BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8715
         (164 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GY1|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
           LACTONIZING Protein From Clostridium Beijerinckii Ncimb
           8052
 pdb|3GY1|B Chain B, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
           LACTONIZING Protein From Clostridium Beijerinckii Ncimb
           8052
          Length = 408

 Score = 27.7 bits (60), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)

Query: 131 FGLKVSWHTPCFDIARINLQVN 152
           FG++++WHTP  DI  I + VN
Sbjct: 302 FGVRIAWHTPS-DITPIGVAVN 322


>pdb|3S47|A Chain A, Crystal Structure Of Enolase Superfamily Member From
           Clostridium Beijerincki Complexed With Mg
 pdb|3S47|B Chain B, Crystal Structure Of Enolase Superfamily Member From
           Clostridium Beijerincki Complexed With Mg
          Length = 401

 Score = 27.7 bits (60), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)

Query: 131 FGLKVSWHTPCFDIARINLQVN 152
           FG++++WHTP  DI  I + VN
Sbjct: 302 FGVRIAWHTPS-DITPIGVAVN 322


>pdb|2EXZ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T22c
          Length = 149

 Score = 27.3 bits (59), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 107 NIKKAHSQPVLVVKNYNGRCLPLMF 131
           + KK H +P  ++K  +G C+ LM+
Sbjct: 3   STKKLHKEPATLIKAIDGDCVKLMY 27


>pdb|4HNL|A Chain A, Crystal Structure Of Enolase Egbg_01401 (Target
           Efi-502226) From Enterococcus Gallinarum Eg2
          Length = 421

 Score = 26.9 bits (58), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 16/21 (76%), Gaps = 1/21 (4%)

Query: 132 GLKVSWHTPCFDIARINLQVN 152
           G++++WHTP  DI+ + L VN
Sbjct: 323 GVRIAWHTPS-DISPVGLAVN 342


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,715,598
Number of Sequences: 62578
Number of extensions: 174327
Number of successful extensions: 606
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 605
Number of HSP's gapped (non-prelim): 6
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.7 bits)