Query psy8714
Match_columns 562
No_of_seqs 201 out of 1554
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 17:23:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i7d_A DNA topoisomerase III; 100.0 1E-131 5E-136 1106.0 41.2 531 6-562 1-578 (659)
2 1mw9_X DNA topoisomerase I; de 100.0 1E-126 5E-131 1057.6 46.9 506 6-562 3-550 (592)
3 2gai_A DNA topoisomerase I; zi 100.0 6E-125 2E-129 1050.8 40.9 495 1-562 1-518 (633)
4 4ddu_A Reverse gyrase; topoiso 100.0 2E-113 6E-118 1015.6 41.2 494 6-562 542-1076(1104)
5 1gku_B Reverse gyrase, TOP-RG; 100.0 2E-111 6E-116 997.7 39.3 482 6-562 506-1029(1054)
6 1vdd_A Recombination protein R 94.4 0.018 6.3E-07 55.1 3.0 57 105-166 132-196 (228)
7 2fcj_A Small toprim domain pro 92.8 0.15 5E-06 44.3 5.5 65 96-165 40-106 (119)
8 1tbx_A ORF F-93, hypothetical 90.1 0.3 1E-05 40.1 4.5 55 488-543 23-81 (99)
9 1t6t_1 Putative protein; struc 87.7 0.5 1.7E-05 40.9 4.3 30 104-133 59-88 (118)
10 3vdp_A Recombination protein R 87.0 0.47 1.6E-05 45.1 4.0 54 105-163 148-209 (212)
11 1r7j_A Conserved hypothetical 84.5 0.55 1.9E-05 38.8 2.9 43 500-544 30-72 (95)
12 2qq9_A Diphtheria toxin repres 78.0 1.7 5.9E-05 41.5 4.2 41 501-542 35-75 (226)
13 1mw9_X DNA topoisomerase I; de 77.6 2.9 0.0001 46.0 6.5 110 219-330 392-511 (592)
14 2xvc_A ESCRT-III, SSO0910; cel 76.8 2.2 7.6E-05 31.7 3.4 27 304-330 30-56 (59)
15 3nqo_A MARR-family transcripti 76.3 2.1 7.2E-05 39.4 4.2 52 487-542 57-114 (189)
16 4b8x_A SCO5413, possible MARR- 76.1 1.6 5.5E-05 38.5 3.1 50 489-542 53-108 (147)
17 1on2_A Transcriptional regulat 75.7 1.9 6.5E-05 37.5 3.5 51 488-542 23-73 (142)
18 4aik_A Transcriptional regulat 74.4 1.7 5.9E-05 38.6 2.9 51 488-542 47-103 (151)
19 2hr3_A Probable transcriptiona 73.7 4.4 0.00015 34.9 5.4 51 488-542 51-107 (147)
20 3oop_A LIN2960 protein; protei 73.0 2.4 8.3E-05 36.6 3.5 50 489-542 53-108 (143)
21 2qvo_A Uncharacterized protein 73.0 1.6 5.6E-05 35.5 2.2 50 489-542 32-84 (95)
22 3k0l_A Repressor protein; heli 72.8 3.1 0.00011 36.9 4.3 51 488-542 61-117 (162)
23 3e6m_A MARR family transcripti 72.8 2.5 8.5E-05 37.5 3.6 50 489-542 69-124 (161)
24 3fm5_A Transcriptional regulat 72.4 1.9 6.6E-05 37.6 2.7 51 488-542 55-111 (150)
25 3hsr_A HTH-type transcriptiona 71.6 2.2 7.4E-05 36.9 2.9 51 488-542 51-107 (140)
26 3hrs_A Metalloregulator SCAR; 71.3 2.6 8.9E-05 39.9 3.5 51 488-542 21-71 (214)
27 3eco_A MEPR; mutlidrug efflux 70.4 2.8 9.6E-05 35.9 3.3 52 487-542 47-104 (139)
28 3nrv_A Putative transcriptiona 70.2 2.4 8.1E-05 36.8 2.8 51 488-542 55-111 (148)
29 2vn2_A DNAD, chromosome replic 70.2 4.9 0.00017 34.8 4.8 49 305-353 57-107 (128)
30 2frh_A SARA, staphylococcal ac 70.1 1.5 5.1E-05 37.7 1.4 51 488-542 54-110 (127)
31 2pg4_A Uncharacterized protein 69.9 1.3 4.3E-05 36.0 0.8 52 488-543 31-87 (95)
32 2qww_A Transcriptional regulat 69.5 3.4 0.00012 36.0 3.7 52 488-543 56-115 (154)
33 3kp7_A Transcriptional regulat 68.9 3.5 0.00012 36.0 3.6 51 488-542 52-110 (151)
34 2fbk_A Transcriptional regulat 68.5 4 0.00014 37.0 4.0 54 485-542 84-143 (181)
35 3ech_A MEXR, multidrug resista 68.0 3.2 0.00011 35.8 3.1 51 488-542 52-108 (142)
36 3s2w_A Transcriptional regulat 67.3 3.5 0.00012 36.4 3.3 51 488-542 65-121 (159)
37 3g3z_A NMB1585, transcriptiona 67.2 4 0.00014 35.2 3.6 51 488-542 46-102 (145)
38 3u2r_A Regulatory protein MARR 67.0 3.4 0.00012 36.9 3.2 51 488-542 63-119 (168)
39 4hbl_A Transcriptional regulat 66.5 2.7 9.2E-05 36.8 2.3 50 489-542 57-112 (149)
40 3bja_A Transcriptional regulat 66.4 5.5 0.00019 33.8 4.4 41 501-542 58-104 (139)
41 3f3x_A Transcriptional regulat 66.4 2.6 8.9E-05 36.4 2.2 50 489-542 52-107 (144)
42 3jw4_A Transcriptional regulat 66.1 2.7 9.1E-05 36.6 2.2 52 487-542 57-114 (148)
43 2h09_A Transcriptional regulat 65.5 4.4 0.00015 35.8 3.6 50 489-542 56-105 (155)
44 3boq_A Transcriptional regulat 65.2 4.8 0.00016 35.3 3.8 51 488-542 63-119 (160)
45 3bpv_A Transcriptional regulat 64.9 4.6 0.00016 34.3 3.5 51 488-542 44-100 (138)
46 1fx7_A Iron-dependent represso 64.6 4.3 0.00015 38.7 3.6 47 491-541 28-74 (230)
47 3df8_A Possible HXLR family tr 64.1 3.5 0.00012 34.7 2.5 57 485-544 40-98 (111)
48 1jgs_A Multiple antibiotic res 63.9 4.6 0.00016 34.4 3.3 50 489-542 50-105 (138)
49 2x4h_A Hypothetical protein SS 63.6 4.8 0.00016 34.7 3.4 50 488-542 32-81 (139)
50 3deu_A Transcriptional regulat 63.4 4 0.00014 36.5 2.9 51 488-542 69-125 (166)
51 3cdh_A Transcriptional regulat 62.5 5.2 0.00018 34.9 3.4 51 488-542 58-114 (155)
52 2v79_A DNA replication protein 62.4 6 0.0002 34.8 3.8 51 303-353 55-107 (135)
53 3bj6_A Transcriptional regulat 61.6 5.8 0.0002 34.4 3.6 51 488-542 55-111 (152)
54 1i7d_A DNA topoisomerase III; 61.3 6.3 0.00021 43.9 4.6 138 399-542 198-351 (659)
55 3ri2_A Transcriptional regulat 61.1 9.2 0.00032 32.9 4.7 53 490-542 36-96 (123)
56 3aaf_A Werner syndrome ATP-dep 60.0 8.3 0.00028 33.8 4.3 53 498-550 57-117 (134)
57 2fa5_A Transcriptional regulat 59.8 4.6 0.00016 35.5 2.7 51 488-542 64-120 (162)
58 2eth_A Transcriptional regulat 59.8 4.7 0.00016 35.3 2.7 51 488-542 59-115 (154)
59 2nyx_A Probable transcriptiona 59.5 5.9 0.0002 35.3 3.3 51 488-542 60-116 (168)
60 2p8t_A Hypothetical protein PH 59.3 5.6 0.00019 37.4 3.2 40 501-542 41-80 (200)
61 2bv6_A MGRA, HTH-type transcri 59.0 7 0.00024 33.4 3.6 51 488-542 52-108 (142)
62 2fsw_A PG_0823 protein; alpha- 58.3 2.9 9.8E-05 34.8 0.9 40 504-543 52-97 (107)
63 3f8b_A Transcriptional regulat 58.3 12 0.0004 31.7 4.8 53 490-542 28-92 (116)
64 2rdp_A Putative transcriptiona 57.3 6.5 0.00022 33.9 3.1 51 488-542 57-113 (150)
65 2fbh_A Transcriptional regulat 57.0 7.4 0.00025 33.3 3.4 51 488-542 53-109 (146)
66 2fxa_A Protease production reg 56.8 6.1 0.00021 37.0 3.0 51 489-543 64-120 (207)
67 1lj9_A Transcriptional regulat 56.7 7.3 0.00025 33.3 3.4 51 488-542 44-100 (144)
68 1s3j_A YUSO protein; structura 56.4 6.7 0.00023 34.1 3.1 50 489-542 53-108 (155)
69 2esh_A Conserved hypothetical 56.2 22 0.00074 30.0 6.2 55 488-542 27-93 (118)
70 1p4x_A Staphylococcal accessor 55.8 7.7 0.00026 37.7 3.7 38 505-542 64-107 (250)
71 3tgn_A ADC operon repressor AD 55.8 5 0.00017 34.5 2.1 51 488-542 52-108 (146)
72 3bro_A Transcriptional regulat 55.0 5.6 0.00019 33.9 2.3 52 487-542 50-107 (141)
73 4ddu_A Reverse gyrase; topoiso 54.1 9.4 0.00032 45.2 4.7 55 467-522 795-850 (1104)
74 2gxg_A 146AA long hypothetical 54.0 8.6 0.00029 32.9 3.4 51 488-542 51-107 (146)
75 2wte_A CSA3; antiviral protein 53.9 8.2 0.00028 37.4 3.5 43 501-544 177-220 (244)
76 2pex_A Transcriptional regulat 53.9 6 0.0002 34.4 2.3 51 488-542 62-118 (153)
77 1p4x_A Staphylococcal accessor 53.9 5.4 0.00018 38.8 2.1 52 487-542 174-231 (250)
78 3cjn_A Transcriptional regulat 53.8 8.3 0.00029 33.8 3.3 51 488-542 67-123 (162)
79 1z7u_A Hypothetical protein EF 53.6 6.1 0.00021 33.1 2.2 52 489-543 37-94 (112)
80 1bja_A Transcription regulator 53.4 8.6 0.00029 31.7 3.0 35 507-542 47-81 (95)
81 2fbi_A Probable transcriptiona 52.8 6.2 0.00021 33.6 2.2 41 501-542 61-107 (142)
82 1gku_B Reverse gyrase, TOP-RG; 52.2 11 0.00037 44.4 4.7 53 469-522 755-808 (1054)
83 2a61_A Transcriptional regulat 52.0 7.3 0.00025 33.3 2.6 51 488-542 48-104 (145)
84 2nnn_A Probable transcriptiona 51.7 6.7 0.00023 33.3 2.2 51 488-542 53-109 (140)
85 1yyv_A Putative transcriptiona 51.5 6.8 0.00023 34.0 2.2 40 504-543 62-107 (131)
86 2gai_A DNA topoisomerase I; zi 51.3 11 0.00038 41.7 4.4 110 397-522 166-287 (633)
87 3bdd_A Regulatory protein MARR 50.7 9.4 0.00032 32.4 3.0 50 488-541 46-102 (142)
88 1okr_A MECI, methicillin resis 50.7 5.2 0.00018 33.6 1.3 54 488-542 25-83 (123)
89 3kfw_X Uncharacterized protein 50.5 13 0.00044 36.1 4.3 54 485-540 18-71 (247)
90 2hzt_A Putative HTH-type trans 50.3 4.3 0.00015 33.7 0.7 40 504-543 41-86 (107)
91 4fx0_A Probable transcriptiona 50.1 5.8 0.0002 34.9 1.5 52 487-542 52-108 (148)
92 4esf_A PADR-like transcription 49.4 20 0.00069 30.3 4.9 53 490-542 27-89 (117)
93 3cta_A Riboflavin kinase; stru 48.8 7.2 0.00024 37.1 2.1 42 500-542 37-81 (230)
94 1xma_A Predicted transcription 47.4 14 0.00047 32.7 3.6 53 489-542 56-121 (145)
95 1hsj_A Fusion protein consisti 46.6 5.9 0.0002 41.8 1.2 51 489-543 422-478 (487)
96 1ub9_A Hypothetical protein PH 46.4 10 0.00035 30.2 2.4 40 501-541 41-86 (100)
97 2f2e_A PA1607; transcription f 46.2 6.9 0.00024 34.6 1.4 50 489-542 39-93 (146)
98 1sfx_A Conserved hypothetical 45.5 15 0.00052 29.4 3.4 51 488-542 35-90 (109)
99 3v7q_A Probable ribosomal prot 45.4 35 0.0012 28.0 5.6 74 95-182 26-99 (101)
100 1z91_A Organic hydroperoxide r 45.0 6.8 0.00023 33.7 1.2 41 501-542 65-111 (147)
101 3l09_A Putative transcriptiona 43.3 15 0.00053 36.0 3.5 54 486-540 41-97 (266)
102 3on1_A BH2414 protein; structu 42.5 54 0.0019 26.8 6.4 73 95-181 25-97 (101)
103 4esb_A Transcriptional regulat 42.5 30 0.001 29.1 4.9 53 490-542 25-87 (115)
104 3l7w_A Putative uncharacterize 41.4 16 0.00056 30.2 3.0 50 492-542 27-84 (108)
105 2dql_A PEX protein; circadian 41.3 26 0.0009 29.5 4.3 38 504-541 55-101 (115)
106 2obp_A Putative DNA-binding pr 39.6 23 0.00077 29.2 3.5 53 486-542 35-91 (96)
107 1tbx_A ORF F-93, hypothetical 37.6 44 0.0015 26.6 5.0 37 295-331 22-58 (99)
108 3hhh_A Transcriptional regulat 35.7 40 0.0014 28.4 4.6 52 491-542 30-91 (116)
109 3b73_A PHIH1 repressor-like pr 35.4 25 0.00084 29.7 3.1 37 504-540 42-78 (111)
110 1p6r_A Penicillinase repressor 35.4 41 0.0014 25.9 4.4 39 295-333 23-61 (82)
111 4a5n_A Uncharacterized HTH-typ 34.9 10 0.00036 33.0 0.7 41 504-544 53-99 (131)
112 2qvo_A Uncharacterized protein 34.4 38 0.0013 27.0 4.1 31 302-332 33-63 (95)
113 2heo_A Z-DNA binding protein 1 34.4 34 0.0012 25.8 3.5 36 295-334 25-60 (67)
114 1q1h_A TFE, transcription fact 33.6 34 0.0012 28.0 3.8 29 304-332 38-66 (110)
115 3elk_A Putative transcriptiona 29.7 32 0.0011 29.0 3.0 51 491-542 31-92 (117)
116 2htj_A P fimbrial regulatory p 29.0 40 0.0014 26.0 3.2 32 296-331 15-46 (81)
117 2co5_A Viral protein F93; vira 28.5 47 0.0016 27.3 3.7 52 491-542 28-84 (99)
118 3hrs_A Metalloregulator SCAR; 28.0 43 0.0015 31.3 3.8 40 303-342 24-63 (214)
119 3r0a_A Putative transcriptiona 27.9 44 0.0015 28.2 3.5 35 293-331 39-74 (123)
120 2d1h_A ST1889, 109AA long hypo 27.5 48 0.0016 26.3 3.6 29 305-333 42-70 (109)
121 3v7e_A Ribosome-associated pro 27.3 68 0.0023 25.2 4.3 54 95-162 18-71 (82)
122 2fbi_A Probable transcriptiona 26.9 55 0.0019 27.3 4.0 30 303-332 54-83 (142)
123 1oyi_A Double-stranded RNA-bin 26.6 53 0.0018 26.2 3.5 30 303-332 34-63 (82)
124 4ev0_A Transcription regulator 26.6 46 0.0016 30.0 3.7 32 302-333 166-197 (216)
125 3dv8_A Transcriptional regulat 26.3 48 0.0016 30.0 3.8 32 302-333 172-203 (220)
126 2dk5_A DNA-directed RNA polyme 26.1 61 0.0021 26.1 3.9 29 302-330 39-67 (91)
127 2nnn_A Probable transcriptiona 25.8 59 0.002 27.0 4.1 30 303-332 56-85 (140)
128 2frh_A SARA, staphylococcal ac 25.6 58 0.002 27.3 3.9 31 302-332 56-86 (127)
129 2oz6_A Virulence factor regula 25.2 51 0.0018 29.4 3.7 32 302-333 167-198 (207)
130 3bpv_A Transcriptional regulat 24.9 54 0.0018 27.3 3.6 29 303-331 47-75 (138)
131 3b02_A Transcriptional regulat 24.8 57 0.0019 29.1 3.9 32 302-333 142-173 (195)
132 3cuo_A Uncharacterized HTH-typ 24.5 60 0.0021 25.4 3.6 30 304-333 43-72 (99)
133 1ub9_A Hypothetical protein PH 24.4 71 0.0024 25.0 4.0 28 304-331 35-62 (100)
134 2oqg_A Possible transcriptiona 24.3 29 0.001 28.3 1.7 36 504-539 47-85 (114)
135 2e1n_A PEX, period extender; c 24.1 40 0.0014 29.5 2.6 39 504-542 67-114 (138)
136 1ku9_A Hypothetical protein MJ 23.8 75 0.0026 26.6 4.4 31 303-333 45-75 (152)
137 1sfx_A Conserved hypothetical 23.7 62 0.0021 25.6 3.6 30 303-332 38-67 (109)
138 2nyx_A Probable transcriptiona 23.5 56 0.0019 28.7 3.5 31 303-333 63-93 (168)
139 1jgs_A Multiple antibiotic res 23.3 61 0.0021 27.0 3.6 29 304-332 53-81 (138)
140 2zfw_A PEX; five alpha-helices 23.2 38 0.0013 30.1 2.2 36 504-539 77-121 (148)
141 1sd4_A Penicillinase repressor 23.2 78 0.0027 26.1 4.2 39 295-333 24-62 (126)
142 2p8t_A Hypothetical protein PH 23.2 58 0.002 30.4 3.6 39 303-342 34-72 (200)
143 2hr3_A Probable transcriptiona 23.2 71 0.0024 26.9 4.0 31 303-333 54-84 (147)
144 3hsr_A HTH-type transcriptiona 23.1 61 0.0021 27.3 3.6 31 303-333 54-84 (140)
145 3ryp_A Catabolite gene activat 23.0 61 0.0021 29.0 3.8 32 302-333 170-201 (210)
146 2fbh_A Transcriptional regulat 22.9 62 0.0021 27.2 3.6 30 304-333 57-86 (146)
147 3e97_A Transcriptional regulat 22.9 64 0.0022 29.5 3.9 32 302-333 178-209 (231)
148 3iwz_A CAP-like, catabolite ac 22.7 61 0.0021 29.5 3.8 32 302-333 190-221 (230)
149 2x4h_A Hypothetical protein SS 22.7 66 0.0022 27.1 3.7 31 303-333 35-65 (139)
150 2a61_A Transcriptional regulat 22.6 63 0.0022 27.1 3.6 29 304-332 52-80 (145)
151 3dkw_A DNR protein; CRP-FNR, H 22.4 57 0.002 29.6 3.5 32 302-333 181-212 (227)
152 2pg4_A Uncharacterized protein 22.4 48 0.0016 26.3 2.6 28 303-330 34-62 (95)
153 2zcw_A TTHA1359, transcription 22.3 65 0.0022 28.8 3.8 32 302-333 149-180 (202)
154 3bro_A Transcriptional regulat 22.3 65 0.0022 26.9 3.6 35 295-333 50-84 (141)
155 3bdd_A Regulatory protein MARR 22.1 66 0.0022 26.8 3.6 30 303-332 49-78 (142)
156 2eth_A Transcriptional regulat 22.0 74 0.0025 27.2 4.0 30 303-332 62-91 (154)
157 2gxg_A 146AA long hypothetical 21.7 79 0.0027 26.5 4.0 30 303-332 54-83 (146)
158 3f3x_A Transcriptional regulat 21.7 68 0.0023 27.0 3.6 32 303-334 54-85 (144)
159 3cdh_A Transcriptional regulat 21.2 80 0.0027 26.9 4.0 31 303-333 61-91 (155)
160 3tgn_A ADC operon repressor AD 21.2 70 0.0024 26.9 3.6 31 303-333 55-85 (146)
161 2gau_A Transcriptional regulat 20.9 79 0.0027 28.8 4.2 32 302-333 183-214 (232)
162 3oop_A LIN2960 protein; protei 20.9 72 0.0025 26.8 3.6 30 304-333 56-85 (143)
163 3j21_Z 50S ribosomal protein L 20.8 1.8E+02 0.006 23.5 5.8 41 95-145 22-62 (99)
164 1lj9_A Transcriptional regulat 20.7 73 0.0025 26.7 3.6 30 303-332 47-76 (144)
165 3cuo_A Uncharacterized HTH-typ 20.7 60 0.002 25.5 2.8 50 489-542 40-93 (99)
166 1s3j_A YUSO protein; structura 20.7 71 0.0024 27.2 3.5 30 303-332 55-84 (155)
167 2rdp_A Putative transcriptiona 20.6 73 0.0025 26.9 3.6 30 303-332 60-89 (150)
168 1on2_A Transcriptional regulat 20.6 77 0.0026 26.8 3.7 39 303-341 26-64 (142)
169 2qq9_A Diphtheria toxin repres 20.4 76 0.0026 29.8 3.9 40 303-342 28-67 (226)
170 3kcc_A Catabolite gene activat 20.3 75 0.0026 30.0 3.9 32 302-333 220-251 (260)
171 3bj6_A Transcriptional regulat 20.3 75 0.0025 26.9 3.6 30 303-332 58-87 (152)
172 3vi6_A 60S ribosomal protein L 20.3 2E+02 0.0067 24.5 6.2 55 95-162 34-88 (125)
173 3cjn_A Transcriptional regulat 20.1 74 0.0025 27.4 3.6 30 303-332 70-99 (162)
174 3e6m_A MARR family transcripti 20.1 87 0.003 27.1 4.0 31 304-334 72-102 (161)
No 1
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=100.00 E-value=1.4e-131 Score=1105.99 Aligned_cols=531 Identities=21% Similarity=0.339 Sum_probs=451.4
Q ss_pred eEEEEecccCcCCcchHHhhcccccCCCCceeeeeeeeEc-CCCcEEEEEEeccccccccccc----CCCCCccCCCCCC
Q psy8714 6 KKLVPASEIKLARPSLISLLTPLQRMNGACSVHEWVGPLF-GDLVLFKMTSVCGHIMGLDFTS----KYNNWDKVDPLEL 80 (562)
Q Consensus 6 ~~l~~ae~~~~~~p~~a~~~~~~~g~~~~~~~~~~~g~~~-g~~~~~~Vt~~~GHl~~l~~~~----~y~~W~~~~p~~~ 80 (562)
|+|||||| ||+|+.|++.+|... ..-+||++ |++ |+||||+|||++|.+|+ +|+.|..+++ ++
T Consensus 1 M~LiIaEK-----Ps~Ak~Ia~~L~g~~----~r~~gy~e~g~~--~~Vt~~~GHl~~L~~p~~y~~~~k~W~~~~l-pi 68 (659)
T 1i7d_A 1 MRLFIAEK-----PSLARAIADVLPKPH----RKGDGFIECGNG--QVVTWCIGHLLEQAQPDAYDSRYARWNLADL-PI 68 (659)
T ss_dssp CEEEEESS-----HHHHHHHHTTSCSCC----EEETTEEEETTT--EEEEECSSCSEEECCHHHHCGGGGSCCSTTC-SC
T ss_pred CEEEEEEC-----HHHHHHHHHHhcCCc----ccCCCcEeeCCC--EEEEeccchhhcCCCccccchhccccccCCc-cc
Confidence 68999999 999999999995322 23478999 875 79999999999997654 4668886552 23
Q ss_pred CCCCcccccCCCCCchHHHHHhhcccCCeEEEecCCCccchhHHHHHHHHHhhhcccCCCCcEEEEEecccCHHHHHHHH
Q psy8714 81 FSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAM 160 (562)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~L~~~~~~~d~Ii~AtD~DREGE~I~~~i~~~~~~~~~~~~~~~v~Rl~~sslt~~~I~~A~ 160 (562)
++..........+.++++.|++++++||+||||||||||||+|||||+++++... +.++||+|+|||++|+++|++||
T Consensus 69 ~p~~~~~~v~~~~~~~~~~lk~l~k~ad~iiiAtD~DREGE~I~~~i~~~~~~~~--~~~~~v~R~~fs~iT~~aI~~A~ 146 (659)
T 1i7d_A 69 VPEKWQLQPRPSVTKQLNVIKRFLHEASEIVHAGDPDREGQLLVDEVLDYLQLAP--EKRQQVQRCLINDLNPQAVERAI 146 (659)
T ss_dssp CCSSCCEEECGGGHHHHHHHHHHHHHCSEEEEECCSSHHHHHHHHHHHHHTTCCH--HHHHTCEECCCSCCSHHHHHHHH
T ss_pred ccccceeeecccHHHHHHHHHHHHhcCCeEEEcCCCCCCCCHHHHHHHHHhCccc--cCCCceEEEEEccCCHHHHHHHH
Confidence 2211111111223467888888889999999999999999999999999995200 00579999999999999999999
Q ss_pred HhCCCCh--HhHHHHHHHHHhHHhHhhccccHHhHHHhhcccCCCCCCccccCcccccchhhhhhhhhhhhcccCcceEE
Q psy8714 161 WNLVKPN--IFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238 (562)
Q Consensus 161 ~nl~~~~--~~l~~a~~aR~~~D~liG~nlSR~~t~~~~~~~~~~~~~~lS~GRVQTptL~lIv~Re~eI~~F~p~~y~~ 238 (562)
+||++++ .++++||+||+++|||||||+||++|+.+++... ++.+|+||||||||+|||+||+||++|+|++||+
T Consensus 147 ~nlr~~~~~~~l~~A~~aR~~~D~lvG~n~Sr~lt~~~r~~~~---~~~lS~GRVQTPtL~lIv~Re~eI~~F~p~~yw~ 223 (659)
T 1i7d_A 147 DRLRSNSEFVPLCVSALARARADWLYGINMTRAYTILGRNAGY---QGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFE 223 (659)
T ss_dssp TTCEEGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---CSCCCCCTTHHHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred hCCCCcchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCC---CCceecCccccchHHHHHHHHHHHHhCCCcceEE
Confidence 9999987 6899999999999999999999999998764321 2479999999999999999999999999999999
Q ss_pred EEEEE-eeCCeEEEEEee-----------cccccCHHHHHHHHHHhhhcCceEEEEEEcceeeccCCCCCCHHHHHHHHH
Q psy8714 239 LDLTL-NLNGVAVSVTWS-----------RGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVAS 306 (562)
Q Consensus 239 i~~~~-~~~~~~~~~~~~-----------~~~~~~~~~a~~~~~~~~~~~~~~V~~v~~~~~~~~pP~pf~l~~Lq~~a~ 306 (562)
|.+.+ ..+++.|.+.|. +++++|++.|+.+++.|.+ ..++|++|+.++++++||+||||++||++||
T Consensus 224 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~a~~~~~~~~~-~~~~V~~v~~k~~~~~pP~pf~ts~LQ~~As 302 (659)
T 1i7d_A 224 VKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRISG-QPAIVTSYNDKRESESAPLPFSLSALQIEAA 302 (659)
T ss_dssp EEEEEECTTCCEEEEEECCCGGGTTTBCTTCCBCCHHHHHHHHHHHSS-CEEECCEEEEEEEEECCCCSBCHHHHHHHHH
T ss_pred EEEEEecCCCcEEEEEEEeccccccccccccccCCHHHHHHHHHHhcc-CCeEEEEEEeEEEEecCCCCccHHHHHHHHH
Confidence 99999 556677999993 4589999999999999986 4799999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHhHh-cCceeecCCCCCCCCCcc--cHHHHHHHhcc-CCchhHHHHHHhhCCCCCCCC--CCCCC
Q psy8714 307 SGLGMGPHHAMQIAERLYT-QGYVSYPRTETTQYPENF--DLVAVLRQQES-SPDWGDHVREVLSNGISKPRK--GKDVG 380 (562)
Q Consensus 307 ~~~g~s~~~tl~iaQ~LYE-~glISYPRTds~~l~~~~--~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~ 380 (562)
++|||||++||++||+||| +||||||||||++||+++ ++.++|..+.. .+.+...+ ++. ...+++. +++++
T Consensus 303 ~~lg~sa~~Tm~iAQ~LYE~~glITYpRTDS~~ls~~~~~~~~~~i~~~~~~~~~~~~~~--~~~-~~~~~r~~~~~kv~ 379 (659)
T 1i7d_A 303 KRFGLSAQNVLDICQKLYETHKLITFPRSDCRYLPEEHFAGRHAVMNAISVHAPDLLPQP--VVD-PDIRNRCWDDKKVD 379 (659)
T ss_dssp HHHCCCHHHHHHHHHHHHHTSCCBSCSSCCCCCBCGGGGGGHHHHHHHHHHHSTTTCCCT--TCC-TTCCCTTBCGGGCC
T ss_pred HhcCCCHHHHHHHHHHHHHhCCeEeccCCCCcccCHHHHHHHHHHHHHHhccchhhhhhh--hcc-ccccccccCCCccC
Confidence 9999999999999999999 899999999999999987 67788877642 22222210 000 0123333 34568
Q ss_pred CCCCCccCCCc-ccCCCCHHHHHHHHHHHHHHHhhcccCceEEEEEEEEEECCeEEEEEEEEEeecceeeeeccccc---
Q psy8714 381 DHPPITPTKLA-TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM--- 456 (562)
Q Consensus 381 ~H~AI~PT~~~-~~~~L~~~e~~vY~lI~rr~la~~~~~a~~~~t~v~~~~~~~~F~a~g~~~~~~Gw~~v~~~~~~--- 456 (562)
||||||||... +.. |+++|++||+||+|||||+||+||+|++|+|.+.++++.|+++|++++++||+.||+.++.
