BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8714
(562 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O95985|TOP3B_HUMAN DNA topoisomerase 3-beta-1 OS=Homo sapiens GN=TOP3B PE=1 SV=1
Length = 862
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/542 (62%), Positives = 403/542 (74%), Gaps = 5/542 (0%)
Query: 25 LTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-C 83
L+ + +NGACSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS
Sbjct: 26 LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQA 85
Query: 84 PTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPK 141
PTEK+EA PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N K
Sbjct: 86 PTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKAHGGEK 145
Query: 142 TVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYG 201
TV+RARFS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG
Sbjct: 146 TVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYG 205
Query: 202 DLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIF 260
DLD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +F
Sbjct: 206 DLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVF 265
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D+ +F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ A
Sbjct: 266 DREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTA 325
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG 380
ERLYTQGY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D G
Sbjct: 326 ERLYTQGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAG 385
Query: 381 DHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
DHPPITP K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E+FT K
Sbjct: 386 DHPPITPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPELFTCSGK 445
Query: 441 YLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
+L PGFT VM W ++ ES+P + GD P+ VKM+E++T PPDYLTE+ELI+LMEK
Sbjct: 446 TVLSPGFTEVMPWQSVPLEESLPTCQRGDAFPVGEVKMLEKQTNPPDYLTEAELITLMEK 505
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYR 559
HGIGTDASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA
Sbjct: 506 HGIGTDASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVE 565
Query: 560 VQ 561
Q
Sbjct: 566 KQ 567
>sp|Q9Z321|TOP3B_MOUSE DNA topoisomerase 3-beta-1 OS=Mus musculus GN=Top3b PE=2 SV=1
Length = 862
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/536 (62%), Positives = 401/536 (74%), Gaps = 5/536 (0%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVH++ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHKYTGTFAGQPVHFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N N KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGRGCDYVVLWLDCDKEGENICFEVLDAVLPVMNNAHNGEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+SL
Sbjct: 152 FSSITDTDICNAMTRLSEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L ++ + ++ + W R +FD
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKEESLLLDWDRVRVFDWEIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQIAERLYTQ
Sbjct: 272 MFLNMTKLEKEAWVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQIAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+++L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGSLRQQANHPYWADSVKQLLAEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E FT K ++ PG
Sbjct: 392 PMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPEHFTCMGKTVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD + VKM+E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSVPLEESLPTCQKGDTFTVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>sp|O96651|TOP3B_DROME DNA topoisomerase 3-beta OS=Drosophila melanogaster GN=Top3beta
PE=2 SV=2
Length = 875
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/527 (62%), Positives = 394/527 (74%), Gaps = 8/527 (1%)
Query: 34 ACSVHEWVGPLFGD-LVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATP 92
CS HEW G + V F+MTSVCGH+M LDF KYN WDKVDP++LF C TEK+E P
Sbjct: 35 GCSTHEWTGNFRNEGSVHFRMTSVCGHVMSLDFNKKYNCWDKVDPIQLFGCATEKKETNP 94
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQIN-INSPKTVWRARFSAI 151
K + FLA+EA+ C++LVLWLDCDKEGENICFEVM+AV+H IN + S + +RA FSAI
Sbjct: 95 KQNMRKFLAHEARGCDYLVLWLDCDKEGENICFEVMDAVKHVINNVYSDQVTYRAHFSAI 154
Query: 152 TDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYG 211
T+KDIK AM L PN EA+SVDARQELDLRIGCAFTR+QTKFFQ +YGDLD+SLISYG
Sbjct: 155 TEKDIKKAMETLGHPNENEAKSVDARQELDLRIGCAFTRFQTKFFQDRYGDLDSSLISYG 214
Query: 212 PCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCNVFFK 270
PCQTPTLGFCV+RHD I+TFKPE +W L L L G V++ W+RG +F K +
Sbjct: 215 PCQTPTLGFCVKRHDDIQTFKPESFWHLQL---LAGQPEVTLEWARGRVFKKDIAIMLLN 271
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVS 330
V++ K TV V S K+KPQALNTVELMR+ SSGLG+GP AMQIAERLYTQGY+S
Sbjct: 272 RVKEHKKATVESVASKEAYKSKPQALNTVELMRICSSGLGIGPFQAMQIAERLYTQGYIS 331
Query: 331 YPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKL 390
YPRTET QYP NFDL AVL + S D+G+ R +L + I PRKGKD GDHPPITP KL
Sbjct: 332 YPRTETNQYPTNFDLPAVLHVLKPSADFGEEARSILGD-IQTPRKGKDAGDHPPITPMKL 390
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGV 450
R+ D D WR+Y++I RHF+GT+ DL Y AK SV E F+ A L+ GFT V
Sbjct: 391 GNRSDFDRDTWRVYEFICRHFMGTVSRDLKYRVTTAKLSVGMETFSCTASVLIDAGFTKV 450
Query: 451 MTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
MTWSA K+E P F G + I V+++E +T PPDYLTESELI+LME+HGIGTDASIP
Sbjct: 451 MTWSAFGKDEPQPPFVQGTQVAINDVRLIESQTGPPDYLTESELITLMEEHGIGTDASIP 510
Query: 510 VHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
VHINNICQRNYV + +GR+L+PT+LGIVLVHGYQKID ELV PTMR+
Sbjct: 511 VHINNICQRNYVHIENGRKLMPTTLGIVLVHGYQKIDPELVLPTMRT 557
>sp|O70157|TOP3A_MOUSE DNA topoisomerase 3-alpha OS=Mus musculus GN=Top3a PE=1 SV=1
Length = 1003
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 218/559 (38%), Positives = 316/559 (56%), Gaps = 12/559 (2%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSNGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETHHCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCK---AVKPNLRVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHK 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IKVTHDHKDGTVEFNWKRYRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P++ +LVA++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLNLVALVEQQTVDPHW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK + L GD RLY++IVRHF+
Sbjct: 390 GAFAQTILERGGPTPRNGSKSDQAHPPIHPTKYT--SGLQGDDRRLYEFIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++ +P ++ G +V+M
Sbjct: 448 DAQGQETTVEIDIAQERFVAHGLIILARNYLDVYPYDHWSDKLLPVYEQGSHFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +TS +R +P LG+
Sbjct: 508 VDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>sp|Q13472|TOP3A_HUMAN DNA topoisomerase 3-alpha OS=Homo sapiens GN=TOP3A PE=1 SV=1
Length = 1001
Score = 382 bits (981), Expect = e-105, Method: Compositional matrix adjust.
Identities = 218/564 (38%), Positives = 315/564 (55%), Gaps = 13/564 (2%)
Query: 1 MHLR-VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMT 54
M LR V+K++ +E A + LL+ ++R G ++E+ L+G V MT
Sbjct: 28 MALRGVRKVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMT 87
Query: 55 SVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWL 114
SV GH++ DF ++ W +PL LF EK + + L E + C+ LV+W
Sbjct: 88 SVSGHLLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWT 147
Query: 115 DCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSV 174
DCD+EGENI FE++ + + V RARFS IT ++ A NL +P+ + +V
Sbjct: 148 DCDREGENIGFEIIHVCK---AVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAV 204
Query: 175 DARQELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKP 233
D RQELDLRIG AFTR+QT Q + + L LISYG CQ PTLGF VER I+ F P
Sbjct: 205 DVRQELDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVP 264
Query: 234 EPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKP 293
E + + +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +P
Sbjct: 265 EIFHRIKVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCVEDPMATVVEVRSKPKSKWRP 324
Query: 294 QALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQE 353
QAL+TVEL ++AS L + M+IAE+LYTQGY+SYPRTET +P + +L ++ QQ
Sbjct: 325 QALDTVELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQT 384
Query: 354 SSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFI 412
P WG + +L G PR G K HPPI PTK L GD RLY++IVRHF+
Sbjct: 385 PDPRWGAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYT--NNLQGDEQRLYEFIVRHFL 442
Query: 413 GTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPI 472
D + + +A E F +L + V + ++ +P ++ G
Sbjct: 443 ACCSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQP 502
Query: 473 QSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPT 532
+V+MV+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T +R +P
Sbjct: 503 STVEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPG 562
Query: 533 SLGIVLVHGYQKIDRELVEPTMRS 556
LG+ LV GY + E+ +P +R+
Sbjct: 563 HLGMGLVEGYDSMGYEMSKPDLRA 586
>sp|O61660|TOP3_CAEEL DNA topoisomerase 3 OS=Caenorhabditis elegans GN=top-3 PE=2 SV=1
Length = 759
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 196/524 (37%), Positives = 289/524 (55%), Gaps = 12/524 (2%)
Query: 44 LFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL-PAFLAN 102
LFG +TSV GH+M F +NW +ELF P + TP++KL L
Sbjct: 45 LFGQQTAISVTSVSGHMMNFQFHENMSNWQTASMVELFRAPV-RHVVTPEMKLIEQTLRE 103
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWN 162
+A+ + LV+W DCD+EGE I E+++ R + N ++RARFS IT I A N
Sbjct: 104 QAQRHDILVVWTDCDREGEAIGAEIVKVCR---DSNRRLDIFRARFSEITKAAITRAARN 160
Query: 163 LVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL-----DASLISYGPCQTPT 217
L++ + +VD R ELDLRIG AFTR QT + ++ DL + +ISYG CQ PT
Sbjct: 161 LIRLDEKTVAAVDCRSELDLRIGSAFTRLQTLHLRNRFRDLLGQNDTSQVISYGSCQFPT 220
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKH 277
LGF +R+ I F EP+W L + V W R +FD+ T ++ ++ K
Sbjct: 221 LGFVTDRYKMIENFVSEPFWKLIVEHTRESHKVEFLWDRNRLFDRDTVDILHDECKETKE 280
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V V KSK +PQAL+TVEL ++ S L M MQ+AE+LY++G++SYPRTET
Sbjct: 281 AHVEKVAKKPKSKWRPQALDTVELEKLGISKLRMSAKQTMQVAEKLYSKGFISYPRTETN 340
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQL 396
++P +L +++QQ S WGD EVL NG++ PR G+ + HPPI P K + QL
Sbjct: 341 KFPAGLNLTPLVQQQTQSNIWGDFANEVLQNGVN-PRNGRKSDEAHPPIHPLKFTEKHQL 399
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM 456
GD W++Y+ +VRHF+ + D + + +V E F + G+ V +
Sbjct: 400 QGDDWKVYELVVRHFLACVSQDAQGEETMVNLTVGTEKFHASGLRIRDMGYLKVYVYEKW 459
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
N +P + G+ +K+ + KT PD+LTE++LISLM+K+GIGTDA+ HI I
Sbjct: 460 GNRLLPTYTEGERFTDFELKIGDGKTQAPDFLTEADLISLMDKYGIGTDATHAEHIEKIK 519
Query: 517 QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRV 560
R Y+ V +L+P+ LG+ LV GY + + +P +R+ +
Sbjct: 520 TREYIGVRPDGKLIPSFLGLALVDGYDDMGFAMSKPDLRANLEI 563
>sp|Q9NG98|TOP3A_DROME DNA topoisomerase 3-alpha OS=Drosophila melanogaster GN=Top3alpha
PE=2 SV=2
Length = 1250
Score = 348 bits (892), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 195/531 (36%), Positives = 283/531 (53%), Gaps = 16/531 (3%)
Query: 37 VHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL 96
