BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8716
(141 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|156551898|ref|XP_001606777.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Nasonia vitripennis]
Length = 852
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 92/173 (53%), Positives = 111/173 (64%), Gaps = 40/173 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MDQLFEVSFSPL+A+GK+ S+
Sbjct: 601 MDQLFEVSFSPLSASGKSHSRCGKCRRYMKYIQTKPSRLHCAHCNETYNLPQNGNIRIYK 660
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKG-SGCNVCTHPTCGQALLST 80
ELKCP+DDFELL +S G +GKSY CPYC+NNPP+RDMKKG SGCN CTHPTC L S
Sbjct: 661 ELKCPLDDFELLSYSTGTRGKSYTFCPYCFNNPPFRDMKKGLSGCNACTHPTCPHGLNSN 720
Query: 81 GIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
G++SCL+CE G+LVLD S+APKWK+ CN+CD+IIH+F DA KV V + CDC
Sbjct: 721 GLSSCLECESGILVLDPSAAPKWKLVCNRCDVIIHLFADAHKVMVEADEVCDC 773
>gi|350424370|ref|XP_003493773.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Bombus impatiens]
Length = 851
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/173 (54%), Positives = 111/173 (64%), Gaps = 41/173 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MDQLFEVSFSPL+A+GKA S+
Sbjct: 601 MDQLFEVSFSPLSASGKAHSRCGKCRRYMKYIQTKPSRMHCAHCNETYNLPQNGNIRIYK 660
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKG-SGCNVCTHPTCGQALLST 80
ELKCP+DDFELL WS G +GKSY CPYCYNNPP+RDMKKG SGCN CTHPTC + S
Sbjct: 661 ELKCPLDDFELLSWSTGARGKSYTFCPYCYNNPPFRDMKKGMSGCNSCTHPTCPHGMNSN 720
Query: 81 GIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
G++SCL+C G+LVLD S+APKWK+ CN+CD+IIH+F +A KV V TE CDC
Sbjct: 721 GLSSCLECNAGILVLDPSAAPKWKLVCNRCDVIIHLFENAHKVTVDTE-VCDC 772
>gi|340722711|ref|XP_003399746.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Bombus terrestris]
Length = 851
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/173 (54%), Positives = 111/173 (64%), Gaps = 41/173 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MDQLFEVSFSPL+A+GKA S+
Sbjct: 601 MDQLFEVSFSPLSASGKAHSRCGKCRRYMKYIQTKPSRMHCAHCNETYNLPQNGNIRIYK 660
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKG-SGCNVCTHPTCGQALLST 80
ELKCP+DDFELL WS G +GKSY CPYCYNNPP+RDMKKG SGCN CTHPTC + S
Sbjct: 661 ELKCPLDDFELLSWSTGARGKSYTFCPYCYNNPPFRDMKKGMSGCNSCTHPTCPHGMNSN 720
Query: 81 GIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
G++SCL+C G+LVLD S+APKWK+ CN+CD+IIH+F +A KV V TE CDC
Sbjct: 721 GLSSCLECNAGILVLDPSAAPKWKLVCNRCDVIIHLFENAHKVTVDTE-VCDC 772
>gi|193591899|ref|XP_001951574.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 1 [Acyrthosiphon
pisum]
Length = 854
Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 105/172 (61%), Gaps = 39/172 (22%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFEVSF+ LAA+GKA+S+
Sbjct: 602 MDSLFEVSFTTLAASGKALSRCGKCRRYMKLIIAKPSRLHCSHCDETYNLPQNGNIRIYK 661
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
ELKCP+DDFEL+ WS GNKG+SY LCPYCYN P +RDMKK SGCN+C HPTC Q G
Sbjct: 662 ELKCPLDDFELVTWSTGNKGRSYPLCPYCYNQPAFRDMKKHSGCNLCLHPTCPQGFYVNG 721
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
IASCLQC+ GVLVLD SS PKWK+ CNKCD+I H+F DA K+ V CDC
Sbjct: 722 IASCLQCDNGVLVLDPSSGPKWKVGCNKCDVIFHLFEDAHKITVEESKECDC 773
>gi|328697671|ref|XP_003240406.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 2 [Acyrthosiphon
pisum]
Length = 853
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 105/172 (61%), Gaps = 39/172 (22%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFEVSF+ LAA+GKA+S+
Sbjct: 601 MDSLFEVSFTTLAASGKALSRCGKCRRYMKLIIAKPSRLHCSHCDETYNLPQNGNIRIYK 660
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
ELKCP+DDFEL+ WS GNKG+SY LCPYCYN P +RDMKK SGCN+C HPTC Q G
Sbjct: 661 ELKCPLDDFELVTWSTGNKGRSYPLCPYCYNQPAFRDMKKHSGCNLCLHPTCPQGFYVNG 720
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
IASCLQC+ GVLVLD SS PKWK+ CNKCD+I H+F DA K+ V CDC
Sbjct: 721 IASCLQCDNGVLVLDPSSGPKWKVGCNKCDVIFHLFEDAHKITVEESKECDC 772
>gi|332027377|gb|EGI67460.1| DNA topoisomerase 3-beta-1 [Acromyrmex echinatior]
Length = 848
Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 112/173 (64%), Gaps = 41/173 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MDQLFEVSFSPL+A+GKA S+
Sbjct: 598 MDQLFEVSFSPLSASGKAHSRCGKCRRYMKYIQTKPSRMHCAHCNETYNLPQNGNIRIYK 657
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKG-SGCNVCTHPTCGQALLST 80
ELKCP+DDFELL WS G +GKSY CPYCYNNPP+RDMKKG SGCN CTHPTC + S
Sbjct: 658 ELKCPLDDFELLSWSTGTRGKSYTFCPYCYNNPPFRDMKKGMSGCNSCTHPTCPHGMNSN 717
Query: 81 GIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
G++SCL+C+ G+LVLD S+APKWK+ CN+CD+IIH+F +A KV V T+ CDC
Sbjct: 718 GLSSCLECDLGILVLDPSAAPKWKLGCNRCDVIIHLFENAHKVTVDTD-TCDC 769
>gi|383857261|ref|XP_003704123.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Megachile rotundata]
Length = 851
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 94/173 (54%), Positives = 112/173 (64%), Gaps = 41/173 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MDQLFEVSFSPL+A+GKA S+
Sbjct: 601 MDQLFEVSFSPLSASGKAHSRCGKCRRYMKYIQTKPSRMHCAHCNETYNLPQNGNIRIYK 660
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKG-SGCNVCTHPTCGQALLST 80
ELKCP+DDFELL WS G +GKSY CPYCYNNPP+RDMKKG SGCN CTHPTC + S
Sbjct: 661 ELKCPLDDFELLSWSTGARGKSYTFCPYCYNNPPFRDMKKGTSGCNSCTHPTCPHGMNSN 720
Query: 81 GIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
GI+SCL+C+ G+LVLD S+APKWK+ CN+CD+IIH+F +A KV V T+ CDC
Sbjct: 721 GISSCLECDTGILVLDPSAAPKWKLGCNRCDVIIHLFENAHKVTVDTD-VCDC 772
>gi|307203099|gb|EFN82279.1| DNA topoisomerase 3-beta-1 [Harpegnathos saltator]
Length = 851
Score = 185 bits (469), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 94/173 (54%), Positives = 113/173 (65%), Gaps = 41/173 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MDQLFEVSFSPL+A+GKA S+
Sbjct: 601 MDQLFEVSFSPLSASGKAHSRCGKCRRYMKYIQTKPSRMHCAHCNETYNLPQNGNIRIYK 660
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKG-SGCNVCTHPTCGQALLST 80
ELKCP+DDFELL WS G +GKSY CPYCYNNPP+RDMKKG SGCN CTHPTC + ST
Sbjct: 661 ELKCPLDDFELLSWSTGARGKSYTFCPYCYNNPPFRDMKKGMSGCNSCTHPTCPHGMNST 720
Query: 81 GIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
G++SCL+C+ G+LVLD S+APKWK+ CN+CD+IIH+F +A KV V T+ CDC
Sbjct: 721 GLSSCLECDLGILVLDPSAAPKWKLGCNRCDVIIHLFENAHKVTVDTD-VCDC 772
>gi|307184245|gb|EFN70718.1| DNA topoisomerase 3-beta-1 [Camponotus floridanus]
Length = 851
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 112/173 (64%), Gaps = 41/173 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MDQLFEVSFSPL+A+GKA S+
Sbjct: 601 MDQLFEVSFSPLSASGKAHSRCGKCRRYMKYIQTKPSRMHCAHCNETYNLPQNGNIRIYK 660
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKG-SGCNVCTHPTCGQALLST 80
ELKCP+DDFELL WS G +GKSY CPYCYNNPP+RDMKKG SGCN CTHPTC + S
Sbjct: 661 ELKCPLDDFELLSWSTGARGKSYTFCPYCYNNPPFRDMKKGMSGCNSCTHPTCPHGMNSN 720
Query: 81 GIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
G++SCL+C+ G+LVLD S+APKWK+ CN+CD+IIH+F +A KV V T+ CDC
Sbjct: 721 GLSSCLECDLGILVLDPSAAPKWKLGCNRCDVIIHLFENAHKVTVDTD-TCDC 772
>gi|380025214|ref|XP_003696372.1| PREDICTED: DNA topoisomerase 3-beta-1 [Apis florea]
Length = 851
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 111/173 (64%), Gaps = 41/173 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MDQLFEVSFSPL+A+GKA S+
Sbjct: 601 MDQLFEVSFSPLSASGKAHSRCGKCRRYMKYIQTKPSRMHCAHCNETYNLPQNGNIRIYK 660
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKG-SGCNVCTHPTCGQALLST 80
ELKCP+DDFELL WS G +GKS+ CPYCYNNPP+RDMKKG SGCN CTHPTC + S
Sbjct: 661 ELKCPLDDFELLSWSTGTRGKSFTFCPYCYNNPPFRDMKKGISGCNSCTHPTCPHGMNSN 720
Query: 81 GIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
GI+SCL+C G+LVLD S+APKWK+ CN+CD+IIH+F +A KV V TE C+C
Sbjct: 721 GISSCLECNAGILVLDPSAAPKWKLGCNRCDVIIHLFENAHKVTVDTE-VCEC 772
>gi|66509929|ref|XP_625165.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 2 [Apis
mellifera]
Length = 851
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 111/173 (64%), Gaps = 41/173 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MDQLFEVSFSPL+A+GKA S+
Sbjct: 601 MDQLFEVSFSPLSASGKAHSRCGKCRRYMKYIQTKPSRMHCAHCNETYNLPQNGNIRIYK 660
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKG-SGCNVCTHPTCGQALLST 80
ELKCP+DDFELL WS G +GKS+ CPYCYNNPP+RDMKKG SGCN CTHPTC + S
Sbjct: 661 ELKCPLDDFELLSWSTGARGKSFTFCPYCYNNPPFRDMKKGISGCNSCTHPTCPHGMNSN 720
Query: 81 GIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
GI+SCL+C G+LVLD S+APKWK+ CN+CD+IIH+F +A KV V TE C+C
Sbjct: 721 GISSCLECNAGILVLDPSAAPKWKLGCNRCDVIIHLFENAHKVTVDTE-VCEC 772
>gi|242006813|ref|XP_002424239.1| DNA topoisomerase 3-beta, putative [Pediculus humanus corporis]
gi|212507608|gb|EEB11501.1| DNA topoisomerase 3-beta, putative [Pediculus humanus corporis]
Length = 852
Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 111/172 (64%), Gaps = 40/172 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MDQLFEVSFSPLA +GKA S+
Sbjct: 602 MDQLFEVSFSPLATSGKAHSRCGKCRRYMKLIQTKPSRLHCSHCDETYSLPQNGNIRLYK 661
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
ELKCP+DDFELL W+ GNKGKSY CPYCYN+PP++DMKKG GCN C+HP+C +L TG
Sbjct: 662 ELKCPLDDFELLYWTAGNKGKSYPFCPYCYNHPPFKDMKKGIGCNQCSHPSCPNSLNLTG 721
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
+ SC++CEGGVLVLD +S PKWK+ CN+CD+IIH+F DA K+ V E+ C+C
Sbjct: 722 LCSCVECEGGVLVLDPNSGPKWKLGCNRCDVIIHLFEDAHKISV-EEDVCNC 772
>gi|91081101|ref|XP_975504.1| PREDICTED: similar to prokaryotic DNA topoisomerase [Tribolium
castaneum]
gi|270005298|gb|EFA01746.1| hypothetical protein TcasGA2_TC007344 [Tribolium castaneum]
Length = 852
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 88/172 (51%), Positives = 111/172 (64%), Gaps = 40/172 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MDQLFEVSFSPL+A+GKA S+
Sbjct: 602 MDQLFEVSFSPLSASGKAHSRCGKCRRYMKYIQAKPPRLHCPQCDETYSLPQNGTIKLFK 661
