTTKYNAQ--------LSCGRVQTPTLA 197
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
R ++IR FKP Y+ + S TW+ G FDK K+++ E +
Sbjct: 198 MIQHREEEIRNFKPREYYRITALTEQE----SFTWNNGQTFDKDLAEKLVKSLQGETAL- 252
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQ 338
+ DV K P + EL R A++ + I + LY + V +YPRT++
Sbjct: 253 ITDVAMKEKKTFSPGLYDLTELQRDANNRYDFSAKETLNIMQTLYERHKVLTYPRTDSRF 312
Query: 339 YPENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTKL-A 391
+ D+V L+++ + G++ R++ I + D V DH I PT+
Sbjct: 313 I--STDIVPTLKERLEACGVGENAKAARQISGKPIKANKSFVDNSKVSDHHAIIPTEQPV 370
Query: 392 TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
+ L ++YD +V+ F+ L +Y + K + E FT++ K + G+ +
Sbjct: 371 SLGDLSDKERKIYDLVVKRFLAVLSDPYIYEETSVKAKIGQEDFTLKGKVVKSLGWKSIY 430
Query: 452 TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
A + + + K GD IP++ V + KT PP E+ L+S ME
Sbjct: 431 -GEAREPDQLTKMKKGDKIPVKRVNLETGKTKPPARFNEATLLSAME 476
>gi|422299269|ref|ZP_16386842.1| DNA topoisomerase I [Pseudomonas avellanae BPIC 631]
gi|407988876|gb|EKG31301.1| DNA topoisomerase I [Pseudomonas avellanae BPIC 631]
Length = 869
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 121/448 (27%), Positives = 196/448 (43%), Gaps = 32/448 (7%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
AKD + + L D D+EGE I + + EA+ R F+ IT K I+ A
Sbjct: 107 AKDADIIYLATDLDREGEAIAWHLREAIG-----GDDSRYKRVVFNEITKKAIQEAFSRP 161
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
+ +I + AR+ LD +G + K +G +S G Q+ + V
Sbjct: 162 GELDIARVNAQQARRFLDRVVGYMVSPLLWQKVARG---------LSAGRVQSVAVKLVV 212
Query: 223 ERHDKIRTFKPEPYWLL--DL-TLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
ER +IR F PE YW + DL T V V +G F A+EK K +
Sbjct: 213 EREREIRAFNPEEYWEIHADLGTAKGANVRFDVAREKGEAFKPLNEKQAMAALEKLKASS 272
Query: 280 VVDVQSSTK-SKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V+ K + +KP A T L + AS+ LG G M +A+RLY GY++Y RT++T
Sbjct: 273 YSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDST 332
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR---- 393
+ D V++ R + ++G +N S ++ H I P+ + T
Sbjct: 333 NL--SADAVSMGRDYIET-EFGKKYLPEAANVYSSKEGAQEA--HEAIRPSDVNTHPSKL 387
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
T ++ DA RLY+ I R F+ Y + D + + L G+T +
Sbjct: 388 TGMERDAERLYELIWRQFVACQMLPAQYLSTTVTVAAGDFELRAKGRILKFDGYTRALPQ 447
Query: 454 SAM--KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
A ++ +PD G+++ + ++ + T PP +E+ L+ MEK GIG ++
Sbjct: 448 MAKPGDDDVLPDMAQGEVLKLNTLDPSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAI 507
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLV 539
I+ I R YV + + RR +G ++
Sbjct: 508 ISTIQDRGYVALHN-RRFYSEKMGDIVT 534
>gi|373857756|ref|ZP_09600496.1| DNA topoisomerase III [Bacillus sp. 1NLA3E]
gi|372452427|gb|EHP25898.1| DNA topoisomerase III [Bacillus sp. 1NLA3E]
Length = 697
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 138/527 (26%), Positives = 228/527 (43%), Gaps = 52/527 (9%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEK------REATPKLKLPAFLANEA 104
+ +T GH++ L Y+ K LE +K ++ + + K LA +
Sbjct: 35 YIVTWALGHLIELKMPEHYDASYKTWRLEDLPIIPDKMGIKVMKQTSHQFKAIETLAKRS 94
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
EF++ D +EGE + ++ +I P K +W S+ TD+ I+ NL
Sbjct: 95 DIKEFIIA-TDAGREGELVARWIL----AKIGWRKPLKRLW---ISSQTDRAIREGFQNL 146
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
+ FE +S R E D IG TR T F +S G QTPTL
Sbjct: 147 KPGSQFEDLYQSAVCRAEADWLIGLNVTRALTTKFNDP--------LSAGRVQTPTLAMV 198
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-SRGH--IFDKSTCNVFFKAVEKEKHV 278
+E+ + I+ F P+PYW +D + + W S G IF T + +K +
Sbjct: 199 IEQENTIQKFVPKPYWTIDSQVG----PLKADWESNGEKRIFALETAEKIQTKINNQKAL 254
Query: 279 TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETT 337
+ ++ KS+ +P + EL + A+ G + + +RLY Q V+YPRT++
Sbjct: 255 -ISAIERKQKSEQQPLPYDLTELQQDANKRFGFSAKKTLTVLQRLYEQYKLVTYPRTDSR 313
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNG----ISKPRKGKDVGDHPPITPTKLATR 393
++ + + R + S + D VR +L+ K + V DH I PT+
Sbjct: 314 YLTKDMEATMLDRLEGISSGYRDEVRPLLATKGRVLAKKVFNNEKVTDHHAIIPTEQRLN 373
Query: 394 -TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
+ L D +LYD IVR F+ Y A F+V E + ++ PGF +
Sbjct: 374 LSDLPTDERKLYDIIVRRFLALFYPPYQYETIHAVFTVNGETLKAKETIVIEPGFKKITG 433
Query: 453 WSAMKNESIPDFKPGDLIPIQSVKMV-----ERKTTPPDYLTESELISLMEKHGIGTDAS 507
