RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8715
         (164 letters)



>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH)
           {Streptococcus pyogenes [TaxId: 1314]}
          Length = 196

 Score = 25.3 bits (54), Expect = 3.5
 Identities = 10/145 (6%), Positives = 36/145 (24%), Gaps = 2/145 (1%)

Query: 19  VGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKATKRKRQDKFVYPYNLGWKKNIHLVFGS 78
           VG+ + V +    +V  +    + ++      +  +    ++         K       +
Sbjct: 11  VGLSLGVLLSLQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAA 70

Query: 79  SSISNGITWPVVEGCHQYSLTMEQLEQKNIKKAHSQPVLVVKNYNGR-CLPLMFGLKVSW 137
              +  +        +   +     +           V        +  +P+ F  ++  
Sbjct: 71  YKEAE-LVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQ 129

Query: 138 HTPCFDIARINLQVNETVLVTRFRN 162
                 I      + E+  +     
Sbjct: 130 KFQTDRIIFSPEFLRESKALYDNLY 154


>d1jnda2 d.26.3.1 (A:279-370) Imaginal disc growth factor-2 {Fruit
          fly (Drosophila melanogaster) [TaxId: 7227]}
          Length = 92

 Score = 23.8 bits (51), Expect = 5.5
 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 3/41 (7%)

Query: 26 GMLFYFQVKAILKNQTNIEDWIVEKATKRKRQD--KFVYPY 64
          G+L Y ++   L N  N +     ++  R+  D  K     
Sbjct: 36 GLLSYAEICGKLSNPQN-QFLKGNESPLRRVSDPTKRFGGI 75


>d1olpa1 a.124.1.1 (A:1-249) Alpha-toxin, N-terminal domain
          {Clostridium absonum [TaxId: 29369]}
          Length = 249

 Score = 24.6 bits (53), Expect = 7.2
 Identities = 9/51 (17%), Positives = 15/51 (29%)

Query: 38 KNQTNIEDWIVEKATKRKRQDKFVYPYNLGWKKNIHLVFGSSSISNGITWP 88
          ++ T     IV +A +  + D               L         G T+P
Sbjct: 5  EDGTGTHSVIVTQAIEMLKHDLSKDEPEAIRNDLSILEKNLHKFQLGSTFP 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.441 

Gapped
Lambda     K      H
   0.267   0.0462    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 637,082
Number of extensions: 26683
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 5
Length of query: 164
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 85
Effective length of database: 1,322,926
Effective search space: 112448710
Effective search space used: 112448710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.3 bits)