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
ELKCP+DDFELL W+MGNKGKS++ CPYCYN+PP++DMKKG GCN C+HPTC + S G
Sbjct: 662 ELKCPLDDFELLYWTMGNKGKSFVFCPYCYNHPPFKDMKKGMGCNSCSHPTCPYSFNSNG 721
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
+ SC++C+ GVLVLD SS PKWK+ C +CD I+++F DAQK+ V +E CDC
Sbjct: 722 VCSCVECDSGVLVLDPSSGPKWKLGCTRCDTILNLFDDAQKLTVLSE-VCDC 772
>gi|357611732|gb|EHJ67631.1| putative prokaryotic DNA topoisomerase [Danaus plexippus]
Length = 848
Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 90/172 (52%), Positives = 109/172 (63%), Gaps = 42/172 (24%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MDQLFEVSFS L +GKA+S+
Sbjct: 602 MDQLFEVSFSSLKTSGKALSRCGKCRRYMRYIQAKPARLHCSHCDDTYTLPQHGTVRIYR 661
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
ELKCP+DDFELL WS G+KGKS+ LCPYCYN+PP+RDMKKG GCN CTHPTC + STG
Sbjct: 662 ELKCPLDDFELLSWSTGSKGKSFPLCPYCYNHPPFRDMKKGFGCNSCTHPTCPYGVNSTG 721
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
++ C++C+ GVLVLD SAPKWK+ CN+CD+II+VF DA +V VC E C C
Sbjct: 722 VSGCVECD-GVLVLD-PSAPKWKLACNRCDVIINVFEDASRVSVC-EAACAC 770
>gi|449281995|gb|EMC88926.1| DNA topoisomerase 3-beta-1 [Columba livia]
Length = 862
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/171 (50%), Positives = 107/171 (62%), Gaps = 40/171 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDDTYSLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPTCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCD 132
I C++CE GVLVLD +S PKWK+ CNKC++I+H F +A KV+V E CD
Sbjct: 723 IGQCVECENGVLVLDSTSGPKWKMACNKCNVIVHFFENAHKVRVSPE-TCD 772
>gi|291227018|ref|XP_002733487.1| PREDICTED: topoisomerase (DNA) III beta-like [Saccoglossus
kowalevskii]
Length = 3134
Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 80/171 (46%), Positives = 108/171 (63%), Gaps = 39/171 (22%)
Query: 1 MDQLFEVSFSPLAATGKAMS---------------------------------------Q 21
MD+LFEVSFSPLAA+GK +S Q
Sbjct: 603 MDELFEVSFSPLAASGKPLSRCGKCRRYMKYIQAKPSRLHCSNCDETYSLPMNGTIKLYQ 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
ELKCP+DDFE++ +S G+KGKSY LCPYC+++P ++ M+KG GCN CTHPTC ++ G
Sbjct: 663 ELKCPLDDFEMVLFSTGSKGKSYPLCPYCFSHPAFQGMRKGMGCNECTHPTCQHSVNLLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCD 132
+A C +CE G+LVLD +SAPKWK+ CNKC++I+ +F DA +V V TE+ C+
Sbjct: 723 LAQCFECEDGILVLDPTSAPKWKVACNKCNVIMKLFEDAHRVTVSTEDTCE 773
>gi|57525152|ref|NP_001006181.1| DNA topoisomerase 3-beta-1 [Gallus gallus]
gi|53132094|emb|CAG31872.1| hypothetical protein RCJMB04_12m15 [Gallus gallus]
gi|66796187|dbj|BAD99111.1| topoisomerase III beta [Gallus gallus]
Length = 862
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 105/167 (62%), Gaps = 39/167 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDDTYSLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPTCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTE 128
I C++CE GVLVLD +S PKWK+ CNKC++I+H F +A KV+V E
Sbjct: 723 IGQCVECENGVLVLDSTSGPKWKMACNKCNVIVHFFENAHKVRVSPE 769
>gi|326929518|ref|XP_003210910.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Meleagris gallopavo]
Length = 862
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/171 (50%), Positives = 107/171 (62%), Gaps = 40/171 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDDTYSLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPTCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCD 132
I C++CE GVLVLD +S PKWK+ CNKC++I+H F +A KV+V E CD
Sbjct: 723 IGQCVECENGVLVLDSTSGPKWKMACNKCNVIVHFFENAHKVRVSPE-TCD 772
>gi|449477313|ref|XP_002199057.2| PREDICTED: DNA topoisomerase 3-beta-1 [Taeniopygia guttata]
Length = 1002
Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 107/171 (62%), Gaps = 40/171 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 743 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDDTYSLPQNGTIKLYK 802
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 803 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPTCQHSLSMLG 862
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCD 132
I C++CE GVLVLD +S PKWK+ CNKC++++H F +A KV+V E CD
Sbjct: 863 IGQCVECENGVLVLDSTSGPKWKMACNKCNVVVHFFENAHKVRVSPE-TCD 912
>gi|307133770|ref|NP_001120391.2| topoisomerase (DNA) III beta isoform 2 [Xenopus (Silurana)
tropicalis]
Length = 845
Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 107/172 (62%), Gaps = 40/172 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 590 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYSLPQNGTIKLYK 649
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+ P+RDMKKG GCN CTHPTC +L G
Sbjct: 650 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHAPFRDMKKGMGCNECTHPTCQHSLSMLG 709
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
IA C++CE GV+VLD +S PKWK+ CNKC++I+H F +A +V+V E CD
Sbjct: 710 IAQCVECESGVMVLDSTSGPKWKMSCNKCNVIVHFFENAHRVRVSAE-TCDA 760
>gi|148228452|ref|NP_001082554.1| topoisomerase (DNA) III beta [Xenopus laevis]
gi|28422192|gb|AAH46848.1| MGC53016 protein [Xenopus laevis]
Length = 858
Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 105/167 (62%), Gaps = 39/167 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDDTYSLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+ P+RDMKKG GCN CTHPTC +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHTPFRDMKKGMGCNECTHPTCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTE 128
IA C++CE GV+VLD +S PKWK+ CNKC++I+H F +A +V+V E
Sbjct: 723 IAQCVECESGVMVLDSTSGPKWKMACNKCNVIVHFFENAHRVRVSAE 769
>gi|307219265|ref|NP_001182501.1| topoisomerase (DNA) III beta isoform 1 [Xenopus (Silurana)
tropicalis]
Length = 858
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 107/172 (62%), Gaps = 40/172 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYSLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+ P+RDMKKG GCN CTHPTC +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHAPFRDMKKGMGCNECTHPTCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
IA C++CE GV+VLD +S PKWK+ CNKC++I+H F +A +V+V E CD
Sbjct: 723 IAQCVECESGVMVLDSTSGPKWKMSCNKCNVIVHFFENAHRVRVSAE-TCDA 773
>gi|27882184|gb|AAH43953.1| MGC53016 protein, partial [Xenopus laevis]
Length = 698
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 105/168 (62%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 443 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDDTYSLPQNGTIKLYK 502
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+ P+RDMKKG GCN CTHPTC +L G
Sbjct: 503 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHTPFRDMKKGMGCNECTHPTCQHSLSMLG 562
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
IA C++CE GV+VLD +S PKWK+ CNKC++I+H F +A +V+V E
Sbjct: 563 IAQCVECESGVMVLDSTSGPKWKMACNKCNVIVHFFENAHRVRVSAET 610
>gi|327280846|ref|XP_003225162.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 2 [Anolis
carolinensis]
Length = 851
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 104/167 (62%), Gaps = 39/167 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 592 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYSLPQNGTIKLYK 651
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 652 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPTCQHSLNMLG 711
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTE 128
I C++CE GVLVLD S PKWK+ CNKC++++H F +A KV+V E
Sbjct: 712 IGQCVECENGVLVLDPISGPKWKMACNKCNVVVHFFENAHKVRVSAE 758
>gi|327280844|ref|XP_003225161.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 1 [Anolis
carolinensis]
Length = 862
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 104/167 (62%), Gaps = 39/167 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYSLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPTCQHSLNMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTE 128
I C++CE GVLVLD S PKWK+ CNKC++++H F +A KV+V E
Sbjct: 723 IGQCVECENGVLVLDPISGPKWKMACNKCNVVVHFFENAHKVRVSAE 769
>gi|417405013|gb|JAA49232.1| Putative dna topoisomerase iii alpha [Desmodus rotundus]
Length = 862
Score = 175 bits (443), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 105/168 (62%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPTCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V +E
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAHRVRVSSET 770
>gi|432094881|gb|ELK26289.1| DNA topoisomerase 3-beta-1 [Myotis davidii]
Length = 836
Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/172 (48%), Positives = 105/172 (61%), Gaps = 39/172 (22%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPTCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
I C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V E C
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAHRVRVSPETCSSC 774
>gi|431914329|gb|ELK15587.1| DNA topoisomerase 3-beta-1 [Pteropus alecto]
Length = 779
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/172 (48%), Positives = 106/172 (61%), Gaps = 39/172 (22%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 520 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 579
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 580 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPTCQHSLSMLG 639
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
I C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V +E C
Sbjct: 640 IGQCVECENGVLVLDPTSGPKWKMACNKCNVVAHCFENAHRVRVSSETCSSC 691
>gi|126324756|ref|XP_001363870.1| PREDICTED: DNA topoisomerase 3-beta-1 [Monodelphis domestica]
Length = 862
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 104/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHP+C +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC ++ H F +A +V+V T+
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKMACNKCSVVAHFFENAHRVRVSTDT 770
>gi|351706851|gb|EHB09770.1| DNA topoisomerase 3-beta-1 [Heterocephalus glaber]
Length = 862