K++ P L+ QS+ + ++ T PP L+E+++++ MEK G+GT A+
Sbjct: 434 ----KHDDSPKLNLSQLVKGQSLSVKASVSEQKLTEPPLRLSEADILAKMEKFGLGTPAT 489
Query: 508 IPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
I I + V +G RL P+ G L Y+ ++ EL P +
Sbjct: 490 RAEIIERIIETEVVERQNG-RLYPSRKGKQL---YELVNEELKSPEL 532
>gi|395648375|ref|ZP_10436225.1| DNA topoisomerase I subunit omega [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 873
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 127/449 (28%), Positives = 193/449 (42%), Gaps = 32/449 (7%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
AKD + + L D D+EGE I + + EA+ R F+ IT K I+ A
Sbjct: 107 AKDADTIYLATDLDREGEAIAWHLREAIG-----GDDSRYKRVVFNEITKKAIQEAFSKP 161
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
+ +I + AR+ LD +G + K +G +S G Q+ + V
Sbjct: 162 GELDIDRVNAQQARRFLDRVVGYMVSPLLWAKIARG---------LSAGRVQSVAVKLVV 212
Query: 223 ERHDKIRTFKPEPYWLL--DL-TLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
ER +IR F PE YW + DL T V V +G F A+EK K +
Sbjct: 213 EREREIRAFNPEEYWEVHADLGTAKGANVRFEVAREKGEAFKPLNEAQAMAALEKLKSSS 272
Query: 280 VVDVQSSTK-SKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V+ K + +KP A T L + AS+ LG G M +A+RLY GY++Y RT++T
Sbjct: 273 YSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDST 332
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR-TQL 396
+ D VA+ R S ++G N S ++ H I P+ T ++L
Sbjct: 333 NLSQ--DAVAMARTYIES-EFGKKYLPEKPNVYSSKEGAQEA--HEAIRPSDANTEPSKL 387
Query: 397 DG---DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
G DA RLY+ I R F+ Y D + + L G+T VM
Sbjct: 388 SGMERDAERLYELIWRQFLACQMLPAQYLSTTVSVGAGDFELRAKGRILKFDGYTRVMPQ 447
Query: 454 SAM--KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
A ++ +PD GD + + + + T PP +E+ L+ MEK GIG ++
Sbjct: 448 IAKPGDDDVLPDMAQGDTLKLIKLDPSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAI 507
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLVH 540
I+ I R YV + + RR +G ++
Sbjct: 508 ISTIQDRGYVALHN-RRFYSEKMGDIVTE 535
>gi|42557740|emb|CAF28714.1| putative DNA topoisomerase I [uncultured crenarchaeote]
Length = 715
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 114/452 (25%), Positives = 196/452 (43%), Gaps = 28/452 (6%)
Query: 115 DCDKEGENICFEVME-AVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARS 173
D D EGE I + ++E A +H+ + RA+FS++TD +I + NL + +I A +
Sbjct: 122 DYDLEGELIGYNILEYACKHKY-----EQSRRAKFSSLTDSEINQSFNNLQQTDIRIAEA 176
Query: 174 VDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKP 233
AR +D G +R D +S G Q PTLGF V+R KIR P
Sbjct: 177 GKARHLVDFVFGINLSRALVNCLSVANQDNRYYNLSIGRVQGPTLGFIVDREIKIRKHVP 236
Query: 234 EPYWLLDLTLNLNGVAVSVTWSRG-HIFDK-----STCNVFFKAVEKEKHVTVVDVQSST 287
+P W + + + S H F + +TC K T+ V T
Sbjct: 237 DPVWYITGNFQKDNSSFQANLSTAIHKFSEMQKILATC--------KNGKATIKTVICQT 288
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF---D 344
K P N +L + A + P IAE LY +SYPRT + + P +
Sbjct: 289 KKVNPPTPFNLSDLQKEAFRIFKLSPAVTHSIAESLYLAALISYPRTSSKKLPSSIGYEK 348
Query: 345 LVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRL 403
++ +L + ++ D + ++E+L P +G ++ HP I PT L + +L ++
Sbjct: 349 ILNLLSKNYATAD-KNKIQELLMQKYLVPFQGIEEDPAHPAIYPTGLKHK-KLSVQQSKI 406
Query: 404 YDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT-WSAMKNESIP 462
D I++ F+ T + +V+ F + +L+ G+ + + ++K +P
Sbjct: 407 LDLIIKRFLATFGDGALTNFSEVIITVSGYDFIAKGNTILNYGWIPLYEPYFSIKETRLP 466
Query: 463 DFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT 522
GD V +E T P ++ ++ ME GIGT ++ +N + +RNY+
Sbjct: 467 HLVKGDSAQTNEVTALEDFTKPVARYNQASILEKMESEGIGTKSTRAETVNLLIKRNYI- 525
Query: 523 VTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
+ L PT LG ++ +K ++V +
Sbjct: 526 LQHKIGLEPTVLGFTILDTMKKFIPDIVSTKL 557
>gi|213969027|ref|ZP_03397167.1| DNA topoisomerase I [Pseudomonas syringae pv. tomato T1]
gi|301385412|ref|ZP_07233830.1| DNA topoisomerase I [Pseudomonas syringae pv. tomato Max13]
gi|302061392|ref|ZP_07252933.1| DNA topoisomerase I [Pseudomonas syringae pv. tomato K40]
gi|422657211|ref|ZP_16719653.1| DNA topoisomerase I subunit omega [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|213926326|gb|EEB59881.1| DNA topoisomerase I [Pseudomonas syringae pv. tomato T1]
gi|331015786|gb|EGH95842.1| DNA topoisomerase I subunit omega [Pseudomonas syringae pv.
