Your job contains 1 sequence.
>psy8714
MHLRVKKLVPASEIKLARPSLISLLTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHI
MGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEG
ENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQEL
DLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD
LTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVE
LMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGD
HVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLV
YTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVER
KTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVH
GYQKIDRELVEPTMRSAYRVQA
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8714
(562 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|O95985 - symbol:TOP3B "DNA topoisomerase 3-beta... 1776 4.7e-183 1
RGD|1309468 - symbol:Top3b "topoisomerase (DNA) III beta"... 1769 2.6e-182 1
MGI|MGI:1333803 - symbol:Top3b "topoisomerase (DNA) III b... 1763 1.1e-181 1
UNIPROTKB|Q5ZK71 - symbol:TOP3B "DNA topoisomerase" speci... 1757 4.8e-181 1
UNIPROTKB|E2R770 - symbol:TOP3B "DNA topoisomerase" speci... 1756 6.1e-181 1
UNIPROTKB|F1RL05 - symbol:TOP3B "DNA topoisomerase" speci... 1755 7.8e-181 1
UNIPROTKB|E1BQG8 - symbol:TOP3B "DNA topoisomerase" speci... 1748 4.3e-180 1
ZFIN|ZDB-GENE-070705-37 - symbol:top3b "topoisomerase (DN... 1740 3.0e-179 1
FB|FBgn0026015 - symbol:Top3beta "Topoisomerase 3beta" sp... 1728 5.7e-178 1
WB|WBGene00012995 - symbol:Y48C3A.14 species:6239 "Caenor... 1554 1.6e-159 1
TAIR|locus:2045517 - symbol:AT2G32000 species:3702 "Arabi... 1465 4.2e-150 1
UNIPROTKB|H0Y6W0 - symbol:TOP3B "DNA topoisomerase" speci... 1180 6.7e-120 1
UNIPROTKB|E2RIS5 - symbol:TOP3A "DNA topoisomerase" speci... 987 1.9e-99 1
UNIPROTKB|F1MGY1 - symbol:TOP3A "DNA topoisomerase" speci... 986 2.4e-99 1
MGI|MGI:1197527 - symbol:Top3a "topoisomerase (DNA) III a... 976 2.8e-98 1
UNIPROTKB|Q13472 - symbol:TOP3A "DNA topoisomerase 3-alph... 971 9.4e-98 1
UNIPROTKB|F1P1F3 - symbol:TOP3A "DNA topoisomerase" speci... 953 7.6e-96 1
ZFIN|ZDB-GENE-071212-2 - symbol:top3a "topoisomerase (DNA... 944 6.8e-95 1
WB|WBGene00006596 - symbol:top-3 species:6239 "Caenorhabd... 927 4.3e-93 1
UNIPROTKB|B4DK80 - symbol:TOP3A "DNA topoisomerase" speci... 892 2.2e-89 1
FB|FBgn0040268 - symbol:Top3alpha "Topoisomerase 3alpha" ... 891 3.6e-89 1
TAIR|locus:2160841 - symbol:TOP3A "topoisomerase 3alpha" ... 882 2.5e-88 1
DICTYBASE|DDB_G0275257 - symbol:top3 "DNA topoisomerase I... 578 1.2e-87 2
GENEDB_PFALCIPARUM|PF13_0251 - symbol:PF13_0251 "DNA topo... 480 5.2e-86 2
UNIPROTKB|Q8IDM7 - symbol:PF13_0251 "DNA topoisomerase II... 480 5.2e-86 2
RGD|1309320 - symbol:Top3a "topoisomerase (DNA) III alpha... 847 1.3e-84 1
CGD|CAL0003329 - symbol:orf19.5934 species:5476 "Candida ... 820 9.4e-82 1
ASPGD|ASPL0000072189 - symbol:AN4555 species:162425 "Emer... 798 2.0e-79 1
UNIPROTKB|C9JEI7 - symbol:TOP3B "DNA topoisomerase 3-beta... 779 2.1e-77 1
POMBASE|SPBC16G5.12c - symbol:top3 "DNA topoisomerase III... 751 1.9e-74 1
UNIPROTKB|E7EWY2 - symbol:TOP3B "DNA topoisomerase" speci... 737 5.9e-73 1
UNIPROTKB|H7BZN5 - symbol:TOP3A "DNA topoisomerase" speci... 669 9.4e-66 1
SGD|S000004224 - symbol:TOP3 "DNA Topoisomerase III" spec... 315 1.6e-47 2
UNIPROTKB|H7C4B0 - symbol:TOP3B "DNA topoisomerase" speci... 419 2.9e-39 1
UNIPROTKB|F2Z2A5 - symbol:TOP3B "DNA topoisomerase 3-beta... 368 1.4e-33 1
UNIPROTKB|C9JT00 - symbol:TOP3B "DNA topoisomerase 3-beta... 333 1.3e-29 1
UNIPROTKB|C9JKE2 - symbol:TOP3B "DNA topoisomerase 3-beta... 327 5.8e-29 1
TIGR_CMR|BA_0375 - symbol:BA_0375 "DNA topoisomerase III"... 325 2.8e-26 1
TIGR_CMR|CJE_1854 - symbol:CJE_1854 "DNA topoisomerase I"... 305 4.5e-24 1
TIGR_CMR|BA_1905 - symbol:BA_1905 "DNA topoisomerase III"... 282 1.4e-23 2
UNIPROTKB|P06612 - symbol:topA species:83333 "Escherichia... 298 4.3e-23 1
TIGR_CMR|SO_2705 - symbol:SO_2705 "DNA topoisomerase I" s... 298 4.4e-23 1
UNIPROTKB|Q9KRB2 - symbol:topA "DNA topoisomerase 1" spec... 284 1.5e-21 1
TIGR_CMR|VC_1730 - symbol:VC_1730 "DNA topoisomerase I" s... 284 1.5e-21 1
UNIPROTKB|K7EMT6 - symbol:TOP3A "DNA topoisomerase 3-alph... 247 3.4e-20 1
TIGR_CMR|CPS_1197 - symbol:CPS_1197 "DNA topoisomerase I"... 266 1.6e-19 1
TIGR_CMR|APH_0597 - symbol:APH_0597 "DNA topoisomerase I"... 244 3.4e-17 1
TIGR_CMR|SPO_3079 - symbol:SPO_3079 "DNA topoisomerase I"... 210 4.4e-17 2
TIGR_CMR|NSE_0594 - symbol:NSE_0594 "DNA topoisomerase I"... 150 2.7e-16 2
TIGR_CMR|ECH_0750 - symbol:ECH_0750 "DNA topoisomerase I"... 223 6.9e-15 1
UNIPROTKB|P14294 - symbol:topB species:83333 "Escherichia... 215 3.6e-14 1
UNIPROTKB|B4DSJ0 - symbol:TOP3A "cDNA FLJ56242, highly si... 212 5.0e-14 1
TIGR_CMR|CBU_2000 - symbol:CBU_2000 "DNA topoisomerase I"... 133 2.7e-13 2
TIGR_CMR|CHY_1794 - symbol:CHY_1794 "DNA topoisomerase I"... 201 1.4e-12 1
TIGR_CMR|CPS_4792 - symbol:CPS_4792 "DNA topoisomerase II... 155 2.3e-12 2
TIGR_CMR|SO_3061 - symbol:SO_3061 "DNA topoisomerase III"... 169 1.7e-10 2
TIGR_CMR|BA_3971 - symbol:BA_3971 "DNA topoisomerase I" s... 171 2.5e-09 1
TIGR_CMR|GSU_2549 - symbol:GSU_2549 "DNA topoisomerase I"... 170 3.7e-09 1
UNIPROTKB|P0A620 - symbol:topA "DNA topoisomerase 1" spec... 109 3.2e-08 2
UNIPROTKB|K7ELI7 - symbol:TOP3A "DNA topoisomerase 3-alph... 117 3.6e-06 1
TIGR_CMR|DET_0717 - symbol:DET_0717 "DNA topoisomerase I"... 142 3.7e-06 1
UNIPROTKB|C9J9X4 - symbol:TOP3B "DNA topoisomerase 3-beta... 113 9.6e-06 1
UNIPROTKB|Q9KQF5 - symbol:topB "DNA topoisomerase 3" spec... 137 1.2e-05 1
TIGR_CMR|VC_2043 - symbol:VC_2043 "DNA topoisomerase III"... 137 1.2e-05 1
UNIPROTKB|C9JEQ1 - symbol:TOP3B "DNA topoisomerase 3-beta... 110 2.0e-05 1
>UNIPROTKB|O95985 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0003677 "DNA binding" evidence=TAS] [GO:0003916
"DNA topoisomerase activity" evidence=TAS] [GO:0005634 "nucleus"
evidence=TAS] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0007059
GO:GO:0000793 GO:GO:0006265 PROSITE:PS50880 SMART:SM00493
GO:GO:0003916 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
KO:K03165 EMBL:AF053082 EMBL:D87012 EMBL:AF017146 EMBL:AF125216
EMBL:CR456596 EMBL:BC002432 IPI:IPI00216815 IPI:IPI00216816
IPI:IPI00292671 RefSeq:NP_003926.1 UniGene:Hs.436401
ProteinModelPortal:O95985 SMR:O95985 IntAct:O95985
MINT:MINT-1458306 STRING:O95985 PhosphoSite:O95985 PaxDb:O95985
PRIDE:O95985 DNASU:8940 Ensembl:ENST00000357179
Ensembl:ENST00000398793 GeneID:8940 KEGG:hsa:8940 UCSC:uc002zvs.3
CTD:8940 GeneCards:GC22M022309 HGNC:HGNC:11993 HPA:CAB009198
MIM:603582 neXtProt:NX_O95985 PharmGKB:PA36674 HOGENOM:HOG000184378
HOVERGEN:HBG059857 InParanoid:O95985 OMA:GNKERDE OrthoDB:EOG4ZPDTK
PhylomeDB:O95985 ChEMBL:CHEMBL3127 GenomeRNAi:8940 NextBio:33622
ArrayExpress:O95985 Bgee:O95985 CleanEx:HS_TOP3B
Genevestigator:O95985 GermOnline:ENSG00000100038 Uniprot:O95985
Length = 862
Score = 1776 (630.2 bits), Expect = 4.7e-183, P = 4.7e-183
Identities = 339/536 (63%), Positives = 400/536 (74%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKAHGGEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+SL
Sbjct: 152 FSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 272 MFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E+FT K +L PG
Sbjct: 392 PMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT VM W ++ ES+P + GD P+ VKM+E++T PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEVMPWQSVPLEESLPTCQRGDAFPVGEVKMLEKQTNPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>RGD|1309468 [details] [associations]
symbol:Top3b "topoisomerase (DNA) III beta" species:10116
"Rattus norvegicus" [GO:0000793 "condensed chromosome"
evidence=IEA;ISO] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0007059 "chromosome segregation" evidence=IEA;ISO]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 RGD:1309468
InterPro:IPR006171 GO:GO:0007059 GO:GO:0000793 EMBL:CH473999
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 GeneTree:ENSGT00530000063430 KO:K03165 CTD:8940
OrthoDB:EOG4ZPDTK OMA:QMFLNIT IPI:IPI00370440 RefSeq:NP_001099331.1
UniGene:Rn.23773 Ensembl:ENSRNOT00000002524 GeneID:287930
KEGG:rno:287930 NextBio:627240 Uniprot:D4A9Z2
Length = 862
Score = 1769 (627.8 bits), Expect = 2.6e-182, P = 2.6e-182
Identities = 334/536 (62%), Positives = 402/536 (75%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVH++ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHKYTGTFAGQPVHFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N N KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGRGCDYVVLWLDCDKEGENICFEVLDAVLPVLNNAHNGEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+SL
Sbjct: 152 FSSITDTDICNAMTRLTEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L ++ + ++ + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKEESLLLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ+AERLYTQ
Sbjct: 272 MFLNMTKLEKEAWVEATSKKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQVAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+++L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGSLRQQANHPYWADSVKQLLAEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E FT K ++ PG
Sbjct: 392 PMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPEHFTCMGKTVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD + VKM+E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSVPLEESLPTCQKGDTFTVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV +GRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVTVENGRRLKPTNLGIVLVHGYHKIDAELVLPTIRSAVEKQ 567
>MGI|MGI:1333803 [details] [associations]
symbol:Top3b "topoisomerase (DNA) III beta" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IMP]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 UniProt:Q9Z321 Pfam:PF01751 MGI:MGI:1333803
InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0000793
GO:GO:0006265 PROSITE:PS50880 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
GeneTree:ENSGT00530000063430 KO:K03165 CTD:8940
HOGENOM:HOG000184378 HOVERGEN:HBG059857 OMA:GNKERDE
OrthoDB:EOG4ZPDTK EMBL:AB013603 EMBL:BC031723 IPI:IPI00131337
RefSeq:NP_035754.1 UniGene:Mm.326089 ProteinModelPortal:Q9Z321
SMR:Q9Z321 STRING:Q9Z321 PhosphoSite:Q9Z321 PaxDb:Q9Z321
PRIDE:Q9Z321 Ensembl:ENSMUST00000023465 Ensembl:ENSMUST00000119787
GeneID:21976 KEGG:mmu:21976 InParanoid:Q9Z321 ChiTaRS:TOP3B
NextBio:301682 Bgee:Q9Z321 CleanEx:MM_TOP3B Genevestigator:Q9Z321
GermOnline:ENSMUSG00000022779
Length = 862
Score = 1763 (625.7 bits), Expect = 1.1e-181, P = 1.1e-181
Identities = 336/536 (62%), Positives = 401/536 (74%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVH++ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHKYTGTFAGQPVHFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N N KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGRGCDYVVLWLDCDKEGENICFEVLDAVLPVMNNAHNGEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+SL
Sbjct: 152 FSSITDTDICNAMTRLSEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGV-AVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L ++ + ++ + W R +FD
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKEESLLLDWDRVRVFDWEIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQIAERLYTQ
Sbjct: 272 MFLNMTKLEKEAWVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQIAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+++L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGSLRQQANHPYWADSVKQLLAEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E FT K ++ PG
Sbjct: 392 PMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPEHFTCMGKTVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD + VKM+E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSVPLEESLPTCQKGDTFTVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>UNIPROTKB|Q5ZK71 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9031 "Gallus
gallus" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 eggNOG:COG0550 GeneTree:ENSGT00530000063430
KO:K03165 CTD:8940 HOGENOM:HOG000184378 HOVERGEN:HBG059857
OrthoDB:EOG4ZPDTK EMBL:AADN02034767 EMBL:AB215105 EMBL:AJ720213
IPI:IPI00570659 RefSeq:NP_001006181.1 UniGene:Gga.16362
STRING:Q5ZK71 Ensembl:ENSGALT00000002250 GeneID:416771
KEGG:gga:416771 NextBio:20820183 Uniprot:Q5ZK71
Length = 862
Score = 1757 (623.6 bits), Expect = 4.8e-181, P = 4.8e-181
Identities = 332/537 (61%), Positives = 401/537 (74%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NG CSVHE+ G G FKMTSVCGH+M LDF KYN+WDKVDP ELFS PTEK+E
Sbjct: 32 LNGVCSVHEYTGSFIGQSAHFKMTSVCGHVMTLDFIGKYNSWDKVDPAELFSKAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKT---VWRA 146
A PKL + FL E + C+ +VLWLDCDKEGENICFEV++AV +N SP T ++RA
Sbjct: 92 ANPKLTMVKFLQVEGRGCDSIVLWLDCDKEGENICFEVLDAVLPVMN-KSPSTERMIYRA 150
Query: 147 RFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDAS 206
+FS+ITD DI AM +L +PN+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+S
Sbjct: 151 KFSSITDTDICNAMNHLGEPNLNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSS 210
Query: 207 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVA-VSVTWSRGHIFDKSTC 265
LIS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + +++ W R +FD+
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNPEKESSLTLDWDRVRVFDREIA 270
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
+F + K V V K K +P ALNTVE++RVAS+ LGMGP HAMQIAERLYT
Sbjct: 271 QMFLNITKMAKEAKVESVSKKEKVKQRPLALNTVEMLRVASAALGMGPQHAMQIAERLYT 330
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPI 385
QGY+SYPRTETT YPENFDL LRQQ ++P W + V+ +LS GI++PRKG D GDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGCLRQQANNPYWAETVKALLSEGINRPRKGHDAGDHPPI 390
Query: 386 TPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHP 445
TP K AT +L GD+WRLY+YI RHFI T+ D Y Q FS+ E F K + P
Sbjct: 391 TPMKAATEVELGGDSWRLYEYITRHFIATVSADCKYLQTNISFSIGPERFNCVGKVVTSP 450
Query: 446 GFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGT 504
GFT +M W ++ ES+P + GDL P+ +K++E +T+PPDYLTE+ELI+LMEKHGIGT
Sbjct: 451 GFTEIMPWHSIALEESLPSCEKGDLFPVGEIKLLEMQTSPPDYLTEAELITLMEKHGIGT 510
Query: 505 DASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
DASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 511 DASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>UNIPROTKB|E2R770 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9615 "Canis lupus
familiaris" [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0007059
GO:GO:0000793 GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
KO:K03165 CTD:8940 OMA:GNKERDE EMBL:AAEX03014902 RefSeq:XP_534771.2
Ensembl:ENSCAFT00000024557 GeneID:477576 KEGG:cfa:477576
Uniprot:E2R770
Length = 862
Score = 1756 (623.2 bits), Expect = 6.1e-181, P = 6.1e-181
Identities = 333/536 (62%), Positives = 400/536 (74%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NG CSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGTCSVHEYSGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E K C+++VLWLDCDKEGENICFEV++AV +N + KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGKGCDYIVLWLDCDKEGENICFEVLDAVLPVMNPTHSGEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AAM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDTDICAAMARLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNADKDRSLLLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 272 MFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPENFDLKGPLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + AT +L +AWRLY+YI RHFI T+ D Y Q F + E FT K ++ PG
Sbjct: 392 PMRSATEAELGSEAWRLYEYITRHFIATVSYDCKYLQSTISFRIGPEHFTCTGKTVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD P+ +KM+E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSVPLEESLPTCQRGDCFPVSEMKMLEKQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>UNIPROTKB|F1RL05 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9823 "Sus scrofa"
[GO:0007059 "chromosome segregation" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0007059 GO:GO:0000793 GO:GO:0006265
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 KO:K03165 CTD:8940 OMA:GNKERDE
EMBL:CU468588 RefSeq:XP_003359220.1 Ensembl:ENSSSCT00000011039
GeneID:100155140 KEGG:ssc:100155140 ArrayExpress:F1RL05
Uniprot:F1RL05
Length = 859
Score = 1755 (622.8 bits), Expect = 7.8e-181, P = 7.8e-181
Identities = 333/536 (62%), Positives = 400/536 (74%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NG CSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGTCSVHEYTGTFAGQPVHFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E K C+++VLWLDCDKEGENICFEV++AV +N S KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGKGCDYIVLWLDCDKEGENICFEVLDAVLPVMNQAHGSEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM +L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+SL
Sbjct: 152 FSSITDTDICNAMAHLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFDKSTCN 266
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDQDRSLLLDWDRVRVFDREIAQ 271
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 272 MFLNMTKPEKEAQVEATSKKEKTKQRPLALNTVEMLRVASSALGMGPQHAMQTAERLYTQ 331
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPE+FDL LRQQ + P W D V+++L+ GI++PRKG D GDHPPIT
Sbjct: 332 GYISYPRTETTHYPESFDLKGPLRQQANHPYWADTVKQLLAEGINRPRKGHDAGDHPPIT 391
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + AT +L G+AWRLY+YI RHFI T+ D Y Q F + E FT K ++ PG
Sbjct: 392 PMRSATEAELGGEAWRLYEYITRHFIATVSHDCRYLQSTISFRIGPERFTCTGKTVISPG 451
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTD 505
FT +M W ++ ES+P + GD + VKM+E++T+PPDYLTE+ELI+LMEKHGIGTD
Sbjct: 452 FTEIMPWQSVPLEESLPTCQKGDTFAVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTD 511
Query: 506 ASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
ASIPVHINNICQRNYV V SGRRL PT+LGIVLVHGY KID ELV PT+RSA Q
Sbjct: 512 ASIPVHINNICQRNYVVVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQ 567
>UNIPROTKB|E1BQG8 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9031 "Gallus
gallus" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0007059
GO:GO:0000793 GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
OMA:QMFLNIT EMBL:AADN02034767 IPI:IPI00820597
Ensembl:ENSGALT00000040019 ArrayExpress:E1BQG8 Uniprot:E1BQG8
Length = 863
Score = 1748 (620.4 bits), Expect = 4.3e-180, P = 4.3e-180
Identities = 332/538 (61%), Positives = 401/538 (74%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NG CSVHE+ G G FKMTSVCGH+M LDF KYN+WDKVDP ELFS PTEK+E
Sbjct: 32 LNGVCSVHEYTGSFIGQSAHFKMTSVCGHVMTLDFIGKYNSWDKVDPAELFSKAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKT---VWRA 146
A PKL + FL E + C+ +VLWLDCDKEGENICFEV++AV +N SP T ++RA
Sbjct: 92 ANPKLTMVKFLQVEGRGCDSIVLWLDCDKEGENICFEVLDAVLPVMN-KSPSTERMIYRA 150
Query: 147 RFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDAS 206
+FS+ITD DI AM +L +PN+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+S
Sbjct: 151 KFSSITDTDICNAMNHLGEPNLNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSS 210
Query: 207 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVA-VSVTWSRGHIFDKSTC 265
LIS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + +++ W R +FD+
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNPEKESSLTLDWDRVRVFDREIA 270
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
+F + K V V K K +P ALNTVE++RVAS+ LGMGP HAMQIAERLYT
Sbjct: 271 QMFLNITKMAKEAKVESVSKKEKVKQRPLALNTVEMLRVASAALGMGPQHAMQIAERLYT 330
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPI 385
QGY+SYPRTETT YPENFDL LRQQ ++P W + V+ +LS GI++PRKG D GDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGCLRQQANNPYWAETVKALLSEGINRPRKGHDAGDHPPI 390
