Query psy8715
Match_columns 164
No_of_seqs 196 out of 736
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 17:25:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1314|consensus 100.0 4.7E-51 1E-55 352.5 12.3 161 3-163 181-350 (414)
2 KOG1315|consensus 99.0 3.5E-10 7.6E-15 97.8 6.6 82 6-92 190-281 (307)
3 KOG1313|consensus 98.7 1.5E-08 3.3E-13 86.5 5.7 84 7-90 204-303 (309)
4 KOG1311|consensus 98.5 1.6E-07 3.4E-12 79.9 5.8 65 6-77 199-264 (299)
5 COG5273 Uncharacterized protei 95.7 0.024 5.3E-07 49.2 5.7 63 15-77 199-278 (309)
6 PF14654 Epiglycanin_C: Mucin, 78.1 3.5 7.5E-05 30.7 3.7 37 2-39 14-50 (106)
7 KOG4792|consensus 70.8 2.8 6.1E-05 35.8 1.9 26 136-161 234-260 (293)
8 KOG0509|consensus 70.2 2 4.3E-05 40.8 0.9 42 36-77 541-583 (600)
9 PF12852 Cupin_6: Cupin 66.9 9.3 0.0002 29.8 4.0 20 145-164 55-74 (186)
10 PF12729 4HB_MCP_1: Four helix 58.0 18 0.00039 26.4 4.0 33 11-43 8-40 (181)
11 PF05568 ASFV_J13L: African sw 57.6 30 0.00066 27.7 5.3 9 58-66 68-76 (189)
12 PF04584 Pox_A28: Poxvirus A28 56.6 11 0.00023 29.6 2.5 79 19-99 9-112 (140)
13 PF06716 DUF1201: Protein of u 53.4 40 0.00086 21.9 4.4 27 8-34 6-32 (54)
14 KOG3416|consensus 53.0 8 0.00017 30.0 1.4 21 140-160 53-73 (134)
15 PF01146 Caveolin: Caveolin; 53.0 33 0.00071 27.0 4.8 29 9-37 74-102 (148)
16 KOG2729|consensus 51.0 41 0.00088 26.3 5.0 17 59-76 37-53 (137)
17 PF05814 DUF843: Baculovirus p 50.6 41 0.00089 24.2 4.6 33 20-53 30-62 (83)
18 PF11779 DUF3317: Protein of u 50.0 44 0.00096 22.0 4.4 35 3-37 22-57 (58)
19 PF14015 DUF4231: Protein of u 48.3 65 0.0014 22.8 5.5 39 16-54 57-96 (112)
20 smart00739 KOW KOW (Kyprides, 42.8 21 0.00046 19.0 1.7 13 149-161 2-14 (28)
21 PF03311 Cornichon: Cornichon 41.0 51 0.0011 25.0 4.2 41 14-71 8-48 (128)
22 PF14685 Tricorn_PDZ: Tricorn 39.8 23 0.00049 25.4 1.9 39 114-160 12-51 (88)
23 KOG2417|consensus 39.0 32 0.0007 31.3 3.1 72 17-107 81-152 (462)
24 PF07653 SH3_2: Variant SH3 do 35.9 38 0.00082 21.2 2.3 13 147-159 16-28 (55)
25 PF09879 DUF2106: Predicted me 35.4 27 0.00058 27.6 1.9 10 58-67 56-65 (153)
26 PRK09570 rpoH DNA-directed RNA 34.4 30 0.00065 24.5 1.8 15 147-161 50-64 (79)
27 PF11044 TMEMspv1-c74-12: Plec 34.3 1.3E+02 0.0028 19.3 4.6 27 10-36 6-32 (49)
28 PF06143 Baculo_11_kDa: Baculo 34.0 1.1E+02 0.0023 22.0 4.6 30 16-45 39-68 (84)
29 TIGR03064 sortase_srtB sortase 33.1 1.1E+02 0.0024 25.5 5.3 21 74-94 68-89 (232)
30 PF01191 RNA_pol_Rpb5_C: RNA p 32.3 34 0.00073 23.9 1.8 15 147-161 47-61 (74)
31 PF14851 FAM176: FAM176 family 32.3 67 0.0015 25.4 3.7 22 7-28 20-41 (153)
32 PF06072 Herpes_US9: Alphaherp 30.7 65 0.0014 21.8 2.9 22 11-32 38-59 (60)
33 PF14604 SH3_9: Variant SH3 do 30.3 51 0.0011 20.5 2.2 15 146-160 12-26 (49)
34 COG3477 Predicted periplasmic/ 29.9 1.5E+02 0.0032 24.1 5.2 15 63-77 133-147 (176)
35 PRK14725 pyruvate kinase; Prov 29.9 62 0.0013 31.1 3.6 53 107-160 278-346 (608)
36 PF03079 ARD: ARD/ARD' family; 29.8 23 0.0005 27.9 0.7 18 146-163 116-133 (157)
37 PF06837 Fijivirus_P9-2: Fijiv 29.6 1.1E+02 0.0023 25.5 4.4 33 2-34 108-140 (214)
38 PHA03048 IMV membrane protein; 29.5 73 0.0016 23.3 3.2 37 8-45 44-80 (93)
39 KOG1226|consensus 29.4 59 0.0013 32.0 3.4 48 5-52 709-756 (783)
40 PF09125 COX2-transmemb: Cytoc 29.4 93 0.002 19.1 3.1 21 8-28 14-34 (38)
41 PF05767 Pox_A14: Poxvirus vir 29.3 1E+02 0.0022 22.5 3.9 28 8-35 45-72 (92)
42 PF00467 KOW: KOW motif; Inte 28.8 31 0.00067 19.7 0.9 11 151-161 1-11 (32)
43 PF11808 DUF3329: Domain of un 28.4 1.5E+02 0.0032 20.9 4.6 25 20-48 32-56 (90)
44 PF03376 Adeno_E3B: Adenovirus 28.1 2E+02 0.0044 19.8 5.7 17 2-19 8-24 (67)
45 PF10883 DUF2681: Protein of u 28.0 1.6E+02 0.0034 21.2 4.7 36 16-51 8-47 (87)
46 smart00326 SH3 Src homology 3 27.5 60 0.0013 19.1 2.2 18 143-160 15-32 (58)
47 COG0361 InfA Translation initi 27.1 1.4E+02 0.0031 20.9 4.2 29 130-158 27-56 (75)
48 PF14250 AbrB-like: AbrB-like 26.9 67 0.0015 22.4 2.5 45 108-163 23-67 (71)
49 COG2063 FlgH Flagellar basal b 26.6 47 0.001 28.1 2.0 24 129-158 58-81 (230)
50 TIGR00008 infA translation ini 26.3 46 0.001 22.9 1.6 14 145-158 41-54 (68)
51 PF01505 Vault: Major Vault Pr 25.4 57 0.0012 20.0 1.8 29 130-158 7-35 (43)
52 PF10260 SAYSvFN: Uncharacteri 24.8 1.8E+02 0.004 20.1 4.4 48 27-106 22-69 (71)
53 COG2012 RPB5 DNA-directed RNA 24.1 57 0.0012 23.3 1.7 16 146-161 52-67 (80)
54 PF07438 DUF1514: Protein of u 24.1 87 0.0019 21.5 2.6 15 11-25 3-17 (66)
55 PF07172 GRP: Glycine rich pro 23.8 86 0.0019 22.7 2.7 10 9-18 5-14 (95)
56 PF12072 DUF3552: Domain of un 23.7 1.1E+02 0.0024 24.6 3.7 23 11-33 2-24 (201)
57 PF07883 Cupin_2: Cupin domain 23.2 35 0.00075 21.6 0.5 22 142-163 34-55 (71)
58 COG1935 Uncharacterized conser 22.4 62 0.0013 24.8 1.8 17 144-160 34-50 (122)
59 cd06555 ASCH_PF0470_like ASC-1 22.4 63 0.0014 24.1 1.8 31 129-160 13-43 (109)
60 PF05683 Fumerase_C: Fumarase 22.4 39 0.00085 28.0 0.7 27 132-158 26-52 (205)
61 PTZ00241 40S ribosomal protein 22.1 61 0.0013 25.9 1.8 21 138-158 106-126 (158)
62 PF03120 DNA_ligase_OB: NAD-de 22.1 63 0.0014 22.9 1.7 15 146-160 47-61 (82)
63 KOG2384|consensus 22.0 47 0.001 27.8 1.1 37 71-109 6-58 (223)
64 PF10332 DUF2418: Protein of u 21.8 3.2E+02 0.007 19.8 5.5 31 17-50 38-68 (99)
65 TIGR01080 rplX_A_E ribosomal p 21.7 56 0.0012 24.6 1.4 27 136-162 22-55 (114)
66 PF07732 Cu-oxidase_3: Multico 21.4 43 0.00092 24.7 0.7 15 144-158 25-39 (117)
67 PF12606 RELT: Tumour necrosis 21.4 1E+02 0.0022 20.0 2.4 17 17-33 7-23 (50)
68 PF15179 Myc_target_1: Myc tar 21.3 1.2E+02 0.0027 24.9 3.4 22 11-32 21-42 (197)
69 PRK01191 rpl24p 50S ribosomal 21.1 65 0.0014 24.6 1.7 17 145-161 42-58 (120)
70 PRK12442 translation initiatio 20.7 61 0.0013 23.4 1.4 15 144-158 42-56 (87)
71 PF15179 Myc_target_1: Myc tar 20.7 1.6E+02 0.0036 24.3 4.0 30 9-38 15-44 (197)
72 COG3763 Uncharacterized protei 20.6 1.9E+02 0.004 20.2 3.7 19 11-29 6-24 (71)
73 PF12380 Peptidase_C62: Gill-a 20.5 42 0.0009 28.0 0.6 48 38-99 13-68 (284)
74 PHA03049 IMV membrane protein; 20.4 1.4E+02 0.003 20.7 3.0 31 15-45 4-35 (68)
75 PF08173 YbgT_YccB: Membrane b 20.4 1.5E+02 0.0032 17.0 2.7 16 13-28 4-19 (28)
76 PF05961 Chordopox_A13L: Chord 20.1 1.5E+02 0.0032 20.5 3.1 31 15-45 4-35 (68)
No 1
>KOG1314|consensus
Probab=100.00 E-value=4.7e-51 Score=352.50 Aligned_cols=161 Identities=42% Similarity=0.709 Sum_probs=155.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHhhhhhhhhh----cC--CCccCCcccchHhHHHHhh
Q psy8715 3 LSPGKRLFHWGPLLAIVGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKATKRK----RQ--DKFVYPYNLGWKKNIHLVF 76 (164)
Q Consensus 3 ~~~~~~~~~if~~vL~i~v~iavg~Ll~~hi~lIl~NqTTIE~~~~~k~~~rr----~~--~~~~~PYDlG~~~Nl~~Vf 76 (164)