T Consensus 380 aH~AI~PT~~~~~~~-Ls~de~klY~LI~rRflA~~~~~a~~~~t~v~~~~~~~~F~a~G~~i~~~Gw~~vy~~~~~~~~ 458 (659)
T 1i7d_A 380 AHHAIIPTARSSAIN-LTENEAKVYNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLLGSKERDEE 458 (659)
T ss_dssp SSCCBCBCSCCSCCC-CCHHHHHHHHHHHHHHHHTTSCCEEEEEEEEEECSTTCCEEECEEEEEECGGGGGSCTTGGGTT
T ss_pred CCCCcCCcCCCCccC-CCHHHHHHHHHHHHHHHHHhCchheEEEEEEEEEECCEEEEEEEEEEecCChhheecccccccc
Confidence 99999999875 334 9999999999999999999999999999999999999999999999999999999975321
Q ss_pred -ccCCCCCCCCCCeeeeeeeEEeeeecCCCCCCCHHHHHHHHHh-----------------cCCCCcCchhHHHHHhhcC
Q psy8714 457 -KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEK-----------------HGIGTDASIPVHINNICQR 518 (562)
Q Consensus 457 -~~~~Lp~l~~G~~~~~~~~~i~e~~TkPP~~~Te~~Li~~Me~-----------------~GIGTpATra~iI~~L~~r 518 (562)
++..||.+++|+.+.+.++.+.+++|+||+||||++||++||+ .|||||||||+||++|++|
T Consensus 459 ~~~~~LP~l~~Ge~~~~~~~~~~e~~T~PP~ryTEasLi~~Me~~~k~v~d~e~~~~lk~~~GIGtpATrA~iIe~L~~R 538 (659)
T 1i7d_A 459 NDGTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKR 538 (659)
T ss_dssp CEECCCCCCCTTCEEEEEEEEEEEEECCCCCCEEHHHHHHHHHTGGGGCCCHHHHHHHHHTTSSSCTTTHHHHHHHHHHT
T ss_pred cccccCCccCCCCEEEEeEeEEeeeecCCCCCCCHHHHHHHHHHhccccCCHHHHHHHhhccCCCccccHHHHHHHHHhC
Confidence 1356999999999999999999999999999999999999994 6999999999999999999
Q ss_pred CeEEEcCCCeeecchhHHHHHHhhhccCccCCChhhHHHHHhhC
Q psy8714 519 NYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQA 562 (562)
Q Consensus 519 ~Yi~~~~~k~l~~T~~G~~li~~l~~~~~~l~~p~~Ta~~E~~L 562 (562)
|||.+ +|+.|+||++|+.|+++|. ..|++|+|||.||.+|
T Consensus 539 ~Yv~~-~~k~l~pT~~G~~l~~~l~---~~l~~p~~Ta~~E~~L 578 (659)
T 1i7d_A 539 GFLTK-KGRYIHSTDAGKALFHSLP---EMATRPDMTAHWESVL 578 (659)
T ss_dssp TSEEE-SSSEEEECHHHHHHHHHSC---HHHHSTHHHHHHHHHH
T ss_pred CcEee-cCCEEeECHHHHHHHHHHH---HHcCCHHHHHHHHHHH
Confidence 99998 6789999999999999864 4599999999999876
No 2
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=100.00 E-value=1.4e-126 Score=1057.63 Aligned_cols=506 Identities=23% Similarity=0.348 Sum_probs=428.2
Q ss_pred eEEEEecccCcCCcchHHhhcccccCCCCceeeeeeeeEcCCCcEEEEEEecccccccccc---------------cCCC
Q psy8714 6 KKLVPASEIKLARPSLISLLTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFT---------------SKYN 70 (562)
Q Consensus 6 ~~l~~ae~~~~~~p~~a~~~~~~~g~~~~~~~~~~~g~~~g~~~~~~Vt~~~GHl~~l~~~---------------~~y~ 70 (562)
|+|||||| ||+|+.|++.+|. .|+||||+|||++|..+ ++|+
T Consensus 3 k~LiIaEk-----Ps~Ak~Ia~~Lg~------------------~~~Vt~~~GHl~~L~~~~~~~~~~~~~~~~~p~~y~ 59 (592)
T 1mw9_X 3 KALVIVES-----PAKAKTINKYLGS------------------DYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKP 59 (592)
T ss_dssp CEEEEESC-----HHHHHHHHTTSCT------------------TEEEEECCSCCEESCC--------------------
T ss_pred ceEEEEEC-----HHHHHHHHHHhCC------------------CcEEEeeccccccCCcccccccccccccccchhhhc
Confidence 68999999 9999999977652 26899999999999653 4554
Q ss_pred C-----Cc----cCCCCCCCCCCcccccCCCCCchHHHHHhhcccCCeEEEecCCCccchhHHHHHHHHHhhhcccCCCC
Q psy8714 71 N-----WD----KVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPK 141 (562)
Q Consensus 71 ~-----W~----~~~p~~~~~~~~~~~~~~~~~~~i~~L~~~~~~~d~Ii~AtD~DREGE~I~~~i~~~~~~~~~~~~~~ 141 (562)
. |. ..+|.+.|.... .....+.++++.|++++++||.||||||||||||+|||||+++|+. .++
T Consensus 60 ~~~~~~~~~~~l~i~p~~~f~~~~--~~~~~k~~~~~~lk~l~k~ad~iiiAtD~DREGE~I~~~i~~~~~~-----~~~ 132 (592)
T 1mw9_X 60 KKDERGALVNRMGVDPWHNWEAHY--EVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLREVIGG-----DDA 132 (592)
T ss_dssp ---CHHHHHHHHTEETTTTTEECC--EECTTCHHHHHHHHHHHHTCSEEEECCCSSHHHHHHHHHHHHHHCS-----CGG
T ss_pred hhhhcccchhcCCcCccccCceeE--EEcccHHHHHHHHHHHHhcCCeEEEcCCCCccccHHHHHHHHHhCC-----CCC
Confidence 2 21 123433231110 1112344688899999999999999999999999999999999953 247
Q ss_pred cEEEEEecccCHHHHHHHHHhCCCChHhHHHHHHHHHhHHhHhhccccHHhHHHhhcccCCCCCCccccCcccccchhhh
Q psy8714 142 TVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFC 221 (562)
Q Consensus 142 ~v~Rl~~sslt~~~I~~A~~nl~~~~~~l~~a~~aR~~~D~liG~nlSR~~t~~~~~~~~~~~~~~lS~GRVQTptL~lI 221 (562)
+|+|+|||++|+++|++||+|+++.+.++++||.||+++|||||||+||++|..++ ..+|+||||||||+||
T Consensus 133 ~v~R~~fs~iT~~aI~~A~~~~~~~~~~l~~A~~aR~~~D~lvG~n~Sr~l~~~~~--------~~lS~GRVQtptL~lI 204 (592)
T 1mw9_X 133 RYSRVVFNEITKNAIRQAFNKPGELNIDRVNAQQARRFMDRVVGYMVSPLLWKKIA--------RGLSAGRVQSVAVRLV 204 (592)
T ss_dssp GEEECCCSSCSHHHHHHHHHSCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCCCTTHHHHHHHH
T ss_pred CeEEEEEccCCHHHHHHHHhCCccccHHHHHHHHHHHHHHHHhhHhhhHHHHhhhc--------cccccCccchhHHHHH
Confidence 89999999999999999999999999999999999999999999999999987542 2599999999999999
Q ss_pred hhhhhhhhcccCcceEEEEEEEee-CCeEEEEEeec-----ccccCHHHHHHHHHHhhhcCceEEEEEEcceeeccCCCC
Q psy8714 222 VERHDKIRTFKPEPYWLLDLTLNL-NGVAVSVTWSR-----GHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQA 295 (562)
Q Consensus 222 v~Re~eI~~F~p~~y~~i~~~~~~-~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~V~~v~~~~~~~~pP~p 295 (562)
|+||+||++|+|++||.|.+.+.. ++..|.+.|.. .++.+++.|+.+++.|.+ +.++|.+|++++++++||+|
T Consensus 205 v~Re~eI~~F~p~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~-~~~~V~~v~~k~~~~~pP~p 283 (592)
T 1mw9_X 205 VEREREIKAFVPEEFWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEK-ARYSVLEREDKPTTSKPGAP 283 (592)
T ss_dssp HHHHHHHHHCCCCEEEEEEEEEECTTCCEEEEEEEEETTEECCCCSHHHHHHHHHHHHH-CCEEEEEEEEEEEEECCCCC
T ss_pred HHHHHHHHhCCCcceEEEEEEEecCCCcEEEEEEEecCCcccccCCHHHHHHHHHHhcC-CCeEEEEEEEEEEeccCCCC
Confidence 999999999999999999999965 45568887742 367899999999999976 47999999999999999999
Q ss_pred CCHHHHHHHHHhhCCCCHHHHHHHHHHhHhcCceeecCCCCCCCCCcc--cHHHHHHHhccCCchhHHHHHHhhCCCCCC
Q psy8714 296 LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF--DLVAVLRQQESSPDWGDHVREVLSNGISKP 373 (562)
Q Consensus 296 f~l~~Lq~~a~~~~g~s~~~tl~iaQ~LYE~glISYPRTds~~l~~~~--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 373 (562)
|+|++||++||++|||||++||++||+|||+||||||||||++||+++ .+...+..+. +. .++.. .+
T Consensus 284 f~ts~LQ~~As~~lg~sa~~tm~iAQ~LYE~glITYpRTDs~~ls~~~~~~~~~~i~~~~-----g~---~~~~~---~~ 352 (592)
T 1mw9_X 284 FITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDNF-----GK---KYLPE---SP 352 (592)
T ss_dssp BCHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTSBCCSCCCCCCCCHHHHHHHHHHHHHHT-----CG---GGSCS---SC
T ss_pred ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhCCeeeccCCCCCccCHHHHHHHHHHHHHhh-----hh---hhccc---CC
Confidence 999999999999999999999999999999999999999999999975 3455554431 11 11221 22
Q ss_pred CCC----CCCCCCCCCccCCCc----ccCCCCHHHHHHHHHHHHHHHhhcccCceEEEEEEEEEECCeEEEEEEEEEeec
Q psy8714 374 RKG----KDVGDHPPITPTKLA----TRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHP 445 (562)
Q Consensus 374 ~~~----~~~~~H~AI~PT~~~----~~~~L~~~e~~vY~lI~rr~la~~~~~a~~~~t~v~~~~~~~~F~a~g~~~~~~ 445 (562)
+.. ++.+||||||||... ....|+++|++||+||+||||||||+||+|++|+|.+.++++.|+++|++++++
T Consensus 353 ~~~~~~~~~~~aH~AI~PT~~~~~~~~l~~Ls~~e~klY~LI~rrflA~~~~~a~~~~t~v~~~~~~~~F~a~g~~i~~~ 432 (592)
T 1mw9_X 353 NQYASKENSQEAREAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFD 432 (592)
T ss_dssp CCCC--------CCCBCBSCTTCCGGGCSSCCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred ccccCCCCCCCCCCCEecccCccCccchhhCCHHHHHHHHHHHHHHHHHhCchhEEEEEEEEEEECCEEEEEEEEEEeeC
Confidence 211 123789999999742 225799999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeccccc--ccCCCCCCCCCCeeeeeeeEEeeeecCCCCCCCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEE
Q psy8714 446 GFTGVMTWSAM--KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV 523 (562)
Q Consensus 446 Gw~~v~~~~~~--~~~~Lp~l~~G~~~~~~~~~i~e~~TkPP~~~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~ 523 (562)
||+.||+.... ++..||.+++|+.+.+.++.+.+++|+||+||||++||++||+.|||||||||+||++|++||||.+
T Consensus 433 Gw~~vy~~~~~~~~~~~LP~l~~G~~~~~~~~~~~~~~T~PP~ryTEasLi~~Me~~GIGtpATrA~iI~~L~~R~Yv~~ 512 (592)
T 1mw9_X 433 GWTKVMPALRKGDEDRILPAVNKGDALTLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRV 512 (592)
T ss_dssp GGGGGSCCC----CCCCCCCCCTTCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHTTCCCTTTHHHHHHHHHHTTSEEE
T ss_pred ChHHhcCccccccccccccccCCCCEeEeeEeEEeeeeccCCCCCCHHHHHHHHHhcCCCchhhHHHHHHHHHhcCceee
Confidence 99999975432 2557999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCeeecchhHHHHHHhhhccCccCCChhhHHHHHhhC
Q psy8714 524 TSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQA 562 (562)
Q Consensus 524 ~~~k~l~~T~~G~~li~~l~~~~~~l~~p~~Ta~~E~~L 562 (562)
+|++|+||++|+.|++.|...++.|++|+|||.||.+|
T Consensus 513 -~~k~l~pT~~G~~l~~~L~~~~~~l~~~~~Ta~~E~~L 550 (592)
T 1mw9_X 513 -ENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENNL 550 (592)
T ss_dssp -ETTEEEECHHHHHHHHHHHHHCHHHHCHHHHHHHHHHH
T ss_pred -cCCEeeecHHHHHHHHHHHHhhhhhCCHHHHHHHHHHH
Confidence 57899999999999999877777899999999999875
No 3
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=100.00 E-value=5.7e-125 Score=1050.77 Aligned_cols=495 Identities=24% Similarity=0.341 Sum_probs=422.4
Q ss_pred CcccceEEEEecccCcCCcchHHhhcccccCCCCceeeeeeeeEcCCCcEEEEEEecccccccccccCCCCCccCCCCCC
Q psy8714 1 MHLRVKKLVPASEIKLARPSLISLLTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLEL 80 (562)
Q Consensus 1 ~~~~~~~l~~ae~~~~~~p~~a~~~~~~~g~~~~~~~~~~~g~~~g~~~~~~Vt~~~GHl~~l~~~~~y~~W~~~~p~~~ 80 (562)
|.-+.|.|||||| ||+|+.|++.+|. + |+|+||+|||++|..|. -.|...+|
T Consensus 1 ~~~~mk~LvIaEk-----Ps~Ak~Ia~~Lg~----------------~--y~Vt~s~GHl~~l~~~~--~~~~~~~~--- 52 (633)
T 2gai_A 1 MAKKVKKYIVVES-----PAKAKTIKSILGN----------------E--YEVFASMGHIIDLPKSK--FGVDLEKD--- 52 (633)
T ss_dssp ------CEEEESC-----HHHHHHHHHHHGG----------------G--SEEEECCSCSEESCSSS--CCEETTTT---
T ss_pred CCCCCcEEEEEeC-----HHHHHHHHHHhCC----------------C--CEEEecccccccCCccC--CCCCcccC---
Confidence 4445578999999 9999999987752 1 57999999999996542 24554332
Q ss_pred CCCCcccccCCCCCchHHHHHhhcccCCeEEEecCCCccchhHHHHHHHHHhhhcccCCCCcEEEEEecccCHHHHHHHH
Q psy8714 81 FSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAM 160 (562)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~L~~~~~~~d~Ii~AtD~DREGE~I~~~i~~~~~~~~~~~~~~~v~Rl~~sslt~~~I~~A~ 160 (562)
|. |.. .....+.++++.|++++++|| ||||||||||||+|||||+++++ ++++|+|+|||++|+++|++||
T Consensus 53 f~-p~~-~~~~~~~~~~~~lk~l~k~ad-iiiAtD~DREGE~I~~~i~~~~~------~~~~v~R~~fs~iT~~aI~~a~ 123 (633)
T 2gai_A 53 FE-PEF-AVIKGKEKVVEKLKDLAKKGE-LLIASDMDREGEAIAWHIARVTN------TLGRKNRIVFSEITPRVIREAV 123 (633)
T ss_dssp SE-ECC-EECTTCHHHHHHHHHHHHHSC-EEECCCSSHHHHHHHHHHHHHHT------CTTSSCBCCCSSCCHHHHHHHH
T ss_pred cC-ceE-EECccHHHHHHHHHHHHhhCC-EEEcCCCCcccCHHHHHHHHHcC------CCCCeEEEEEccCCHHHHHHHH
Confidence 21 111 111234568888999999999 99999999999999999999995 3589999999999999999999
Q ss_pred HhCCCChHhHHHHHHHHHhHHhHhhccccHHhHHHhhcccCCCCCCccccCcccccchhhhhhhhhhhhcccCcceEEEE
Q psy8714 161 WNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 240 (562)
Q Consensus 161 ~nl~~~~~~l~~a~~aR~~~D~liG~nlSR~~t~~~~~~~~~~~~~~lS~GRVQTptL~lIv~Re~eI~~F~p~~y~~i~ 240 (562)
+||++++.++++||.||+++|||||||+||++|+.++ ..+|+||||||||+|||+||+||++|+|++||+|.