V ++ P+ G MTSV GH+M L F Y NW VDP LF P +K + +
Sbjct: 62 VFDFEAPVRGQNAKMVMTSVSGHMMQLAFQVSYKNWRTVDPRSLFDAPVKKGVGSDYEPI 121
Query: 97 PAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDI 156
L E + C+ L++W DCD+EGENI +E+++ R I +V+RA FS IT +
Sbjct: 122 KRTLEREVRGCQGLIIWTDCDREGENIGYEIIDVCRA---IKPNISVYRATFSEITTVAV 178
Query: 157 KAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQT----KFFQGKYGDLDASLISYGP 212
+ A+ L +P+ ++ +VD R ELDLR G A TR+QT + F K D LISYG
Sbjct: 179 RRALQQLGQPDKRQSDAVDVRTELDLRTGAAITRFQTMRLQRLFPEKIAD---KLISYGS 235
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCN--VFFK 270
CQ PTLGF ER+ +I F EP+W + + ++ + V W+R +FDK C +
Sbjct: 236 CQIPTLGFVAERYKEIEAFVSEPFWKIKVLHTIDDLTVEFNWARNRLFDKEACENYLLLC 295
Query: 271 AVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVS 330
E + V V K K +P L+TVE+ ++ S L + M IAE+LYT+G++S
Sbjct: 296 LAEPDPRALVESVTVKPKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTIAEKLYTKGFIS 355
Query: 331 YPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTK 389
YPRTET Q+ + F L ++ Q DWG + V+ G PR G K HPPI PTK
Sbjct: 356 YPRTETNQFSKEFALAPLVEMQTGHRDWGAFAQRVIEWG-PNPRNGNKSDQAHPPIHPTK 414
Query: 390 LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTG 449
LA L G+ R+Y+ +VRHF+ + D V ++ + +A E FT + +
Sbjct: 415 LAE--NLQGNEARVYELVVRHFLACVSKDAVGSETLVHIDIAGEKFTANGLVIHERNYLD 472
Query: 450 VMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIP 509
V + + I ++ G V + E TT P LTE++LI+LMEKHGIGTDA+
Sbjct: 473 VYVYDKWSAKQIHHYENGQRFEPTEVSLHEGATTAPPLLTEADLIALMEKHGIGTDATHA 532
Query: 510 VHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRV 560
HIN I +R Y+ V LVP +G+ L GY ++ L +P +R+ + +
Sbjct: 533 EHINTIKERGYIGVLDKGFLVPGVIGMGLYEGYDAMELALAKPQLRAEFEL 583
>sp|Q8T2T7|TOP3_DICDI DNA topoisomerase 3 OS=Dictyostelium discoideum GN=top3 PE=3 SV=1
Length = 828
Score = 338 bits (866), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 189/539 (35%), Positives = 286/539 (53%), Gaps = 41/539 (7%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
TSV GH+M +D ++ W DP++LF P K + K L L E K + L+L
Sbjct: 56 FTSVTGHLMEIDVVEQFKPWASCDPIQLFDAPIRKTVPSDKEPLKKTLEREIKKADILIL 115
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
WLDCD+EGENI FEV+E + N +RA FSAI ++I A NL KPN ++
Sbjct: 116 WLDCDREGENIAFEVLEVCK---NAKKKFEFYRAHFSAIIPREIDRACKNLAKPNEKDSI 172
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDAS-------------------------- 206
+VD R E+DLRIG AFTR+QT + + K+ + S
Sbjct: 173 AVDTRMEIDLRIGAAFTRFQTLYLK-KFKIISNSDNQPKTTTPANGNILNNSNNNSSGKE 231
Query: 207 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDL------TLNLNGVAVSVTWSRGHIF 260
+ISYGPCQ PTLGF VER+ +I FKPE +W L + T + + V+ +W R +F
Sbjct: 232 IISYGPCQFPTLGFVVERYFRIVNFKPEDFWHLSVVHEKMDTSSGKMIPVTFSWCRNRLF 291
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D + + ++ TVVDV +S +S+ +P L T+EL + AS L + MQ A
Sbjct: 292 DYTAAFILYEKCLDNTEATVVDV-TSKESRYRPVPLTTIELQKAASKKLRISSVQTMQYA 350
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNG-ISKPRKGKDV 379
E LYT+G +SYPRTET + DL ++ Q S+P+WG + +++N P+ GK+
Sbjct: 351 EELYTKGLISYPRTETDSFQAGTDLKGLIGNQASNPEWGAYASRLINNNQFVYPKSGKNN 410
Query: 380 GD-HPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
+ HPPI PT AT L G+ ++YD+I R F+ + V+ + E F+
Sbjct: 411 DNSHPPIHPTSSAT--GLSGNLKKIYDFITRRFLACCSEESVFANTTVTIDIQGERFSET 468
Query: 439 AKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
+L G+ V + ++ IP ++ G+ + + + + T P Y+TE+EL++ M+
Sbjct: 469 GTMVLKLGYLEVYPFDKRNDKLIPTYQKGERFTPKRIDLTKGTTVAPHYITEAELLTAMD 528
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
+ IGTDA++ HI I R YV + VP++LG+ LV Y+ + E +P +R+A
Sbjct: 529 NNKIGTDATMATHIQTIQDRFYVKKNESNQFVPSNLGVSLVASYELMGFEFSKPNLRAA 587
>sp|O60126|TOP3_SCHPO DNA topoisomerase 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=top3 PE=1 SV=2
Length = 622
Score = 296 bits (758), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 169/519 (32%), Positives = 268/519 (51%), Gaps = 13/519 (2%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ F S+Y++W V LF + L + EA++ ++L +
Sbjct: 55 MTSVSGHLTEASFPSEYSSWSSVPQDVLFDAQIITSVSKNAEVLADNIKKEARNAQYLYI 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I E+ R N V RA F+ + I +A + A
Sbjct: 115 WTDCDREGEHIGVEISNVARAS---NPSIQVIRADFNNLERSHIISAAKRPRDVSKNAAD 171
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+VDAR ELD R+G FTR QT Q + L +ISYGPCQ PTLGF V+R ++ F
Sbjct: 172 AVDARIELDFRLGAIFTRLQTIQLQKSFDILQNKIISYGPCQFPTLGFVVDRWQRVEDFV 231
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE YW L G + W R +FD+ T + + + K VV++ K+K K
Sbjct: 232 PETYWHLRFVDKRQGKTIQFNWERAKVFDRLTTMIILENCLECKTAKVVNITQKPKTKYK 291
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L+TVEL ++ L + +++AE LYT G+VSYPRTET Q+ + +L A++++
Sbjct: 292 PLPLSTVELTKLGPKHLRISAKKTLELAENLYTNGFVSYPRTETDQFDSSMNLHAIIQKL 351
Query: 353 ESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQL-DGDAWRLYDYIVRH 410
+ +W + +L+ PRKGK + HPPI P ++ R+ L D W++Y+ I R
Sbjct: 352 TGAQEWDSYAEGLLAGDYRPPRKGKHNDRAHPPIHPVQMVHRSALPSQDHWKVYELITRR 411
Query: 411 FIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDL 469
F+ + + + + + +E+F+ + + + V + + ++ +P+++ +
Sbjct: 412 FLACCSDNAKGAETLVQVKMEEELFSKKGLLVTEKNYLEVYPYEKWESSDQLPEYRLHEE 471
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGR-- 527
+ M++ T+ P Y+TE ELI+LM+ +GIGTDA++ HI + +R YV R
Sbjct: 472 FQPHILDMMDSSTSSPSYITEPELIALMDANGIGTDATMAEHIEKVQEREYVIKRKKRGQ 531
Query: 528 ---RLVPTSLGIVLVHGYQKIDRE--LVEPTMRSAYRVQ 561
VP+SLG+ L GY +I E L +P +R VQ
Sbjct: 532 GVTEFVPSSLGVALAKGYDEIGLEWSLTKPFLRKEMEVQ 570
>sp|P13099|TOP3_YEAST DNA topoisomerase 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=TOP3 PE=1 SV=1
Length = 656
Score = 284 bits (727), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 175/537 (32%), Positives = 268/537 (49%), Gaps = 41/537 (7%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ G+DF+ + W K ELF P + + K+ + + EA++ ++L++
Sbjct: 58 MTSVAGHLTGIDFSHDSHGWGKCAIQELFDAPLNEIMNNNQKKIASNIKREARNADYLMI 117
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I +E+ + + + V+RA FS + + I A N + ++
Sbjct: 118 WTDCDREGEYIGWEIWQEAKRGNRLIQNDQVYRAVFSHLERQHILNAARNPSRLDMKSVH 177
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDL----------------DASLISYGPCQTP 216
+V R E+DLR G FTR T+ + K + D+ ++SYG CQ P
Sbjct: 178 AVGTRIEIDLRAGVTFTRLLTETLRNKLRNQATMTKDGAKHRGGNKNDSQVVSYGTCQFP 237
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTLNL--NGVAVSVTWSRGHIFDKSTCNVFFKA-VE 273
TLGF V+R ++IR F PE +W + L + NG + W RGH+FD+ + F++ +E
Sbjct: 238 TLGFVVDRFERIRNFVPEEFWYIQLVVENKDNGGTTTFQWDRGHLFDRLSVLTFYETCIE 297
Query: 274 KEKHVT-VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYP 332
+V VVD++S +K +P L TVEL + + L + ++ AE+LY +G++SYP
Sbjct: 298 TAGNVAQVVDLKSKPTTKYRPLPLTTVELQKNCARYLRLNAKQSLDAAEKLYQKGFISYP 357
Query: 333 RTETTQYPENFDLVAVLRQQE--------SSPDWGDHVREVL-------SNGISKPRKGK 377
RTET +P DL +++ +Q W + +L +N PR G
Sbjct: 358 RTETDTFPHAMDLKSLVEKQAQLDQLAAGGRTAWASYAASLLQPENTSNNNKFKFPRSGS 417
Query: 378 -DVGDHPPITP-TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMF 435
D HPPI P L + R+Y+Y+ RHF+ D A E F
Sbjct: 418 HDDKAHPPIHPIVSLGPEANVSPVERRVYEYVARHFLACCSEDAKGQSMTLVLDWAVERF 477
Query: 436 TMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
+ +L F V W+ + + +P + L+ I +M T PP +TESELI
Sbjct: 478 SASGLVVLERNFLDVYPWARWETTKQLPRLEMNALVDIAKAEMKAGTTAPPKPMTESELI 537
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYV---TVTSGRRLVPTSLGIVLVHGYQKIDRE 548
LM+ +GIGTDA+I HI+ I RNYV V L PT+LG+ LVHG++ I E
Sbjct: 538 LLMDTNGIGTDATIAEHIDKIQVRNYVRSEKVGKETYLQPTTLGVSLVHGFEAIGLE 594
>sp|Q9HM08|TOP1_THEAC DNA topoisomerase 1 OS=Thermoplasma acidophilum (strain ATCC 25905
/ DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=topA
PE=3 SV=1
Length = 770
Score = 221 bits (564), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 152/505 (30%), Positives = 253/505 (50%), Gaps = 26/505 (5%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEK--REATPKLKLPAFLANEAKDCEFL 110
+ + GHI+ DF S Y++W+K+D +L K + L AF E +
Sbjct: 49 LIPLSGHIVEADFESGYSDWNKIDLSDLIDARIVKNIKNKVAYQTLQAFRGK----VEEI 104
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
V+ D D+EGE I E ++ ++ + + RA+FSA+T +I + NL+ N
Sbjct: 105 VIATDYDREGELIGVEALDIIKE-----GKEEIRRAKFSALTKNEILDSFKNLIGVNYSL 159
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
A + DAR+ +DL G TR FF G L S +S G QTPTL V+R +I++
Sbjct: 160 ADAADARESIDLIWGSVLTR----FFSVTTGRLGKSFLSAGRVQTPTLAIVVDREREIQS 215
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSK 290
F+PE YW + +T + +G + +I D+ T ++A+ K K+ V S
Sbjct: 216 FRPERYWTISITFDKDG-QFKARYPE-NIKDQDTAEKIYEAI-KGKNGRVSSYTSKEDHI 272
Query: 291 TKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLR 350
+P +T E +R AS +G+ P AM IAE LY +G +SYPRT+ T YP + +L +VL+
Sbjct: 273 RRPAPFSTTEFLREASR-IGIMPTKAMSIAENLYMRGLISYPRTDNTVYPRSINLKSVLK 331
Query: 351 QQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVR 409
+ E++ + +V+E+ + P +G+ + DHPPI P + + QL GD R+YD I+R
Sbjct: 332 KLENTA-YSKYVKEIETFDRILPSRGRIETTDHPPIYPVD-SPKEQLKGDYGRVYDLILR 389
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDL 469
HF+ TL D T A+ V F ++ G+T + + K+ +P+ G+
Sbjct: 390 HFLSTLYRDGKKTVAEAEIYVNGYTFKAAGQHTTDRGWTEIYGYDP-KDVYLPELTEGED 448
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRL 529
+ + +T PP S L+ ME+ +GT ++ I + +R ++ G +
Sbjct: 449 LKAIDWNIQREETKPPPRYDMSSLLKKMEELNLGTKSTRHDIIGKLIERGFI---EGNPV 505
Query: 530 VPTSLGIVLVHGYQKIDRELVEPTM 554
PT LG+ + + ++ + +P M
Sbjct: 506 KPTPLGMAFIDAVRSVNSHIADPEM 530
>sp|O28469|TOP1_ARCFU DNA topoisomerase 1 OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=topA PE=3
SV=1
Length = 663
Score = 217 bits (552), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 147/465 (31%), Positives = 224/465 (48%), Gaps = 21/465 (4%)
Query: 58 GHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCD 117
GHI+ LDF + NNW K PLE E + + + + L AK + + + D D
Sbjct: 51 GHIVELDFPKELNNWTKT-PLEKL-LQAELVKKVKERTISSILKEIAKKADRVTVATDYD 108
Query: 118 KEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDAR 177
+EGE I E +E V+ ++N V R R+SA+T+K+I++A VK + A + AR
Sbjct: 109 REGELIGVEALEIVK---SVNPTVKVDRVRYSAVTEKEIRSAFSKPVKVDFNLANAALAR 165
Query: 178 QELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYW 237
Q++DL G TR G + +S G QTPTL V+R +I+ FKPE Y+
Sbjct: 166 QKIDLIWGATLTR----LISVHSGRMGKDFLSVGRVQTPTLRLIVDRELEIQNFKPEKYY 221
Query: 238 LLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALN 297
++ G G + +F K E K V + + +P N
Sbjct: 222 --EIFAEFEGFIAKHPKRYGS--KEEAEKLFAKIGETAK---VEEFTRRRMEENRPTPFN 274
Query: 298 TVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPD 357
T E +R AS M PH AM IAE LY GY+SYPRT+ T YP +L+ ++ S
Sbjct: 275 TTEFLREASKF--MSPHKAMNIAETLYMNGYISYPRTDNTVYPPTINLIEIVSALSSV-- 330
Query: 358 WGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLC 416
+ + VLS P +G+ + DHPPI PT +A R +L D W +Y+ +VR F+ TL
Sbjct: 331 FPREAQIVLSQDKITPSRGRRETKDHPPIYPTGVAKRGELSKDEWTIYELVVRRFLATLA 390
Query: 417 GDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVK 476
V+ + F + L+ G+ + +S + +P K GD++ I +
Sbjct: 391 PKAVWDVRRVVLDSNGVKFVANGRQLVEAGWRDIYIYSKAEETELPLLKKGDVLRILKKR 450