Query: 386 TPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHP 445
TP K AT +L GD+WRLY+YI RHFI T+ D Y Q FS+ E F K + P
Sbjct: 391 TPMKAATEVELGGDSWRLYEYITRHFIATVSADCKYLQTNISFSIGPERFNCVGKVVTSP 450
Query: 446 GFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGT 504
GFT +M W ++ ES+P + GDL P+ +K++E +T+PPDYLTE+ELI+LMEKHGIGT
Sbjct: 451 GFTEIMPWHSIALEESLPSCEKGDLFPVGEIKLLEMQTSPPDYLTEAELITLMEKHGIGT 510
Query: 505 DASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKI-DRELVEPTMRSAYRVQ 561
DASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KI D ELV PT+RSA Q
Sbjct: 511 DASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIVDAELVLPTIRSAVEKQ 568
>ZFIN|ZDB-GENE-070705-37 [details] [associations]
symbol:top3b "topoisomerase (DNA) III beta"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
ZFIN:ZDB-GENE-070705-37 GO:GO:0005694 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 EMBL:BX005237 EMBL:CR933528
IPI:IPI01016652 ProteinModelPortal:F1QNX4
Ensembl:ENSDART00000030553 Bgee:F1QNX4 Uniprot:F1QNX4
Length = 862
Score = 1740 (617.6 bits), Expect = 3.0e-179, P = 3.0e-179
Identities = 329/537 (61%), Positives = 402/537 (74%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVHE++G G V FKMTSVCGH+M LDF KYNNWDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHEYMGSFTGQNVRFKMTSVCGHVMSLDFIGKYNNWDKVDPAELFSKAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQIN--INSPKTVWRAR 147
A PKL + FL EAK C+++VLWLDCDKEGENICFEV++A++ +N + +TV+RA+
Sbjct: 92 ANPKLNMVKFLQVEAKGCDYVVLWLDCDKEGENICFEVLDAIQPVMNKPYGNERTVYRAK 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +PN EA SVDARQELDLRIGCAFTR+QTK+FQGKYG+LD+SL
Sbjct: 152 FSSITDTDICNAMNRLGEPNKNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVT--WSRGHIFDKSTC 265
IS+GPCQTPTLGFCVERHDKI++FKPE YW++ + G +T W R +FD+
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPEAYWVVQAKVANFGKDSPLTLDWDRVRVFDRDIG 271
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
+F + K V V K+K +P ALNTVE++RVASS LGMGP H MQIAERLYT
Sbjct: 272 QMFVNMAKTAKEARVDSVTKKEKAKQRPLALNTVEMLRVASSALGMGPQHTMQIAERLYT 331
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPI 385
QGY+SYPRTETT YPENFDL L+QQ +S WG+ V+ +LS GI++PRKG D GDHPPI
Sbjct: 332 QGYISYPRTETTHYPENFDLKGTLKQQANSTFWGETVKALLSEGINRPRKGADAGDHPPI 391
Query: 386 TPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHP 445
TP + A+ +L D WRLYDYI RHFI T+ D Y Q FS+A E FT K L+
Sbjct: 392 TPMRAASENELGSDGWRLYDYITRHFIATVSPDCKYLQTTISFSIATEGFTCSGKTLISA 451
Query: 446 GFTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGT 504
G+T VM W + + E++P + G++ + +K++E++T PPDYLTE+ELI+LMEKHGIGT
Sbjct: 452 GYTEVMPWQGIAQEEALPVCERGEMFTVDEIKLLEKQTNPPDYLTEAELITLMEKHGIGT 511
Query: 505 DASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
DASIPVHINNICQRNYVTV SGR+L PT+LGIVLVHGY KID +LV PT+RSA Q
Sbjct: 512 DASIPVHINNICQRNYVTVESGRKLKPTNLGIVLVHGYYKIDADLVLPTIRSAVEKQ 568
>FB|FBgn0026015 [details] [associations]
symbol:Top3beta "Topoisomerase 3beta" species:7227
"Drosophila melanogaster" [GO:0003917 "DNA topoisomerase type I
activity" evidence=ISS;NAS] [GO:0003916 "DNA topoisomerase
activity" evidence=IDA;NAS] [GO:0004520 "endodeoxyribonuclease
activity" evidence=IDA] [GO:0000737 "DNA catabolic process,
endonucleolytic" evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:AE014298 GO:GO:0004520
GO:GO:0000737 GO:GO:0006265 PROSITE:PS50880 SMART:SM00493
GO:GO:0003916 GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
GeneTree:ENSGT00530000063430 KO:K03165 Gene3D:1.10.290.10
EMBL:AF099909 EMBL:BT016116 RefSeq:NP_511059.2 UniGene:Dm.2946
ProteinModelPortal:O96651 DIP:DIP-22155N STRING:O96651 PaxDb:O96651
PRIDE:O96651 EnsemblMetazoa:FBtr0070930 GeneID:31565
KEGG:dme:Dmel_CG3458 CTD:31565 FlyBase:FBgn0026015
InParanoid:O96651 OMA:PPFVQGT OrthoDB:EOG4QRFJZ PhylomeDB:O96651
GenomeRNAi:31565 NextBio:774220 Bgee:O96651 GermOnline:CG3458
Uniprot:O96651
Length = 875
Score = 1728 (613.3 bits), Expect = 5.7e-178, P = 5.7e-178
Identities = 334/529 (63%), Positives = 396/529 (74%)
Query: 32 NGACSVHEWVGPLFGD-LVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREA 90
NG CS HEW G + V F+MTSVCGH+M LDF KYN WDKVDP++LF C TEK+E
Sbjct: 34 NG-CSTHEWTGNFRNEGSVHFRMTSVCGHVMSLDFNKKYNCWDKVDPIQLFGCATEKKET 92
Query: 91 TPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQIN-INSPKTVWRARFS 149
PK + FLA+EA+ C++LVLWLDCDKEGENICFEVM+AV+H IN + S + +RA FS
Sbjct: 93 NPKQNMRKFLAHEARGCDYLVLWLDCDKEGENICFEVMDAVKHVINNVYSDQVTYRAHFS 152
Query: 150 AITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
AIT+KDIK AM L PN EA+SVDARQELDLRIGCAFTR+QTKFFQ +YGDLD+SLIS
Sbjct: 153 AITEKDIKKAMETLGHPNENEAKSVDARQELDLRIGCAFTRFQTKFFQDRYGDLDSSLIS 212
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVA-VSVTWSRGHIFDKSTCNVF 268
YGPCQTPTLGFCV+RHD I+TFKPE +W L L L G V++ W+RG +F K +
Sbjct: 213 YGPCQTPTLGFCVKRHDDIQTFKPESFWHLQL---LAGQPEVTLEWARGRVFKKDIAIML 269
Query: 269 FKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGY 328
V++ K TV V S K+KPQALNTVELMR+ SSGLG+GP AMQIAERLYTQGY
Sbjct: 270 LNRVKEHKKATVESVASKEAYKSKPQALNTVELMRICSSGLGIGPFQAMQIAERLYTQGY 329
Query: 329 VSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPT 388
+SYPRTET QYP NFDL AVL + S D+G+ R +L + I PRKGKD GDHPPITP
Sbjct: 330 ISYPRTETNQYPTNFDLPAVLHVLKPSADFGEEARSILGD-IQTPRKGKDAGDHPPITPM 388
Query: 389 KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFT 448
KL R+ D D WR+Y++I RHF+GT+ DL Y AK SV E F+ A L+ GFT
Sbjct: 389 KLGNRSDFDRDTWRVYEFICRHFMGTVSRDLKYRVTTAKLSVGMETFSCTASVLIDAGFT 448
Query: 449 GVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDAS 507
VMTWSA K+E P F G + I V+++E +T PPDYLTESELI+LME+HGIGTDAS
Sbjct: 449 KVMTWSAFGKDEPQPPFVQGTQVAINDVRLIESQTGPPDYLTESELITLMEEHGIGTDAS 508
Query: 508 IPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
IPVHINNICQRNYV + +GR+L+PT+LGIVLVHGYQKID ELV PTMR+
Sbjct: 509 IPVHINNICQRNYVHIENGRKLMPTTLGIVLVHGYQKIDPELVLPTMRT 557
>WB|WBGene00012995 [details] [associations]
symbol:Y48C3A.14 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0032259
"methylation" evidence=IEA] [GO:0003916 "DNA topoisomerase
activity" evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005694 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 EMBL:AL117203 GeneID:174978
KEGG:cel:CELE_Y48C3A.14 CTD:174978 RefSeq:NP_001254381.1
ProteinModelPortal:H1UBJ9 SMR:H1UBJ9 EnsemblMetazoa:Y48C3A.14a
WormBase:Y48C3A.14a OMA:QMFLNIT Uniprot:H1UBJ9
Length = 869
Score = 1554 (552.1 bits), Expect = 1.6e-159, P = 1.6e-159
Identities = 307/538 (57%), Positives = 376/538 (69%)
Query: 32 NGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREAT 91
NG CSV E+ G G FK+TS CGH+M LDF K+NNW++VDP EL+S PT++ EA
Sbjct: 34 NGVCSVSEYDGQFNGRAARFKVTSTCGHVMSLDFPPKFNNWERVDPAELYSAPTQRIEAN 93
Query: 92 PKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSP---KTVWRARF 148
PK+K+ FLA+EAK+ +FLVLWLDCDKEGENICFEV++AV+ + N V+RA F
Sbjct: 94 PKMKMNEFLASEAKNADFLVLWLDCDKEGENICFEVIDAVKCAMFKNRQDFMSDVYRAHF 153
Query: 149 SAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLI 208
SAIT+KDIKAAM NL +P+ + SVDARQELDLRIGC+FTR+QTKFFQGKYGDLD+++I
Sbjct: 154 SAITEKDIKAAMRNLGRPDQNMSHSVDARQELDLRIGCSFTRFQTKFFQGKYGDLDSNVI 213
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLL--DLTLNLNGVAVSVTWSRGHIFDKSTCN 266
SYGPCQTPTLGFCV RHD+I FKPE YW+L + T + +G S W RG IFD
Sbjct: 214 SYGPCQTPTLGFCVTRHDQIVQFKPEQYWVLKTNFTTSDDGQIFSPEWQRGRIFDAEVAR 273
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
VF ++K V+DV K +P ALNTVELMRVASS LGM P M +AE LYTQ
Sbjct: 274 VFVDRIKKCHTGLVLDVSKKEARKERPCALNTVELMRVASSSLGMSPSTTMHVAEALYTQ 333
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT Y NFDL L+ WG V +VL++GI +P+ G D GDHPPIT
Sbjct: 334 GYISYPRTETTAYSANFDLTGTLKILAGDRKWGSVVSQVLADGIKRPKSGVDKGDHPPIT 393
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P + L GD R+Y+Y+ +HF+ TL VY K S DE FT++ K ++ PG
Sbjct: 394 PMR-PNHGGLSGDMSRIYEYVSQHFVATLMKQCVYEVTTVKMSCGDEQFTLQGKNVVEPG 452
Query: 447 FTGVMTWSAMKNE-SIPDF--KPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIG 503
FT VM W +++ E S+P + G I +Q+ ++ R+TTPP YLTE+ELI+LMEKHGIG
Sbjct: 453 FTAVMPWLSVEEECSVPKSLQQIGAKIELQNAEIQARETTPPGYLTEAELITLMEKHGIG 512
Query: 504 TDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRVQ 561
TDASIPVHIN I QRNYVTV SGRRLVPT LG LV GY K+D ELV PTMR+ Q
Sbjct: 513 TDASIPVHINTITQRNYVTVESGRRLVPTRLGQCLVRGYWKVDPELVLPTMRAELEEQ 570
>TAIR|locus:2045517 [details] [associations]
symbol:AT2G32000 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA;ISS] [GO:0005576
"extracellular region" evidence=ISM] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS] [GO:0006268 "DNA unwinding involved in
replication" evidence=ISS] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005694 EMBL:CP002685 GO:GO:0006265
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 KO:K03165
OMA:QMFLNIT IPI:IPI00534869 RefSeq:NP_180760.2 UniGene:At.38130
PRIDE:F4ISQ7 EnsemblPlants:AT2G32000.1 GeneID:817760
KEGG:ath:AT2G32000 Uniprot:F4ISQ7
Length = 865
Score = 1465 (520.8 bits), Expect = 4.2e-150, P = 4.2e-150
Identities = 277/554 (50%), Positives = 371/554 (66%)
Query: 3 LRVKKLVPASEIKLARPSLISLLTPLQRMNGACSVHEWVGPLFGDLVLFKMTSVCGHIMG 62
LRV + I L+ S++S + G+ VHE+ G G +++TSV GH+
Sbjct: 5 LRVLMVAEKPSIALSIASVLSH-GQMSTRRGSTEVHEFDGMFRGFKAHYRVTSVIGHVFS 63
Query: 63 LDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGEN 122
+DF KY NW +DP +LF P K+E+ PK + L+NEA+ C ++VLWLDCD+EGEN
Sbjct: 64 VDFPEKYQNWATIDPQDLFDAPIIKKESNPKAHICRHLSNEARGCSYMVLWLDCDREGEN 123
Query: 123 ICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDL 182
ICFEV+E+ + +S + V+RARFS++T+KDI AM NLV+PN EA +VDARQE+DL
Sbjct: 124 ICFEVIESTGFDMK-DSKRKVYRARFSSVTEKDISKAMDNLVEPNRDEALAVDARQEIDL 182
Query: 183 RIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLT 242
++G AF+R+QT +FQGKY +LD +ISYGPCQTPTLGFCV+R+ I TFKPE +W L
Sbjct: 183 KVGVAFSRFQTSYFQGKYQNLDCRVISYGPCQTPTLGFCVQRYMHINTFKPEKFWALRPY 242
Query: 243 LNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELM 302
+ +G + + W R +FD VF K V + + V+DV + K +P LNTV L+
Sbjct: 243 IRKDGYELQLEWERRRLFDLEAATVFQKLVVEGRTAKVMDVSEKQEVKGRPAGLNTVNLL 302
Query: 303 RVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHV 362
+VASS LG GP AM +AERLYTQG++SYPRTE+T YP +FD LR Q S+P WG +V
Sbjct: 303 KVASSALGFGPQTAMHLAERLYTQGFISYPRTESTAYPSSFDFTDTLRAQVSNPVWGGYV 362
Query: 363 REVLSNGISKPRKGKDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYT 422
+ +LS+G P+ G D GDHPPITP + AT + GDAWRLY Y+ +HF+GT+ + Y
Sbjct: 363 QRLLSDGFHMPKSGTDAGDHPPITPMRAATEVMVGGDAWRLYQYVCQHFLGTVSPNCKYI 422
Query: 423 QKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKT 482
+ + S+ E F + + GFT +M WSA+ + +P F G+ I + V++ E T
Sbjct: 423 RTKVELSIGGETFHCTGQRVTEKGFTAIMPWSAVDEKKLPSFLKGERIEVLRVELYEGNT 482
Query: 483 TPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGY 542
PPDYLTESELISLMEKHGIGTDASI VHINNI +RNYV V SGR++VPT+LGI L+ GY
Sbjct: 483 APPDYLTESELISLMEKHGIGTDASIAVHINNIGERNYVQVQSGRKMVPTALGITLIRGY 542
Query: 543 QKIDRELVEPTMRS 556
Q ID +L P +RS
Sbjct: 543 QCIDPDLCLPDIRS 556
>UNIPROTKB|H0Y6W0 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00437 GO:GO:0005694 GO:GO:0006265
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012
HGNC:HGNC:11993 ProteinModelPortal:H0Y6W0 Ensembl:ENST00000457270
Uniprot:H0Y6W0
Length = 525
Score = 1180 (420.4 bits), Expect = 6.7e-120, P = 6.7e-120
Identities = 222/361 (61%), Positives = 265/361 (73%)
Query: 203 LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-GVAVSVTWSRGHIFD 261
LD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N + ++ + W R +FD
Sbjct: 2 LDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFD 61
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAE 321
+ +F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AE
Sbjct: 62 REIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAE 121
Query: 322 RLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD 381
RLYTQGY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D GD
Sbjct: 122 RLYTQGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGD 181
Query: 382 HPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKY 441
HPPITP K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E+FT K
Sbjct: 182 HPPITPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPELFTCSGKT 241
Query: 442 LLHPGFTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKH 500
+L PGFT VM W ++ ES+P + GD P+ VKM+E++T PPDYLTE+ELI+LMEKH
Sbjct: 242 VLSPGFTEVMPWQSVPLEESLPTCQRGDAFPVGEVKMLEKQTNPPDYLTEAELITLMEKH 301
Query: 501 GIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSAYRV 560
GIGTDASIPVHINNICQRNYVTV SGRRL PT+LGIVLVHGY KID ELV PT+RSA
Sbjct: 302 GIGTDASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEK 361
Query: 561 Q 561
Q
Sbjct: 362 Q 362
>UNIPROTKB|E2RIS5 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9615 "Canis lupus
familiaris" [GO:0016605 "PML body" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
GO:GO:0016605 GO:GO:0008270 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 KO:K03165 CTD:7156 OMA:KPRKCSL
EMBL:AAEX03003715 RefSeq:XP_546656.2 Ensembl:ENSCAFT00000029019
GeneID:489537 KEGG:cfa:489537 NextBio:20862709 Uniprot:E2RIS5
Length = 989
Score = 987 (352.5 bits), Expect = 1.9e-99, P = 1.9e-99
Identities = 217/559 (38%), Positives = 319/559 (57%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKILCVAEKNDAAKGIADLLSNGRMRRREGFSKFNKIYEFDYHLYGQNVTMVMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVGIKKTLQRETQQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ R + V RARFS IT + ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCRA---VKPNLQVLRARFSEITPRAVRVACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGDLDAS-LISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + ++ A LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQKIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHK 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V+S +KSK +PQAL+T
Sbjct: 270 IKVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCMEDPTATVVEVRSKSKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P++ DL ++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLDLTVLVEQQTPDPRW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK + L GD RLY++IVRHF+
Sbjct: 390 GAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYTS--SLQGDEQRLYEFIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++++P ++ G +V+M
Sbjct: 448 DAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDRWSDKTLPVYERGSHFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T+ +R +P LG+
Sbjct: 508 VDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTADKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>UNIPROTKB|F1MGY1 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9913 "Bos taurus"
[GO:0016605 "PML body" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] InterPro:IPR000380
InterPro:IPR001878 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR010666 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 Pfam:PF06839 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00343 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694 GO:GO:0016605
GO:GO:0008270 GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
OMA:KPRKCSL EMBL:DAAA02048987 EMBL:DAAA02048988 IPI:IPI00827029
UniGene:Bt.103042 Ensembl:ENSBTAT00000022721 Uniprot:F1MGY1
Length = 1002
Score = 986 (352.1 bits), Expect = 2.4e-99, P = 2.4e-99
Identities = 219/559 (39%), Positives = 316/559 (56%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGAC---SVHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L G V MTSV GH
Sbjct: 33 VRKILCVAEKNDAAKGIADLLSGGRMRRREGLSRFNKIYEFDYHLCGQNVTMVMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L EA+ C+ LV+W DCD+E
Sbjct: 93 LLAHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLEREAQQCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FEV+ + + V RARFS IT + ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEVIHVCKA---VKPSLQVLRARFSEITTRAVRTACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGDLDAS-LISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + ++ A LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQKIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHK 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V +W R +F+ + C V ++ ++ VV+V+S KSK +PQAL+T
Sbjct: 270 IRVTHDHRDGVVEFSWKRHRLFNHTACLVLYQMCMEDPRAMVVEVRSKAKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P++ DL A++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLDLAALVEQQTPDPRW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G R +L G PR G K HPPI PTK L GD RLY+ IVRHF+
Sbjct: 390 GAFARNILERGGPTPRNGNKSDQAHPPIHPTKYTD--SLQGDEQRLYELIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++++P ++ G +V+M
Sbjct: 448 DAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDRWSDKTLPVYEQGTCFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T +R +P LG+
Sbjct: 508 VDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>MGI|MGI:1197527 [details] [associations]
symbol:Top3a "topoisomerase (DNA) III alpha" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016605 "PML body" evidence=ISO] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000380 InterPro:IPR001878
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR010666
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013826 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343
SMART:SM00436 SMART:SM00437 Pfam:PF01751 MGI:MGI:1197527
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0005654
GO:GO:0046872 GO:GO:0016605 GO:GO:0008270 Reactome:REACT_120463
Reactome:REACT_27235 GO:GO:0006265 PROSITE:PS50880 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165
Gene3D:1.10.290.10 CTD:7156 HOGENOM:HOG000184377 HOVERGEN:HBG056668
OMA:KPRKCSL EMBL:AB006074 IPI:IPI00115672 PIR:T13951
RefSeq:NP_033436.1 UniGene:Mm.477819 ProteinModelPortal:O70157
SMR:O70157 IntAct:O70157 STRING:O70157 PhosphoSite:O70157
PRIDE:O70157 Ensembl:ENSMUST00000002891 GeneID:21975 KEGG:mmu:21975
InParanoid:O70157 NextBio:301678 Bgee:O70157 CleanEx:MM_TOP3A
Genevestigator:O70157 GermOnline:ENSMUSG00000002814 Uniprot:O70157
Length = 1003
Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
Identities = 218/559 (38%), Positives = 317/559 (56%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSNGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETHHCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT ++ A NL +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCKA---VKPNLRVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGDLDAS-LISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + ++ A LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHK 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IKVTHDHKDGTVEFNWKRYRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQGY+SYPRTET +P++ +LVA++ QQ P W
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLNLVALVEQQTVDPHW 389
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + +L G PR G K HPPI PTK + Q GD RLY++IVRHF+
Sbjct: 390 GAFAQTILERGGPTPRNGSKSDQAHPPIHPTKYTSGLQ--GDDRRLYEFIVRHFLACCSQ 447
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D + + +A E F +L + V + ++ +P ++ G +V+M
Sbjct: 448 DAQGQETTVEIDIAQERFVAHGLIILARNYLDVYPYDHWSDKLLPVYEQGSHFQPSTVEM 507
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
V+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +TS +R +P LG+
Sbjct: 508 VDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHLGMG 567
Query: 538 LVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 568 LVEGYDSMGYEMSKPDLRA 586
>UNIPROTKB|Q13472 [details] [associations]