lachrymans str. M302278]
Length = 869
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 121/448 (27%), Positives = 196/448 (43%), Gaps = 32/448 (7%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
AKD + + L D D+EGE I + + EA+ R F+ IT K I+ A
Sbjct: 107 AKDADTIYLATDLDREGEAIAWHLREAIG-----GDDSRYKRVVFNEITKKAIQEAFSRP 161
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
+ +I + AR+ LD +G + K +G +S G Q+ + V
Sbjct: 162 GELDIARVNAQQARRFLDRVVGYMVSPLLWQKVARG---------LSAGRVQSVAVKLVV 212
Query: 223 ERHDKIRTFKPEPYWLL--DL-TLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
ER +IR F PE YW + DL T V V +G F A+EK K +
Sbjct: 213 EREREIRAFNPEEYWEIHADLGTAKGANVRFDVAREKGEAFKPLNEKQAMAALEKLKASS 272
Query: 280 VVDVQSSTK-SKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V+ K + +KP A T L + AS+ LG G M +A+RLY GY++Y RT++T
Sbjct: 273 YSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDST 332
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR---- 393
+ D V++ R + ++G +N S ++ H I P+ + T
Sbjct: 333 NL--SADAVSMARDYIET-EFGKKYLPEAANVYSSKEGAQEA--HEAIRPSDVNTHPSKL 387
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
T ++ DA RLY+ I R F+ Y + D + + L G+T +
Sbjct: 388 TGMERDAERLYELIWRQFVACQMLPAQYLSTTVTVAAGDFELRAKGRILKFDGYTRALPQ 447
Query: 454 SAM--KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
A ++ +PD G+++ + ++ + T PP +E+ L+ MEK GIG ++
Sbjct: 448 MAKPGDDDVLPDMAQGEVLKLNTLDPSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAI 507
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLV 539
I+ I R YV + + RR +G ++
Sbjct: 508 ISTIQDRGYVALHN-RRFYSEKMGDIVT 534
>gi|299535053|ref|ZP_07048379.1| DNA topoisomerase III [Lysinibacillus fusiformis ZC1]
gi|424737907|ref|ZP_18166354.1| DNA topoisomerase III [Lysinibacillus fusiformis ZB2]
gi|298729549|gb|EFI70098.1| DNA topoisomerase III [Lysinibacillus fusiformis ZC1]
gi|422948191|gb|EKU42576.1| DNA topoisomerase III [Lysinibacillus fusiformis ZB2]
Length = 729
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 128/489 (26%), Positives = 207/489 (42%), Gaps = 59/489 (12%)
Query: 42 GPLFGDLVLFKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEKREATPKLKLP 97
G L GD + +T GH++ L + KY W+ D L P + K
Sbjct: 29 GFLEGDKYI--VTWALGHLVTLADPESYDVKYKTWNLED---LPMLPERLKLTVIKQTGK 83
Query: 98 AFLANEAK----DCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAIT 152
F A +++ D +++ D +EGE + +++ V+ I P K +W S++T
Sbjct: 84 QFNAVKSQLTRNDVNEIIIATDAGREGELVARWILDKVK----IKKPLKRLW---ISSVT 136
Query: 153 DKDIKAAMWNLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISY 210
DK IK NL N ++ S AR E D IG TR T F + ++
Sbjct: 137 DKAIKDGFANLKPGNAYDNLYASAVARSEADWYIGLNATRALTTRFNAQ--------LNC 188
Query: 211 GPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW----SRGHIFDKSTCN 266
G QTPT+ R D+I+ FK + Y+ ++ N + +TW FDK N
Sbjct: 189 GRVQTPTVAIIAAREDEIKNFKAQTYYGIEAQTTDN---LKLTWQDQNGNSRSFDKDKIN 245
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
K + + V D++ K P + EL R A+ G + I ++LY Q
Sbjct: 246 TLVKKIGNSNAI-VADIEKKPKKSFAPGLYDLTELQRDANKIFGYSAKETLNIMQKLYEQ 304
Query: 327 GYV-SYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRK-------GKD 378
V +YPRT++ + D+VA L ++ + G++ R + + ++KP K
Sbjct: 305 HKVLTYPRTDSRFISQ--DIVATLPERLKACGIGEY-RSIANKLLTKPIKPTKAFVDDSK 361
Query: 379 VGDHPPITPTKLATRTQLDGDAWR-LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTM 437
V DH I PT+ D R +YD +V+ F+ L Y Q + + DE F
Sbjct: 362 VSDHHAIIPTEGYVNYSAFTDKERKIYDLVVKRFLAVLLPAFEYEQLTLRAKIGDESFIA 421
Query: 438 EAKYLLHPGFTGVM--------TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLT 489
K +L G+ V T +K + +P GD++ ++ + +T PP