+++.++++.+|+++|+++|+|++++||+.|++.|++|+|.||+|+.+|+.+|| .+ +++.+|||+||+.|+++||
T Consensus 181 ft~~~li~~vfslgla~gv~la~t~Lf~~qlk~Il~nrt~IE~wi~~Ka~~rr~~~~~d~~~~f~ypydlgWr~n~r~vf 260 (414)
T KOG1314|consen 181 FTLSSLIALVFSLGLAIGVVLALTMLFFIQLKQILNNRTGIESWIVEKAMDRREYYFNDDEGEFTYPYDLGWRINLREVF 260 (414)
T ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhccCCCCceeeeccccccccHHHHh
Confidence 56778899999999999999999999999999999999999999999999887 23 7899999999999999999
Q ss_pred Cc--ccCCCCceecccCCccccccchHHHHHHHHhhhcCCCeEEeeccCceEeee-cccceeecccCCCCcCcccccCCC
Q psy8715 77 GS--SSISNGITWPVVEGCHQYSLTMEQLEQKNIKKAHSQPVLVVKNYNGRCLPL-MFGLKVSWHTPCFDIARINLQVNE 153 (164)
Q Consensus 77 GW--~p~gDGi~wpv~~~c~qy~lt~eql~qk~~kr~r~~~~~~~~~~~g~~~~~-~~g~~~~~~~P~~de~ri~~~~gd 153 (164)
-| .+.|||+.|||.+||+||+||.|||+||++||+|+|.|+|+++++|+|||+ ++|++|++..||+|||||+|+|||
T Consensus 261 ~~~~~~~gdg~~wPv~~gc~qytlt~eql~qk~~kr~rsr~~~~~~~~tG~~~p~~k~G~~v~~~~pc~ddprisL~p~d 340 (414)
T KOG1314|consen 261 FQNKKEEGDGIEWPVVEGCVQYTLTIEQLTQKLDKRGRSRLFKCIEDVTGDCCPIFKQGIKVYEANPCTDDPRISLPPGD 340 (414)
T ss_pred hhccccCCCCccccccCcccccceeHHHHHHHHHhhcCeEEEEeccCCCCCcccccccceeeeeeccCCCCcccccCCCc
Confidence 98 789999999999999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred EEEEeeeecc
Q psy8715 154 TVLVTRFRNE 163 (164)
Q Consensus 154 ~~~vtr~~~~ 163 (164)
.|+|||+..|
T Consensus 341 ~i~~tr~~~~ 350 (414)
T KOG1314|consen 341 GIKATRGFNH 350 (414)
T ss_pred ceeeeeeeec
Confidence 9999999987
No 2
>KOG1315|consensus
Probab=99.05 E-value=3.5e-10 Score=97.84 Aligned_cols=82 Identities=27% Similarity=0.298 Sum_probs=65.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHhhhhhhhhhcCCCccCCcccchHhHHHHhhC-----c--
Q psy8715 6 GKRLFHWGPLLAIVGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKATKRKRQDKFVYPYNLGWKKNIHLVFG-----S-- 78 (164)
Q Consensus 6 ~~~~~~if~~vL~i~v~iavg~Ll~~hi~lIl~NqTTIE~~~~~k~~~rr~~~~~~~PYDlG~~~Nl~~VfG-----W-- 78 (164)
...+.++|++++++.+.++++.|+.||++||++|+||||.+...... .+....+.|++ ..|++|+|| |
T Consensus 190 ~~~~~~~~~~~~~~~f~i~l~~~l~~h~~Li~~N~TTiE~~~~~~~~---~~~~~~~~~~~--~~n~~~vfg~~~~~wl~ 264 (307)
T KOG1315|consen 190 LLLFFIVFLFLVAIAFSISLSGLLCFHTYLILKNKTTIEAYKSPVFR---SGLHNKNGFNL--YVNFREVFGSNLLYWLL 264 (307)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhcccccc---ccccccCCcce--eecHHHHhCCCceEEec
Confidence 34688899999999999999999999999999999999996543221 22344566776 789999999 4
Q ss_pred ---ccCCCCceecccCC
Q psy8715 79 ---SSISNGITWPVVEG 92 (164)
Q Consensus 79 ---~p~gDGi~wpv~~~ 92 (164)
.+.+||..+|.+..
T Consensus 265 P~~~s~~~~~~~~~~~~ 281 (307)
T KOG1315|consen 265 PIDSSWGDGVSFPLRGD 281 (307)
T ss_pred cccCccccCcccccccc
Confidence 66788888887653
No 3
>KOG1313|consensus
Probab=98.74 E-value=1.5e-08 Score=86.47 Aligned_cols=84 Identities=26% Similarity=0.227 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHhhhhhhhhhcCCCccCCcccchHhHHHHhhC-------c-
Q psy8715 7 KRLFHWGPLLAIVGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKATKRKRQDKFVYPYNLGWKKNIHLVFG-------S- 78 (164)
Q Consensus 7 ~~~~~if~~vL~i~v~iavg~Ll~~hi~lIl~NqTTIE~~~~~k~~~rr~~~~~~~PYDlG~~~Nl~~VfG-------W- 78 (164)
.+..++.++.+++.+++++|.|..||.++|..+.|+||..++.|.+++......+|||+.|.++||+.+|| |
T Consensus 204 ~~t~~~~~~fls~~~lv~vg~l~~W~~vlI~~G~tsi~~~~~~~e~k~~~a~~R~~~~n~g~k~nWr~fLg~~~~r~~wk 283 (309)
T KOG1313|consen 204 TRTSIANLWFLSVRVLVAVGLLTAWHAVLISRGETSIEQLINIKERKRYLAHLRSNPTNFGGKANWRNFLGLFRGRHFWK 283 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhheeeehhhhhHHHHHHHHHhHhHHHhccCCCcccchHHHHHHhhccccCCceeE
Confidence 34566778889999999999999999999999999999999888876553334589999999999999999 5
Q ss_pred --------ccCCCCceeccc
Q psy8715 79 --------SSISNGITWPVV 90 (164)
Q Consensus 79 --------~p~gDGi~wpv~ 90 (164)
.|.+.|-+|++.
T Consensus 284 ~v~lPt~~~p~~~~~~~~~~ 303 (309)
T KOG1313|consen 284 TVLLPTIRKPVKYGDSKEKS 303 (309)
T ss_pred EEeccccccccccCCccccc
Confidence 677888888743
No 4
>KOG1311|consensus
Probab=98.52 E-value=1.6e-07 Score=79.92 Aligned_cols=65 Identities=23% Similarity=0.202 Sum_probs=53.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHhhhhhhhhhcCCCc-cCCcccchHhHHHHhhC
Q psy8715 6 GKRLFHWGPLLAIVGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKATKRKRQDKF-VYPYNLGWKKNIHLVFG 77 (164)
Q Consensus 6 ~~~~~~if~~vL~i~v~iavg~Ll~~hi~lIl~NqTTIE~~~~~k~~~rr~~~~~-~~PYDlG~~~Nl~~VfG 77 (164)
......++.+++++.++++++.|+.+|+++|.+|+||+|.... .+ ... .+|||.|.++|++++||
T Consensus 199 ~~~~~~~~l~~~~~~~~~~~~~l~~fh~~li~~~~Tt~e~~~~--~~-----~~~~~~~~~~g~~~n~~~~~~ 264 (299)
T KOG1311|consen 199 AGTFLSALLGLLSALFLAFTSALLCFHIYLIKSGSTTYESIKS--LD-----FVSRSNPYDLGLLKNLQEVFG 264 (299)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhheeeEecCcchhhhhhc--cc-----cccccCCCchhHHHHHHHHhC
Confidence 3455666667789999999999999999999999999988543 11 223 48999999999999999
No 5
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=95.67 E-value=0.024 Score=49.23 Aligned_cols=63 Identities=25% Similarity=0.299 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHhhhhhhhhh--------c---------CCCccCCcccchHhHHHHhhC
Q psy8715 15 LLAIVGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKATKRK--------R---------QDKFVYPYNLGWKKNIHLVFG 77 (164)
Q Consensus 15 ~vL~i~v~iavg~Ll~~hi~lIl~NqTTIE~~~~~k~~~rr--------~---------~~~~~~PYDlG~~~Nl~~VfG 77 (164)
..+++.+++.+.+|+.+|.++++.|+|++|.+...+..+.- . ..+...|+++|.-+|+..+++
T Consensus 199 ~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~i~~ 278 (309)
T COG5273 199 SLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFPLCRESNLPFTNIFDSSEGALPLDLGIGQNLSTIKG 278 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccceecccccchhccCCcCceeccCCCccccccccCccccceeecC
Confidence 57778889999999999999999999999998765443211 0 122456777777777777776
No 6
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=78.09 E-value=3.5 Score=30.65 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=21.7
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8715 2 CLSPGKRLFHWGPLLAIVGVVIAVGMLFYFQVKAILKN 39 (164)
Q Consensus 2 ~~~~~~~~~~if~~vL~i~v~iavg~Ll~~hi~lIl~N 39 (164)
-|+|++.|++.++.+++ +|.+++|++|+.--++=++|
T Consensus 14 sL~PWeIfLItLasVvv-avGl~aGLfFcvR~~lslrn 50 (106)
T PF14654_consen 14 SLKPWEIFLITLASVVV-AVGLFAGLFFCVRNSLSLRN 50 (106)
T ss_pred CccchHHHHHHHHHHHH-HHHHHHHHHHHhhhcccccc
Confidence 37899988877665443 35555666665533443433
No 7
>KOG4792|consensus
Probab=70.78 E-value=2.8 Score=35.80 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=20.7
Q ss_pred ecccC-CCCcCcccccCCCEEEEeeee
Q psy8715 136 SWHTP-CFDIARINLQVNETVLVTRFR 161 (164)
Q Consensus 136 ~~~~P-~~de~ri~~~~gd~~~vtr~~ 161 (164)
+=+-| ..|-+-++|++||+|.||+..