T Consensus 124 ~~~~~~~~~l~~A~~aR~~~D~lvG~n~Sr~l~~~~~--------~~lS~GRVQtptL~lIv~Re~eI~~F~p~~y~~i~ 195 (633)
T 2gai_A 124 KNPREIDMKKVRAQLARRILDRIVGYSLSPVLWRNFK--------SNLSAGRVQSATLKLVCDREREILRFVPKKYHRIT 195 (633)
T ss_dssp HSCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------CCCTTHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred hCCCCCcHHHHHHHHHhhHHHHHhhHHHCHHHHHhhh--------cccccCccchHHHHHHHHHHHHHHhCCCcceEEEE
Confidence 9999999999999999999999999999999998653 25999999999999999999999999999999999
Q ss_pred EEEeeCCeEEEEEe--ecccccCHHHHHHHHHHhhhcCceEEEEEEcceeeccCCCCCCHHHHHHHHHhhCCCCHHHHHH
Q psy8714 241 LTLNLNGVAVSVTW--SRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQ 318 (562)
Q Consensus 241 ~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~V~~v~~~~~~~~pP~pf~l~~Lq~~a~~~~g~s~~~tl~ 318 (562)
+.+. + |.+.| ...+++|++.|++++ .| +.++|.+|+.++++++||+||+|++||++||++|||||++||+
T Consensus 196 ~~~~--~--~~a~~~~~~~~~~~~~~a~~~~-~~---~~~~V~~v~~k~~~~~pP~pf~ts~LQ~~As~~lg~sa~~tm~ 267 (633)
T 2gai_A 196 VNFD--G--LTAEIDVKEKKFFDAETLKEIQ-SI---DELVVEEKKVSVKKFAPPEPFKTSTLQQEAYSKLGFSVSKTMM 267 (633)
T ss_dssp EEET--T--EEEEECCSSCCCCCHHHHHHHH-TC---CCEEEEEEEEEEEEECCCCCBCHHHHHHHHHHHHCCCHHHHHH
T ss_pred EEEe--e--EEEEEecCCcccCCHHHHHHHH-hC---CCeEEEEEEEEEEEecCCCCccHHHHHHHHHHHcCCCHHHHHH
Confidence 9984 2 88887 445788999999999 77 4689999999999999999999999999999999999999999
Q ss_pred HHHHhHhc--------CceeecCCCCCCCCCcc--cHHHHHHHhccCCchhHHHHHHhhCCCCCCC---CCCCC-CCCCC
Q psy8714 319 IAERLYTQ--------GYVSYPRTETTQYPENF--DLVAVLRQQESSPDWGDHVREVLSNGISKPR---KGKDV-GDHPP 384 (562)
Q Consensus 319 iaQ~LYE~--------glISYPRTds~~l~~~~--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~H~A 384 (562)
+||+|||+ ||||||||||++||+++ .+.+.|.... +. .++.. .|+ +.+++ +||||
T Consensus 268 iaQ~LYE~~~~~~~~~glITYpRTDs~~ls~~~~~~~~~~i~~~~-----g~---~~~~~---~~r~~~~~~~~~~aH~A 336 (633)
T 2gai_A 268 IAQQLYEGVETKDGHIAFITYMRTDSTRVSDYAKEEARNLITEVF-----GE---EYVGS---KRERRKSNAKIQDAHEA 336 (633)
T ss_dssp HHHHHHHCEECSSSEECCBCCSCCSCCCCCHHHHHHHHHHHHHHT-----CG---GGBC-----------------CCCC
T ss_pred HHHHHhhccccccCccceEEecCCCccccCHHHHHHHHHHHHHHh-----hh---hhccc---CCccccCCCCcCCCCCC
Confidence 99999998 99999999999999976 2455554321 11 11211 122 12344 47999
Q ss_pred CccCCCc-c----cCCCCHHHHHHHHHHHHHHHhhcccCceEEEEEEEEEE--CCeEEEEEEEEEeecceeeeecccccc
Q psy8714 385 ITPTKLA-T----RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSV--ADEMFTMEAKYLLHPGFTGVMTWSAMK 457 (562)
Q Consensus 385 I~PT~~~-~----~~~L~~~e~~vY~lI~rr~la~~~~~a~~~~t~v~~~~--~~~~F~a~g~~~~~~Gw~~v~~~~~~~ 457 (562)
||||... . ...|+++|++||+||+|||||+||+||+|++|+|.+.+ +++.|+++|++++++||+.||.. ++
T Consensus 337 I~PT~~~~~p~~~~~~L~~~e~klY~LI~rrflA~~~~~a~~~~t~v~~~~~~~~~~F~a~g~~i~~~G~~~vy~~--~~ 414 (633)
T 2gai_A 337 IRPTNVFMTPEEAGKYLNSDQKKLYELIWKRFLASQMKPSQYEETRFVLRTKDGKYRFKGTVLKKIFDGYEKVWKT--ER 414 (633)
T ss_dssp BCBSCTTSCHHHHTTTSCHHHHHHHHHHHHHHHHHTBCCEEEEEEEEEEECTTSSCEEEEEEEEEEECGGGGTSCC--CC
T ss_pred cccccccCChhhhhhcCCHHHHHHHHHHHHHHHHHhCchheEEEEEEEEEEeCCCcEEEEEEEEEecCCHHHhhcc--cc
Confidence 9999863 2 14699999999999999999999999999999999999 99999999999999999999942 23
Q ss_pred cCCCCCCCCCCeeeeeeeEEeeeecCCCCCCCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcCCCeeecchhHHH
Q psy8714 458 NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537 (562)
Q Consensus 458 ~~~Lp~l~~G~~~~~~~~~i~e~~TkPP~~~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~~k~l~~T~~G~~ 537 (562)
+..||.+++|+.+.+.++.+.+++|+||+||||++||++||+.|||||||||+||++|++||||.+ +|+.|+||++|+.
T Consensus 415 ~~~LP~l~~G~~~~~~~~~~~~~~T~PP~ryTEasLi~~Me~~GIGtpaT~A~iI~~L~~R~Yv~~-~~k~l~pT~~G~~ 493 (633)
T 2gai_A 415 NTGEFPFEEGESVKPVVVKIEEQETKPKPRYTEGSLVKEMERLGIGRPSTYASTIKLLLNRGYIKK-IRGYLYPTIVGSV 493 (633)
T ss_dssp CBCCCCCCTTCEECCCEEEEEEEECCCCCCCCHHHHHHHHHHHTCCCTTTHHHHHHHHHHTTSEEE-ETTEEEEBHHHHH
T ss_pred cccCCCcCCCCEEEEeEEEEeeeecCCCCCCCHHHHHHHhhccCCCCcccHHHHHHHHhhcCcEEE-cCCEEEEChhHHH
Confidence 557999999999999999999999999999999999999999999999999999999999999998 5789999999999
Q ss_pred HHHhhhccCccCCChhhHHHHHhhC
Q psy8714 538 LVHGYQKIDRELVEPTMRSAYRVQA 562 (562)
Q Consensus 538 li~~l~~~~~~l~~p~~Ta~~E~~L 562 (562)
|+++|...++.|++|+|||.||.+|
T Consensus 494 l~~~l~~~~~~l~~~~~Ta~~E~~L 518 (633)
T 2gai_A 494 VMDYLEKKYSDVVSVSFTAEMEKDL 518 (633)
T ss_dssp HHHHHHHHSTTTTSHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCHHHHHHHHHHH
Confidence 9999988788999999999999875
No 4
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.8e-113 Score=1015.65 Aligned_cols=494 Identities=21% Similarity=0.296 Sum_probs=414.8
Q ss_pred eEEEEecccCcCCcchHHhhcccccCCCC-----ceeeeeeeeEcCCCcEEEEEEecccccccccccCCCCCccCC-C-C
Q psy8714 6 KKLVPASEIKLARPSLISLLTPLQRMNGA-----CSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVD-P-L 78 (562)
Q Consensus 6 ~~l~~ae~~~~~~p~~a~~~~~~~g~~~~-----~~~~~~~g~~~g~~~~~~Vt~~~GHl~~l~~~~~y~~W~~~~-p-~ 78 (562)
+.|||||| ||+|+.|++++|.... +++|+| ..|+++ |+|||+.|||++|..|++|..|...+ + .
T Consensus 542 ~~LvIaEk-----Ps~Ak~ia~~Lg~~~~~~~~~~~~ye~---~~~~~~-~~v~~~~GHl~~l~~~~~~~~~~~~~~~~~ 612 (1104)
T 4ddu_A 542 SLLIIVES-----PTKAETLSRFLGRASSRKERNIIVHEA---VTGEGV-ILFTATRGHVYDLVTKGGIHGVEEENGKFV 612 (1104)
T ss_dssp CEEEEESC-----HHHHHHHHHHHTCCEEEEETTEEEEEE---EETTEE-EEEEECCSCCEEECSSSTBTTBEEETTEEE
T ss_pred CeEEEEEC-----HHHHHHHHHHhCCCccccCCCceeEEE---ecCCce-EEEEEeccccccCCCccccCccccccCCcC
Confidence 57999999 9999999999997632 223333 235543 69999999999999888876554322 1 0
Q ss_pred CCCC----C--------------Cc-ccccCCCCCchHHHHHhhcccCCeEEEecCCCccchhHHHHHHHHHhhhcccCC
Q psy8714 79 ELFS----C--------------PT-EKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININS 139 (562)
Q Consensus 79 ~~~~----~--------------~~-~~~~~~~~~~~i~~L~~~~~~~d~Ii~AtD~DREGE~I~~~i~~~~~~~~~~~~ 139 (562)
+.|. + |. .......+.++++.|++++++||+||||||||||||+|||||+++++. +
T Consensus 613 p~y~~~~~~~~~~~~f~~~~~~~p~~~~~~~~~~~~~~~~lk~~~~~~d~i~~atD~DrEGE~I~~~i~~~~~~-----~ 687 (1104)
T 4ddu_A 613 PVYNSLKRCRDCGYQFTEDRDECPVCSSKNIDDKTETLRALREISLEADEILVATDPDVEGEKISWDVTQYLLP-----S 687 (1104)
T ss_dssp CEEEECEEETTTCCEECSCCSSCTTTCCSCEEEHHHHHHHHHHHTTTCSEEEECCCSSHHHHHHHHHHHHHHTT-----T
T ss_pred ccccccccccchhhhhccccccccccccccCccHHHHHHHHHHHHhcCCEEEECcCCchhHHHHHHHHHHHhcc-----c
Confidence 1111 0 10 000011345688999999999999999999999999999999999963 3
Q ss_pred CCcEEEEEecccCHHHHHHHHHhCCCChHhHHHHHHHHHhHHhHhhccccHHhHHHhhcccCCCCCCccccCcccccchh
Q psy8714 140 PKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219 (562)
Q Consensus 140 ~~~v~Rl~~sslt~~~I~~A~~nl~~~~~~l~~a~~aR~~~D~liG~nlSR~~t~~~~~~~~~~~~~~lS~GRVQTptL~ 219 (562)
+++|+|+|||++|+++|++||+||+++++++++||.||+++|||||||+||++|..++ ++.+|+||||||||+
T Consensus 688 ~~~~~R~~f~~it~~aI~~a~~~~~~~~~~l~~a~~aR~~~D~lvG~~~sr~l~~~~~-------~~~lS~GRVQtptL~ 760 (1104)
T 4ddu_A 688 TRSLRRIEMHEITRYGFKKARESVRFVDFNLVKAQIVRRVQDRWIGFELSGKLQKRFG-------RSNLSAGRVQSTVLG 760 (1104)
T ss_dssp CSCEEECCCSSSSHHHHHHHHHTCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-------CSCCCCCHHHHHHHH
T ss_pred CCCeEEEEEccCCHHHHHHHHhCCCcCchhHHHHHHHHHHHHHHHHHHHhHHHHHhhC-------CcccccCccccHHHH
Confidence 6899999999999999999999999999999999999999999999999999987653 236999999999999
Q ss_pred hhhhhhhhhhcccCcceEEEEEEEeeCCeEEEEEeecccccCHHHHHHHHHHhhhcCceEEEEEEcceeeccCCCCCCHH
Q psy8714 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTV 299 (562)
Q Consensus 220 lIv~Re~eI~~F~p~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~V~~v~~~~~~~~pP~pf~l~ 299 (562)
|||+||+||+ +|++||+|. ...++..|.+.|.+. .+.++|+++++++++++||+||||+
T Consensus 761 liv~Re~ei~--~~~~~~~i~--~~~~~~~~~~~~~~~-----------------~~~~~V~~v~~k~~~~~pp~pf~t~ 819 (1104)
T 4ddu_A 761 WIVEREEEYK--KSEKDFTLL--VLENGVNLEVEGKIA-----------------DDVVTVVELQEAEEEKNPLPPYTTS 819 (1104)
T ss_dssp HHHHHHHTTT--TCCCCEEEE--EETTSCEEEEESCCC-----------------CCEEEEEEEEEEEEEECCCCCBCHH
T ss_pred HHHHHHHHHh--ccCcEEEEE--EecCcEEEEeecccc-----------------CCcEEEEEEEeeeEEecCCCCCCHH
Confidence 9999999999 678999993 334566666666542 2478999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHhHhcCceeecCCCCCCCCCcc--cHHHHHHHhccCCchhHHHHHHhhCCCCCCCCCC
Q psy8714 300 ELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF--DLVAVLRQQESSPDWGDHVREVLSNGISKPRKGK 377 (562)
Q Consensus 300 ~Lq~~a~~~~g~s~~~tl~iaQ~LYE~glISYPRTds~~l~~~~--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (562)
+||++||++|||||++||++||+|||+||||||||||++||++. .+.+.+..+. .....+||.++
T Consensus 820 ~Lq~~a~~~~g~s~~~tm~iaQ~LYe~g~iTYpRTds~~l~~~~~~~~~~~i~~~~-------------~~~~~~~r~~~ 886 (1104)
T 4ddu_A 820 SALSEISQKLRLGVQEVMDILQDLFEKGFITYHRTDSTRISLEGQNVARTYLRKIG-------------KEDIFMGRSWS 886 (1104)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHTTSBSCSCCSCCCCCHHHHHHHHHHHHHHS-------------CGGGBCCCCCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCceeecCCCccccCHHHHHHHHHHHHHhh-------------CccccCCCCCC
Confidence 99999999999999999999999999999999999999999864 2334444332 11123566777
Q ss_pred CCCCCCCCccCCCcc------------cCCCCHHHHHHHHHHHHHHHhhcccCceEEEEEEEEEECCeEEEEEEE-EEee
Q psy8714 378 DVGDHPPITPTKLAT------------RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK-YLLH 444 (562)
Q Consensus 378 ~~~~H~AI~PT~~~~------------~~~L~~~e~~vY~lI~rr~la~~~~~a~~~~t~v~~~~~~~~F~a~g~-~~~~ 444 (562)
+.+||||||||...+ ...|+++|++||+||||||||+||+||+|++|++.+.++++.|+++|+ ++++
T Consensus 887 ~~~aH~aI~Pt~~~~~~~~~~~~~~~~~~~l~~~e~~lY~lI~~rfla~~~~~a~~~~t~v~~~~~~~~f~~~g~~~i~~ 966 (1104)
T 4ddu_A 887 TEGAHEAIRPVKPIDARELEEMIEEGLIADLTKKHLRVYELIFNRFLASQSAAVKVKKQIVTVDVDGKRMGIEQIVEILR 966 (1104)
T ss_dssp SSCSSCCBCBSSSCCHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHHHHHHBCCEEEEEEEEEEESSSCEEEEEEEEEEEE
T ss_pred CCCCCcCcCCCccCChHhhhhhhcccccccCCHHHHHHHHHHHHHHHHHhCCceeEEEEEEEEEECCEEEEEEEEEEEEE
Confidence 779999999997632 136999999999999999999999999999999999999999999997 7899
Q ss_pred cceeeeecccccccCCCCCCCCCCeeeeeeeEEeeeecCCCCCCCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEc
Q psy8714 445 PGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT 524 (562)
Q Consensus 445 ~Gw~~v~~~~~~~~~~Lp~l~~G~~~~~~~~~i~e~~TkPP~~~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~ 524 (562)
+||+.+|+. ..||.+++| .+.+.++ ..++|+||+||||++||++||+.|||||||||+||++|++||||.++
T Consensus 967 ~G~~~v~~~-----~~lp~l~~g-~~~~~~~--~~~~~~~p~~~tea~Li~~me~~GIGtpaT~a~iI~~l~~r~Yv~~~ 1038 (1104)
T 4ddu_A 967 DGWNLFVPL-----TVSPRFEHR-TYKIKEK--KFYKKHTVPLFTQASIVEEMKKRGIGRPSTYAKIVEVLFRRGYVYED 1038 (1104)
T ss_dssp CSGGGTSCC-----CCCCCCCSS-EEEEEEE--EEECCCSSCCBCHHHHHHHHHHHTCSCTTTHHHHHHHHHHTTSEEEC
T ss_pred CCHHHhccc-----ccCCCCCCC-ceEEEEe--eeeecCCCCCCCHHHHHHHHHhcCCCCccchHHHHHHHHhCCeEEEc
Confidence 999999962 469999999 6766554 44888889999999999999999999999999999999999999984
Q ss_pred CCCeeecchhHHHHHHhhhccCccCCChhhHHHHHhhC
Q psy8714 525 SGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQA 562 (562)
Q Consensus 525 ~~k~l~~T~~G~~li~~l~~~~~~l~~p~~Ta~~E~~L 562 (562)
+++.|+||++|+.|++.|...++.|++|+|||.||.+|
T Consensus 1039 ~~~~l~pT~~G~~l~~~l~~~~~~l~~~~~Ta~~E~~l 1076 (1104)
T 4ddu_A 1039 KYKRVRPTRFGVMVYSYLKERYEKYVTEETTRRLEEIM 1076 (1104)
T ss_dssp TTCCEEECHHHHHHHHHHHHHCGGGTCHHHHHHHHHHH
T ss_pred CCCeEeEchHHHHHHHHHHHhchhhcCHHHHHHHHHHH
Confidence 33899999999999999977778999999999999875
No 5
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.8e-111 Score=997.67 Aligned_cols=482 Identities=20% Similarity=0.271 Sum_probs=401.4
Q ss_pred eEEEEecccCcCCcchHHhhcccccCC-----CCceeeeeeeeEcCCCcEEEEEEecccccccccccCC-CCCccCCC-C
Q psy8714 6 KKLVPASEIKLARPSLISLLTPLQRMN-----GACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKY-NNWDKVDP-L 78 (562)
Q Consensus 6 ~~l~~ae~~~~~~p~~a~~~~~~~g~~-----~~~~~~~~~g~~~g~~~~~~Vt~~~GHl~~l~~~~~y-~~W~~~~p-~ 78 (562)
|.|||||| ||+|+.|++++|.. +++++|+| ..|+ ..|+||||.|||++|+.|++| +.|. .++ .
T Consensus 506 ~~LiIaEk-----Ps~ak~ia~~Lg~~~~~~~~~~~~ye~---~~~~-~~~~vt~~~GHl~~l~~~~~~~~~~~-~~~~~ 575 (1054)
T 1gku_B 506 PALFIVES-----PTKARQISRFFGKPSVKVLDGAVVYEI---PMQK-YVLMVTASIGHVVDLITNRGFHGVLV-NGRFV 575 (1054)
T ss_dssp EEEEEESC-----HHHHHHHHGGGEECEEEEETTEEEEEE---ECSS-EEEEEEECCSCSEEECSSSSTTSSCC-SSSCC
T ss_pred CEEEEEEC-----HHHHHHHHHHhCCCcccCCCCceeEEe---ecCC-ceEEEEEeccccccCCCchhhcCccc-ccCcC
Confidence 46999999 99999999999864 22222322 1344 346899999999999988864 4565 331 1
Q ss_pred CCCCCCc------------------c-cccCCCCCchHHHHHhhcccCCeEEEecCCCccchhHHHHHHHHHhhhcccCC
Q psy8714 79 ELFSCPT------------------E-KREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININS 139 (562)
Q Consensus 79 ~~~~~~~------------------~-~~~~~~~~~~i~~L~~~~~~~d~Ii~AtD~DREGE~I~~~i~~~~~~~~~~~~ 139 (562)
+.++... . .....++.++++.|++++++||.||||||||||||+|||||+++++ +
T Consensus 576 P~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~l~~~~d~ii~atD~DrEGE~I~~~i~~~~~------~ 649 (1054)
T 1gku_B 576 PVYASIKRCRDCGYQFTEDRESCPKCGSENVDNSRSRIEALRKLAHDAEFVIVGTDPDTEGEKIAWDLKNLLS------G 649 (1054)
T ss_dssp CEEEECC------------------------CCHHHHHHHHHHHHHHHSEEEECCCSSHHHHHHHHHHHHHHT------T
T ss_pred CcccccccccchhhhcccccccccccccccCccHHHHHHHHHHHHhcCCEEEECCCCChhhhHHHHHHHHHhC------C
Confidence 2222110 0 0011234578889999999999999999999999999999999993 4
Q ss_pred CCcEEEEEecccCHHHHHHHHHhCCCChHhHHHHHHHHHhHHhHhhccccHHhHHHhhcccCCCCCCccccCcccccchh
Q psy8714 140 PKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219 (562)
Q Consensus 140 ~~~v~Rl~~sslt~~~I~~A~~nl~~~~~~l~~a~~aR~~~D~liG~nlSR~~t~~~~~~~~~~~~~~lS~GRVQTptL~ 219 (562)
+++|+|+|||++|+++|++||+||++++.++++||.||+++|||||||+||++|..+. ++.+|+||||||||+
T Consensus 650 ~~~~~R~~~~~it~~aI~~a~~~~~~~~~~l~~a~~aR~~~D~lvG~~~sr~l~~~~~-------~~~lS~GRVQtptL~ 722 (1054)
T 1gku_B 650 CGAVKRAEFHEVTRRAILEALESLRDVDENLVKAQVVRRIEDRWIGFVLSQKLWERFN-------NRNLSAGRAQTLVLG 722 (1054)
T ss_dssp SSEEEECCCSBCSHHHHHHHHTSCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-------CSSCCCCTTHHHHHH
T ss_pred CCCeEEEEEccCCHHHHHHHHhCCCCCcHhHHHHHHhHHHHHHHHHHHhCHHHHHhcc-------CceeeeccccchHHH
Confidence 6899999999999999999999999999999999999999999999999999986542 246999999999999
Q ss_pred hhhhhhhhhhcccCcceEEEEEEEeeCCeEEEEEeecccccCHHHHHHHHHHhhhcCceEEEEEEcceeeccCCCCCCHH
Q psy8714 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTV 299 (562)
Q Consensus 220 lIv~Re~eI~~F~p~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~V~~v~~~~~~~~pP~pf~l~ 299 (562)
|||+||+|| +|++||.+. +|..|.+.|.+. .+ .++|++|++++++++||+||||+
T Consensus 723 ~iv~Re~ei---~~~~~~~~~-----~~~~~~~~~~~~-------------~~----~~~V~~v~~k~~~~~pp~pf~~~ 777 (1054)
T 1gku_B 723 WIIDRFQES---RERRKIAIV-----RDFDLVLEHDEE-------------EF----DLTIKLVEEREELRTPLPPYTTE 777 (1054)
T ss_dssp HHHHHHTGG---GSEEEEEEE-----TTTTEEESCCCS-------------EE----EEEEEEEEEEEEEECCCCCBCHH
T ss_pred HHHHHHHhh---CCcCcEEEE-----CCEEEEeccccc-------------ce----EEEEEEEEeeEEEecCCCCCCHH
Confidence 999999999 688999874 455566544321 11 57999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHhHhcCceeecCCCCCCCCCcccHHHHHHHhccCCchhHHHHHHhhCCCCCCCCCCCC
Q psy8714 300 ELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDV 379 (562)
Q Consensus 300 ~Lq~~a~~~~g~s~~~tl~iaQ~LYE~glISYPRTds~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (562)
+||++||++|||||++||++||+|||+||||||||||++||++. .+.+. .++..+. +||.+++.
T Consensus 778 ~Lq~~a~~~~g~s~~~tm~iaQ~LYe~g~iTYpRTds~~l~~~~--~~~~~-------------~~~~~~~-~~r~~~~~ 841 (1054)
T 1gku_B 778 TMLSDANRILKFSVKQTMQIAQELFENGLITYHRTDSTRVSDVG--QRIAK-------------EYLGDDF-VGREWGES 841 (1054)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHTTSBBCSSCCCCCCCHHH--HHHHH-------------HHHTTSB-CCCCSCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCceeecCCCccccCHHH--HHHHH-------------HHhhhhh-ccccCCCC
Confidence 99999999999999999999999999999999999999999864 11111 2222223 56766666
Q ss_pred CCCCCCccCCCccc--------------CCCCHHHHHHHHHHHHHHHhhcccCceEEEEEEEEEECCeEEEEE-EEEEee
Q psy8714 380 GDHPPITPTKLATR--------------TQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME-AKYLLH 444 (562)
Q Consensus 380 ~~H~AI~PT~~~~~--------------~~L~~~e~~vY~lI~rr~la~~~~~a~~~~t~v~~~~~~~~F~a~-g~~~~~ 444 (562)
+||||||||...+. ..|+++|++||+||+|||||+||+||+|++|++.+.++++.|+++ |.++++
T Consensus 842 ~aH~aI~Pt~~~~~~~~~~~~~~~~~~~~~l~~~e~~lY~lI~~rfla~~~~~a~~~~t~v~~~~~~~~f~~~~~~~~~~ 921 (1054)
T 1gku_B 842 GAHECIRPTRPLTRDDVQRLIQEGVLVVEGLRWEHFALYDLIFRRFMASQCRPFKVVVKKYSIEFDGKTAEEERIVRAEG 921 (1054)
T ss_dssp CSCCCBCBSSSCCHHHHHHHHHHTCSCCSSCCHHHHHHHHHHHHHHHHTTBCCEEEEEEEEEEEETTEEEEECCEEEEES
T ss_pred CCCCCCCCCCCCChHHHhhhhhcccccccCCCHHHHHHHHHHHHHHHHHhCcceEEEEEEEEEEeCCEEEEEEeeEEEEe
Confidence 89999999986321 269999999999999999999999999999999999999999999 578999
Q ss_pred cceeeeecccccccCCCCCCCCCCeeeeeeeEEeeeecCCC-CCCCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEE
Q psy8714 445 PGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPP-DYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTV 523 (562)
Q Consensus 445 ~Gw~~v~~~~~~~~~~Lp~l~~G~~~~~~~~~i~e~~TkPP-~~~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~ 523 (562)
+||+.+|+++ .+|.+++|+ +.+. .+++|+|| +||||++||++||+.|||||||||+||++|++||||..