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 107/175 (61%), Gaps = 41/175 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPTCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTE--NNCDCV 134
I C++CE G+LVLD +S PKWK+ CNKC+++ H F +A +V+V + N C+
Sbjct: 723 IGQCIECESGILVLDPTSGPKWKVACNKCNVVAHCFENAHRVRVSADTCNTCEAA 777
>gi|291190792|ref|NP_001167403.1| DNA topoisomerase 3-beta-1 [Salmo salar]
gi|223648214|gb|ACN10865.1| DNA topoisomerase 3-beta-1 [Salmo salar]
Length = 857
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 107/168 (63%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EV+FSP+AATGK +S+
Sbjct: 603 MDELMEVTFSPIAATGKPLSRCGKCHRFMKYIQAKPSRLHCAGCDETYSLPQNGAIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+D+FEL+ W+ G++GKSY LCPYC++NPP+RDMKKG GCN CTHP+C +L S G
Sbjct: 663 ELRCPLDEFELVLWTSGSRGKSYPLCPYCFSNPPFRDMKKGMGCNECTHPSCQHSLNSLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CEGGVLVLD +S PKWK+ CN+C++++H F A +VQV E+
Sbjct: 723 IGQCVECEGGVLVLDPTSGPKWKMACNRCNVMVHFFEHAHRVQVAQES 770
>gi|354481406|ref|XP_003502892.1| PREDICTED: DNA topoisomerase 3-beta-1 [Cricetulus griseus]
gi|344253468|gb|EGW09572.1| DNA topoisomerase 3-beta-1 [Cricetulus griseus]
Length = 862
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 104/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPTCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CN C+++ H F +A +V+V +N
Sbjct: 723 IGQCVECENGVLVLDPTSGPKWKVACNTCNVVAHCFENAHRVRVSADN 770
>gi|348585379|ref|XP_003478449.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Cavia porcellus]
Length = 862
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 107/175 (61%), Gaps = 41/175 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPTCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTE--NNCDCV 134
I C++CE G+LVLD +S PKWK+ CNKC+++ H F +A +V+V + N C+
Sbjct: 723 IGQCVECESGILVLDPTSGPKWKVACNKCNVVAHCFENAHRVRVSADTCNTCEAA 777
>gi|395517223|ref|XP_003762778.1| PREDICTED: DNA topoisomerase 3-beta-1 [Sarcophilus harrisii]
Length = 801
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 104/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 542 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 601
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHP+C +L G
Sbjct: 602 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLSLLG 661
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC +++H F +A +V+V +
Sbjct: 662 IGQCVECESGVLVLDPTSGPKWKMACNKCSVVVHFFENAHRVRVSADT 709
>gi|380787141|gb|AFE65446.1| DNA topoisomerase 3-beta-1 [Macaca mulatta]
Length = 862
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 104/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGRCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHP+C +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC ++ H F +A +V+V T+
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKVACNKCSVVAHCFENAHRVRVSTDT 770
>gi|388454142|ref|NP_001253336.1| DNA topoisomerase 3-beta-1 [Macaca mulatta]
gi|355784822|gb|EHH65673.1| hypothetical protein EGM_02484 [Macaca fascicularis]
gi|383412047|gb|AFH29237.1| DNA topoisomerase 3-beta-1 [Macaca mulatta]
Length = 862
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 104/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHP+C +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC ++ H F +A +V+V T+
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKVACNKCSVVAHCFENAHRVRVSTDT 770
>gi|355570227|gb|EHH25612.1| hypothetical protein EGK_21503 [Macaca mulatta]
Length = 862
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 104/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHP+C +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC ++ H F +A +V+V T+
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKVACNKCSVVAHCFENAHRVRVSTDT 770
>gi|348543167|ref|XP_003459055.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Oreochromis
niloticus]
Length = 858
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/172 (47%), Positives = 107/172 (62%), Gaps = 40/172 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSP+AATGK +S+
Sbjct: 603 MDELMEVSFSPIAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYSLPQNGAIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ W+ G +GKSY LCPYC++NPP+RDMKKG GCN CTHP+C +L S G
Sbjct: 663 ELRCPLDDFELVLWTSGARGKSYPLCPYCFSNPPFRDMKKGMGCNECTHPSCQHSLNSLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
I C++C+ GVLVLD +S PKW++ CNKC++++H F A KVQV E +CD
Sbjct: 723 IGQCVECDSGVLVLDPTSGPKWRMACNKCNVVVHFFEHAHKVQVAQE-SCDV 773
>gi|348543165|ref|XP_003459054.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Oreochromis
niloticus]
Length = 856
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/172 (47%), Positives = 107/172 (62%), Gaps = 40/172 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSP+AATGK +S+
Sbjct: 601 MDELMEVSFSPIAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYSLPQNGAIKLYK 660
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ W+ G +GKSY LCPYC++NPP+RDMKKG GCN CTHP+C +L S G
Sbjct: 661 ELRCPLDDFELVLWTSGARGKSYPLCPYCFSNPPFRDMKKGMGCNECTHPSCQHSLNSLG 720
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
I C++C+ GVLVLD +S PKW++ CNKC++++H F A KVQV E +CD
Sbjct: 721 IGQCVECDSGVLVLDPTSGPKWRMACNKCNVVVHFFEHAHKVQVAQE-SCDV 771
>gi|344295392|ref|XP_003419396.1| PREDICTED: DNA topoisomerase 3-beta-1 [Loxodonta africana]
Length = 862
Score = 172 bits (435), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 80/168 (47%), Positives = 104/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPTCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
+ C++CE GVLVLD +S PKWK+ CN+C+++ H F +A +V+V +
Sbjct: 723 VGQCVECESGVLVLDPTSGPKWKVACNRCNVVAHCFENAHRVRVAADT 770
>gi|403304311|ref|XP_003942748.1| PREDICTED: DNA topoisomerase 3-beta-1 [Saimiri boliviensis
boliviensis]
Length = 838
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 104/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 579 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSHLHCSHCDETYTLPQNGTIKLYK 638
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHP+C +L G
Sbjct: 639 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLSMLG 698
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V +
Sbjct: 699 IGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAHRVRVSADT 746
>gi|296191436|ref|XP_002743624.1| PREDICTED: DNA topoisomerase 3-beta-1 [Callithrix jacchus]
Length = 862
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 104/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHP+C +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V +
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAHRVRVSADT 770
>gi|12803239|gb|AAH02432.1| Topoisomerase (DNA) III beta [Homo sapiens]
Length = 862
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 104/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHP+C +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V +
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAHRVRVSADT 770
>gi|332859251|ref|XP_515006.3| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Pan troglodytes]
gi|332859253|ref|XP_003317172.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Pan troglodytes]
gi|410207778|gb|JAA01108.1| topoisomerase (DNA) III beta [Pan troglodytes]
gi|410256630|gb|JAA16282.1| topoisomerase (DNA) III beta [Pan troglodytes]
gi|410290228|gb|JAA23714.1| topoisomerase (DNA) III beta [Pan troglodytes]
gi|410350957|gb|JAA42082.1| topoisomerase (DNA) III beta [Pan troglodytes]
Length = 862
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 104/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHP+C +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V +
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAHRVRVSADT 770
>gi|4507635|ref|NP_003926.1| DNA topoisomerase 3-beta-1 [Homo sapiens]
gi|6686033|sp|O95985.1|TOP3B_HUMAN RecName: Full=DNA topoisomerase 3-beta-1; AltName: Full=DNA
topoisomerase III beta-1
gi|4768877|gb|AAD29670.1|AF125216_1 DNA topoisomerase III beta [Homo sapiens]
gi|4102879|gb|AAD01614.1| DNA topoisomerase III beta [Homo sapiens]
gi|4321652|gb|AAD15791.1| DNA topoisomerase III beta [Homo sapiens]
gi|47678723|emb|CAG30482.1| TOP3B [Homo sapiens]
gi|109451532|emb|CAK54627.1| TOP3B [synthetic construct]
gi|109452128|emb|CAK54926.1| TOP3B [synthetic construct]
gi|119579891|gb|EAW59487.1| topoisomerase (DNA) III beta, isoform CRA_a [Homo sapiens]
gi|119579892|gb|EAW59488.1| topoisomerase (DNA) III beta, isoform CRA_a [Homo sapiens]
gi|119579894|gb|EAW59490.1| topoisomerase (DNA) III beta, isoform CRA_a [Homo sapiens]
gi|119579895|gb|EAW59491.1| topoisomerase (DNA) III beta, isoform CRA_a [Homo sapiens]
gi|208965626|dbj|BAG72827.1| topoisomerase (DNA) III beta [synthetic construct]
Length = 862
Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 104/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHP+C +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V +
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAHRVRVSADT 770
>gi|397472510|ref|XP_003807785.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Pan paniscus]
gi|397472512|ref|XP_003807786.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Pan paniscus]
Length = 862
Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 104/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHP+C +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V +
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAHRVRVSADT 770
>gi|297716768|ref|XP_002834672.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Pongo abelii]
gi|297716770|ref|XP_002834673.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 3 [Pongo abelii]
Length = 862
Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 104/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHP+C +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V +
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAHRVRVSADT 770
>gi|148665014|gb|EDK97430.1| topoisomerase (DNA) III beta, isoform CRA_a [Mus musculus]
Length = 867
Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 106/175 (60%), Gaps = 41/175 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 608 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 667
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 668 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPTCQHSLSMLG 727
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTE--NNCDCV 134
I C++CE GVLVLD +S PKWK+ CN C+++ H F +A +V+V + N C+
Sbjct: 728 IGQCVECENGVLVLDPTSGPKWKVACNTCNVVAHCFENAHRVRVSADTCNTCEAA 782
>gi|6755851|ref|NP_035754.1| DNA topoisomerase 3-beta-1 [Mus musculus]
gi|6686042|sp|Q9Z321.1|TOP3B_MOUSE RecName: Full=DNA topoisomerase 3-beta-1; AltName: Full=DNA
topoisomerase III beta-1
gi|3868800|dbj|BAA34227.1| topoisomerase III beta [Mus musculus]
gi|21594767|gb|AAH31723.1| Topoisomerase (DNA) III beta [Mus musculus]
gi|74138777|dbj|BAE27200.1| unnamed protein product [Mus musculus]
gi|74194881|dbj|BAE26026.1| unnamed protein product [Mus musculus]
gi|148665016|gb|EDK97432.1| topoisomerase (DNA) III beta, isoform CRA_c [Mus musculus]
Length = 862
Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 106/175 (60%), Gaps = 41/175 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPTCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTE--NNCDCV 134
I C++CE GVLVLD +S PKWK+ CN C+++ H F +A +V+V + N C+
Sbjct: 723 IGQCVECENGVLVLDPTSGPKWKVACNTCNVVAHCFENAHRVRVSADTCNTCEAA 777
>gi|395862158|ref|XP_003803330.1| PREDICTED: DNA topoisomerase 3-beta-1 [Otolemur garnettii]
Length = 862
Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 104/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHP+C +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLSLLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V +
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAHRVRVSADT 770
>gi|158255430|dbj|BAF83686.1| unnamed protein product [Homo sapiens]
Length = 862
Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 104/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHP+C +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V +
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAHRVRVSADT 770
>gi|260805074|ref|XP_002597412.1| hypothetical protein BRAFLDRAFT_80591 [Branchiostoma floridae]
gi|229282677|gb|EEN53424.1| hypothetical protein BRAFLDRAFT_80591 [Branchiostoma floridae]
Length = 858
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/171 (46%), Positives = 110/171 (64%), Gaps = 39/171 (22%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MDQLFEV+FSPLAA+GK +S+
Sbjct: 602 MDQLFEVTFSPLAASGKPLSRCGKCRRFMKYVQAKPSRLHCATCDETYNLPQGGTVKLYK 661
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
E+KCP+DDFEL+ +S G+KGK+Y LCPYC+N+PP+ DMKK GCN CTHPTC +L++ G
Sbjct: 662 EIKCPLDDFELVLFSTGSKGKTYPLCPYCFNHPPFPDMKKAMGCNQCTHPTCTHSLINNG 721
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCD 132
+A C++CE GVLV+D +SAPKWK+ CN+C+++I++F +A KV V +C+
Sbjct: 722 VAQCVECEDGVLVMDQTSAPKWKMACNRCNVVINMFENAHKVNVSASEDCE 772
>gi|67971930|dbj|BAE02307.1| unnamed protein product [Macaca fascicularis]
Length = 407
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 104/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 148 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 207
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHP+C +L G
Sbjct: 208 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLSMLG 267
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC ++ H F +A +V+V T+
Sbjct: 268 IGQCVECESGVLVLDPTSGPKWKVACNKCSVVAHCFENAHRVRVSTDT 315
>gi|402883653|ref|XP_003905324.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Papio anubis]
gi|402883655|ref|XP_003905325.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Papio anubis]
Length = 862
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 103/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHP+C +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC ++ H F +A +V+V +
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKVACNKCSVVAHCFENAHRVRVSADT 770
>gi|326667668|ref|XP_003198651.1| PREDICTED: DNA topoisomerase 3-beta-1 [Danio rerio]
Length = 861
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 109/171 (63%), Gaps = 40/171 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSP+AATGK +S+
Sbjct: 603 MDELMEVSFSPIAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYSLPQNGAIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
ELKCP+D+FEL+ W+ G++GKSY +CPYC++NPP+RDMKKG GCN CTHP+C +L S G
Sbjct: 663 ELKCPLDEFELVLWTSGSRGKSYPVCPYCFSNPPFRDMKKGMGCNECTHPSCQHSLNSLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCD 132
I C++CE GVLV D +S PKW++ CNKC++++H F A KVQV ++++CD
Sbjct: 723 IGQCVECETGVLVFDPTSGPKWRMACNKCNVVVHFFEQAHKVQV-SQDSCD 772
>gi|157786738|ref|NP_001099331.1| DNA topoisomerase 3-beta-1 [Rattus norvegicus]
gi|149019716|gb|EDL77864.1| topoisomerase (DNA) III beta (predicted) [Rattus norvegicus]
Length = 862
Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 105/175 (60%), Gaps = 41/175 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPTCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTE--NNCDCV 134
I C++CE GVLVLD +S PKWK+ CN C ++ H F +A +V+V + N C+
Sbjct: 723 IGQCVECENGVLVLDPTSGPKWKVACNTCSVVAHCFDNAHRVRVSADTCNTCEAA 777
>gi|432876346|ref|XP_004073003.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-beta-1-like
[Oryzias latipes]
Length = 751
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/171 (46%), Positives = 110/171 (64%), Gaps = 40/171 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSP+AATGK +S+
Sbjct: 560 MDELMEVSFSPIAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYNVPQNGAIKLYK 619
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ W+ G +GKSY LCPYC++NPP+RDMKKG GCN CTHP+C +L + G
Sbjct: 620 ELRCPLDDFELVLWTSGARGKSYPLCPYCFSNPPFRDMKKGMGCNECTHPSCQHSLSALG 679
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCD 132
I C++CE GVLVLD +S PKW++ CN+C++++H+F A KVQV ++++C+
Sbjct: 680 IGQCVECESGVLVLDPTSGPKWRMACNRCNVLVHLFEHAHKVQV-SQDSCE 729
>gi|149720154|ref|XP_001493576.1| PREDICTED: DNA topoisomerase 3-beta-1 [Equus caballus]
Length = 862
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 103/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYC N+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCSNHPPFRDMKKGMGCNECTHPTCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V +
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAHRVRVSADT 770
>gi|291406914|ref|XP_002719771.1| PREDICTED: topoisomerase (DNA) III beta [Oryctolagus cuniculus]
Length = 863
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/168 (47%), Positives = 104/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 604 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 663
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GK+Y LCPYCYN+PP+RDMKKG GCN CTHP+C +L G
Sbjct: 664 ELRCPLDDFELVLWSSGSRGKAYPLCPYCYNHPPFRDMKKGMGCNECTHPSCPHSLSMLG 723
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V +
Sbjct: 724 IGQCVECERGVLVLDATSGPKWKVACNKCNVVAHCFENAYRVRVSADT 771
>gi|355725619|gb|AES08614.1| topoisomerase III beta [Mustela putorius furo]
Length = 861
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 103/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYC N+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCSNHPPFRDMKKGMGCNECTHPTCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C+ CEGGVLVLD +S PKWK+ CNKC+++ H F +A +V+V +
Sbjct: 723 IGQCVGCEGGVLVLDPTSGPKWKVACNKCNVVAHCFENAYRVRVSADT 770
>gi|335301482|ref|XP_003359220.1| PREDICTED: DNA topoisomerase 3-beta-1 [Sus scrofa]
Length = 859
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 105/168 (62%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYC N+PP+RDMKKG+GCN CTHPTC +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCSNHPPFRDMKKGTGCNECTHPTCQHSLNMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKW++ CN+C+++ H F +A +V+V ++
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWRVACNRCNVVAHCFENAHRVRVSSDT 770
>gi|410977257|ref|XP_003995024.1| PREDICTED: DNA topoisomerase 3-beta-1 [Felis catus]
Length = 862
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 103/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYC N+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCANHPPFRDMKKGMGCNECTHPTCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V +
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAYRVRVSADT 770
>gi|301792373|ref|XP_002931153.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Ailuropoda melanoleuca]
Length = 862
Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 103/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYC N+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCSNHPPFRDMKKGMGCNECTHPTCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V +
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAYRVRVSADT 770
>gi|73995957|ref|XP_534771.2| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Canis lupus
familiaris]
Length = 862
Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 103/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYC N+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCSNHPPFRDMKKGMGCNECTHPTCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V +
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAYRVRVSADT 770
>gi|440895796|gb|ELR47898.1| DNA topoisomerase 3-beta-1, partial [Bos grunniens mutus]
Length = 816
Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats.