T Consensus 234 q~RVPnAYDkTaL~levGdiVkVTk~n 260 (293)
T KOG4792|consen 234 QKRVPNAYDKTALALEVGDIVKVTKKN 260 (293)
T ss_pred hhcCCCccChhhhhhhcCcEEEEEeec
Confidence 33567 567778999999999999853
No 8
>KOG0509|consensus
Probab=70.22 E-value=2 Score=40.79 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=32.0
Q ss_pred HhcCcchhhhHhhhhhhhhh-cCCCccCCcccchHhHHHHhhC
Q psy8715 36 ILKNQTNIEDWIVEKATKRK-RQDKFVYPYNLGWKKNIHLVFG 77 (164)
Q Consensus 36 Il~NqTTIE~~~~~k~~~rr-~~~~~~~PYDlG~~~Nl~~VfG 77 (164)
++.+.||+|.|...+...-. +..+...|++.|+.+|+.+++=
T Consensus 541 ~c~~~tt~e~~n~~r~~~~~~~~~~~~~~~s~g~~~Nl~df~~ 583 (600)
T KOG0509|consen 541 ACLHLTTNEQINVKRYEHLGIKRGPTRSPFSPGPIRNLVDFFL 583 (600)
T ss_pred eeecccHHHHHHHHHhhccccccCcCCCCCCchhhhcchheee
Confidence 56678899998776554332 4456788999999999999873
No 9
>PF12852 Cupin_6: Cupin
Probab=66.90 E-value=9.3 Score=29.76 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=17.8
Q ss_pred CcccccCCCEEEEeeeeccC
Q psy8715 145 ARINLQVNETVLVTRFRNEE 164 (164)
Q Consensus 145 ~ri~~~~gd~~~vtr~~~~~ 164 (164)
+.+.|+.||+|.+.|+..|.
T Consensus 55 ~~~~L~~GDivllp~g~~H~ 74 (186)
T PF12852_consen 55 EPIRLEAGDIVLLPRGTAHV 74 (186)
T ss_pred CeEEecCCCEEEEcCCCCeE
Confidence 45999999999999999883
No 10
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=57.96 E-value=18 Score=26.45 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Q psy8715 11 HWGPLLAIVGVVIAVGMLFYFQVKAILKNQTNI 43 (164)
Q Consensus 11 ~if~~vL~i~v~iavg~Ll~~hi~lIl~NqTTI 43 (164)
++++|++.+++++.+|++.++.+.-+-.+..++
T Consensus 8 L~~~f~~~~~l~~~~~~~~~~~l~~~~~~~~~i 40 (181)
T PF12729_consen 8 LILGFGLIILLLLIVGIVGLYSLSQINQNVEEI 40 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777778888888889888888777665
No 11
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=57.60 E-value=30 Score=27.67 Aligned_cols=9 Identities=33% Similarity=0.685 Sum_probs=7.0
Q ss_pred CCccCCccc
Q psy8715 58 DKFVYPYNL 66 (164)
Q Consensus 58 ~~~~~PYDl 66 (164)
-.|+|||+-
T Consensus 68 iQfinpyqD 76 (189)
T PF05568_consen 68 IQFINPYQD 76 (189)
T ss_pred ccccCcccc
Confidence 458999985
No 12
>PF04584 Pox_A28: Poxvirus A28 family; InterPro: IPR007664 The poxvirus A28 protein is expressed at late times during the virus replication cycle and is a membrane component of the intracellular mature virion. Repression of A28 inhibits cell-to-cell spread, suggesting that all poxviruses use a common A28-dependent mechanism of cell penetration []. An N-terminal hydrophobic sequence, present in all poxvirus A28 orthologues, anchors the protein in the virion surface membrane so that most of it is exposed to the cytoplasm [].; GO: 0016032 viral reproduction, 0019031 viral envelope
Probab=56.56 E-value=11 Score=29.61 Aligned_cols=79 Identities=23% Similarity=0.253 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhhHhhhhhh--hhh--c--------CCCccCCcccchHhHHHHhh----------
Q psy8715 19 VGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKAT--KRK--R--------QDKFVYPYNLGWKKNIHLVF---------- 76 (164)
Q Consensus 19 i~v~iavg~Ll~~hi~lIl~NqTTIE~~~~~k~~--~rr--~--------~~~~~~PYDlG~~~Nl~~Vf---------- 76 (164)
+.++.+...|+++|+|.|..|--.|-.+....+. +.+ + -++-...|| .++=|+-|.
T Consensus 9 ii~at~aic~i~fQ~y~iYeNYdnI~EFN~~~~~LEYskt~g~~~iDr~V~DPND~~~D--vkqKWRCv~~~~~yvs~S~ 86 (140)
T PF04584_consen 9 IILATAAICFILFQLYYIYENYDNIKEFNDAHSALEYSKTIGGNYIDRRVFDPNDEVYD--VKQKWRCVKYNNVYVSASE 86 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhccceeEeecCCCccccceeeCCCCcccC--hhhceEEEeeCCeEEEEEe
Confidence 3344556678899999999998777654432221 111 1 123334455 355555544
Q ss_pred -Cc--ccCCCCceecccCCccccccc
Q psy8715 77 -GS--SSISNGITWPVVEGCHQYSLT 99 (164)
Q Consensus 77 -GW--~p~gDGi~wpv~~~c~qy~lt 99 (164)
|. .+.|....|+..++|-.|+++
T Consensus 87 FGF~s~~~~~~~~f~~~~dCid~~Fs 112 (140)
T PF04584_consen 87 FGFKSNSGGNIRKFTTLEDCIDYTFS 112 (140)
T ss_pred cceEecCCCCceecCCHHHHHHHhcC
Confidence 22 445677788888888887764
No 13
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=53.41 E-value=40 Score=21.90 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8715 8 RLFHWGPLLAIVGVVIAVGMLFYFQVK 34 (164)
Q Consensus 8 ~~~~if~~vL~i~v~iavg~Ll~~hi~ 34 (164)
+.++.+.|++.+.+++++...++|-.|
T Consensus 6 Rs~L~~~F~~lIC~Fl~~~~~F~~F~~ 32 (54)
T PF06716_consen 6 RSYLLLAFGFLICLFLFCLVVFIWFVY 32 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777666555444
No 14
>KOG3416|consensus
Probab=53.03 E-value=8 Score=30.01 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=18.8
Q ss_pred CCCCcCcccccCCCEEEEeee
Q psy8715 140 PCFDIARINLQVNETVLVTRF 160 (164)
Q Consensus 140 P~~de~ri~~~~gd~~~vtr~ 160 (164)
-.|||+.=.++|||+|+.|++
T Consensus 53 svW~e~~~~~~PGDIirLt~G 73 (134)
T KOG3416|consen 53 SVWDEEGCLIQPGDIIRLTGG 73 (134)
T ss_pred EEecCcCcccCCccEEEeccc
Confidence 378999999999999999986
No 15
>PF01146 Caveolin: Caveolin; InterPro: IPR001612 Caveolins [, , ] are a family of integral membrane proteins which are the principal components of caveolae membranes. Cavoleae are flask-shaped plasma membrane invaginations whose exact cellular function is not yet clear. Caveolins may act as scaffolding proteins within caveolar membranes by compartmentalizing and concentrating signalling molecules. Various classes of signalling molecules, including G-protein subunits, receptor and non-receptor tyrosine kinases, endothelial nitric oxide synthase (eNOS), and small GTPases, bind Cav-1 through its 'caveolin-scaffolding domain'. Currently, three different forms of caveolins are known: caveolin-1 (or VIP21), caveolin-2 and caveolin-3 (or M-caveolin). Caveolins are proteins of about 20 Kd, they form high molecular mass homo-oligomers. Structurally they seem to have N-terminal and C-terminal hydrophilic segments and a long central transmembrane domain that probably forms a hairpin in the membrane. Both extremities are known to face the cytoplasm. Caveolae are enriched with cholesterol and Cav-1 is one of the few proteins that binds cholesterol tightly and specifically.
Probab=52.99 E-value=33 Score=27.03 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8715 9 LFHWGPLLAIVGVVIAVGMLFYFQVKAIL 37 (164)
Q Consensus 9 ~~~if~~vL~i~v~iavg~Ll~~hi~lIl 37 (164)
+.++++..+|+...+..+.|.+.|+|.+.
T Consensus 74 Ls~ilaiP~A~~~Gi~FA~lsf~hIW~v~ 102 (148)
T PF01146_consen 74 LSLILAIPLAFLWGILFACLSFLHIWCVM 102 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777888888889998764
No 16
>KOG2729|consensus
Probab=50.99 E-value=41 Score=26.31 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=13.3
Q ss_pred CccCCcccchHhHHHHhh
Q psy8715 59 KFVYPYNLGWKKNIHLVF 76 (164)
Q Consensus 59 ~~~~PYDlG~~~Nl~~Vf 76 (164)
+++||+|...+-| +-|+
T Consensus 37 DyiNPid~c~rlN-~lVl 53 (137)
T KOG2729|consen 37 DYINPIDLCSRLN-RLVL 53 (137)
T ss_pred ccCCHHHHHHHHh-HHHh
Confidence 5899999998888 4444
No 17
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=50.64 E-value=41 Score=24.15 Aligned_cols=33 Identities=27% Similarity=0.278 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhHhhhhhhh
Q psy8715 20 GVVIAVGMLFYFQVKAILKNQTNIEDWIVEKATK 53 (164)
Q Consensus 20 ~v~iavg~Ll~~hi~lIl~NqTTIE~~~~~k~~~ 53 (164)
.+.+++.+++..|+|.+ +.+++..+.-.++++.