Sbjct: 422 RGKTILSSGWKEVYEHRFDDEDTADDVKEQILPRIDKGDILKVKLLAQTSGQTKPPARFN 481
Query: 490 ESELISLME 498
E+ L+S ME
Sbjct: 482 EATLLSAME 490
>gi|28870675|ref|NP_793294.1| DNA topoisomerase I [Pseudomonas syringae pv. tomato str. DC3000]
gi|28853923|gb|AAO56989.1| DNA topoisomerase I [Pseudomonas syringae pv. tomato str. DC3000]
Length = 869
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 121/448 (27%), Positives = 196/448 (43%), Gaps = 32/448 (7%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
AKD + + L D D+EGE I + + EA+ R F+ IT K I+ A
Sbjct: 107 AKDADTIYLATDLDREGEAIAWHLREAIG-----GDDSRYKRVVFNEITKKAIQEAFSRP 161
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
+ +I + AR+ LD +G + K +G +S G Q+ + V
Sbjct: 162 GELDIARVNAQQARRFLDRVVGYMVSPLLWQKVARG---------LSAGRVQSVAVKLVV 212
Query: 223 ERHDKIRTFKPEPYWLL--DL-TLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
ER +IR F PE YW + DL T V V +G F A+EK K +
Sbjct: 213 EREREIRAFNPEEYWEIHADLGTAKGANVRFDVAREKGEAFKPLNEKQAMAALEKLKASS 272
Query: 280 VVDVQSSTK-SKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V+ K + +KP A T L + AS+ LG G M +A+RLY GY++Y RT++T
Sbjct: 273 YSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDST 332
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR---- 393
+ D V++ R + ++G +N S ++ H I P+ + T
Sbjct: 333 NL--SADAVSMARDYIET-EFGKKYLPEAANVYSSKEGAQEA--HEAIRPSDVNTHPSKL 387
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
T ++ DA RLY+ I R F+ Y + D + + L G+T +
Sbjct: 388 TGMERDAERLYELIWRQFVACQMLPAQYLSTTVTVAAGDFELRAKGRILKFDGYTRALPQ 447
Query: 454 SAM--KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
A ++ +PD G+++ + ++ + T PP +E+ L+ MEK GIG ++
Sbjct: 448 MAKPGDDDVLPDMAQGEVLKLNTLDPSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAI 507
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLV 539
I+ I R YV + + RR +G ++
Sbjct: 508 ISTIQDRGYVALHN-RRFYSEKMGDIVT 534
>gi|339481941|ref|YP_004693727.1| DNA topoisomerase III [Nitrosomonas sp. Is79A3]
gi|338804086|gb|AEJ00328.1| DNA topoisomerase III [Nitrosomonas sp. Is79A3]
Length = 836
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 139/567 (24%), Positives = 243/567 (42%), Gaps = 76/567 (13%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWD----KVDPLELFSCPTEKREATPKLKLPAFLAN 102
+ ++S GH++ L ++ K W V P P EK + +LKL + L
Sbjct: 36 YVVSSAVGHLLELAIPEEYEVKRGKWSFANLPVIPPHFDLNPIEK--TSSRLKLLSKLIK 93
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMW 161
KD + L+ D +EGE I + ++ RH + N P K +W ++T I+
Sbjct: 94 R-KDIDTLINACDAGREGELIFYYIL---RH-VGTNKPVKRLW---LQSMTPDAIREGFT 145
Query: 162 NLVKPNIFE--ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
L+ + + A + +R E D +G TR T F + G + + G QTPTL
Sbjct: 146 KLLDNSEVQSLAEAAVSRSESDWLVGINGTRAMTAF-NSQEGGFHKTTV--GRVQTPTLA 202
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAV---EKEK 276
VER +KI+ F+P+ YW + T + + W F K N K E++K
Sbjct: 203 ILVEREEKIKKFRPQDYWEIHATFAASNGNYNGKWF-DEKFSKDKVNQELKPERLWEQKK 261
Query: 277 HVTV----------VDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+ V+ +S + P + L R A+S G + +A+ LY +
Sbjct: 262 AEVIRDKCQGKPGQVNEESKPSKEICPLLYDLTSLQREANSRFGFSAKTTLGLAQALYEK 321
Query: 327 GYV-SYPRTETTQYPENFDLVAVLR---QQESSPDWGDHVREVLSNGISKPRK----GKD 378
V +YPRT++ PE D +A ++ Q + D+G +++L++ P K
Sbjct: 322 HKVLTYPRTDSRALPE--DYIATVKDTVQSLGNTDYGKFAQQILASNWVIPNKRIFNNAK 379
Query: 379 VGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTL--CGDLVYTQKVAKFSVADEMFT 436
+ DH I PT L +L+ ++YD + + F+ + + T ++ + V +E F
Sbjct: 380 ISDHFAIIPTSL-NPAKLNEAEAKIYDLVTKRFLAIFFPAAEFLITTRITR--VENEPFR 436