Identities = 77/164 (46%), Positives = 102/164 (62%), Gaps = 39/164 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMS---------------------------------------Q 21
MD+L EVSFSPLAATGK +S +
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYC N+PP+RDMKK +GCN CTHP+C +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCSNHPPFRDMKKSTGCNECTHPSCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQV 125
I C++CE GVLVLD +S PKW++ CN+C+++ H F +A +V+V
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWRVACNRCNVVAHCFENAHRVRV 766
>gi|281337636|gb|EFB13220.1| hypothetical protein PANDA_021957 [Ailuropoda melanoleuca]
Length = 839
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 103/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 580 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 639
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYC N+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 640 ELRCPLDDFELVLWSSGSRGKSYPLCPYCSNHPPFRDMKKGMGCNECTHPTCQHSLSMLG 699
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V +
Sbjct: 700 IGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAYRVRVSADT 747
>gi|47206372|emb|CAF93528.1| unnamed protein product [Tetraodon nigroviridis]
Length = 449
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 106/171 (61%), Gaps = 40/171 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSP+A TGK +S+
Sbjct: 237 MDELMEVSFSPIAETGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYSLPQNGAIKLYK 296
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ W+ G +GKSY LCPYC++NPP+RDMKKG GCN CTHP+C +L S G
Sbjct: 297 ELRCPLDDFELVLWTSGARGKSYPLCPYCFSNPPFRDMKKGMGCNECTHPSCQHSLNSFG 356
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCD 132
I C++C+ GVLVLD +S PKWK+ CNKC++++H F A +VQV E +CD
Sbjct: 357 IGQCVECDSGVLVLDPTSGPKWKMACNKCNVVVHFFEHAHRVQVAQE-SCD 406
>gi|444732291|gb|ELW72593.1| DNA topoisomerase 3-beta-1 [Tupaia chinensis]
Length = 946
Score = 168 bits (425), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 102/164 (62%), Gaps = 39/164 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 687 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 746
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYC+N+PP+RDMKKG GCN CTHP+C +L G
Sbjct: 747 ELRCPLDDFELVLWSSGSRGKSYPLCPYCFNHPPFRDMKKGMGCNECTHPSCQHSLSMLG 806
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQV 125
I C++CE GVLVLD +S PKWK+ CNKC+++ F DA +V+V
Sbjct: 807 IGQCVECESGVLVLDPTSGPKWKVACNKCNVVARCFDDAHRVRV 850
>gi|390351189|ref|XP_795949.3| PREDICTED: DNA topoisomerase 3-beta-1 [Strongylocentrotus
purpuratus]
Length = 954
Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 104/164 (63%), Gaps = 39/164 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFEVSFSPLAATGK MS+
Sbjct: 695 MDDLFEVSFSPLAATGKPMSRCGKCHRFMKYISAKPMRLHCPTCEETYSLPQNGSIKLYK 754
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
E++CP+DDFEL+ WS G KGKSY +CPYC+++PP+ +MKKG GCN CTHPTC +L G
Sbjct: 755 EIRCPLDDFELVLWSSGPKGKSYPVCPYCFSHPPFTEMKKGQGCNGCTHPTCAHSLTMLG 814
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQV 125
+A C++C+ GV+VLD SSAPKW++ CNKC+II+++F DA KV +
Sbjct: 815 VAQCIECDEGVMVLDPSSAPKWRLACNKCNIIMNIFEDAHKVTL 858
>gi|332000010|ref|NP_001193635.1| DNA topoisomerase 3-beta-1 [Bos taurus]
Length = 861
Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 77/164 (46%), Positives = 102/164 (62%), Gaps = 39/164 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMS---------------------------------------Q 21
MD+L EVSFSPLAATGK +S +
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYC N+PP+RDMKKG+GCN CTHP+C +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCSNHPPFRDMKKGTGCNECTHPSCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQV 125
I C++CE GVLVLD +S PKW++ CN+C+++ F +A +V+V
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWRVACNRCNVVARCFENAHRVRV 766
>gi|405959918|gb|EKC25894.1| DNA topoisomerase 3-beta-1 [Crassostrea gigas]
Length = 851
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 104/172 (60%), Gaps = 39/172 (22%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+LFEV+FSPLAATGK +S+
Sbjct: 597 MDELFEVTFSPLAATGKPLSRCGKCRRYMKYVQAKPSRLHCSNCDETYSLPQNGNIKLYK 656
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
ELKCP+DDFEL+ W+ G +GKS+ LCPYC+NNPP+ DM+K GCN CTHPTC AL+ G
Sbjct: 657 ELKCPLDDFELVLWTTGVRGKSFPLCPYCFNNPPFPDMRKQFGCNQCTHPTCQHALIQHG 716
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
+ C++CE G+LVLD +S PKW++ CNKC ++I+ F +A KV V E DC
Sbjct: 717 VCECVECETGILVLDPTSYPKWRMACNKCQVVINFFENAHKVSVSEELCDDC 768
>gi|170047094|ref|XP_001851071.1| DNA topoisomerase 3-beta [Culex quinquefasciatus]
gi|167869634|gb|EDS33017.1| DNA topoisomerase 3-beta [Culex quinquefasciatus]
Length = 855
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/179 (46%), Positives = 107/179 (59%), Gaps = 41/179 (22%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE +FS L+++GKA+S+
Sbjct: 599 MDILFEATFSSLSSSGKALSRCGKCRRYMKYIQSKPSRLHCSTCDETYTMPVKGVVRVYR 658
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
ELKCP+DDFELL WS G KGKSY LCPYCYN+PP+RDM K SGCN C HPTC +L G
Sbjct: 659 ELKCPLDDFELLAWSNGAKGKSYPLCPYCYNHPPFRDMAKNSGCNSCPHPTCAHSLTLLG 718
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTE--NNCDCVQFTS 138
++SC++C+ G+LVLD +S+PKWK+ CN CD+II+ F DA KV V E + C Q T+
Sbjct: 719 VSSCIECDRGILVLDCTSSPKWKLVCNFCDVIINCFDDAVKVNVEAESCDECGAQQVTA 777
>gi|426393714|ref|XP_004063158.1| PREDICTED: DNA topoisomerase 3-beta-1 [Gorilla gorilla gorilla]
Length = 653
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 87/111 (78%)
Query: 19 MSQELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALL 78
+ +EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHP+C +L
Sbjct: 451 LYKELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLS 510
Query: 79 STGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
GI C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V +
Sbjct: 511 MLGIGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAHRVRVSADT 561
>gi|443731127|gb|ELU16364.1| hypothetical protein CAPTEDRAFT_182010 [Capitella teleta]
Length = 856
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 99/167 (59%), Gaps = 40/167 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+LFEVSFSPLA +GK MS+
Sbjct: 599 MDELFEVSFSPLADSGKPMSRCGKCRRYMKYVQAKPSRLHCSSCDDTYSLPQNGNIKIYK 658
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
ELKCP+DDFEL+ W+ G K + CPYCYNN P+ DMKKG GCN CTHPTCG A TG
Sbjct: 659 ELKCPLDDFELIYWTAGPNTKGFPFCPYCYNNSPFHDMKKGMGCNECTHPTCGNAFGQTG 718
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTE 128
+++C++C GGVLVLD S PKWK+ CNKC+++ ++F A+ V+V E
Sbjct: 719 VSACVEC-GGVLVLDPLSGPKWKVACNKCNVMFNLFDSAKNVEVTDE 764
>gi|241721971|ref|XP_002404156.1| topoisomerase I, putative [Ixodes scapularis]
gi|215505336|gb|EEC14830.1| topoisomerase I, putative [Ixodes scapularis]
Length = 857
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 102/172 (59%), Gaps = 39/172 (22%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+LFEV+F+PL+ +G+ +S+
Sbjct: 601 MDELFEVTFTPLSESGRPLSRCGKCRRYLKLVASKPSRLHCVQCNDTHSIPQNGSVRTFR 660
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
ELKCP+DDFELL W G KGKS+I CPYCYN+PP+RD GCN CTHPTC ++++ G
Sbjct: 661 ELKCPLDDFELLQWYGGTKGKSFIFCPYCYNHPPFRDTGHQIGCNSCTHPTCPHSMMANG 720
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
I+ C +C GVLVLD +SAPKWKI CN+CD+I+ + DA+KV V E +C
Sbjct: 721 ISVCPECTSGVLVLDPASAPKWKIGCNRCDVIVQLCEDARKVSVEDEQCEEC 772
>gi|167525962|ref|XP_001747315.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774150|gb|EDQ87782.1| predicted protein [Monosiga brevicollis MX1]
Length = 803
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 74/171 (43%), Positives = 102/171 (59%), Gaps = 42/171 (24%)
Query: 1 MDQLFEVSFSPLAATGKAMS---------------------------------------Q 21