Query: 477 MVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV 521
+ E++T PP + S LI +MEK +GT ++ I + R Y+
Sbjct: 451 LEEKETKPPGRYSASSLIKMMEKLNLGTKSTRHEIIQKLVSRRYI 495
>sp|O27661|TOP1_METTH DNA topoisomerase 1 OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=topA PE=3 SV=1
Length = 718
Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 126/423 (29%), Positives = 198/423 (46%), Gaps = 18/423 (4%)
Query: 115 DCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSV 174
D D EG I F A+++ + + R +FS +T ++I+ A N ++ + + S
Sbjct: 113 DYDIEGTLIGFN---ALKYGCGEEALRKTSRMKFSTLTREEIQRAYKNPIEVDYGQVDSG 169
Query: 175 DARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPE 234
AR LD G +R K + +S G QTPTL VER +IR FKP
Sbjct: 170 AARHILDFIFGVNISRSLMKSVKAATNRFIK--LSAGRVQTPTLAILVEREKEIRDFKPV 227
Query: 235 PYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCN-VFFKAVEKEKHVTVVDVQSSTKSKTKP 293
PYW++ L +A S RG IF + + + K + V V V+ + + P
Sbjct: 228 PYWIIRAELGEGIIAES---KRGKIFKRELVDSILEKCQGSDAEVKDVRVRDTIRKPPVP 284
Query: 294 QALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQE 353
L T L A G P IA+ LYT+GY SYPRT + + PE+ +L+
Sbjct: 285 FDLGT--LQSEAYRVFGFSPKKTQTIAQNLYTEGYTSYPRTSSQKLPESIGYEKILKNLA 342
Query: 354 SSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVRHFI 412
+P +G H+ + G KP +GK D HP I PT L ++L D ++YD IV FI
Sbjct: 343 KNPRFGVHIERL--RGPLKPHEGKKEDDAHPAIHPTGLLP-SELSKDEKKVYDLIVHRFI 399
Query: 413 GTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPI 472
D + + + +E F+ K + G+ ++ M++E P+ GD + +
Sbjct: 400 SVFGEDAILQTMKVELEIGEEEFSFSRKRVSKAGWMESYPYTKMEDEEFPEISGGDSLAV 459
Query: 473 QSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPT 532
+SV ER+T PP E+ LI +E+ G+GT ++ I + R Y+ G+++ +
Sbjct: 460 RSVSADERETKPPARYNEASLIRELERRGLGTKSTRADIIAKLYDRKYI---EGKKIRVS 516
Query: 533 SLG 535
LG
Sbjct: 517 PLG 519
>sp|Q9UYS8|TOP1_PYRAB DNA topoisomerase 1 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=topA PE=3 SV=1
Length = 685
Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 144/523 (27%), Positives = 246/523 (47%), Gaps = 38/523 (7%)
Query: 44 LFGDLVLFKMTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAF 99
+F D + S GH+ GL DF Y +D ++ + ++ K A +K +
Sbjct: 37 VFRDGKKLIVASAVGHLYGLAPKQDFFG-YPIFD-IEWVPVYIAEKNKDYAKDYIKALSV 94
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
LA K EF+V D D EGE I + A+++ ++ P R +FSA+T +D+ A
Sbjct: 95 LAKRVK--EFIVA-CDYDTEGEVIGYT---ALKYACGVD-PSRAKRMKFSALTKRDLLNA 147
Query: 160 MWNLVKP--NIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPT 217
W ++P N A + AR LD G +R T + G ++S G Q PT
Sbjct: 148 -WRNLEPTINFGMANAGIARHVLDWYWGVNLSRALTHAIKRASGKW--VVLSTGRVQGPT 204
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEK- 276
L F VER +I++F P+PYW++ L + NG + + + I+ + V+K K
Sbjct: 205 LKFLVEREREIQSFVPKPYWVIKLVIEKNGQKLVANYEKDKIWSEEEAKKIVTEVKKSKA 264
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTET 336
V+ ++V+ ++ P L T L R A S G P + IA+ LY +G+ SYPRTE+
Sbjct: 265 RVSNIEVKRQKRNPPVPFDLGT--LQREAYSAFGFSPKKTLDIAQSLYEKGFTSYPRTES 322
Query: 337 TQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPT-KLATRT 394
+ P+N + +++ P + + +L KP +G K+ HP I PT ++
Sbjct: 323 QKLPKNLNFRLIIQNISRMPQYRPYAHLLLGMPELKPVEGKKEDPAHPAIYPTGEIPGPG 382
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
L D +LYD IVR F+ ++ + + SV + K++L T W
Sbjct: 383 DLSKDEEKLYDMIVRRFLA------LFMEPAVRESVKVTILAGPHKFMLSGARTVKQGWL 436
Query: 455 AMKNE-------SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDAS 507
++ + ++P+F G+ + + V+ ++KT PP + + +I ME GIGT A+
Sbjct: 437 SVYGKYIKFDEVTLPEFFIGERVRVLQVRREKKKTKPPARYSPAAVIKKMEDLGIGTKAT 496
Query: 508 IPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELV 550
+ + QR Y+ ++ P LG+ ++ +K E++
Sbjct: 497 RAQILETLYQRGYIEGKKSIKVTP--LGMKVIETLEKYVPEII 537
>sp|O58356|TOP1_PYRHO DNA topoisomerase 1 OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=topA PE=3
SV=1
Length = 686
Score = 166 bits (419), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 141/512 (27%), Positives = 236/512 (46%), Gaps = 34/512 (6%)
Query: 53 MTSVCGHIMGLDFTSK---YNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEF 109
+ S GH+ GL Y +D ++ + ++ K A +K + LA + EF
Sbjct: 46 VASAVGHLYGLAPKRDVFGYPIFD-IEWVPVYIAEKGKEYAREYIKALSVLAKRVR--EF 102
Query: 110 LVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKP--N 167
+V D D EGE I + A+++ ++ P+ R +FSA+T +D+ A W ++P N
Sbjct: 103 IVA-CDYDTEGEVIGYT---ALKYACGVD-PRVAKRMKFSALTKRDLLNA-WRNLEPTIN 156
Query: 168 IFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDK 227
A + AR LD G +R T + G ++S G Q PTL F VER +
Sbjct: 157 FGMANAGIARHILDWYWGVNLSRALTHAIKKASGKW--VVLSTGRVQGPTLKFLVERERE 214
Query: 228 IRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSST 287
I++F P PYW++ L NG + + + I+++ V+K V +V+
Sbjct: 215 IQSFVPRPYWVIKLIFEKNGQKFTANYEKDKIWEEEEGKRIVLEVKKSIP-RVSNVEIKR 273
Query: 288 KSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVA 347
+ +T P + L R A S G P + IA+ LY +G+ SYPRTE+ + P N +
Sbjct: 274 QKRTPPHPFDLGTLQREAYSAFGFSPKKTLDIAQSLYEKGFSSYPRTESQKLPRNINFRM 333
Query: 348 VLRQQESSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATR-TQLDGDAWRLYD 405
+++ P + + +L KP +G K+ HP I PT R L D +LYD
Sbjct: 334 IIQNLAKMPQYRPYAHILLGLPELKPVEGKKEDPAHPAIYPTGEIPRPGDLTKDEEKLYD 393
Query: 406 YIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE------ 459
IVR F+ V+ + + SV + K+ L G T W ++ +
Sbjct: 394 MIVRRFLA------VFMEPAIRESVKVTIRAGPHKFFLSGGRTVKKGWLSVYGKYVKFEE 447
Query: 460 -SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQR 518
++P+F G+ I + VK ++KT PP + + +I ME G+GT A+ + + QR
Sbjct: 448 VTLPEFFIGERIKVIQVKREKKKTKPPARYSPAAVIKKMEDLGLGTKATRAQILETLYQR 507
Query: 519 NYVTVTSGRRLVPTSLGIVLVHGYQKIDRELV 550
Y+ ++ P LG+ ++ +K E++
Sbjct: 508 GYIEGKKSIKVTP--LGMKVIETLEKYVPEII 537
>sp|Q65N90|TOP3_BACLD DNA topoisomerase 3 OS=Bacillus licheniformis (strain DSM 13 / ATCC
14580) GN=topB PE=3 SV=2
Length = 727
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 114/418 (27%), Positives = 187/418 (44%), Gaps = 48/418 (11%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD + +V+ D +EGE + ++E + + P K +W S++TDK IK NL
Sbjct: 95 KDVKDIVIATDAGREGELVARWIIEKAK----VTKPLKRLW---ISSVTDKAIKDGFKNL 147
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
FE S AR E D +G TR T F + +S G QTPTL
Sbjct: 148 KNGKDFENLYHSAVARAEADWIVGINATRALTTKFNAQ--------LSCGRVQTPTLAMI 199
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW-----SRGHIFDKSTCNVFFKAVEKEK 276
+R + I+ FKP PY+ L ++ +++TW S+ F+ S + A++ K
Sbjct: 200 AKREEDIKNFKPVPYFGLRAAVD----GMTLTWQDKKTSQTRTFNASVTSQLAGALQG-K 254
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTE 335
+VD++ + K P + EL R A G + + ++LY Q V+YPRT+
Sbjct: 255 PAVIVDLKKTAKKSFAPGLYDLTELQRDAHKRFGFSAKETLSVLQKLYEQHKLVTYPRTD 314
Query: 336 TTQYPENFDLVAVLRQQ----ESSPDWGDHVREVLSNGISKPR---KGKDVGDHPPITPT 388
+++ N D+V L+ + + P + HV +L G+ + V DH I PT
Sbjct: 315 -SRFLSN-DIVPTLKDRLEGMQVKP-YAQHVARILKRGVKANKSFVNDAKVSDHHAIIPT 371
Query: 389 K--LATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
+ LA L +LYD I + F+ L Y + + E FT + K + G
Sbjct: 372 EEPLALGA-LSEKERKLYDLIAKRFLAVLMPPFEYEETKVFAEIGGETFTAKGKTVQSQG 430
Query: 447 FTGVMTWS------AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
+ V ++ K++++P GD + ++S+ + +T PP E L+S ME
Sbjct: 431 WKAVYDFADEDDDEEEKDQTLPKLAKGDTLSVRSLTETKGETKPPARFNEGTLLSAME 488
>sp|Q59046|TOP1_METJA DNA topoisomerase 1 OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=topA PE=3 SV=1
Length = 761
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 112/460 (24%), Positives = 199/460 (43%), Gaps = 24/460 (5%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L +KD + + D D EGE I + A+++ K R RFS++T K+I A
Sbjct: 96 LKKLSKDADEFYIATDWDIEGELIGYH---ALKYCCGREKAK---RMRFSSLTKKEIVRA 149
Query: 160 MWNLVKPNIFEARSVDA---RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTP 216
N P+ + VDA R LD G +R + +S G Q P
Sbjct: 150 FEN---PDEIDYGLVDAGESRHILDWYFGINLSRALMNAIRAVN---RWKTMSVGRVQGP 203
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEK 276
L F ER +I+ F P+PYW+++ L N A+ + +++ ++ ++ EK
Sbjct: 204 ALAFLTERELEIKKFIPKPYWVIEALLKDNLKAIH---EKEKFWNEKEAKNVYEKIKDEK 260
Query: 277 HVTVVDVQSSTKSKTKP-QALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
VV+++ TK K KP + L R A S + P +IA++LY +SYPRT
Sbjct: 261 SAKVVEIKK-TKRKLKPLPPFDLGTLQREAYSYFKISPKETQEIAQKLYENALISYPRTS 319
Query: 336 TTQYPENFD-LVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRT 394
+ + P++ L +L ++ P +G +L + K+ HP I +
Sbjct: 320 SQKLPKDRKYLEDILNIIKNHPVYGKWAERILKENLKPVEGKKEDPAHPAIHIVDIPKEE 379
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
+ + +YD I R + + K + E F + + G+ + +
Sbjct: 380 LSEKEK-EIYDLIARRTLAAFWDNAEREYLNVKIDIKGEKFKLSGSRTVKEGWHEIYYFP 438
Query: 455 AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINN 514
+P K D+I ++ + + ++T PP T + +I +EK G+GT A+ I+
Sbjct: 439 KFDEIELPPLKKNDIIKVEKITITRKETQPPKRYTVASIIKELEKRGLGTKATRAEIIDK 498
Query: 515 ICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
+ +R YV ++ T LGI ++ ++ E+++ M
Sbjct: 499 LIKRGYVIDDGSLKV--TDLGISVIETLKRFCPEIIDEKM 536
>sp|Q9HZJ5|TOP1_PSEAE DNA topoisomerase 1 OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=topA PE=3 SV=1
Length = 868
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 124/448 (27%), Positives = 195/448 (43%), Gaps = 32/448 (7%)
Query: 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL 163
AKD + + L D D+EGE I + + EA+ R F+ IT K I+ A
Sbjct: 105 AKDADTVYLATDLDREGEAIAWHLREAIG-----GDESRYKRVVFNEITKKAIQEAFSQP 159
Query: 164 VKPNIFEARSVDARQELDLRIGCAFTRYQ-TKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
+ +I + AR+ LD +G + K +G +S G Q+ + V
Sbjct: 160 GELDINRVNAQQARRFLDRVVGYMVSPLLWQKIARG---------LSAGRVQSVAVKLVV 210
Query: 223 ERHDKIRTFKPEPYWLL--DL-TLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEK-HV 278
ER +IR F PE YW + DL T V VT +G F A+EK K
Sbjct: 211 EREREIRAFVPEEYWEVHADLGTAKGANVRFEVTREKGEAFKPLNEAQAMAALEKLKASA 270
Query: 279 TVVDVQSSTKSKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V + + ++P A T L + AS+ LG G M +A+RLY GY++Y RT++T
Sbjct: 271 YSVAKREDRPTSSRPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDST 330
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR-TQL 396
+ D + ++R ++G +N S ++ H I P+ + + TQL
Sbjct: 331 NL--SADAIGMVRGFIED-EFGQKYLPGKANVYSSKEGAQEA--HEAIRPSDVNLKPTQL 385
Query: 397 DG---DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTW 453
G DA RLYD I R F+ Y + D + + L G+T V+
Sbjct: 386 SGMERDAERLYDLIWRQFVACQMTPAEYLSTSVSVTAGDFELRAKGRILKFDGYTRVLPQ 445
Query: 454 SAMKNES--IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVH 511
+ E +P+ K G+ + + + + T PP +E+ L+ +EK GIG ++
Sbjct: 446 QSKPGEDDVLPEMKEGENLKLIKLDPSQHFTKPPARYSEASLVKELEKRGIGRPSTYAAI 505
Query: 512 INNICQRNYVTVTSGRRLVPTSLGIVLV 539
I+ I +R YVT T RR +G ++
Sbjct: 506 ISTIQERGYVT-THNRRFYAEKMGDIVT 532
>sp|Q9CN30|TOP1_PASMU DNA topoisomerase 1 OS=Pasteurella multocida (strain Pm70) GN=topA
PE=3 SV=1
Length = 868
Score = 122 bits (306), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 117/458 (25%), Positives = 196/458 (42%), Gaps = 30/458 (6%)
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT 152