Query: 437 MEAKYLLHPGFTGVMTWSAMKNE-----SIPDFKPGDLIPIQSVKMVERKTTPPDYLTES 491
E K +++PG+ V SA ++ ++ PG+ + + + ++ +T PP E+
Sbjct: 437 TEGKVMVNPGWQAVYGKSAKLDDLEDDTTLAAITPGESVITEEINVIANQTRPPARFNEA 496
Query: 492 ELISLME----------------KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLG 535
L+S ME G+GT A+ I + NY+ GR L PT+
Sbjct: 497 TLLSAMEGAGKLVEDEELRAAMSAKGLGTPATRAAIIEGLVFENYLQRV-GRELHPTAKA 555
Query: 536 IVLVHGYQKID-RELVEPTMRSAYRVQ 561
L+ + + EL+ P + + Q
Sbjct: 556 FSLITLLRGLKIPELISPELTGNWEFQ 582
>gi|410637094|ref|ZP_11347682.1| DNA topoisomerase I [Glaciecola lipolytica E3]
gi|410143473|dbj|GAC14887.1| DNA topoisomerase I [Glaciecola lipolytica E3]
Length = 878
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 120/450 (26%), Positives = 202/450 (44%), Gaps = 33/450 (7%)
Query: 91 TPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSA 150
T K K+ L AK+ + + L D D+EGE I + + E + + KT R F+
Sbjct: 94 TGKEKVVNELKKLAKEADTIYLATDLDREGEAIAWHLQELLGSK-----GKTYQRVVFNE 148
Query: 151 ITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISY 210
IT I+ A + + NI + AR+ LD +G + K A +S
Sbjct: 149 ITKNAIQEAFADPGQLNIARVNAQQARRFLDRVVGFMVSPLLWKKV--------ARGLSA 200
Query: 211 GPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSR--GHIF---DKSTC 265
G Q+ + VER +I+ F PE +W + LN N A+ + ++ G F +K+
Sbjct: 201 GRVQSVAVRLVVEREREIKAFVPEEFWDIHADLNANQAALRMLVAKHLGSAFKPVNKAQA 260
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLY 324
+ +A++K + + + S +++KP A T L + AS+ LG G M +A+RLY
Sbjct: 261 DTALEALKKADYEVIS--RESKPTQSKPSAPFITSTLQQAASTRLGFGVKKTMMMAQRLY 318
Query: 325 TQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPP 384
G+++Y RT++T + D V R S D + + +N IS K H
Sbjct: 319 EAGHITYMRTDSTNLSQ--DAVNACR---SYIDDNFGAKYLPNNPISYGSKEGAQEAHEA 373
Query: 385 ITPTKLATR----TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
I P+ + + T+++ DA RLY+ I R F+ Y K + + +
Sbjct: 374 IRPSNVVVKSESLTEVERDAQRLYELIWRQFVACQMVPAKYDASTIKVKAGEYELVAKGR 433
Query: 441 YLLHPGFTGVMTWSAMKNE---SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLM 497
L G+T V T K + ++PD K G + ++++ + T P E+ L+ +
Sbjct: 434 VLKFDGWTRVQTQVKGKGDNDLNLPDVKEGQKLDLKALDPKQHFTKPIARFNEASLVKEL 493
Query: 498 EKHGIGTDASIPVHINNICQRNYVTVTSGR 527
EK GIG ++ I+ I R YV + + R
Sbjct: 494 EKRGIGRPSTYASIISTIQDRGYVKLDNKR 523
>gi|302129982|ref|ZP_07255972.1| DNA topoisomerase I [Pseudomonas syringae pv. tomato NCPPB 1108]
Length = 869
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 121/448 (27%), Positives = 196/448 (43%), Gaps = 32/448 (7%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
AKD + + L D D+EGE I + + EA+ R F+ IT K I+ A
Sbjct: 107 AKDADTIYLATDLDREGEAIAWHLREAIG-----GDDSRYKRVVFNEITKKAIQEAFSRP 161
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
+ +I + AR+ LD +G + K +G +S G Q+ + V
Sbjct: 162 GELDIARVNAQQARRFLDRVVGYMVSPLLWQKVARG---------LSAGRVQSVAVKLVV 212
Query: 223 ERHDKIRTFKPEPYWLL--DL-TLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
ER +IR F PE YW + DL T V V +G F A+EK K +
Sbjct: 213 EREREIRAFNPEEYWEIHADLGTAKGANVRFDVAREKGEAFKPLNEKQAMAALEKLKASS 272
Query: 280 VVDVQSSTK-SKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V+ K + +KP A T L + AS+ LG G M +A+RLY GY++Y RT++T
Sbjct: 273 YSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDST 332
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR---- 393
+ D V++ R + ++G +N S ++ H I P+ + T
Sbjct: 333 NL--SADAVSMARDYIET-EFGKKYLPEAANVYSSKEGAQEA--HEAIRPSDVNTHPSKL 387
Query: 394 TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
T ++ DA RLY+ I R F+ Y + D + + L G+T +
Sbjct: 388 TGMERDAERLYELIWRQFVACQMLPAQYLSTTVTVAAGDFELRAKGRILKFDGYTRALPQ 447