MDQLFEV+F+PL +TGK +S +
Sbjct: 557 MDQLFEVTFTPLKSTGKQLSRCGKCNRYMKYVSAKPQRLYCPTCDETFALPQGGKIVLYK 616
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+D FELL ++ G G++Y LCPYCYNNPP+ DM K SGCN CTHPTC +L+ G
Sbjct: 617 ELRCPLDKFELLMFTTGTTGRAYPLCPYCYNNPPFEDMDKASGCNDCTHPTCEHSLIQLG 676
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCD 132
+ C +C GG LVLD SS PKW++CCN+C+I+I +F +A +++ T+ C+
Sbjct: 677 VTQC-EC-GGQLVLDASSKPKWRLCCNRCNIVIRLFENAHSIKI-TKTPCE 724
>gi|47205931|emb|CAF94033.1| unnamed protein product [Tetraodon nigroviridis]
Length = 182
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 88/111 (79%)
Query: 19 MSQELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALL 78
+ +EL+CP+DDFEL+ W+ G +GKSY LCPYC++NPP+RDMKKG GCN CTHP+C +L
Sbjct: 27 LYKELRCPLDDFELVLWTSGARGKSYPLCPYCFSNPPFRDMKKGMGCNECTHPSCQHSLN 86
Query: 79 STGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
S GI C++C+ GVLVLD +S PKWK+ CNKC++++H F A +VQV E+
Sbjct: 87 SFGIGQCVECDSGVLVLDPTSGPKWKMACNKCNVVVHFFEHAHRVQVAQES 137
>gi|146332543|gb|ABQ22777.1| DNA topoisomerase 3 beta 1-like protein [Callithrix jacchus]
Length = 209
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 87/111 (78%)
Query: 19 MSQELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALL 78
+ +EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHP+C +L
Sbjct: 7 LYKELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLS 66
Query: 79 STGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
GI C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V +
Sbjct: 67 MLGIGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAHRVRVSADT 117
>gi|195133228|ref|XP_002011041.1| GI16324 [Drosophila mojavensis]
gi|193907016|gb|EDW05883.1| GI16324 [Drosophila mojavensis]
Length = 858
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 99/169 (58%), Gaps = 39/169 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------E 22
MD LFE SFSPLA +GKA S+ E
Sbjct: 597 MDMLFESSFSPLAESGKAHSRCGKCRRYMKYIQTKPARLYCSHCEDNYTLPNGNVKVYRE 656
Query: 23 LKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTGI 82
KCP+DDF LL +S G KG+S+ CPYCYN+PP+RDM K GCN CTHPTC +L + GI
Sbjct: 657 FKCPLDDFGLLAFSTGVKGRSFAFCPYCYNHPPFRDMPKFGGCNTCTHPTCPHSLNTLGI 716
Query: 83 ASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNC 131
+SC++CE GVLVLD + +P WK+ CN+CD+II+ F A K+ V EN C
Sbjct: 717 SSCVECETGVLVLDSTLSPTWKLGCNRCDVIINCFKGATKITV-EENKC 764
>gi|157129809|ref|XP_001655482.1| prokaryotic DNA topoisomerase [Aedes aegypti]
gi|108872077|gb|EAT36302.1| AAEL011603-PA [Aedes aegypti]
Length = 856
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 99/165 (60%), Gaps = 40/165 (24%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE +FS L ++GKA+S+
Sbjct: 599 MDILFEATFSSLCSSGKALSRCGKCRRYMKYIQTKPARLHCSQCDETYTMPTKGIVRVYR 658
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
ELKCP+DDFELL WS G KGKSY LCPYCYN PP+RDM K SGCN C HPTC +L S G
Sbjct: 659 ELKCPLDDFELLAWSNGAKGKSYPLCPYCYNYPPFRDMPKNSGCNSCPHPTCAHSLSSLG 718
Query: 82 IASCLQCEGGVLVLDLSSAPK-WKICCNKCDIIIHVFPDAQKVQV 125
++SC++C+ GVLVLD + +PK W++ CN CD+II+ F DA KV V
Sbjct: 719 VSSCIECDRGVLVLDCTMSPKSWRLVCNFCDVIINCFDDAVKVNV 763
>gi|195041892|ref|XP_001991334.1| GH12112 [Drosophila grimshawi]
gi|193901092|gb|EDV99958.1| GH12112 [Drosophila grimshawi]
Length = 862
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 97/171 (56%), Gaps = 38/171 (22%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------E 22
MD LFE SFSPLA +GKA S+ E
Sbjct: 598 MDMLFESSFSPLAESGKAHSRCGKCRRYMKYIQMKPARLYCSNCDENYTLPNGNVKVYRE 657
Query: 23 LKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTGI 82
KCP+DDF LL +S G KG+S+ CPYCYN+PP+RDM K GCN CTHPTC +L + GI
Sbjct: 658 FKCPLDDFGLLAFSTGVKGRSFPFCPYCYNHPPFRDMPKFGGCNTCTHPTCPHSLNTLGI 717
Query: 83 ASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
+ C++CE GVLVLD + +P WK+ CN+CD+II+ F A K+ V DC
Sbjct: 718 SGCVECEMGVLVLDSTLSPTWKLVCNRCDVIINCFKGATKITVEESKCSDC 768
>gi|198435562|ref|XP_002121520.1| PREDICTED: similar to topoisomerase (DNA) III beta, partial [Ciona
intestinalis]
Length = 827
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 101/173 (58%), Gaps = 42/173 (24%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFEV+F+PL+ +GK MS+
Sbjct: 576 MDSLFEVTFTPLSESGKPMSRCGKCRRFMKYISAAPPRLYCNTCDETYDLPPKTNVKLYK 635
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
ELKCP+D+FELL S G GK+Y LCPYCYN+PP+RDMKK SGCN CTHP C +L S G
Sbjct: 636 ELKCPLDEFELLVCSTGTNGKTYTLCPYCYNHPPFRDMKKASGCNSCTHPGCEHSLSSLG 695
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICC--NKCDIIIHVFPDAQKVQVCTENNCD 132
++ C+ CE G+LVLD +S+PKWK+ C N+C ++ +F A ++ V TE C+
Sbjct: 696 VSPCMTCETGILVLDPTSSPKWKLACNDNRCPTVVTLFQHAHRIGV-TEETCE 747
>gi|156393418|ref|XP_001636325.1| predicted protein [Nematostella vectensis]
gi|156223427|gb|EDO44262.1| predicted protein [Nematostella vectensis]
Length = 856
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 104/172 (60%), Gaps = 40/172 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+LFEVSF+PL+ +GK +S+
Sbjct: 601 MDELFEVSFTPLSESGKPLSRCGKCNRYMKYIAAKPSRLHCATCDETYSLPQNGSIKLYK 660
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G KGKS +CPYCY++PP+ M+KG GCN CTHPTC + + G
Sbjct: 661 ELRCPLDDFELVLWSTGAKGKSTPVCPYCYSHPPFPTMRKGMGCNQCTHPTCPHSEEALG 720
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
+A CL+CE G+L LD +SAPKW++ CN C+++IH+ A ++ + +E+ CDC
Sbjct: 721 VADCLECEKGMLNLDPTSAPKWRLACNMCNVVIHMCEGAFRISL-SEDECDC 771
>gi|195399043|ref|XP_002058130.1| GJ15664 [Drosophila virilis]
gi|194150554|gb|EDW66238.1| GJ15664 [Drosophila virilis]
Length = 858
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 97/171 (56%), Gaps = 38/171 (22%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------E 22
MD LFE SFSPLA +GKA S+ E
Sbjct: 597 MDMLFESSFSPLAESGKAHSRCGKCRRYMKYIQTKPARLYCSHCDENYTLPNGNVKVYRE 656
Query: 23 LKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTGI 82
KCP+DDF LL +S G KG+S+ CPYCYN+PP+RDM K GCN CTHPTC +L + GI
Sbjct: 657 FKCPLDDFGLLAFSTGVKGRSFPFCPYCYNHPPFRDMPKFGGCNSCTHPTCPHSLNTLGI 716
Query: 83 ASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
+ C++CE GVLVLD + +P WK+ CN+CD+II+ F A K+ V DC
Sbjct: 717 SGCVECETGVLVLDSTLSPTWKLGCNRCDVIINCFKGATKITVEESKCSDC 767
>gi|195448334|ref|XP_002071612.1| GK10076 [Drosophila willistoni]
gi|194167697|gb|EDW82598.1| GK10076 [Drosophila willistoni]
Length = 884
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 95/171 (55%), Gaps = 38/171 (22%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------E 22
MD LFEVSFSPLA +GKA S+ E
Sbjct: 598 MDALFEVSFSPLAESGKAHSRCGKCRRYMKYIQTKPARLHCSHCDETYALPNGNVKVYRE 657
Query: 23 LKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTGI 82
KCP+DDF+LL +S G KG+SY CPYCYN+PP+ DM GCN CTH TC +L S GI
Sbjct: 658 FKCPLDDFDLLAFSTGVKGRSYPFCPYCYNHPPFSDMPYLGGCNTCTHATCPHSLNSLGI 717
Query: 83 ASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
+ C++C GVLVLD + AP WK+ CN+CD+II+ F A K+ V DC
Sbjct: 718 SGCVECPTGVLVLDSTLAPSWKLGCNRCDVIINCFKGATKISVDETKCTDC 768
>gi|195164959|ref|XP_002023313.1| GL20281 [Drosophila persimilis]
gi|198468405|ref|XP_001354695.2| GA17464 [Drosophila pseudoobscura pseudoobscura]
gi|194105418|gb|EDW27461.1| GL20281 [Drosophila persimilis]
gi|198146398|gb|EAL31750.2| GA17464 [Drosophila pseudoobscura pseudoobscura]
Length = 875
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 93/163 (57%), Gaps = 38/163 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------E 22
MD LFEVSFSPLA +GKA S+ E
Sbjct: 598 MDALFEVSFSPLAESGKAHSRCGKCRRYMKYIQTKPARLHCSHCDETYSLPNGNVKVYRE 657
Query: 23 LKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTGI 82
KCP+DDFELL +S G KGKS+ CPYCYN+PP+ DM GCN CTH TC +L + GI
Sbjct: 658 FKCPLDDFELLAFSTGVKGKSFPFCPYCYNHPPFSDMPSLGGCNTCTHATCPHSLNTLGI 717