T Consensus 922 ~G~~~v~~~~-----~~~~l~~g~-~~~~----~~~~t~pp~~~~tea~Li~~Me~~GIGtpaT~a~iI~~l~~r~Yv~~ 991 (1054)
T 1gku_B 922 RAYELYRAVW-----VKNELPTGT-FRVK----AEVKSVPKVLPFTQSEIIQMMKERGIGRPSTYATIVDRLFMRNYVVE 991 (1054)
T ss_dssp HHHHHSCCSC-----CCCCCCCEE-EEEE----BCCEEEESSCCBCHHHHHHHHHHHTCCCTTTHHHHHHHHHHTTSEEE
T ss_pred CCceEEeccc-----cCCCCCCCc-eEEe----eeeeeCCCCCCCCHHHHHHhhhcCCCCCcccHHHHHHHHHhCCchhh
Confidence 9999999643 378899995 5443 68999998 79999999999999999999999999999999999987
Q ss_pred cCCCeeecchhHHHHHHhhhccCccCCChhhHHHHHhhC
Q psy8714 524 TSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQA 562 (562)
Q Consensus 524 ~~~k~l~~T~~G~~li~~l~~~~~~l~~p~~Ta~~E~~L 562 (562)
++ ++|+||++|+.|+++|...++.|++|+|||.||.+|
T Consensus 992 ~~-~~l~pT~~G~~l~~~l~~~~~~l~~~~~Ta~~E~~l 1029 (1054)
T 1gku_B 992 KY-GRMIPTKLGIDVFRFLVRRYAKFVSEDRTRDLESRM 1029 (1054)
T ss_dssp ET-TEEEECHHHHHHHHHHHHSCCGGGSHHHHHHHHHHH
T ss_pred cC-CEEeEchHHHHHHHHHHHhhhhhCCHHHHHHHHHHH
Confidence 44 469999999999999987778899999999999875
No 6
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=94.44 E-value=0.018 Score=55.13 Aligned_cols=57 Identities=9% Similarity=0.050 Sum_probs=45.4
Q ss_pred ccCCeEEEecCCCccchhHHHHHHHHHhhhcccCCCCcEEEEEe--------cccCHHHHHHHHHhCCCC
Q psy8714 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF--------SAITDKDIKAAMWNLVKP 166 (562)
Q Consensus 105 ~~~d~Ii~AtD~DREGE~I~~~i~~~~~~~~~~~~~~~v~Rl~~--------sslt~~~I~~A~~nl~~~ 166 (562)
..+++||+||+|+-|||..++.|.+.++.. ..+|.|+=. -=++.-.+.+||.+-++.
T Consensus 132 ~~V~EVIlAtnpTvEGEaTA~YI~~~Lk~~-----~vkVTRiA~GiPvGgeLEY~De~TL~~Al~~R~~~ 196 (228)
T 1vdd_A 132 GQGMEVILATGTTVEGDATALYLQRLLEPL-----GAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQTV 196 (228)
T ss_dssp CTTCEEEECCCSSHHHHHHHHHHHHHHTTS-----SCEEEECCBCBCTTCCGGGSCHHHHHHHHHTCEEE
T ss_pred CCCCEEEEeCCCCchHHHHHHHHHHHHHHc-----CCCEEEecccCCCCcceeeccHHHHHHHHHcCccc
Confidence 578999999999999999999999999643 567888742 335777888888876543
No 7
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=92.78 E-value=0.15 Score=44.33 Aligned_cols=65 Identities=14% Similarity=0.007 Sum_probs=45.5
Q ss_pred hHHHHHhhcccCCeEEEecCCCccchhHHHHHHHHHhhhcccCC--CCcEEEEEecccCHHHHHHHHHhCCC
Q psy8714 96 LPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININS--PKTVWRARFSAITDKDIKAAMWNLVK 165 (562)
Q Consensus 96 ~i~~L~~~~~~~d~Ii~AtD~DREGE~I~~~i~~~~~~~~~~~~--~~~v~Rl~~sslt~~~I~~A~~nl~~ 165 (562)
.+..|+.+. +-..||+.||||+-||.|-..|.+++... ...+ +.+. =+..+++++|++|+.+...
T Consensus 40 ~l~~I~~~~-~~r~VIi~TD~D~~GekIRk~i~~~lp~~-~hafi~r~~~---gVE~a~~~~I~~aL~~~~~ 106 (119)
T 2fcj_A 40 RLEELADEL-EGYDVYLLADADEAGEKLRRQFRRMFPEA-EHLYIDRAYR---EVAAAPIWHLAQVLLRARF 106 (119)
T ss_dssp HHHHHHHHT-TTSEEEEECCSSHHHHHHHHHHHHHCTTS-EEECCCTTTC---STTTSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHh-cCCCEEEEECCCccHHHHHHHHHHHCCCC-cEEeccCCcc---CcccCCHHHHHHHHHhccc
Confidence 344555543 35689999999999999999998887432 0000 1111 3568899999999998764
No 8
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=90.07 E-value=0.3 Score=40.13 Aligned_cols=55 Identities=15% Similarity=0.197 Sum_probs=43.2
Q ss_pred CCHHHHHHHH-HhcCCCCcCchhHHHHHhhcCCeEEEc---CCCeeecchhHHHHHHhhh
Q psy8714 488 LTESELISLM-EKHGIGTDASIPVHINNICQRNYVTVT---SGRRLVPTSLGIVLVHGYQ 543 (562)
Q Consensus 488 ~Te~~Li~~M-e~~GIGTpATra~iI~~L~~r~Yi~~~---~~k~l~~T~~G~~li~~l~ 543 (562)
.|..+|.+.| +..|+ +++|-..+|..|.++|||.+. ..+.+.+|+.|+.+++.+.
T Consensus 23 ~~~~el~~~la~~l~i-s~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~~~ 81 (99)
T 1tbx_A 23 IATYDLYKKVNAEFPM-STATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAISLK 81 (99)
T ss_dssp CBHHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHHHHH
Confidence 5677776666 55576 678889999999999999862 2346999999999987653
No 9
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=87.71 E-value=0.5 Score=40.89 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=26.1
Q ss_pred cccCCeEEEecCCCccchhHHHHHHHHHhh
Q psy8714 104 AKDCEFLVLWLDCDKEGENICFEVMEAVRH 133 (562)
Q Consensus 104 ~~~~d~Ii~AtD~DREGE~I~~~i~~~~~~ 133 (562)
.+..+.||+.||||+.||.|...+.+++..
T Consensus 59 ~~~~~~VIIltD~D~aGe~ir~~i~~~l~~ 88 (118)
T 1t6t_1 59 EGKWEKVILLFDLDTHGERINQKMKELLSS 88 (118)
T ss_dssp TTTCSEEEECCCSSHHHHHHHHHHHHHHHH
T ss_pred HhCCCEEEEEECCChhHHHHHHHHHHhcCc
Confidence 345667999999999999999999999864
No 10
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=87.00 E-value=0.47 Score=45.06 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=41.2
Q ss_pred ccCCeEEEecCCCccchhHHHHHHHHHhhhcccCCCCcEEEEEe--------cccCHHHHHHHHHhC
Q psy8714 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARF--------SAITDKDIKAAMWNL 163 (562)
Q Consensus 105 ~~~d~Ii~AtD~DREGE~I~~~i~~~~~~~~~~~~~~~v~Rl~~--------sslt~~~I~~A~~nl 163 (562)
.++++||+||+|.-|||.-+..|.+.++.. ..+|.|+=. -=+++-.+.+||.+-
T Consensus 148 ~~v~EVIlAtnpTvEGeaTa~Yi~~~Lk~~-----~vkvTRiA~GiPvGgeLEY~D~~TL~~Al~~R 209 (212)
T 3vdp_A 148 GSVKEVILATNPDIEGEATAMYIAKLLKPF-----GVKVTRIAHGIPVGGDLEYTDVVTLSKALEGR 209 (212)
T ss_dssp SCCSEEEECCCSSHHHHHHHHHHHHHHTTT-----TCEEEECCBSBCTTCCGGGSCHHHHHHHHHTC
T ss_pred CCCcEEEEECCCCccHHHHHHHHHHHhhhc-----CCCeeeccccCcCCcchhhccHHHHHHHHHhC
Confidence 468999999999999999999999999643 467777632 234566677777654
No 11
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=84.52 E-value=0.55 Score=38.84 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=33.4
Q ss_pred cCCCCcCchhHHHHHhhcCCeEEEcCCCeeecchhHHHHHHhhhc
Q psy8714 500 HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQK 544 (562)
Q Consensus 500 ~GIGTpATra~iI~~L~~r~Yi~~~~~k~l~~T~~G~~li~~l~~ 544 (562)
.|+. +++-...++.|.+.|||+.. ...+..|++|+.+++.++.
T Consensus 30 ~~ls-~~~~~~~l~~L~~~GLI~~~-~~~~~LT~kG~~~l~~l~~ 72 (95)
T 1r7j_A 30 ANLS-YALTGRYIKMLMDLEIIRQE-GKQYMLTKKGEELLEDIRK 72 (95)
T ss_dssp HTCC-HHHHHHHHHHHHHTTSEEEE-TTEEEECHHHHHHHHHHHH
T ss_pred hCcC-HHHHHHHHHHHHHCCCeEEE-CCeeEEChhHHHHHHHHHH
Confidence 3443 44455789999999999984 4479999999999887754
No 12
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=78.03 E-value=1.7 Score=41.52 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=34.2
Q ss_pred CCCCcCchhHHHHHhhcCCeEEEcCCCeeecchhHHHHHHhh
Q psy8714 501 GIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 501 GIGTpATra~iI~~L~~r~Yi~~~~~k~l~~T~~G~~li~~l 542 (562)
|+ +++|-..+|.+|.++|||.+...+.+.+|+.|+.+...+
T Consensus 35 ~v-s~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~~~ 75 (226)
T 2qq9_A 35 EQ-SGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAV 75 (226)
T ss_dssp TC-CHHHHHHHHHHHHHTTSEEECTTSBEEECHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHCCCEEEeCCCCeEECHHHHHHHHHH
Confidence 45 578888899999999999986556799999999876543
No 13
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=77.65 E-value=2.9 Score=46.01 Aligned_cols=110 Identities=17% Similarity=0.294 Sum_probs=71.6
Q ss_pred hhhhhhhhhhhcccCcceEEEEEEEeeCCeEEEEEee----cc--ccc--CHH-HHHHHHHHhhhcCceEEEEEEcceee
Q psy8714 219 GFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWS----RG--HIF--DKS-TCNVFFKAVEKEKHVTVVDVQSSTKS 289 (562)
Q Consensus 219 ~lIv~Re~eI~~F~p~~y~~i~~~~~~~~~~~~~~~~----~~--~~~--~~~-~a~~~~~~~~~~~~~~V~~v~~~~~~ 289 (562)
.||+.|..+.. ..|..|-+..+.+..++..|.+.-. .| .++ +.. ..+..+-.+.....+.+.+++.+++.
T Consensus 392 ~LI~rrflA~~-~~~a~~~~t~v~~~~~~~~F~a~g~~i~~~Gw~~vy~~~~~~~~~~~LP~l~~G~~~~~~~~~~~~~~ 470 (592)
T 1mw9_X 392 QLIWRQFVACQ-MTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRILPAVNKGDALTLVELTPAQHF 470 (592)
T ss_dssp HHHHHHHHHHT-SCCEEEEEEEEEEEETTEEEEEEEEEEEECGGGGGSCCC----CCCCCCCCCTTCEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHh-CchhEEEEEEEEEEECCEEEEEEEEEEeeCChHHhcCccccccccccccccCCCCEeEeeEeEEeeee
Confidence 57777776652 4566666777888777777876532 11 121 111 00111112222345677888888999
Q ss_pred ccCCCCCCHHHHHHHHHhhCCCC-HHHHHHHHHHhHhcCcee
Q psy8714 290 KTKPQALNTVELMRVASSGLGMG-PHHAMQIAERLYTQGYVS 330 (562)
Q Consensus 290 ~~pP~pf~l~~Lq~~a~~~~g~s-~~~tl~iaQ~LYE~glIS 330 (562)
+.||.+|+-++|.+.+- ..|+. |+-=..|.+.|.++|||.
T Consensus 471 T~PP~ryTEasLi~~Me-~~GIGtpATrA~iI~~L~~R~Yv~ 511 (592)
T 1mw9_X 471 TKPPARFSEASLVKELE-KRGIGRPSTYASIISTIQDRGYVR 511 (592)
T ss_dssp CCCCCCCCHHHHHHHHH-HTTCCCTTTHHHHHHHHHHTTSEE
T ss_pred ccCCCCCCHHHHHHHHH-hcCCCchhhHHHHHHHHHhcCcee
Confidence 99999999999999885 45776 444456799999999997
No 14
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=76.79 E-value=2.2 Score=31.70 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=25.0
Q ss_pred HHHhhCCCCHHHHHHHHHHhHhcCcee
Q psy8714 304 VASSGLGMGPHHAMQIAERLYTQGYVS 330 (562)
Q Consensus 304 ~a~~~~g~s~~~tl~iaQ~LYE~glIS 330 (562)
.++++||.+.+++++++.+|=++|+|.
T Consensus 30 ~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 30 HFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 467899999999999999999999996
No 15
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=76.28 E-value=2.1 Score=39.41 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC----C--CeeecchhHHHHHHhh
Q psy8714 487 YLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS----G--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 487 ~~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~----~--k~l~~T~~G~~li~~l 542 (562)
..|.++|-..| |+ +++|-..+|..|.++|||.+.. + ..+.+|+.|+.+++.+
T Consensus 57 ~~t~~eLa~~l---~i-s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~ 114 (189)
T 3nqo_A 57 ETTLNNIARKM---GT-SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTC 114 (189)
T ss_dssp GCCHHHHHHHH---TS-CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHH
T ss_pred CcCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHH
Confidence 45566666655 55 5678889999999999998721 1 3599999999988654
No 16
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=76.06 E-value=1.6 Score=38.52 Aligned_cols=50 Identities=14% Similarity=0.154 Sum_probs=36.8
Q ss_pred CHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC------CCeeecchhHHHHHHhh
Q psy8714 489 TESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS------GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 489 Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~------~k~l~~T~~G~~li~~l 542 (562)
|.++|-+.| |+ +++|-..+|+.|.++|||.+.. .+.+.+|+.|+.+++.+
T Consensus 53 t~~eLa~~l---~~-~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~ 108 (147)
T 4b8x_A 53 PMSKIGERL---MV-HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAA 108 (147)
T ss_dssp EHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHHH
T ss_pred CHHHHHHHH---CC-CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHH
Confidence 344444444 44 5788899999999999998721 13599999999988654
No 17
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=75.66 E-value=1.9 Score=37.51 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcCCCeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~~k~l~~T~~G~~li~~l 542 (562)
.|..+|-+.| |+ +++|-..+|..|.+.|||.+..++.+.+|+.|+.+...+
T Consensus 23 ~~~~ela~~l---~v-s~~tvs~~l~~Le~~Glv~r~~~~~~~LT~~g~~~~~~~ 73 (142)
T 1on2_A 23 ARVSDIAEAL---AV-HPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKRL 73 (142)
T ss_dssp CCHHHHHHHH---TS-CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHh---CC-CHHHHHHHHHHHHHCCCEEEeeCceEEEchhHHHHHHHH
Confidence 3444544443 66 467777899999999999985567899999999877543
No 18
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=74.44 E-value=1.7 Score=38.58 Aligned_cols=51 Identities=14% Similarity=0.264 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEc----CC--CeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT----SG--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~----~~--k~l~~T~~G~~li~~l 542 (562)
.|.++|-+.| |+ +++|-..+|+.|.++|||.+. .+ ..+.+|+.|+.+++.+
T Consensus 47 ~~~~eLa~~l---~~-~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~ 103 (151)
T 4aik_A 47 QSQIQLAKAI---GI-EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQV 103 (151)
T ss_dssp SCHHHHHHHH---TS-CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHH
T ss_pred CcHHHHHHHH---Cc-CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHH
Confidence 3555555555 44 678889999999999999862 12 3599999999988654
No 19
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=73.69 E-value=4.4 Score=34.95 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC------CCeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS------GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~------~k~l~~T~~G~~li~~l 542 (562)
.|...|-+.| |+ +++|-..+|..|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 51 ~~~~~la~~l---~i-~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 107 (147)
T 2hr3_A 51 VTPSELAAAE---RM-RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGN 107 (147)
T ss_dssp BCHHHHHHHT---TC-CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHh---CC-ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHH
Confidence 4566666655 66 6778888999999999998731 23599999999988654
No 20
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=73.04 E-value=2.4 Score=36.58 Aligned_cols=50 Identities=8% Similarity=0.030 Sum_probs=37.4
Q ss_pred CHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC------CCeeecchhHHHHHHhh
Q psy8714 489 TESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS------GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 489 Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~------~k~l~~T~~G~~li~~l 542 (562)
|..+|-+.| |+ +++|-..+|..|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 53 t~~eLa~~l---~~-~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 108 (143)
T 3oop_A 53 SQKEIALWT---KK-DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTEL 108 (143)
T ss_dssp EHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHH
T ss_pred CHHHHHHHH---CC-CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHH
Confidence 444555544 55 5778889999999999998732 23599999999988654
No 21
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=72.98 E-value=1.6 Score=35.46 Aligned_cols=50 Identities=12% Similarity=0.089 Sum_probs=36.2
Q ss_pred CHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEc-CC--CeeecchhHHHHHHhh
Q psy8714 489 TESELISLMEKHGIGTDASIPVHINNICQRNYVTVT-SG--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 489 Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~-~~--k~l~~T~~G~~li~~l 542 (562)
|..+|-+.| |+ +++|-..+|..|.++|||... .+ +.+.+|+.|+.+++.+
T Consensus 32 t~~eLa~~l---~i-~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~~ 84 (95)
T 2qvo_A 32 YIQYIASKV---NS-PHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQI 84 (95)
T ss_dssp EHHHHHHHS---SS-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred CHHHHHHHH---Cc-CHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHHHH
Confidence 444444433 55 568888999999999999432 22 3599999999998665
No 22
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=72.81 E-value=3.1 Score=36.89 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC------CCeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS------GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~------~k~l~~T~~G~~li~~l 542 (562)
.|.++|-+.| |+ +++|-..+|..|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 61 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~ 117 (162)
T 3k0l_A 61 LSNAKLAERS---FI-KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQC 117 (162)
T ss_dssp CCHHHHHHHH---TS-CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHH
Confidence 5666776666 55 6788899999999999999731 13599999999988654
No 23
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=72.81 E-value=2.5 Score=37.51 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=36.8
Q ss_pred CHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC------CCeeecchhHHHHHHhh
Q psy8714 489 TESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS------GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 489 Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~------~k~l~~T~~G~~li~~l 542 (562)
|..+|-+.| |+ +++|-..+|+.|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 69 t~~eLa~~l---~~-~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~ 124 (161)
T 3e6m_A 69 TVGQLATLG---VM-EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEI 124 (161)
T ss_dssp EHHHHHHHT---TC-CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHH
T ss_pred CHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHH
Confidence 344444433 44 5678889999999999999732 13699999999988664
No 24
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=72.41 E-value=1.9 Score=37.65 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcCC------CeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSG------RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~~------k~l~~T~~G~~li~~l 542 (562)
.|..+|-+.| |+ +++|-..+|..|.++|||.+... ..+.+|+.|+.+++.+
T Consensus 55 ~t~~eLa~~l---~i-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 111 (150)
T 3fm5_A 55 VNQRGVAATM---GL-DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDA 111 (150)
T ss_dssp CCSHHHHHHH---TC-CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHH
Confidence 4556666655 34 67888899999999999986221 2499999999988654
No 25
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=71.59 E-value=2.2 Score=36.92 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC------CCeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS------GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~------~k~l~~T~~G~~li~~l 542 (562)
.|.++|-+.| |+ +++|-..+|..|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 51 ~t~~eLa~~l---~~-~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 107 (140)
T 3hsr_A 51 LNIKKLGERV---FL-DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPL 107 (140)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHH
T ss_pred cCHHHHHHHH---CC-ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHH
Confidence 3455666655 55 7889999999999999998731 13699999999988654
No 26
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=71.26 E-value=2.6 Score=39.92 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcCCCeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~~k~l~~T~~G~~li~~l 542 (562)
.|..+|-+.| |+ +++|-..+|.+|.++|||.++..+.+.+|+.|+.+.+.+
T Consensus 21 ~~~~~lA~~l---~v-s~~tvs~~l~~Le~~GlV~r~~~~~i~LT~~G~~~~~~~ 71 (214)
T 3hrs_A 21 ITNKEIAQLM---QV-SPPAVTEMMKKLLAEELLIKDKKAGYLLTDLGLKLVSDL 71 (214)
T ss_dssp CCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-ChhHHHHHHHHHHHCCCEEEecCCCeEECHHHHHHHHHH
Confidence 4556666555 43 467888999999999999986657899999999876543
No 27
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=70.43 E-value=2.8 Score=35.91 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC------CCeeecchhHHHHHHhh
Q psy8714 487 YLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS------GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 487 ~~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~------~k~l~~T~~G~~li~~l 542 (562)
..|.++|-+.| |+ +++|-..+|+.|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 47 ~~t~~ela~~l---~~-~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~ 104 (139)
T 3eco_A 47 GLTQNDIAKAL---QR-TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAF 104 (139)
T ss_dssp CEEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHH
T ss_pred CcCHHHHHHHh---CC-CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHH
Confidence 44566666655 44 6788889999999999998731 23589999999988654
No 28
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=70.22 E-value=2.4 Score=36.85 Aligned_cols=51 Identities=14% Similarity=0.308 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC------CCeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS------GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~------~k~l~~T~~G~~li~~l 542 (562)
.|.++|-+.| |+ +++|-..+|..|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 55 ~t~~ela~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~ 111 (148)
T 3nrv_A 55 CSVQKISDIL---GL-DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVA 111 (148)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHH
Confidence 3455555544 55 6778889999999999998631 34699999999988664
No 29
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=70.21 E-value=4.9 Score=34.76 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=32.3
Q ss_pred HHhhCCCCHHHHHHHHHHhHhcCceee--cCCCCCCCCCcccHHHHHHHhc
Q psy8714 305 ASSGLGMGPHHAMQIAERLYTQGYVSY--PRTETTQYPENFDLVAVLRQQE 353 (562)
Q Consensus 305 a~~~~g~s~~~tl~iaQ~LYE~glISY--PRTds~~l~~~~~~~~~l~~l~ 353 (562)
.++++|+|+..+..+.++|-++|||+- .+.|+..+++-+++..++.++.
T Consensus 57 LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Ydl~pl~~kL~ 107 (128)
T 2vn2_A 57 LAERMTVSAAECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLEPLWEKLV 107 (128)
T ss_dssp HHHTSSSCHHHHHHHHHHHHHTTSSEECC----------CEECHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEEeEECCCCcEEEEEehHHHHHHHH
Confidence 455789999999999999999999876 2334455556667777776654
No 30
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=70.12 E-value=1.5 Score=37.68 Aligned_cols=51 Identities=6% Similarity=0.109 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEc------CCCeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT------SGRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~------~~k~l~~T~~G~~li~~l 542 (562)
.|..+|-+.| |+ +++|-..+|+.|.++|||.+. ....+.+|+.|+.+++.+
T Consensus 54 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~ 110 (127)
T 2frh_A 54 YYLKDIINHL---NY-KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESL 110 (127)
T ss_dssp EEHHHHHHHS---SS-HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHH
Confidence 4555555544 44 578889999999999999862 123599999999998764
No 31
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=69.89 E-value=1.3 Score=36.05 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHhcCCCCcCc-hhHHHHHhhcCCeEEEc----CCCeeecchhHHHHHHhhh
Q psy8714 488 LTESELISLMEKHGIGTDAS-IPVHINNICQRNYVTVT----SGRRLVPTSLGIVLVHGYQ 543 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpAT-ra~iI~~L~~r~Yi~~~----~~k~l~~T~~G~~li~~l~ 543 (562)
.|..+|-+.| |+ +++| -..+|+.|.++|||... ..+.+.+|++|+.+++.+.
T Consensus 31 ~t~~eLa~~l---~i-s~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~~~~ 87 (95)
T 2pg4_A 31 PSLAEIVKAS---GV-SEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAECLE 87 (95)
T ss_dssp CCHHHHHHHH---CC-CHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHHHHH
Confidence 5666776666 66 5566 88999999999999842 1245999999999987653
No 32
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=69.51 E-value=3.4 Score=36.05 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEE--c----CC--CeeecchhHHHHHHhhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTV--T----SG--RRLVPTSLGIVLVHGYQ 543 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~--~----~~--k~l~~T~~G~~li~~l~ 543 (562)
.|..+|-+.| |+ +++|-..+|..|.++|||.+ . .+ ..+.+|+.|+.+++.+.