Query: 454 SAM--KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
A ++ +PD G+++ + ++ + T PP +E+ L+ MEK GIG ++
Sbjct: 448 MAKPGDDDVLPDMAQGEVLKLNTLDPSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAI 507
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLV 539
I+ I R YV + + RR +G ++
Sbjct: 508 ISTIQDRGYVALHN-RRFYSEKMGDIVT 534
>gi|229589079|ref|YP_002871198.1| DNA topoisomerase I [Pseudomonas fluorescens SBW25]
gi|229360945|emb|CAY47805.1| DNA topoisomerase I [Pseudomonas fluorescens SBW25]
Length = 873
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 127/449 (28%), Positives = 193/449 (42%), Gaps = 32/449 (7%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
AKD + + L D D+EGE I + + EA+ R F+ IT K I+ A
Sbjct: 107 AKDADTIYLATDLDREGEAIAWHLREAIG-----GDDSRYKRVVFNEITKKAIQEAFSKP 161
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
+ +I + AR+ LD +G + K +G +S G Q+ + V
Sbjct: 162 GELDIDRVNAQQARRFLDRVVGYMVSPLLWAKIARG---------LSAGRVQSVAVKLVV 212
Query: 223 ERHDKIRTFKPEPYWLL--DL-TLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
ER +IR F PE YW + DL T V V +G F A+EK K +
Sbjct: 213 EREREIRAFNPEEYWEVHADLGTAKGANVRFEVAREKGEAFKPLNEAQAMAALEKLKASS 272
Query: 280 VVDVQSSTK-SKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V+ K + +KP A T L + AS+ LG G M +A+RLY GY++Y RT++T
Sbjct: 273 YSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDST 332
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR-TQL 396
+ D VA+ R S ++G N S ++ H I P+ T ++L
Sbjct: 333 NL--SVDAVAMARTYIES-EFGKKYLPEKPNVYSSKEGAQEA--HEAIRPSDANTEPSKL 387
Query: 397 DG---DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
G DA RLY+ I R F+ Y D + + L G+T VM
Sbjct: 388 SGMERDAERLYELIWRQFLACQMLPAQYLSTTVSVGAGDFELRAKGRILKFDGYTRVMPQ 447
Query: 454 SAM--KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
A ++ +PD GD + + + + T PP +E+ L+ MEK GIG ++
Sbjct: 448 IAKPGDDDVLPDMAQGDTLKLIKLDPSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAI 507
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLVH 540
I+ I R YV + + RR +G ++
Sbjct: 508 ISTIQDRGYVALHN-RRFYSEKMGDIVTE 535
>gi|116874119|ref|YP_850900.1| DNA topoisomerase III [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742997|emb|CAK22121.1| DNA topoisomerase III [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 717
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 120/467 (25%), Positives = 205/467 (43%), Gaps = 45/467 (9%)
Query: 51 FKMTSVCGHIMGL----DFTSKYNNWDKVD----PLELFSCPTEKREATPKLKLPAFLAN 102
+ +T GH++ L + SKY NW+ D P ++ P ++ + + L N
Sbjct: 36 YVVTWALGHLVTLADPERYDSKYKNWNMEDLPMLPEKMKLEPI--KQTRKQYETVKKLMN 93
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMW 161
D +V+ D +EGE + +++ + I P K +W S++TDK I+
Sbjct: 94 RT-DITTIVIATDAGREGELVARWIIDYAK----IKKPLKRLW---ISSVTDKAIREGFE 145
Query: 162 NLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
+L +E S AR E D +G TR T + + +S G QTPTL
Sbjct: 146 HLKPGKAYENLYHSAVARSEADWVVGINATRALTTKYNAQ--------LSCGRVQTPTLA 197
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVT 279
R ++IR F+P Y+ + TW+ G FDK+ K+++ E V
Sbjct: 198 MIQHREEEIRNFQPREYYRITAQTEQE----CFTWNIGQTFDKALAEKLVKSLQGENAV- 252
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQ 338
+ DV K P + EL R A++ + I + LY + V +YPRT++
Sbjct: 253 ITDVSMKEKKTFSPGLYDLTELQRDANNRYDFSAKETLNIMQTLYERHKVLTYPRTDSRF 312
Query: 339 YPENFDLVAVLRQQESSPDWGDHV---REVLSNGISKPRKGKD---VGDHPPITPTKL-A 391
+ D+V L+++ ++ G++ R++ I + D V DH I PT+
Sbjct: 313 I--STDIVPTLKERLTACGVGENAKAARQISGKPIKANKSFVDNSKVSDHHAIIPTEQPV 370
Query: 392 TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM 451