T Consensus 30 ~LilfviF~~~L~~yy~-kteS~~~dL~t~k~K~ 62 (83)
T PF05814_consen 30 LLILFVIFFCVLQVYYI-KTESTPQDLQTEKAKS 62 (83)
T ss_pred HHHHHHHHHHHHHHHHc-CCCCcHHHHhhhhhhh
Confidence 34555666777899877 8888888877666653
No 18
>PF11779 DUF3317: Protein of unknown function (DUF3317); InterPro: IPR024512 Serine palmitoyltransferase (SPT) catalyzes the first committed step in sphingolipid biosynthesis. In mammals, two small subunits of serine palmitoyltransferase, ssSPTa and ssSPTb, substantially enhance the activity of SPT, conferring full enzyme activity upon it []. The 2 ssSPT isoforms share a conserved hydrophobic central domain, which is predicted to reside in the membrane. This entry represents the small subunits of serine palmitoyltransferase. It also includes a number of putative uncharacterised proteins from fungi and plants.
Probab=49.95 E-value=44 Score=21.97 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=21.0
Q ss_pred CCcchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8715 3 LSPGKRL-FHWGPLLAIVGVVIAVGMLFYFQVKAIL 37 (164)
Q Consensus 3 ~~~~~~~-~~if~~vL~i~v~iavg~Ll~~hi~lIl 37 (164)
|+|++++ +.++.+++...++.++...+=-|+..++
T Consensus 22 lepwEk~~fn~~~~~l~~l~~~~~~~ylP~h~~~~~ 57 (58)
T PF11779_consen 22 LEPWEKFLFNSFLLLLLSLILYATYLYLPSHIRFII 57 (58)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 6788863 3344445555555566666667777654
No 19
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=48.27 E-value=65 Score=22.77 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhcCcchhhhHhhhhhhhh
Q psy8715 16 LAIVGVVIAVGMLFYFQVK-AILKNQTNIEDWIVEKATKR 54 (164)
Q Consensus 16 vL~i~v~iavg~Ll~~hi~-lIl~NqTTIE~~~~~k~~~r 54 (164)
+++.+++++.+....++.. .-..+++|-|..+.++..+.
T Consensus 57 ~l~~~~~~~~~~~~~~~~~~~W~~~r~tae~lk~e~~~~~ 96 (112)
T PF14015_consen 57 ILSALAAILASLAAFFRFHERWIRYRATAESLKREKWLYL 96 (112)
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433 35778889998887777654
No 20
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=42.77 E-value=21 Score=18.98 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=11.0
Q ss_pred ccCCCEEEEeeee
Q psy8715 149 LQVNETVLVTRFR 161 (164)
Q Consensus 149 ~~~gd~~~vtr~~ 161 (164)
+++||.|+|+.+.
T Consensus 2 ~~~G~~V~I~~G~ 14 (28)
T smart00739 2 FEVGDTVRVIAGP 14 (28)
T ss_pred CCCCCEEEEeECC
Confidence 5799999999864
No 21
>PF03311 Cornichon: Cornichon protein; InterPro: IPR003377 The drosophila cornichon protein (gene: cni) [] is required in the germline for dorsal-ventral signalling. The dorsal-ventral pattern formation involves a reorganisation of the microtubule network correlated with the movement of the oocyte nucleus, and depending on the initial correct establishment of the anterior-posterior axis via a signal from the oocyte produced by cornichon and gurken and received by torpedo protein in the follicle cells. The biochemical function of the cornichon protein is currently not known. It is a protein of 144 residues that seems to contain three transmembrane regions. ; GO: 0035556 intracellular signal transduction, 0016020 membrane
Probab=41.03 E-value=51 Score=25.00 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHhhhhhhhhhcCCCccCCcccchHhH
Q psy8715 14 PLLAIVGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKATKRKRQDKFVYPYNLGWKKN 71 (164)
Q Consensus 14 ~~vL~i~v~iavg~Ll~~hi~lIl~NqTTIE~~~~~k~~~rr~~~~~~~PYDlG~~~N 71 (164)
.+++++.+..++.++..+|+-.+. ..| .++.||+|.--+-|
T Consensus 8 ~~i~alll~~~ll~~~vy~ii~l~----DLe-------------~D~iNp~d~c~~lN 48 (128)
T PF03311_consen 8 LWILALLLTAALLFIVVYFIICLS----DLE-------------CDYINPIDLCSRLN 48 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHH-------------hccCCHHHHHHHHH
Confidence 466666666666666777766532 222 25789999866655
No 22
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=39.82 E-value=23 Score=25.38 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=20.4
Q ss_pred CCeEEeeccCce-EeeecccceeecccCCCCcCcccccCCCEEEEeee
Q psy8715 114 QPVLVVKNYNGR-CLPLMFGLKVSWHTPCFDIARINLQVNETVLVTRF 160 (164)
Q Consensus 114 ~~~~~~~~~~g~-~~~~~~g~~~~~~~P~~de~ri~~~~gd~~~vtr~ 160 (164)
..|++.+-+.|. |-| . .++|+. +|-+.+++||.|..--+
T Consensus 12 ~~y~I~~I~~gd~~~~-~------~~sPL~-~pGv~v~~GD~I~aInG 51 (88)
T PF14685_consen 12 GGYRIARIYPGDPWNP-N------ARSPLA-QPGVDVREGDYILAING 51 (88)
T ss_dssp TEEEEEEE-BS-TTSS-S-------B-GGG-GGS----TT-EEEEETT
T ss_pred CEEEEEEEeCCCCCCc-c------ccCCcc-CCCCCCCCCCEEEEECC
Confidence 447777777775 555 2 267875 59999999999986433
No 23
>KOG2417|consensus
Probab=39.00 E-value=32 Score=31.31 Aligned_cols=72 Identities=21% Similarity=0.316 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhHhhhhhhhhhcCCCccCCcccchHhHHHHhhCcccCCCCceecccCCcccc
Q psy8715 17 AIVGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKATKRKRQDKFVYPYNLGWKKNIHLVFGSSSISNGITWPVVEGCHQY 96 (164)
Q Consensus 17 L~i~v~iavg~Ll~~hi~lIl~NqTTIE~~~~~k~~~rr~~~~~~~PYDlG~~~Nl~~VfGW~p~gDGi~wpv~~~c~qy 96 (164)
+++.+++.+.++-+||.|++++|.- +-. +...|+..+.|--+.-.| | .=|-.||.-+.-+-.
T Consensus 81 l~~ill~lv~~ip~Y~~y~ii~~i~-v~~-------------k~~~~~s~l~w~~FlYff-W---kiGdpFPmlSakhGi 142 (462)
T KOG2417|consen 81 LSLILLTLVFMIPYYHCYLIIRNIG-VRR-------------KLALPFTILFWFIFLYFF-W---KIGDPFPMLSAKHGI 142 (462)
T ss_pred HHHHHHHHHHHHHHHhheeeeeccc-chH-------------HHHhHHHHHHHHHHHHHH-H---HhCCCCCCCCcccce
Confidence 4444555566677888888888765 221 123456666555554433 5 111223332211111
Q ss_pred ccchHHHHHHH
Q psy8715 97 SLTMEQLEQKN 107 (164)
Q Consensus 97 ~lt~eql~qk~ 107 (164)
+|+||+-.+-
T Consensus 143 -ftieQliSRv 152 (462)
T KOG2417|consen 143 -FTIEQLISRV 152 (462)
T ss_pred -eeHHHHHhhh
Confidence 7799987653
No 24
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=35.90 E-value=38 Score=21.24 Aligned_cols=13 Identities=8% Similarity=0.258 Sum_probs=10.1
Q ss_pred ccccCCCEEEEee
Q psy8715 147 INLQVNETVLVTR 159 (164)
Q Consensus 147 i~~~~gd~~~vtr 159 (164)
|.+++||+|.|.+
T Consensus 16 Ls~~~Gd~i~v~~ 28 (55)
T PF07653_consen 16 LSFKKGDVIEVLG 28 (55)
T ss_dssp -EB-TTEEEEEEE
T ss_pred eEEecCCEEEEEE
Confidence 9999999999983
No 25
>PF09879 DUF2106: Predicted membrane protein (DUF2106); InterPro: IPR011313 [NiFe] hydrogenases function in H2 metabolism in a variety of microorganisms, enabling them to use H2 as a source of reducing equivalent under aerobic and anaerobic conditions [NiFe] hydrogenases consist of two subunits, hydrogenase large and hydrogenase small. The large subunit contains the binuclear [NiFe] active site, while the small subunit binds at least one [4Fe-4S] cluster []. Energy-converting [NiFe] hydrogenases (or [NiFe]-hydrogenase-3-type) form a distinct group within the [NiFe] hydrogenase family [, ]. Members of this subgroup include: Hydrogenase 3 and 4 (Hyc and Hyf) from Escherichia coli CO-induced hydrogenase (Coo) from Rhodospirillum rubrum Mbh hydrogenase from Pyrococcus furiosus Eha and Ehb hydrogenases from Methanothermobacter species Ech hydrogenase from Methanosarcina barkeri Energy-converting [NiFe] hydrogenases are membrane-bound enzymes with a six-subunit core: the large and small hydrogenase subunits, plus two hydrophilic proteins and two integral membrane proteins. Their large and small subunits show little sequence similarity to other [NiFe] hydrogenases, except for key conserved residues coordinating the active site and [FeS] cluster. However, they show considerable sequence similarity to the six-subunit, energy-conserving NADH:quinone oxidoreductases (complex I), which are present in cytoplasmic membranes of many bacteria and in inner mitochondrial membranes. However, the reactions they catalyse differ significantly from complex I. Energy-converting [NiFe] hydrogenases function as ion pumps. Eha and Ehb hydrogenases contain extra subunits in addition to those shared by other energy-converting [NiFe] hydrogenases (or [NiFe]-hydrogenase-3-type). Eha contains a 6[4Fe-4S] polyferredoxin, a 10[4F-4S] polyferredoxin, ten other predicted integral membrane proteins (EhaA IPR011306 from INTERPRO, EhaB IPR011314 from INTERPRO, EhaC IPR011316 from INTERPRO, EhaD IPR011308 from INTERPRO, EhaE IPR011317 from INTERPRO, EhaF IPR011313 from INTERPRO, EhaG IPR011311 from INTERPRO, EhaI IPR011318 from INTERPRO, EhaK IPR011319 from INTERPRO, EhaL IPR011305 from INTERPRO) and four hydrophobic subunits (EhaM, EhaR IPR014502 from INTERPRO, EhS, EhT) []. The ten predicted integral membrane proteins are absent from Ech, Coo, Hyc and Hyf complexes, which may have simpler membrane components than Eha. Eha and Ehb catalyse the reduction of low-potential redox carriers (e.g. ferredoxins or polyferredoxins), which then might function as electron donors to oxidoreductases. Based on sequence similarity and genome context analysis, other organisms such as Methanopyrus kandleri, Methanocaldococcus jannaschii, and Methanothermobacter marburgensis also encode Eha-like [NiFe]-hydrogenase-3-type complexes and have very similar eha operon structure. This entry represents small membrane proteins that are predicted to be the EhaF transmembrane subunits of multi-subunit membrane-bound [NiFe]-hydrogenase Eha complexes.