symbol:TOP3A "DNA topoisomerase 3-alpha" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0016605 "PML body"
evidence=IDA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IDA] [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003677 "DNA binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=TAS] [GO:0007126 "meiosis" evidence=TAS]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0007126 GO:GO:0005694 GO:GO:0046872 GO:GO:0016605
GO:GO:0008270 Reactome:REACT_111183 EMBL:CH471196 GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165 EMBL:U43431 EMBL:HQ205026
EMBL:HQ205027 EMBL:HQ205028 EMBL:HQ205029 EMBL:HQ205030
EMBL:HQ205031 EMBL:HQ205032 EMBL:HQ205033 EMBL:HQ205034
EMBL:HQ205035 EMBL:HQ205036 EMBL:HQ205037 EMBL:HQ205038
EMBL:HQ205039 EMBL:HQ205040 EMBL:HQ205041 EMBL:HQ205042
EMBL:HQ205043 EMBL:HQ205044 EMBL:HQ205045 EMBL:HQ205046
EMBL:HQ205047 EMBL:HQ205048 EMBL:HQ205049 EMBL:HQ205050
EMBL:HQ205051 EMBL:HQ205052 EMBL:HQ205053 EMBL:HQ205054
EMBL:HQ205055 EMBL:HQ205056 EMBL:HQ205057 EMBL:HQ205058
EMBL:HQ205059 EMBL:HQ205060 EMBL:HQ205061 EMBL:HQ205062
EMBL:HQ205063 EMBL:HQ205064 EMBL:HQ205065 EMBL:AK292926
EMBL:BC051748 IPI:IPI00013378 IPI:IPI00221295 RefSeq:NP_004609.1
UniGene:Hs.592115 ProteinModelPortal:Q13472 SMR:Q13472
DIP:DIP-33323N IntAct:Q13472 MINT:MINT-6610291 STRING:Q13472
PhosphoSite:Q13472 DMDM:2501242 PaxDb:Q13472 PRIDE:Q13472
Ensembl:ENST00000321105 Ensembl:ENST00000580095 GeneID:7156
KEGG:hsa:7156 UCSC:uc002gsx.1 CTD:7156 GeneCards:GC17M018175
HGNC:HGNC:11992 HPA:CAB002449 MIM:601243 neXtProt:NX_Q13472
PharmGKB:PA36673 HOGENOM:HOG000184377 HOVERGEN:HBG056668
InParanoid:Q13472 OMA:KPRKCSL OrthoDB:EOG4K6G3F PhylomeDB:Q13472
GenomeRNAi:7156 NextBio:28002 ArrayExpress:Q13472 Bgee:Q13472
CleanEx:HS_TOP3A Genevestigator:Q13472 GermOnline:ENSG00000177302
Uniprot:Q13472
Length = 1001
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 218/564 (38%), Positives = 316/564 (56%)
Query: 1 MHLR-VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMT 54
M LR V+K++ +E A + LL+ ++R G ++E+ L+G V MT
Sbjct: 28 MALRGVRKVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMT 87
Query: 55 SVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWL 114
SV GH++ DF ++ W +PL LF EK + + L E + C+ LV+W
Sbjct: 88 SVSGHLLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWT 147
Query: 115 DCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSV 174
DCD+EGENI FE++ + + V RARFS IT ++ A NL +P+ + +V
Sbjct: 148 DCDREGENIGFEIIHVCKA---VKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAV 204
Query: 175 DARQELDLRIGCAFTRYQTKFFQGKYGDLDAS-LISYGPCQTPTLGFCVERHDKIRTFKP 233
D RQELDLRIG AFTR+QT Q + ++ A LISYG CQ PTLGF VER I+ F P
Sbjct: 205 DVRQELDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVP 264
Query: 234 EPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKP 293
E + + +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +P
Sbjct: 265 EIFHRIKVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCVEDPMATVVEVRSKPKSKWRP 324
Query: 294 QALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQE 353
QAL+TVEL ++AS L + M+IAE+LYTQGY+SYPRTET +P + +L ++ QQ
Sbjct: 325 QALDTVELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQT 384
Query: 354 SSPDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFI 412
P WG + +L G PR G K HPPI PTK Q GD RLY++IVRHF+
Sbjct: 385 PDPRWGAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYTNNLQ--GDEQRLYEFIVRHFL 442
Query: 413 GTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPI 472
D + + +A E F +L + V + ++ +P ++ G
Sbjct: 443 ACCSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQP 502
Query: 473 QSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPT 532
+V+MV+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T +R +P
Sbjct: 503 STVEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPG 562
Query: 533 SLGIVLVHGYQKIDRELVEPTMRS 556
LG+ LV GY + E+ +P +R+
Sbjct: 563 HLGMGLVEGYDSMGYEMSKPDLRA 586
>UNIPROTKB|F1P1F3 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9031 "Gallus
gallus" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013826
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
GO:GO:0016605 GO:GO:0008270 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
Gene3D:1.10.290.10 OMA:KPRKCSL EMBL:AADN02023704 IPI:IPI00571604
Ensembl:ENSGALT00000008050 Uniprot:F1P1F3
Length = 1020
Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
Identities = 212/560 (37%), Positives = 316/560 (56%)
Query: 4 RVKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCG 58
R++K++ +E A + LL+ ++R G ++E+ +FG V MTSV G
Sbjct: 34 RIRKVLCVAEKNDAARGIADLLSNSRMRRREGFSKFNKIYEYDYQMFGQNVTMVMTSVSG 93
Query: 59 HIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDK 118
H++ DF + W +PL LF EK + + L E + C+ LV+W DCD+
Sbjct: 94 HLLAHDFKLPFRKWHSCNPLALFDAEIEKYCPENYVDIKRTLEREVQQCQALVIWTDCDR 153
Query: 119 EGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQ 178
EGENI FE++ + + V+RARFS IT ++ A NL +P+ + +V+ RQ
Sbjct: 154 EGENIGFEIIHVCKA---VKPNLQVFRARFSEITLHAVRRACENLTQPDQKTSDAVEVRQ 210
Query: 179 ELDLRIGCAFTRYQTKFFQGKYGDLDAS-LISYGPCQTPTLGFCVERHDKIRTFKPEPYW 237
ELDLRIG AFTR+QT Q + D+ A LISYG CQ PTLGF VER I+ F PE ++
Sbjct: 211 ELDLRIGAAFTRFQTLRLQKIFPDILADQLISYGSCQFPTLGFVVERFKAIQAFVPEAFY 270
Query: 238 LLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALN 297
+ +T + V W R +F+ + C V + ++ TVV+V S KSK +P L+
Sbjct: 271 KIKVTHDHEDGNVVFNWKRNRLFNHTACLVLYHMCMEDPVATVVEVGSKPKSKWRPLPLD 330
Query: 298 TVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPD 357
TVEL ++AS L + M+IAE+LYTQG++SYPRTET +P+ +L A+++ Q P+
Sbjct: 331 TVELEKLASRKLKINAKETMRIAEKLYTQGFISYPRTETNIFPKELNLSALVQHQTQDPN 390
Query: 358 WGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLC 416
WG + +L G PR G K HPPI PTK Q G+ RLY++IVRHF+
Sbjct: 391 WGAFAQRILDQGGPTPRNGTKSDQAHPPIHPTKYTANLQ--GNEQRLYEFIVRHFLACCS 448
Query: 417 GDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVK 476
D + + +A+E F + +L + V + ++ IP ++ G +V+
Sbjct: 449 QDAKGQETTVEIDIANERFVAQGLMILARNYLEVYPYEKWSDKVIPLYQKGSRFQPTTVE 508
Query: 477 MVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGI 536
MV+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +T+ +R +P LG+
Sbjct: 509 MVDGETSPPLLLTEADLIALMEKHGIGTDATHAEHIETIKTRMYVGLTADQRFLPGHLGM 568
Query: 537 VLVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 569 GLVEGYDSMGYEMSKPDLRA 588
>ZFIN|ZDB-GENE-071212-2 [details] [associations]
symbol:top3a "topoisomerase (DNA) III alpha"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA] [GO:0003917
"DNA topoisomerase type I activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016853 "isomerase
activity" evidence=IEA] InterPro:IPR000380 InterPro:IPR001878
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR010666
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013826 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
ZFIN:ZDB-GENE-071212-2 GO:GO:0005694 GO:GO:0008270 GO:GO:0006265
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
Gene3D:1.10.290.10 EMBL:BX649547 EMBL:BX649440 IPI:IPI00489703
ProteinModelPortal:F1R242 Ensembl:ENSDART00000102492 Bgee:F1R242
Uniprot:F1R242
Length = 1009
Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
Identities = 213/562 (37%), Positives = 316/562 (56%)
Query: 4 RVKKLVPASEIKLARPSLISLLTP-LQRMNGACSVH----EWVGPLFGDLVLFKMTSVCG 58
++KK++ +E A + +++ R CSV+ E+ LFG V MTSV G
Sbjct: 32 QIKKVLCVAEKNDAAKGIAEIMSNGRSRRREGCSVYNKIYEYEYNLFGQNVTVNMTSVSG 91
Query: 59 HIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDK 118
H++ L+F K + P+ LF EK + + L E + C+ L++W DCD+
Sbjct: 92 HLLALEF--KVHR-HSCSPVLLFDAEVEKYCPENFIPIKRTLEREVRQCQALIVWTDCDR 148
Query: 119 EGENICFEVMEAVRH-QININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDAR 177
EGENI FE+++ + + NI V+RARFS IT I+ A L +P+I + +VD R
Sbjct: 149 EGENIGFEIIDVCKAVKPNIQ----VFRARFSEITPNSIRRACETLTEPDINVSDAVDVR 204
Query: 178 QELDLRIGCAFTRYQTKFFQGKYGD-LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPY 236
QELDLRIG +FTR+QT Q + + L LISYG CQ PTLGF VER I+ F PE +
Sbjct: 205 QELDLRIGASFTRFQTLRLQKIFPESLSDQLISYGSCQFPTLGFVVERFKAIQAFIPETF 264
Query: 237 WLLDLTLNLNGV-AVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQA 295
+ + + N +V W R +F+ + C V ++ +E V+ V S KSK +P
Sbjct: 265 FKIKVVHEPNEEESVEFNWKRHRLFNHTACLVLYQMCMEEPMAKVISVTSKPKSKWRPLP 324
Query: 296 LNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESS 355
L+TVEL ++AS L + M+IAE+LYTQG++SYPRTET +P+N +L ++ QQ
Sbjct: 325 LDTVELEKLASRKLRISAKETMKIAEKLYTQGFISYPRTETNMFPQNLNLTRLVEQQTQD 384
Query: 356 PDWGDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGT 414
+WG+ + +L +G PR G K HPPI PTK Q G+ RLY++IVRHF+
Sbjct: 385 QEWGNFAQRILESGGPTPRNGNKSDQAHPPIHPTKYTNGLQ--GNEKRLYEFIVRHFLAC 442
Query: 415 LCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQS 474
D + + +A+E F+ ++ + V + N+ IP + P +
Sbjct: 443 CSKDAQGQEVTVEIDIAEERFSASGLTIIARNYLEVYPYDKWYNKVIPSYSPNTTFQPTA 502
Query: 475 VKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSL 534
++MVE +T+PP LTE++LISLMEKHGIGTDA+ HI I R YV +T+ +R +P L
Sbjct: 503 IEMVEGQTSPPQLLTEADLISLMEKHGIGTDATHAEHIETIKSRMYVGLTADQRFLPGEL 562
Query: 535 GIVLVHGYQKIDRELVEPTMRS 556
G+ LV GY + E+ +P +R+
Sbjct: 563 GMGLVEGYNSMGYEMSKPDLRA 584
>WB|WBGene00006596 [details] [associations]
symbol:top-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007126 "meiosis" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0007126 GO:GO:0005694 GO:GO:0008270
GO:GO:0007276 EMBL:AL132860 GO:GO:0006265 PROSITE:PS50880
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
GeneTree:ENSGT00530000063430 KO:K03165 Gene3D:1.10.290.10
HOGENOM:HOG000184377 EMBL:AF057032 PIR:T43031 RefSeq:NP_499558.1
UniGene:Cel.19512 ProteinModelPortal:O61660 SMR:O61660
STRING:O61660 PaxDb:O61660 EnsemblMetazoa:Y56A3A.27.1
EnsemblMetazoa:Y56A3A.27.2 GeneID:176631 KEGG:cel:CELE_Y56A3A.27
UCSC:Y56A3A.27.1 CTD:176631 WormBase:Y56A3A.27 InParanoid:O61660
OMA:IGLMDAN NextBio:893376 Uniprot:O61660
Length = 759
Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
Identities = 198/520 (38%), Positives = 288/520 (55%)
Query: 44 LFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKL-PAFLAN 102
LFG +TSV GH+M F +NW +ELF P + TP++KL L
Sbjct: 45 LFGQQTAISVTSVSGHMMNFQFHENMSNWQTASMVELFRAPV-RHVVTPEMKLIEQTLRE 103
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWN 162
+A+ + LV+W DCD+EGE I E+++ R N ++RARFS IT I A N
Sbjct: 104 QAQRHDILVVWTDCDREGEAIGAEIVKVCRDS---NRRLDIFRARFSEITKAAITRAARN 160
Query: 163 LVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL----DAS-LISYGPCQTPT 217
L++ + +VD R ELDLRIG AFTR QT + ++ DL D S +ISYG CQ PT
Sbjct: 161 LIRLDEKTVAAVDCRSELDLRIGSAFTRLQTLHLRNRFRDLLGQNDTSQVISYGSCQFPT 220
Query: 218 LGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKH 277
LGF +R+ I F EP+W L + V W R +FD+ T ++ ++ K
Sbjct: 221 LGFVTDRYKMIENFVSEPFWKLIVEHTRESHKVEFLWDRNRLFDRDTVDILHDECKETKE 280
Query: 278 VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETT 337
V V KSK +PQAL+TVEL ++ S L M MQ+AE+LY++G++SYPRTET
Sbjct: 281 AHVEKVAKKPKSKWRPQALDTVELEKLGISKLRMSAKQTMQVAEKLYSKGFISYPRTETN 340
Query: 338 QYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQL 396
++P +L +++QQ S WGD EVL NG++ PR G+ + HPPI P K + QL
Sbjct: 341 KFPAGLNLTPLVQQQTQSNIWGDFANEVLQNGVN-PRNGRKSDEAHPPIHPLKFTEKHQL 399
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAM 456
GD W++Y+ +VRHF+ + D + + +V E F + G+ V +
Sbjct: 400 QGDDWKVYELVVRHFLACVSQDAQGEETMVNLTVGTEKFHASGLRIRDMGYLKVYVYEKW 459
Query: 457 KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNIC 516
N +P + G+ +K+ + KT PD+LTE++LISLM+K+GIGTDA+ HI I
Sbjct: 460 GNRLLPTYTEGERFTDFELKIGDGKTQAPDFLTEADLISLMDKYGIGTDATHAEHIEKIK 519
Query: 517 QRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
R Y+ V +L+P+ LG+ LV GY + + +P +R+
Sbjct: 520 TREYIGVRPDGKLIPSFLGLALVDGYDDMGFAMSKPDLRA 559
>UNIPROTKB|B4DK80 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] InterPro:IPR000380 InterPro:IPR001878
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR010666
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005694 GO:GO:0008270 GO:GO:0006265 EMBL:AC127537
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
UniGene:Hs.592115 HGNC:HGNC:11992 HOVERGEN:HBG056668 EMBL:AK296437
IPI:IPI01011812 SMR:B4DK80 STRING:B4DK80 Ensembl:ENST00000542570
UCSC:uc010vxs.1 Uniprot:B4DK80
Length = 906
Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
Identities = 194/483 (40%), Positives = 276/483 (57%)
Query: 76 DPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQI 135
+PL LF EK + + L E + C+ LV+W DCD+EGENI FE++ +
Sbjct: 14 NPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGENIGFEIIHVCKA-- 71
Query: 136 NINSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKF 195
+ V RARFS IT ++ A NL +P+ + +VD RQELDLRIG AFTR+QT
Sbjct: 72 -VKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLR 130
Query: 196 FQGKYGDLDAS-LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTW 254
Q + ++ A LISYG CQ PTLGF VER I+ F PE + + +T + V W
Sbjct: 131 LQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNW 190
Query: 255 SRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPH 314
R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+TVEL ++AS L +
Sbjct: 191 KRHRLFNHTACLVLYQLCVEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAK 250
Query: 315 HAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPR 374
M+IAE+LYTQGY+SYPRTET +P + +L ++ QQ P WG + +L G PR
Sbjct: 251 ETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPR 310
Query: 375 KG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADE 433
G K HPPI PTK Q GD RLY++IVRHF+ D + + +A E
Sbjct: 311 NGNKSDQAHPPIHPTKYTNNLQ--GDEQRLYEFIVRHFLACCSQDAQGQETTVEIDIAQE 368
Query: 434 MFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESEL 493
F +L + V + ++ +P ++ G +V+MV+ +T+PP LTE++L
Sbjct: 369 RFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQPSTVEMVDGETSPPKLLTEADL 428
Query: 494 ISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPT 553
I+LMEKHGIGTDA+ HI I R YV +T +R +P LG+ LV GY + E+ +P
Sbjct: 429 IALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMGLVEGYDSMGYEMSKPD 488
Query: 554 MRS 556
+R+
Sbjct: 489 LRA 491
>FB|FBgn0040268 [details] [associations]
symbol:Top3alpha "Topoisomerase 3alpha" species:7227
"Drosophila melanogaster" [GO:0003917 "DNA topoisomerase type I
activity" evidence=ISS;NAS] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IDA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0000002 "mitochondrial genome maintenance" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0042246 "tissue regeneration" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] InterPro:IPR000380
InterPro:IPR001878 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR010666 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 Pfam:PF06839 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00343 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 EMBL:AE014134 GO:GO:0008270
GO:GO:0000002 GO:GO:0042246 GO:GO:0000724 GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003916 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 EMBL:AF255733 EMBL:BT015282 RefSeq:NP_523602.2
UniGene:Dm.2659 ProteinModelPortal:Q9NG98 SMR:Q9NG98 STRING:Q9NG98
PaxDb:Q9NG98 PRIDE:Q9NG98 EnsemblMetazoa:FBtr0081246 GeneID:35236
KEGG:dme:Dmel_CG10123 CTD:35236 FlyBase:FBgn0040268 eggNOG:COG0550
GeneTree:ENSGT00530000063430 InParanoid:Q9NG98 KO:K03165
OMA:LVIHERN OrthoDB:EOG43TX9H PhylomeDB:Q9NG98 GenomeRNAi:35236
NextBio:792526 Bgee:Q9NG98 GermOnline:CG10123 Gene3D:1.10.290.10
Uniprot:Q9NG98
Length = 1250
Score = 891 (318.7 bits), Expect = 3.6e-89, P = 3.6e-89
Identities = 203/563 (36%), Positives = 297/563 (52%)
Query: 7 KLVPASEIKLARPSLISLLT--PLQRMNGAC---SVHEWVGPLFGDLVLFKMTSVCGHIM 61
K + +E A ++ LL+ QR G V ++ P+ G MTSV GH+M
Sbjct: 27 KYLNVAEKNDAAKTIAGLLSNGAAQRREGYSVYNKVFDFEAPVRGQNAKMVMTSVSGHMM 86
Query: 62 GLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGE 121
L F Y NW VDP LF P +K + + L E + C+ L++W DCD+EGE
Sbjct: 87 QLAFQVSYKNWRTVDPRSLFDAPVKKGVGSDYEPIKRTLEREVRGCQGLIIWTDCDREGE 146
Query: 122 NICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELD 181
NI +E+++ R I N +V+RA FS IT ++ A+ L +P+ ++ +VD R ELD
Sbjct: 147 NIGYEIIDVCR-AIKPNI--SVYRATFSEITTVAVRRALQQLGQPDKRQSDAVDVRTELD 203
Query: 182 LRIGCAFTRYQTKFFQGKYGDLDAS-LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 240
LR G A TR+QT Q + + A LISYG CQ PTLGF ER+ +I F EP+W +
Sbjct: 204 LRTGAAITRFQTMRLQRLFPEKIADKLISYGSCQIPTLGFVAERYKEIEAFVSEPFWKIK 263
Query: 241 LTLNLNGVAVSVTWSRGHIFDKSTCNVFFKA--VEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ ++ + V W+R +FDK C + E + V V K K +P L+T
Sbjct: 264 VLHTIDDLTVEFNWARNRLFDKEACENYLLLCLAEPDPRALVESVTVKPKHKWRPTPLDT 323
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VE+ ++ S L + M IAE+LYT+G++SYPRTET Q+ + F L ++ Q DW
Sbjct: 324 VEMEKLGSRKLKLSAKETMTIAEKLYTKGFISYPRTETNQFSKEFALAPLVEMQTGHRDW 383
Query: 359 GDHVREVLSNGISKPRKG-KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCG 417
G + V+ G PR G K HPPI PTKLA Q G+ R+Y+ +VRHF+ +
Sbjct: 384 GAFAQRVIEWG-PNPRNGNKSDQAHPPIHPTKLAENLQ--GNEARVYELVVRHFLACVSK 440
Query: 418 DLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKM 477
D V ++ + +A E FT + + V + + I ++ G V +
Sbjct: 441 DAVGSETLVHIDIAGEKFTANGLVIHERNYLDVYVYDKWSAKQIHHYENGQRFEPTEVSL 500
Query: 478 VERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
E TT P LTE++LI+LMEKHGIGTDA+ HIN I +R Y+ V LVP +G+
Sbjct: 501 HEGATTAPPLLTEADLIALMEKHGIGTDATHAEHINTIKERGYIGVLDKGFLVPGVIGMG 560
Query: 538 LVHGYQKIDRELVEPTMRSAYRV 560
L GY ++ L +P +R+ + +
Sbjct: 561 LYEGYDAMELALAKPQLRAEFEL 583
>TAIR|locus:2160841 [details] [associations]
symbol:TOP3A "topoisomerase 3alpha" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA;ISS]
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS] [GO:0006268 "DNA unwinding involved in
replication" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IMP] [GO:0006281 "DNA repair" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0007067
"mitosis" evidence=IMP] [GO:0007126 "meiosis" evidence=IMP]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
[GO:0006270 "DNA replication initiation" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0048451 "petal formation" evidence=RCA] [GO:0048453 "sepal
formation" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] [GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013826
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
PRINTS:PR00417 PROSITE:PS00396 PROSITE:PS50158 SMART:SM00343
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005694 GO:GO:0007067
GO:GO:0008270 GO:GO:0006281 GO:GO:0000712 EMBL:AB019227
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
KO:K03165 Gene3D:1.10.290.10 HOGENOM:HOG000184377 OMA:KPRKCSL
HSSP:P14294 EMBL:EU295446 IPI:IPI00517152 RefSeq:NP_201197.1
UniGene:At.28974 ProteinModelPortal:Q9LVP1 SMR:Q9LVP1 PaxDb:Q9LVP1
PRIDE:Q9LVP1 EnsemblPlants:AT5G63920.1 GeneID:836513
KEGG:ath:AT5G63920 TAIR:At5g63920 InParanoid:Q9LVP1
PhylomeDB:Q9LVP1 ProtClustDB:CLSN2686218 Genevestigator:Q9LVP1
Uniprot:Q9LVP1
Length = 926
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 191/519 (36%), Positives = 289/519 (55%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+M L+F +Y W DP +L+ P K K + L EA+ ++LVL
Sbjct: 61 MTSVIGHLMELEFADRYRKWHSCDPADLYQAPVMKHVPEDKKDIKKTLEEEARKSDWLVL 120
Query: 113 WLDCDKEGENICFEVME---AVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIF 169
WLDCD+EGENI FEV++ AV+H + I RA FSA+ D+DI A+ NL PN