K K+ A L + AK + + L D D+EGE I + + E + R F+ IT
Sbjct: 95 KEKVVAELKSLAKKADHIYLATDLDREGEAIAWHLREVIG-----GDDARFSRVVFNEIT 149
Query: 153 DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGP 212
I+ A + N+ + R+ LD +G + K A +S G
Sbjct: 150 KNAIQQAFEKPEQLNLDRVNAQQTRRFLDRVVGFMVSPLLWKKV--------ARGLSAGR 201
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDL---TLNLNGVAVSVTWSRGHIFDKSTCNVFF 269
Q+ + VER +I+ F+PE YW +D+ T + ++VT +G F+
Sbjct: 202 VQSVAVKLVVEREREIKAFQPEEYWEIDVLTQTQAKQALRLAVTQFKGKKFEPKNATQAQ 261
Query: 270 KAVEKEKHV--TVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQG 327
AV+ +H V D+++ T L + AS+ LG G M +A+RLY G
Sbjct: 262 SAVDFLQHADYVVSDLETKPTHSRAKAPFITSTLQQTASTRLGFGVKKTMMLAQRLYEAG 321
Query: 328 YVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITP 387
Y++Y RT++T + D + ++R S +G+ + S + K H I P
Sbjct: 322 YITYMRTDSTNLSQ--DALKMVRGYIQS-HYGESY--LPSKPVFYSSKENAQEAHEAIRP 376
Query: 388 TKLAT----RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLL 443
+ + T T +D DA RLYD I R F+ Y + + + L
Sbjct: 377 SDVNTLAEQLTGMDKDAVRLYDLIWRQFVACQMPAAQYDSTTVTVRAGEYELKAKGRILR 436
Query: 444 HPGFTGVMTWSAMKNES--IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHG 501
G+T V+ + E +PD + + + ++ V + T PP +E+ L+ +EK G
Sbjct: 437 FDGWTKVLPTMSKNAEDQVLPDVQLNEKLHLEHVLPEQLFTKPPARFSEAALVKELEKRG 496
Query: 502 IGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
IG ++ I+ I +R YV V + RR +G ++
Sbjct: 497 IGRPSTYAAIISTIQERGYVRVEN-RRFYAEKMGEIVT 533
>sp|Q63GK5|TOP3_BACCZ DNA topoisomerase 3 OS=Bacillus cereus (strain ZK / E33L) GN=topB
PE=3 SV=1
Length = 729
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 110/419 (26%), Positives = 181/419 (43%), Gaps = 48/419 (11%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD +++ D +EGE + +++ VR IN P K +W S++TDK IK NL
Sbjct: 95 KDVNEIIVATDAGREGELVARWIIDKVR----INKPIKRLW---ISSVTDKAIKDGFANL 147
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
++ S AR E D IG TR T F + ++ G QTPT+
Sbjct: 148 KPGKAYDNLYASAVARSEADWYIGLNATRALTTRFNAQ--------LNCGRVQTPTVAMI 199
Query: 222 VERHDKIRTFKPEPYWLLDL-TLNLNGVAVSVTWSRGH----IFDKSTCNVFFKAVEKEK 276
R D+I+ FK + Y+ ++ T N + +TW + F+K + K ++K
Sbjct: 200 ANREDEIKNFKAQTYYGIEAQTTN----QLKLTWQDANGNSRSFNKEKIDGIVKGLDKH- 254
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTE 335
+ TV+++ K P + EL R A+ G + I ++LY Q V +YPRT+
Sbjct: 255 NATVLEIDKKQKKSFSPGLYDLTELQRDANKKFGYSAKETLNIMQKLYEQHKVLTYPRTD 314
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKD-------VGDHPPITPT 388
+ D+V L ++ + G++ R + + KP K V DH I PT
Sbjct: 315 SRYISS--DIVGTLPERLKACGVGEY-RPLAHKVLQKPIKANKSFVDDSKVSDHHAIIPT 371
Query: 389 KLATRTQLDGDAWR-LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
+ D R +YD +V+ F+ L Y Q + + +E F K +LH G+
Sbjct: 372 EGYVNFSAFTDKERKIYDLVVKRFLAVLFPAFEYEQLTLRTKIGNETFIARGKTILHAGW 431
Query: 448 TGVM--------TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
V +K + +P + GD + ++ + +T P E+ L+S ME
Sbjct: 432 KEVYENRFEDDDVTDEVKEQLLPRIEKGDTLTVKLIMQTSGQTKAPARFNEATLLSAME 490
>sp|Q6HP19|TOP3_BACHK DNA topoisomerase 3 OS=Bacillus thuringiensis subsp. konkukian
(strain 97-27) GN=topB PE=3 SV=1
Length = 729
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/419 (26%), Positives = 181/419 (43%), Gaps = 48/419 (11%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD +++ D +EGE + +++ VR IN P K +W S++TDK IK NL
Sbjct: 95 KDVNEIIVATDAGREGELVARWIIDKVR----INKPIKRLW---ISSVTDKAIKDGFANL 147
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
++ S AR E D IG TR T F + ++ G QTPT+
Sbjct: 148 KPGKAYDNLYASAVARSEADWYIGLNATRALTTRFNAQ--------LNCGRVQTPTVAMI 199
Query: 222 VERHDKIRTFKPEPYWLLDL-TLNLNGVAVSVTWSRGH----IFDKSTCNVFFKAVEKEK 276
R D+I+ FK + Y+ ++ T N + +TW + F+K + K ++K
Sbjct: 200 ANREDEIKNFKAQTYYGIEAQTTN----QLKLTWQDANGNSRSFNKEKIDGIVKGLDKH- 254
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTE 335
+ TV+++ K P + EL R A+ G + I ++LY Q V +YPRT+
Sbjct: 255 NATVLEIDKKQKKSFSPGLYDLTELQRDANKKFGYSAKETLNIMQKLYEQHKVLTYPRTD 314
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKD-------VGDHPPITPT 388
+ D+V L ++ + G++ R + + KP K V DH I PT
Sbjct: 315 SRYISS--DIVGTLPERLKACGVGEY-RPLAHKVLQKPIKANKSFVDDSKVSDHHAIIPT 371
Query: 389 KLATRTQLDGDAWR-LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
+ D R +YD +V+ F+ L Y Q + V +E F K +LH G+
Sbjct: 372 EGYVNFSAFTDKERKIYDLVVKRFLAVLFPAFEYEQLTLRTKVGNETFIARGKTILHAGW 431
Query: 448 TGVM--------TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
V +K + +P + GD + ++ + +T P E+ L+S ME
Sbjct: 432 KEVYENRFEDDDVTDDVKEQLLPRIEKGDTLTVKLIMQTSGQTKAPARFNEATLLSAME 490
>sp|Q81Z97|TOP3_BACAN DNA topoisomerase 3 OS=Bacillus anthracis GN=topB PE=3 SV=1
Length = 729
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/419 (26%), Positives = 181/419 (43%), Gaps = 48/419 (11%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD +++ D +EGE + +++ VR IN P K +W S++TDK IK NL
Sbjct: 95 KDVNEIIVATDAGREGELVARWIIDKVR----INKPIKRLW---ISSVTDKAIKDGFANL 147
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
++ S AR E D IG TR T F + ++ G QTPT+
Sbjct: 148 KPGKAYDNLYASAVARSEADWYIGLNATRALTTRFNAQ--------LNCGRVQTPTVAMI 199
Query: 222 VERHDKIRTFKPEPYWLLDL-TLNLNGVAVSVTWSRGH----IFDKSTCNVFFKAVEKEK 276
R D+I+ FK + Y+ ++ T N + +TW + F+K + K ++K
Sbjct: 200 ANREDEIKNFKAQTYYGIEAQTTN----QLKLTWQDANGNSRSFNKEKIDGIVKGLDKH- 254
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTE 335
+ TV+++ K P + EL R A+ G + I ++LY Q V +YPRT+
Sbjct: 255 NATVLEIDKKQKKSFSPGLYDLTELQRDANKKFGYSAKETLNIMQKLYEQHKVLTYPRTD 314
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKD-------VGDHPPITPT 388
+ D+V L ++ + G++ R + + KP K V DH I PT
Sbjct: 315 SRYISS--DIVGTLPERLKACGVGEY-RPLAHKVLQKPIKANKSFVDDSKVSDHHAIIPT 371
Query: 389 KLATRTQLDGDAWR-LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
+ D R +YD +V+ F+ L Y Q + V +E F K +LH G+
Sbjct: 372 EGYVNFSAFTDKERKIYDLVVKRFLAVLFPAFEYEQLTLRTKVGNETFIARGKTILHAGW 431
Query: 448 TGVM--------TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
V +K + +P + GD + ++ + +T P E+ L+S ME
Sbjct: 432 KEVYENRFEDDDVTDDVKEQLLPRIEKGDTLTVKLIMQTSGQTKAPARFNEATLLSAME 490
>sp|A0R979|TOP3_BACAH DNA topoisomerase 3 OS=Bacillus thuringiensis (strain Al Hakam)
GN=topB PE=3 SV=1
Length = 729
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/419 (26%), Positives = 181/419 (43%), Gaps = 48/419 (11%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD +++ D +EGE + +++ VR IN P K +W S++TDK IK NL
Sbjct: 95 KDVNEIIVATDAGREGELVARWIIDKVR----INKPIKRLW---ISSVTDKAIKDGFANL 147
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
++ S AR E D IG TR T F + ++ G QTPT+
Sbjct: 148 KPGKAYDNLYASAVARSEADWYIGLNATRALTTRFNAQ--------LNCGRVQTPTVAMI 199
Query: 222 VERHDKIRTFKPEPYWLLDL-TLNLNGVAVSVTWSRGH----IFDKSTCNVFFKAVEKEK 276
R D+I+ FK + Y+ ++ T N + +TW + F+K + K ++K
Sbjct: 200 ANREDEIKNFKAQTYYGIEAQTTN----QLKLTWQDANGNSRSFNKEKIDGIVKGLDKH- 254
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTE 335
+ TV+++ K P + EL R A+ G + I ++LY Q V +YPRT+
Sbjct: 255 NATVLEIDKKQKKSFSPGLYDLTELQRDANKKFGYSAKETLNIMQKLYEQHKVLTYPRTD 314
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKD-------VGDHPPITPT 388
+ D+V L ++ + G++ R + + KP K V DH I PT
Sbjct: 315 SRYISS--DIVGTLPERLKACGVGEY-RPLAHKVLQKPIKANKSFVDDSKVSDHHAIIPT 371
Query: 389 KLATRTQLDGDAWR-LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
+ D R +YD +V+ F+ L Y Q + V +E F K +LH G+
Sbjct: 372 EGYVNFSAFTDKERKIYDLVVKRFLAVLFPAFEYEQLTLRTKVGNETFIARGKTILHAGW 431
Query: 448 TGVM--------TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
V +K + +P + GD + ++ + +T P E+ L+S ME
Sbjct: 432 KEVYENRFEDDDVTDDVKEQLLPRIEKGDTLTVKLIMQTSGQTKAPARFNEATLLSAME 490
>sp|Q73E74|TOP3_BACC1 DNA topoisomerase 3 OS=Bacillus cereus (strain ATCC 10987) GN=topB
PE=3 SV=1
Length = 729
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 114/422 (27%), Positives = 184/422 (43%), Gaps = 54/422 (12%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD +++ D +EGE + +++ VR IN P K +W S++TDK IK NL
Sbjct: 95 KDVNEIIVATDAGREGELVARWIIDKVR----INKPIKRLW---ISSVTDKAIKDGFANL 147
Query: 164 VKP-----NIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTL 218
KP N++ S AR E D IG TR T F + ++ G QTPT+
Sbjct: 148 -KPGRAYDNLYA--SAVARSEADWYIGLNATRALTTRFNAQ--------LNCGRVQTPTV 196
Query: 219 GFCVERHDKIRTFKPEPYWLLDL-TLNLNGVAVSVTWSRGH----IFDKSTCNVFFKAVE 273
R D+I+ FK + Y+ ++ T N + +TW + F+K + K ++
Sbjct: 197 AMIANREDEIKNFKAQTYYGIEAQTTN----QLKLTWQDANGNSRSFNKEKIDGIVKGLD 252
Query: 274 KEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYP 332
K + TV+++ K P + EL R A+ G + I ++LY Q V +YP
Sbjct: 253 KH-NATVMEIDKKQKKSFSPGLYDLTELQRDANKKFGYSAKETLNIMQKLYEQHKVLTYP 311
Query: 333 RTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKD-------VGDHPPI 385
RT++ D+V L ++ + G++ R + + KP K V DH I
Sbjct: 312 RTDSRYISS--DIVGTLPERLKACGVGEY-RPLAHKVLQKPIKANKSFVDDSKVSDHHAI 368
Query: 386 TPTKLATRTQLDGDAWR-LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLH 444
PT+ D R +YD +V+ F+ L Y Q + V +E F K +LH
Sbjct: 369 IPTEGYVNFSAFTDKERKIYDLVVKRFLAVLFPAFEYEQLTLRTKVGNETFIARGKTILH 428
Query: 445 PGFTGVM--------TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISL 496
G+ V +K + +P + GD + ++ + +T P E+ L+S
Sbjct: 429 AGWKEVYENRFEDDDVTDDVKEQLLPRIEKGDTLTVKLIMQTSGQTKAPARFNEATLLSA 488
Query: 497 ME 498
ME
Sbjct: 489 ME 490
>sp|Q81IH1|TOP3_BACCR DNA topoisomerase 3 OS=Bacillus cereus (strain ATCC 14579 / DSM 31)
GN=topB PE=3 SV=1
Length = 729
Score = 119 bits (299), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 110/418 (26%), Positives = 181/418 (43%), Gaps = 46/418 (11%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD +++ D +EGE + +++ V+ +N P K +W S++TDK IK NL
Sbjct: 95 KDVNEIIVATDAGREGELVARWIIDKVK----LNKPIKRLW---ISSVTDKAIKDGFANL 147
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
++ S AR E D IG TR T F + ++ G QTPT+
Sbjct: 148 KPGKAYDNLYASAVARSEADWYIGLNATRALTTRFNAQ--------LNCGRVQTPTVAMI 199
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGH----IFDKSTCNVFFKAVEKEKH 277
R D+I+ FK + Y+ ++ + +TW + F+K + K ++K+ +
Sbjct: 200 ASREDEIKNFKAQTYYGIEAQ---TMEKLKLTWQDANGNSRSFNKEKIDGIVKRLDKQ-N 255
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTET 336
TVV++ K P + EL R A+ G + I ++LY Q V +YPRT++
Sbjct: 256 ATVVEIDKKQKKSFSPGLYDLTELQRDANKKFGYSAKETLNIMQKLYEQHKVLTYPRTDS 315
Query: 337 TQYPENFDLVAVLRQQESSPDWGDH---VREVLSNGISKPRKG----KDVGDHPPITPTK 389
D+V L ++ + G++ +VL I KP K V DH I PT+
Sbjct: 316 RYISS--DIVGTLPERLKACGVGEYRPFAHKVLQKPI-KPNKSFVDDSKVSDHHAIIPTE 372
Query: 390 LATRTQLDGDAWR-LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
D R +YD +V+ F+ L Y Q + V +E F K +LH G+
Sbjct: 373 GYVNFSAFTDKERKIYDLVVKRFLAVLFPAFEYEQLTLRTKVGNETFIARGKTILHAGWK 432
Query: 449 GVM--------TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
V +K + +P + GD + ++ + +T P E+ L+S ME
Sbjct: 433 EVYENRFEDDDVTDDVKEQLLPHIEKGDTLAVKLIMQTSGQTKAPARFNEATLLSAME 490
>sp|O66893|TOP1_AQUAE DNA topoisomerase 1 OS=Aquifex aeolicus (strain VF5) GN=topA PE=3
SV=1
Length = 540
Score = 119 bits (297), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 117/459 (25%), Positives = 201/459 (43%), Gaps = 38/459 (8%)
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT 152