Probab=35.37 E-value=27 Score=27.64 Aligned_cols=10 Identities=30% Similarity=0.614 Sum_probs=7.8
Q ss_pred CCccCCcccc
Q psy8715 58 DKFVYPYNLG 67 (164)
Q Consensus 58 ~~~~~PYDlG 67 (164)
+.-.+|||+|
T Consensus 56 ~~pLaPYDRG 65 (153)
T PF09879_consen 56 KSPLAPYDRG 65 (153)
T ss_pred CCCCCcccCC
Confidence 3457899998
No 26
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=34.38 E-value=30 Score=24.52 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=13.3
Q ss_pred ccccCCCEEEEeeee
Q psy8715 147 INLQVNETVLVTRFR 161 (164)
Q Consensus 147 i~~~~gd~~~vtr~~ 161 (164)
+.+++||+|.+||..
T Consensus 50 ~g~k~GdVvkI~R~S 64 (79)
T PRK09570 50 IGAKPGDVIKIVRKS 64 (79)
T ss_pred cCCCCCCEEEEEECC
Confidence 689999999999964
No 27
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=34.28 E-value=1.3e+02 Score=19.34 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8715 10 FHWGPLLAIVGVVIAVGMLFYFQVKAI 36 (164)
Q Consensus 10 ~~if~~vL~i~v~iavg~Ll~~hi~lI 36 (164)
..+|+.++.++++.-+|++.+--+..|
T Consensus 6 t~iFsvvIil~If~~iGl~IyQkikqI 32 (49)
T PF11044_consen 6 TTIFSVVIILGIFAWIGLSIYQKIKQI 32 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666655555544
No 28
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=34.01 E-value=1.1e+02 Score=22.04 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Q psy8715 16 LAIVGVVIAVGMLFYFQVKAILKNQTNIED 45 (164)
Q Consensus 16 vL~i~v~iavg~Ll~~hi~lIl~NqTTIE~ 45 (164)
+++..+++.+..+|+.=++.|.+|.-..|.
T Consensus 39 Vic~~lVfVii~lFi~ll~~i~~~~e~~~~ 68 (84)
T PF06143_consen 39 VICCFLVFVIIVLFILLLYNINKNAEQDRA 68 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 444444444555555555556655544433
No 29
>TIGR03064 sortase_srtB sortase, SrtB family. Members of this transpeptidase family are, in most cases, designated sortase B, product of the srtB gene. This protein shows only distant similarity to the sortase A family, for which there may be several members in a single bacterial genome. Typical SrtB substrate motifs include NAKTN, NPKSS, etc, and otherwise resemble the LPXTG sorting signals recognized by sortase A proteins.
Probab=33.07 E-value=1.1e+02 Score=25.52 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=16.3
Q ss_pred HhhCc-ccCCCCceecccCCcc
Q psy8715 74 LVFGS-SSISNGITWPVVEGCH 94 (164)
Q Consensus 74 ~VfGW-~p~gDGi~wpv~~~c~ 94 (164)
++.|| .-+|-.+.+||..+-+
T Consensus 68 D~vgWi~ipgT~IdyPVvq~~d 89 (232)
T TIGR03064 68 DIVGWITVPGTHIDYPVVQGKD 89 (232)
T ss_pred CEEEEEEECCcccccCeeeCCC
Confidence 47789 7788899999876643
No 30
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=32.35 E-value=34 Score=23.91 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=11.4
Q ss_pred ccccCCCEEEEeeee
Q psy8715 147 INLQVNETVLVTRFR 161 (164)
Q Consensus 147 i~~~~gd~~~vtr~~ 161 (164)
+.+++||.|.++|-.
T Consensus 47 ~g~k~GdVvkI~R~S 61 (74)
T PF01191_consen 47 LGAKPGDVVKIIRKS 61 (74)
T ss_dssp TT--TTSEEEEEEEE
T ss_pred cCCCCCCEEEEEecC
Confidence 578999999999964
No 31
>PF14851 FAM176: FAM176 family
Probab=32.34 E-value=67 Score=25.45 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy8715 7 KRLFHWGPLLAIVGVVIAVGML 28 (164)
Q Consensus 7 ~~~~~if~~vL~i~v~iavg~L 28 (164)
+++.+.|..++++++++.+++|
T Consensus 20 E~~aLYFv~gVC~GLlLtLcll 41 (153)
T PF14851_consen 20 ERFALYFVSGVCAGLLLTLCLL 41 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888777666
No 32
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=30.67 E-value=65 Score=21.76 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8715 11 HWGPLLAIVGVVIAVGMLFYFQ 32 (164)
Q Consensus 11 ~if~~vL~i~v~iavg~Ll~~h 32 (164)
+++.+++..++...+|.|+.+|
T Consensus 38 ~v~~~~~~c~~S~~lG~~~~~~ 59 (60)
T PF06072_consen 38 IVFAVVALCVLSGGLGALVAWH 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 3444444555566666666655
No 33
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=30.32 E-value=51 Score=20.45 Aligned_cols=15 Identities=7% Similarity=0.224 Sum_probs=11.0
Q ss_pred cccccCCCEEEEeee
Q psy8715 146 RINLQVNETVLVTRF 160 (164)
Q Consensus 146 ri~~~~gd~~~vtr~ 160 (164)
-+.+++||+|.|.+.
T Consensus 12 ELs~~~Gd~i~v~~~ 26 (49)
T PF14604_consen 12 ELSFKKGDVITVLEK 26 (49)
T ss_dssp B-EB-TTEEEEEEEE
T ss_pred EeeEcCCCEEEEEEe
Confidence 399999999999854
No 34
>COG3477 Predicted periplasmic/secreted protein [Function unknown]
Probab=29.92 E-value=1.5e+02 Score=24.07 Aligned_cols=15 Identities=20% Similarity=0.596 Sum_probs=13.2
Q ss_pred CcccchHhHHHHhhC
Q psy8715 63 PYNLGWKKNIHLVFG 77 (164)
Q Consensus 63 PYDlG~~~Nl~~VfG 77 (164)
++|+-+.+|+.|+||
T Consensus 133 lw~~p~~Eh~SEifG 147 (176)
T COG3477 133 LWDLPFYEHLSEIFG 147 (176)
T ss_pred cccCcHHHHHHHHHH
Confidence 577778899999999
No 35
>PRK14725 pyruvate kinase; Provisional
Probab=29.88 E-value=62 Score=31.07 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=34.7
Q ss_pred HHhhhcCCCeEEeeccCceEee-ecc------cceeecc---------cCCCCcCcccccCCCEEEEeee
Q psy8715 107 NIKKAHSQPVLVVKNYNGRCLP-LMF------GLKVSWH---------TPCFDIARINLQVNETVLVTRF 160 (164)
Q Consensus 107 ~~kr~r~~~~~~~~~~~g~~~~-~~~------g~~~~~~---------~P~~de~ri~~~~gd~~~vtr~ 160 (164)
.|.|.+.|.++|++...+.++- .++ |..+... .|-. |..|.|++||.+.+|+.
T Consensus 278 ~DaRg~~R~l~V~~~~~~~~~~~~~~~~Y~~~G~~l~~~~~~~~~v~~~p~~-~~~i~L~~Gd~l~lt~~ 346 (608)
T PRK14725 278 TDARGKKRKLTVTEVDDEGVLAEGSQTAYLANGTLLRLGRHDSTRVGGLPPV-EQKLRLKVGDRLVLTRD 346 (608)
T ss_pred eeccccceeeeEEeecCceeEEeecceeeeccCceeeecccccccccccccc-CcceEecCCCEEEEecC
Confidence 3667889999998877765543 222 3222222 2322 34699999999999986
No 36
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=29.78 E-value=23 Score=27.94 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=13.7
Q ss_pred cccccCCCEEEEeeeecc
Q psy8715 146 RINLQVNETVLVTRFRNE 163 (164)
Q Consensus 146 ri~~~~gd~~~vtr~~~~ 163 (164)
||.+++||+|.|=.+..|
T Consensus 116 ri~~e~GDli~vP~g~~H 133 (157)
T PF03079_consen 116 RILCEKGDLIVVPAGTYH 133 (157)
T ss_dssp EEEEETTCEEEE-TT--E
T ss_pred EEEEcCCCEEecCCCCce
Confidence 789999999999888877
No 37
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=29.58 E-value=1.1e+02 Score=25.50 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=19.8
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8715 2 CLSPGKRLFHWGPLLAIVGVVIAVGMLFYFQVK 34 (164)
Q Consensus 2 ~~~~~~~~~~if~~vL~i~v~iavg~Ll~~hi~ 34 (164)
|-+|..+...-..+.+.+.+++.+...+.||.+
T Consensus 108 ~CNpl~R~~~SivfTi~fy~~~~V~iyLv~~ff 140 (214)
T PF06837_consen 108 CCNPLIRGIFSIVFTILFYTLLFVSIYLVYFFF 140 (214)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567776544444444556666667777666654
No 38
>PHA03048 IMV membrane protein; Provisional
Probab=29.49 E-value=73 Score=23.27 Aligned_cols=37 Identities=8% Similarity=0.045 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Q psy8715 8 RLFHWGPLLAIVGVVIAVGMLFYFQVKAILKNQTNIED 45 (164)
Q Consensus 8 ~~~~if~~vL~i~v~iavg~Ll~~hi~lIl~NqTTIE~ 45 (164)
+.+.+++|++++.+.+.+..+..|--|-- -|.+.+|.