Sbjct: 121 WLDCDREGENIAFEVVDVCRAVKHNLFIR------RAHFSALIDRDIHEAVQNLRDPNQL 174
Query: 170 EARSVDARQELDLRIGCAFTRYQTKFFQGKY-----GDLDASLISYGPCQTPTLGFCVER 224
A +VDARQE+DLRIG +FTR+QT + ++ G+ + +ISYGPCQ PTLGF VER
Sbjct: 175 FAEAVDARQEIDLRIGASFTRFQTMLLRDRFAIDSTGEERSRVISYGPCQFPTLGFIVER 234
Query: 225 HDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDV- 283
+ +I+ +PE +W ++ + + W RGH+FD ++ + ++ +E TV++V
Sbjct: 235 YWEIQAHEPEEFWTINCSHQSEEGLATFNWMRGHLFDYASAVILYEMCVEEPTATVMNVP 294
Query: 284 QSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENF 343
+ K P LNT+EL + AS + H M++AE LY G++SYPRTET +
Sbjct: 295 HPRERFKYPPYPLNTIELEKRASRYFRLSSEHTMKVAEELYQAGFISYPRTETDSFSSRT 354
Query: 344 DLVAVLRQQESSPDWGDHVREVLS--NGISK-PRKG-KDVGDHPPITPTKLAT-RTQLDG 398
DL A++ +Q P WG + + +L G+ + P G D HPPI PTK ++ +
Sbjct: 355 DLRAMVEEQTRHPAWGSYAQRLLEPEGGLWRNPANGGHDDKAHPPIHPTKFSSGESNWSR 414
Query: 399 DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKN 458
D +Y+ +VRH++ + V + + +A E F+ + +L + V + +
Sbjct: 415 DHLNVYELVVRHYLACVSQPAVAAETTVEIDIAGERFSASGRAILAKNYLEVYRFESWGG 474
Query: 459 ESIPDFKPGD-LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQ 517
IP ++ G IP ++ + T PP L E++L+S M+K GIGTDA++ HI +
Sbjct: 475 SVIPVYEKGQQFIPT-TLTLDAAVTRPPPLLCEADLLSCMDKAGIGTDATMHDHIKKLLD 533
Query: 518 RNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
R Y T + R PT+LG LV GY + EL +P +R+
Sbjct: 534 RGYATKDANTRFSPTNLGEALVMGYDDMGYELWKPNLRA 572
>DICTYBASE|DDB_G0275257 [details] [associations]
symbol:top3 "DNA topoisomerase III" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0003917
"DNA topoisomerase type I activity" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013826 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 dictyBase:DDB_G0275257
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
GenomeReviews:CM000151_GR EMBL:AAFI02000013 GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
KO:K03165 Gene3D:1.10.290.10 RefSeq:XP_643754.2 HSSP:O29238
ProteinModelPortal:Q8T2T7 STRING:Q8T2T7 EnsemblProtists:DDB0234226
GeneID:8619798 KEGG:ddi:DDB_G0275257 OMA:IKRLWIN Uniprot:Q8T2T7
Length = 828
Score = 578 (208.5 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
Identities = 123/359 (34%), Positives = 196/359 (54%)
Query: 207 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDL------TLNLNGVAVSVTWSRGHIF 260
+ISYGPCQ PTLGF VER+ +I FKPE +W L + T + + V+ +W R +F
Sbjct: 232 IISYGPCQFPTLGFVVERYFRIVNFKPEDFWHLSVVHEKMDTSSGKMIPVTFSWCRNRLF 291
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D + + ++ TVVDV +S +S+ +P L T+EL + AS L + MQ A
Sbjct: 292 DYTAAFILYEKCLDNTEATVVDV-TSKESRYRPVPLTTIELQKAASKKLRISSVQTMQYA 350
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNG-ISKPRKGKDV 379
E LYT+G +SYPRTET + DL ++ Q S+P+WG + +++N P+ GK+
Sbjct: 351 EELYTKGLISYPRTETDSFQAGTDLKGLIGNQASNPEWGAYASRLINNNQFVYPKSGKNN 410
Query: 380 GD-HPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
+ HPPI PT AT L G+ ++YD+I R F+ + V+ + E F+
Sbjct: 411 DNSHPPIHPTSSATG--LSGNLKKIYDFITRRFLACCSEESVFANTTVTIDIQGERFSET 468
Query: 439 AKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
+L G+ V + ++ IP ++ G+ + + + + T P Y+TE+EL++ M+
Sbjct: 469 GTMVLKLGYLEVYPFDKRNDKLIPTYQKGERFTPKRIDLTKGTTVAPHYITEAELLTAMD 528
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRSA 557
+ IGTDA++ HI I R YV + VP++LG+ LV Y+ + E +P +R+A
Sbjct: 529 NNKIGTDATMATHIQTIQDRFYVKKNESNQFVPSNLGVSLVASYELMGFEFSKPNLRAA 587
Score = 319 (117.4 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
Identities = 66/153 (43%), Positives = 89/153 (58%)
Query: 45 FGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEA 104
F D + TSV GH+M +D ++ W DP++LF P K + K L L E
Sbjct: 49 FNDCEM-TFTSVTGHLMEIDVVEQFKPWASCDPIQLFDAPIRKTVPSDKEPLKKTLEREI 107
Query: 105 KDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLV 164
K + L+LWLDCD+EGENI FEV+E + N +RA FSAI ++I A NL
Sbjct: 108 KKADILILWLDCDREGENIAFEVLEVCK---NAKKKFEFYRAHFSAIIPREIDRACKNLA 164
Query: 165 KPNIFEARSVDARQELDLRIGCAFTRYQTKFFQ 197
KPN ++ +VD R E+DLRIG AFTR+QT + +
Sbjct: 165 KPNEKDSIAVDTRMEIDLRIGAAFTRFQTLYLK 197
>GENEDB_PFALCIPARUM|PF13_0251 [details] [associations]
symbol:PF13_0251 "DNA topoisomerase III,
putative" species:5833 "Plasmodium falciparum" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
Pfam:PF01131 PRINTS:PR00417 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694 EMBL:AL844509
GO:GO:0006265 GO:GO:0003918 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 KO:K03165 Gene3D:1.10.290.10 HOGENOM:HOG000184377
OMA:IGLMDAN RefSeq:XP_001350185.1 ProteinModelPortal:Q8IDM7
EnsemblProtists:PF13_0251:mRNA GeneID:814216 KEGG:pfa:PF13_0251
EuPathDB:PlasmoDB:PF3D7_1347100 ProtClustDB:CLSZ2514997
Uniprot:Q8IDM7
Length = 710
Score = 480 (174.0 bits), Expect = 5.2e-86, Sum P(2) = 5.2e-86
Identities = 105/321 (32%), Positives = 176/321 (54%)
Query: 244 NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMR 303
N + V TWSR +FD + ++ + K + +V S K KP LNT+++ +
Sbjct: 334 NKHNNVVDFTWSRIRLFDHLAVILIYEELLKNPLCKITNVYESETRKYKPYPLNTLQMTK 393
Query: 304 VASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVR 363
+ S + M +AE+LY +GY+SYPRTET +P++ +L ++ + + ++G +
Sbjct: 394 LVSIYFKISSKECMMLAEKLYNKGYISYPRTETNYFPDSMNLHKIINELRKNDNFGWYAN 453
Query: 364 EVLS-NGISKPRKGKDVGD--HPPITPTKLATRT-QLDGDAWRLYDYIVRHFIGTLCGDL 419
++ + KPRKGK + D HPPI P K ++ +++ W+LY++I +HF+ D
Sbjct: 454 KLCEEHKYQKPRKGK-MNDKAHPPIHPVKNMNKSLKVEEKEWKLYEFICKHFLAVCSNDA 512
Query: 420 V-YTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMV 478
+ Y KV + +E F + + + + T+ ++ IP F+ D S+ +
Sbjct: 513 IGYNTKVTA-KIQEEQFFCKGLKIKEKNYLEIYTYEKWNDKIIPSFQVDDEFYPTSLLIE 571
Query: 479 ERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
E T PP YL+ES L++LM+K IGTDA++ HI NI +RNYV S +PT+LGI L
Sbjct: 572 EGITQPPKYLSESNLLTLMDKFSIGTDATMHEHIENIQKRNYVIKNSKSLFIPTNLGIAL 631
Query: 539 VHGYQK---IDRELVEPTMRS 556
V Y+K I +L +P++R+
Sbjct: 632 VQSYKKFKDIGIDLTDPSLRA 652
Score = 404 (147.3 bits), Expect = 5.2e-86, Sum P(2) = 5.2e-86
Identities = 89/198 (44%), Positives = 118/198 (59%)
Query: 47 DLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKD 106
D+ +TSV GH+ F +Y NW DP ELF K + L +K+
Sbjct: 50 DIWYMYVTSVTGHLTDQKFDDRYKNWHNTDPQELFDAEITVYVEKDKKNIENNLKKYSKE 109
Query: 107 CEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKP 166
C L+LWLDCD+EGE+ICFEV+ A R I N + RA+FSA+T+KDI A+ NL +P
Sbjct: 110 CNMLILWLDCDREGEHICFEVINACR--IT-NRKLIIHRAQFSAVTEKDIIHAINNLKEP 166
Query: 167 NIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL---DASLISYGPCQTPTLGFCVE 223
N A SVD R+E+DLR+G FTR+ T +Y +L + S+ISYGPCQ PTLGF V
Sbjct: 167 NKNLAYSVDVRREIDLRMGSIFTRFMTI----RYIELVKHETSIISYGPCQFPTLGFVVN 222
Query: 224 RHDKIRTFKPEPYWLLDL 241
R+ I+ FK E YW + +
Sbjct: 223 RYLDIKNFKNEYYWSIKM 240
>UNIPROTKB|Q8IDM7 [details] [associations]
symbol:PF13_0251 "DNA topoisomerase III, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
Pfam:PF01131 PRINTS:PR00417 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694 EMBL:AL844509
GO:GO:0006265 GO:GO:0003918 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 KO:K03165 Gene3D:1.10.290.10 HOGENOM:HOG000184377
OMA:IGLMDAN RefSeq:XP_001350185.1 ProteinModelPortal:Q8IDM7
EnsemblProtists:PF13_0251:mRNA GeneID:814216 KEGG:pfa:PF13_0251
EuPathDB:PlasmoDB:PF3D7_1347100 ProtClustDB:CLSZ2514997
Uniprot:Q8IDM7
Length = 710
Score = 480 (174.0 bits), Expect = 5.2e-86, Sum P(2) = 5.2e-86
Identities = 105/321 (32%), Positives = 176/321 (54%)
Query: 244 NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMR 303
N + V TWSR +FD + ++ + K + +V S K KP LNT+++ +
Sbjct: 334 NKHNNVVDFTWSRIRLFDHLAVILIYEELLKNPLCKITNVYESETRKYKPYPLNTLQMTK 393
Query: 304 VASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVR 363
+ S + M +AE+LY +GY+SYPRTET +P++ +L ++ + + ++G +
Sbjct: 394 LVSIYFKISSKECMMLAEKLYNKGYISYPRTETNYFPDSMNLHKIINELRKNDNFGWYAN 453
Query: 364 EVLS-NGISKPRKGKDVGD--HPPITPTKLATRT-QLDGDAWRLYDYIVRHFIGTLCGDL 419
++ + KPRKGK + D HPPI P K ++ +++ W+LY++I +HF+ D
Sbjct: 454 KLCEEHKYQKPRKGK-MNDKAHPPIHPVKNMNKSLKVEEKEWKLYEFICKHFLAVCSNDA 512
Query: 420 V-YTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMV 478
+ Y KV + +E F + + + + T+ ++ IP F+ D S+ +
Sbjct: 513 IGYNTKVTA-KIQEEQFFCKGLKIKEKNYLEIYTYEKWNDKIIPSFQVDDEFYPTSLLIE 571
Query: 479 ERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
E T PP YL+ES L++LM+K IGTDA++ HI NI +RNYV S +PT+LGI L
Sbjct: 572 EGITQPPKYLSESNLLTLMDKFSIGTDATMHEHIENIQKRNYVIKNSKSLFIPTNLGIAL 631
Query: 539 VHGYQK---IDRELVEPTMRS 556
V Y+K I +L +P++R+
Sbjct: 632 VQSYKKFKDIGIDLTDPSLRA 652
Score = 404 (147.3 bits), Expect = 5.2e-86, Sum P(2) = 5.2e-86
Identities = 89/198 (44%), Positives = 118/198 (59%)
Query: 47 DLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKD 106
D+ +TSV GH+ F +Y NW DP ELF K + L +K+
Sbjct: 50 DIWYMYVTSVTGHLTDQKFDDRYKNWHNTDPQELFDAEITVYVEKDKKNIENNLKKYSKE 109
Query: 107 CEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKP 166
C L+LWLDCD+EGE+ICFEV+ A R I N + RA+FSA+T+KDI A+ NL +P
Sbjct: 110 CNMLILWLDCDREGEHICFEVINACR--IT-NRKLIIHRAQFSAVTEKDIIHAINNLKEP 166
Query: 167 NIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL---DASLISYGPCQTPTLGFCVE 223
N A SVD R+E+DLR+G FTR+ T +Y +L + S+ISYGPCQ PTLGF V
Sbjct: 167 NKNLAYSVDVRREIDLRMGSIFTRFMTI----RYIELVKHETSIISYGPCQFPTLGFVVN 222
Query: 224 RHDKIRTFKPEPYWLLDL 241
R+ I+ FK E YW + +
Sbjct: 223 RYLDIKNFKNEYYWSIKM 240
>RGD|1309320 [details] [associations]
symbol:Top3a "topoisomerase (DNA) III alpha" species:10116
"Rattus norvegicus" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA;ISO] [GO:0005694 "chromosome" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA;ISO] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016605 "PML body"
evidence=ISO] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
Pfam:PF01131 Pfam:PF01396 Pfam:PF06839 PRINTS:PR00417 SMART:SM00436
SMART:SM00437 Pfam:PF01751 RGD:1309320 InterPro:IPR006171
GO:GO:0005694 GO:GO:0008270 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 IPI:IPI00951502
Ensembl:ENSRNOT00000068351 UCSC:RGD:1309320 ArrayExpress:D4A6J4
Uniprot:D4A6J4
Length = 949
Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
Identities = 205/560 (36%), Positives = 307/560 (54%)
Query: 5 VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMTSVCGH 59
V+K++ +E A + LL+ ++R G ++E+ L+G V MTSV GH
Sbjct: 33 VRKVLCVAEKNDAAKGIADLLSNGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGH 92
Query: 60 IMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
++ DF ++ W +PL LF EK + + L E + C+ LV+W DCD+E
Sbjct: 93 LLAHDFQMQFRKWSSCNPLVLFEAEIEKYCPENFIDIKKTLERETQHCQALVIWTDCDRE 152
Query: 120 GENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE 179
GENI FE++ + + V RARFS IT ++AA +L +P+ + +VD RQE
Sbjct: 153 GENIGFEIIHVCKA---VKPNLQVLRARFSEITHHAVRAACEHLTEPDQRVSDAVDVRQE 209
Query: 180 LDLRIGCAFTRYQTKFFQGKYGDLDAS-LISYGPCQTPTLGFCVERHDKIRTFKPEPYWL 238
LDLRIG AFTR+QT Q + ++ A LISYG CQ PTLGF VER I+ F PE +
Sbjct: 210 LDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHR 269
Query: 239 LDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNT 298
+ +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +PQAL+T
Sbjct: 270 IKVTHDHKDGTVEFNWKRYRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDT 329
Query: 299 VELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDW 358
VEL ++AS L + M+IAE+LYTQG S P T P + ++ RQ + + +
Sbjct: 330 VELEKLASRKLRINAKETMRIAEKLYTQGG-SLP--SLTSIPGD-PMLTSERQTDGTQMY 385
Query: 359 GDHVREVLSNGISKPRKGKDVGD--HPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLC 416
+ ++N +P D D HPPI PTK + L GD RLY++IVRHF+
Sbjct: 386 --IFTKQIANESERPPPKWDKSDQAHPPIHPTKYTS--SLQGDDRRLYEFIVRHFLACCS 441
Query: 417 GDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVK 476
D + + +A E F +L + V + ++ +P ++ G +V+
Sbjct: 442 QDAQGQETTVEIDIAQERFVAHGLIILARNYLDVYPYDHWSDKLLPVYEQGFRFQPSTVE 501
Query: 477 MVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGI 536
MV+ +T+PP LTE++LI+LMEKHGIGTDA+ HI I R YV +TS +R +P LG+
Sbjct: 502 MVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHLGM 561
Query: 537 VLVHGYQKIDRELVEPTMRS 556
LV GY + E+ +P +R+
Sbjct: 562 GLVEGYDSMGYEMSKPNLRA 581
>CGD|CAL0003329 [details] [associations]
symbol:orf19.5934 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0031422 "RecQ helicase-Topo III
complex" evidence=IEA] [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0043007 "maintenance of rDNA"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IEA]
[GO:0007004 "telomere maintenance via telomerase" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0007064 "mitotic sister chromatid cohesion" evidence=IEA]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
Pfam:PF01131 PRINTS:PR00417 SMART:SM00436 SMART:SM00437
CGD:CAL0003329 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
EMBL:AACQ01000003 EMBL:AACQ01000004 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165
Gene3D:1.10.290.10 RefSeq:XP_722999.1 RefSeq:XP_723146.1
STRING:Q5ANG9 GeneID:3635251 GeneID:3635329 KEGG:cal:CaO19.13355
KEGG:cal:CaO19.5934 Uniprot:Q5ANG9
Length = 629
Score = 820 (293.7 bits), Expect = 9.4e-82, P = 9.4e-82
Identities = 187/517 (36%), Positives = 284/517 (54%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GHI GLDF S ++ W P LF K T K + +A EA++ + L++
Sbjct: 55 MTSVAGHITGLDFGSAFS-WGNCVPGRLFEADI-KTIITKK-SIYENIAEEARNADKLMI 111
Query: 113 WLDCDKEGENICFEVMEAVRHQININ-SPKTVWRARFSAITDKDIKAAMWNLVKPNIFEA 171
W DCD+EGE I FE+M A R + N N +WRARFS + I A N V ++
Sbjct: 112 WTDCDREGEYIGFEIMNAAR-KYNRNLGLNNIWRARFSHLERNHIIRAAKNPVNLDMSAV 170
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDAS-LISYGPCQTPTLGFCVERHDKIRT 230
+V R E+DLR+G +FTR T + K G ++ + L SYG CQ PTLGF V+R+ ++++
Sbjct: 171 SAVSCRMEIDLRVGTSFTRLLTDQLRQK-GIIEKNELASYGTCQFPTLGFVVDRYKRVKS 229
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFF-KAVEKEKHVTVVDVQSSTKS 289
F PEP+W +++ W RGH FDK + + + + + T+ ++S K
Sbjct: 230 FTPEPFWYIEIETRKENKKTIFNWVRGHFFDKMYVVMLYDRCCKSGEFGTISKIESKRKP 289
Query: 290 KTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVL 349
+P L TVEL + + M A+ AERLY GY+SYPRTET ++ + D ++L
Sbjct: 290 NFRPFPLTTVELQKDCARFFKMSAKTALAAAERLYNLGYLSYPRTETDRFAKETDFKSLL 349
Query: 350 RQQESSPDWGDHVREVLSNGISKPRKGK-DVGDHPPITPTKLATRTQLDG-DAWRLYDYI 407
+ P WG + ++L+ G PR G D HPPI P K + L+ D ++Y+Y+
Sbjct: 350 EVHKQDPRWGSYTTKLLNEGFETPRSGSHDDKAHPPIHPIKYVSLDTLNTLDEKKVYEYV 409
Query: 408 VRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKN-ESIPDFKP 466
VR FI D V TQ V DE FT + + V T+ ++ + +P F
Sbjct: 410 VRRFIACCSKDAVGTQTVVTLKWGDEFFTASGLMVHEKNYLEVYTYKKWESSKQLPKFTE 469
Query: 467 GDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVT-VTS 525
G+ + + S + + KT+PP+++TE ELI+LM+ +GIGTDA+I HIN I R+Y+ +
Sbjct: 470 GEQVKLSSGILKDGKTSPPNHMTEPELIALMDANGIGTDATIAEHINKIETRHYINKLKK 529
Query: 526 GRR--LVPTSLGIVLVHGYQKIDRE---LVEPTMRSA 557
G+ ++PT LG+ L+ G +K++ E L +P +R +
Sbjct: 530 GKNEYILPTPLGMGLIEGLEKMEFEDVSLSKPFLRKS 566
>ASPGD|ASPL0000072189 [details] [associations]
symbol:AN4555 species:162425 "Emericella nidulans"
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
[GO:0006268 "DNA unwinding involved in replication" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0043007 "maintenance of rDNA"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
EMBL:BN001303 EMBL:AACD01000078 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165
Gene3D:1.10.290.10 HOGENOM:HOG000184377 OMA:IGLMDAN
OrthoDB:EOG4KWP2D RefSeq:XP_662159.1 ProteinModelPortal:Q5B4H5
STRING:Q5B4H5 EnsemblFungi:CADANIAT00005883 GeneID:2872352
KEGG:ani:AN4555.2 Uniprot:Q5B4H5
Length = 629
Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
Identities = 179/517 (34%), Positives = 272/517 (52%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ L+F +Y+ W P LF P + K + + +A ++LV+
Sbjct: 59 MTSVLGHLTSLEFERQYSGWASCPPAALFEAPVKIAVDDDKKAIANNIMKQATHSQYLVI 118
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I EV + + N V RA+F+ + A +L++ + +A
Sbjct: 119 WTDCDREGEHIGTEVRDQAKAG---NGRIVVKRAKFNNTEKIHVLNAARSLIELDERQAN 175
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+V AR ELDLRIG AFTR T Q + L +ISYG CQ PTLGF V+R+ +++ FK
Sbjct: 176 AVAARIELDLRIGAAFTRLLTLQLQNLHATLTQKVISYGSCQFPTLGFVVDRYLRVKRFK 235
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE +W + + +G+ VS W+R H+FD++ + + V V SK +
Sbjct: 236 PETFWGIKVMHTRDGIKVSFLWNRVHLFDRAAVTIMLERCLMATKAEVTKVNQKPTSKWR 295
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L TV+L + + L M M+IAE LYT+G++SYPRTET Q+ + DL ++ +Q
Sbjct: 296 PLPLTTVDLQMMGTKYLRMDSAKVMKIAENLYTKGFISYPRTETDQFDKGIDLKKLIEKQ 355
Query: 353 ESSPDWGDHVREVLSNGISKPRKGKDVGD-HPPITPTKLATRTQLDGDAWRLYDYIVRHF 411
WG++ R +L PR G+ HPPI P T L D ++Y+++ R F
Sbjct: 356 LPDERWGEYARCLLGGNFRTPRAGRHNDQAHPPIHPVCWVNPTTLTEDERKVYEFVTRRF 415
Query: 412 IGTLCGDLVYTQKV-AKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKN-ESIPDFKPGDL 469
+ C D Q + DEMF +L + V + ++ + +P+++ G+L
Sbjct: 416 LAC-CSDDAKGQSTDVEIRYGDEMFHAHGLLVLERNYLDVYVYDKWESTQQLPNYQVGEL 474
Query: 470 IPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYV---TVTSG 526
M + KT+PP+YLTE ELI LM+ +GIGTDA++ HI I R Y+ T SG
Sbjct: 475 FEPTEANMFDGKTSPPNYLTEPELIGLMDANGIGTDATMAEHIERIKSREYIGEMTRGSG 534
Query: 527 RR----LVPTSLGIVLVHGYQKIDRELVE-PTMRSAY 558
R L+PT LGI L+ GY+ + L + P++ +
Sbjct: 535 RNAVKLLIPTRLGIALILGYEDVFAGLADSPSLSKPF 571
>UNIPROTKB|C9JEI7 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR013497 InterPro:IPR013824
Pfam:PF01131 SMART:SM00436 Pfam:PF01751 InterPro:IPR006171
GO:GO:0007059 GO:GO:0000793 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012 HGNC:HGNC:11993
HOGENOM:HOG000184378 IPI:IPI01014062 ProteinModelPortal:C9JEI7
STRING:C9JEI7 Ensembl:ENST00000424393 ArrayExpress:C9JEI7
Bgee:C9JEI7 Uniprot:C9JEI7
Length = 246
Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
Identities = 148/212 (69%), Positives = 171/212 (80%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQINI--NSPKTVWRAR 147
A PKL + FL E + C+++VLWLDCDKEGENICFEV++AV +N KTV+RAR
Sbjct: 92 ANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKAHGGEKTVFRAR 151
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
FS+ITD DI AM L +P+ EA SVDARQELDLRIGCAFTR+QTK+FQGKYGDLD+SL
Sbjct: 152 FSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSL 211
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLL 239
IS+GPCQTPTLGFCVERHDKI++FKPE YW+L
Sbjct: 212 ISFGPCQTPTLGFCVERHDKIQSFKPETYWVL 243
>POMBASE|SPBC16G5.12c [details] [associations]
symbol:top3 "DNA topoisomerase III" species:4896
"Schizosaccharomyces pombe" [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0000280 "nuclear division"
evidence=IMP] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=TAS] [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006259
"DNA metabolic process" evidence=IGI] [GO:0006261 "DNA-dependent
DNA replication" evidence=IMP] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IMP]
[GO:0031297 "replication fork processing" evidence=NAS] [GO:0031422
"RecQ helicase-Topo III complex" evidence=TAS] [GO:0043007
"maintenance of rDNA" evidence=IMP] [GO:0045910 "negative
regulation of DNA recombination" evidence=TAS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 PomBase:SPBC16G5.12c Pfam:PF01751 InterPro:IPR006171
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0000070 GO:GO:0045910 GO:GO:0031297
GO:GO:0000712 GO:GO:0007000 GO:GO:0043007 GO:GO:0006265
PROSITE:PS50880 GO:GO:0031422 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165 Gene3D:1.10.290.10