+ L ++YD +V+ F+ L +Y + K + E FT++ K + G+ +
Sbjct: 371 SLGDLSDKERKIYDLVVKRFLAVLSDPYIYEETSVKAKIGQEDFTLKGKVIKSLGWKSIY 430
Query: 452 TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
A + + + K GD IP++ V + KT PP E+ L+S ME
Sbjct: 431 G-EAREPDQLTKMKKGDTIPVKRVNLETGKTKPPARFNEATLLSAME 476
>gi|357489373|ref|XP_003614974.1| DNA topoisomerase [Medicago truncatula]
gi|355516309|gb|AES97932.1| DNA topoisomerase [Medicago truncatula]
Length = 302
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 154/303 (50%), Gaps = 23/303 (7%)
Query: 53 MTSVCGHIMGLDFTSKYNN-WDKVDPLELFSCPTEKREAT--PKLKLPAFLANEAKDCEF 109
S GHI F + +N W++ + +L S T + K+ + L +EAK C++
Sbjct: 10 FASTNGHIKETKFEKQSDNVWNEGNTKKLLSPETVVVRSVLGDKIDVENKLRDEAKKCKW 69
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT----DKDIKAAMWNLVK 165
LVLW D D EGE I +EV E Q N V RARFS++ D IK ++ +L
Sbjct: 70 LVLWFDNDPEGEYIAYEVHEICVQQ---NYEIIVKRARFSSLNPTAVDATIKTSLDDL-N 125
Query: 166 PNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERH 225
P + +A V R+E+D + G +TR+Q+ + + + +SYG CQ+ LG VER
Sbjct: 126 PCLLDA--VAYRKEVDFKTGRVWTRFQSFLARKQIPNATNLTLSYGLCQSALLGIVVERF 183
Query: 226 DKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFD-KSTCNVFFKAVEKEKHVTVVDV- 283
+++ K + Y +++ N G VT++ +D KS + ++ EK T+V+V
Sbjct: 184 NQVAKPKAQKY---NISFNDRGYGPKVTFTSPVWYDAKSKASKKLQSCSDEK-ATIVEVF 239
Query: 284 ----QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQY 339
K + P L T+EL ++A+ M P M AE LYTQG+++YPRTET +
Sbjct: 240 VEITNKFNKFHSPPVPLTTMELEKLAAKYFKMTPKQTMNTAEDLYTQGFINYPRTETDGF 299
Query: 340 PEN 342
N
Sbjct: 300 SMN 302
>gi|70607128|ref|YP_255998.1| DNA topoisomerase I [Sulfolobus acidocaldarius DSM 639]
gi|449067368|ref|YP_007434450.1| DNA topoisomerase I [Sulfolobus acidocaldarius N8]
gi|449069638|ref|YP_007436719.1| DNA topoisomerase I [Sulfolobus acidocaldarius Ron12/I]
gi|68567776|gb|AAY80705.1| DNA topoisomerase I family A [Sulfolobus acidocaldarius DSM 639]
gi|449035876|gb|AGE71302.1| DNA topoisomerase I [Sulfolobus acidocaldarius N8]
gi|449038146|gb|AGE73571.1| DNA topoisomerase I [Sulfolobus acidocaldarius Ron12/I]
Length = 668
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 113/443 (25%), Positives = 203/443 (45%), Gaps = 21/443 (4%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
+KD + + D D EG I + ++ + K RA+FSA+T +DI + NL
Sbjct: 100 SKDAQEFINACDYDIEGSLIGYLIINF------LGDIKRAKRAKFSALTKEDILNSFRNL 153
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI-SYGPCQTPTLGFCV 222
+ + AR ++D G +R + Y +I S G Q+PTL +
Sbjct: 154 KPLDYDMIHAGIARHKVDWLWGINVSR---ALMKSVYTLTRKRVILSAGRVQSPTLIHVI 210
Query: 223 ERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVD 282
K F P PY+ ++LT+NL +T + +K+ + + ++K VTV +
Sbjct: 211 NNTVKRELFVPLPYYSINLTINLKNKEFKITIPKT-FENKNEAKQYLEEIKKVGEVTVTN 269
Query: 283 VQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPEN 342
++ +P N +L A G P+ ++AE LY G +SYPRT + + P +
Sbjct: 270 IELKDAVIYRPPPFNLTDLQLEAGRLFGYSPYLVERLAENLYLNGLISYPRTNSQKIPPS 329
Query: 343 FDLVAVLRQQESSPDWGDHVREV--LSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGD 399
++ ++ S +G + + ++ G R+G KD HP I PT LD
Sbjct: 330 VNIYQIIDSLSKSKRYGSLINTLSQITKGKYIVRQGEKDDPAHPAIYPTG-ELPYNLDTK 388
Query: 400 AWRLYDYIVRHFIGTLCGDL-VYTQKVA-KFSVADEMFTMEAKYLLHPGFTGVMTWSAMK 457
+LY+ I+R F+ ++ D V Q++ + D + + L++ G+ + ++
Sbjct: 389 ELKLYELILRRFLASMSTDARVRKQEITLRIPKVDIELKLNIQSLIYKGWIILYPYTKFS 448
Query: 458 NESIPDFKPGDLIPIQSVKMVERKTTPPD--YLTESELISLMEKHGIGTDASIPVHINNI 515
+E + D K GD I K T PD +++ +L+ ME + +GT+A+ I +
Sbjct: 449 DEELLDVKKGDKGRIVRANST-MKVTKPDTQRVSKIQLLKWMESNNLGTEATRGRIIETL 507
