RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8715
         (164 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 32.2 bits (72), Expect = 0.033
 Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 9/26 (34%)

Query: 104 EQKNIKK---------AHSQPVLVVK 120
           E++ +KK           S P L +K
Sbjct: 18  EKQALKKLQASLKLYADDSAPALAIK 43


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.1 bits (64), Expect = 0.74
 Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 31/104 (29%)

Query: 82  SNGITWPVVEGCHQYSLTMEQLEQ----------------KNIK------KAHSQPVLVV 119
              I W  ++ C+     +E L++                 NIK      +A  + +L  
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 120 KNYNGRCLPLMFGLKVSWHTPCFDI-ARINLQVNETVLVTRFRN 162
           K Y   CL ++  ++ +     F++  +I       +L TRF+ 
Sbjct: 241 KPYE-NCLLVLLNVQNAKAWNAFNLSCKI-------LLTTRFKQ 276



 Score = 29.1 bits (64), Expect = 0.84
 Identities = 25/172 (14%), Positives = 51/172 (29%), Gaps = 58/172 (33%)

Query: 30  YFQVKAILKNQTNIEDWIVEKATKRK----------RQDKFVYPY--------------- 64
           Y ++K  L+N+  +   IV+     K            D++ Y +               
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 65  -------NLGW--KKNIHLVFGSSSISNGITWPVVEGCHQYSLTMEQLE--QKNIKKAHS 113
                  +  +  +K  H         +   W           T++QL+  +  I     
Sbjct: 492 LFRMVFLDFRFLEQKIRH---------DSTAWNASGSILN---TLQQLKFYKPYICDNDP 539

Query: 114 QPVLVVKNYNGRCLPLMFGLKVSWH---TPCFDIARINLQV-NETVLVTRFR 161
           +   +V         L F  K+  +   +   D+ RI L   +E +     +
Sbjct: 540 KYERLVNAI------LDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585


>3vmn_A Dextranase; TIM barrel, immunoglobrin fold, greek-KEY-motif,
           glycoside H family 66, hydrolase; 1.60A {Streptococcus
           mutans} PDB: 3vmo_A* 3vmp_A*
          Length = 643

 Score = 27.9 bits (61), Expect = 2.0
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 6   GKRLFHWGPLLAIVGVVIAVGM--LFYFQVKAILKNQTNI---EDWIVEKATKRKRQDKF 60
                    + A+V  V   G   + Y  + A   N+T +    ++I    T    Q+  
Sbjct: 184 SHSQVETDAVKALVNRVHQTGAVAMLYNMILAQNANETAVLPDTEYIYNYETGGYGQNGQ 243

Query: 61  VYPYNLGWKKNIHLV 75
           V  Y++  K   +  
Sbjct: 244 VMTYSIDDKPLQYYY 258


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.138    0.441 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,511,758
Number of extensions: 132994
Number of successful extensions: 380
Number of sequences better than 10.0: 1
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 10
Length of query: 164
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 78
Effective length of database: 4,300,587
Effective search space: 335445786
Effective search space used: 335445786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.2 bits)