T Consensus 56 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~ 115 (154)
T 2qww_A 56 ISVADLTKRL---II-TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRST 115 (154)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHH
Confidence 4556666655 55 78899999999999999997 2 12 36999999999886653
No 33
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=68.86 E-value=3.5 Score=35.99 Aligned_cols=51 Identities=12% Similarity=0.243 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC------C--CeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS------G--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~------~--k~l~~T~~G~~li~~l 542 (562)
.|.++|-+.| |+ +++|-..+|..|.++|||.+++ + ..+.+|+.|+.+++.+
T Consensus 52 ~t~~eLa~~l---~~-~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~ 110 (151)
T 3kp7_A 52 LTVGQITEKQ---GV-NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKER 110 (151)
T ss_dssp BCHHHHHHHH---CS-CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHH
Confidence 4555665555 44 5788889999999999999621 1 3599999999988654
No 34
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=68.46 E-value=4 Score=37.03 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC----C--CeeecchhHHHHHHhh
Q psy8714 485 PDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS----G--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 485 P~~~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~----~--k~l~~T~~G~~li~~l 542 (562)
|...|..+|-+.| |+ +++|-..+|..|.++|||.+.. + ..+.+|+.|+.+++.+
T Consensus 84 ~~~~t~~eLa~~l---~i-s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~ 143 (181)
T 2fbk_A 84 PEGLRPTELSALA---AI-SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHL 143 (181)
T ss_dssp SSCBCHHHHHHHC---SC-CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHH
T ss_pred CCCCCHHHHHHHH---CC-CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHHH
Confidence 3346777777655 56 7888889999999999998631 1 3599999999988654
No 35
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=68.00 E-value=3.2 Score=35.83 Aligned_cols=51 Identities=24% Similarity=0.163 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC------CCeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS------GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~------~k~l~~T~~G~~li~~l 542 (562)
.|.++|-+.| |+ +++|-..+|..|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 52 ~t~~eLa~~l---~~-~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~ 108 (142)
T 3ech_A 52 LNLQDLGRQM---CR-DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHA 108 (142)
T ss_dssp CCHHHHHHHH---C----CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHH
T ss_pred cCHHHHHHHh---CC-CHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHH
Confidence 4666666655 55 6788889999999999998621 13489999999988654
No 36
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=67.35 E-value=3.5 Score=36.40 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC------CCeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS------GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~------~k~l~~T~~G~~li~~l 542 (562)
.|.++|-+.| |+ +++|-..+|+.|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 65 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~ 121 (159)
T 3s2w_A 65 INQESLSDYL---KI-DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDM 121 (159)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHH
Confidence 3566666665 55 6788899999999999998731 13589999999988654
No 37
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=67.18 E-value=4 Score=35.24 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcCC------CeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSG------RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~~------k~l~~T~~G~~li~~l 542 (562)
.|.++|-+.| |+ +++|-..+|..|.++|||.+... ..+.+|+.|+.+++.+
T Consensus 46 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 102 (145)
T 3g3z_A 46 RTQKHIGEKW---SL-PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPL 102 (145)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHH
Confidence 4555665554 44 57788899999999999997321 3599999999988654
No 38
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=67.03 E-value=3.4 Score=36.86 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC----C--CeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS----G--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~----~--k~l~~T~~G~~li~~l 542 (562)
.|..+|-+.| |+ +++|-..+|..|.++|||.+.. + ..+.+|+.|+.+++.+
T Consensus 63 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~ 119 (168)
T 3u2r_A 63 MATLQIADRL---IS-RAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDL 119 (168)
T ss_dssp EEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-ChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHHH
Confidence 3455555554 44 5678899999999999998631 1 2599999999988665
No 39
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=66.53 E-value=2.7 Score=36.76 Aligned_cols=50 Identities=10% Similarity=0.085 Sum_probs=37.6
Q ss_pred CHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC------CCeeecchhHHHHHHhh
Q psy8714 489 TESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS------GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 489 Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~------~k~l~~T~~G~~li~~l 542 (562)
|..+|-+.| |+ +++|-..+|..|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 57 ~~~eLa~~l---~~-~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 112 (149)
T 4hbl_A 57 TLNSIGRHL---DL-SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAV 112 (149)
T ss_dssp EHHHHHHHH---TC-CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHH
T ss_pred CHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHH
Confidence 555666655 44 6788889999999999998631 13599999999988654
No 40
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=66.41 E-value=5.5 Score=33.78 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=32.5
Q ss_pred CCCCcCchhHHHHHhhcCCeEEEc----CC--CeeecchhHHHHHHhh
Q psy8714 501 GIGTDASIPVHINNICQRNYVTVT----SG--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 501 GIGTpATra~iI~~L~~r~Yi~~~----~~--k~l~~T~~G~~li~~l 542 (562)
|+ +++|-..+|..|.++|||.+. .+ ..+.+|+.|+.+++.+
T Consensus 58 ~~-~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~ 104 (139)
T 3bja_A 58 GC-VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQV 104 (139)
T ss_dssp SS-CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred CC-ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHH
Confidence 55 678888999999999999862 12 2489999999988654
No 41
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=66.41 E-value=2.6 Score=36.44 Aligned_cols=50 Identities=12% Similarity=0.061 Sum_probs=37.7
Q ss_pred CHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcCC------CeeecchhHHHHHHhh
Q psy8714 489 TESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSG------RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 489 Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~~------k~l~~T~~G~~li~~l 542 (562)
|..+|-+.| |+ +++|-..+|..|.++|||.+... ..+.+|+.|+.+++.+
T Consensus 52 ~~~~la~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 107 (144)
T 3f3x_A 52 SMVYLANRY---FV-TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEA 107 (144)
T ss_dssp EHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred CHHHHHHHH---CC-ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHHH
Confidence 556666555 44 57788899999999999987311 2499999999988654
No 42
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=66.14 E-value=2.7 Score=36.61 Aligned_cols=52 Identities=17% Similarity=0.336 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC------CCeeecchhHHHHHHhh
Q psy8714 487 YLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS------GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 487 ~~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~------~k~l~~T~~G~~li~~l 542 (562)
..|..+|-+.| |+ +++|-..+|+.|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 57 ~~t~~eLa~~l---~~-~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~ 114 (148)
T 3jw4_A 57 GIIQKDLAQFF---GR-RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEF 114 (148)
T ss_dssp CCCHHHHHHC----------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHH
T ss_pred CCCHHHHHHHH---CC-ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHH
Confidence 45666665554 55 5778889999999999998631 13589999999988654
No 43
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=65.50 E-value=4.4 Score=35.75 Aligned_cols=50 Identities=10% Similarity=0.213 Sum_probs=38.1
Q ss_pred CHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcCCCeeecchhHHHHHHhh
Q psy8714 489 TESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 489 Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~~k~l~~T~~G~~li~~l 542 (562)
|...|-+. .|+ +++|-..+|..|.+.|||.+..++.+.+|+.|..+++.+
T Consensus 56 ~~~~la~~---l~v-s~~tvs~~l~~Le~~Glv~r~~~~~~~lT~~g~~~~~~~ 105 (155)
T 2h09_A 56 RQVDMAAR---LGV-SQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQES 105 (155)
T ss_dssp CHHHHHHH---HTS-CHHHHHHHHHHHHHTTCEEEETTTEEEECHHHHHHHHHH
T ss_pred CHHHHHHH---hCc-CHHHHHHHHHHHHHCCCEEEecCCceEEChhHHHHHHHH
Confidence 44444433 477 566777899999999999986677899999999887654
No 44
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=65.22 E-value=4.8 Score=35.34 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC------CCeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS------GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~------~k~l~~T~~G~~li~~l 542 (562)
.|..+|-+.| |+ +++|-..+|+.|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 63 ~~~~ela~~l---~i-~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 119 (160)
T 3boq_A 63 LSMGKLSGAL---KV-TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQA 119 (160)
T ss_dssp EEHHHHHHHC---SS-CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHHH
Confidence 4555665554 66 6888999999999999998731 12489999999988654
No 45
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=64.91 E-value=4.6 Score=34.32 Aligned_cols=51 Identities=12% Similarity=0.207 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC----C--CeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS----G--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~----~--k~l~~T~~G~~li~~l 542 (562)
.|..+|-+.| |+ +++|-..+|..|.++|||.+.. + ..+.+|+.|+.+++.+
T Consensus 44 ~~~~ela~~l---~~-s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~ 100 (138)
T 3bpv_A 44 IKQDELATFF---HV-DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLI 100 (138)
T ss_dssp CBHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHH
Confidence 4566666655 55 6778888999999999998721 1 2489999999877543
No 46
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=64.61 E-value=4.3 Score=38.71 Aligned_cols=47 Identities=13% Similarity=0.225 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcCCCeeecchhHHHHHHh
Q psy8714 491 SELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHG 541 (562)
Q Consensus 491 ~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~~k~l~~T~~G~~li~~ 541 (562)
..|-+.| |+ +++|-..+|..|.++|||.+...+.+.+|+.|+.+...
T Consensus 28 ~~La~~l---~v-s~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~~ 74 (230)
T 1fx7_A 28 ARIAERL---DQ-SGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIA 74 (230)
T ss_dssp HHHHHHH---TC-CHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHH
T ss_pred HHHHHHH---Cc-CHHHHHHHHHHHHHCCCEEEeCCccEEECHHHHHHHHH
Confidence 4454444 55 67888899999999999998666789999999998754
No 47
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=64.14 E-value=3.5 Score=34.71 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC--CCeeecchhHHHHHHhhhc
Q psy8714 485 PDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS--GRRLVPTSLGIVLVHGYQK 544 (562)
Q Consensus 485 P~~~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~--~k~l~~T~~G~~li~~l~~ 544 (562)
|.+.|-++|-+.++ || +++|-..++..|.+.|+|.+.. ...+.+|+.|+.+...+..
T Consensus 40 ~~~~~~~eL~~~l~--gi-s~~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G~~l~~~l~~ 98 (111)
T 3df8_A 40 STRQNFNDIRSSIP--GI-SSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNVRNSLMP 98 (111)
T ss_dssp SSCBCHHHHHHTST--TC-CHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcc--CC-CHHHHHHHHHHHHHCCCEEEeecCcEEEEECccHHHHHHHHHH
Confidence 34433455544331 33 6778889999999999999731 3469999999999877643
No 48
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=63.94 E-value=4.6 Score=34.38 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=36.6
Q ss_pred CHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEc----CC--CeeecchhHHHHHHhh
Q psy8714 489 TESELISLMEKHGIGTDASIPVHINNICQRNYVTVT----SG--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 489 Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~----~~--k~l~~T~~G~~li~~l 542 (562)
|..+|.+.| |+ +++|-..+|+.|.++|||.+. .+ ..+.+|+.|+.+++.+
T Consensus 50 ~~~~la~~l---~~-~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 105 (138)
T 1jgs_A 50 TPVELKKVL---SV-DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQC 105 (138)
T ss_dssp CHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHH
T ss_pred CHHHHHHHH---CC-ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHH
Confidence 455555433 55 677888899999999999872 11 2489999999988653
No 49
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=63.61 E-value=4.8 Score=34.65 Aligned_cols=50 Identities=10% Similarity=0.083 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcCCCeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~~k~l~~T~~G~~li~~l 542 (562)
.|..+|-+.+ |+ +++|-..+|.+|.+.|||.+.. +.+.+|+.|+.+...+
T Consensus 32 ~s~~ela~~l---~i-s~~tv~~~l~~Le~~Gli~r~~-~~~~Lt~~g~~~~~~~ 81 (139)
T 2x4h_A 32 AKINRIAKDL---KI-APSSVFEEVSHLEEKGLVKKKE-DGVWITNNGTRSINYL 81 (139)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEET-TEEEECHHHHHHHHHH
T ss_pred cCHHHHHHHh---CC-ChHHHHHHHHHHHHCCCEEecC-CeEEEChhHHHHHHHH
Confidence 3455554444 66 5777888999999999999844 6899999999876543
No 50
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=63.36 E-value=4 Score=36.55 Aligned_cols=51 Identities=14% Similarity=0.269 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC------CCeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS------GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~------~k~l~~T~~G~~li~~l 542 (562)
.|..+|-+.| |+ +++|-..+|..|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 69 ~t~~eLa~~l---~i-~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~ 125 (166)
T 3deu_A 69 QSQIQLAKAI---GI-EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEM 125 (166)
T ss_dssp EEHHHHHHHH---TS-CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHH
Confidence 4566676666 55 6888889999999999999732 13599999999988654
No 51
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=62.46 E-value=5.2 Score=34.94 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC------CCeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS------GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~------~k~l~~T~~G~~li~~l 542 (562)
.|..+|-+.| |+ +++|-..+|..|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 58 ~t~~ela~~l---~i-~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 114 (155)
T 3cdh_A 58 MMITRLAKLS---LM-EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESL 114 (155)
T ss_dssp BCHHHHHHHT---TC-CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHHH
Confidence 4566666555 55 6778888999999999998732 13599999999987654
No 52
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=62.44 E-value=6 Score=34.76 Aligned_cols=51 Identities=8% Similarity=0.128 Sum_probs=38.6
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeec-CCCC-CCCCCcccHHHHHHHhc
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYP-RTET-TQYPENFDLVAVLRQQE 353 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYP-RTds-~~l~~~~~~~~~l~~l~ 353 (562)
...++++|+|+.++.++.|+|-++|||+.- |+|. ....+.+++..++..|.
T Consensus 55 ~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL~ekL~ 107 (135)
T 2v79_A 55 NQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWGKLY 107 (135)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHHHHHHH
Confidence 345678999999999999999999999973 5565 34444456677766653
No 53
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=61.61 E-value=5.8 Score=34.36 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC----C--CeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS----G--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~----~--k~l~~T~~G~~li~~l 542 (562)
.|..+|-+.| |+ +++|-..+|..|.++|||.+.. + ..+.+|+.|+.+++.+
T Consensus 55 ~t~~ela~~l---~~-~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 111 (152)
T 3bj6_A 55 ATAPQLGAAL---QM-KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAI 111 (152)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHHH
Confidence 3455555554 55 5778888999999999999732 1 3689999999987554
No 54
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=61.31 E-value=6.3 Score=43.93 Aligned_cols=138 Identities=13% Similarity=0.139 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHh--hcccCceEEEEEEEE-EECCeEEEEEEEEEeeccee-------eeecccccccCCCCCCCCCC
Q psy8714 399 DAWRLYDYIVRHFIG--TLCGDLVYTQKVAKF-SVADEMFTMEAKYLLHPGFT-------GVMTWSAMKNESIPDFKPGD 468 (562)
Q Consensus 399 ~e~~vY~lI~rr~la--~~~~~a~~~~t~v~~-~~~~~~F~a~g~~~~~~Gw~-------~v~~~~~~~~~~Lp~l~~G~ 468 (562)
-+--.-.||+.|... .|-|. .|=...+.+ ..++..|.+.-.. ..|-+ .++..+.. +..+-.+ .|.
T Consensus 198 VQTPtL~lIv~Re~eI~~F~p~-~yw~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~~~~~a-~~~~~~~-~~~ 272 (659)
T 1i7d_A 198 VQTPVLGLVVRRDEEIENFVAK-DFFEVKAHIVTPADERFTAIWQP--SEACEPYQDEEGRLLHRPLA-EHVVNRI-SGQ 272 (659)
T ss_dssp THHHHHHHHHHHHHHHHTCCCC-EEEEEEEEEECTTCCEEEEEECC--CGGGTTTBCTTCCBCCHHHH-HHHHHHH-SSC
T ss_pred cccchHHHHHHHHHHHHhCCCc-ceEEEEEEEecCCCcEEEEEEEe--ccccccccccccccCCHHHH-HHHHHHh-ccC
Confidence 445556789999876 45544 444455555 3344456664221 11100 11100000 0001112 245
Q ss_pred eeeeeeeEEeeeecCCCCCCCHHHHHHHHH-hcCCCCcCchhHHHHHhhc-CCeEEE-cCCCeeecchh---HHHHHHhh
Q psy8714 469 LIPIQSVKMVERKTTPPDYLTESELISLME-KHGIGTDASIPVHINNICQ-RNYVTV-TSGRRLVPTSL---GIVLVHGY 542 (562)
Q Consensus 469 ~~~~~~~~i~e~~TkPP~~~Te~~Li~~Me-~~GIGTpATra~iI~~L~~-r~Yi~~-~~~k~l~~T~~---G~~li~~l 542 (562)
.+.|.+++.++++..||.+|+-++|...+- +.|++..-|. .|.+.|++ .|||.- ......+|.+. .+.+++.+
T Consensus 273 ~~~V~~v~~k~~~~~pP~pf~ts~LQ~~As~~lg~sa~~Tm-~iAQ~LYE~~glITYpRTDS~~ls~~~~~~~~~~i~~~ 351 (659)
T 1i7d_A 273 PAIVTSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVL-DICQKLYETHKLITFPRSDCRYLPEEHFAGRHAVMNAI 351 (659)
T ss_dssp EEECCEEEEEEEEECCCCSBCHHHHHHHHHHHHCCCHHHHH-HHHHHHHHTSCCBSCSSCCCCCBCGGGGGGHHHHHHHH
T ss_pred CeEEEEEEeEEEEecCCCCccHHHHHHHHHHhcCCCHHHHH-HHHHHHHHhCCeEeccCCCCcccCHHHHHHHHHHHHHH
Confidence 678889999999999999999999999884 5699887777 68999999 799963 12233444443 35566554
No 55
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=61.14 E-value=9.2 Score=32.92 Aligned_cols=53 Identities=11% Similarity=0.204 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCC-CcCchhHHHHHhhcCCeEEEc----C---CCeeecchhHHHHHHhh
Q psy8714 490 ESELISLMEKHGIG-TDASIPVHINNICQRNYVTVT----S---GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 490 e~~Li~~Me~~GIG-TpATra~iI~~L~~r~Yi~~~----~---~k~l~~T~~G~~li~~l 542 (562)
--+|.+.++..|++ .++|--.++.+|.+.|||... . .+.+.+|+.|+...+.+
T Consensus 36 GYei~~~l~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~~ 96 (123)
T 3ri2_A 36 GYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLREV 96 (123)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHHH
Confidence 34577777776544 477888899999999999862 1 13577999999877543
No 56
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=60.02 E-value=8.3 Score=33.77 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=38.9
Q ss_pred HhcCCCCcCchhH---HHHHhhcCCeEEEcCCC-----eeecchhHHHHHHhhhccCccCC
Q psy8714 498 EKHGIGTDASIPV---HINNICQRNYVTVTSGR-----RLVPTSLGIVLVHGYQKIDRELV 550 (562)
Q Consensus 498 e~~GIGTpATra~---iI~~L~~r~Yi~~~~~k-----~l~~T~~G~~li~~l~~~~~~l~ 550 (562)
...|||..-++.. +|..|+..||+....+. .|.+|++|+.++..-...+++|.
T Consensus 57 ~tfGigk~~s~~~w~~lirqLi~~G~L~~~~~~~~~~~~L~Lt~~g~~vL~~~~~~~~~l~ 117 (134)
T 3aaf_A 57 SLFGTGKDQTESWWKAFSRQLITEGFLVEVSRYNKFMKICALTKKGRNWLHKANTESQSLI 117 (134)
T ss_dssp TTTTTTTTSCHHHHHHHHHHHHHTTSEEEEECSSTTCEEEEECHHHHHHHHHHTTSCCCCE
T ss_pred CccCCCCCCCHHHHHHHHHHHHHcCCceeecCcCccCceEEECHHHHHHHhCCccCCCcee
Confidence 3579998777654 69999999999863232 39999999999877543344443
No 57
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=59.81 E-value=4.6 Score=35.49 Aligned_cols=51 Identities=10% Similarity=0.186 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC----C--CeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS----G--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~----~--k~l~~T~~G~~li~~l 542 (562)
.|.++|-+.| |+ +++|-..+|..|.++|||.+.. + ..+.+|+.|+.+++.+
T Consensus 64 ~t~~ela~~l---~i-s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 120 (162)
T 2fa5_A 64 SSASEVSDRT---AM-DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETV 120 (162)
T ss_dssp CCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHH
Confidence 4666676665 55 6788889999999999998632 1 3589999999988554
No 58
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=59.79 E-value=4.7 Score=35.26 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC----C--CeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS----G--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~----~--k~l~~T~~G~~li~~l 542 (562)
.|..+|.+.| |+ +++|-..+|+.|.++|||.+.. + ..+.+|+.|+.+++.+
T Consensus 59 ~t~~ela~~l---~i-s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 115 (154)
T 2eth_A 59 KKMKEIAEFL---ST-TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEI 115 (154)
T ss_dssp BCHHHHHHHT---TS-CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHH
Confidence 3455555544 55 6778889999999999998731 1 2489999999988654
No 59
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=59.47 E-value=5.9 Score=35.33 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC----C--CeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS----G--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~----~--k~l~~T~~G~~li~~l 542 (562)
.|..+|-+.| |+ +++|-..+|+.|.++|||.+.. + ..+.+|+.|+.+++.+
T Consensus 60 ~t~~eLa~~l---~i-s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~ 116 (168)
T 2nyx_A 60 INLATLATLL---GV-QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQV 116 (168)
T ss_dssp EEHHHHHHHH---TS-CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHh---CC-CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHH
Confidence 3455565555 55 6788888999999999998721 1 2499999999988654
No 60
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=59.29 E-value=5.6 Score=37.44 Aligned_cols=40 Identities=13% Similarity=0.205 Sum_probs=31.6
Q ss_pred CCCCcCchhHHHHHhhcCCeEEEcCCCeeecchhHHHHHHhh
Q psy8714 501 GIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 501 GIGTpATra~iI~~L~~r~Yi~~~~~k~l~~T~~G~~li~~l 542 (562)
|++ ++|=...+++|.+.|||..++ +.+.+|+.|+.+.+.+
T Consensus 41 gvS-~~SV~~~lkkL~e~GLV~~~~-~Gv~LTe~G~~~A~~i 80 (200)
T 2p8t_A 41 ELG-EGSVRTLLRKLSHLDIIRSKQ-RGHFLTLKGKEIRDKL 80 (200)
T ss_dssp TCC-HHHHHHHHHHHHHTTSEEEC---CEEECHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHHCCCEEEeC-CCeEECHHHHHHHHHH
Confidence 443 566668999999999999865 6899999999887665
No 61
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=59.03 E-value=7 Score=33.43 Aligned_cols=51 Identities=4% Similarity=0.069 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC----C--CeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS----G--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~----~--k~l~~T~~G~~li~~l 542 (562)
.|..+|-+.| |+ +++|-..+|..|.++|||.+.. + ..+.+|+.|+.+++.+
T Consensus 52 ~~~~ela~~l---~~-~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 108 (142)
T 2bv6_A 52 VNVKKVVTEL---AL-DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPEL 108 (142)
T ss_dssp EEHHHHHHHT---TC-CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHHH
Confidence 3455555554 66 6788889999999999998732 2 2588999999988654
No 62
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=58.31 E-value=2.9 Score=34.79 Aligned_cols=40 Identities=10% Similarity=0.165 Sum_probs=32.7
Q ss_pred CcCchhHHHHHhhcCCeEEEcC----C--CeeecchhHHHHHHhhh
Q psy8714 504 TDASIPVHINNICQRNYVTVTS----G--RRLVPTSLGIVLVHGYQ 543 (562)
Q Consensus 504 TpATra~iI~~L~~r~Yi~~~~----~--k~l~~T~~G~~li~~l~ 543 (562)
+++|-..++..|.+.|+|.+.. + ..+.+|+.|+.+++.+.
T Consensus 52 s~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l~ 97 (107)
T 2fsw_A 52 SEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLPIID 97 (107)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHHHHHH
Confidence 6889999999999999998621 1 25999999999887654
No 63
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=58.30 E-value=12 Score=31.72 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCC----CcCchhHHHHHhhcCCeEEEc-----CC---CeeecchhHHHHHHhh
Q psy8714 490 ESELISLMEKHGIG----TDASIPVHINNICQRNYVTVT-----SG---RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 490 e~~Li~~Me~~GIG----TpATra~iI~~L~~r~Yi~~~-----~~---k~l~~T~~G~~li~~l 542 (562)
--+|.+.++..+-| +++|--.++..|.+.|||... .| +.+.+|+.|+..++.+
T Consensus 28 Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~ 92 (116)
T 3f8b_A 28 VYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLA 92 (116)
T ss_dssp HHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHHHH
Confidence 34566777654322 578888999999999999862 12 3488999999987543
No 64
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=57.34 E-value=6.5 Score=33.94 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC----C--CeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS----G--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~----~--k~l~~T~~G~~li~~l 542 (562)
.|..+|-+.| |+ +++|-..+|..|.++|||.+.. + ..+.+|+.|+.+++.+
T Consensus 57 ~t~~ela~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 113 (150)
T 2rdp_A 57 LTVGELSNKM---YL-ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEV 113 (150)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHH
Confidence 3555665555 55 6788889999999999998721 1 2499999999988654
No 65
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=56.98 E-value=7.4 Score=33.26 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC------CCeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS------GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~------~k~l~~T~~G~~li~~l 542 (562)
.|..+|-+.| |+ +++|-..+|..|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 53 ~t~~~la~~l---~~-s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 109 (146)
T 2fbh_A 53 PTQRELAQSV---GV-EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADI 109 (146)
T ss_dssp CBHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHH
T ss_pred CCHHHHHHHh---CC-ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHH
Confidence 5666776665 55 6778888999999999998732 13499999999987554
No 66
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=56.85 E-value=6.1 Score=36.99 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=38.8
Q ss_pred CHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcCC------CeeecchhHHHHHHhhh
Q psy8714 489 TESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSG------RRLVPTSLGIVLVHGYQ 543 (562)
Q Consensus 489 Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~~------k~l~~T~~G~~li~~l~ 543 (562)
|..+|-+.| |+ +++|-..+|..|.++|||.+... ..+.+|+.|+.+++.+.