HOGENOM:HOG000184377 OMA:IGLMDAN EMBL:AF126287 PIR:T39604
RefSeq:NP_596761.1 ProteinModelPortal:O60126 STRING:O60126
EnsemblFungi:SPBC16G5.12c.1 GeneID:2539881 KEGG:spo:SPBC16G5.12c
OrthoDB:EOG4KWP2D NextBio:20801026 Uniprot:O60126
Length = 622
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 170/520 (32%), Positives = 268/520 (51%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ F S+Y++W V LF + L + EA++ ++L +
Sbjct: 55 MTSVSGHLTEASFPSEYSSWSSVPQDVLFDAQIITSVSKNAEVLADNIKKEARNAQYLYI 114
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE+I E+ R N V RA F+ + I +A + A
Sbjct: 115 WTDCDREGEHIGVEISNVARAS---NPSIQVIRADFNNLERSHIISAAKRPRDVSKNAAD 171
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFK 232
+VDAR ELD R+G FTR QT Q + L +ISYGPCQ PTLGF V+R ++ F
Sbjct: 172 AVDARIELDFRLGAIFTRLQTIQLQKSFDILQNKIISYGPCQFPTLGFVVDRWQRVEDFV 231
Query: 233 PEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTK 292
PE YW L G + W R +FD+ T + + + K VV++ K+K K
Sbjct: 232 PETYWHLRFVDKRQGKTIQFNWERAKVFDRLTTMIILENCLECKTAKVVNITQKPKTKYK 291
Query: 293 PQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQ 352
P L+TVEL ++ L + +++AE LYT G+VSYPRTET Q+ + +L A++++
Sbjct: 292 PLPLSTVELTKLGPKHLRISAKKTLELAENLYTNGFVSYPRTETDQFDSSMNLHAIIQKL 351
Query: 353 ESSPDWGDHVREVLSNGISKPRKGKDVGD--HPPITPTKLATRTQLDG-DAWRLYDYIVR 409
+ +W + +L+ PRKGK D HPPI P ++ R+ L D W++Y+ I R
Sbjct: 352 TGAQEWDSYAEGLLAGDYRPPRKGKH-NDRAHPPIHPVQMVHRSALPSQDHWKVYELITR 410
Query: 410 HFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKN-ESIPDFKPGD 468
F+ + + + + + +E+F+ + + + V + ++ + +P+++ +
Sbjct: 411 RFLACCSDNAKGAETLVQVKMEEELFSKKGLLVTEKNYLEVYPYEKWESSDQLPEYRLHE 470
Query: 469 LIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGR- 527
+ M++ T+ P Y+TE ELI+LM+ +GIGTDA++ HI + +R YV R
Sbjct: 471 EFQPHILDMMDSSTSSPSYITEPELIALMDANGIGTDATMAEHIEKVQEREYVIKRKKRG 530
Query: 528 ----RLVPTSLGIVLVHGYQKIDRE--LVEPTMRSAYRVQ 561
VP+SLG+ L GY +I E L +P +R VQ
Sbjct: 531 QGVTEFVPSSLGVALAKGYDEIGLEWSLTKPFLRKEMEVQ 570
>UNIPROTKB|E7EWY2 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013826 InterPro:IPR023406 Pfam:PF01131 PROSITE:PS00396
SMART:SM00437 GO:GO:0005694 GO:GO:0006265 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 Gene3D:1.10.290.10 EMBL:D87012 HGNC:HGNC:11993
IPI:IPI00908525 ProteinModelPortal:E7EWY2 SMR:E7EWY2
Ensembl:ENST00000413067 ArrayExpress:E7EWY2 Bgee:E7EWY2
Uniprot:E7EWY2
Length = 282
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 138/238 (57%), Positives = 167/238 (70%)
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 1 MFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQ 60
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D GDHPPIT
Sbjct: 61 GYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPIT 120
Query: 387 PTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPG 446
P K AT +L GDAWRLY+YI RHFI T+ D Y Q F + E+FT K +L PG
Sbjct: 121 PMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPG 180
Query: 447 FTGVMTWSAMK-NESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIG 503
FT VM W ++ ES+P + GD P+ VKM+E++T PPDYLTE+ELI+LMEKHGIG
Sbjct: 181 FTEVMPWQSVPLEESLPTCQRGDAFPVGEVKMLEKQTNPPDYLTEAELITLMEKHGIG 238
>UNIPROTKB|H7BZN5 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
GO:GO:0006265 EMBL:AC127537 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 HGNC:HGNC:11992 ProteinModelPortal:H7BZN5
Ensembl:ENST00000412083 Uniprot:H7BZN5
Length = 384
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 151/383 (39%), Positives = 217/383 (56%)
Query: 1 MHLR-VKKLVPASEIKLARPSLISLLTP--LQRMNGACS---VHEWVGPLFGDLVLFKMT 54
M LR V+K++ +E A + LL+ ++R G ++E+ L+G V MT
Sbjct: 3 MALRGVRKVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMT 62
Query: 55 SVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWL 114
SV GH++ DF ++ W +PL LF EK + + L E + C+ LV+W
Sbjct: 63 SVSGHLLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWT 122
Query: 115 DCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSV 174
DCD+EGENI FE++ + + V RARFS IT ++ A NL +P+ + +V
Sbjct: 123 DCDREGENIGFEIIHVCKA---VKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAV 179
Query: 175 DARQELDLRIGCAFTRYQTKFFQGKYGDLDAS-LISYGPCQTPTLGFCVERHDKIRTFKP 233
D RQELDLRIG AFTR+QT Q + ++ A LISYG CQ PTLGF VER I+ F P
Sbjct: 180 DVRQELDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVP 239
Query: 234 EPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKP 293
E + + +T + V W R +F+ + C V ++ ++ TVV+V+S KSK +P
Sbjct: 240 EIFHRIKVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCVEDPMATVVEVRSKPKSKWRP 299
Query: 294 QALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPENFDLVAVLRQQE 353
QAL+TVEL ++AS L + M+IAE+LYTQGY+SYPRTET +P + +L ++ QQ
Sbjct: 300 QALDTVELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQT 359
Query: 354 SSPDWGDHVREVLSNGISKPRKG 376
P WG + +L G PR G
Sbjct: 360 PDPRWGAFAQSILERGGPTPRNG 382
>SGD|S000004224 [details] [associations]
symbol:TOP3 "DNA Topoisomerase III" species:4932
"Saccharomyces cerevisiae" [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0031422
"RecQ helicase-Topo III complex" evidence=IDA;IPI] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IGI;IMP] [GO:0007004 "telomere maintenance
via telomerase" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA;IDA]
[GO:0000018 "regulation of DNA recombination" evidence=IMP]
[GO:0007064 "mitotic sister chromatid cohesion" evidence=IMP]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 SGD:S000004224 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 EMBL:BK006945
EMBL:U19027 GO:GO:0007131 GO:GO:0007004 GO:GO:0007064 GO:GO:0000018
GO:GO:0006265 PROSITE:PS50880 GO:GO:0031422 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
GeneTree:ENSGT00530000063430 KO:K03165 Gene3D:1.10.290.10
HOGENOM:HOG000184377 OrthoDB:EOG4KWP2D EMBL:M24939 PIR:A33169
RefSeq:NP_013335.1 ProteinModelPortal:P13099 DIP:DIP-2912N
IntAct:P13099 MINT:MINT-442624 STRING:P13099 PaxDb:P13099
PeptideAtlas:P13099 EnsemblFungi:YLR234W GeneID:850935
KEGG:sce:YLR234W CYGD:YLR234w OMA:CCSEDAK NextBio:967378
Genevestigator:P13099 GermOnline:YLR234W Uniprot:P13099
Length = 656
Score = 315 (115.9 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 71/204 (34%), Positives = 109/204 (53%)
Query: 204 DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNL--NGVAVSVTWSRGHIFD 261
D+ ++SYG CQ PTLGF V+R ++IR F PE +W + L + NG + W RGH+FD
Sbjct: 225 DSQVVSYGTCQFPTLGFVVDRFERIRNFVPEEFWYIQLVVENKDNGGTTTFQWDRGHLFD 284
Query: 262 KSTCNVFFKA-VEKEKHVT-VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQI 319
+ + F++ +E +V VVD++S +K +P L TVEL + + L + ++
Sbjct: 285 RLSVLTFYETCIETAGNVAQVVDLKSKPTTKYRPLPLTTVELQKNCARYLRLNAKQSLDA 344
Query: 320 AERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPD--------WGDHVREVL----- 366
AE+LY +G++SYPRTET +P DL +++ +Q W + +L
Sbjct: 345 AEKLYQKGFISYPRTETDTFPHAMDLKSLVEKQAQLDQLAAGGRTAWASYAASLLQPENT 404
Query: 367 --SNGISKPRKGK-DVGDHPPITP 387
+N PR G D HPPI P
Sbjct: 405 SNNNKFKFPRSGSHDDKAHPPIHP 428
Score = 303 (111.7 bits), Expect = 4.1e-46, Sum P(2) = 4.1e-46
Identities = 69/207 (33%), Positives = 110/207 (53%)
Query: 53 MTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVL 112
MTSV GH+ G+DF+ + W K ELF P + + K+ + + EA++ ++L++
Sbjct: 58 MTSVAGHLTGIDFSHDSHGWGKCAIQELFDAPLNEIMNNNQKKIASNIKREARNADYLMI 117
Query: 113 WLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEAR 172
W DCD+EGE I +E+ + + + V+RA FS + + I A N + ++
Sbjct: 118 WTDCDREGEYIGWEIWQEAKRGNRLIQNDQVYRAVFSHLERQHILNAARNPSRLDMKSVH 177
Query: 173 SVDARQELDLRIGCAFTRYQTKFFQGKY---------------GDL-DASLISYGPCQTP 216
+V R E+DLR G FTR T+ + K G+ D+ ++SYG CQ P
Sbjct: 178 AVGTRIEIDLRAGVTFTRLLTETLRNKLRNQATMTKDGAKHRGGNKNDSQVVSYGTCQFP 237
Query: 217 TLGFCVERHDKIRTFKPEPYWLLDLTL 243
TLGF V+R ++IR F PE +W + L +
Sbjct: 238 TLGFVVDRFERIRNFVPEEFWYIQLVV 264
Score = 255 (94.8 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 66/188 (35%), Positives = 91/188 (48%)
Query: 367 SNGISKPRKGK-DVGDHPPITP-TKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQK 424
+N PR G D HPPI P L + R+Y+Y+ RHF+ D
Sbjct: 407 NNKFKFPRSGSHDDKAHPPIHPIVSLGPEANVSPVERRVYEYVARHFLACCSEDAKGQSM 466
Query: 425 VAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKN-ESIPDFKPGDLIPIQSVKMVERKTT 483
A E F+ +L F V W+ + + +P + L+ I +M T
Sbjct: 467 TLVLDWAVERFSASGLVVLERNFLDVYPWARWETTKQLPRLEMNALVDIAKAEMKAGTTA 526
Query: 484 PPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTS-GRR--LVPTSLGIVLVH 540
PP +TESELI LM+ +GIGTDA+I HI+ I RNYV G+ L PT+LG+ LVH
Sbjct: 527 PPKPMTESELILLMDTNGIGTDATIAEHIDKIQVRNYVRSEKVGKETYLQPTTLGVSLVH 586
Query: 541 GYQKIDRE 548
G++ I E
Sbjct: 587 GFEAIGLE 594
>UNIPROTKB|H7C4B0 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR013497 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 PROSITE:PS00396 GO:GO:0005694 GO:GO:0006265
GO:GO:0003917 InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
Gene3D:1.10.290.10 EMBL:D87012 HGNC:HGNC:11993
ProteinModelPortal:H7C4B0 Ensembl:ENST00000436282 Bgee:H7C4B0
Uniprot:H7C4B0
Length = 168
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 79/130 (60%), Positives = 93/130 (71%)
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
+F + EK V K+K +P ALNTVE++RVASS LGMGP HAMQ AERLYTQ
Sbjct: 4 MFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQ 63
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY+SYPRTETT YPENFDL LRQQ + P W D V+ +L+ GI++PRKG D GDHPPIT
Sbjct: 64 GYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPIT 123
Query: 387 PTKLATRTQL 396
P K AT +L
Sbjct: 124 PMKSATEAEL 133
>UNIPROTKB|F2Z2A5 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR000380
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694 GO:GO:0006265
SMART:SM00493 GO:GO:0003917 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 EMBL:D87012 HGNC:HGNC:11993 IPI:IPI00878002
Ensembl:ENST00000444502 Ensembl:ENST00000457179 Uniprot:F2Z2A5
Length = 129
Score = 368 (134.6 bits), Expect = 1.4e-33, P = 1.4e-33
Identities = 66/97 (68%), Positives = 75/97 (77%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFE 126
A PKL + FL E + C+++VLWLDCDKEGENICFE
Sbjct: 92 ANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFE 128
>UNIPROTKB|C9JT00 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] InterPro:IPR000380
Pfam:PF01751 InterPro:IPR006171 GO:GO:0007059 GO:GO:0000793
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012 HGNC:HGNC:11993
HOGENOM:HOG000169036 IPI:IPI00877734 ProteinModelPortal:C9JT00
STRING:C9JT00 Ensembl:ENST00000437929 ArrayExpress:C9JT00
Bgee:C9JT00 Uniprot:C9JT00
Length = 122
Score = 333 (122.3 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 60/91 (65%), Positives = 69/91 (75%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKEG 120
A PKL + FL E + C+++VLWLDCDKEG
Sbjct: 92 ANPKLNMVKFLQVEGRGCDYIVLWLDCDKEG 122
>UNIPROTKB|C9JKE2 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] InterPro:IPR000380
Pfam:PF01751 InterPro:IPR006171 GO:GO:0007059 GO:GO:0000793
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012 HGNC:HGNC:11993
IPI:IPI00879445 ProteinModelPortal:C9JKE2 STRING:C9JKE2
Ensembl:ENST00000430142 HOGENOM:HOG000169036 ArrayExpress:C9JKE2
Bgee:C9JKE2 Uniprot:C9JKE2
Length = 121
Score = 327 (120.2 bits), Expect = 5.8e-29, P = 5.8e-29
Identities = 59/90 (65%), Positives = 68/90 (75%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHIMGLDFTSKYNNWDKVDPLELFS-CPTEKRE 89
+NGACSVHE+ G G V FKMTSVCGH+M LDF KYN WDKVDP ELFS PTEK+E
Sbjct: 32 LNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKE 91
Query: 90 ATPKLKLPAFLANEAKDCEFLVLWLDCDKE 119
A PKL + FL E + C+++VLWLDCDKE
Sbjct: 92 ANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
>TIGR_CMR|BA_0375 [details] [associations]
symbol:BA_0375 "DNA topoisomerase III" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005738 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 eggNOG:COG0551
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 RefSeq:NP_842919.1
RefSeq:YP_016995.1 RefSeq:YP_026641.1 HSSP:P14294
ProteinModelPortal:Q81Z97 IntAct:Q81Z97 DNASU:1084121
EnsemblBacteria:EBBACT00000010088 EnsemblBacteria:EBBACT00000017365
EnsemblBacteria:EBBACT00000020979 GeneID:1084121 GeneID:2819802
GeneID:2849354 KEGG:ban:BA_0375 KEGG:bar:GBAA_0375 KEGG:bat:BAS0361
HOGENOM:HOG000086847 KO:K03169 OMA:LSNRRCP ProtClustDB:PRK07726
BioCyc:BANT260799:GJAJ-403-MONOMER
BioCyc:BANT261594:GJ7F-413-MONOMER TIGRFAMs:TIGR01056
Uniprot:Q81Z97
Length = 729
Score = 325 (119.5 bits), Expect = 2.8e-26, P = 2.8e-26
Identities = 129/481 (26%), Positives = 212/481 (44%)
Query: 53 MTSVCGHIMGL----DFTSKYNNWDKVD-PL--ELFSCPTEKREATPKLKLPAFLANEAK 105
+T GH++ L + KY W+ D P+ E K+ + + L K
Sbjct: 38 VTWALGHLVTLADPESYDVKYKKWNLEDLPMLPERLKLTVIKQTGKQFNAVKSQLLR--K 95
Query: 106 DCEFLVLWLDCDKEGENICFEVMEAVRHQININSP-KTVWRARFSAITDKDIKAAMWNLV 164
D +++ D +EGE + +++ VR IN P K +W S++TDK IK NL
Sbjct: 96 DVNEIIVATDAGREGELVARWIIDKVR----INKPIKRLW---ISSVTDKAIKDGFANL- 147
Query: 165 KP-----NIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
KP N++ A +V AR E D IG TR T F + ++ G QTPT+
Sbjct: 148 KPGKAYDNLY-ASAV-ARSEADWYIGLNATRALTTRFNAQ--------LNCGRVQTPTVA 197
Query: 220 FCVERHDKIRTFKPEPYWLLDL-TLNLNGVAVSVTW--SRGHI--FDKSTCNVFFKAVEK 274
R D+I+ FK + Y+ ++ T N + +TW + G+ F+K + K ++K
Sbjct: 198 MIANREDEIKNFKAQTYYGIEAQTTN----QLKLTWQDANGNSRSFNKEKIDGIVKGLDK 253
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYV-SYPR 333
+ TV+++ K P + EL R A+ G + I ++LY Q V +YPR
Sbjct: 254 H-NATVLEIDKKQKKSFSPGLYDLTELQRDANKKFGYSAKETLNIMQKLYEQHKVLTYPR 312
Query: 334 TETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKD-------VGDHPPIT 386
T++ +Y + D+V L ++ + G++ R + + KP K V DH I
Sbjct: 313 TDS-RYISS-DIVGTLPERLKACGVGEY-RPLAHKVLQKPIKANKSFVDDSKVSDHHAII 369
Query: 387 PTKLATRTQLDGDAWR-LYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHP 445
PT+ D R +YD +V+ F+ L Y Q + V +E F K +LH
Sbjct: 370 PTEGYVNFSAFTDKERKIYDLVVKRFLAVLFPAFEYEQLTLRTKVGNETFIARGKTILHA 429
Query: 446 GFTGVM--------TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLM 497
G+ V +K + +P + GD + ++ + +T P E+ L+S M
Sbjct: 430 GWKEVYENRFEDDDVTDDVKEQLLPRIEKGDTLTVKLIMQTSGQTKAPARFNEATLLSAM 489
Query: 498 E 498
E
Sbjct: 490 E 490
>TIGR_CMR|CJE_1854 [details] [associations]
symbol:CJE_1854 "DNA topoisomerase I" species:195099
"Campylobacter jejuni RM1221" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 eggNOG:COG0551
HOGENOM:HOG000004018 KO:K03168 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
TIGRFAMs:TIGR01051 ProtClustDB:PRK05582 RefSeq:YP_179824.1
ProteinModelPortal:Q5HSB1 STRING:Q5HSB1 GeneID:3232481
KEGG:cjr:CJE1854 PATRIC:20045540 OMA:RYTMASI
BioCyc:CJEJ195099:GJC0-1893-MONOMER Uniprot:Q5HSB1
Length = 700
Score = 305 (112.4 bits), Expect = 4.5e-24, P = 4.5e-24
Identities = 121/478 (25%), Positives = 215/478 (44%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L ++AKD + + L D D+EGE I + + +A+ N T+ R F IT I+ A
Sbjct: 68 LKSKAKDAKEVYLATDEDREGEAIAYHIAKAIGKDEN-----TLPRIVFHEITKSAIENA 122
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
+ N K N+ + R+ LD +G Y+ G+ + L S G Q+ L
Sbjct: 123 LKNPRKLNMHSVNAQQTRRLLDRIVG-----YKLSPLLGQ--KIQRGL-SAGRVQSAALK 174
Query: 220 FCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHI-----FDKSTCNVFFKAVEK 274
V+R +IR F P Y+ +D+ + A V + + I +K + +A +
Sbjct: 175 IIVDREKEIRAFVPLEYFSIDMIFQKDLDAELVEFDKAKIEKLTITNKDRAKLILEACKN 234
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY--------TQ 326
E + ++ D++S + P T L + AS+ LG P M IA++LY
Sbjct: 235 EVY-SISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTMMIAQKLYEGVNTHEGVM 293
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
G ++Y RT++ + + V R+ + ++G +N + KG H I
Sbjct: 294 GVITYMRTDSLNLAK--EAVENARKFIQA-NFGKDYLPSKANVYTTKTKGAQEA-HEAIR 349
Query: 387 PTKLATRTQ-----LDGDAWRLYDYIVRHFIGTLCGDLV-YTQKVAKFSVADE-MFTMEA 439
PT L+ + LD D +LY I F+ + TQ V F D +F +
Sbjct: 350 PTNLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMSPAISQTQNV--FVKNDRAVFKISG 407
Query: 440 KYLLHPGFTGVMTWSAM-KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLME 498
+ +L G+ V + M K++ +P+FK G + +Q+++M T PP +E+ L+ +E
Sbjct: 408 RKILFDGYYKV--YGDMDKDKILPNFKIGQNLKVQNLEMNSHFTEPPSRYSEAGLVKKLE 465
Query: 499 KHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
GIG ++ I+ + R+YVT+ ++L+P+ + + +K ++V+ S
Sbjct: 466 SLGIGRPSTYAPTISILTSRDYVTIDK-KQLIPSDVAFNVTEVLEKNFSDIVDSKFTS 522
>TIGR_CMR|BA_1905 [details] [associations]
symbol:BA_1905 "DNA topoisomerase III" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005738 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006265
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 HSSP:P14294
HOGENOM:HOG000086847 KO:K03169 ProtClustDB:PRK07726
TIGRFAMs:TIGR01056 RefSeq:NP_844316.1 RefSeq:YP_018548.1
RefSeq:YP_028031.1 ProteinModelPortal:Q81RY0 DNASU:1086238
EnsemblBacteria:EBBACT00000010748 EnsemblBacteria:EBBACT00000015345
EnsemblBacteria:EBBACT00000022649 GeneID:1086238 GeneID:2818036
GeneID:2849054 KEGG:ban:BA_1905 KEGG:bar:GBAA_1905 KEGG:bat:BAS1767
OMA:GAYMTWA BioCyc:BANT260799:GJAJ-1836-MONOMER
BioCyc:BANT261594:GJ7F-1910-MONOMER InterPro:IPR025589 Pfam:PF13342
Uniprot:Q81RY0
Length = 714
Score = 282 (104.3 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 112/403 (27%), Positives = 174/403 (43%)
Query: 115 DCDKEGENICFEVMEAVRHQINI-NSPKTVWRARFSAITDKDIKAAMWNLVKPN--IFEA 171
D +EGE I VR+ IN+ N K + R S++T + I NL+ + I
Sbjct: 109 DAGREGELI-------VRNIINLCNVQKPMKRLWISSLTKQAIYQGFKNLLDESDTINTY 161
Query: 172 RSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTF 231
R D +G +R + + K G D + S G QTPTL V+R +I F
Sbjct: 162 YEAYTRSCADWVVGMNASRVFSILLKKK-GMND--VFSAGRVQTPTLALIVKREKEIENF 218
Query: 232 KPEPYWLLDLTLNLNGVAVSVTWSRGH---IFDKSTCNVFFKAVEKEKHVTVVDVQSSTK 288
K EP+W + T N+ G W + + + D N A + K V ++++ K
Sbjct: 219 KSEPFWEVFATFNIEGKKYDGKWEKDNESRLQDPDMANKI-AAFCQGKPAVVKEMKTERK 277
Query: 289 SKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPEN----F- 343
P N L A+ P + I + LY +G VSYPR+++ + F
Sbjct: 278 EFQPPLLFNLSSLQATANKAFKFSPKKTLDITQALYQKGIVSYPRSDSNYVTQGEAATFP 337
Query: 344 DLVAVLRQ-QESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATR-TQLDGDAW 401
D++ L Q E V +++N + K V DH I PT+ T ++L GD
Sbjct: 338 DILQKLSQFDEYKGLLPAPVESIMNN--KRYVNEKKVTDHYAIIPTEQVTNPSRLSGDEK 395
Query: 402 RLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEM--FTMEAKYLLHPGFTGVMTWSAMKNE 459
++YD IVR I ++ ++ DE F + K + G+ V+ +E
Sbjct: 396 KIYDMIVRRLIAAHYEVAIFDYTTI-VTLVDERAEFISKGKQQIQEGWRKVIFQDDKDDE 454
Query: 460 SI-PDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHG 501
+I P G+ + VK+ E KT PP TE +LI+LM+ G
Sbjct: 455 TILPIVAEGEEGKVVKVKVKEGKTQPPKRYTEGQLITLMKTAG 497
Score = 65 (27.9 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 22/84 (26%), Positives = 39/84 (46%)
Query: 476 KMVERKTTPPDYLTESELISLMEK-HGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSL 534
+++ T YL EL +++K G+GT+A+ I + R Y+ V + + T
Sbjct: 488 QLITLMKTAGKYLENEELEKVLKKTEGLGTEATRAGIITMLKDRKYIDVKKNQ-VYATDK 546
Query: 535 GIVLVHGYQKIDRELVEPTMRSAY 558
G VL+ D+ L P M + +
Sbjct: 547 GKVLITAIG--DKILASPEMTAKW 568
>UNIPROTKB|P06612 [details] [associations]
symbol:topA species:83333 "Escherichia coli K-12"
[GO:0006265 "DNA topological change" evidence=IEA;IGI] [GO:0005694
"chromosome" evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0022616 "DNA strand
elongation" evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IMP] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA;IMP] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR005733 InterPro:IPR013263