Query: 83 ASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQV 125
+ C++C G+LVLD + AP WK+ CN+CD+II+ F A K+ V
Sbjct: 718 SGCVECPTGILVLDSTLAPTWKLGCNRCDVIINCFKGATKITV 760
>gi|194762590|ref|XP_001963417.1| GF20299 [Drosophila ananassae]
gi|190629076|gb|EDV44493.1| GF20299 [Drosophila ananassae]
Length = 878
Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 93/163 (57%), Gaps = 38/163 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------E 22
MD LFEVSFSPLA +GKA S+ E
Sbjct: 598 MDALFEVSFSPLAESGKAHSRCGKCRRYMKYIQTKPARLHCSHCDETYSLPSGNVKVYRE 657
Query: 23 LKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTGI 82
KCP+DDF+LL +S G KG+SY CPYCYN+PP+ DM GCN CTH TC +L + GI
Sbjct: 658 FKCPLDDFDLLAFSTGVKGRSYPFCPYCYNHPPFSDMPNLGGCNTCTHATCPHSLNTLGI 717
Query: 83 ASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQV 125
+ C++C GVLVLD + AP WK+ CN+CD+II+ F A KV V
Sbjct: 718 SGCVECPTGVLVLDCTLAPTWKLGCNRCDVIINCFKGATKVTV 760
>gi|195469926|ref|XP_002099887.1| GE16470 [Drosophila yakuba]
gi|194187411|gb|EDX00995.1| GE16470 [Drosophila yakuba]
Length = 878
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 93/163 (57%), Gaps = 38/163 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------E 22
MD LFEVSFSPLA +GKA S+ E
Sbjct: 598 MDSLFEVSFSPLAESGKAHSRCGKCRRYMKYIQTKPARLHCSHCDETYALPIGNVKVYRE 657
Query: 23 LKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTGI 82
KCP+DDF+LL +S G KG+SY CPYCYN+PP+ DM GCN CTH TC +L + GI
Sbjct: 658 FKCPLDDFDLLAFSTGVKGRSYPFCPYCYNHPPFSDMPHLGGCNTCTHATCPHSLNTLGI 717
Query: 83 ASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQV 125
+ C++C GVLVLD + AP WK+ CN+CD+II+ F A K+ V
Sbjct: 718 SGCVECPTGVLVLDCTLAPTWKLGCNRCDVIINCFKGATKITV 760
>gi|194896190|ref|XP_001978430.1| GG17682 [Drosophila erecta]
gi|190650079|gb|EDV47357.1| GG17682 [Drosophila erecta]
Length = 878
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 93/163 (57%), Gaps = 38/163 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------E 22
MD LFEVSFSPLA +GKA S+ E
Sbjct: 598 MDSLFEVSFSPLAESGKAHSRCGKCRRYMKYIQTKPARLHCSHCYETYALPIGNVKVYRE 657
Query: 23 LKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTGI 82
KCP+DDF+LL +S G KG+SY CPYCYN+PP+ DM GCN CTH TC +L + GI
Sbjct: 658 FKCPLDDFDLLAFSTGVKGRSYPFCPYCYNHPPFSDMPHLGGCNTCTHSTCPHSLNTLGI 717
Query: 83 ASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQV 125
+ C++C GVLVLD + AP WK+ CN+CD+II+ F A K+ V
Sbjct: 718 SGCVECPTGVLVLDCTLAPTWKLGCNRCDVIINCFKGATKITV 760
>gi|312375379|gb|EFR22766.1| hypothetical protein AND_14242 [Anopheles darlingi]
Length = 752
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 102/172 (59%), Gaps = 42/172 (24%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE +FS L ++GK++S+
Sbjct: 496 MDMLFEATFSSLCSSGKSLSRCGKCRRYMKYIQTKPQRLHCSTCDETYQLPVKGIVRLYR 555
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
E KCP+DDFEL+ + G KGK++ LCPYCYN+PP+RDM+K SGCN C HPTC +L G
Sbjct: 556 EYKCPLDDFELVASTNGAKGKAFPLCPYCYNHPPFRDMQKSSGCNSCPHPTCAHSLSLLG 615
Query: 82 IASCLQCEGGVLVLDLSSAPK-WKICCNKCDIIIHVFPDAQKVQVCTENNCD 132
++SC +C+ GVLVLD + APK W++ CN CD+II+ F DA KV V E++C+
Sbjct: 616 VSSCFECDRGVLVLDCTMAPKTWRLVCNVCDVIINCFDDATKVTV--EDSCE 665
>gi|24640096|ref|NP_511059.2| topoisomerase 3beta [Drosophila melanogaster]
gi|14286175|sp|O96651.2|TOP3B_DROME RecName: Full=DNA topoisomerase 3-beta; AltName: Full=DNA
topoisomerase III beta
gi|7290697|gb|AAF46144.1| topoisomerase 3beta [Drosophila melanogaster]
gi|54650844|gb|AAV37001.1| LD10035p [Drosophila melanogaster]
gi|220950396|gb|ACL87741.1| Top3beta-PA [synthetic construct]
Length = 875
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 93/163 (57%), Gaps = 38/163 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------E 22
MD LFEVSFSPLA +GKA S+ E
Sbjct: 598 MDALFEVSFSPLAESGKAHSRCGKCRRYMKYIQTKPARLHCSHCDETYALPIGNVKVYRE 657
Query: 23 LKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTGI 82
KCP+DDF+LL +S G KG+SY CPYCYN+PP+ DM GCN CT+ C +L + GI
Sbjct: 658 FKCPLDDFDLLAFSTGVKGRSYPFCPYCYNHPPFSDMPHLGGCNTCTNANCPHSLNTLGI 717
Query: 83 ASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQV 125
+SC++C GVLVLD + AP WK+ CN+CD+II+ F A K+ V
Sbjct: 718 SSCVECPTGVLVLDCTLAPTWKLGCNRCDVIINCFKGATKITV 760
>gi|16769908|gb|AAL29173.1| SD10251p [Drosophila melanogaster]
Length = 444
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 93/163 (57%), Gaps = 38/163 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------E 22
MD LFEVSFSPLA +GKA S+ E
Sbjct: 167 MDALFEVSFSPLAESGKAHSRCGKCRRYMKYIQTKPARLHCSHCDETYALPIGNVKVYRE 226
Query: 23 LKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTGI 82
KCP+DDF+LL +S G KG+SY CPYCYN+PP+ DM GCN CT+ C +L + GI
Sbjct: 227 FKCPLDDFDLLAFSTGVKGRSYPFCPYCYNHPPFSDMPHLGGCNTCTNANCPHSLNTLGI 286
Query: 83 ASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQV 125
+SC++C GVLVLD + AP WK+ CN+CD+II+ F A K+ V
Sbjct: 287 SSCVECPTGVLVLDCTLAPTWKLGCNRCDVIINCFKGATKITV 329
>gi|195565409|ref|XP_002106294.1| GD16199 [Drosophila simulans]
gi|194203668|gb|EDX17244.1| GD16199 [Drosophila simulans]
Length = 821
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 93/163 (57%), Gaps = 38/163 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------E 22
MD LFEVSFSPLA +GKA S+ E
Sbjct: 544 MDALFEVSFSPLAESGKAHSRCGKCRRYMKYIQTKPARLHCSHCDETYALPIGNVKVYRE 603
Query: 23 LKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTGI 82
KCP+DDF+LL +S G KG+SY CPYCYN+PP+ DM GCN CT+ C +L + GI
Sbjct: 604 FKCPLDDFDLLVFSTGVKGRSYPFCPYCYNHPPFSDMPHLGGCNTCTNANCPHSLNTLGI 663
Query: 83 ASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQV 125
+SC++C GVLVLD + AP WK+ CN+CD+II+ F A K+ V
Sbjct: 664 SSCVECPTGVLVLDCTLAPTWKLGCNRCDVIINCFKGATKITV 706
>gi|195340394|ref|XP_002036798.1| GM12581 [Drosophila sechellia]
gi|194130914|gb|EDW52957.1| GM12581 [Drosophila sechellia]
Length = 921
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 93/163 (57%), Gaps = 38/163 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------E 22
MD LFEVSFSPLA +GKA S+ E
Sbjct: 644 MDALFEVSFSPLAESGKAHSRCGKCRRYMKYIQTKPARLHCSHCDETYALPIGNVKVYRE 703
Query: 23 LKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTGI 82
KCP+DDF+LL +S G KG+SY CPYCYN+PP+ DM GCN CT+ C +L + GI
Sbjct: 704 FKCPLDDFDLLVFSTGVKGRSYPFCPYCYNHPPFSDMPHLGGCNTCTNANCPHSLNTLGI 763
Query: 83 ASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQV 125
+SC++C GVLVLD + AP WK+ CN+CD+II+ F A K+ V
Sbjct: 764 SSCVECPTGVLVLDCTLAPTWKLGCNRCDVIINCFKGATKITV 806
>gi|4235475|gb|AAD13219.1| topoisomerase III [Drosophila melanogaster]
Length = 875
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 93/163 (57%), Gaps = 38/163 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------E 22
MD LFEVSFSPLA +GKA S+ E
Sbjct: 598 MDALFEVSFSPLAESGKAHSRCGKCRRYMKYIQTKPARLHCSHCDETYALPIGNVKVYRE 657
Query: 23 LKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTGI 82
KCP+DDF+LL +S G KG+SY CPYCYN+PP+ DM GCN CT+ C +L + GI
Sbjct: 658 FKCPLDDFDLLAFSTGVKGRSYPFCPYCYNHPPFSDMPHLGGCNTCTNANCPHSLNTLGI 717
Query: 83 ASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQV 125
+SC++C GVLVLD + AP WK+ CN+CD+II+ F A K+ V
Sbjct: 718 SSCVECPTGVLVLDCTLAPTWKLGCNRCDMIINCFKGATKITV 760
>gi|391327272|ref|XP_003738127.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Metaseiulus
occidentalis]
Length = 851
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 97/167 (58%), Gaps = 40/167 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE +FS L+ +GK MS+
Sbjct: 600 MDGLFECTFSSLSDSGKPMSRCGKCRRYMKIVNSKPTRLHCPNCDETLSLPQNGGVRMFR 659
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
E+KCP+D++ELL W G++ KS+I CPYCYN+PP++DMKKGSGCN C HPTC + + G
Sbjct: 660 EIKCPLDEYELLQWYGGSECKSFIFCPYCYNHPPFKDMKKGSGCNACDHPTCLYSKTTNG 719
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTE 128
I +C +C+ GVLVLD +S PKWKI C++CD+++ F A +V V E