Query: 516 CQRNYVTVTSGRRLVPTSLGIVL 538
+R Y+ ++ G+ PT +GIV+
Sbjct: 508 FKRKYL-MSKGKYAYPTPIGIVV 529
>gi|70930089|ref|XP_737007.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56512031|emb|CAH87300.1| hypothetical protein PC302419.00.0 [Plasmodium chabaudi chabaudi]
Length = 271
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 117/214 (54%), Gaps = 5/214 (2%)
Query: 348 VLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTK-LATRTQLDGDAWRLYD 405
++ + + + +G + ++ NG KPRKGK + HPPI P K + +D W++Y+
Sbjct: 2 IIHELKKNNIFGSYAAKLAENGSCKPRKGKLNDKAHPPIHPVKNMNKANNVDFKEWKIYE 61
Query: 406 YIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFK 465
+I RHF+ D + ++ E F + + + + + + ++ +P F+
Sbjct: 62 FICRHFLAVCSDDAIGFDTKVVANIGAEQFYCKGLKIKNKNYLEIYIYEKWNDKILPPFQ 121
Query: 466 PGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS 525
D S+ + E T PP YL+ES+L+SLM+K+GIGTDA++ HI NI +RNYV S
Sbjct: 122 INDEFYPYSLIVEEGITQPPKYLSESDLLSLMDKYGIGTDATMHEHIENIQKRNYVYKNS 181
Query: 526 GRRLVPTSLGIVLVHGYQK---IDRELVEPTMRS 556
+PT LGI L+ Y+K I +L EP++R+
Sbjct: 182 KNLFIPTKLGIALILSYKKFKDIGVDLTEPSLRA 215
>gi|172056998|ref|YP_001813458.1| DNA topoisomerase III [Exiguobacterium sibiricum 255-15]
gi|171989519|gb|ACB60441.1| DNA topoisomerase III [Exiguobacterium sibiricum 255-15]
Length = 705
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 121/465 (26%), Positives = 200/465 (43%), Gaps = 56/465 (12%)
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVK---- 165
+++ D ++EGE I ++ N+ K + R S++T + + NL+
Sbjct: 104 IIIASDAEREGEAIVRLILRLA------NNAKPIQRLWISSLTPQAVDHGFANLLDGKET 157
Query: 166 PNIF-EARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVER 224
N+F EA S R D IG +R T + K A + S G QTPTL VER
Sbjct: 158 ENLFHEAMS---RACADWLIGMNASRAYTTLLKKKG---IADVFSLGRVQTPTLSLIVER 211
Query: 225 HDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQ 284
+I F+PE ++ ++ + I ++S V + V
Sbjct: 212 EKQIENFRPETFFEVEADFTRYTGKYINPKKQTKITERSLAEAI---VARTTGTGTVAAV 268
Query: 285 SSTKSKTKPQALNTVELMRV-ASSGLGMGPHHAMQIAERLYTQGYVSYPRT--------E 335
T+ KP ++ L++ AS G+G + IA++LY +G++SYPRT E
Sbjct: 269 EKTEQVEKPPFWFSLSLLQTEASRRFGLGAKETLDIAQKLYIRGWISYPRTDSSFVSKDE 328
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPR--KGKDVGDHPPITPTKLA-T 392
+Q+P A+L + P++ + V +N ++ R V DH I PT+ A
Sbjct: 329 ASQFP------AILNRLLKQPEYTELTDLVTNNLMNNKRYVNSAKVSDHYAIIPTEEAGA 382
Query: 393 RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMT 452
+L G ++YD IVR F+ D + + F + L GF V+
Sbjct: 383 VAKLSGRDAQVYDLIVRRFLAAFAADARSEKTEIITEREQDRFLTKGSRSLELGFKKVLK 442
Query: 453 WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLM--------------- 497
A K + +P + G +PI+ K++E++T PP TE LI M
Sbjct: 443 IEA-KEQELPAVEVGQPVPIKGAKLLEKQTEPPKRYTEGTLILGMKTAGKVLENELQAIM 501
Query: 498 -EKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHG 541
E G+GT+A+ I+ + +R Y+ V + L PT+ G +L+
Sbjct: 502 KEIEGLGTEATRAGIIDGLKRREYIQVKK-KELHPTAKGRILIEA 545
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,115,513,061
Number of Sequences: 23463169
Number of extensions: 380966727
Number of successful extensions: 791013
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4619
Number of HSP's successfully gapped in prelim test: 5026
Number of HSP's that attempted gapping in prelim test: 763373
Number of HSP's gapped (non-prelim): 11884
length of query: 562
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 414
effective length of database: 8,886,646,355
effective search space: 3679071590970
effective search space used: 3679071590970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)