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF08272 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 EMBL:M15041 GO:GO:0006265
GO:GO:0003918 PROSITE:PS50880 SMART:SM00493 GO:GO:0022616
GO:GO:0003917 EMBL:X04475 PIR:E64875 RefSeq:NP_415790.1
RefSeq:YP_489542.1 PDB:1CY0 PDB:1CY1 PDB:1CY2 PDB:1CY4 PDB:1CY6
PDB:1CY7 PDB:1CY8 PDB:1CY9 PDB:1CYY PDB:1ECL PDB:1MW8 PDB:1MW9
PDB:1YUA PDB:3PWT PDB:3PX7 PDBsum:1CY0 PDBsum:1CY1 PDBsum:1CY2
PDBsum:1CY4 PDBsum:1CY6 PDBsum:1CY7 PDBsum:1CY8 PDBsum:1CY9
PDBsum:1CYY PDBsum:1ECL PDBsum:1MW8 PDBsum:1MW9 PDBsum:1YUA
PDBsum:3PWT PDBsum:3PX7 ProteinModelPortal:P06612 SMR:P06612
DIP:DIP-11011N IntAct:P06612 MINT:MINT-1218330 PaxDb:P06612
PRIDE:P06612 EnsemblBacteria:EBESCT00000004769
EnsemblBacteria:EBESCT00000004770 EnsemblBacteria:EBESCT00000004771
EnsemblBacteria:EBESCT00000004772 EnsemblBacteria:EBESCT00000004773
EnsemblBacteria:EBESCT00000016049 GeneID:12930585 GeneID:945862
KEGG:ecj:Y75_p1248 KEGG:eco:b1274 PATRIC:32117806 EchoBASE:EB1006
EcoGene:EG11013 eggNOG:COG0551 HOGENOM:HOG000004018 KO:K03168
OMA:EFWDIHA ProtClustDB:PRK07561 BioCyc:EcoCyc:EG11013-MONOMER
BioCyc:ECOL316407:JW1266-MONOMER BioCyc:MetaCyc:EG11013-MONOMER
EvolutionaryTrace:P06612 Genevestigator:P06612 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 Uniprot:P06612
Length = 865
Score = 298 (110.0 bits), Expect = 4.3e-23, P = 4.3e-23
Identities = 120/476 (25%), Positives = 202/476 (42%)
Query: 89 EATP-KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRAR 147
E P K K+ + L A+ + + L D D+EGE I + + E + R
Sbjct: 84 EVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLREVIG-----GDDARYSRVV 138
Query: 148 FSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASL 207
F+ IT I+ A + NI + AR+ +D +G + K A
Sbjct: 139 FNEITKNAIRQAFNKPGELNIDRVNAQQARRFMDRVVGYMVSPLLWKKI--------ARG 190
Query: 208 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDL-TLNLNG--VAVSVTWSRGHIF---D 261
+S G Q+ + VER +I+ F PE +W +D T +G +A+ VT F +
Sbjct: 191 LSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEALALQVTHQNDKPFRPVN 250
Query: 262 KSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQA-LNTVELMRVASSGLGMGPHHAMQIA 320
K +EK ++ +V++ + + +KP A T L + AS+ LG G M +A
Sbjct: 251 KEQTQAAVSLLEKARY-SVLE-REDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMA 308
Query: 321 ERLYTQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVG 380
+RLY GY++Y RT++T + D V ++R S ++G N + ++
Sbjct: 309 QRLYEAGYITYMRTDSTNLSQ--DAVNMVRGYISD-NFGKKYLPESPNQYASKENSQEA- 364
Query: 381 DHPPITPTKLATRTQ----LDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFT 436
H I P+ + + ++ DA +LY I R F+ Y D
Sbjct: 365 -HEAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDFRLK 423
Query: 437 MEAKYLLHPGFTGVMTWSAMKNES--IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
+ L G+T VM +E +P GD + + + + T PP +E+ L+
Sbjct: 424 ARGRILRFDGWTKVMPALRKGDEDRILPAVNKGDALTLVELTPAQHFTKPPARFSEASLV 483
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELV 550
+EK GIG ++ I+ I R YV V + RR +G ++ ++ REL+
Sbjct: 484 KELEKRGIGRPSTYASIISTIQDRGYVRVEN-RRFYAEKMGEIVTDRLEENFRELM 538
>TIGR_CMR|SO_2705 [details] [associations]
symbol:SO_2705 "DNA topoisomerase I" species:211586
"Shewanella oneidensis MR-1" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013263 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF08272
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006265 GO:GO:0003918
SMART:SM00493 GO:GO:0003917 HOGENOM:HOG000004018 KO:K03168
OMA:EFWDIHA ProtClustDB:PRK07561 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 HSSP:P06612 RefSeq:NP_718289.1
ProteinModelPortal:Q8EDN8 SMR:Q8EDN8 GeneID:1170406
KEGG:son:SO_2705 PATRIC:23525033 Uniprot:Q8EDN8
Length = 878
Score = 298 (110.0 bits), Expect = 4.4e-23, P = 4.4e-23
Identities = 120/465 (25%), Positives = 195/465 (41%)
Query: 87 KREATP-KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWR 145
K + P K K+ L A + + L D D+EGE I + + E + P R
Sbjct: 90 KYQILPGKEKVVKELQALADSADQIYLATDLDREGEAIAWHLQEVIG-----GDPSRYQR 144
Query: 146 ARFSAITDKDIKAAMWNLVKPNIFEARSVDARQE---LDLRIGCAFTRYQTKFFQGKYGD 202
F+ IT I+ A KP + V+A+Q LD +G + K K
Sbjct: 145 VVFNEITKSAIQEAF---SKPASLDTNMVNAQQARRFLDRVVGFMVSPLLWK----KV-- 195
Query: 203 LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNL---NGVAVSVTWSRGHI 259
A +S G Q+ + VER +I+ F PE +W + LN + + V
Sbjct: 196 --ARGLSAGRVQSVAVRLVVERESEIKAFVPEEFWDVHAQLNTPSSEALRMEVVKYLDSA 253
Query: 260 FDKSTCNVFFKAVEKEKHVTVVDVQSSTKS-KTKPQA-LNTVELMRVASSGLGMGPHHAM 317
F+ + AV+ + + K+ ++KP A T L + AS+ LG G M
Sbjct: 254 FEPTNEQQALAAVQALSSASFKVIAREDKATQSKPSAPFITSTLQQAASTRLGFGVKKTM 313
Query: 318 QIAERLYTQGYVSYPRTETTQYP-ENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKG 376
+A+RLY G+++Y RT++T E D V + +E + E + G + +
Sbjct: 314 MMAQRLYEAGHITYMRTDSTNLSQEALDSVREMIGKEYGAKYLP--AEPIRYGSKEGAQE 371
Query: 377 KDVGDHPPITPTKLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFT 436
P + A T ++ DA RLY+ I R F+ +Y AD
Sbjct: 372 AHEAIRPSNVKVEAAALTDMERDAQRLYELIWRQFVSCQMTPALYDATKLTVKAADYELK 431
Query: 437 MEAKYLLHPGFTGVMTWSAMKNE---SIPDFKPGDLIPIQSVKMVERKTTPPDYLTESEL 493
+ L G+T V T KNE ++P GD++ + ++ + T PP +E+ L
Sbjct: 432 ATGRILRFDGWTRVQTAIKKKNEEDNTLPAVNEGDVLSLVELEPKQHFTKPPARYSEASL 491
Query: 494 ISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
+ +EK GIG ++ I+ I +R YV V + RR +G ++
Sbjct: 492 VKELEKRGIGRPSTYATIISTIQERGYVKVEN-RRFYAEKMGEIV 535
>UNIPROTKB|Q9KRB2 [details] [associations]
symbol:topA "DNA topoisomerase 1" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003917 "DNA
topoisomerase type I activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR005733
InterPro:IPR013263 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 Pfam:PF08272 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0046872
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006265 GO:GO:0003918
PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 eggNOG:COG0551
KO:K03168 OMA:EFWDIHA ProtClustDB:PRK07561 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 PIR:B82163 RefSeq:NP_231366.1
ProteinModelPortal:Q9KRB2 SMR:Q9KRB2 DNASU:2613735 GeneID:2613735
KEGG:vch:VC1730 PATRIC:20082518 Uniprot:Q9KRB2
Length = 876
Score = 284 (105.0 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 120/458 (26%), Positives = 192/458 (41%)
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT 152
K K+ A L AKD + + L D D+EGE I + + E + K R F+ IT
Sbjct: 97 KEKVVAELQKLAKDADSVYLATDLDREGEAIAWHLREIIG-----GDEKRYKRVVFNEIT 151
Query: 153 DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGP 212
I+ A + N+ + AR+ +D +G + K K A +S G
Sbjct: 152 KNAIQQAFKQPGELNMDGVNAQQARRFMDRVVGFMVSPLLWK----KV----ARGLSAGR 203
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLD---LTLNLNGVAVSVTWSRGHIF---DKSTCN 266
Q+ + VER +I+ F PE +W ++ LT + + V G F +++
Sbjct: 204 VQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQDFRLLVAQKDGLAFKPVNETEAL 263
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
A+ K ++ T SK + T L + AS+ LG G M +A+RLY
Sbjct: 264 AAVAALNKAQYEVCKREDKPTTSKPSAPFI-TSTLQQAASTRLGYGVKKTMMLAQRLYEA 322
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY++Y RT++T + + V LR + +G+ N + ++ H I
Sbjct: 323 GYITYMRTDSTNL--SAEAVENLRGYITK-HYGEAYLPSQPNVYGSKQNAQEA--HEAIR 377
Query: 387 PTKLA-TRTQLDG---DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYL 442
P+ + T L+G DA +LY I F+ Y A+ + + L
Sbjct: 378 PSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDSTTVSVKAAEYTLKAKGRIL 437
Query: 443 LHPGFTGVMTWSAMKNES--IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKH 500
G+T V KNE +P K GD + + S+ + T PP TE+ L+ +EK
Sbjct: 438 KFDGWTRVQR-PLGKNEDQILPPVKVGDSLKLVSLDPKQHFTKPPARYTEAALVKELEKR 496
Query: 501 GIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
GIG ++ I+ I R YV V RR +G ++
Sbjct: 497 GIGRPSTYASIISTIQDRGYVKVDQ-RRFFAEKMGEIV 533
>TIGR_CMR|VC_1730 [details] [associations]
symbol:VC_1730 "DNA topoisomerase I" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003917 "DNA topoisomerase type I
activity" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR005733 InterPro:IPR013263
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF08272 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006265 GO:GO:0003918 PROSITE:PS50880 SMART:SM00493
GO:GO:0003917 eggNOG:COG0551 KO:K03168 OMA:EFWDIHA
ProtClustDB:PRK07561 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
TIGRFAMs:TIGR01051 PIR:B82163 RefSeq:NP_231366.1
ProteinModelPortal:Q9KRB2 SMR:Q9KRB2 DNASU:2613735 GeneID:2613735
KEGG:vch:VC1730 PATRIC:20082518 Uniprot:Q9KRB2
Length = 876
Score = 284 (105.0 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 120/458 (26%), Positives = 192/458 (41%)
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT 152
K K+ A L AKD + + L D D+EGE I + + E + K R F+ IT
Sbjct: 97 KEKVVAELQKLAKDADSVYLATDLDREGEAIAWHLREIIG-----GDEKRYKRVVFNEIT 151
Query: 153 DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGP 212
I+ A + N+ + AR+ +D +G + K K A +S G
Sbjct: 152 KNAIQQAFKQPGELNMDGVNAQQARRFMDRVVGFMVSPLLWK----KV----ARGLSAGR 203
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLD---LTLNLNGVAVSVTWSRGHIF---DKSTCN 266
Q+ + VER +I+ F PE +W ++ LT + + V G F +++
Sbjct: 204 VQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQDFRLLVAQKDGLAFKPVNETEAL 263
Query: 267 VFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ 326
A+ K ++ T SK + T L + AS+ LG G M +A+RLY
Sbjct: 264 AAVAALNKAQYEVCKREDKPTTSKPSAPFI-TSTLQQAASTRLGYGVKKTMMLAQRLYEA 322
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
GY++Y RT++T + + V LR + +G+ N + ++ H I
Sbjct: 323 GYITYMRTDSTNL--SAEAVENLRGYITK-HYGEAYLPSQPNVYGSKQNAQEA--HEAIR 377
Query: 387 PTKLA-TRTQLDG---DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYL 442
P+ + T L+G DA +LY I F+ Y A+ + + L
Sbjct: 378 PSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDSTTVSVKAAEYTLKAKGRIL 437
Query: 443 LHPGFTGVMTWSAMKNES--IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKH 500
G+T V KNE +P K GD + + S+ + T PP TE+ L+ +EK
Sbjct: 438 KFDGWTRVQR-PLGKNEDQILPPVKVGDSLKLVSLDPKQHFTKPPARYTEAALVKELEKR 496
Query: 501 GIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
GIG ++ I+ I R YV V RR +G ++
Sbjct: 497 GIGRPSTYASIISTIQDRGYVKVDQ-RRFFAEKMGEIV 533
>UNIPROTKB|K7EMT6 [details] [associations]
symbol:TOP3A "DNA topoisomerase 3-alpha" species:9606 "Homo
sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR000380
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013825
Pfam:PF01131 EMBL:AC127537 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
HGNC:HGNC:11992 Ensembl:ENST00000581536 Uniprot:K7EMT6
Length = 163
Score = 247 (92.0 bits), Expect = 3.4e-20, P = 3.4e-20
Identities = 52/119 (43%), Positives = 73/119 (61%)
Query: 209 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGHIFDKSTCNVF 268
SYG CQ PTLGF VER I+ F PE + + +T + V W R +F+ + C V
Sbjct: 2 SYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRHRLFNHTACLVL 61
Query: 269 FKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQG 327
++ ++ TVV+V+S KSK +PQAL+TVEL ++AS L + M+IAE+LYTQG
Sbjct: 62 YQLCVEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQG 120
>TIGR_CMR|CPS_1197 [details] [associations]
symbol:CPS_1197 "DNA topoisomerase I" species:167879
"Colwellia psychrerythraea 34H" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013263 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF08272
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006265 GO:GO:0003918
SMART:SM00493 GO:GO:0003917 eggNOG:COG0551 HOGENOM:HOG000004018
KO:K03168 OMA:EFWDIHA ProtClustDB:PRK07561 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 RefSeq:YP_267940.1
ProteinModelPortal:Q486S5 SMR:Q486S5 STRING:Q486S5 GeneID:3521498
KEGG:cps:CPS_1197 PATRIC:21465639
BioCyc:CPSY167879:GI48-1278-MONOMER Uniprot:Q486S5
Length = 899
Score = 266 (98.7 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 114/460 (24%), Positives = 205/460 (44%)
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT 152
K K+ A L A + + L D D+EGE I + + E + + + R F+ IT
Sbjct: 96 KEKVVAELKKLADKADIVYLATDLDREGEAIAWHLKEIIGGE-----DEKFRRVVFNEIT 150
Query: 153 DKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGP 212
+ I+ A + ++ + AR+ LD +G + K K A +S G
Sbjct: 151 ESSIQQAFATPGELSMPGVNAQQARRFLDRVVGFMVSPLLWK----KV----ARGLSAGR 202
Query: 213 CQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN-G--VAVSVTWSRGHIFDKSTCNVFF 269
Q+ + VE+ +I+ F P+ +W + + + + G + + VT G F +T
Sbjct: 203 VQSVAVKLVVEKEREIKAFDPKEFWEIAVDTHASTGEVLTLDVTHENGKAFKPTTEKETN 262
Query: 270 KAVEKEKHVT-VVDVQSSTKSKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQG 327
A+ K V + SK+ P A T L + AS+ LG G M +A+RLY G
Sbjct: 263 AALAILKPADYAVSKREDRPSKSTPSAPFITSTLQQAASTKLGYGVKRTMGLAQRLYEAG 322
Query: 328 YVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITP 387
+++Y RT++T + D V + R+ S +GD+ + N + K H I P
Sbjct: 323 HITYMRTDSTNLSK--DAVEMCRKYISD-SFGDNY--LPENAKTYGSKAGAQEAHEAIRP 377
Query: 388 TKLATRTQ-LDG---DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK--Y 441
+ + L+G DA +LY+ I R F+ YT V+ +++ F ++AK
Sbjct: 378 SNVKLEAAFLEGIEADAKKLYELIWRQFVACQMTAARYT--VSTLTISAASFDLKAKGRV 435
Query: 442 LLHPGFTGVMTWSAMKNES-IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKH 500
+ G+T V + +++ +PD + G+ + + ++ + T PP E+ L+ +EK
Sbjct: 436 MQFDGWTIVHPQLSKGDDTHLPDLQVGEALTLDKIEPSQHFTKPPARFGEASLVKELEKR 495
Query: 501 GIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVH 540
IG ++ I+ I R YV + +R +G ++ +
Sbjct: 496 SIGRPSTYASIISTIQDRGYVRLDK-KRFYAEKMGEIVTN 534
>TIGR_CMR|APH_0597 [details] [associations]
symbol:APH_0597 "DNA topoisomerase I" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0006265 "DNA topological
change" evidence=ISS] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR005733 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0006265 SMART:SM00493 GO:GO:0003917
KO:K03168 Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 TIGRFAMs:TIGR01051 eggNOG:COG1754
HOGENOM:HOG000004020 ProtClustDB:PRK06599 OMA:KLTHVND
RefSeq:YP_505187.1 ProteinModelPortal:Q2GKB4 STRING:Q2GKB4
GeneID:3930246 KEGG:aph:APH_0597 PATRIC:20949858
BioCyc:APHA212042:GHPM-621-MONOMER Uniprot:Q2GKB4
Length = 811
Score = 244 (91.0 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 125/527 (23%), Positives = 214/527 (40%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
F + + GHI DF +K + VDP F E + K L + + + E +
Sbjct: 23 FNVIASFGHIR--DFPAKSGS---VDPSNDFKMIYEIIPKSEK-HLDKIVKTVSAEKEAI 76
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
L D D+EGE I + ++E ++ + I TV R F+ +T + + AA+ N N+
Sbjct: 77 YLATDPDREGEAIAWHIVEVLKEKCAIAKDVTVNRMVFNEVTKRAVTAAVDNCRPINMDL 136
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
R+ R+ LD +G + + G S G Q+ L ER ++
Sbjct: 137 VRAQQTRRVLDYLVGFTLSPLLWRKLPGSR--------SAGRVQSVALRLLCEREYEVEQ 188
Query: 231 FKPEPYWLLDLTLNLNG----VAVSVTWSRGHIFDKSTCNVFFKAVE-----KEKHVTVV 281
FK + YW + + L G AV ++ G +K + +A E K + TV
Sbjct: 189 FKTQEYWDVGVDLQNQGGEKFEAVLKCYA-GEKLEKFSIGTEEQAKEYAETVKNQSYTVE 247
Query: 282 DVQSSTKSKTKPQA-LNTVELMRVASSGLGMGPHHAMQIAERLYTQ--------GYVSYP 332
V+S K+K P T L + AS+ LG + M IA++LY G ++Y
Sbjct: 248 SVESK-KTKRNPYPPFITSSLQQEASTKLGFSAKNTMMIAQKLYEGIDIGGEIVGLITYM 306
Query: 333 RTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLAT 392
RT+ E D V +R ++ + + N K + ++ H I PT +
Sbjct: 307 RTDGFYISE--DAVNYIRDTIKMQFGEKYLSKSVRNYTKKVKNAQEA--HEAIRPTDITM 362
Query: 393 RTQ-----LDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA--KYLLHP 445
+ L + +LY I + + T V Q + ++ A L
Sbjct: 363 LPEQLSKYLTDEQLKLYTLIWKRTLATQMESAVIDQVAVDIKSSCGKISLHATGSTLSFD 422
Query: 446 GFTGVM-TWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGT 504
G+ V + + K +P + G+ + V + T PP +E+ L+ ME+ GIG
Sbjct: 423 GYYRVYGSEDSDKRRMLPQLREGESCELLEVHPNQHFTQPPARYSEASLVKKMEEIGIGR 482
Query: 505 DASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVE 551
++ I+ + +R Y T +R +P+ G ++ R+ VE
Sbjct: 483 PSTYATIISVLQERGY-TQLEQKRFIPSERGRIVNAFLTNFFRKYVE 528
>TIGR_CMR|SPO_3079 [details] [associations]
symbol:SPO_3079 "DNA topoisomerase I" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0003917 "DNA topoisomerase type I activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR005733
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006265 SMART:SM00493
GO:GO:0003917 KO:K03168 ProtClustDB:PRK07561 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 HOGENOM:HOG000004020 OMA:GKYGPYL
RefSeq:YP_168282.1 ProteinModelPortal:Q5LNX4 GeneID:3196046
KEGG:sil:SPO3079 PATRIC:23379603 Uniprot:Q5LNX4
Length = 880
Score = 210 (79.0 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
Identities = 118/415 (28%), Positives = 178/415 (42%)
Query: 58 GHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCD 117
GH+ D +K + VDP F E A + + A A+D E L+L D D
Sbjct: 30 GHVR--DLPAKDGS---VDPEHDFDMTWEVA-ADSRKHVKAIADALAEDNE-LILATDPD 82
Query: 118 KEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDAR 177
+EGE I + + EA+ + +I V R F+AIT + AM N + ++ + AR
Sbjct: 83 REGEAISWHLQEALTKRRSIKKGTAVSRVTFNAITKDAVTKAMQNPRQVDMPLVEAYLAR 142
Query: 178 QELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYW 237
+ LD +G + + G S G Q+ L VER +I FKP YW
Sbjct: 143 RALDYLVGFNLSPVLWRKLPGAR--------SAGRVQSVCLRLIVEREMEIEAFKPVEYW 194
Query: 238 LLDLTLNL-NGVAVS---VTWSRGHIFDKSTCNVFFKAVEKEKHVTVVDVQS-STKS-KT 291
+ L G VT + G+ DK + A + E V + ++ S +S +
Sbjct: 195 SVKALLETPRGQVYEARLVTLA-GNKLDKMDIS---NATQAELAVQAITSRALSIQSVEA 250
Query: 292 KPQALN------TVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQY-PENFD 344
KP A N T L + AS GMG H M A+RLY G+++Y RT+ PE
Sbjct: 251 KPAARNPSAPFMTSTLQQEASRKFGMGARHCMSAAQRLYEAGHITYMRTDGIDMAPE--- 307
Query: 345 LVAVLRQQESSPD-WG-DHVREVLSNGISKPRKGKDVGD-HPPITPTKL---ATRTQL-D 397
AV+ +++ D +G ++V + S + K K K+ + H I PT + A +L D
Sbjct: 308 --AVMATRDAIADRFGAEYVPD--SPRMYK-NKAKNAQEAHECIRPTDMRKDAAALKLKD 362
Query: 398 GDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA--KYLLHPGFTGV 450
D RLYD I + I + + AD + A + +L GF V
Sbjct: 363 EDQRRLYDLIWKRTIACQMAAARLERTTVEIGSADGQVGLRATGQVVLFDGFLRV 417
Score = 83 (34.3 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 473 QSVKMVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPT 532
++V ++ T PP TE+ L+ ME+ GIG ++ I I R YV R L+P
Sbjct: 478 EAVLALQHHTQPPPRYTEATLVKRMEELGIGRPSTYASVITTIQDREYVRKDKNR-LIPE 536
Query: 533 SLGIVL 538
G ++
Sbjct: 537 EKGRIV 542
>TIGR_CMR|NSE_0594 [details] [associations]
symbol:NSE_0594 "DNA topoisomerase I" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0006268 "DNA
unwinding involved in replication" evidence=ISS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR005733
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0006265 SMART:SM00493
GO:GO:0003917 KO:K03168 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
TIGRFAMs:TIGR01051 eggNOG:COG1754 HOGENOM:HOG000004020
RefSeq:YP_506474.1 ProteinModelPortal:Q2GDH2 STRING:Q2GDH2
GeneID:3931799 KEGG:nse:NSE_0594 PATRIC:22681227 OMA:SQFARRI
ProtClustDB:PRK06599 BioCyc:NSEN222891:GHFU-610-MONOMER
Uniprot:Q2GDH2
Length = 827
Score = 150 (57.9 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 77/286 (26%), Positives = 120/286 (41%)
Query: 70 NNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVME 129
N VD E F K T + +P L + K L L D D+EGE I + ++E
Sbjct: 37 NKKGSVDVTESFEM-LYKLTDTGETVVPQ-LIKDVKKATALYLATDPDREGEAISWHLVE 94
Query: 130 AVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFT 189
+ N PK V R F IT ++ A+ + K + R+ RQ LD +G + +