K KL L ++ + L D D+EGE I + + + + ++N K + RA F IT
Sbjct: 57 KKKLVEQLKKLSRRSSIVYLGTDPDREGEAIAYFLKKDL-EKVN----KNIKRAVFYEIT 111
Query: 153 DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGP 212
+ I+ ++ N N+ + AR+ LD IG + K F+ +S G
Sbjct: 112 PEAIRESIRNAGDVNMNLVYAQFARRILDRLIGYLISPILWKEFKN-------YKLSAGR 164
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAV 272
Q+P L VER +I+ FK + Y+ + L + + + S + K +
Sbjct: 165 VQSPALRLIVEREREIQNFKVKKYYYVKALLRKGSEEFWAIYDYRYE-NPSDAKIIAKKL 223
Query: 273 EKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYP 332
EK + +V V+ + + P+ T +L A++ G ++A+ LY +GY++YP
Sbjct: 224 EK-GYFSVYKVEKKKEKVSPPKPFITSDLQSEANAKFGFSSERTQKLAQELYEKGYITYP 282
Query: 333 RTETTQYPENF--DLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKL 390
RT++ + E + + + +++ ++ +R ++ G H I PT L
Sbjct: 283 RTDSYRMNEKKAKEFMNYI-EKKYGKEYVGRLRRFREKATAQ-------GAHECIRPTSL 334
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK---YLLHPGF 447
+ LYD I R I +L +++ ++ V E T E K YL+ G
Sbjct: 335 REEIPEREELRLLYDLIFRRTIASLMKEMLLERE----KVTVEAITPELKHPVYLVAKGL 390
Query: 448 TGVMT-WS-----AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHG 501
V WS + E +P+ GDL+ + + ERKT PP TE LI +EK G
Sbjct: 391 KIVFDGWSRVYPSEITEEKLPELYEGDLLDLVKTTLEERKTQPPPRYTEGTLIKTLEKLG 450
Query: 502 IGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVH 540
IG ++ + + +R YV V + LVPT + +V
Sbjct: 451 IGRPSTYATIVKTLKERGYVEVKK-KALVPTEIAFQVVE 488
>sp|Q9PLZ2|TOP1_CAMJE DNA topoisomerase 1 OS=Campylobacter jejuni subsp. jejuni serotype
O:2 (strain NCTC 11168) GN=topA PE=3 SV=1
Length = 700
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 120/479 (25%), Positives = 213/479 (44%), Gaps = 46/479 (9%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L ++AKD + + L D D+EGE I + + +A+ N T+ R F IT I+ A
Sbjct: 68 LKSKAKDAKEVYLATDEDREGEAIAYHIAKAIGKDEN-----TLPRIVFHEITKSAIENA 122
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
+ N K N+ + R+ LD +G + + Q +S G Q+ L
Sbjct: 123 LKNPRKLNMHSVNAQQTRRLLDRIVGYKLSPLLGQKIQ--------RGLSAGRVQSAALK 174
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHI-----FDKSTCNVFFKAVEK 274
V+R +IR F P Y+ +D+ + A V + + I +K + +A +
Sbjct: 175 IIVDREKEIRAFVPLEYFSIDMIFQKDLDAELVEFDKAKIEKLTITNKDRAKLILEACKN 234
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY--------TQ 326
E + ++ D++S + P T L + AS+ LG P M IA++LY
Sbjct: 235 EVY-SISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTMMIAQKLYEGVNTHEGVM 293
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQES-SPDWGDHVREVLSNGISKPRKGKDVGDHPPI 385
G ++Y RT++ N AV ++ ++G +N + KG H I
Sbjct: 294 GVITYMRTDSL----NLAKEAVENARKFIQANFGKDYLPSKANVYTTKTKGAQEA-HEAI 348
Query: 386 TPTKLATRTQ-----LDGDAWRLYDYIVRHFIG-TLCGDLVYTQKVAKFSVADEM-FTME 438
PT L+ + LD D +LY I F+ + + TQ V F D + F +
Sbjct: 349 RPTNLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMSPAISQTQNV--FVKNDRVVFKIS 406
Query: 439 AKYLLHPGFTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLM 497
+ +L G+ V + M K++ +P+FK G + +Q+++M T PP +E+ L+ +
Sbjct: 407 GRKILFDGYYKV--YGDMDKDKILPNFKIGQNLKVQNLEMNSHFTEPPSRYSEAGLVKKL 464
Query: 498 EKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
E GIG ++ I+ + R+YVT+ ++L+P+ + + +K ++V+ S
Sbjct: 465 ESLGIGRPSTYAPTISILTSRDYVTIDK-KQLIPSDVAFNVTEVLEKNFSDIVDSKFTS 522
>sp|P43012|TOP1_HAEIN DNA topoisomerase 1 OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=topA PE=3 SV=1
Length = 868
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 119/459 (25%), Positives = 197/459 (42%), Gaps = 32/459 (6%)
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT 152
K K+ + L + AK + + L D D+EGE I + + E + + S R F+ IT
Sbjct: 95 KEKVVSELKSLAKKADHIYLATDLDREGEAIAWHLREVIGGNDDRFS-----RVVFNEIT 149
Query: 153 DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGP 212
IK A + N+ + R+ LD +G + K A +S G
Sbjct: 150 KNAIKQAFEKPEQLNMDRVNAQQTRRFLDRVVGFMVSPLLWKKV--------ARGLSAGR 201
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYW---LLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFF 269
Q+ + VER +I+ F+PE YW +L N + + VT +G FD
Sbjct: 202 VQSVAVKLLVEREREIKAFQPEEYWEVAVLTNNQNKQAIRLDVTDYKGKKFDPKNQKEAQ 261
Query: 270 KAVE--KEKHVTVVDVQSSTKSKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
AV+ V D+++ S ++P+A T L + AS+ LG G M +A+RLY
Sbjct: 262 SAVDFLNVSDYVVTDLETKPTS-SRPRAPFITSTLQQTASTRLGFGVKKTMMLAQRLYEA 320
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY++Y RT++T + D + + R + +G N S ++ H I
Sbjct: 321 GYITYMRTDSTNLSQ--DALNMARTYIEN-HFGAQYLPEKPNFYSSKENAQEA--HEAIR 375
Query: 387 PTKL-ATRTQLDG---DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYL 442
P+ + A L+G DA RLYD I F+ Y + D + + L
Sbjct: 376 PSDIRALPESLEGMEKDAVRLYDLIWCQFLACQMPPAQYDSSTLTVTAGDYTLKAKGRIL 435
Query: 443 LHPGFTGVMTWSAM--KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKH 500
G+T V+ +++ +P + + ++ V+ + T PP TE+ L+ +EK
Sbjct: 436 RFDGWTKVLPQIGKNPEDQELPSVTVSEKLALKEVQPTQHFTKPPARFTEAALVKELEKR 495
Query: 501 GIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
GIG ++ I+ I +R YV T RR +G ++
Sbjct: 496 GIGRPSTYAAIISTIQERGYVR-TENRRFYAEKMGEIVT 533
>sp|P96583|TOP3_BACSU DNA topoisomerase 3 OS=Bacillus subtilis (strain 168) GN=topB PE=3
SV=1
Length = 727
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 106/419 (25%), Positives = 179/419 (42%), Gaps = 49/419 (11%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNL 163
KD +V+ D +EGE + ++E + N+ P K +W S++TDK IK L
Sbjct: 95 KDVNQIVIATDAGREGELVARWIIE----KANVRKPIKRLW---ISSVTDKAIKEGFQKL 147
Query: 164 VKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
+E S AR E D +G TR T F + +S G QTPTL
Sbjct: 148 RSGKEYENLYHSAVARAEADWIVGINATRALTTKFNAQ--------LSCGRVQTPTLAMI 199
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWS-----RGHIFDKSTCNVFFKAVEKEK 276
+R I+ F P PY+ + ++ +++TW + F++ + K ++ K
Sbjct: 200 AKREADIQAFTPVPYYGIRAAVD----GMTLTWQDKKSKQTRTFNQDVTSRLLKNLQG-K 254
Query: 277 HVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTE 335
V +++ + K P + EL R A G + + ++LY Q V+YPRT+
Sbjct: 255 QAVVAELKKTAKKSFAPALYDLTELQRDAHKRFGFSAKETLSVLQKLYEQHKLVTYPRTD 314
Query: 336 TTQYPENFDLVAVLRQQ----ESSPDWGDHVREVLSNGISKPRKG----KDVGDHPPITP 387
+ D+V L+ + E P + +V ++ GI K KG V DH I P
Sbjct: 315 SRFLSS--DIVPTLKDRLEGMEVKP-YAQYVSQIKKRGI-KSHKGYVNDAKVSDHHAIIP 370
Query: 388 TKL-ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
T+ + L +LYD I + F+ L Y + + E FT + K + G
Sbjct: 371 TEEPLVLSSLSDKERKLYDLIAKRFLAVLMPAFEYEETKVIAEIGGETFTAKGKTVQSQG 430
Query: 447 FTGVMTWS-------AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
+ V + +++++P + GD + ++++ +T PP E L+S ME
Sbjct: 431 WKAVYDMAEEDDEQEDDRDQTLPALQKGDTLAVRTLTETSGQTKPPARFNEGTLLSAME 489
>sp|P06612|TOP1_ECOLI DNA topoisomerase 1 OS=Escherichia coli (strain K12) GN=topA PE=1
SV=2
Length = 865
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 119/471 (25%), Positives = 196/471 (41%), Gaps = 34/471 (7%)
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT 152
K K+ + L A+ + + L D D+EGE I + + E + S R F+ IT
Sbjct: 89 KEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLREVIGGDDARYS-----RVVFNEIT 143
Query: 153 DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGP 212
I+ A + NI + AR+ +D +G + K A +S G
Sbjct: 144 KNAIRQAFNKPGELNIDRVNAQQARRFMDRVVGYMVSPLLWKKI--------ARGLSAGR 195
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDL---TLNLNGVAVSVTWSRGHIF---DKSTCN 266
Q+ + VER +I+ F PE +W +D T + +A+ VT F +K
Sbjct: 196 VQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQTQ 255
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYT 325
+EK ++ + T SK P A T L + AS+ LG G M +A+RLY
Sbjct: 256 AAVSLLEKARYSVLEREDKPTTSK--PGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYE 313
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPI 385
GY++Y RT++T + D V ++R S ++G N + ++ H I
Sbjct: 314 AGYITYMRTDSTNLSQ--DAVNMVRGYISD-NFGKKYLPESPNQYASKENSQEA--HEAI 368
Query: 386 TPTKLATRTQ----LDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKY 441
P+ + + ++ DA +LY I R F+ Y D +
Sbjct: 369 RPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRI 428
Query: 442 LLHPGFTGVMTWSAMKNES--IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK 499
L G+T VM +E +P GD + + + + T PP +E+ L+ +EK
Sbjct: 429 LRFDGWTKVMPALRKGDEDRILPAVNKGDALTLVELTPAQHFTKPPARFSEASLVKELEK 488
Query: 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELV 550
GIG ++ I+ I R YV V + RR +G ++ ++ REL+
Sbjct: 489 RGIGRPSTYASIISTIQDRGYVRVEN-RRFYAEKMGEIVTDRLEENFRELM 538
>sp|P0A2I1|TOP1_SALTY DNA topoisomerase 1 OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=topA PE=3 SV=1
Length = 865
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 120/478 (25%), Positives = 201/478 (42%), Gaps = 48/478 (10%)
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT 152
K K+ + L A+ + + L D D+EGE I + + E + S R F+ IT
Sbjct: 89 KEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLREVIGGDDARYS-----RVVFNEIT 143
Query: 153 DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGP 212
I+ A + NI + AR+ +D +G + K A +S G
Sbjct: 144 KNAIRQAFEQPGELNINRVNAQQARRFMDRVVGYMVSPLLWKKI--------ARGLSAGR 195
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDL-TLNLNGVAVSVTWSRGHIFDKSTCNVFFKA 271
Q+ + VER +I+ F PE +W +D T +G A+ + + H DK F+
Sbjct: 196 VQSVAVRLVVEREREIKAFVPEEFWEIDANTTTPSGEALPLQVT--HQNDKP-----FRP 248
Query: 272 VEKEKHVTVVDVQSSTK----------SKTKPQA-LNTVELMRVASSGLGMGPHHAMQIA 320
V +E+ + V + + + +KP A T L + AS+ LG G M +A
Sbjct: 249 VNREQTLAAVSLLEKARYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGFGVKKTMMMA 308
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHV--REVLSNGISKPRKGKD 378
+RLY GY++Y RT++T + D V ++R GD+ + + N K
Sbjct: 309 QRLYEAGYITYMRTDSTNLSQ--DAVNMVRGY-----IGDNFGKKYLPDNPNQYASKENS 361
Query: 379 VGDHPPITPTKLATRTQ----LDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM 434
H I P+ +A + ++ DA +LY I R F+ Y +
Sbjct: 362 QEAHEAIRPSDVAVMAESLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLTVGAGEFR 421
Query: 435 FTMEAKYLLHPGFTGVMTWSAMKNE--SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESE 492
+ L G+T VM +E ++P GD + + + + T PP +E+
Sbjct: 422 LKARGRILRFDGWTKVMPALRKGDEDRTLPAVNKGDALTLLELTPAQHFTKPPARFSEAS 481
Query: 493 LISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELV 550
L+ +EK GIG ++ I+ I R YV V + RR +G ++ ++ REL+
Sbjct: 482 LVKELEKRGIGRPSTYASIISTIQDRGYVRVEN-RRFYAEKMGEIVTDRLEENFRELM 538
>sp|P0A2I2|TOP1_SALTI DNA topoisomerase 1 OS=Salmonella typhi GN=topA PE=3 SV=1
Length = 865
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 120/478 (25%), Positives = 201/478 (42%), Gaps = 48/478 (10%)
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT 152
K K+ + L A+ + + L D D+EGE I + + E + S R F+ IT
Sbjct: 89 KEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLREVIGGDDARYS-----RVVFNEIT 143
Query: 153 DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGP 212
I+ A + NI + AR+ +D +G + K A +S G
Sbjct: 144 KNAIRQAFEQPGELNINRVNAQQARRFMDRVVGYMVSPLLWKKI--------ARGLSAGR 195
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDL-TLNLNGVAVSVTWSRGHIFDKSTCNVFFKA 271
Q+ + VER +I+ F PE +W +D T +G A+ + + H DK F+
Sbjct: 196 VQSVAVRLVVEREREIKAFVPEEFWEIDANTTTPSGEALPLQVT--HQNDKP-----FRP 248