T Consensus 64 t~~eLa~~l---~i-~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 120 (207)
T 2fxa_A 64 SISEIAKFG---VM-HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLL 120 (207)
T ss_dssp EHHHHHHHT---TC-CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHHHH
Confidence 455555544 44 68889999999999999987321 36999999999987654
No 67
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=56.68 E-value=7.3 Score=33.33 Aligned_cols=51 Identities=10% Similarity=0.218 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC----C--CeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS----G--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~----~--k~l~~T~~G~~li~~l 542 (562)
.|.++|-+.| |+ +++|-..+|..|.++|||.+.. + ..+.+|+.|+.+++.+
T Consensus 44 ~t~~~la~~l---~~-s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 100 (144)
T 1lj9_A 44 IIQEKIAELI---KV-DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPII 100 (144)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHH
Confidence 3455555544 44 6788889999999999998731 1 2489999999987554
No 68
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=56.38 E-value=6.7 Score=34.05 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=36.7
Q ss_pred CHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC----C--CeeecchhHHHHHHhh
Q psy8714 489 TESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS----G--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 489 Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~----~--k~l~~T~~G~~li~~l 542 (562)
|..+|-+.| |+ +++|-..+|..|.++|||.+.. + ..+.+|+.|+.+++.+
T Consensus 53 t~~ela~~l---~~-s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 108 (155)
T 1s3j_A 53 KVSEIAERM---EV-KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEV 108 (155)
T ss_dssp EHHHHHHHH---TS-CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHH
T ss_pred CHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHHH
Confidence 444454444 56 6788888999999999998731 1 2589999999987554
No 69
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=56.24 E-value=22 Score=29.98 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHhcCC-C---Cc-CchhHHHHHhhcCCeEEEc----CC---CeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGI-G---TD-ASIPVHINNICQRNYVTVT----SG---RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GI-G---Tp-ATra~iI~~L~~r~Yi~~~----~~---k~l~~T~~G~~li~~l 542 (562)
.+-.+|.+.++..|. + ++ +|-..++..|.+.|||... .+ +.+.+|+.|+.+....
T Consensus 27 ~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~~~ 93 (118)
T 2esh_A 27 SHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREI 93 (118)
T ss_dssp BCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHHHH
Confidence 345678888877663 2 68 9999999999999999862 12 3489999999987553
No 70
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=55.84 E-value=7.7 Score=37.68 Aligned_cols=38 Identities=8% Similarity=0.135 Sum_probs=31.8
Q ss_pred cCchhHHHHHhhcCCeEEEc----CC--CeeecchhHHHHHHhh
Q psy8714 505 DASIPVHINNICQRNYVTVT----SG--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 505 pATra~iI~~L~~r~Yi~~~----~~--k~l~~T~~G~~li~~l 542 (562)
++|-..+|++|.+.|||.+. .. ..+.+|++|+.+++.+
T Consensus 64 ~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~~~ 107 (250)
T 1p4x_A 64 QSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAER 107 (250)
T ss_dssp GGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHHHH
Confidence 89999999999999999872 11 2599999999988654
No 71
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=55.82 E-value=5 Score=34.52 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC----C--CeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS----G--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~----~--k~l~~T~~G~~li~~l 542 (562)
.|.++|-+.| |+ +++|-..+|..|.++|||.+.. + ..+.+|+.|+.++..+
T Consensus 52 ~t~~eLa~~l---~~-s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~ 108 (146)
T 3tgn_A 52 LTNSELARRL---NV-SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEH 108 (146)
T ss_dssp CCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHH
Confidence 6777877777 55 5677789999999999998632 1 3599999999988665
No 72
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=55.00 E-value=5.6 Score=33.92 Aligned_cols=52 Identities=13% Similarity=0.057 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC----C--CeeecchhHHHHHHhh
Q psy8714 487 YLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS----G--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 487 ~~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~----~--k~l~~T~~G~~li~~l 542 (562)
..|..+|-+.| |+ +++|-..+|+.|.++|||.+.. + ..+.+|+.|+.+++.+
T Consensus 50 ~~~~~ela~~l---~~-~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~~~ 107 (141)
T 3bro_A 50 EVLQRDLESEF---SI-KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETII 107 (141)
T ss_dssp CCBHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHH
T ss_pred CcCHHHHHHHH---CC-CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHHHH
Confidence 35666776665 55 5778889999999999998731 1 2588999999877554
No 73
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=54.09 E-value=9.4 Score=45.18 Aligned_cols=55 Identities=16% Similarity=0.359 Sum_probs=48.1
Q ss_pred CCeeeeeeeEEeeeecCCCCCCCHHHHHHHHH-hcCCCCcCchhHHHHHhhcCCeEE
Q psy8714 467 GDLIPIQSVKMVERKTTPPDYLTESELISLME-KHGIGTDASIPVHINNICQRNYVT 522 (562)
Q Consensus 467 G~~~~~~~~~i~e~~TkPP~~~Te~~Li~~Me-~~GIGTpATra~iI~~L~~r~Yi~ 522 (562)
+..+.|.+++.++++..||++||-++|.+.+- +.|++..-|. .|.+.|++.|||.
T Consensus 795 ~~~~~V~~v~~k~~~~~pp~pf~t~~Lq~~a~~~~g~s~~~tm-~iaQ~LYe~g~iT 850 (1104)
T 4ddu_A 795 DDVVTVVELQEAEEEKNPLPPYTTSSALSEISQKLRLGVQEVM-DILQDLFEKGFIT 850 (1104)
T ss_dssp CCEEEEEEEEEEEEEECCCCCBCHHHHHHHHHHHSSCCHHHHH-HHHHHHHHTTSBS
T ss_pred CCcEEEEEEEeeeEEecCCCCCCHHHHHHHHHHHcCCCHHHHH-HHHHHHHhCCcee
Confidence 56788889999999999999999999998875 5688888777 4889999999996
No 74
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=54.02 E-value=8.6 Score=32.90 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC----C--CeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS----G--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~----~--k~l~~T~~G~~li~~l 542 (562)
.|.++|-+.| |+ +++|-..+|..|.++|||.+.. + ..+.+|+.|+.+++.+
T Consensus 51 ~~~~ela~~l---~~-s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~ 107 (146)
T 2gxg_A 51 KTMAYLANRY---FV-TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKG 107 (146)
T ss_dssp BCHHHHHHHT---TC-CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred cCHHHHHHHh---CC-CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHH
Confidence 4666666655 55 6778888999999999998631 1 2489999999988654
No 75
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=53.91 E-value=8.2 Score=37.40 Aligned_cols=43 Identities=12% Similarity=0.202 Sum_probs=33.7
Q ss_pred CCCCcCchhHHHHHhhcCCeEEEc-CCCeeecchhHHHHHHhhhc
Q psy8714 501 GIGTDASIPVHINNICQRNYVTVT-SGRRLVPTSLGIVLVHGYQK 544 (562)
Q Consensus 501 GIGTpATra~iI~~L~~r~Yi~~~-~~k~l~~T~~G~~li~~l~~ 544 (562)
|+ +++|-..++++|.+.|||... ..+.+.+|++|+.+.+....
T Consensus 177 gl-sksTv~r~L~~Le~~GlV~r~~r~~~~~LT~~G~~l~~~~~~ 220 (244)
T 2wte_A 177 DK-SEKTLINKIAELKKFGILTQKGKDRKVELNELGLNVIKLNKS 220 (244)
T ss_dssp TC-CHHHHHHHHHHHHHTTSEEEETTTTEEEECHHHHHHHHHTC-
T ss_pred Cc-CHHHHHHHHHHHHHCCCEEEeCCccEEEECHHHHHHHHHHhc
Confidence 44 467777899999999999873 23579999999999876543
No 76
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=53.90 E-value=6 Score=34.44 Aligned_cols=51 Identities=18% Similarity=0.095 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC------CCeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS------GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~------~k~l~~T~~G~~li~~l 542 (562)
.|..+|-+.| |+ +++|-..+|..|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 62 ~t~~ela~~l---~~-s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 118 (153)
T 2pex_A 62 RSVSEIGERL---YL-DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSKA 118 (153)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGGS
T ss_pred cCHHHHHHHh---CC-CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHHH
Confidence 4566666555 55 6788889999999999998732 13599999999987654
No 77
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=53.86 E-value=5.4 Score=38.82 Aligned_cols=52 Identities=10% Similarity=0.027 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEc----CC--CeeecchhHHHHHHhh
Q psy8714 487 YLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT----SG--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 487 ~~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~----~~--k~l~~T~~G~~li~~l 542 (562)
..|..+|-+.| |+ +++|-..+|+.|.++|||.+. .+ ..+.+|+.|+.+++.+
T Consensus 174 ~~t~~eLa~~l---~i-~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~~~ 231 (250)
T 1p4x_A 174 IVLLKDLIETI---HH-KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQL 231 (250)
T ss_dssp CEEHHHHHHHS---SS-CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHH
T ss_pred CcCHHHHHHHH---CC-ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHHHH
Confidence 35666766665 44 688899999999999999972 12 3599999999998764
No 78
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=53.77 E-value=8.3 Score=33.83 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC----C--CeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS----G--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~----~--k~l~~T~~G~~li~~l 542 (562)
.|..+|-+.| |+ +++|-..+|..|.++|||.+.. + ..+.+|+.|+.+++.+
T Consensus 67 ~t~~ela~~l---~i-s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 123 (162)
T 3cjn_A 67 LPIGTLGIFA---VV-EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRL 123 (162)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHH
Confidence 3455666555 56 5778888999999999998731 1 2489999999988654
No 79
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=53.56 E-value=6.1 Score=33.07 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=38.1
Q ss_pred CHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC----C--CeeecchhHHHHHHhhh
Q psy8714 489 TESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS----G--RRLVPTSLGIVLVHGYQ 543 (562)
Q Consensus 489 Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~----~--k~l~~T~~G~~li~~l~ 543 (562)
+-++|-+.|. || +++|-..++..|.+.|||.+.. + ..+.+|+.|+.+.+.+.
T Consensus 37 ~~~eLa~~l~--~i-s~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~~~~~ 94 (112)
T 1z7u_A 37 RNGELMRALD--GI-TQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYDALS 94 (112)
T ss_dssp CHHHHHHHST--TC-CHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHhc--cC-CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHHHHHH
Confidence 4455555442 55 7888899999999999998631 1 24899999999887653
No 80
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=53.37 E-value=8.6 Score=31.74 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=27.7
Q ss_pred chhHHHHHhhcCCeEEEcCCCeeecchhHHHHHHhh
Q psy8714 507 SIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 507 Tra~iI~~L~~r~Yi~~~~~k~l~~T~~G~~li~~l 542 (562)
|-..-|+.|.++|||+. .|..+.+|+.|+.+++.-
T Consensus 47 tvsrnl~~L~r~GlVe~-~~~Dl~LT~~G~~~l~~a 81 (95)
T 1bja_A 47 VVNSNIGVLIKKGLVEK-SGDGLIITGEAQDIISNA 81 (95)
T ss_dssp HHHHHHHHHHTTTSEEE-ETTEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeec-CCCCeeeCHhHHHHHHHH
Confidence 44446888999999983 565699999999998653
No 81
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=52.84 E-value=6.2 Score=33.62 Aligned_cols=41 Identities=12% Similarity=-0.041 Sum_probs=32.3
Q ss_pred CCCCcCchhHHHHHhhcCCeEEEcC------CCeeecchhHHHHHHhh
Q psy8714 501 GIGTDASIPVHINNICQRNYVTVTS------GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 501 GIGTpATra~iI~~L~~r~Yi~~~~------~k~l~~T~~G~~li~~l 542 (562)
|+ +++|-..+|+.|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 61 ~~-s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 107 (142)
T 2fbi_A 61 CI-LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSM 107 (142)
T ss_dssp TC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred CC-CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHHH
Confidence 55 5778888999999999998631 12489999999988654
No 82
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=52.25 E-value=11 Score=44.45 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=45.7
Q ss_pred eeeeeeeEEeeeecCCCCCCCHHHHHHHHH-hcCCCCcCchhHHHHHhhcCCeEE
Q psy8714 469 LIPIQSVKMVERKTTPPDYLTESELISLME-KHGIGTDASIPVHINNICQRNYVT 522 (562)
Q Consensus 469 ~~~~~~~~i~e~~TkPP~~~Te~~Li~~Me-~~GIGTpATra~iI~~L~~r~Yi~ 522 (562)
.+.+.+++-++++..||++||-++|.+.+- +.|++..-|. .|.+.|++.|||.
T Consensus 755 ~~~V~~v~~k~~~~~pp~pf~~~~Lq~~a~~~~g~s~~~tm-~iaQ~LYe~g~iT 808 (1054)
T 1gku_B 755 DLTIKLVEEREELRTPLPPYTTETMLSDANRILKFSVKQTM-QIAQELFENGLIT 808 (1054)
T ss_dssp EEEEEEEEEEEEEECCCCCBCHHHHHHHHHHTSCCCHHHHH-HHHHHHHHTTSBB
T ss_pred EEEEEEEEeeEEEecCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHHHHHhcCcee
Confidence 567888888999999999999999999884 5688777776 6899999999996
No 83
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=52.03 E-value=7.3 Score=33.31 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC---C---CeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS---G---RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~---~---k~l~~T~~G~~li~~l 542 (562)
.|..+|-+.| |+ +++|-..+|..|.++|||.+.. + ..+.+|+.|+.+++.+
T Consensus 48 ~~~~~la~~l---~~-s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~ 104 (145)
T 2a61_A 48 KRPGELSVLL---GV-AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKV 104 (145)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHH
Confidence 4555665555 55 6778889999999999998731 1 2589999999988654
No 84
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=51.75 E-value=6.7 Score=33.29 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC----C--CeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS----G--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~----~--k~l~~T~~G~~li~~l 542 (562)
.|..+|-+.| |+ +++|-..+|..|.++|||.+.. + ..+.+|+.|+.+++.+
T Consensus 53 ~t~~ela~~l---~~-~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 109 (140)
T 2nnn_A 53 CPQNQLGRLT---AM-DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAG 109 (140)
T ss_dssp BCHHHHHHHT---TC-CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHHH
Confidence 3444554443 55 6778888999999999998721 1 2489999999987654
No 85
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=51.53 E-value=6.8 Score=34.00 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=32.9
Q ss_pred CcCchhHHHHHhhcCCeEEEcC----C--CeeecchhHHHHHHhhh
Q psy8714 504 TDASIPVHINNICQRNYVTVTS----G--RRLVPTSLGIVLVHGYQ 543 (562)
Q Consensus 504 TpATra~iI~~L~~r~Yi~~~~----~--k~l~~T~~G~~li~~l~ 543 (562)
+++|-..++..|.+.|||.+.. + ..+.+|++|+.++..+.
T Consensus 62 s~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l~ 107 (131)
T 1yyv_A 62 SEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDXVA 107 (131)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHHHHHH
Confidence 7889999999999999998621 1 25999999999887654
No 86
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=51.27 E-value=11 Score=41.70 Aligned_cols=110 Identities=14% Similarity=0.144 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHHHh--hcccCceEEEEEEEEEECCeEEEEEEEEEeecceeeeecccccc-cCCCCCCCCCCeeeee
Q psy8714 397 DGDAWRLYDYIVRHFIG--TLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQ 473 (562)
Q Consensus 397 ~~~e~~vY~lI~rr~la--~~~~~a~~~~t~v~~~~~~~~F~a~g~~~~~~Gw~~v~~~~~~~-~~~Lp~l~~G~~~~~~ 473 (562)
+.-+--.-.||+.|... .|-|..-| ...+.+ .+ |.+.- ...|- .+. +... +..+ .+ ..+.|.
T Consensus 166 GRVQtptL~lIv~Re~eI~~F~p~~y~-~i~~~~--~~--~~a~~---~~~~~-~~~--~~~~a~~~~-~~---~~~~V~ 230 (633)
T 2gai_A 166 GRVQSATLKLVCDREREILRFVPKKYH-RITVNF--DG--LTAEI---DVKEK-KFF--DAETLKEIQ-SI---DELVVE 230 (633)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCEEE-EEEEEE--TT--EEEEE---CCSSC-CCC--CHHHHHHHH-TC---CCEEEE
T ss_pred CccchHHHHHHHHHHHHHHhCCCcceE-EEEEEE--ee--EEEEE---ecCCc-ccC--CHHHHHHHH-hC---CCeEEE
Confidence 34566677889999876 55554443 333333 33 55532 00110 111 1111 2223 44 457788
Q ss_pred eeEEeeeecCCCCCCCHHHHHHHH-HhcCCCCcCchhHHHHHhhcC--------CeEE
Q psy8714 474 SVKMVERKTTPPDYLTESELISLM-EKHGIGTDASIPVHINNICQR--------NYVT 522 (562)
Q Consensus 474 ~~~i~e~~TkPP~~~Te~~Li~~M-e~~GIGTpATra~iI~~L~~r--------~Yi~ 522 (562)
+++.++++..||++||-++|...+ .+.|++..-|. .|.+.|++. |||.
T Consensus 231 ~v~~k~~~~~pP~pf~ts~LQ~~As~~lg~sa~~tm-~iaQ~LYE~~~~~~~~~glIT 287 (633)
T 2gai_A 231 EKKVSVKKFAPPEPFKTSTLQQEAYSKLGFSVSKTM-MIAQQLYEGVETKDGHIAFIT 287 (633)
T ss_dssp EEEEEEEEECCCCCBCHHHHHHHHHHHHCCCHHHHH-HHHHHHHHCEECSSSEECCBC
T ss_pred EEEEEEEEecCCCCccHHHHHHHHHHHcCCCHHHHH-HHHHHHhhccccccCccceEE
Confidence 999999999999999999999987 46799888887 489999998 8886
No 87
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=50.72 E-value=9.4 Score=32.40 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC------CCeeecchhHHHHH-Hh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS------GRRLVPTSLGIVLV-HG 541 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~------~k~l~~T~~G~~li-~~ 541 (562)
.|..+|-+.| |+ +++|-..+|..|.++|||.+.. ...+.+|+.|+.++ +.
T Consensus 46 ~~~~ela~~l---~i-s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~~~~ 102 (142)
T 3bdd_A 46 LHQLALQERL---QI-DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITN 102 (142)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHTTS
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHH
Confidence 4555555554 55 6788889999999999998731 23589999999998 44
No 88
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=50.69 E-value=5.2 Score=33.62 Aligned_cols=54 Identities=6% Similarity=0.118 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHh-cCCCCcCchhHHHHHhhcCCeEEEcC-CC---eeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEK-HGIGTDASIPVHINNICQRNYVTVTS-GR---RLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~-~GIGTpATra~iI~~L~~r~Yi~~~~-~k---~l~~T~~G~~li~~l 542 (562)
.|..+|.+.|.. .++ +++|-..+|+.|.++|||.+.. ++ .+.+|+.|..+.+.+
T Consensus 25 ~t~~ela~~l~~~~~~-s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~~~ 83 (123)
T 1okr_A 25 ASANNIIEEIQMQKDW-SPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTS 83 (123)
T ss_dssp EEHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHHH
T ss_pred cCHHHHHHHHhccCCC-cHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHHHH
Confidence 466667666642 233 6788899999999999998732 33 267999999876543
No 89
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=50.51 E-value=13 Score=36.11 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcCCCeeecchhHHHHHH
Q psy8714 485 PDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVH 540 (562)
Q Consensus 485 P~~~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~~k~l~~T~~G~~li~ 540 (562)
+...+-++||..|+..||+-++.|.+ +..|.++|.++.++ ..+.+|+.|+...+
T Consensus 18 g~~i~~~~Li~l~~~~Gi~e~avRtA-lsRL~~~G~L~~~~-~GY~LT~~~~~~~~ 71 (247)
T 3kfw_X 18 PAWATASELIQLTADFGIKETTLRVA-LTRMVGAGDLVRSA-DGYRLSDRLLARQR 71 (247)
T ss_dssp TSCBCHHHHHHHHTTTTCCHHHHHHH-HHHHHHTTSEEEET-TEEEECHHHHHHHH
T ss_pred CCcccHHHHHHHHHHcCCChHHHHHH-HHHHHHcCCeeccC-CceeeCHHHHHHHH
Confidence 66788999999999999999999976 56999999999743 34999999988664
No 90
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=50.32 E-value=4.3 Score=33.72 Aligned_cols=40 Identities=8% Similarity=0.014 Sum_probs=31.9
Q ss_pred CcCchhHHHHHhhcCCeEEEcC----C--CeeecchhHHHHHHhhh
Q psy8714 504 TDASIPVHINNICQRNYVTVTS----G--RRLVPTSLGIVLVHGYQ 543 (562)
Q Consensus 504 TpATra~iI~~L~~r~Yi~~~~----~--k~l~~T~~G~~li~~l~ 543 (562)
+++|-..++..|.+.|||.+.. + ..+.+|+.|+.+.+.+.
T Consensus 41 s~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~~~~~ 86 (107)
T 2hzt_A 41 TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGILD 86 (107)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHHHHHH
Confidence 6778889999999999998621 1 25899999998876653
No 91
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=50.08 E-value=5.8 Score=34.92 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC-----CCeeecchhHHHHHHhh
Q psy8714 487 YLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS-----GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 487 ~~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~-----~k~l~~T~~G~~li~~l 542 (562)
..|.++|-+.| |+ +++|-..+|+.|.++|||.... .+.+.+|+.|+.+++.+
T Consensus 52 ~~t~~eLa~~l---~~-~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~~~~~~ 108 (148)
T 4fx0_A 52 DLTMSELAARI---GV-ERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAALQKA 108 (148)
T ss_dssp --CHHHHHHHH---TC-CHHHHHHHHHHHHHTTSBC-----------CCBCHHHHHHHHHH
T ss_pred CcCHHHHHHHH---CC-ChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHHHHHHH
Confidence 35566666555 33 5678889999999999995411 13599999999987654
No 92
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=49.40 E-value=20 Score=30.33 Aligned_cols=53 Identities=9% Similarity=0.182 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCC--CcCchhHHHHHhhcCCeEEEc-----CC---CeeecchhHHHHHHhh
Q psy8714 490 ESELISLMEKHGIG--TDASIPVHINNICQRNYVTVT-----SG---RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 490 e~~Li~~Me~~GIG--TpATra~iI~~L~~r~Yi~~~-----~~---k~l~~T~~G~~li~~l 542 (562)
--+|.+.++..|.- +++|--.++..|.+.|||... .| +.+.+|+.|+...+.+
T Consensus 27 Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~ 89 (117)
T 4esf_A 27 GYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELF 89 (117)
T ss_dssp HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHH
Confidence 44677777765542 577888899999999999862 12 3488999999877543
No 93
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=48.77 E-value=7.2 Score=37.06 Aligned_cols=42 Identities=26% Similarity=0.297 Sum_probs=34.5
Q ss_pred cCCCCcCchhHHHHHhhcCCeEEEc---CCCeeecchhHHHHHHhh
Q psy8714 500 HGIGTDASIPVHINNICQRNYVTVT---SGRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 500 ~GIGTpATra~iI~~L~~r~Yi~~~---~~k~l~~T~~G~~li~~l 542 (562)
.|+ |++|-+.+|..|-+.||+.+. .++.+.+|+.|+.+++..