T Consensus 44 Ralsii~FIlgivl~lG~~ifsmy~r~C~-~~~~~~~~ 80 (93)
T PHA03048 44 RALSGIAFVLGIVMTIGMLIYSMWGRYCT-PSKVVIDN 80 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCcccCcc
Confidence 56677788887776665554444443322 34434443
No 39
>KOG1226|consensus
Probab=29.44 E-value=59 Score=32.05 Aligned_cols=48 Identities=13% Similarity=0.268 Sum_probs=35.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHhhhhhh
Q psy8715 5 PGKRLFHWGPLLAIVGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKAT 52 (164)
Q Consensus 5 ~~~~~~~if~~vL~i~v~iavg~Ll~~hi~lIl~NqTTIE~~~~~k~~ 52 (164)
|+..++.++..+++.++++.+++|++|-+...+.++--.=.++.++.+
T Consensus 709 ~~~~~~~i~lgvv~~ivligl~llliwkll~~~~DrrE~akFe~er~~ 756 (783)
T KOG1226|consen 709 PGPNILAIVLGVVAGIVLIGLALLLIWKLLTTIHDRREFAKFEKERLN 756 (783)
T ss_pred CCCcEeeehHHHHHHHHHHHHHHHHHHHHhheecccHHhhhhhHHHHh
Confidence 344566777778888899999999999977777777665556655554
No 40
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=29.37 E-value=93 Score=19.09 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy8715 8 RLFHWGPLLAIVGVVIAVGML 28 (164)
Q Consensus 8 ~~~~if~~vL~i~v~iavg~L 28 (164)
+-+++|++++.+.+.+.++..
T Consensus 14 r~Wi~F~l~mi~vFi~li~yt 34 (38)
T PF09125_consen 14 RGWIAFALAMILVFIALIGYT 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 456666666555444444433
No 41
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=29.26 E-value=1e+02 Score=22.54 Aligned_cols=28 Identities=4% Similarity=0.008 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8715 8 RLFHWGPLLAIVGVVIAVGMLFYFQVKA 35 (164)
Q Consensus 8 ~~~~if~~vL~i~v~iavg~Ll~~hi~l 35 (164)
+.+.+++|++++.+.+.+..+..|--|-
T Consensus 45 RalSii~FI~giil~lG~~i~s~ygr~C 72 (92)
T PF05767_consen 45 RALSIICFILGIILTLGIVIFSMYGRYC 72 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5677788888887776665555554443
No 42
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=28.81 E-value=31 Score=19.68 Aligned_cols=11 Identities=36% Similarity=0.208 Sum_probs=9.3
Q ss_pred CCCEEEEeeee
Q psy8715 151 VNETVLVTRFR 161 (164)
Q Consensus 151 ~gd~~~vtr~~ 161 (164)
+||.|+|+++.
T Consensus 1 ~Gd~V~V~~G~ 11 (32)
T PF00467_consen 1 VGDTVKVISGP 11 (32)
T ss_dssp TTSEEEESSST
T ss_pred CCCEEEEeEcC
Confidence 69999999875
No 43
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=28.39 E-value=1.5e+02 Score=20.93 Aligned_cols=25 Identities=8% Similarity=0.576 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhHhh
Q psy8715 20 GVVIAVGMLFYFQVKAILKNQTNIEDWIV 48 (164)
Q Consensus 20 ~v~iavg~Ll~~hi~lIl~NqTTIE~~~~ 48 (164)
++++++.+++++|+|.+. -.|.|..
T Consensus 32 ~l~~~l~~~l~wh~~~l~----rL~~WL~ 56 (90)
T PF11808_consen 32 ALLLGLLLYLFWHLYQLY----RLERWLR 56 (90)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHh
Confidence 344455566777777554 4666643
No 44
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=28.10 E-value=2e+02 Score=19.76 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=8.7
Q ss_pred CCCcchhHHHHHHHHHHH
Q psy8715 2 CLSPGKRLFHWGPLLAIV 19 (164)
Q Consensus 2 ~~~~~~~~~~if~~vL~i 19 (164)
||.|+.. .++|+++-++
T Consensus 8 Cl~pf~v-Ylif~fv~c~ 24 (67)
T PF03376_consen 8 CLPPFAV-YLIFAFVTCT 24 (67)
T ss_pred ccchHHH-HHHHHHHHHH
Confidence 7777653 3444444333
No 45
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=27.97 E-value=1.6e+02 Score=21.24 Aligned_cols=36 Identities=28% Similarity=0.274 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC----cchhhhHhhhhh
Q psy8715 16 LAIVGVVIAVGMLFYFQVKAILKN----QTNIEDWIVEKA 51 (164)
Q Consensus 16 vL~i~v~iavg~Ll~~hi~lIl~N----qTTIE~~~~~k~ 51 (164)
+..+++++++++.++|++.-+-+= ++.+|....+++
T Consensus 8 ~~~~~v~~~i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek~ 47 (87)
T PF10883_consen 8 GGVGAVVALILAYLWWKVKKAKKQNAKLQKENEQLKTEKA 47 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777788888876665 566666655544
No 46
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=27.48 E-value=60 Score=19.13 Aligned_cols=18 Identities=11% Similarity=0.209 Sum_probs=14.0
Q ss_pred CcCcccccCCCEEEEeee
Q psy8715 143 DIARINLQVNETVLVTRF 160 (164)
Q Consensus 143 de~ri~~~~gd~~~vtr~ 160 (164)
++..+.+++||.|.|...
T Consensus 15 ~~~~l~~~~Gd~v~v~~~ 32 (58)
T smart00326 15 DPDELSFKKGDIITVLEK 32 (58)
T ss_pred CCCCCCCCCCCEEEEEEc
Confidence 344589999999998754
No 47
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=27.06 E-value=1.4e+02 Score=20.91 Aligned_cols=29 Identities=24% Similarity=0.117 Sum_probs=19.3
Q ss_pred cccceeecccCCCCcC-cccccCCCEEEEe
Q psy8715 130 MFGLKVSWHTPCFDIA-RINLQVNETVLVT 158 (164)
Q Consensus 130 ~~g~~~~~~~P~~de~-ri~~~~gd~~~vt 158 (164)
+-|..+.-+.|=---- +|.+.|||.|.|.
T Consensus 27 edg~~~~ahI~GKmr~~~i~I~~GD~V~Ve 56 (75)
T COG0361 27 ENGHERLAHISGKMRKNRIRILPGDVVLVE 56 (75)
T ss_pred cCCcEEEEEccCcchheeEEeCCCCEEEEE
Confidence 5555555555532233 8999999999984
No 48
>PF14250 AbrB-like: AbrB-like transcriptional regulator
Probab=26.86 E-value=67 Score=22.40 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=33.9
Q ss_pred HhhhcCCCeEEeeccCceEeeecccceeecccCCCCcCcccccCCCEEEEeeeecc
Q psy8715 108 IKKAHSQPVLVVKNYNGRCLPLMFGLKVSWHTPCFDIARINLQVNETVLVTRFRNE 163 (164)
Q Consensus 108 ~kr~r~~~~~~~~~~~g~~~~~~~g~~~~~~~P~~de~ri~~~~gd~~~vtr~~~~ 163 (164)
.++.|...|++.=.-+|.-+- ..-.|. .+-|+|||.-.+.=++||
T Consensus 23 ~~~GR~~syr~~Vq~NGnLLI---------G~AYT~--~m~L~PGdEFeI~LgrKh 67 (71)
T PF14250_consen 23 GRRGRKASYRVSVQGNGNLLI---------GSAYTK--QMGLKPGDEFEIKLGRKH 67 (71)
T ss_pred CCCCcCceEEEEEecCCCEEE---------cHHHHH--HhCCCCCCEEEEEeCcce
Confidence 567788888876666665443 445665 599999999999999988
No 49
>COG2063 FlgH Flagellar basal body L-ring protein [Cell motility and secretion]
Probab=26.56 E-value=47 Score=28.06 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=20.4
Q ss_pred ecccceeecccCCCCcCcccccCCCEEEEe
Q psy8715 129 LMFGLKVSWHTPCFDIARINLQVNETVLVT 158 (164)
Q Consensus 129 ~~~g~~~~~~~P~~de~ri~~~~gd~~~vt 158 (164)
+..| ..|+++|+| +..+||+|.|+
T Consensus 58 ~~~~-----~~~Lf~D~R-A~~vGDilTV~ 81 (230)
T COG2063 58 WNYG-----YQPLFEDRR-ASNVGDILTIV 81 (230)
T ss_pred cCcc-----cchhhcccc-cccCCCEEEEE
Confidence 4777 789999876 89999999986
No 50
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=26.27 E-value=46 Score=22.86 Aligned_cols=14 Identities=21% Similarity=0.214 Sum_probs=12.6
Q ss_pred CcccccCCCEEEEe
Q psy8715 145 ARINLQVNETVLVT 158 (164)
Q Consensus 145 ~ri~~~~gd~~~vt 158 (164)
.||.+.+||.|.|.
T Consensus 41 ~rI~I~~GD~V~Ve 54 (68)
T TIGR00008 41 HYIRILPGDKVKVE 54 (68)
T ss_pred ccEEECCCCEEEEE
Confidence 58999999999985
No 51
>PF01505 Vault: Major Vault Protein repeat; InterPro: IPR002499 Vaults are the largest ribonucleoprotein particles known, having a mass of approximately 13 MDa. They are multi-subunit structures that may act as scaffolds for proteins involved in signal transduction and may also play a role in nucleo-cytoplasmic transport. Vaults are present in most normal tissues, but are more highly expressed in epithelial cells with secretory and excretory functions, as well as in cells chronically exposed to xenobiotics, such as bronchial cells and cells lining the intestine []. Overexpression of these proteins is linked with multidrug-resistance in cancer cells. The mammalian vault structure is highly regular and consists of approximately 96 molecules of the 100 kDa major vault protein (MVP), 2 molecules of the 240 kDa minor vault protein TEP1, 8 molecules of the 193 kDa minor vault protein VPARP and at least 6 copies of a small untranslated RNA of 88-141 bases. The MVP molecules form the core of the complex, which is a barrel-like structure with an invaginated waist and two protruding caps. The complex can unfold into two symmetrical flower-like structures with 8 petals each supposedly consisting of 6 MVP molecules []. The MVP protein is composed of two distinct domains []. The N-terminal domain contains ~8 copies of the vault repeat (or MVP repeat) in tandem. The MVP repeat is composed of ~53 amino acids and forms a structural part of the vault wall. The C-terminal part of MVP may be involved in oligomerization and be located in the vault cap, while the MVP repeats in the N-terminal part can be packed like staves in a barrel to form the vault wall. The 3D structure of the repeat forms a fold that consists of a three stranded (B) antiparallel beta-sheet in a unique topology B2-B1-B3 and two loops. MVP repeats can be interaction-mediating modules, as MVP repeats 3 and 4 bind VPARP, which is one of the other vault proteins.; PDB: 3GF5_A 3GNG_A 3GNF_B 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y 1Y7X_A.