Query: 272 VEKEKHVTVVDVQSSTK----------SKTKPQA-LNTVELMRVASSGLGMGPHHAMQIA 320
V +E+ + V + + + +KP A T L + AS+ LG G M +A
Sbjct: 249 VNREQTLAAVSLLEKARYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGFGVKKTMMMA 308
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHV--REVLSNGISKPRKGKD 378
+RLY GY++Y RT++T + D V ++R GD+ + + N K
Sbjct: 309 QRLYEAGYITYMRTDSTNLSQ--DAVNMVRGY-----IGDNFGKKYLPDNPNQYASKENS 361
Query: 379 VGDHPPITPTKLATRTQ----LDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM 434
H I P+ +A + ++ DA +LY I R F+ Y +
Sbjct: 362 QEAHEAIRPSDVAVMAESLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLTVGAGEFR 421
Query: 435 FTMEAKYLLHPGFTGVMTWSAMKNE--SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESE 492
+ L G+T VM +E ++P GD + + + + T PP +E+
Sbjct: 422 LKARGRILRFDGWTKVMPALRKGDEDRTLPAVNKGDALTLLELTPAQHFTKPPARFSEAS 481
Query: 493 LISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELV 550
L+ +EK GIG ++ I+ I R YV V + RR +G ++ ++ REL+
Sbjct: 482 LVKELEKRGIGRPSTYASIISTIQDRGYVRVEN-RRFYAEKMGEIVTDRLEENFRELM 538
>sp|Q8K9P7|TOP1_BUCAP DNA topoisomerase 1 OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=topA PE=3 SV=1
Length = 853
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 118/469 (25%), Positives = 206/469 (43%), Gaps = 32/469 (6%)
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT 152
K K+ + L N A ++ L D D+EGE I + + E I NS K R F+ IT
Sbjct: 83 KEKIISELKNIANKVHYIYLATDLDREGEAIAWHLKEV----IGGNSLK-FRRVVFNEIT 137
Query: 153 DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFT-RYQTKFFQGKYGDLDASLISYG 211
K I+ A N+ K N+ S AR+ +D +G + K +G +S G
Sbjct: 138 KKSIEKAFQNIGKINMNRVYSQQARRFMDRIVGYMISPLLWKKISRG---------LSAG 188
Query: 212 PCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL---NLNGVAVSVTWSRGHIFDKSTCNVF 268
Q+ + +R +I+ F +W + L+L V + +T R F +
Sbjct: 189 RVQSAAVRLITDREYEIKNFIEREHWKISLSLLSKENKKVTMDITHYRNKTFLLNNKKEV 248
Query: 269 FKAVEKEKHVT--VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+EK K+++ + D + K P L T L + ++ LG M +A++LY Q
Sbjct: 249 NSTIEKIKNLSFIITDRKDKIFKKKPPAPLITSTLQQASNIDLGFSVKKTMFLAQKLYEQ 308
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY++Y RT++ + N+ + V E+ +G SN S + ++ H I
Sbjct: 309 GYITYIRTDS-YFLSNYAIEKVRSYIENF--YGSDFLPKKSNIYSNQKYSQEA--HEAIR 363
Query: 387 PT--KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA--KYL 442
P+ ++ D DA +LY I +FI + Y K K +V ++F +++ K +
Sbjct: 364 PSDVQVVNIDNCDPDAKKLYKLIWNYFIASQMKSERY--KSIKTTVMADVFKLQSNTKIV 421
Query: 443 LHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGI 502
L G+T ++ S N P G + + + + T PP +ES L+ +EK GI
Sbjct: 422 LFSGWTKILKKSNNVNFKFPVLDIGTTLILDKILPHQIFTKPPPRFSESSLVRELEKKGI 481
Query: 503 GTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVE 551
G ++ I I ++ Y+ + + +G +L+ +K +LV+
Sbjct: 482 GRPSTYATIITKIKEKGYLKIKKN-KFYAAKIGEILITRLKKNFSDLVD 529
>sp|Q9PHK2|TOP1P_XYLFA DNA topoisomerase I, plasmid OS=Xylella fastidiosa (strain 9a5c)
GN=XF_a0003 PE=3 SV=1
Length = 660
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 125/481 (25%), Positives = 200/481 (41%), Gaps = 78/481 (16%)
Query: 98 AFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIK 157
A L N K + + L D D+EGE I + + + ++ +++P R F+ IT +K
Sbjct: 62 AKLKNLLKQADSVYLATDPDREGEAISWHLQQCLK----LSNP---LRVTFNEITANAVK 114
Query: 158 AAMWNLVKPNIFEARSV---DARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQ 214
A+ LV P + + V +AR+ LD +G + ++ L +S G Q
Sbjct: 115 AS---LVAPRTIDVKRVAAQEARRVLDRLVGYMVSPELSR--------LTGKRLSAGRVQ 163
Query: 215 TPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWS-------------RGHIFD 261
+P + VER +I+ FK ++ L S WS + D
Sbjct: 164 SPAVRLVVEREREIKAFKVTNHF--GAMLFFADAKTSGEWSAEWLTKPKFVAEDNPYFMD 221
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
+ F AV + K V V S ++ P T + + AS LG+ P AM A+
Sbjct: 222 RD----FAAAVAQVKAVVVKSFDESEAKRSPPPPFTTSTMQQAASVTLGVDPKAAMDAAQ 277
Query: 322 RLYTQGYVSYPRTETTQYPENF--DLVAVLRQQESSPDWGDHVREVLSNGISKPRK---- 375
+LY QG+++Y RT+ + D+ AV S G + E KPRK
Sbjct: 278 KLYEQGHITYHRTDNPNVSDESLGDIYAV------SVKLGLDIAE-------KPRKFKAP 324
Query: 376 -GKDVGDHPPITPTKLATRTQLD-GDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADE 433
G VG HP +TPT + D LY I I D Y + + A
Sbjct: 325 AGAQVG-HPAVTPTHWEVEEAGETSDQKALYKLIRLRAIACQLADARYAVRTVRLEAAQP 383
Query: 434 M------FTMEAKYLLHPGFTGVMTWSAMKNES---------IPDFKPGDLIPIQSVKMV 478
+ F + L++ G+ ++ + E IP PG+ + + K++
Sbjct: 384 VGGKNVEFEARGRTLIYQGWLKLIAGDQTEEEDGNEKESSNPIPVCAPGECLDVARGKLL 443
Query: 479 ERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
E+KT PP + T++ L+ +E GIG A+ ++NI R YV T + L PT G ++
Sbjct: 444 EKKTKPPSHYTQATLVKKLESEGIGRPATYAAIMDNIVSRGYVK-TEKKYLFPTETGELI 502
Query: 539 V 539
V
Sbjct: 503 V 503
>sp|Q9X3X7|TOP1_ZYMMO DNA topoisomerase 1 OS=Zymomonas mobilis subsp. mobilis (strain
ATCC 31821 / ZM4 / CP4) GN=topA PE=3 SV=3
Length = 1212
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 114/461 (24%), Positives = 194/461 (42%), Gaps = 48/461 (10%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLV 164
K+ + L+L D D+EGE I + ++E + + P V R F+AIT + AM +
Sbjct: 70 KESDSLILATDPDREGEAISWHILELL--KTKKLLPDDVERVTFNAITKAAVTDAMAHPR 127
Query: 165 KPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVER 224
+ + + AR+ LD +G + + G S G Q+ L V+R
Sbjct: 128 QLDNDLINAYLARRALDYLVGFTLSPILWRKLPGAK--------SAGRVQSVALRLVVDR 179
Query: 225 HDKIRTFKPEPYWLLDLTLNLNGVAVS---VTWSRGH------IFDKSTCNVFFKAVEKE 275
+I FKP+ YW ++ + + + + + W RG I DK+ VE
Sbjct: 180 EQEIEGFKPQEYWSVEADMEADSIGFTSRLIQW-RGQKLEKLSIADKTQAEAAQSDVES- 237
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTE 335
H TV +V++ S+ T L + A+ LG H M++A+ LY +G ++Y RT+
Sbjct: 238 GHFTVSNVETKPVSRNPQPPFTTSTLQQEAARKLGFAASHTMRLAQSLYEEGLITYMRTD 297
Query: 336 TTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPR----KGKDVGD-HPPITPTKL 390
Q E+ +A R+ + G +V + KPR K K+ + H I PT
Sbjct: 298 GVQMDES--AIAAARKTITQRYDGGYVPD-------KPRQYQVKAKNAQEAHEAIRPTDF 348
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFS--VADEMFTMEAKYLLHPGFT 448
+ GD RLY+ I + + + + + + + + +L GF
Sbjct: 349 SRDKAASGDHARLYELIWKRALASQMASAKLERTTVDLTDGTGQNVLRVTGQVVLFSGFL 408
Query: 449 GVMTWSAMKNES----------IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
+ SA N + +P + GD + V+ + T PP +E+ L+ ME
Sbjct: 409 TLYEESADDNANDRDGKEGRARLPLLRAGDAPLKKEVRADQHFTQPPPRYSEASLVKKME 468
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
GIG ++ I + R YVT+ R +P+ G +L
Sbjct: 469 DLGIGRPSTYASVIQVLKDRAYVTLER-NRFIPSEAGRLLT 508
>sp|Q5HLZ4|TOP3_STAEQ DNA topoisomerase 3 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=topB PE=3 SV=1
Length = 711
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 99/414 (23%), Positives = 184/414 (44%), Gaps = 51/414 (12%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLV 164
K+ + +++ D +EGE + +++ V + K + R S++T K I+ L
Sbjct: 94 KNVKEIIIATDAGREGELVARLILDKV------GNKKPIKRLWISSVTKKAIQEGFKQLK 147
Query: 165 KPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
N ++ + AR E D +G TR T + DA L S G QTPT+
Sbjct: 148 NGNAYQNLYEAALARSEADWIVGINATRALTTKY-------DAQL-SLGRVQTPTIQIVK 199
Query: 223 ERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVD 282
R D+I FKPE Y+ L++N++G +++ + + DK + + K + +++
Sbjct: 200 SRQDEINYFKPEKYYT--LSINVDGYDLNLKQQKRYK-DKKELELIEHKI-KHQEGKILE 255
Query: 283 VQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETTQYPE 341
V+ K N +L + A MGP + + LY + V+YPRT++ +
Sbjct: 256 VKGKNKKSYAQPLFNLTDLQQEAYKHYKMGPKETLNTLQHLYERHKLVTYPRTDSNYLTD 315
Query: 342 NFDLVAVLRQQES---SPDWGDHVREVLSNGISKPR---KGKDVGDHPPITPTKLA-TRT 394
D+V ++++ + D+ HVR+++S S + V DH I PT++ +
Sbjct: 316 --DMVDTIQERLRAILATDYKSHVRDLISESFSSKMHIFNNQKVSDHHAIIPTEVRPSIE 373
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK-----YLLHPGFTG 449
QL +++Y I F+ L +Y E+ T+ A+ ++L
Sbjct: 374 QLSQREFKIYMLIAERFLENLMNPYLY-----------EVLTIHAQLKDYNFVLKEIIPK 422
Query: 450 VMTWSAMKNES-----IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
+ + A+K+++ FK G L + +++ E +T P+Y E L+ ME
Sbjct: 423 QLGYKALKDQTSSHTLTHSFKEGQLFKVHRIEIHEHETKAPEYFNEGSLLKAME 476
>sp|Q8CRF7|TOP3_STAES DNA topoisomerase 3 OS=Staphylococcus epidermidis (strain ATCC
12228) GN=topB PE=3 SV=1
Length = 711
Score = 109 bits (272), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 99/414 (23%), Positives = 184/414 (44%), Gaps = 51/414 (12%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLV 164
K+ + +++ D +EGE + +++ V + K + R S++T K I+ L
Sbjct: 94 KNVKEIIIATDAGREGELVARLILDKV------GNKKPIKRLWISSVTKKAIQEGFKQLK 147
Query: 165 KPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
N ++ + AR E D +G TR T + DA L S G QTPT+
Sbjct: 148 NGNAYQNLYEAALARSEADWIVGINATRALTTKY-------DAQL-SLGRVQTPTIQIVK 199
Query: 223 ERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVD 282
R D+I FKPE Y+ L++N++G +++ + + DK + + K + +++
Sbjct: 200 SRQDEINYFKPEKYYT--LSINVDGYDLNLKQQKRYK-DKKELELIEHKI-KHQEGKILE 255
Query: 283 VQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPRTETTQYPE 341
V+ K N +L + A MGP + + LY + V+YPRT++ +
Sbjct: 256 VKGKNKKSYAQPLFNLTDLQQEAYKRYKMGPKETLNTLQHLYERHKLVTYPRTDSNYLTD 315
Query: 342 NFDLVAVLRQQES---SPDWGDHVREVLSNGISKPR---KGKDVGDHPPITPTKLA-TRT 394
D+V ++++ + D+ HVR+++S S + V DH I PT++ +
Sbjct: 316 --DMVDTIQERLRAILATDYKSHVRDLISESFSSKMHIFNNQKVSDHHAIIPTEVRPSIE 373
Query: 395 QLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK-----YLLHPGFTG 449
QL +++Y I F+ L +Y E+ T+ A+ ++L
Sbjct: 374 QLSQREFKIYMLIAERFLENLMNPYLY-----------EVLTIHAQLKDYNFVLKEIIPK 422
Query: 450 VMTWSAMKNES-----IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
+ + A+K+++ FK G L + +++ E +T P+Y E L+ ME
Sbjct: 423 QLGYKALKDQTSSHTLTHSFKEGQLFKVHRIEIHEHETKAPEYFNEGSLLKAME 476
>sp|Q1RIM1|TOP1_RICBR DNA topoisomerase 1 OS=Rickettsia bellii (strain RML369-C) GN=topA
PE=3 SV=1
Length = 800
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 131/514 (25%), Positives = 214/514 (41%), Gaps = 50/514 (9%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
FK+ + GHI D SK + V P E FS + E K + A + +AK E +
Sbjct: 23 FKVIASFGHIR--DLPSKKGS---VIPDENFSMKYDISEKAGKY-VDAIIK-DAKKAESV 75
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
L D D+EGE+I + + E ++ + + S R F+ IT K I A+ N K +
Sbjct: 76 YLATDPDREGESISWHIAEVIKEKNKVKSDDFFKRVAFNEITKKAITHAIENPRKLDNNL 135
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
+ AR+ LD +G + + G S G Q+ L ER D+I
Sbjct: 136 VNAQQARRALDYLVGFTLSPLLWRKLPG--------CKSAGRVQSVALRLICEREDEIER 187
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTV--------VD 282
FK E YW + L + LN T HI D+ ++ K +T VD
Sbjct: 188 FKSEEYWDISLKM-LNSNNELFTAKLTHINDQKLEKFSITNDKEAKDLTEKLKSQNFHVD 246
Query: 283 VQSSTKSKTKPQ-ALNTVELMRVASSGLGMGPHHAMQIAERLY--------TQGYVSYPR 333
+ K +PQ T L + A+ LG MQIA++LY T G ++Y R
Sbjct: 247 KIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKETIGLITYMR 306
Query: 334 TETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLA-- 391
T+ D V +R+ + D+GD S I K + H I PT +
Sbjct: 307 TDGVTLSN--DAVDEIRKL-INKDYGDKYLPS-SPRIYKSKVKNAQEAHEAIRPTNINYI 362
Query: 392 ---TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK--YLLHPG 446
+ +L+ D ++LY+ I + I +++ A + ++ + A + G
Sbjct: 363 PNDLKEKLEKDYYKLYELIWKRTIACQMENVIMDLVNATLASENKEYLARANGSTIAFDG 422