T Consensus 37 L~i-sq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~~~ 81 (230)
T 3cta_A 37 LGI-SQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTE 81 (230)
T ss_dssp HTS-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred HCC-CHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHHHH
Confidence 355 678888999999999999983 156899999999988654
No 94
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=47.36 E-value=14 Score=32.70 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=38.5
Q ss_pred CHHHHHHHHHhc-----CCCCcCchhHHHHHhhcCCeEEEc-----CC---CeeecchhHHHHHHhh
Q psy8714 489 TESELISLMEKH-----GIGTDASIPVHINNICQRNYVTVT-----SG---RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 489 Te~~Li~~Me~~-----GIGTpATra~iI~~L~~r~Yi~~~-----~~---k~l~~T~~G~~li~~l 542 (562)
+-.+|.+.|+.. +| +++|-..++..|.+.|||... .+ +.+.+|+.|+.+++.+
T Consensus 56 ~gyeI~~~l~~~~~~~~~i-s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~ 121 (145)
T 1xma_A 56 YGYEISKNIRIKTDELYVI-KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQK 121 (145)
T ss_dssp EHHHHHHHHHHHHTTSCCC-CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhCCccCc-ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHHHH
Confidence 445666667543 23 678889999999999999762 12 3589999999987543
No 95
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=46.64 E-value=5.9 Score=41.77 Aligned_cols=51 Identities=4% Similarity=-0.018 Sum_probs=37.5
Q ss_pred CHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEc----C--CCeeecchhHHHHHHhhh
Q psy8714 489 TESELISLMEKHGIGTDASIPVHINNICQRNYVTVT----S--GRRLVPTSLGIVLVHGYQ 543 (562)
Q Consensus 489 Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~----~--~k~l~~T~~G~~li~~l~ 543 (562)
|..+|-+.| ++ +++|-..+|++|.++|||.++ . ...+.+|++|+.+++.+.
T Consensus 422 ~~~~l~~~~---~~-~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~~~~~ 478 (487)
T 1hsj_A 422 SSKEIAKCS---EF-KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKLI 478 (487)
T ss_dssp EHHHHHHSS---CC-CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHHH
T ss_pred CHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHHHHHH
Confidence 444554443 33 478889999999999999862 1 235999999999987653
No 96
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=46.37 E-value=10 Score=30.25 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=30.6
Q ss_pred CCCCcCchhHHHHHhhcCCeEEEcC----C--CeeecchhHHHHHHh
Q psy8714 501 GIGTDASIPVHINNICQRNYVTVTS----G--RRLVPTSLGIVLVHG 541 (562)
Q Consensus 501 GIGTpATra~iI~~L~~r~Yi~~~~----~--k~l~~T~~G~~li~~ 541 (562)
|+ +++|-..+|..|.+.|||.... + ..+.+|+.|+.++..
T Consensus 41 ~i-s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~ 86 (100)
T 1ub9_A 41 DL-TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKR 86 (100)
T ss_dssp TC-CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHH
T ss_pred Cc-CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHH
Confidence 55 5678889999999999998522 2 358899999876644
No 97
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=46.16 E-value=6.9 Score=34.55 Aligned_cols=50 Identities=12% Similarity=0.178 Sum_probs=36.3
Q ss_pred CHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC-----CCeeecchhHHHHHHhh
Q psy8714 489 TESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS-----GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 489 Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~-----~k~l~~T~~G~~li~~l 542 (562)
+-.+|-+.| || +++|-+.+|..|.+.|||.+.. ...+.+|++|+.+...+
T Consensus 39 ~~~eLa~~l---gi-s~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~~~l 93 (146)
T 2f2e_A 39 RFGEFQKSL---GL-AKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALFPLL 93 (146)
T ss_dssp SHHHHHHHH---CC-CHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTHHHH
T ss_pred CHHHHHHHh---CC-CHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHHHHH
Confidence 334454444 55 6778889999999999998732 23689999999876554
No 98
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=45.51 E-value=15 Score=29.41 Aligned_cols=51 Identities=10% Similarity=0.196 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC---C--CeeecchhHHHHHHhh
Q psy8714 488 LTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS---G--RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 488 ~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~---~--k~l~~T~~G~~li~~l 542 (562)
.|..+|.+.+ |+ +++|-..+|+.|.++|||.... + +.+..|+.|..+++.+
T Consensus 35 ~s~~ela~~l---~i-s~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~~ 90 (109)
T 1sfx_A 35 MRVSEIAREL---DL-SARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEF 90 (109)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHHHHHHH
Confidence 4555665555 55 5678889999999999998621 2 3478999999988765
No 99
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=45.39 E-value=35 Score=28.04 Aligned_cols=74 Identities=8% Similarity=-0.007 Sum_probs=47.8
Q ss_pred chHHHHHhhcccCCeEEEecCCCccchhHHHHHHHHHhhhcccCCCCcEEEEEecccCHHHHHHHHHhCCCChHhHHHHH
Q psy8714 95 KLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSV 174 (562)
Q Consensus 95 ~~i~~L~~~~~~~d~Ii~AtD~DREGE~I~~~i~~~~~~~~~~~~~~~v~Rl~~sslt~~~I~~A~~nl~~~~~~l~~a~ 174 (562)
++.+.|++ .++..||+|.|++.. +-.++..+|.. .+.|+..+ .|..++=.|+..-.-.--...+++
T Consensus 26 ~v~kai~~--gka~lViiA~D~~~~---~~~~i~~~c~~-----~~vp~~~~----~s~~eLG~A~Gk~~~~~~ai~D~g 91 (101)
T 3v7q_A 26 LVIKEIRN--ARAKLVLLTEDASSN---TAKKVTDKCNY-----YKVPYKKV----ESRAVLGRSIGKEARVVVAVTDQG 91 (101)
T ss_dssp HHHHHHHT--TCCSEEEEETTSCHH---HHHHHHHHHHH-----TTCCEEEE----SCHHHHHHHTTSSCCSEEEECCHH
T ss_pred hhHHHHhc--CceeEEEEecccccc---chhhhcccccc-----cCCCeeee----chHHHHHhhhCccceEEEEEeccH
Confidence 46677765 688999999999965 44666666643 25676543 689999999875311112334566
Q ss_pred HHHHhHHh
Q psy8714 175 DARQELDL 182 (562)
Q Consensus 175 ~aR~~~D~ 182 (562)
+|+.+.+.
T Consensus 92 ~a~~i~~~ 99 (101)
T 3v7q_A 92 FANKLISL 99 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66665543
No 100
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=45.04 E-value=6.8 Score=33.68 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=32.2
Q ss_pred CCCCcCchhHHHHHhhcCCeEEEcC------CCeeecchhHHHHHHhh
Q psy8714 501 GIGTDASIPVHINNICQRNYVTVTS------GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 501 GIGTpATra~iI~~L~~r~Yi~~~~------~k~l~~T~~G~~li~~l 542 (562)
|+ +++|-..+|..|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 65 ~~-~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~~ 111 (147)
T 1z91_A 65 YL-DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKA 111 (147)
T ss_dssp TC-CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGT
T ss_pred CC-CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHHH
Confidence 55 6788888999999999998731 13489999999887543
No 101
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=43.28 E-value=15 Score=36.00 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEcC-C--CeeecchhHHHHHH
Q psy8714 486 DYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS-G--RRLVPTSLGIVLVH 540 (562)
Q Consensus 486 ~~~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~~-~--k~l~~T~~G~~li~ 540 (562)
....-++|+..|+..||.-+|.|.. +..|.++|.++.++ | ..+.+|+.|+..++
T Consensus 41 ~~i~~~~Li~l~~~~Gi~~~avR~A-l~RL~~~G~l~~~~~Gr~~~Y~Lt~~g~~~l~ 97 (266)
T 3l09_A 41 IEVSGVALSSFVERMGLQPQAMRVA-LHRLKRDGWVESRRLGRVGFHRLSDSALTQTR 97 (266)
T ss_dssp CCEEHHHHHHHHHHTTCCHHHHHHH-HHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred CcccHHHHHHHHHHcCCCchHHHHH-HHHHHHCCCeeeeecCCcceEEECHHHHHHHH
Confidence 3567889999999999999999975 57999999998632 2 26899999998774
No 102
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=42.53 E-value=54 Score=26.78 Aligned_cols=73 Identities=10% Similarity=-0.035 Sum_probs=47.0
Q ss_pred chHHHHHhhcccCCeEEEecCCCccchhHHHHHHHHHhhhcccCCCCcEEEEEecccCHHHHHHHHHhCCCChHhHHHHH
Q psy8714 95 KLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSV 174 (562)
Q Consensus 95 ~~i~~L~~~~~~~d~Ii~AtD~DREGE~I~~~i~~~~~~~~~~~~~~~v~Rl~~sslt~~~I~~A~~nl~~~~~~l~~a~ 174 (562)
++.+.|++ .++..||+|.|++.. +-.+|..+|... +.|+.. -.|..++=.|+..-.-.--...+.+
T Consensus 25 ~v~kai~~--gka~lViiA~D~~~~---~~~~i~~~c~~~-----~ip~~~----~~s~~eLG~a~Gk~~~~~vai~d~g 90 (101)
T 3on1_A 25 QVVKAVQN--GQVTLVILSSDAGIH---TKKKLLDKCGSY-----QIPVKV----VGNRQMLGRAIGKHERVVIGVKDAG 90 (101)
T ss_dssp HHHHHHHT--TCCSEEEEETTSCHH---HHHHHHHHHHHH-----TCCEEE----ESCHHHHHHHTTSSCCSEEEECCHH
T ss_pred HHHHHHHc--CCCcEEEEeCCCCHH---HHHHHHHHHHHc-----CCCEEE----eCCHHHHHHHhCCcCeEEEEEECcc
Confidence 46677765 688999999999974 445676666542 466643 3789999999865311112234566
Q ss_pred HHHHhHH
Q psy8714 175 DARQELD 181 (562)
Q Consensus 175 ~aR~~~D 181 (562)
+|+.+..
T Consensus 91 ~a~~i~~ 97 (101)
T 3on1_A 91 FSRKLAA 97 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 103
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=42.49 E-value=30 Score=29.08 Aligned_cols=53 Identities=21% Similarity=0.272 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCC--CCcCchhHHHHHhhcCCeEEEc-----CC---CeeecchhHHHHHHhh
Q psy8714 490 ESELISLMEKHGI--GTDASIPVHINNICQRNYVTVT-----SG---RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 490 e~~Li~~Me~~GI--GTpATra~iI~~L~~r~Yi~~~-----~~---k~l~~T~~G~~li~~l 542 (562)
--+|.+.|+..|. =+++|--.++.+|.+.|||... .| +.+.+|+.|+..++.+
T Consensus 25 Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~ 87 (115)
T 4esb_A 25 GYELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQLEEF 87 (115)
T ss_dssp HHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHHHHH
Confidence 3467777776553 2578888999999999999852 12 2478999999877543
No 104
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=41.38 E-value=16 Score=30.24 Aligned_cols=50 Identities=10% Similarity=0.162 Sum_probs=36.1
Q ss_pred HHHHHHHh-cCCCCcCchhHHHHHhhcCCeEEEc----CC---CeeecchhHHHHHHhh
Q psy8714 492 ELISLMEK-HGIGTDASIPVHINNICQRNYVTVT----SG---RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 492 ~Li~~Me~-~GIGTpATra~iI~~L~~r~Yi~~~----~~---k~l~~T~~G~~li~~l 542 (562)
.|.+.++. .+| +++|-..++..|.+.|||... .| +.+.+|+.|+..++.+
T Consensus 27 el~~~l~~~~~i-~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~ 84 (108)
T 3l7w_A 27 DISQTIKLIASI-KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYL 84 (108)
T ss_dssp HHHHHHTTTCCC-CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHH
Confidence 45555543 233 678888999999999999862 23 2477999999987554
No 105
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=41.29 E-value=26 Score=29.47 Aligned_cols=38 Identities=13% Similarity=-0.004 Sum_probs=30.1
Q ss_pred CcCchhHHHHHhhcCCeEEEc---C---C---CeeecchhHHHHHHh
Q psy8714 504 TDASIPVHINNICQRNYVTVT---S---G---RRLVPTSLGIVLVHG 541 (562)
Q Consensus 504 TpATra~iI~~L~~r~Yi~~~---~---~---k~l~~T~~G~~li~~ 541 (562)
++.|--.++.+|.+.|||... . | +.+.+|+.|+...+.
T Consensus 55 s~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~~ 101 (115)
T 2dql_A 55 SDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAED 101 (115)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHH
T ss_pred CcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHHH
Confidence 567888899999999999862 1 2 359999999988754
No 106
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=39.57 E-value=23 Score=29.21 Aligned_cols=53 Identities=9% Similarity=0.094 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEc---CC-CeeecchhHHHHHHhh
Q psy8714 486 DYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVT---SG-RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 486 ~~~Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~---~~-k~l~~T~~G~~li~~l 542 (562)
...+.+.|-+.|. + ..+|-.-.+..|.++|||.+. .+ +.+.+|+.|+.+++.+
T Consensus 35 ~~~s~~eLa~~l~---l-~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l~~~ 91 (96)
T 2obp_A 35 TPWSLPKIAKRAQ---L-PMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALAAQL 91 (96)
T ss_dssp CCCBHHHHHHHHT---C-CHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHHHHH
T ss_pred CCcCHHHHHHHhC---C-chhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHHHHh
Confidence 3345666655552 2 234556689999999999972 22 3589999999999765
No 107
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=37.59 E-value=44 Score=26.58 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHhhCCCCHHHHHHHHHHhHhcCceee
Q psy8714 295 ALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSY 331 (562)
Q Consensus 295 pf~l~~Lq~~a~~~~g~s~~~tl~iaQ~LYE~glISY 331 (562)
+.+..+|.+..++.+|+|+.-+..+++.|-++|||.-
T Consensus 22 ~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r 58 (99)
T 1tbx_A 22 GIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKE 58 (99)
T ss_dssp TCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEE
Confidence 4667777766688999999999999999999999975
No 108
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=35.74 E-value=40 Score=28.37 Aligned_cols=52 Identities=13% Similarity=0.252 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCC--CCcCchhHHHHHhhcCCeEEEc-----CC---CeeecchhHHHHHHhh
Q psy8714 491 SELISLMEKHGI--GTDASIPVHINNICQRNYVTVT-----SG---RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 491 ~~Li~~Me~~GI--GTpATra~iI~~L~~r~Yi~~~-----~~---k~l~~T~~G~~li~~l 542 (562)
-+|.+.++..|. =+++|--.++..|.+.|+|... .| +.+.+|+.|+...+.+
T Consensus 30 yei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l~~~ 91 (116)
T 3hhh_A 30 YEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELADF 91 (116)
T ss_dssp HHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHH
Confidence 467777776554 2577888899999999999852 12 3588999999987543
No 109
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=35.44 E-value=25 Score=29.71 Aligned_cols=37 Identities=11% Similarity=0.215 Sum_probs=29.1
Q ss_pred CcCchhHHHHHhhcCCeEEEcCCCeeecchhHHHHHH
Q psy8714 504 TDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVH 540 (562)
Q Consensus 504 TpATra~iI~~L~~r~Yi~~~~~k~l~~T~~G~~li~ 540 (562)
++.+-..++..|.+.|+|.......+.+|+.|+.++.
T Consensus 42 S~~aVs~rL~~Le~~GLV~~~~rg~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 42 SKSSVSRRLKKLADHDLLQPLANGVYVITEEGEAYLN 78 (111)
T ss_dssp CHHHHHHHHHHHHHTTSEEECSTTCEEECHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCEEecCCceEEECchHHHHHH
Confidence 3445567999999999999743336999999999885
No 110
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=35.43 E-value=41 Score=25.87 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 295 ALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 295 pf~l~~Lq~~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
|.+..+|...++...++++.-+..++..|-++|+|+.-+
T Consensus 23 ~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 23 SINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp SEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 567888988887666899999999999999999998765
No 111
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=34.93 E-value=10 Score=33.01 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=32.4
Q ss_pred CcCchhHHHHHhhcCCeEEEcC------CCeeecchhHHHHHHhhhc
Q psy8714 504 TDASIPVHINNICQRNYVTVTS------GRRLVPTSLGIVLVHGYQK 544 (562)
Q Consensus 504 TpATra~iI~~L~~r~Yi~~~~------~k~l~~T~~G~~li~~l~~ 544 (562)
+++|-..++..|.+.|+|.+.. ...+.+|++|+.+...+..
T Consensus 53 s~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~~l~~ 99 (131)
T 4a5n_A 53 TQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQ 99 (131)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHHHHHH
Confidence 5678889999999999998731 1258999999998876643
No 112
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=34.44 E-value=38 Score=26.98 Aligned_cols=31 Identities=10% Similarity=0.055 Sum_probs=26.4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHhHhcCceeec
Q psy8714 302 MRVASSGLGMGPHHAMQIAERLYTQGYVSYP 332 (562)
Q Consensus 302 q~~a~~~~g~s~~~tl~iaQ~LYE~glISYP 332 (562)
|.+.++.+|+++.-+..++..|-++|||..|
T Consensus 33 ~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~ 63 (95)
T 2qvo_A 33 IQYIASKVNSPHSYVWLIIKKFEEAKMVECE 63 (95)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCcCccCC
Confidence 3556778999999999999999999999444
No 113
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=34.39 E-value=34 Score=25.75 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHhhCCCCHHHHHHHHHHhHhcCceeecCC
Q psy8714 295 ALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRT 334 (562)
Q Consensus 295 pf~l~~Lq~~a~~~~g~s~~~tl~iaQ~LYE~glISYPRT 334 (562)
|.+..+ .++.+|+|...+.++++.|=+.|+|..+++
T Consensus 25 ~~s~~e----LA~~lglsr~tv~~~l~~L~~~G~I~~~~~ 60 (67)
T 2heo_A 25 PVAIFQ----LVKKCQVPKKTLNQVLYRLKKEDRVSSPSP 60 (67)
T ss_dssp CEEHHH----HHHHHCSCHHHHHHHHHHHHHTTSEEEEET
T ss_pred CcCHHH----HHHHHCcCHHHHHHHHHHHHHCCcEecCCC
Confidence 455544 456789999999999999999999987654
No 114
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=33.60 E-value=34 Score=27.97 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=25.8
Q ss_pred HHHhhCCCCHHHHHHHHHHhHhcCceeec
Q psy8714 304 VASSGLGMGPHHAMQIAERLYTQGYVSYP 332 (562)
Q Consensus 304 ~a~~~~g~s~~~tl~iaQ~LYE~glISYP 332 (562)
+.+..+|+|..-+-++++.|.+.|+|++-
T Consensus 38 eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 38 EIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 35668999999999999999999999875
No 115
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=29.71 E-value=32 Score=29.01 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=37.5
Q ss_pred HHHHHHHHhc---CCCCcCchhHHHHHhhcCCeEEEc-----CC---CeeecchhHHHHHHhh
Q psy8714 491 SELISLMEKH---GIGTDASIPVHINNICQRNYVTVT-----SG---RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 491 ~~Li~~Me~~---GIGTpATra~iI~~L~~r~Yi~~~-----~~---k~l~~T~~G~~li~~l 542 (562)
-+|.+.++.. .| +++|--.++..|.+.|||... .| +.+.+|+.|+...+..
T Consensus 31 yel~~~l~~~~~~~i-~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~~ 92 (117)
T 3elk_A 31 YELQKSMFETTGQAL-PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDH 92 (117)
T ss_dssp HHHHHHHHHHHSCCC-CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCC-CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHH
Confidence 4566666642 24 578999999999999999852 12 3588999999987553
No 116
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=29.01 E-value=40 Score=26.01 Aligned_cols=32 Identities=22% Similarity=0.090 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHhhCCCCHHHHHHHHHHhHhcCceee
Q psy8714 296 LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSY 331 (562)
Q Consensus 296 f~l~~Lq~~a~~~~g~s~~~tl~iaQ~LYE~glISY 331 (562)
.+..+ .++.+|+|...+-..++.|-+.|+|..
T Consensus 15 ~s~~e----La~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 15 GKTAE----IAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp CCHHH----HHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 55544 455679999999999999999999985
No 117
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=28.52 E-value=47 Score=27.25 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=37.2
Q ss_pred HHHHHHHHhc-CC-CCcCchhHHHHHhhcCCeEEEcC---CCeeecchhHHHHHHhh
Q psy8714 491 SELISLMEKH-GI-GTDASIPVHINNICQRNYVTVTS---GRRLVPTSLGIVLVHGY 542 (562)
Q Consensus 491 ~~Li~~Me~~-GI-GTpATra~iI~~L~~r~Yi~~~~---~k~l~~T~~G~~li~~l 542 (562)
.++++.+++. |+ =.+.|--.++.+|.+.|||.... .+.+..|+.|+...+.+
T Consensus 28 ~~i~~ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~~ 84 (99)
T 2co5_A 28 KRLRSEILKRFDIDISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEEL 84 (99)
T ss_dssp GGHHHHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHHHHH
Confidence 3566666543 21 14677778999999999998632 35799999999877554
No 118
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=27.99 E-value=43 Score=31.31 Aligned_cols=40 Identities=5% Similarity=0.119 Sum_probs=32.6
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeecCCCCCCCCCc
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPEN 342 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYPRTds~~l~~~ 342 (562)
.+.++.+|+|+.-+-.+.++|-++|||++-+.-.-+|++.
T Consensus 24 ~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~~~i~LT~~ 63 (214)
T 3hrs_A 24 KEIAQLMQVSPPAVTEMMKKLLAEELLIKDKKAGYLLTDL 63 (214)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECHH
T ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCEEEecCCCeEECHH
Confidence 4566778999999999999999999999977544456654
No 119
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=27.93 E-value=44 Score=28.21 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=27.9
Q ss_pred CCC-CCHHHHHHHHHhhCCCCHHHHHHHHHHhHhcCceee
Q psy8714 293 PQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSY 331 (562)
Q Consensus 293 P~p-f~l~~Lq~~a~~~~g~s~~~tl~iaQ~LYE~glISY 331 (562)
|.| .+..+| ++.+|+|...+...++.|.++|+|.-
T Consensus 39 ~~~~~t~~eL----a~~l~~s~sTV~r~L~~L~~~GlV~r 74 (123)
T 3r0a_A 39 PDRWIDTDAL----SKSLKLDVSTVQRSVKKLHEKEILQR 74 (123)
T ss_dssp TTCCEEHHHH----HHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCcCHHHH----HHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 345 555554 55668999999999999999999974
No 120
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=27.48 E-value=48 Score=26.32 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=25.0
Q ss_pred HHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 305 ASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 305 a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
.++.+|+|..-+-.+++.|-++|+|..-+
T Consensus 42 la~~l~is~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 42 LADIFKLSKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCeEeec
Confidence 44567999999999999999999998654
No 121
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=27.30 E-value=68 Score=25.17 Aligned_cols=54 Identities=17% Similarity=0.040 Sum_probs=37.5
Q ss_pred chHHHHHhhcccCCeEEEecCCCccchhHHHHHHHHHhhhcccCCCCcEEEEEecccCHHHHHHHHHh
Q psy8714 95 KLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWN 162 (562)
Q Consensus 95 ~~i~~L~~~~~~~d~Ii~AtD~DREGE~I~~~i~~~~~~~~~~~~~~~v~Rl~~sslt~~~I~~A~~n 162 (562)
.+++.|++ .++..||+|.|+|. .+-.++..+|... +.|+. ++. +..++=+|...
T Consensus 18 ~v~kai~~--gkaklViiA~D~~~---~~~~~i~~lc~~~-----~Ip~~--~v~--sk~eLG~a~Gk 71 (82)
T 3v7e_A 18 QTVKALKR--GSVKEVVVAKDADP---ILTSSVVSLAEDQ-----GISVS--MVE--SMKKLGKACGI 71 (82)
T ss_dssp HHHHHHTT--TCEEEEEEETTSCH---HHHHHHHHHHHHH-----TCCEE--EES--CHHHHHHHHTC
T ss_pred HHHHHHHc--CCeeEEEEeCCCCH---HHHHHHHHHHHHc-----CCCEE--EEC--CHHHHHHHhCC
Confidence 45666665 67889999999998 3667787777543 45663 233 77777777654
No 122
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=26.90 E-value=55 Score=27.34 Aligned_cols=30 Identities=13% Similarity=-0.022 Sum_probs=25.8
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeec
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYP 332 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYP 332 (562)
.+.++.+|+|+..+..+.+.|-++|||+--
T Consensus 54 ~ela~~l~~s~~~vs~~l~~Le~~glv~r~ 83 (142)
T 2fbi_A 54 YQLANQACILRPSMTGVLARLERDGIVRRW 83 (142)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 345667899999999999999999999864
No 123
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=26.64 E-value=53 Score=26.17 Aligned_cols=30 Identities=13% Similarity=0.028 Sum_probs=26.3
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeec
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYP 332 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYP 332 (562)
.+.++.+|+|...+-..+.+|-+.|+|.+-
T Consensus 34 ~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 34 AQLTRQLNMEKREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp HHHHHHSSSCHHHHHHHHHHHHHHTSSEEC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 446788999999999999999999999883
No 124
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=26.63 E-value=46 Score=29.99 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=28.5
Q ss_pred HHHHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 302 MRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 302 q~~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
|++.+..+|.|+..+..+..+|-+.|+|++-|
T Consensus 166 ~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 197 (216)
T 4ev0_A 166 HHELAALAGTSRETVSRVLHALAEEGVVRLGP 197 (216)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 46667788999999999999999999999865
No 125
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=26.32 E-value=48 Score=29.98 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=28.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 302 MRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 302 q~~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
|++.+..+|.|+..+..+..+|-+.|+|++-|
T Consensus 172 ~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 203 (220)
T 3dv8_A 172 HETIANHLGSHREVITRMLRYFQVEGLVKLSR 203 (220)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCC
Confidence 45666788999999999999999999999865
No 126
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=26.09 E-value=61 Score=26.11 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=27.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHhHhcCcee
Q psy8714 302 MRVASSGLGMGPHHAMQIAERLYTQGYVS 330 (562)
Q Consensus 302 q~~a~~~~g~s~~~tl~iaQ~LYE~glIS 330 (562)
|++..++++++...+-.++++|=++|||.