Probab=25.45 E-value=57 Score=20.00 Aligned_cols=29 Identities=21% Similarity=0.086 Sum_probs=23.2
Q ss_pred cccceeecccCCCCcCcccccCCCEEEEe
Q psy8715 130 MFGLKVSWHTPCFDIARINLQVNETVLVT 158 (164)
Q Consensus 130 ~~g~~~~~~~P~~de~ri~~~~gd~~~vt 158 (164)
..++.+..-.+++|+--..-++||.++|+
T Consensus 7 ~~al~l~A~~~f~D~~g~~R~~Ge~WLv~ 35 (43)
T PF01505_consen 7 NEALHLRALRDFTDSDGVKRKAGEEWLVT 35 (43)
T ss_dssp TEEEEEEESSSEESTTSSEECTTEEEEEE
T ss_pred CCcEEEEEeecEECCCCCEEeCCCEEEEe
Confidence 45566766778889777889999999996
No 52
>PF10260 SAYSvFN: Uncharacterized conserved domain (SAYSvFN); InterPro: IPR019387 This domain of approximately 75 residues contains a highly conserved SATSv/iFN motif. The function is unknown but the domain is conserved from plants to humans.
Probab=24.76 E-value=1.8e+02 Score=20.10 Aligned_cols=48 Identities=23% Similarity=0.318 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCcchhhhHhhhhhhhhhcCCCccCCcccchHhHHHHhhCcccCCCCceecccCCccccccchHHHHHH
Q psy8715 27 MLFYFQVKAILKNQTNIEDWIVEKATKRKRQDKFVYPYNLGWKKNIHLVFGSSSISNGITWPVVEGCHQYSLTMEQLEQK 106 (164)
Q Consensus 27 ~Ll~~hi~lIl~NqTTIE~~~~~k~~~rr~~~~~~~PYDlG~~~Nl~~VfGW~p~gDGi~wpv~~~c~qy~lt~eql~qk 106 (164)
.+.+-=+++|..|--+ +. + +.-...|+. .-+|++...| +|+.||+...
T Consensus 22 f~i~s~f~~I~~Nl~~-~r---------~--~ge~SAYSV-FN~~~~~i~G-------------------tl~aE~~ere 69 (71)
T PF10260_consen 22 FFILSGFYLIFTNLGT-PR---------K--PGELSAYSV-FNKGCERIPG-------------------TLTAEQFERE 69 (71)
T ss_pred HHHHHHHHHHHHcCCC-CC---------C--CCCccchhh-hCCCccccCC-------------------CCCHHHHHHh
Confidence 3334445556667665 22 1 112445654 3468888887 6888887643
No 53
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=24.09 E-value=57 Score=23.25 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=13.5
Q ss_pred cccccCCCEEEEeeee
Q psy8715 146 RINLQVNETVLVTRFR 161 (164)
Q Consensus 146 ri~~~~gd~~~vtr~~ 161 (164)
-+.+.+||+|.++|-.
T Consensus 52 ~lgak~GdvVkIvRkS 67 (80)
T COG2012 52 ALGAKPGDVVKIVRKS 67 (80)
T ss_pred HccCCCCcEEEEEecC
Confidence 3778999999999964
No 54
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=24.08 E-value=87 Score=21.53 Aligned_cols=15 Identities=7% Similarity=0.193 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy8715 11 HWGPLLAIVGVVIAV 25 (164)
Q Consensus 11 ~if~~vL~i~v~iav 25 (164)
++++++|++++++++
T Consensus 3 IiiSIvLai~lLI~l 17 (66)
T PF07438_consen 3 IIISIVLAIALLISL 17 (66)
T ss_pred hhHHHHHHHHHHHHH
Confidence 445555555554444
No 55
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=23.83 E-value=86 Score=22.71 Aligned_cols=10 Identities=30% Similarity=0.109 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy8715 9 LFHWGPLLAI 18 (164)
Q Consensus 9 ~~~if~~vL~ 18 (164)
.++++.++|+
T Consensus 5 ~~llL~l~LA 14 (95)
T PF07172_consen 5 AFLLLGLLLA 14 (95)
T ss_pred HHHHHHHHHH
Confidence 3344433333
No 56
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=23.67 E-value=1.1e+02 Score=24.63 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8715 11 HWGPLLAIVGVVIAVGMLFYFQV 33 (164)
Q Consensus 11 ~if~~vL~i~v~iavg~Ll~~hi 33 (164)
+|+..++++++++++|.++....
T Consensus 2 ~ii~~i~~~~vG~~~G~~~~~~~ 24 (201)
T PF12072_consen 2 IIIIAIVALIVGIGIGYLVRKKI 24 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666664433
No 57
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=23.17 E-value=35 Score=21.65 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=18.3
Q ss_pred CCcCcccccCCCEEEEeeeecc
Q psy8715 142 FDIARINLQVNETVLVTRFRNE 163 (164)
Q Consensus 142 ~de~ri~~~~gd~~~vtr~~~~ 163 (164)
.|+-+..+++||.+.+-.+..|
T Consensus 34 ~~~~~~~l~~Gd~~~i~~~~~H 55 (71)
T PF07883_consen 34 VDGERVELKPGDAIYIPPGVPH 55 (71)
T ss_dssp ETTEEEEEETTEEEEEETTSEE
T ss_pred EccEEeEccCCEEEEECCCCeE
Confidence 4566899999999999887776
No 58
>COG1935 Uncharacterized conserved protein [Function unknown]
Probab=22.41 E-value=62 Score=24.77 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=13.6
Q ss_pred cCcccccCCCEEEEeee
Q psy8715 144 IARINLQVNETVLVTRF 160 (164)
Q Consensus 144 e~ri~~~~gd~~~vtr~ 160 (164)
+.-.+|++||.|.+|=-
T Consensus 34 ~tv~rl~~GDlVFlT~~ 50 (122)
T COG1935 34 LTVLRLHEGDLVFLTST 50 (122)
T ss_pred HHhhcCCCCCEEEEehh
Confidence 45688999999999843
No 59
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=22.41 E-value=63 Score=24.06 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=21.7
Q ss_pred ecccceeecccCCCCcCcccccCCCEEEEeee
Q psy8715 129 LMFGLKVSWHTPCFDIARINLQVNETVLVTRF 160 (164)
Q Consensus 129 ~~~g~~~~~~~P~~de~ri~~~~gd~~~vtr~ 160 (164)
|..|.|+. -.=+.|+.|-.+++||.|..+-+
T Consensus 13 I~~G~Kti-EiRlnD~kr~~ikvGD~I~f~~~ 43 (109)
T cd06555 13 IKSGKKTI-EIRLNDEKRQQIKVGDKILFNDL 43 (109)
T ss_pred HHcCCCEE-EEEecccchhcCCCCCEEEEEEc
Confidence 35555542 12267999999999999987653
No 60
>PF05683 Fumerase_C: Fumarase C-terminus; InterPro: IPR004647 This entry represents various Fe-S type hydro-lyases, including the beta subunit from both L-tartrate dehydratase (TtdB; EC:4.2.1.32) and class 2 fumarate hydratase (FumC; (4.2.1.2 from EC) []. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase (see IPR000362 from INTERPRO). Proteins in this group represent a subset of closely related proteins or modules, including the Escherichia coli tartrate dehydratase beta chain and the C-terminal region of the class I fumarase (where the N-terminal region is homologous to the tartrate dehydratase alpha chain). The activity of the archaeal proteins in this group is unknown.; GO: 0016836 hydro-lyase activity; PDB: 2ISB_A.
Probab=22.35 E-value=39 Score=28.04 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=16.8
Q ss_pred cceeecccCCCCcCcccccCCCEEEEe
Q psy8715 132 GLKVSWHTPCFDIARINLQVNETVLVT 158 (164)
Q Consensus 132 g~~~~~~~P~~de~ri~~~~gd~~~vt 158 (164)
...+-+.+|.++|---+|++||.|..+
T Consensus 26 ~~~~~L~tPlt~e~i~~L~vGD~V~Ls 52 (205)
T PF05683_consen 26 AREIELTTPLTEEDIRKLKVGDTVYLS 52 (205)
T ss_dssp --EEEEESS--HHHHHH--TT-EEEEE
T ss_pred eEEEEcCCCCCHHHHhhCCCCCEEEEe
Confidence 355667999999887799999999876
No 61
>PTZ00241 40S ribosomal protein S11; Provisional
Probab=22.14 E-value=61 Score=25.93 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=16.1
Q ss_pred ccCCCCcCcccccCCCEEEEe
Q psy8715 138 HTPCFDIARINLQVNETVLVT 158 (164)
Q Consensus 138 ~~P~~de~ri~~~~gd~~~vt 158 (164)
..+.=|+|.+.+++||+|.+.
T Consensus 106 k~~aHd~~~~~~kvGD~V~I~ 126 (158)
T PTZ00241 106 NIPVHCSPCFDVKEGDIVVVG 126 (158)
T ss_pred cEEEeCCccCCCCCCCEEEEE
Confidence 344556678889999999874
No 62
>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.
Probab=22.06 E-value=63 Score=22.94 Aligned_cols=15 Identities=40% Similarity=0.758 Sum_probs=11.2
Q ss_pred cccccCCCEEEEeee
Q psy8715 146 RINLQVNETVLVTRF 160 (164)
Q Consensus 146 ri~~~~gd~~~vtr~ 160 (164)
+..+.+||.|.|+|.