Query: 447 FTGVMTWS-----AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHG 501
F V S +N+ +P K + + + + + T PP +E+ L+ +E+ G
Sbjct: 423 FYKVYRESIDDEAEEENKMLPPLKEQEHLKTKEIIPNQHFTEPPPRYSEASLVKKLEELG 482
Query: 502 IGTDASIPVHINNICQRNYVTVTSGRRLVPTSLG 535
IG ++ ++ + R YVT+ +R +P LG
Sbjct: 483 IGRPSTYATILSVLQDRKYVTLEK-KRFIPEELG 515
>sp|O83409|TOP1_TREPA DNA topoisomerase 1 OS=Treponema pallidum (strain Nichols) GN=topA
PE=3 SV=1
Length = 731
Score = 105 bits (262), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 128/572 (22%), Positives = 241/572 (42%), Gaps = 88/572 (15%)
Query: 3 LRVKKLVPASEIKLARPSLISLLTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMG 62
+ V+ L P + AR L+ + +P + A ++ +++G + + + GH++
Sbjct: 1 MEVRGLQPKRQKTFARKHLVIVESPAK----AQTIEKYLG------TQYVVRASMGHVID 50
Query: 63 L-----------DFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLV 111
L DF +Y + C E R + K L FLA+
Sbjct: 51 LPKSRLAIDIEHDFQPEY-----ITVRGRAQCLKELRTLS-KQSLQVFLAS--------- 95
Query: 112 LWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
D D+EGE I + + +++ Q ++P + R F+ IT I+AA+ + V + +
Sbjct: 96 ---DRDREGEAIAYHLAQSI--QAYCDTP--IKRIVFNEITPHAIRAAIGHPVPIDTAKV 148
Query: 172 RSVDARQELDLRIG---CAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKI 228
+ AR+ LD +G C ++ K + +S G Q+ L ER ++
Sbjct: 149 NAQKARRVLDRLVGYHLCPLLWHKVK-----------NGLSAGRVQSVALRLICEREVEV 197
Query: 229 RTFKPEPYWLLDLTLNLNGVAVS----VTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQ 284
+ F PE YW ++ T + + S + + +F + + V ++
Sbjct: 198 KRFVPEEYWTVEGTFEKDKKSFSALLILIQGKKAVFKSKQEATSAIGLFSQSEARVSQIR 257
Query: 285 SSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ--------GYVSYPRTET 336
S K+ Q T L + A++ LG MQ+A++LY G ++Y RT++
Sbjct: 258 SFEKNVRPKQPFTTSTLQQCAANRLGFTSRKTMQVAQQLYEGVSLGTHRVGLITYMRTDS 317
Query: 337 TQYPENFDLVAVLRQQESSPDW-GDHVREVLSNGISK-PRKGKDVGDHPPITPTKLA--- 391
+ E A +++ + W H + L ++ KGK H I PT +A
Sbjct: 318 VRVSE-----AAVKEVRA---WIATHFSDALPGTPNRYAAKGKSQDAHEAIRPTYVAHTP 369
Query: 392 --TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTG 449
+ L D RLY I F+ + D + + +F+ ++ GF
Sbjct: 370 ERIKAHLTRDQIRLYTLIWERFVASQMTDARVRSLTFEITAGPAVFSATETQVIEQGFYR 429
Query: 450 VMTWSAMKNES---IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDA 506
V+ + K+ S +P K G+++ + +V+ V+ T P T++ ++ ++E+ GIG +
Sbjct: 430 VLKMLSPKDLSKAVLPPTKEGEVVALHNVQSVQHFTQGPVRYTDASIVKMLEEKGIGRPS 489
Query: 507 SIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
+ I+ + R YVT ++L+PT LG V+
Sbjct: 490 TYAPTISVLLDRYYVTRIQ-KQLMPTPLGKVI 520
>sp|Q9KRB2|TOP1_VIBCH DNA topoisomerase 1 OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=topA PE=3 SV=1
Length = 876
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 118/459 (25%), Positives = 192/459 (41%), Gaps = 33/459 (7%)
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT 152
K K+ A L AKD + + L D D+EGE I + + E + K R F+ IT
Sbjct: 97 KEKVVAELQKLAKDADSVYLATDLDREGEAIAWHLREIIG-----GDEKRYKRVVFNEIT 151
Query: 153 DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGP 212
I+ A + N+ + AR+ +D +G + K A +S G
Sbjct: 152 KNAIQQAFKQPGELNMDGVNAQQARRFMDRVVGFMVSPLLWKKV--------ARGLSAGR 203
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLD---LTLNLNGVAVSVTWSRGHIF---DKSTCN 266
Q+ + VER +I+ F PE +W ++ LT + + V G F +++
Sbjct: 204 VQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQDFRLLVAQKDGLAFKPVNETEAL 263
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYT 325
A+ K ++ T SK P A T L + AS+ LG G M +A+RLY
Sbjct: 264 AAVAALNKAQYEVCKREDKPTTSK--PSAPFITSTLQQAASTRLGYGVKKTMMLAQRLYE 321
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPI 385
GY++Y RT++T + + V LR + +G+ N + ++ H I
Sbjct: 322 AGYITYMRTDSTNL--SAEAVENLRGY-ITKHYGEAYLPSQPNVYGSKQNAQEA--HEAI 376
Query: 386 TPTKLA-TRTQLDG---DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKY 441
P+ + T L+G DA +LY I F+ Y A+ + +
Sbjct: 377 RPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDSTTVSVKAAEYTLKAKGRI 436
Query: 442 LLHPGFTGVMT-WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKH 500
L G+T V +++ +P K GD + + S+ + T PP TE+ L+ +EK
Sbjct: 437 LKFDGWTRVQRPLGKNEDQILPPVKVGDSLKLVSLDPKQHFTKPPARYTEAALVKELEKR 496
Query: 501 GIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
GIG ++ I+ I R YV V RR +G ++
Sbjct: 497 GIGRPSTYASIISTIQDRGYVKVDQ-RRFFAEKMGEIVT 534
>sp|Q9YB01|TOP1_AERPE DNA topoisomerase 1 OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=topA PE=3 SV=1
Length = 673
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 110/455 (24%), Positives = 194/455 (42%), Gaps = 37/455 (8%)
Query: 115 DCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSV 174
D D EG I F+++EA ++N + R +FS + +DI+ A + + ++ +
Sbjct: 103 DYDIEGSVIGFKIIEAFG---DVNRAR---RMKFSTLAPQDIRRAYARMERLDVEMIEAG 156
Query: 175 DARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPE 234
AR E+D G +R + + ++S G Q+PTL VE + + R
Sbjct: 157 MARSEMDWLWGINVSRALMEAARRAA--GRRVILSAGRVQSPTL---VEAYRRWRE---- 207
Query: 235 PYWLLDLTLNLNGVAVSVTWSRGH-IFDK----------STCNVFFKAVEKEKHVTVVDV 283
++L + VAV +T +G +FD T + K + V +V
Sbjct: 208 ----INLHVPKASVAVKITAEKGGGVFDARPHGWKPQSLETARSIKSELRKNPWLAVEEV 263
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
+S P A N +L + A+ LG+ P IAE LY + +SYPRT + + P +
Sbjct: 264 RSERSILRPPPAFNLGDLQKEANRILGLPPLRTQSIAEELYLEALISYPRTNSQKLPPSI 323
Query: 344 DLVAVLRQQESSPDWGDHVREVL--SNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDA 400
+ A+L + P G RE+L + G+ +P +G KD HP I PT +L +
Sbjct: 324 NYRAILDKLAHGP-LGREARELLKETGGVLRPVQGSKDDPAHPAIHPTGEKPSQRLSKEH 382
Query: 401 WRLYDYIVRHFIGTLCGD-LVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNE 459
+Y+ IVR F+ + +V V ++ E + G+ +S +
Sbjct: 383 MAVYELIVRRFLAAFSREAIVSKSSVLLRDFQGRVWRAEGLRVEDLGWLKYYHYSTPGEK 442
Query: 460 SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRN 519
+P GD + V + + P L ++ L+ ME IGT+ + I + +R
Sbjct: 443 PMPPLDRGDKARVVRVDVRVEWSQTPVRLDKASLLRWMESVNIGTEGTRARIIETLYKRG 502
Query: 520 YVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTM 554
Y+ + + P + ++ Q + EL +P +
Sbjct: 503 YLEGSRKSEVTPLGEAVAVI--IQTLFPELSKPDL 535
>sp|P40114|TOP1_BACAN DNA topoisomerase 1 OS=Bacillus anthracis GN=topX PE=3 SV=2
Length = 870
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 120/472 (25%), Positives = 205/472 (43%), Gaps = 57/472 (12%)
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKT-VWRARFSAITDKDIKAAMWNLV 164
D + V D D+EGE I EV E +N ++ V+++ F A +++AA+ L
Sbjct: 86 DVDHAVNICDADREGELIYREVYEYA----GVNKKQSRVYKSSFEAA---ELEAALNRLE 138
Query: 165 KPNIFE--ARSVDARQELDLRIGCAFTR-YQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221
+ ++ A S ARQ LD +G TR TK Q K+ L+S G Q L
Sbjct: 139 SASKYDGLAYSAKARQYLDYLLGMNITRGCTTKLAQNKF------LLSSGRVQMCLLHEI 192
Query: 222 VERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVV 281
+R I ++ + Y+ L L +L G+ V + + + S + + K++++TV
Sbjct: 193 RQRELAIENYREQSYYHLQLITDL-GLK-PVMKTEDQVLNPSPLKSLGENL-KDQYLTVE 249
Query: 282 DVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYP- 340
D + T+ + N +L + A + L + A + + LY +G+++YPR+ + P
Sbjct: 250 DFKEGTRKQNPKLLYNLTDLYKDAHAQLQINAETAKKHIQNLYEEGFITYPRSSSRHLPT 309
Query: 341 ENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKD---VGDHPPITPTKLATRTQLD 397
E D V + Q + + V+ V + I K D V H I PT + Q +
Sbjct: 310 EQVDRVKGVMQALAKSRYSLLVQSVDIDAIDIKHKTFDDDLVSSHFAIIPT--TKQYQEE 367
Query: 398 GD---AWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM---FTMEAKYLLHPGFTGVM 451
G +LY +V+ F+G VY V S+ D M + ++ L GF V
Sbjct: 368 GRPEIEKQLYSLVVKRFVGNFMRPAVYL--VRDVSLIDAMGNTYQIKESVLREKGFLEVF 425
Query: 452 TWSAMKNESIPDFK-----PGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHG----- 501
+K ES+ FK G + I ++ E KT P TES +++ ME G
Sbjct: 426 -QEEVKEESVETFKVPILQKGQELQIYDFELQESKTKKPALHTESSILTFMETAGRKIDD 484
Query: 502 -----------IGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGY 542
IGT A+ I + ++N++ + G +++ T +G + +
Sbjct: 485 EHLKELMKGKRIGTVATEAAFIPVLHEKNFIDIEKG-KIITTPIGRAFIEQF 535
>sp|Q92IH1|TOP1_RICCN DNA topoisomerase 1 OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=topA PE=3 SV=1
Length = 776
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 128/522 (24%), Positives = 215/522 (41%), Gaps = 66/522 (12%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
FK+ + GHI D SK + V P E F+ + + K + +AK + +
Sbjct: 23 FKVIASFGHIR--DLPSKKGS---VLPDENFAMKYDISDKAGKY--VDAIVKDAKKADAV 75
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
L D D+EGE+I + V E ++ + + S R F+ IT K I A+ N K +
Sbjct: 76 YLATDPDREGESISWHVAEVIKEKNQVKSDDFFKRVAFNEITKKAIIHAVENPRKLDTNL 135
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
+ AR+ LD +G + + G S G Q+ L ER D+I
Sbjct: 136 VNAQQARRALDYLVGFTLSPLLWRKLPG--------CKSAGRVQSVALRLICEREDEIER 187
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEK---------------- 274
FK E YW D++L + S +F +V + +EK
Sbjct: 188 FKSEEYW--DISLKMQN-------SNNELFTAKLTHVNDQKLEKFSIINEKNAKDLTKKL 238
Query: 275 EKHVTVVDVQSSTKSKTKPQ-ALNTVELMRVASSGLGMGPHHAMQIAERLY--------T 325
+ H VD + K +PQ T L + A+ LG MQIA++LY T
Sbjct: 239 KSHKFHVDKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKET 298
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPI 385
G ++Y RT+ D +A +R+ +GD S I K + H I
Sbjct: 299 IGLITYMRTDGVTLSN--DAIADIRKL-IDKSYGDKYLPT-SPRIYKSKVKNAQEAHEAI 354
Query: 386 TPTKL-----ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
PT + + + +LD D ++LY+ I + I +++ VA + ++ + +A
Sbjct: 355 RPTNITYTPDSLKEKLDKDYYKLYELIWKRTIACQMENVIMDLVVANLASENKEYLAKAN 414
Query: 441 --YLLHPGFTGVMTWS-----AMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESEL 493
+ GF V S +N+ +P K + + ++V + T PP +E+ L
Sbjct: 415 GSTIAFDGFYKVYRESMDDEAEEENKMLPPLKEQEPLKTKAVIPNQHFTEPPPRYSEASL 474
Query: 494 ISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLG 535
+ +E+ GIG ++ ++ + R YV + +R +P LG
Sbjct: 475 VKKLEELGIGRPSTYASILSVLQDRKYVALEK-KRFIPEELG 515
>sp|P57371|TOP1_BUCAI DNA topoisomerase 1 OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=topA PE=3 SV=1
Length = 861
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 117/478 (24%), Positives = 199/478 (41%), Gaps = 45/478 (9%)
Query: 61 MGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEG 120
MG+D Y NW E P K + +LK ++AN+ K + L D D+EG
Sbjct: 70 MGID---PYQNWK----FEYHILPG-KEKIISELK---YIANQVKH---IYLATDLDREG 115
Query: 121 ENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQEL 180
E I + + E + R F+ IT I+ A N+ N+ + AR+ +
Sbjct: 116 EAIAWHLKEVIG-----GDSSKFSRVVFNEITQHSIQKAFKNVGHINMNRVHAQQARRFM 170
Query: 181 DLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 240
D +G + K A +S G Q+ + +R I+ F PE YW LD
Sbjct: 171 DRIVGYMISPLLWKKI--------ARGLSAGRVQSVAVRIIADRESIIKNFVPEEYWKLD 222
Query: 241 LTL---NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEK-EKHVTVVDVQSSTKSKTK-PQA 295
++L + + + VT F N AVEK +K +V S K P
Sbjct: 223 VSLISQDKKKINMDVTHYNNKKFRPINENEVSFAVEKIQKSSCIVKNYEEKISYLKAPAP 282
Query: 296 LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESS 355
T L + AS LG M +A++LY +GY++Y RT++ Y + + V + +S
Sbjct: 283 FITSTLQQSASLRLGFSVKKTMFLAQKLYEEGYITYMRTDSN-YLSEYAIKKVRKYIKS- 340
Query: 356 PDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRT----QLDGDAWRLYDYIVRHF 411