Sbjct: 95 VFKE--NDVLPKDVHRVVFHEITKTAVQNAIASPRKIDENLVRAQRLRQALDYLVGFSIS 152
Query: 190 RYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNL-NGV 248
K G S G Q+ L +R ++I F PE YW + T+N+ +G
Sbjct: 153 PVLWKKLPGSK--------SAGRVQSVALRILCDRENEIGLFTPEEYWTV--TVNMTDGE 202
Query: 249 AVSVTWSRGHIFDKSTCNVFFK-AVEKEKHVTVVD-----VQSSTKS--KTKPQA-LNTV 299
A+ + H+ + + + A E EK V + V+ K K KP T
Sbjct: 203 ALVLPTQLSHMNGEKLERMSIRRAEEAEKIVEEISGLPFLVEEIKKKELKQKPSPPFITS 262
Query: 300 ELMRVASSGLGMGPHHAMQIAERLYT--------QGYVSYPRTETT 337
+ + AS+ LG M +A++LY +G ++Y RT+ T
Sbjct: 263 TMQQTASTILGFSVKKTMSLAQKLYEGIEIGGVIEGLITYMRTDAT 308
Score = 138 (53.6 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 53/238 (22%), Positives = 109/238 (45%)
Query: 326 QGYVSYPRTETTQYP-ENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HP 383
+G ++Y RT+ T E+ D + Q++ ++ + ++ + +K K+ + H
Sbjct: 297 EGLITYMRTDATHLSVESVDAIREFIQEKFGQEY------LPASPVLFKKKVKNAQEAHE 350
Query: 384 PITPTKL-ATRTQLDG----DAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMF--T 436
I PT + T +++ D ++LY I + D + + + F D+ F +
Sbjct: 351 AIRPTSIFRTPEEIESYLTPDQYKLYRLIWERALACQMSDAITSSQNIVFVSQDKKFKTS 410
Query: 437 MEAKYLLHPGFTGVMTW--SAMKNESIPDF----KPGDLIPIQSVKMVERKTTPPDYLTE 490
A L+ GF + + KN+ + DF K G + + V + + T PP +E
Sbjct: 411 ASASLLIFDGFNAAFSHGKNKNKNQDVIDFIKKHKEGAQVKVGDVLLTQNFTEPPHRYSE 470
Query: 491 SELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLG-IV---LVHGYQK 544
+ L+ +E+ GIG ++ ++ + +R Y ++ + + +P S G +V LVH + K
Sbjct: 471 AGLVKHLEELGIGRPSTYATVVSVLQERGYASIVN-KSFIPESRGRLVSEFLVHFFSK 527
Score = 39 (18.8 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 443 LHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGI 502
LH G G+ KN SIP K D + I + + + P L + + K G+
Sbjct: 653 LHKGPYGIYLKCKGKNSSIP--KDVDPVSIDE-EFAHKIASLPKILGKHPIDGKEIKMGL 709
Query: 503 G 503
G
Sbjct: 710 G 710
>TIGR_CMR|ECH_0750 [details] [associations]
symbol:ECH_0750 "DNA topoisomerase I" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0006268 "DNA
unwinding involved in replication" evidence=ISS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR005733
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006265 SMART:SM00493
GO:GO:0003917 KO:K03168 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
TIGRFAMs:TIGR01051 eggNOG:COG1754 HOGENOM:HOG000004020
ProtClustDB:PRK06599 RefSeq:YP_507548.1 ProteinModelPortal:Q2GG85
STRING:Q2GG85 GeneID:3927721 KEGG:ech:ECH_0750 PATRIC:20576936
OMA:KLTHVND BioCyc:ECHA205920:GJNR-753-MONOMER Uniprot:Q2GG85
Length = 820
Score = 223 (83.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 121/517 (23%), Positives = 211/517 (40%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKL--KLPAFLANEAKDCE 108
+K+ + GHI DF +K + VDP + F+ E + K KL +AN K+ +
Sbjct: 23 YKVVASFGHIR--DFPAKSGS---VDPDKDFAMTYEIISKSEKYVNKLIQ-VAN--KETQ 74
Query: 109 FLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNI 168
+ L D D+EGE I + ++E ++ I+ + R F+ +T I ++ N+
Sbjct: 75 GIYLATDPDREGEAIAWHIIEVLKENNAIDDNVVINRMVFNEVTKSAILESIKRPRSINM 134
Query: 169 FEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKI 228
+ AR+ LD +G + + G S G Q+ L +R I
Sbjct: 135 DLVYAQQARRALDYLVGFTLSPLLWRKLPGSK--------SAGRVQSVALRLICDRESDI 186
Query: 229 RTFKPEPYWLLDLTL-NLNGVAVSVTWS-----RGHIFDKSTCNVFFKAVE--KEKHVTV 280
F + YW ++ N G S S + FD K E + + +V
Sbjct: 187 EKFITQEYWDIEAKCCNTEGKQFSAFLSCYAGKKLEKFDIKNEEDAQKLSEEVRSRSYSV 246
Query: 281 VDVQSS-TKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ--------GYVSY 331
++V+ TK P + T L + AS+ LG + M IA++LY G ++Y
Sbjct: 247 INVEKKHTKRNPYPPFI-TSSLQQEASTKLGFTAKNTMLIAQKLYEGIDVGGEIVGLITY 305
Query: 332 PRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKL- 390
RT+ + + + +R S +++ E + K + ++ H I PT +
Sbjct: 306 MRTDGFYIAD--EALEHIRSIIVSMFGKEYLPESARKYVKKVKNAQEA--HEAIRPTNIT 361
Query: 391 ----ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA--KYLLH 444
+ L + +LYD I + + + V Q + + D++ T+ A L
Sbjct: 362 ITPGSLSNYLTPEQLKLYDLIWKRTVASQMNSAVIDQVIVELGSLDKVVTLRATGSSLFF 421
Query: 445 PGFTGVMTWSA---MKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHG 501
GF V KN +P + D P+ V + T PP E+ L+ ME+ G
Sbjct: 422 DGFYKVYGHGEDDDSKNNMLPLLQKNDKCPLDEVVPHQHFTNPPARYNEASLVKKMEEIG 481
Query: 502 IGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
IG ++ I+ + R YV + + +R PT G ++
Sbjct: 482 IGRPSTYASIISVLQDRQYV-ILNQKRFFPTERGRIV 517
>UNIPROTKB|P14294 [details] [associations]
symbol:topB species:83333 "Escherichia coli K-12"
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA;IDA]
[GO:0006310 "DNA recombination" evidence=IMP] [GO:0051304
"chromosome separation" evidence=IMP] [GO:0006265 "DNA topological
change" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR005738 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006310 GO:GO:0006265 GO:GO:0051304
PROSITE:PS50880 SMART:SM00493 EMBL:J05076 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 OMA:GNKERDE
KO:K03169 ProtClustDB:PRK07726 TIGRFAMs:TIGR01056 PIR:JV0049
RefSeq:NP_416277.1 RefSeq:YP_490024.1 PDB:1D6M PDB:1I7D PDB:2O19
PDB:2O54 PDB:2O59 PDB:2O5C PDB:2O5E PDBsum:1D6M PDBsum:1I7D
PDBsum:2O19 PDBsum:2O54 PDBsum:2O59 PDBsum:2O5C PDBsum:2O5E
ProteinModelPortal:P14294 SMR:P14294 DIP:DIP-11012N IntAct:P14294
MINT:MINT-1224249 PRIDE:P14294 EnsemblBacteria:EBESCT00000000765
EnsemblBacteria:EBESCT00000016482 GeneID:12930143 GeneID:946141
KEGG:ecj:Y75_p1738 KEGG:eco:b1763 PATRIC:32118837 EchoBASE:EB1007
EcoGene:EG11014 HOGENOM:HOG000086848 BioCyc:EcoCyc:EG11014-MONOMER
BioCyc:ECOL316407:JW1752-MONOMER BioCyc:MetaCyc:EG11014-MONOMER
EvolutionaryTrace:P14294 Genevestigator:P14294 Uniprot:P14294
Length = 653
Score = 215 (80.7 bits), Expect = 3.6e-14, P = 3.6e-14
Identities = 100/458 (21%), Positives = 192/458 (41%)
Query: 65 FTSKYNNWDKVD-PLELFSCPTEKREA-TPKLKLPAFLANEAKDCEFLVLWLDCDKEGEN 122
+ S+Y W+ D P+ + R + T +L + +EA + +V D D+EG+
Sbjct: 54 YDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHEASE---IVHAGDPDREGQL 110
Query: 123 ICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDA--RQEL 180
+ EV++ + Q+ + V R + + + ++ A+ L + F V A R
Sbjct: 111 LVDEVLDYL--QLAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCVSALARARA 168
Query: 181 DLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 240
D G TR T G+ ++S G QTP LG V R ++I F + ++ +
Sbjct: 169 DWLYGINMTRAYT--ILGRNAGYQG-VLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVK 225
Query: 241 LTLNLNG-VAVSVTWS-----------RGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTK 288
+ + W G + + + + + V +
Sbjct: 226 AHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAI-VTSYNDKRE 284
Query: 289 SKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY-TQGYVSYPRTETTQYPE-NF-DL 345
S++ P + L A+ G+ + + I ++LY T ++YPR++ PE +F
Sbjct: 285 SESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLYETHKLITYPRSDCRYLPEEHFAGR 344
Query: 346 VAVLRQ-QESSPDWGDHVREVLSNGI-SKPRKGKDVGDHPPITPTKLATRTQLDGDAWRL 403
AV+ +PD + V+ I ++ K V H I PT ++ L + ++
Sbjct: 345 HAVMNAISVHAPDLLP--QPVVDPDIRNRCWDDKKVDAHHAIIPTARSSAINLTENEAKV 402
Query: 404 YDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVMTWSAMKNES--- 460
Y+ I R ++ C D V+ + V + +A F +A++L G+ ++ E+
Sbjct: 403 YNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLLGSKERDEENDGT 462
Query: 461 -IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLM 497
+P GD + + ++VER+T PP + T++ L+S M
Sbjct: 463 PLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAM 500
>UNIPROTKB|B4DSJ0 [details] [associations]
symbol:TOP3A "cDNA FLJ56242, highly similar to DNA
topoisomerase 3-alpha (EC 5.99.1.2)" species:9606 "Homo sapiens"
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA topological
change" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR010666
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
Pfam:PF01131 Pfam:PF01396 Pfam:PF06839 SMART:SM00343 GO:GO:0005694
GO:GO:0008270 GO:GO:0006265 EMBL:AC127537 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 UniGene:Hs.592115 HGNC:HGNC:11992 EMBL:AK299764
IPI:IPI01012294 SMR:B4DSJ0 STRING:B4DSJ0 Ensembl:ENST00000540524
HOVERGEN:HBG103257 Uniprot:B4DSJ0
Length = 531
Score = 212 (79.7 bits), Expect = 5.0e-14, P = 5.0e-14
Identities = 44/115 (38%), Positives = 70/115 (60%)
Query: 442 LLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHG 501
+L + V + ++ +P ++ G +V+MV+ +T+PP LTE++LI+LMEKHG
Sbjct: 2 ILARNYLDVYPYDHWSDKILPVYEQGSHFQPSTVEMVDGETSPPKLLTEADLIALMEKHG 61
Query: 502 IGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVHGYQKIDRELVEPTMRS 556
IGTDA+ HI I R YV +T +R +P LG+ LV GY + E+ +P +R+
Sbjct: 62 IGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMGLVEGYDSMGYEMSKPDLRA 116
>TIGR_CMR|CBU_2000 [details] [associations]
symbol:CBU_2000 "DNA topoisomerase I" species:227377
"Coxiella burnetii RSA 493" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0003917 "DNA topoisomerase type I activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR005733
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006265 SMART:SM00493
GO:GO:0003917 HOGENOM:HOG000004018 KO:K03168 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 ProtClustDB:PRK06599 OMA:RYTMASI
HSSP:P06612 RefSeq:NP_820975.1 ProteinModelPortal:Q83AA5
PRIDE:Q83AA5 GeneID:1209913 KEGG:cbu:CBU_2000 PATRIC:17932741
BioCyc:CBUR227377:GJ7S-1973-MONOMER Uniprot:Q83AA5
Length = 765
Score = 133 (51.9 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 63/280 (22%), Positives = 111/280 (39%)
Query: 283 VQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPEN 342
+Q K A T+++ + G+ +G AM G ++Y RT++
Sbjct: 269 MQQEAARKLGFSASKTMQIAQQLYEGVNLGEEGAM---------GLITYMRTDSVTLAS- 318
Query: 343 FDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPITPTKLATRTQ------L 396
+ + +RQ ++V E +K + ++ H I PT A RT L
Sbjct: 319 -EALQEIRQLIEEKYGQENVPEQTRIYKTKSKNAQEA--HEAIRPTS-AFRTPENLKKYL 374
Query: 397 DGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKYLLHPGFTGVM--TWS 454
+ D +LY I + I + + +F ++ PGF V T+
Sbjct: 375 NSDQLKLYTLIWKRTIACQMIEATLHTVAVDLKAPNAIFRANGSTIVKPGFISVYQETFD 434
Query: 455 AMKNES------IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLMEKHGIGTDASI 508
K E +P + G + + +K + T PP TE+ L+ +E++ IG ++
Sbjct: 435 DKKKEEESDSKMLPPLEEGQTVDVNEIKSEQHFTEPPPRYTEASLVKALEEYDIGRPSTY 494
Query: 509 PVHINNICQRNYVTVTSGRRLVPTSLG-IV---LVHGYQK 544
I + R YV V + +R + T +G IV L H + K
Sbjct: 495 ASIIATLKNRKYVDVDN-KRFIATDVGRIVNRFLTHYFTK 533
Score = 126 (49.4 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 72/288 (25%), Positives = 115/288 (39%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
FK+ + GH+ D K VDP + F + E + + A +A K C L
Sbjct: 25 FKVMASYGHVR--DLIPKEG---AVDPEDHFKMHYQAIERNIR-HMDA-IAKALKPCHNL 77
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
L D D+EGE I + V + + + + K R F IT K ++ A+ N ++
Sbjct: 78 YLATDPDREGEAIAWHVKQMLESRNGLKDKKFS-RVVFHQITKKAVQHAIENPRDISMDL 136
Query: 171 ARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRT 230
+ AR+ LD +G F + + + G +S G Q+P L VER +I
Sbjct: 137 VNAQQARRALDYLVG--FNLSPLLWKKIRPG------LSAGRVQSPALRLIVEREIEIEN 188
Query: 231 FKPEPYWLLDLTLNLNGVAVSVTWSRGHI-FDKSTCNVFFKAVEKEKH------------ 277
F+ + YW T++ + A + I F F EK+ H
Sbjct: 189 FESQEYW----TIHADCHAQQQPFDARLIEFQGEKLEQFSIVNEKQAHETRDAITQAANG 244
Query: 278 -VTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY 324
+TV V + + T + + A+ LG MQIA++LY
Sbjct: 245 KLTVAKVVKRERKRNPAPPFITSTMQQEAARKLGFSASKTMQIAQQLY 292
>TIGR_CMR|CHY_1794 [details] [associations]
symbol:CHY_1794 "DNA topoisomerase I" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003917 "DNA topoisomerase type I
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 eggNOG:COG0551
HOGENOM:HOG000004018 KO:K03168 OMA:EFWDIHA Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 RefSeq:YP_360614.1
ProteinModelPortal:Q3AB70 STRING:Q3AB70 GeneID:3726845
KEGG:chy:CHY_1794 PATRIC:21276699
BioCyc:CHYD246194:GJCN-1793-MONOMER Uniprot:Q3AB70
Length = 694
Score = 201 (75.8 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 72/284 (25%), Positives = 115/284 (40%)
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY---------T 325
++ VV + K+ P+ T L + AS L MQIA+ LY
Sbjct: 232 QRDFKVVKITKKLTKKSAPEPFITSTLQQEASKRLNFSAKKTMQIAQALYEGLEIGEYGV 291
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPI 385
G V+Y RT++T+ E A + + +G+ V + +K KGK H I
Sbjct: 292 TGLVTYIRTDSTRVAEEAKAKAAAYIKNT---FGEEY--VGTEKKTKAPKGKIQDAHEAI 346
Query: 386 TPTKLAT-----RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
PT + + L D ++LY I F+ + D Y D +F
Sbjct: 347 RPTDIEKDPEKIKQYLTPDQYKLYKLIWERFVASQMSDAQYDVTTVDIEAGDYLFRATGS 406
Query: 441 YLLHPGFTGVMT-----WSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELIS 495
L PGFT + + E +P G + + ++ + T PP TE+ LI
Sbjct: 407 ILRFPGFTKIYQVEEEEGEKEEKEKLPALMEGQSLTLLKLEPKQHFTEPPPRYTEATLIK 466
Query: 496 LMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
+E+ GIG ++ + I +R YV ++L PT LG ++V
Sbjct: 467 ALEEKGIGRPSTYAPILETILKRGYVEKDK-KQLKPTELGRIVV 509
Score = 188 (71.2 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 105/420 (25%), Positives = 159/420 (37%)
Query: 93 KLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAIT 152
K +L L EA E + + D D+EGE I + V E + + N + R F+ IT
Sbjct: 59 KKELIKELKEEAAKAEKVYIASDPDREGEAIAWHVKEVLDLEDNGDL-----RIEFNEIT 113
Query: 153 DKDIKAAMWNLVKPNIFEARSV---DARQELDLRIGCAFTRYQTKFFQGKYGDLDASLIS 209
KD A + + P + V AR+ LD +G + + K G +S
Sbjct: 114 -KD--AVLQAIANPRGIDYNRVYAQQARRILDRIVGYKLSPLLWRKI--KKG------LS 162
Query: 210 YGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGVAVSVTWSRGH-----IFDKST 264
G Q+ + ER ++I F PE YW L L S+ I +K
Sbjct: 163 AGRVQSVAVRLICEREEEIEKFVPEEYWSLTAHLEAEKKPFKAKLSKYQNRKIEIKNKDE 222
Query: 265 CNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY 324
V ++ VV + K+ P+ T L + AS L MQIA+ LY
Sbjct: 223 VERIIAEVS-QRDFKVVKITKKLTKKSAPEPFITSTLQQEASKRLNFSAKKTMQIAQALY 281
Query: 325 ---------TQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRK 375
G V+Y RT++T+ E A + + +G+ V + +K K
Sbjct: 282 EGLEIGEYGVTGLVTYIRTDSTRVAEEAKAKAAAYIKNT---FGEEY--VGTEKKTKAPK 336
Query: 376 GKDVGDHPPITPTKLAT-----RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSV 430
GK H I PT + + L D ++LY I F+ + D Y
Sbjct: 337 GKIQDAHEAIRPTDIEKDPEKIKQYLTPDQYKLYKLIWERFVASQMSDAQYDVTTVDIEA 396
Query: 431 ADEMFTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTE 490
D +F L PGFT + + E K L+ QS+ ++ K P + TE
Sbjct: 397 GDYLFRATGSILRFPGFTKIYQVEEEEGEKEEKEKLPALMEGQSLTLL--KLEPKQHFTE 454
>TIGR_CMR|CPS_4792 [details] [associations]
symbol:CPS_4792 "DNA topoisomerase III" species:167879
"Colwellia psychrerythraea 34H" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005738 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 OMA:GNKERDE
KO:K03169 ProtClustDB:PRK07726 TIGRFAMs:TIGR01056
HOGENOM:HOG000086848 RefSeq:YP_271431.1 ProteinModelPortal:Q47UU1
SMR:Q47UU1 STRING:Q47UU1 GeneID:3522462 KEGG:cps:CPS_4792
PATRIC:21472403 BioCyc:CPSY167879:GI48-4793-MONOMER Uniprot:Q47UU1
Length = 649
Score = 155 (59.6 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 72/313 (23%), Positives = 133/313 (42%)
Query: 53 MTSVC-GHIMGL----DFTSKYNNWDKVDPLELFSCPTE-KREATPKLKLPAFLANEAKD 106
+ S C GHI+ D+ ++ W +++ L + + K A + +L L K
Sbjct: 37 VVSWCIGHILAQADPEDYDAELKKW-RMESLPIVPQQWQLKPIARTRSQLTV-LRKLVKQ 94
Query: 107 CEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKP 166
+ ++ D D+EG+ + EV++ + ++ + R S + +K A+ +L KP
Sbjct: 95 ADEIIHAGDPDREGQLLVDEVIDYFK--LSKTKKANIKRLLISDLNLPAVKRALTSL-KP 151
Query: 167 NI-FEARSVDA--RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVE 223
N F S+ A R D G TR T QG+ + S++S G QTP LG V
Sbjct: 152 NSDFMPLSISALARSRADWLYGINLTRAYT--LQGQKTGYN-SVLSVGRVQTPLLGLVVR 208
Query: 224 RHDKIRTFKPEPYWLLDLTLNLNG---VAVSVTWS-----------RGHIFDKSTCNVFF 269
R +I F +P++ + + L+ VA + W G + K+
Sbjct: 209 REQEISEFVSKPFFQVQAHIALSSKDAVAFTAKWQPSENCQPYCDEEGRVLVKALAENVV 268
Query: 270 KAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQG-Y 328
K + + T+ ++ S+ K + P N +L A+ M + + + LY +
Sbjct: 269 KRIANQP-ATISNIDSNEKQQAAPLPFNLSQLQISAAKQFSMNAKLVLDVCQALYERHKL 327
Query: 329 VSYPRTETTQYPE 341
++YPR++ P+
Sbjct: 328 ITYPRSDCRYLPK 340
Score = 92 (37.4 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 48/225 (21%), Positives = 89/225 (39%)
Query: 329 VSYPRTETTQYP-ENFDLVA--VLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPI 385
++YPR++ P E + V SS + ++ +SK K + H I
Sbjct: 328 ITYPRSDCRYLPKEQLKQASGIVNTLANSSLPCNKPAQGANTSFVSKAWNDKKITAHHAI 387
Query: 386 TPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK---- 440
PT K L+ +Y IVR ++ ++ Q + +A F +AK
Sbjct: 388 IPTEKSPENINLNTFEKNVYLLIVRQYLVQFYPAYIFQQTKVELLIAGGNFMSQAKTEKQ 447
Query: 441 ---YLLHPGFTGVMTWSAMKN-----ESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESE 492
+L P S +++ +++P G L+ Q +++E+ T+PP T++
Sbjct: 448 LGWQVLFPKSNKTNNQSKLEHGQEQEQTLPPLTKGQLLHCQQGELIEKHTSPPQSFTDAT 507
Query: 493 LISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIV 537
L+ M GI ++N+ + + T G T GI+
Sbjct: 508 LLGAMT--GISR------YVNDAAIKKVLKETDGLGTDATRAGII 544
Score = 57 (25.1 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 496 LMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
L E G+GTDA+ I+ + +R ++ G+ + T +G+ L+
Sbjct: 528 LKETDGLGTDATRAGIIDLLFKRGFLQ-RQGKAITATKVGVALI 570
>TIGR_CMR|SO_3061 [details] [associations]
symbol:SO_3061 "DNA topoisomerase III" species:211586
"Shewanella oneidensis MR-1" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005738 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 HSSP:P14294 KO:K03169
ProtClustDB:PRK07726 TIGRFAMs:TIGR01056 HOGENOM:HOG000086848
OMA:AANGDCV RefSeq:NP_718626.1 ProteinModelPortal:Q8ECS1 SMR:Q8ECS1
GeneID:1170747 KEGG:son:SO_3061 PATRIC:23525760 Uniprot:Q8ECS1
Length = 702
Score = 169 (64.5 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 97/410 (23%), Positives = 159/410 (38%)
Query: 55 SVC-GHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPA---FLANEAKDCEFL 110
S C GH++ YN K E EK + PK + L K + L
Sbjct: 39 SWCVGHLLEQAEPDAYNPDFKSWKFEHLPIVPEKWQLKPKAATRSQLTVLKKLIKQADTL 98
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNLVKPNIFE 170
V D D+EG+ + EV+ + + + + R S + + +K A+ L F
Sbjct: 99 VNAGDPDREGQLLVDEVIAYLG--VTGDKLQQTQRLLISDLNPQAVKRALSQLRSNREFI 156
Query: 171 ARSVDA--RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKI 228
S A R D G TR T QGK ++S G QTP LG V R ++I
Sbjct: 157 PLSTSALARSRADWLYGMNMTRAYT--IQGKKVGYQG-VLSVGRVQTPLLGLIVRRDEEI 213
Query: 229 RTFKPEPYW-LLDLTLNLNGVAVSVTWS-----------RGHIFDKSTC-NVFFKAVEKE 275
F+ +P++ +L + S W G + K NV + +K
Sbjct: 214 AHFQSKPFYEVLAHLVTDKQQFFSAKWQPSEACQPYMDDEGRVLSKGLAQNVVRRITDKP 273
Query: 276 KHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQG-YVSYPRT 334
VT + + +S P +L+ +++ A+ GM + + LY + ++YPR+
Sbjct: 274 AKVTQLSTKDKQQSAPLPYSLSALQID--AAKRFGMSAKEVLDTCQSLYERHKLITYPRS 331
Query: 335 ETTQYP-ENFDLVA-VLRQQES-SPDWGDHVREVLSNGISKPRKGKDVGDHPPITPT-KL 390
++ P E L + VL S +P+ H SK K V H I PT K
Sbjct: 332 DSRYLPTEQHGLASSVLNAITSGAPELVAHSEAPNPRLKSKAWDDKKVDAHHAIIPTEKQ 391
Query: 391 ATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAK 440
L +LY +I R ++ Y++ + ++ +F +A+
Sbjct: 392 PNLGSLSQRERQLYLHIARQYLAQFYPAYCYSETAVEVTIEGGLFKTKAR 441
Score = 60 (26.2 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 487 YLTESELISLM-EKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLVH 540
Y+T+ E+ ++ E G+GT+A+ I + +R ++ G+ +V T +G L++
Sbjct: 526 YVTDPEIRKILKETDGLGTEATRAGIIELLFKRGFIQ-RQGKSIVATEVGKGLIN 579
Score = 52 (23.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 461 IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELISLM 497