T Consensus 39 qkeLa~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 39 SRDVRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 67888999999999999999999999997
No 127
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=25.83 E-value=59 Score=27.05 Aligned_cols=30 Identities=17% Similarity=0.177 Sum_probs=25.7
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeec
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYP 332 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYP 332 (562)
.+.++.+|+|+..+..+++.|-++|||.--
T Consensus 56 ~ela~~l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 56 NQLGRLTAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 345567899999999999999999999853
No 128
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=25.64 E-value=58 Score=27.29 Aligned_cols=31 Identities=10% Similarity=0.146 Sum_probs=27.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHhHhcCceeec
Q psy8714 302 MRVASSGLGMGPHHAMQIAERLYTQGYVSYP 332 (562)
Q Consensus 302 q~~a~~~~g~s~~~tl~iaQ~LYE~glISYP 332 (562)
|.+.++.+|+++..+..+++.|-++|||..-
T Consensus 56 ~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 56 LKDIINHLNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 4556678999999999999999999999873
No 129
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=25.23 E-value=51 Score=29.44 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=28.4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 302 MRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 302 q~~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
|.+.+..+|.|+..+..+..+|-+.|+|++-|
T Consensus 167 ~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 198 (207)
T 2oz6_A 167 RQEIGRIVGCSREMVGRVLKSLEEQGLVHVKG 198 (207)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 56667789999999999999999999999865
No 130
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=24.94 E-value=54 Score=27.30 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=25.1
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceee
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSY 331 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISY 331 (562)
.+.++.+|+|+..+..+++.|-++|+|+-
T Consensus 47 ~ela~~l~~s~~tvs~~l~~L~~~glv~~ 75 (138)
T 3bpv_A 47 DELATFFHVDKGTIARTLRRLEESGFIER 75 (138)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 44556679999999999999999999986
No 131
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=24.78 E-value=57 Score=29.10 Aligned_cols=32 Identities=6% Similarity=0.044 Sum_probs=28.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 302 MRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 302 q~~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
|++.+..+|.|+..+..+..+|-+.|+|++.|
T Consensus 142 ~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 173 (195)
T 3b02_A 142 HEEIADATASIRESVSKVLADLRREGLIATAY 173 (195)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHTSEEEET
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 56677889999999999999999999999865
No 132
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=24.46 E-value=60 Score=25.43 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=25.4
Q ss_pred HHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 304 VASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 304 ~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
+.++.+|+|+.-+....+.|-+.|+|..-+
T Consensus 43 ela~~l~is~~tvs~~l~~L~~~glv~~~~ 72 (99)
T 3cuo_A 43 ELTRITGLSASATSQHLARMRDEGLIDSQR 72 (99)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 345567999999999999999999998654
No 133
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=24.39 E-value=71 Score=24.99 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=24.4
Q ss_pred HHHhhCCCCHHHHHHHHHHhHhcCceee
Q psy8714 304 VASSGLGMGPHHAMQIAERLYTQGYVSY 331 (562)
Q Consensus 304 ~a~~~~g~s~~~tl~iaQ~LYE~glISY 331 (562)
+.++.+|+|+.-+....+.|-+.|+|.-
T Consensus 35 ela~~l~is~~tvs~~l~~L~~~gli~~ 62 (100)
T 1ub9_A 35 QIQKVLDLTPGNLDSHIRVLERNGLVKT 62 (100)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4456679999999999999999999983
No 134
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=24.33 E-value=29 Score=28.32 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=0.0
Q ss_pred CcCchhHHHHHhhcCCeEEEcCCCe---eecchhHHHHH
Q psy8714 504 TDASIPVHINNICQRNYVTVTSGRR---LVPTSLGIVLV 539 (562)
Q Consensus 504 TpATra~iI~~L~~r~Yi~~~~~k~---l~~T~~G~~li 539 (562)
+++|-..++..|.+.|||.....+. +.+|+.|...+
T Consensus 47 s~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~ 85 (114)
T 2oqg_A 47 SRQAIAKHLNALQACGLVESVKVGREIRYRALGAELNKT 85 (114)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHH
No 135
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=24.08 E-value=40 Score=29.46 Aligned_cols=39 Identities=8% Similarity=0.014 Sum_probs=29.8
Q ss_pred CcCchhHHHHHhhcCCeEEEc---C---C---CeeecchhHHHHHHhh
Q psy8714 504 TDASIPVHINNICQRNYVTVT---S---G---RRLVPTSLGIVLVHGY 542 (562)
Q Consensus 504 TpATra~iI~~L~~r~Yi~~~---~---~---k~l~~T~~G~~li~~l 542 (562)
++.|--.++.+|.+.|||... . | +.+.+|+.|+...+.+
T Consensus 67 s~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~ 114 (138)
T 2e1n_A 67 SDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDL 114 (138)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHHHHH
T ss_pred CccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECHHHHHHHHHH
Confidence 467777899999999999762 1 2 3499999999876443
No 136
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=23.84 E-value=75 Score=26.64 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=26.2
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
.+.++.+|+|+.-+..+++.|-++|||+.-+
T Consensus 45 ~ela~~l~~~~stvs~~l~~L~~~G~v~r~~ 75 (152)
T 1ku9_A 45 SDIMEELKISKGNVSMSLKKLEELGFVRKVW 75 (152)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3455667999999999999999999998753
No 137
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=23.72 E-value=62 Score=25.55 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=25.1
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeec
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYP 332 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYP 332 (562)
.+.++.+|+|+..+..+++.|-++|+|.--
T Consensus 38 ~ela~~l~is~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 38 SEIARELDLSARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
Confidence 334556799999999999999999999753
No 138
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=23.51 E-value=56 Score=28.68 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=26.2
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
.+.++.+|+|+..+..+++.|-++|||+.-+
T Consensus 63 ~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 93 (168)
T 2nyx_A 63 ATLATLLGVQPSATGRMVDRLVGAELIDRLP 93 (168)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCEEecc
Confidence 4456677999999999999999999998643
No 139
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=23.29 E-value=61 Score=27.02 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=25.0
Q ss_pred HHHhhCCCCHHHHHHHHHHhHhcCceeec
Q psy8714 304 VASSGLGMGPHHAMQIAERLYTQGYVSYP 332 (562)
Q Consensus 304 ~a~~~~g~s~~~tl~iaQ~LYE~glISYP 332 (562)
+.++.+|+|+..+..++++|-++|||+--
T Consensus 53 ~la~~l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 53 ELKKVLSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHCCChHHHHHHHHHHHHCCCEEec
Confidence 34467899999999999999999999863
No 140
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=23.22 E-value=38 Score=30.07 Aligned_cols=36 Identities=8% Similarity=0.008 Sum_probs=28.3
Q ss_pred CcCchhHHHHHhhcCCeEEEc---C---C---CeeecchhHHHHH
Q psy8714 504 TDASIPVHINNICQRNYVTVT---S---G---RRLVPTSLGIVLV 539 (562)
Q Consensus 504 TpATra~iI~~L~~r~Yi~~~---~---~---k~l~~T~~G~~li 539 (562)
++.|--.++.+|.+.|||... . | +.+.+|+.|+...
T Consensus 77 s~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l 121 (148)
T 2zfw_A 77 SDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRS 121 (148)
T ss_dssp CSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCSTT
T ss_pred ChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHHH
Confidence 467788899999999999862 1 2 4599999998754
No 141
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=23.17 E-value=78 Score=26.14 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 295 ALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 295 pf~l~~Lq~~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
|.+..+|...++...|+++.-+..++..|-++|||+--|
T Consensus 24 ~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 24 SVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp SEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 356788888887667899999999999999999998765
No 142
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=23.17 E-value=58 Score=30.44 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=30.9
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeecCCCCCCCCCc
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPEN 342 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYPRTds~~l~~~ 342 (562)
++.++.+|+|+..+-...+.|-++|||+|-+ ---.|++.
T Consensus 34 ~~LA~~LgvS~~SV~~~lkkL~e~GLV~~~~-~Gv~LTe~ 72 (200)
T 2p8t_A 34 KQISERLELGEGSVRTLLRKLSHLDIIRSKQ-RGHFLTLK 72 (200)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEC---CEEECHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCEEEeC-CCeEECHH
Confidence 4456778999999999999999999999988 44556653
No 143
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=23.15 E-value=71 Score=26.93 Aligned_cols=31 Identities=10% Similarity=0.066 Sum_probs=26.3
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
.+.++.+|+|...+..+++.|-++|||+--+
T Consensus 54 ~~la~~l~i~~~~vs~~l~~Le~~glv~r~~ 84 (147)
T 2hr3_A 54 SELAAAERMRSSNLAALLRELERGGLIVRHA 84 (147)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCEeeCC
Confidence 4456678999999999999999999997643
No 144
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=23.12 E-value=61 Score=27.35 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=26.0
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
.+.++.+|+++..+..++++|-++|||+--+
T Consensus 54 ~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 54 KKLGERVFLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHCCChhhHHHHHHHHHHCCCeEecC
Confidence 3455667999999999999999999998644
No 145
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=22.96 E-value=61 Score=28.99 Aligned_cols=32 Identities=16% Similarity=0.066 Sum_probs=28.4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 302 MRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 302 q~~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
|++.+..+|.|+..+..+..+|-+.|+|++-|
T Consensus 170 ~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 201 (210)
T 3ryp_A 170 RQEIGQIVGCSRETVGRILKMLEDQNLISAHG 201 (210)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHCCcEEeCC
Confidence 56667788999999999999999999999865
No 146
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=22.94 E-value=62 Score=27.17 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=25.2
Q ss_pred HHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 304 VASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 304 ~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
+.++.+|+|+.-+..+++.|-++|||+--+
T Consensus 57 ~la~~l~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 57 ELAQSVGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHhCCChhhHHHHHHHHHHCCCeeecC
Confidence 344567999999999999999999998643
No 147
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=22.88 E-value=64 Score=29.50 Aligned_cols=32 Identities=6% Similarity=0.048 Sum_probs=27.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 302 MRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 302 q~~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
|++.+..+|.|+..+..+..+|-+.|+|++-|
T Consensus 178 ~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 209 (231)
T 3e97_A 178 TQDIMARTSSSRETVSRVLKRLEAHNILEVSP 209 (231)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHCCcEEecC
Confidence 34556678999999999999999999999865
No 148
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=22.73 E-value=61 Score=29.48 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=28.3
Q ss_pred HHHHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 302 MRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 302 q~~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
|.+.+..+|.|+..+..+..+|-+.|+|++-|
T Consensus 190 ~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 221 (230)
T 3iwz_A 190 RQELARLVGCSREMAGRVLKKLQADGLLHARG 221 (230)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHCCCEEECC
Confidence 45666788999999999999999999999865
No 149
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=22.71 E-value=66 Score=27.14 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=26.7
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
.++++.+|+|+.-+..+.+.|-++|||..-+
T Consensus 35 ~ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 35 NRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 4456678999999999999999999998755
No 150
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=22.56 E-value=63 Score=27.11 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=24.8
Q ss_pred HHHhhCCCCHHHHHHHHHHhHhcCceeec
Q psy8714 304 VASSGLGMGPHHAMQIAERLYTQGYVSYP 332 (562)
Q Consensus 304 ~a~~~~g~s~~~tl~iaQ~LYE~glISYP 332 (562)
+.++.+|+|+..+..+++.|-++|+|+--
T Consensus 52 ~la~~l~~s~~tvs~~l~~L~~~glv~r~ 80 (145)
T 2a61_A 52 ELSVLLGVAKSTVTGLVKRLEADGYLTRT 80 (145)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 34556799999999999999999999864
No 151
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=22.43 E-value=57 Score=29.61 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=28.5
Q ss_pred HHHHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 302 MRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 302 q~~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
|++.+..+|.|+..+..+..+|-+.|+|++-|
T Consensus 181 ~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 212 (227)
T 3dkw_A 181 KQLVAGHLSIQPETFSRIMHRLGDEGIIHLDG 212 (227)
T ss_dssp THHHHHHTTSCHHHHHHHHHHHHHHTSEEESS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCcEEecC
Confidence 46667789999999999999999999999865
No 152
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=22.39 E-value=48 Score=26.26 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=24.6
Q ss_pred HHHHhhCCCCHHH-HHHHHHHhHhcCcee
Q psy8714 303 RVASSGLGMGPHH-AMQIAERLYTQGYVS 330 (562)
Q Consensus 303 ~~a~~~~g~s~~~-tl~iaQ~LYE~glIS 330 (562)
.+.++.+|+|+.- +..+.+.|-++|||.
T Consensus 34 ~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 34 AEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp HHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 4456677999999 999999999999999
No 153
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=22.27 E-value=65 Score=28.84 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=28.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 302 MRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 302 q~~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
|++.+..+|.|+..+..+..+|-+.|+|++-|
T Consensus 149 ~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 180 (202)
T 2zcw_A 149 HDELAAAVGSVRETVTKVIGELAREGYIRSGY 180 (202)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCC
Confidence 45667788999999999999999999999765
No 154
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=22.26 E-value=65 Score=26.88 Aligned_cols=35 Identities=11% Similarity=0.121 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 295 ALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 295 pf~l~~Lq~~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
+.+.++| ++.+|+|+..+..+++.|-++|||.--+
T Consensus 50 ~~~~~el----a~~l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 50 EVLQRDL----ESEFSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp CCBHHHH----HHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHH----HHHHCCCcchHHHHHHHHHHCCCEEeeC
Confidence 4555554 4567999999999999999999998643
No 155
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=22.13 E-value=66 Score=26.83 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=25.2
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeec
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYP 332 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYP 332 (562)
.+.++.+|+|+..+..+.+.|-++|+|.--
T Consensus 49 ~ela~~l~is~~~vs~~l~~L~~~gli~~~ 78 (142)
T 3bdd_A 49 LALQERLQIDRAAVTRHLKLLEESGYIIRK 78 (142)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 344566799999999999999999999753
No 156
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=22.00 E-value=74 Score=27.23 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=25.8
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeec
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYP 332 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYP 332 (562)
.+.++.+|+|...+..+++.|-++|||+--
T Consensus 62 ~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 62 KEIAEFLSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 345567899999999999999999999864
No 157
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=21.73 E-value=79 Score=26.52 Aligned_cols=30 Identities=10% Similarity=0.001 Sum_probs=25.7
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeec
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYP 332 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYP 332 (562)
.+.++.+|+|+.-+..+++.|-++|||+--
T Consensus 54 ~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 83 (146)
T 2gxg_A 54 AYLANRYFVTQSAITASVDKLEEMGLVVRV 83 (146)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhCCCchhHHHHHHHHHHCCCEEee
Confidence 445567899999999999999999999854
No 158
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=21.66 E-value=68 Score=27.05 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=26.5
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeecCC
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYPRT 334 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYPRT 334 (562)
.+.++.+|+|+..+..++++|-++|||+--+.
T Consensus 54 ~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~ 85 (144)
T 3f3x_A 54 VYLANRYFVTQSAITAAVDKLEAKGLVRRIRD 85 (144)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCEEeccC
Confidence 34456679999999999999999999986443
No 159
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=21.23 E-value=80 Score=26.94 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=26.3
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
.+.++.+|++...+..++..|-++|||+--+
T Consensus 61 ~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 61 TRLAKLSLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 4456678999999999999999999998643
No 160
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=21.21 E-value=70 Score=26.92 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=25.2
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
.+.++.+|+|+.-+..++..|-++|||+--+
T Consensus 55 ~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 55 SELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 4455667999999999999999999998644
No 161
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=20.94 E-value=79 Score=28.83 Aligned_cols=32 Identities=6% Similarity=0.036 Sum_probs=28.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 302 MRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 302 q~~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
|++.+..+|.|+..+..+..+|-+.|+|++-|
T Consensus 183 ~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 214 (232)
T 2gau_A 183 REELATLSNMTVSNAIRTLSTFVSERMLALDG 214 (232)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCEeeCC
Confidence 56667789999999999999999999999865
No 162
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=20.91 E-value=72 Score=26.84 Aligned_cols=30 Identities=7% Similarity=-0.071 Sum_probs=25.2
Q ss_pred HHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 304 VASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 304 ~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
+.++.+|+++.-+..+++.|-++|||+--+
T Consensus 56 eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 56 EIALWTKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHCCCHhhHHHHHHHHHHCCCeeccC
Confidence 345567999999999999999999998543
No 163
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.84 E-value=1.8e+02 Score=23.48 Aligned_cols=41 Identities=7% Similarity=0.101 Sum_probs=29.0
Q ss_pred chHHHHHhhcccCCeEEEecCCCccchhHHHHHHHHHhhhcccCCCCcEEE
Q psy8714 95 KLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWR 145 (562)
Q Consensus 95 ~~i~~L~~~~~~~d~Ii~AtD~DREGE~I~~~i~~~~~~~~~~~~~~~v~R 145 (562)
++.+.|++ .++..||+|.|++ +.+-.+|..+|.. .+.|+..
T Consensus 22 ~v~kai~~--gka~lViiA~D~~---~~~~~~i~~~c~~-----~~ip~~~ 62 (99)
T 3j21_Z 22 ETIRLAKT--GGAKLIIVAKNAP---KEIKDDIYYYAKL-----SDIPVYE 62 (99)
T ss_dssp HHHHHHHH--TCCSEEEEECCCC---HHHHHHHHHHHHH-----TTCCEEE
T ss_pred HHHHHHHc--CCccEEEEeCCCC---HHHHHHHHHHHHH-----cCCCEEE
Confidence 46677765 6889999999976 5566777777754 2566643
No 164
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=20.73 E-value=73 Score=26.73 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=25.7
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeec
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYP 332 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYP 332 (562)
.+.++.+|+|+..+..+++.|-++|+|.--
T Consensus 47 ~~la~~l~~s~~~vs~~l~~Le~~gli~r~ 76 (144)
T 1lj9_A 47 EKIAELIKVDRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 445567799999999999999999999763
No 165
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=20.66 E-value=60 Score=25.45 Aligned_cols=50 Identities=8% Similarity=0.226 Sum_probs=34.8
Q ss_pred CHHHHHHHHHhcCCCCcCchhHHHHHhhcCCeEEEc-CC--CeeecchhHH-HHHHhh
Q psy8714 489 TESELISLMEKHGIGTDASIPVHINNICQRNYVTVT-SG--RRLVPTSLGI-VLVHGY 542 (562)
Q Consensus 489 Te~~Li~~Me~~GIGTpATra~iI~~L~~r~Yi~~~-~~--k~l~~T~~G~-~li~~l 542 (562)
|-.+|-+.+ |+ +++|-..++..|.+.|||... .| ..+.+|+.|. .+++.+
T Consensus 40 s~~ela~~l---~i-s~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~~~l 93 (99)
T 3cuo_A 40 SAGELTRIT---GL-SASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATL 93 (99)
T ss_dssp EHHHHHHHH---CC-CHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHHHHH
T ss_pred CHHHHHHHH---Cc-CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHH
Confidence 444444444 67 677888999999999999863 23 2478898885 455554
No 166
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=20.66 E-value=71 Score=27.20 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=25.5
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeec
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYP 332 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYP 332 (562)
.+.++.+|+|+..+..+++.|-++|||+--
T Consensus 55 ~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 84 (155)
T 1s3j_A 55 SEIAERMEVKPSAVTLMADRLEQKNLIART 84 (155)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 345567799999999999999999999753
No 167
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=20.62 E-value=73 Score=26.95 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=25.6
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeec
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYP 332 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYP 332 (562)
.+.++.+|+|...+..+++.|-++|||..-
T Consensus 60 ~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 60 GELSNKMYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 344566799999999999999999999863
No 168
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=20.57 E-value=77 Score=26.84 Aligned_cols=39 Identities=13% Similarity=0.274 Sum_probs=29.9
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeecCCCCCCCCC
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPE 341 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYPRTds~~l~~ 341 (562)
.+.++.+|+|+.-+..+++.|-++|||..-|.-.-+|++
T Consensus 26 ~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~~~~~~LT~ 64 (142)
T 1on2_A 26 SDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTS 64 (142)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEEECH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCEEEeeCceEEEch
Confidence 345567899999999999999999999876532234444
No 169
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=20.41 E-value=76 Score=29.76 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=31.6
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeecCCCCCCCCCc
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPEN 342 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYPRTds~~l~~~ 342 (562)
.+.++.+|+|+.-+-.+.++|-++|||++-+--.-+|++.
T Consensus 28 ~~la~~l~vs~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~ 67 (226)
T 2qq9_A 28 ARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPT 67 (226)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEECHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCCeEECHH
Confidence 4566788999999999999999999999965423345553
No 170
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=20.33 E-value=75 Score=29.96 Aligned_cols=32 Identities=16% Similarity=0.066 Sum_probs=28.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHhHhcCceeecC
Q psy8714 302 MRVASSGLGMGPHHAMQIAERLYTQGYVSYPR 333 (562)
Q Consensus 302 q~~a~~~~g~s~~~tl~iaQ~LYE~glISYPR 333 (562)
|.+.+..+|.|+..+..+..+|-+.|+|++-|
T Consensus 220 ~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~ 251 (260)
T 3kcc_A 220 RQEIGQIVGCSRETVGRILKMLEDQNLISAHG 251 (260)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCEEEcC
Confidence 45666788999999999999999999999855
No 171
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=20.28 E-value=75 Score=26.95 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=25.4
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeec
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYP 332 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYP 332 (562)
.+.++.+|+|+..+..+++.|-++|||.--
T Consensus 58 ~ela~~l~~~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 58 PQLGAALQMKRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCeeec
Confidence 345566799999999999999999999753
No 172
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=20.27 E-value=2e+02 Score=24.53 Aligned_cols=55 Identities=9% Similarity=0.078 Sum_probs=38.8
Q ss_pred chHHHHHhhcccCCeEEEecCCCccchhHHHHHHHHHhhhcccCCCCcEEEEEecccCHHHHHHHHHh
Q psy8714 95 KLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWN 162 (562)
Q Consensus 95 ~~i~~L~~~~~~~d~Ii~AtD~DREGE~I~~~i~~~~~~~~~~~~~~~v~Rl~~sslt~~~I~~A~~n 162 (562)
++++.|++ .++..||+|.|++.. +-.+|..++... +.+|.- + ..|..++=.|+-.
T Consensus 34 ~v~kaIr~--gkakLVIiA~Das~~---~~~ki~~~~~~~-----~~~V~~--~-~~sk~eLG~A~Gk 88 (125)
T 3vi6_A 34 QTLKMIRQ--GKAKLVILANNCPAL---RKSEIEYYAMLA-----KTGVHH--Y-SGNNIELGTACGK 88 (125)
T ss_dssp HHHHHHHT--TCCSEEEECTTSCHH---HHHHHHHHHHHT-----TCEEEE--C-SSCHHHHHHHTTC
T ss_pred HHHHHHHc--CCceEEEEeCCCCHH---HHHHHHHHHHHh-----CCCcEE--E-cCCHHHHHHHhCC
Confidence 46677765 578999999999984 556776555321 456653 3 6688888888865
No 173
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=20.11 E-value=74 Score=27.40 Aligned_cols=30 Identities=10% Similarity=-0.034 Sum_probs=25.3
Q ss_pred HHHHhhCCCCHHHHHHHHHHhHhcCceeec
Q psy8714 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYP 332 (562)
Q Consensus 303 ~~a~~~~g~s~~~tl~iaQ~LYE~glISYP 332 (562)
.+.++.+|+|..-+..+++.|-++|||.--
T Consensus 70 ~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 70 GTLGIFAVVEQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 344566799999999999999999999753
No 174
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=20.05 E-value=87 Score=27.05 Aligned_cols=31 Identities=10% Similarity=0.057 Sum_probs=26.3
Q ss_pred HHHhhCCCCHHHHHHHHHHhHhcCceeecCC
Q psy8714 304 VASSGLGMGPHHAMQIAERLYTQGYVSYPRT 334 (562)
Q Consensus 304 ~a~~~~g~s~~~tl~iaQ~LYE~glISYPRT 334 (562)
+.++.+|+++.-+..++.+|-++|||+--+.
T Consensus 72 eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~ 102 (161)
T 3e6m_A 72 QLATLGVMEQSTTSRTVDQLVDEGLAARSIS 102 (161)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTSEEECC-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEEeeCC
Confidence 4456789999999999999999999987553
Done!