++G + N S + ++ H I P+ + + L+ A +LY+ I F
Sbjct: 341 -NYGSNYLPKEPNIYSNEKHSQEA--HEAIRPSDIKIKNIDSDHLNSSAKKLYELIWNQF 397
Query: 412 IGTLCGDLVYTQKVAKFSVADEMFTMEA--KYLLHPGFTGVMTWSAMKNESIPDFKPGDL 469
+ + + Y K +V +MF ++ + ++ G+ V+ P + G
Sbjct: 398 LASQMKSVKY--KSITVTVLADMFKLQKSERIVMFQGWNKVLIEEKNVFSQFPILQTGSQ 455
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGR 527
+ I V ++ T PP +E+ L+ +EK GIG ++ + I R YV + +
Sbjct: 456 LFINKVTPSQKFTKPPPRFSEASLVRELEKKGIGRPSTYSAITSKIQDRGYVKIKKNK 513
>sp|Q9KA23|TOP1_BACHD DNA topoisomerase 1 OS=Bacillus halodurans (strain ATCC BAA-125 /
DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=topA PE=3
SV=1
Length = 690
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 110/466 (23%), Positives = 192/466 (41%), Gaps = 46/466 (9%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L + AK + + L D D+EGE I + + H ++I+ + R F+ IT + IK A
Sbjct: 67 LKSAAKKVKRVYLAADPDREGEAIAWHLA----HSLDIDET-SECRVVFNEITKQAIKDA 121
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
+ N+ + AR+ LD +G + K + K G +S G Q+ +
Sbjct: 122 FKSPRPINMDLVDAQQARRVLDRLVGYNISPLLWK--KVKKG------LSAGRVQSVAVK 173
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW--SRGHIFD----KSTCNVFFKAVE 273
++R +I+ F+PE YW + T L+G + + G + NV K
Sbjct: 174 MIIDREKEIQAFEPEEYWSIQGTFALDGEPFEAKFYGTNGKKVELKSEDDVNNVLAKLKG 233
Query: 274 KEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY--------- 324
+ HV V + ++ P T L + A+ L M +A++LY
Sbjct: 234 DQFHVDSVQKKERKRNPVSP--FTTSSLQQEAARKLNFRAKKTMMLAQQLYEGIDLGKEG 291
Query: 325 TQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPP 384
T G ++Y RT++T+ D ++ +G + + + K +K +D H
Sbjct: 292 TVGLITYMRTDSTRIS---DTAKAETKEYIESKFGKEYAQNGTKAVKKDKKSQDA--HEA 346
Query: 385 ITPTKL-----ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA 439
I PT + + + L D RLY I + + + S +F
Sbjct: 347 IRPTSVERDPKSLKEYLSRDQLRLYKLIWERLVASQMAPAIMDTMTVDLSNEGVLFRATG 406
Query: 440 KYLLHPGFTGVMTW---SAMKNES--IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
+ PGF V K E +P+ + G + + ++ + T PP TE+ L+
Sbjct: 407 SKVKFPGFMKVYIEGNDEGKKEEDRLLPNLQEGQTVTKEEIEPSQHFTQPPPRYTEARLV 466
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVH 540
ME+ GIG ++ ++ I +R YV + RR VPT LG +++
Sbjct: 467 KTMEELGIGRPSTYAPTLDTIQKRGYVALDE-RRFVPTELGEIVLE 511
>sp|O73954|TOP1_PYRFU DNA topoisomerase 1 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=topA PE=3 SV=2
Length = 1060
Score = 102 bits (253), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 140/289 (48%), Gaps = 21/289 (7%)
Query: 53 MTSVCGHIMGL----DFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCE 108
+ S GH+ GL DF Y +D V+ + ++ K A +KL + L+ + E
Sbjct: 46 VASAVGHLYGLAPKNDFFG-YPIFD-VEWVPVYIAEKGKEYAKDYIKLLSVLSKRVR--E 101
Query: 109 FLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKP-- 166
F+V D D EGE I + A+++ ++ P R +FSA+T +D+ A +NL +P
Sbjct: 102 FIVA-CDYDTEGEVIGYT---ALKYACGVD-PGVAKRMKFSALTKRDLIKAWYNL-EPTI 155
Query: 167 NIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHD 226
N A + AR LD G +R T + G ++S G Q PTL F V+R
Sbjct: 156 NFGMANAGIARHILDWYWGVNLSRALTHAIKRASGKW--VVLSTGRVQGPTLKFLVDRER 213
Query: 227 KIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKE-KHVTVVDVQS 285
+I++F P+PYW++ L NG + + + I+D++ V+K VT ++V+
Sbjct: 214 EIQSFVPQPYWVIKLIFEKNGKKYTANYEKDKIWDENEAKRIVLEVKKAPARVTNIEVKQ 273
Query: 286 STKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRT 334
++ P L T L R A S G P + IA+ LY +G+ +P T
Sbjct: 274 QNRNPPVPFDLGT--LQREAYSAFGFSPKKTLDIAQSLYEKGFCLHPDT 320
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 92/211 (43%), Gaps = 3/211 (1%)
Query: 330 SYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPT 388
SYPRTE+ + P+N + +++ P++ + +L KP +GK + HP I PT
Sbjct: 689 SYPRTESQKLPKNLNYKFIIQNLARIPEYRPYAHLLLGMPELKPVEGKKEDPAHPAIYPT 748
Query: 389 KLATR-TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGF 447
R L D LYD IVR F+ V S F + + G+
Sbjct: 749 GEIPRPGDLTKDEALLYDMIVRRFLAVFMEPAVRETVKVTISAGKHKFFISGGRTVKEGW 808
Query: 448 TGVM-TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDA 506
V + ++P F G+ I + VK ++KT PP + + +I ME G+GT A
Sbjct: 809 LRVYGKYVKFDEVTLPTFFIGERIKVLQVKREKKKTKPPARYSPAAVIKKMEDLGLGTKA 868
Query: 507 SIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
+ + + QR Y+ ++ P + ++
Sbjct: 869 TRAQILETLYQRGYIEGKKSIKVTPLGMKVI 899
>sp|Q4L8B8|TOP3_STAHJ DNA topoisomerase 3 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=topB PE=3 SV=1
Length = 711
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 103/407 (25%), Positives = 179/407 (43%), Gaps = 37/407 (9%)
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLV 164
K + +++ D +EGE + +++ V ++ I K +W S++T K I+ L
Sbjct: 94 KKVKEVIIATDAGREGELVARLILDKVHNKKPI---KRLW---ISSVTKKAIQEGFKKLK 147
Query: 165 KPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCV 222
F+ + AR E D +G TR T + DA L S G QTPT+
Sbjct: 148 DGREFQHLYEAALARSEADWIVGINATRALTTKY-------DAQL-SLGRVQTPTIQLVN 199
Query: 223 ERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVD 282
R +I FK + Y+ L + + G+ ++ ++ H+ + + + E +V V+
Sbjct: 200 ARQQEINHFKAKKYYTL--STEIGGLTFQLSTNKQHMTMEDATQIANEIKHVEGNVDSVE 257
Query: 283 VQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPRTETTQYPE 341
+ KS KP N +L + A MGP + + LY + V +YPRT++ +
Sbjct: 258 -KKVKKSHPKP-LYNLTDLQQEAYQRYKMGPKETLNTIQNLYERHKVLTYPRTDSNYLTD 315
Query: 342 NFDLVAVLRQQESS---PDWGDHVREVLSNGIS-KPR--KGKDVGDHPPITPTKLATRTQ 395
D+V ++++ + D+ V+ +L S K R K V DH I PT++ Q
Sbjct: 316 --DMVDTIKERLYALLATDYKSQVKSLLGQSYSSKMRIFKNHKVSDHHAIIPTEVRPDMQ 373
Query: 396 -LDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWS 454
L ++Y + F+ +L Y +V +F K G+ +
Sbjct: 374 SLSNRESKIYMMVAERFLESLMAPHEYEAVRVNVTVGQHIFAFNEKVTRQLGYKAL---- 429
Query: 455 AMKNESIPD---FKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
M N+++ F+ G+ +QS+K+ E +TTPPDY E L+ ME
Sbjct: 430 KMNNDNVVKKVAFQKGEKYHLQSLKVNEHETTPPDYFNEGSLLKAME 476
>sp|Q6GEH9|TOP3_STAAR DNA topoisomerase 3 OS=Staphylococcus aureus (strain MRSA252)
GN=topB PE=3 SV=1
Length = 711
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 108/412 (26%), Positives = 173/412 (41%), Gaps = 38/412 (9%)
Query: 99 FLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKA 158
L N+ KD +++ D +EGE + +++ V + K + R S++T K I+
Sbjct: 91 ILDNKVKD---IIIATDAGREGELVARLILDKV------GNKKPLRRLWISSVTKKAIQQ 141
Query: 159 AMWNLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTP 216
NL + + AR E D +G TR T + DA L S G QTP
Sbjct: 142 GFKNLKDGRQYNDLYYAALARSEADWIVGINATRALTTKY-------DAQL-SLGRVQTP 193
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEK 276
T+ R +I FKP+ Y+ L LT+ G + ++ + +K T + V K
Sbjct: 194 TIQLVNTRQQEINQFKPQQYYTLSLTVK--GFDFQLESNQRYT-NKETLE---QIVNNLK 247
Query: 277 HVTVVDVQSSTK-SKTKPQAL-NTVELMRVASSGLGMGPHHAMQIAERLYTQ-GYVSYPR 333
+V +TK K+ PQ+L N +L + +GP + + LY + V+YPR
Sbjct: 248 NVDGKIKSVATKHKKSYPQSLYNLTDLQQDMYRRYKIGPKETLNTLQSLYERHKVVTYPR 307
Query: 334 TETTQYPENFDLVAVLR---QQESSPDWGDHVREVLSNGISKPR---KGKDVGDHPPITP 387
T++ D+V ++ Q + + D R ++S S + V DH I P
Sbjct: 308 TDSNYLTT--DMVDTMKERIQATMATTYKDQARPLMSKTFSSKMSIFNNQKVSDHHAIIP 365
Query: 388 TKLA-TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
T++ + L +LYD IV F+ L Y VA F ++ G
Sbjct: 366 TEVRPVMSDLSNRELKLYDMIVERFLEALMSPHEYDAITVTLEVAGHTFVLKENVTTVLG 425
Query: 447 FTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
F + ++ P F GD + I + E +TTPP+Y E L+ ME
Sbjct: 426 FKSIRQGESITEMQQP-FSEGDEVKISKTNIREHETTPPEYFNEGSLLKAME 476
>sp|Q7A075|TOP3_STAAW DNA topoisomerase 3 OS=Staphylococcus aureus (strain MW2) GN=topB
PE=3 SV=1
Length = 711
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 107/418 (25%), Positives = 171/418 (40%), Gaps = 50/418 (11%)
Query: 99 FLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKA 158
L N+ KD +++ D +EGE + +++ V ++ K + R S++T K I+
Sbjct: 91 ILDNKVKD---IIIATDAGREGELVARLILDKVGNK------KPIRRLWISSVTKKAIQQ 141
Query: 159 AMWNLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTP 216
NL + + AR E D +G TR T + DA L S G QTP
Sbjct: 142 GFKNLKDGRQYNDLYYAALARSEADWIVGINATRALTTKY-------DAQL-SLGRVQTP 193
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEK 276
T+ R +I FKP+ Y+ L LT+ +G F + + E+
Sbjct: 194 TIQLVNTRQQEINQFKPQQYFTLSLTV------------KGFDFQLESNQRYTNKETLEQ 241
Query: 277 HVT-VVDVQSSTKS------KTKPQAL-NTVELMRVASSGLGMGPHHAMQIAERLYTQ-G 327
V + +V KS K+ PQ+L N +L + +GP + + LY +
Sbjct: 242 MVNNLKNVDGKIKSVATKHKKSYPQSLYNLTDLQQDMYRRYKIGPKETLNTLQSLYERHK 301
Query: 328 YVSYPRTETTQYPENFDLVAVLR---QQESSPDWGDHVREVLSNGISKPR---KGKDVGD 381
V+YPRT++ D+V ++ Q + + D R ++S S + V D
Sbjct: 302 VVTYPRTDSNYLTT--DMVDTMKERIQATMATTYKDQARPLMSKTFSSKMSIFNNQKVSD 359
Query: 382 HPPITPTKLA-TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
H I PT++ + L +LYD IV F+ L Y VA F ++
Sbjct: 360 HHAIIPTEVRPVMSDLSNRELKLYDMIVERFLEALMPPHEYDAITVTLEVAGHTFVLKEN 419
Query: 441 YLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
GF + ++ P F GD + I + E +TTPP+Y E L+ ME
Sbjct: 420 VTTVLGFKSIRQGESITEMQQP-FSEGDEVKISKTNIREHETTPPEYFNEGSLLKAME 476
>sp|Q6G767|TOP3_STAAS DNA topoisomerase 3 OS=Staphylococcus aureus (strain MSSA476)
GN=topB PE=3 SV=1
Length = 711
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 107/418 (25%), Positives = 171/418 (40%), Gaps = 50/418 (11%)
Query: 99 FLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKA 158
L N+ KD +++ D +EGE + +++ V ++ K + R S++T K I+
Sbjct: 91 ILDNKVKD---IIIATDAGREGELVARLILDKVGNK------KPIRRLWISSVTKKAIQQ 141
Query: 159 AMWNLVKPNIFEA--RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTP 216
NL + + AR E D +G TR T + DA L S G QTP
Sbjct: 142 GFKNLKDGRQYNDLYYAALARSEADWIVGINATRALTTKY-------DAQL-SLGRVQTP 193
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEK 276
T+ R +I FKP+ Y+ L LT+ +G F + + E+
Sbjct: 194 TIQLVNTRQQEINQFKPQQYFTLSLTV------------KGFDFQLESNQRYTNKETLEQ 241
Query: 277 HVT-VVDVQSSTKS------KTKPQAL-NTVELMRVASSGLGMGPHHAMQIAERLYTQ-G 327
V + +V KS K+ PQ+L N +L + +GP + + LY +
Sbjct: 242 MVNNLKNVDGKIKSVATKHKKSYPQSLYNLTDLQQDMYRRYKIGPKETLNTLQSLYERHK 301
Query: 328 YVSYPRTETTQYPENFDLVAVLR---QQESSPDWGDHVREVLSNGISKPR---KGKDVGD 381
V+YPRT++ D+V ++ Q + + D R ++S S + V D
Sbjct: 302 VVTYPRTDSNYLTT--DMVDTMKERIQATMATTYKDQARPLMSKTFSSKMSIFNNQKVSD 359
Query: 382 HPPITPTKLA-TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
H I PT++ + L +LYD IV F+ L Y VA F ++
Sbjct: 360 HHAIIPTEVRPVMSDLSNRELKLYDMIVERFLEALMPPHEYDAITVTLEVAGHTFVLKEN 419
Query: 441 YLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
GF + ++ P F GD + I + E +TTPP+Y E L+ ME
Sbjct: 420 VTTVLGFKSIRQGESITEMQQP-FSEGDEVKISKTNIREHETTPPEYFNEGSLLKAME 476
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215,345,947
Number of Sequences: 539616
Number of extensions: 9033098
Number of successful extensions: 19453
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 19073
Number of HSP's gapped (non-prelim): 148
length of query: 562
length of database: 191,569,459
effective HSP length: 123
effective length of query: 439
effective length of database: 125,196,691
effective search space: 54961347349
effective search space used: 54961347349
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)