+P G ++ ++VE++T PP T++ L+ M
Sbjct: 484 LPPLILGQVLHCNQGELVEKQTQPPKAFTDATLLGAM 520
>TIGR_CMR|BA_3971 [details] [associations]
symbol:BA_3971 "DNA topoisomerase I" species:198094
"Bacillus anthracis str. Ames" [GO:0003917 "DNA topoisomerase type
I activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006265 SMART:SM00493 GO:GO:0003917
HOGENOM:HOG000004018 KO:K03168 OMA:EFWDIHA Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 ProtClustDB:PRK05582
RefSeq:NP_846214.1 RefSeq:YP_020610.1 RefSeq:YP_029935.1
HSSP:P06612 ProteinModelPortal:Q81WK2 IntAct:Q81WK2 DNASU:1086791
EnsemblBacteria:EBBACT00000009759 EnsemblBacteria:EBBACT00000014833
EnsemblBacteria:EBBACT00000023600 GeneID:1086791 GeneID:2818374
GeneID:2850818 KEGG:ban:BA_3971 KEGG:bar:GBAA_3971 KEGG:bat:BAS3684
BioCyc:BANT260799:GJAJ-3742-MONOMER
BioCyc:BANT261594:GJ7F-3859-MONOMER Uniprot:Q81WK2
Length = 692
Score = 171 (65.3 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 67/286 (23%), Positives = 119/286 (41%)
Query: 274 KEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY--------- 324
K+ +V +V + + T L + A+ L M M +A++LY
Sbjct: 232 KDNAFSVENVTRKERKRNPALPFTTSSLQQEAARKLNMRAKKTMMLAQQLYEGIDLGKQG 291
Query: 325 TQGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HP 383
T G ++Y RT++T+ E A E+ +G E + K K + D H
Sbjct: 292 TVGLITYMRTDSTRISETAQTEARTYITEA---YGT---EYIGAEKKKETKKSNAQDAHE 345
Query: 384 PITPTKLATRTQ-----LDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
I PT + + + L D RLY I F+ + + A+ + F
Sbjct: 346 AIRPTSVMRKPEELKSFLSRDQLRLYKLIWERFVASQMASAIMDTVTARLINNNVQFRAS 405
Query: 439 AKYLLHPGFTGVMTWSA-----MKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESEL 493
+ PGF V S K++ +P + G+ + + ++ + T PP TE+ L
Sbjct: 406 GSVVKFPGFMKVYVESKDDGAEEKDKMLPPLEVGETVFSKDLEPKQHFTQPPPRYTEARL 465
Query: 494 ISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVLV 539
+ +E+ GIG ++ + I +R YV + + +R VPT LG +++
Sbjct: 466 VRTLEELGIGRPSTYVPTLETIQKRGYVGLDN-KRFVPTELGEIVI 510
Score = 146 (56.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 89/406 (21%), Positives = 159/406 (39%)
Query: 100 LANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAA 159
L + AK + + L D D+EGE I + + + +++ S R F+ IT IK +
Sbjct: 67 LKSAAKKAKKVYLAADPDREGEAIAWHLANTLN--VDVESD---CRVVFNEITKDAIKES 121
Query: 160 MWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLG 219
+ N+ + AR+ LD +G + K + K G +S G Q+ +
Sbjct: 122 FKHPRAINMDLVDAQQARRILDRLVGYNISPLLWK--KVKKG------LSAGRVQSVAVR 173
Query: 220 FCVERHDKIRTFKPEPYWLLDLTL-----NLNGVAVSVTWSRGHIFDKSTCNVFFKAVEK 274
+ER +I++F+PE +W + V + + +++ N + + K
Sbjct: 174 LIIEREREIQSFEPEEFWTIKTEFVKGKDTFEASFYGVDGEKVQLTNETQVNEIIEQL-K 232
Query: 275 EKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY---------T 325
+ +V +V + + T L + A+ L M M +A++LY T
Sbjct: 233 DNAFSVENVTRKERKRNPALPFTTSSLQQEAARKLNMRAKKTMMLAQQLYEGIDLGKQGT 292
Query: 326 QGYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGD-HPP 384
G ++Y RT++T+ E A E+ +G E + K K + D H
Sbjct: 293 VGLITYMRTDSTRISETAQTEARTYITEA---YGT---EYIGAEKKKETKKSNAQDAHEA 346
Query: 385 ITPTKLATRTQ-----LDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEA 439
I PT + + + L D RLY I F+ + + A+ + F
Sbjct: 347 IRPTSVMRKPEELKSFLSRDQLRLYKLIWERFVASQMASAIMDTVTARLINNNVQFRASG 406
Query: 440 KYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPP 485
+ PGF V S K++ + K L P++ + V K P
Sbjct: 407 SVVKFPGFMKVYVES--KDDGAEE-KDKMLPPLEVGETVFSKDLEP 449
>TIGR_CMR|GSU_2549 [details] [associations]
symbol:GSU_2549 "DNA topoisomerase I" species:243231
"Geobacter sulfurreducens PCA" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 HOGENOM:HOG000004018
KO:K03168 Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 TIGRFAMs:TIGR01051
ProtClustDB:PRK06599 RefSeq:NP_953595.1 ProteinModelPortal:Q74A42
GeneID:2687248 KEGG:gsu:GSU2549 PATRIC:22027949 OMA:KGKCIPT
BioCyc:GSUL243231:GH27-2526-MONOMER Uniprot:Q74A42
Length = 757
Score = 170 (64.9 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 70/302 (23%), Positives = 124/302 (41%)
Query: 261 DKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIA 320
D++ + KA+E TV V S + +T T L + A+ LG M A
Sbjct: 228 DQAAADRLVKALENATF-TVDKVTKSERKRTPAPPFTTSTLQQEAARKLGFSAKKTMATA 286
Query: 321 ERLYTQ--------GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISK 372
++LY G ++Y RT++ N L Q + +G ++K
Sbjct: 287 QKLYEGVAIDEGLVGLITYMRTDSVVL-SNQALQEA--HQVITSLYGPEY------ALAK 337
Query: 373 PR----KGKDVGD-HPPITPTKLAT-----RTQLDGDAWRLYDYIVRHFIGTLCGDLVYT 422
PR K K+ + H + PT +A + L D ++LYD I + + + +
Sbjct: 338 PRFYKNKAKNAQEAHEAVRPTSIARTPAELKKYLSSDQFKLYDLIWKRTVACQMAEALLD 397
Query: 423 QKVAKFSVADEM-FTMEAKYLLHPGFT-----GVMTWSAMKNESIPDFKPGDLIPIQSVK 476
Q F + PGF GV + K ++P G+L+ + +
Sbjct: 398 QTSVDIGAGKGYRFRAAGTVIRFPGFMKLYIEGVDDQAEEKEGTLPPLTEGELLKLLKLL 457
Query: 477 MVERKTTPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGI 536
+ T PP TE+ L+ +E++GIG ++ +N + +R Y + S +R +P +G+
Sbjct: 458 PEQHFTQPPPRYTEASLVKTLEEYGIGRPSTYASIMNTLLERKYARLDS-KRFIPEDVGM 516
Query: 537 VL 538
V+
Sbjct: 517 VV 518
Score = 134 (52.2 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 76/305 (24%), Positives = 124/305 (40%)
Query: 51 FKMTSVCGHIMGLDFTSKYNNWDKVDPLELFSCPTEKREATPKLKLPAFLANEAKDCEFL 110
+K+ + GH+ L SK + D E P K + A + E K + L
Sbjct: 25 YKVLASYGHVRALP--SKQGSVDVEHDFE----PRYAVLPESKRHIDA-IKKELKASDSL 77
Query: 111 VLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWNL--VKPNI 168
+L D D+EGE I + ++ A+ + P V R F IT I A+ N + ++
Sbjct: 78 LLATDPDREGEAISWHLLAALGVKPE-KPPVPVRRVVFHEITKDAIVHAVENPRDISQDL 136
Query: 169 FEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGFCVERHDKI 228
+A+ AR LD +G + + K +YG +S G Q+ L ER +I
Sbjct: 137 VDAQQ--ARSILDYLVGFNLSPFLWKKI--RYG------LSAGRVQSVALRLICEREKEI 186
Query: 229 RTFKPEPYWLLDLTLNLNG---VAVSVTWSRGHIFDK------STCNVFFKAVEKEKHVT 279
+ F+ + YW + L G ++ + G DK + + KA+E T
Sbjct: 187 QAFQSQEYWTIGAELAKEGGQKCTANLVEAEGKKLDKFDIPDQAAADRLVKALENATF-T 245
Query: 280 VVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYTQ--------GYVSY 331
V V S + +T T L + A+ LG M A++LY G ++Y
Sbjct: 246 VDKVTKSERKRTPAPPFTTSTLQQEAARKLGFSAKKTMATAQKLYEGVAIDEGLVGLITY 305
Query: 332 PRTET 336
RT++
Sbjct: 306 MRTDS 310
>UNIPROTKB|P0A620 [details] [associations]
symbol:topA "DNA topoisomerase 1" species:1773
"Mycobacterium tuberculosis" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] [GO:0060701 "negative regulation
of ribonuclease activity" evidence=IDA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR005733
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005829 GO:GO:0005886 GO:GO:0005524 GO:GO:0040007
GO:GO:0005618 GO:GO:0005694 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0000287 EMBL:BX842583 GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 KO:K03168
ProtClustDB:PRK07561 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
TIGRFAMs:TIGR01051 EMBL:U40159 PIR:G70563 RefSeq:NP_218163.1
RefSeq:NP_338295.1 RefSeq:YP_006517133.1 ProteinModelPortal:P0A620
SMR:P0A620 PhosSite:P12071734 PRIDE:P0A620
EnsemblBacteria:EBMYCT00000003850 EnsemblBacteria:EBMYCT00000070990
GeneID:13317254 GeneID:885608 GeneID:922741 KEGG:mtc:MT3749
KEGG:mtu:Rv3646c KEGG:mtv:RVBD_3646c PATRIC:18130002
TubercuList:Rv3646c eggNOG:COG1754 HOGENOM:HOG000004020 OMA:GKYGPYL
GO:GO:0060701 Uniprot:P0A620
Length = 934
Score = 109 (43.4 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 43/158 (27%), Positives = 67/158 (42%)
Query: 391 ATRTQLDG---DAWRLYDYIVRHFIGTLCGD---LVYTQKVAKFSVADEM-FTMEAKYLL 443
A R +LDG D +RLY+ I + + + D + + ++ S E+ F+ + L
Sbjct: 404 AVRRELDGPNIDDFRLYELIWQRTVASQMADARGMTLSLRITGMSGHQEVVFSATGRTLT 463
Query: 444 HPGFTG--VMTWSAM-------KNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
PGF V T + +P PG + I + T PP TE+ L+
Sbjct: 464 FPGFLKAYVETVDELVGGEADDAERRLPHLTPGQRLDIVELTPDGHATNPPARYTEASLV 523
Query: 495 SLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPT 532
+E+ GIG ++ I I R YV G LVP+
Sbjct: 524 KALEELGIGRPSTYSSIIKTIQDRGYVH-KKGSALVPS 560
Score = 104 (41.7 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 79/296 (26%), Positives = 121/296 (40%)
Query: 76 DPLELFSCPTEKREATPKLKLPAFLANEAKDCEFLVLWLDCDKEGENICFEVMEAVRHQI 135
+PL + S P EKR +L+ L KD + L L D D+EGE I + ++E ++ +I
Sbjct: 80 EPLYIIS-P-EKRSTVSELR--GLL----KDVDELYLATDGDREGEAIAWHLLETLKPRI 131
Query: 136 NINSPKTVWRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKF 195
+ R F IT+ I+AA + P + VDA++ RI Y+
Sbjct: 132 PVK------RMVFHEITEPAIRAAAEH---PRDLDIDLVDAQETR--RILDRLYGYEVSP 180
Query: 196 FQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYW--LLDLTLNLNGV-AVSV 252
K A +S G Q+ V R F+ YW L L +++ A
Sbjct: 181 VLWKKV---APKLSAGRVQSVATRIIVARERDRMAFRSAAYWDILAKLDASVSDPDAAPP 237
Query: 253 TWSRG--HIFDK--STCNVF--FKAVEKEKHVTVVDVQSST--------------KSKTK 292
T+S + + +T F + K V V+D S+T ++ K
Sbjct: 238 TFSARLTAVAGRRVATGRDFDSLGTLRKGDEVIVLDEGSATALAAGLDGTQLTVASAEEK 297
Query: 293 PQALN------TVELMRVASSGLGMGPHHAMQIAERLYTQGYVSYPRTETTQYPEN 342
P A T L + AS L M IA+RLY GY++Y RT++T E+
Sbjct: 298 PYARRPYPPFMTSTLQQEASRKLRFSAERTMSIAQRLYENGYITYMRTDSTTLSES 353
>UNIPROTKB|K7ELI7 [details] [associations]
symbol:TOP3A "DNA topoisomerase 3-alpha" species:9606 "Homo
sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR000380
InterPro:IPR013497 InterPro:IPR013824 Pfam:PF01131 EMBL:AC127537
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 HGNC:HGNC:11992 Ensembl:ENST00000582122
Uniprot:K7ELI7
Length = 133
Score = 117 (46.2 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 435 FTMEAKYLLHPGFTGVMTWSAMKNESIPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
F +L + V + ++ +P ++ G +V+MV+ +T+PP LTE++LI
Sbjct: 1 FVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQPSTVEMVDGETSPPKLLTEADLI 60
Query: 495 SLMEKHGIG 503
+LMEKHGIG
Sbjct: 61 ALMEKHGIG 69
>TIGR_CMR|DET_0717 [details] [associations]
symbol:DET_0717 "DNA topoisomerase I" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 eggNOG:COG0551
HOGENOM:HOG000004018 KO:K03168 OMA:EFWDIHA Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 RefSeq:YP_181458.1
ProteinModelPortal:Q3Z8J1 STRING:Q3Z8J1 GeneID:3229934
KEGG:det:DET0717 PATRIC:21608497 ProtClustDB:PRK05582
BioCyc:DETH243164:GJNF-718-MONOMER Uniprot:Q3Z8J1
Length = 703
Score = 142 (55.0 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 56/230 (24%), Positives = 99/230 (43%)
Query: 327 GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDVGDHPPIT 386
G ++Y RT++T VA R S +G + S KG H I
Sbjct: 297 GLITYMRTDSTNVART--AVAETRDYISEK-YGPAYLPKQARVFSSKVKGAQEA-HEAIR 352
Query: 387 PTKLAT-----RTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTMEAKY 441
PT++ + L + ++LY I + + + V+ + + +Y
Sbjct: 353 PTRIIRTPDLIKKSLSTEQFKLYQLIWQRMMASQMSPAVFDNTTIDIEAKHQ--PSKTRY 410
Query: 442 LLH--------PGFTGVMTWSAMKNE-----SIPDFKPGDLIPIQSVKMVERKTTPPDYL 488
LL PGFT V ++E S+P + G+ + ++S++ + T PP
Sbjct: 411 LLRTTSSVNTFPGFTIVYIEGKDEDEEAAQSSLPPMEEGEELKLKSLEASQHFTQPPPRY 470
Query: 489 TESELISLMEKHGIGTDASIPVHINNICQRNYVTVTSGRRLVPTSLGIVL 538
TE+ LI +E++GIG ++ I+ I +R Y+T G L P+ LG+++
Sbjct: 471 TEATLIKALEQYGIGRPSTYAPTISTIQEREYITKLKGS-LKPSELGMLV 519
Score = 128 (50.1 bits), Expect = 0.00012, P = 0.00012
Identities = 81/324 (25%), Positives = 127/324 (39%)
Query: 91 TPK---LKLPAFLANEAKDC----EFLVLWLDCDKEGENICFEVMEAVRHQININSPKTV 143
TPK LK A + E KD + + L D D+EGE I + + E + N+ PK
Sbjct: 51 TPKYVSLKAKAKVIKELKDAVKNSKAIYLATDPDREGEAIAWHISEVTK--ANLAKPK-- 106
Query: 144 WRARFSAITDKDIKAAMWNLVKPNIFEARSVDARQELDLRIGCAFTRYQTKFFQGKYGDL 203
R F IT + I A N + ++ + AR+ LD +G + + Q G
Sbjct: 107 -RVVFHEITKEAIDKAFKNTRELDMDLVNAQQARRVLDRLVGYKLSPLLWRKVQR--G-- 161
Query: 204 DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN--------GVAVSVTWS 255
+S G Q+ +L V+R +I F YW ++ LN +A VT
Sbjct: 162 ----LSAGRVQSVSLKIIVDREREIEKFVSAEYWNIEALLNKKVKSAAFKASLAGYVTKG 217
Query: 256 RGHIFDKSTCNVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHH 315
+ I ++S K +E + V+ ++ + + P T L + A L
Sbjct: 218 KLEIHNESEAEQIKKELEVSDY-QVLKIKKKSNLRQSPAPFITSTLQQEAWRKLHFSAKQ 276
Query: 316 AMQIAERLYTQ---------GYVSYPRTETTQYPENFDLVAVLRQQESSPDWGDHVREVL 366
M IA++LY G ++Y RT++T VA R S +G
Sbjct: 277 TMVIAQQLYEGLNIEGEGEVGLITYMRTDSTNVART--AVAETRDYISEK-YGPAYLPKQ 333
Query: 367 SNGISKPRKGKDVGDHPPITPTKL 390
+ S KG H I PT++
Sbjct: 334 ARVFSSKVKGAQEA-HEAIRPTRI 356
>UNIPROTKB|C9J9X4 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] InterPro:IPR000380
GO:GO:0007059 GO:GO:0000793 GO:GO:0006265 GO:GO:0003917
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012
HGNC:HGNC:11993 IPI:IPI00879706 ProteinModelPortal:C9J9X4
SMR:C9J9X4 STRING:C9J9X4 Ensembl:ENST00000456075
ArrayExpress:C9J9X4 Bgee:C9J9X4 Uniprot:C9J9X4
Length = 61
Score = 113 (44.8 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 20/30 (66%), Positives = 23/30 (76%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGHI 60
+NGACSVHE+ G G V FKMTSVCGH+
Sbjct: 32 LNGACSVHEYTGTFAGQPVRFKMTSVCGHV 61
>UNIPROTKB|Q9KQF5 [details] [associations]
symbol:topB "DNA topoisomerase 3" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0006265 "DNA topological
change" evidence=ISS] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR005738 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003916 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 KO:K03169
ProtClustDB:PRK07726 TIGRFAMs:TIGR01056 PIR:E82126
RefSeq:NP_231677.1 ProteinModelPortal:Q9KQF5 SMR:Q9KQF5
DNASU:2613424 GeneID:2613424 KEGG:vch:VC2043 PATRIC:20083118
OMA:AANGDCV Uniprot:Q9KQF5
Length = 647
Score = 137 (53.3 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 51/243 (20%), Positives = 105/243 (43%)
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
NV + + VT + + ++ P +L+ +++ A+ + + + LY
Sbjct: 268 NVASRIANQPATVTESEQDQTKQAAPLPYSLSALQID--AAKRYNFSAQQVLDLCQSLYE 325
Query: 326 QG-YVSYPRTETTQYPENF-----DLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDV 379
+ ++YPR++ P+ D+VA + ++ + V + + SK V
Sbjct: 326 KHKLITYPRSDCRYLPKEHLAQAPDVVAAIAN--NAQEMVTAVNDADLSLRSKAWNDSKV 383
Query: 380 GDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
H I PT K A+ L G ++Y I R ++ +Y + F++A +F +
Sbjct: 384 DAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQFYPAAIYAEAKLVFNIAGGIFIAK 443
Query: 439 AKYLLHPGFTGVMTWSAMKNES----IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
+ LL G+ V+T + E +P G ++ + ++ +R+T PP + TE+ L+
Sbjct: 444 GRQLLSAGWK-VLTGQQDEQEECVDKVPPLPVGIVLQCREGEIKQRQTEPPRHFTEATLL 502
Query: 495 SLM 497
M
Sbjct: 503 QAM 505
Score = 131 (51.2 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 69/318 (21%), Positives = 129/318 (40%)
Query: 46 GDLVLFKMTSVCGHIMGLDFTSKYNNWDKVD-PL--ELFSCPTEKREATPKLKLPAFLAN 102
GD+V + + + + + +Y W+ D P+ E + K ++ +L + L
Sbjct: 36 GDIVTWCIGHLLEQVEPDAYDERYKKWNMADLPIIPEQWQLRPRK-SSSQQLTVVRKLLK 94
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWN 162
EA ++ D D+EG+ + EV++ + + + +TV R S + +K A+
Sbjct: 95 EATQ---IIHAGDPDREGQLLVDEVIDYCK--VPKSKKETVQRLLISDLNLSAVKRALQG 149
Query: 163 LVKPNIFEARSVDA--RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGF 220
L F SV A R D G +R T GK ++S G QTP LG
Sbjct: 150 LRSNREFIPLSVSALARSRADWLYGMNMSRAYTLL--GKKAGYQG-VLSVGRVQTPVLGL 206
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNL-NGVA---VSVTWS-----------RGHIFDKSTC 265
V R ++I F P Y+ LD + NG + W G + ++
Sbjct: 207 VVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRARWKPSEACLPWQDEEGRVTNRKLV 266
Query: 266 -NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY 324
NV + + VT + + ++ P +L+ +++ A+ + + + LY
Sbjct: 267 DNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQID--AAKRYNFSAQQVLDLCQSLY 324
Query: 325 TQG-YVSYPRTETTQYPE 341
+ ++YPR++ P+
Sbjct: 325 EKHKLITYPRSDCRYLPK 342
>TIGR_CMR|VC_2043 [details] [associations]
symbol:VC_2043 "DNA topoisomerase III" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005738 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006265 PROSITE:PS50880
SMART:SM00493 GO:GO:0003916 GO:GO:0003917 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 eggNOG:COG0550 KO:K03169 ProtClustDB:PRK07726
TIGRFAMs:TIGR01056 PIR:E82126 RefSeq:NP_231677.1
ProteinModelPortal:Q9KQF5 SMR:Q9KQF5 DNASU:2613424 GeneID:2613424
KEGG:vch:VC2043 PATRIC:20083118 OMA:AANGDCV Uniprot:Q9KQF5
Length = 647
Score = 137 (53.3 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 51/243 (20%), Positives = 105/243 (43%)
Query: 266 NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLYT 325
NV + + VT + + ++ P +L+ +++ A+ + + + LY
Sbjct: 268 NVASRIANQPATVTESEQDQTKQAAPLPYSLSALQID--AAKRYNFSAQQVLDLCQSLYE 325
Query: 326 QG-YVSYPRTETTQYPENF-----DLVAVLRQQESSPDWGDHVREVLSNGISKPRKGKDV 379
+ ++YPR++ P+ D+VA + ++ + V + + SK V
Sbjct: 326 KHKLITYPRSDCRYLPKEHLAQAPDVVAAIAN--NAQEMVTAVNDADLSLRSKAWNDSKV 383
Query: 380 GDHPPITPT-KLATRTQLDGDAWRLYDYIVRHFIGTLCGDLVYTQKVAKFSVADEMFTME 438
H I PT K A+ L G ++Y I R ++ +Y + F++A +F +
Sbjct: 384 DAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQFYPAAIYAEAKLVFNIAGGIFIAK 443
Query: 439 AKYLLHPGFTGVMTWSAMKNES----IPDFKPGDLIPIQSVKMVERKTTPPDYLTESELI 494
+ LL G+ V+T + E +P G ++ + ++ +R+T PP + TE+ L+
Sbjct: 444 GRQLLSAGWK-VLTGQQDEQEECVDKVPPLPVGIVLQCREGEIKQRQTEPPRHFTEATLL 502
Query: 495 SLM 497
M
Sbjct: 503 QAM 505
Score = 131 (51.2 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 69/318 (21%), Positives = 129/318 (40%)
Query: 46 GDLVLFKMTSVCGHIMGLDFTSKYNNWDKVD-PL--ELFSCPTEKREATPKLKLPAFLAN 102
GD+V + + + + + +Y W+ D P+ E + K ++ +L + L
Sbjct: 36 GDIVTWCIGHLLEQVEPDAYDERYKKWNMADLPIIPEQWQLRPRK-SSSQQLTVVRKLLK 94
Query: 103 EAKDCEFLVLWLDCDKEGENICFEVMEAVRHQININSPKTVWRARFSAITDKDIKAAMWN 162
EA ++ D D+EG+ + EV++ + + + +TV R S + +K A+
Sbjct: 95 EATQ---IIHAGDPDREGQLLVDEVIDYCK--VPKSKKETVQRLLISDLNLSAVKRALQG 149
Query: 163 LVKPNIFEARSVDA--RQELDLRIGCAFTRYQTKFFQGKYGDLDASLISYGPCQTPTLGF 220
L F SV A R D G +R T GK ++S G QTP LG
Sbjct: 150 LRSNREFIPLSVSALARSRADWLYGMNMSRAYTLL--GKKAGYQG-VLSVGRVQTPVLGL 206
Query: 221 CVERHDKIRTFKPEPYWLLDLTLNL-NGVA---VSVTWS-----------RGHIFDKSTC 265
V R ++I F P Y+ LD + NG + W G + ++
Sbjct: 207 VVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRARWKPSEACLPWQDEEGRVTNRKLV 266
Query: 266 -NVFFKAVEKEKHVTVVDVQSSTKSKTKPQALNTVELMRVASSGLGMGPHHAMQIAERLY 324
NV + + VT + + ++ P +L+ +++ A+ + + + LY
Sbjct: 267 DNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQID--AAKRYNFSAQQVLDLCQSLY 324
Query: 325 TQG-YVSYPRTETTQYPE 341
+ ++YPR++ P+
Sbjct: 325 EKHKLITYPRSDCRYLPK 342
>UNIPROTKB|C9JEQ1 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] InterPro:IPR000380
GO:GO:0007059 GO:GO:0000793 GO:GO:0006265 GO:GO:0003917
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012
HGNC:HGNC:11993 IPI:IPI00880050 ProteinModelPortal:C9JEQ1
SMR:C9JEQ1 STRING:C9JEQ1 Ensembl:ENST00000449704
ArrayExpress:C9JEQ1 Bgee:C9JEQ1 Uniprot:C9JEQ1
Length = 60
Score = 110 (43.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 20/29 (68%), Positives = 22/29 (75%)
Query: 31 MNGACSVHEWVGPLFGDLVLFKMTSVCGH 59
+NGACSVHE+ G G V FKMTSVCGH
Sbjct: 32 LNGACSVHEYTGTFAGQPVRFKMTSVCGH 60
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.416 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 562 562 0.0010 119 3 11 22 0.38 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 65
No. of states in DFA: 628 (67 KB)
Total size of DFA: 347 KB (2173 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 44.94u 0.08s 45.02t Elapsed: 00:00:11
Total cpu time: 44.96u 0.08s 45.04t Elapsed: 00:00:11
Start: Thu Aug 15 11:45:24 2013 End: Thu Aug 15 11:45:35 2013