T Consensus 47 ~~~i~~Gd~V~V~ra 61 (82)
T PF03120_consen 47 ELDIRIGDTVLVTRA 61 (82)
T ss_dssp HTT-BBT-EEEEEEE
T ss_pred HcCCCCCCEEEEEEC
Confidence 477899999999986
No 63
>KOG2384|consensus
Probab=21.96 E-value=47 Score=27.81 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=27.2
Q ss_pred HHHHhhCc----------------ccCCCCceecccCCccccccchHHHHHHHHh
Q psy8715 71 NIHLVFGS----------------SSISNGITWPVVEGCHQYSLTMEQLEQKNIK 109 (164)
Q Consensus 71 Nl~~VfGW----------------~p~gDGi~wpv~~~c~qy~lt~eql~qk~~k 109 (164)
|-+..||| -..|-|..|+-. |+...++.-||+||.-+
T Consensus 6 n~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv--~d~ssldaaqlaek~g~ 58 (223)
T KOG2384|consen 6 NARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGV--TDESSLDAAQLAEKGGA 58 (223)
T ss_pred cchhhhcchHHHHHhhhcchhHHHHHhccCcccccc--cccccchHHHHHHhcCh
Confidence 56677887 346778877743 57778889999998754
No 64
>PF10332 DUF2418: Protein of unknown function (DUF2418); InterPro: IPR018819 This entry represents the conserved 100 residue central region from a family of proteins found in fungi. It carries a characteristic EYD sequence motif. The function is not known.
Probab=21.83 E-value=3.2e+02 Score=19.84 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhHhhhh
Q psy8715 17 AIVGVVIAVGMLFYFQVKAILKNQTNIEDWIVEK 50 (164)
Q Consensus 17 L~i~v~iavg~Ll~~hi~lIl~NqTTIE~~~~~k 50 (164)
......+.+..++.++++++.. ..|..++++
T Consensus 38 ~~~~~~~~~~~l~s~~l~~li~---~f~~~ikD~ 68 (99)
T PF10332_consen 38 VTSFTTLFLMVLLSFQLYFLIS---RFEQLIKDK 68 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHH
Confidence 4445555666677777777664 555544443
No 65
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic. This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.
Probab=21.72 E-value=56 Score=24.61 Aligned_cols=27 Identities=11% Similarity=0.041 Sum_probs=19.2
Q ss_pred ecccCCCCcC-------cccccCCCEEEEeeeec
Q psy8715 136 SWHTPCFDIA-------RINLQVNETVLVTRFRN 162 (164)
Q Consensus 136 ~~~~P~~de~-------ri~~~~gd~~~vtr~~~ 162 (164)
.+++|..+|. .+.+..||.|.|++|..
T Consensus 22 ~~~a~ls~elr~~y~~r~~~IkkGD~V~Vi~Gk~ 55 (114)
T TIGR01080 22 LMSAPLSKELREKYGKRALPVRKGDKVRIMRGDF 55 (114)
T ss_pred eeecccCHHHHHHcCcccceeecCCEEEEecCCC
Confidence 3455555543 36789999999999863
No 66
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=21.43 E-value=43 Score=24.69 Aligned_cols=15 Identities=27% Similarity=0.306 Sum_probs=13.8
Q ss_pred cCcccccCCCEEEEe
Q psy8715 144 IARINLQVNETVLVT 158 (164)
Q Consensus 144 e~ri~~~~gd~~~vt 158 (164)
.|-|+++.||.|.|+
T Consensus 25 GPtI~v~~Gd~v~i~ 39 (117)
T PF07732_consen 25 GPTIRVREGDTVRIT 39 (117)
T ss_dssp EEEEEEETTEEEEEE
T ss_pred CCEEEEEcCCeeEEE
Confidence 688999999999987
No 67
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=21.35 E-value=1e+02 Score=19.98 Aligned_cols=17 Identities=12% Similarity=-0.011 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8715 17 AIVGVVIAVGMLFYFQV 33 (164)
Q Consensus 17 L~i~v~iavg~Ll~~hi 33 (164)
+++++++.+.+++..|+
T Consensus 7 V~i~iv~~lLg~~I~~~ 23 (50)
T PF12606_consen 7 VSIFIVMGLLGLSICTT 23 (50)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444555543
No 68
>PF15179 Myc_target_1: Myc target protein 1
Probab=21.25 E-value=1.2e+02 Score=24.93 Aligned_cols=22 Identities=9% Similarity=0.153 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8715 11 HWGPLLAIVGVVIAVGMLFYFQ 32 (164)
Q Consensus 11 ~if~~vL~i~v~iavg~Ll~~h 32 (164)
+|++|.+++++.+.+|+|.+.=
T Consensus 21 lIlaF~vSm~iGLviG~li~~L 42 (197)
T PF15179_consen 21 LILAFCVSMAIGLVIGALIWAL 42 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554433
No 69
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated
Probab=21.05 E-value=65 Score=24.56 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=14.7
Q ss_pred CcccccCCCEEEEeeee
Q psy8715 145 ARINLQVNETVLVTRFR 161 (164)
Q Consensus 145 ~ri~~~~gd~~~vtr~~ 161 (164)
..+.+..||.|.|.+|.
T Consensus 42 r~~~IkkGD~V~VisG~ 58 (120)
T PRK01191 42 RSLPVRKGDTVKVMRGD 58 (120)
T ss_pred ccceEeCCCEEEEeecC
Confidence 46789999999999885
No 70
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=20.75 E-value=61 Score=23.45 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=12.6
Q ss_pred cCcccccCCCEEEEe
Q psy8715 144 IARINLQVNETVLVT 158 (164)
Q Consensus 144 e~ri~~~~gd~~~vt 158 (164)
--+|++-+||.|.|-
T Consensus 42 ~~rIrIl~GD~V~VE 56 (87)
T PRK12442 42 KHRIRILAGDRVTLE 56 (87)
T ss_pred eeeEEecCCCEEEEE
Confidence 358999999999983
No 71
>PF15179 Myc_target_1: Myc target protein 1
Probab=20.66 E-value=1.6e+02 Score=24.25 Aligned_cols=30 Identities=27% Similarity=0.485 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8715 9 LFHWGPLLAIVGVVIAVGMLFYFQVKAILK 38 (164)
Q Consensus 9 ~~~if~~vL~i~v~iavg~Ll~~hi~lIl~ 38 (164)
-+-.--+++++.|.+++|+++.-=+|.+++
T Consensus 15 ~f~~~~lIlaF~vSm~iGLviG~li~~Llt 44 (197)
T PF15179_consen 15 NFDWEDLILAFCVSMAIGLVIGALIWALLT 44 (197)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456789999999999999999999874
No 72
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.63 E-value=1.9e+02 Score=20.22 Aligned_cols=19 Identities=5% Similarity=-0.043 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8715 11 HWGPLLAIVGVVIAVGMLF 29 (164)
Q Consensus 11 ~if~~vL~i~v~iavg~Ll 29 (164)
.++..++++.+.++.|+|+
T Consensus 6 ail~ivl~ll~G~~~G~fi 24 (71)
T COG3763 6 AILLIVLALLAGLIGGFFI 24 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666443
No 73
>PF12380 Peptidase_C62: Gill-associated viral 3C-like peptidase; InterPro: IPR024348 This protease is found in polyproteins from the positive-stranded RNA virus of prawns called yellow head virus or gill-associated virus (GAV). The GAV cysteine proteinase (3C-like proteinase) is predicted to be the key enzyme in the processing of the GAV replicase polyprotein precursors, polyprotein 1a and polyprotein 1ab. This protease employs a Cys(2968)-His(2879) catalytic dyad []. It is classified as family C62 in the MEROPS database.
Probab=20.51 E-value=42 Score=27.97 Aligned_cols=48 Identities=31% Similarity=0.512 Sum_probs=34.0
Q ss_pred cCcchhhhHhhhhhhhhhcCCCccCCcccchHhHHHHhhCc------ccCCCCceeccc--CCccccccc
Q psy8715 38 KNQTNIEDWIVEKATKRKRQDKFVYPYNLGWKKNIHLVFGS------SSISNGITWPVV--EGCHQYSLT 99 (164)
Q Consensus 38 ~NqTTIE~~~~~k~~~rr~~~~~~~PYDlG~~~Nl~~VfGW------~p~gDGi~wpv~--~~c~qy~lt 99 (164)
-|.|++|.. ..+|||. .++|+..|.|- -.+|.-++||.. +.|..-+||
T Consensus 13 gn~t~vedl-------------nkhpynk-yr~nivrvygergdlngflsgk~l~fprhifd~ctdntlt 68 (284)
T PF12380_consen 13 GNNTRVEDL-------------NKHPYNK-YRSNIVRVYGERGDLNGFLSGKFLHFPRHIFDSCTDNTLT 68 (284)
T ss_pred CCccchhhh-------------ccCchhh-hhhhheEeeccccccccccccceeccchhhhcccccccee
Confidence 377888872 3578987 68999999982 456777888853 557655554
No 74
>PHA03049 IMV membrane protein; Provisional
Probab=20.45 E-value=1.4e+02 Score=20.68 Aligned_cols=31 Identities=10% Similarity=0.092 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh
Q psy8715 15 LLAIVGVVIAVGMLFYFQVKA-ILKNQTNIED 45 (164)
Q Consensus 15 ~vL~i~v~iavg~Ll~~hi~l-Il~NqTTIE~ 45 (164)
-++.+++++++.+|..|-+|. ..++|++.++
T Consensus 4 d~~l~iICVaIi~lIvYgiYnkk~~~q~~~p~ 35 (68)
T PHA03049 4 DIILVIICVVIIGLIVYGIYNKKTTTSQNPPS 35 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCCCC
Confidence 345556777788888888887 4445555543
No 75
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=20.39 E-value=1.5e+02 Score=17.04 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8715 13 GPLLAIVGVVIAVGML 28 (164)
Q Consensus 13 f~~vL~i~v~iavg~L 28 (164)
|+.+|+++++++++.+
T Consensus 4 faWilG~~lA~~~~i~ 19 (28)
T PF08173_consen 4 FAWILGVLLACAFGIL 19 (28)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666666554
No 76
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=20.05 E-value=1.5e+02 Score=20.53 Aligned_cols=31 Identities=10% Similarity=0.103 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh
Q psy8715 15 LLAIVGVVIAVGMLFYFQVKA-ILKNQTNIED 45 (164)
Q Consensus 15 ~vL~i~v~iavg~Ll~~hi~l-Il~NqTTIE~ 45 (164)
-++.+++++++.+|.+|-+|. ...+|++..+
T Consensus 4 d~iLi~ICVaii~lIlY~iYnr~~~~q~~~~~ 35 (68)
T PF05961_consen 4 DFILIIICVAIIGLILYGIYNRKKTTQNTNPS 35 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCCCc
Confidence 345556677777788888887 3444444433
Done!