Sbjct: 720 ICNCPECD-GVLVLDPASGPKWKIACHRCDVMVSCFEHASRVTVEEE 765
>gi|326432311|gb|EGD77881.1| DNA topoisomerase [Salpingoeca sp. ATCC 50818]
Length = 855
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 98/172 (56%), Gaps = 40/172 (23%)
Query: 1 MDQLFEVSFSPLAATGK---------------------------------------AMSQ 21
MD+LFEV+F+ L+ TGK + +
Sbjct: 600 MDELFEVNFTLLSKTGKNLCRCGKCNRYLKLIIAKPQRLYCPTCDDTYSLPQRGKIMLYK 659
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
ELKCP+D FEL+ S G+ GK++ LCPYCYNNPP+ M KGSGCN C + C + ++ G
Sbjct: 660 ELKCPLDGFELVMCSTGSNGKAFPLCPYCYNNPPFESMPKGSGCNACVNALCKHSAINLG 719
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
+A C+ C+GG+LV+D S PKW++ CN+C+ I+ + +A ++V T+N C+C
Sbjct: 720 VAPCVSCDGGILVMDPVSKPKWRLACNQCNTIVTLIENAHDIRV-TKNVCEC 770
>gi|256052775|ref|XP_002569927.1| prokaryotic DNA topoisomerase [Schistosoma mansoni]
gi|360043203|emb|CCD78615.1| putative prokaryotic DNA topoisomerase [Schistosoma mansoni]
Length = 1159
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 65/172 (37%), Positives = 94/172 (54%), Gaps = 42/172 (24%)
Query: 1 MDQLFEVSFSPLAATGKAMS----------------QEL--------------------- 23
MDQLFEVSF+ LA++GK +S Q L
Sbjct: 908 MDQLFEVSFTTLASSGKPLSRCGKCHRYLKFIDSRPQRLHCSICNETYTLPQNGTIRPYK 967
Query: 24 --KCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
KCP+D FELLC++ G KG++ + CPYC+++PP+ M K SGCN C HPTC Q++ S G
Sbjct: 968 TEKCPLDKFELLCYTQGGKGRNMVFCPYCFSHPPFESMPKLSGCNRCPHPTCPQSMESLG 1027
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
+ +C C G+LVLD S+APK+++ CN+C + + + V+ + N C
Sbjct: 1028 VDACPDCPYGILVLDDSNAPKYRLNCNRCPTFLSI---SDSVKSMSVKNVSC 1076
>gi|384490193|gb|EIE81415.1| hypothetical protein RO3G_06120 [Rhizopus delemar RA 99-880]
Length = 761
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 94/178 (52%), Gaps = 45/178 (25%)
Query: 1 MDQLFEVSFSPLAATGKAMS---------------------------------------Q 21
MD+LFE +FSPLAATG+ +S +
Sbjct: 543 MDELFEATFSPLAATGRPLSKCGKCKRYMKYIALKPNRLHCSTCDETYALPLNGNIKLYR 602
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ +S G+KG Y +CPYCYN+PP+ + KG CN C HPTC ++++
Sbjct: 603 ELRCPLDDFELVLYSTGSKGTGYPICPYCYNHPPFENYTKGMSCNHCPHPTCPHSMVTNA 662
Query: 82 IASCLQCEG------GVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
I C + E G L+LD +SAP+WK+ CN+C+I+ + V + + C+C
Sbjct: 663 ICPCPESENETDPCKGSLILDATSAPRWKLSCNECNIVSSFVDTVKNVNIIKNDMCEC 720
>gi|324504807|gb|ADY42072.1| DNA topoisomerase 3-beta-1 [Ascaris suum]
Length = 858
Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 70/178 (39%), Positives = 93/178 (52%), Gaps = 49/178 (27%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
+D LFE SF+ LA TGK S+
Sbjct: 603 VDSLFEDSFTTLADTGKPFSRCGKCRRFMKLIATKPQRLHCPSCQETYSLPSGKDGTLRL 662
Query: 22 --ELKCPIDDFELLCWSMGNKGK---SYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQA 76
E KCP+D+F+L+ W G+ GK SY LCPYCYNNPP+ M+KG GCN CTHP C +
Sbjct: 663 HAEHKCPLDEFDLVYWQ-GSGGKLSVSYALCPYCYNNPPFEGMRKGWGCNQCTHPACPHS 721
Query: 77 LLSTGIASC-LQCEG--GVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNC 131
++ G+ C +C G G+LVLD SAPKW++ CN+C ++ +F A KV+V E C
Sbjct: 722 FMTQGLVKCPRECAGGTGILVLDPQSAPKWRLACNRCPAVVGLFEGASKVRV-HEKQC 778
>gi|170583127|ref|XP_001896443.1| DNA topoisomerase III beta-1 [Brugia malayi]
gi|158596370|gb|EDP34727.1| DNA topoisomerase III beta-1, putative [Brugia malayi]
Length = 858
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 95/180 (52%), Gaps = 48/180 (26%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
+D LFE SF+ LAA+GK S+
Sbjct: 605 VDSLFEDSFTSLAASGKPFSRCGKCRRFMKLVASKPQRLHCPNCQDTYSLPSAKDGLLRL 664
Query: 22 --ELKCPIDDFELLCWSMGNKGK---SYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQA 76
E KCP+DDF+L+ W G GK SY+LCPYCYNNPP+ MKKGSGC+ C +P C +
Sbjct: 665 HGENKCPLDDFDLIYWQ-GPGGKLSMSYVLCPYCYNNPPFEGMKKGSGCHECCNPVCPHS 723
Query: 77 LLSTGIASCLQCEG---GVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
L+ G+ C + G GVLVLD SAPKW+I CNKC ++ +F A +V+V T+ DC
Sbjct: 724 FLTLGVVQCPRRCGAGHGVLVLDPQSAPKWRISCNKCSAVVGLFEGALRVKVLTKQCEDC 783
>gi|168067110|ref|XP_001785468.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662910|gb|EDQ49709.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 869
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 67/191 (35%), Positives = 95/191 (49%), Gaps = 59/191 (30%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE FSPLA +GK +S+
Sbjct: 597 MDTLFEAQFSPLADSGKPLSKCGKCLRYMKYIAMRPSRLYCPSCEEVHALPQNGHIKLYK 656
Query: 22 ELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYRDMKK------------------G 62
E+ CP+D+FEL+ +S+ G GKSY LCPYCYNNPP+ +K G
Sbjct: 657 EITCPLDNFELVLFSLAGPDGKSYPLCPYCYNNPPFEGAEKLFGGVGFSKEPGKHVGKGG 716
Query: 63 SGCNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQK 122
C +C HPTC +++ G+ +C +C+G LVLD SAPKW++ CNKC ++++ +A K
Sbjct: 717 MPCTLCPHPTCRNSMIQQGVCACPECDG-TLVLDPVSAPKWRLDCNKCSNLVYLPHNAHK 775
Query: 123 VQVCTENNCDC 133
+ VC E +C
Sbjct: 776 IAVCQERCEEC 786
>gi|402584219|gb|EJW78161.1| DNA topoisomerase [Wuchereria bancrofti]
Length = 401
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 95/180 (52%), Gaps = 48/180 (26%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
+D LFE SF+ LAA+GK S+
Sbjct: 148 VDSLFEDSFTSLAASGKPFSRCGKCRRFMKLVASKPQRLHCPNCQDTYSLPSAKDGLLRL 207
Query: 22 --ELKCPIDDFELLCWSMGNKGK---SYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQA 76
E KCP+DDF+L+ W G GK SY+LCPYCYNNPP+ MKKGSGC+ C +P C +
Sbjct: 208 HGENKCPLDDFDLIYWQ-GPGGKLSMSYVLCPYCYNNPPFEGMKKGSGCHECCNPVCPHS 266
Query: 77 LLSTGIASCLQCEG---GVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
L+ G+ C + G GVLVLD SAPKW+I CNKC ++ +F A +V+V T+ DC
Sbjct: 267 FLTLGVVQCPRRCGAGHGVLVLDPQSAPKWRISCNKCSAVVGLFEGALRVKVLTKQCEDC 326
>gi|393909566|gb|EFO21893.2| DNA topoisomerase III beta-1 [Loa loa]
Length = 859
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 93/175 (53%), Gaps = 48/175 (27%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
+D LFE SF+ LAA+GK S+
Sbjct: 603 VDSLFEDSFTSLAASGKPFSRCGKCRRFMKLVASKPQRLHCPNCQDTYSLPSAKDGLLRL 662
Query: 22 --ELKCPIDDFELLCWSMGNKGK---SYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQA 76
E KCP+DDF+L+ W G GK SY LCPYCYNNPP+ M+KGSGC+ C++P C +
Sbjct: 663 HGENKCPLDDFDLIYWQ-GPGGKLSMSYALCPYCYNNPPFEGMRKGSGCHECSNPVCPHS 721
Query: 77 LLSTGIASC-LQCEG--GVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTE 128
L+ G+ C QC+ GVLVLD SAPKW+I CN+C ++ VF A +V++ +
Sbjct: 722 FLTLGVVQCPRQCDAGHGVLVLDPQSAPKWRISCNRCSAVVAVFEGALRVKILAK 776
>gi|312079442|ref|XP_003142175.1| DNA topoisomerase III beta-1 [Loa loa]
Length = 871
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 93/175 (53%), Gaps = 48/175 (27%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
+D LFE SF+ LAA+GK S+
Sbjct: 615 VDSLFEDSFTSLAASGKPFSRCGKCRRFMKLVASKPQRLHCPNCQDTYSLPSAKDGLLRL 674
Query: 22 --ELKCPIDDFELLCWSMGNKGK---SYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQA 76
E KCP+DDF+L+ W G GK SY LCPYCYNNPP+ M+KGSGC+ C++P C +
Sbjct: 675 HGENKCPLDDFDLIYWQ-GPGGKLSMSYALCPYCYNNPPFEGMRKGSGCHECSNPVCPHS 733
Query: 77 LLSTGIASC-LQCEG--GVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTE 128
L+ G+ C QC+ GVLVLD SAPKW+I CN+C ++ VF A +V++ +
Sbjct: 734 FLTLGVVQCPRQCDAGHGVLVLDPQSAPKWRISCNRCSAVVAVFEGALRVKILAK 788
>gi|449669651|ref|XP_002153907.2| PREDICTED: DNA topoisomerase 3-beta-1-like [Hydra magnipapillata]
Length = 818
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 76/112 (67%), Gaps = 1/112 (0%)
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
ELKCP+DDFELL W+ G KS+ LCP+C++NPP MK+ SGCN CTHPTC +L
Sbjct: 578 ELKCPLDDFELLLWTRGGATKSFPLCPFCFSNPPLDGMKEKSGCNQCTHPTCKHSLAKLS 637
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
+ C C+GGVLVL+ SAPKW++ CNKC+ I + + V V ++ C+C
Sbjct: 638 VMECDACDGGVLVLEPFSAPKWQLSCNKCNCIWSLLKNVPFVSV-KDDICEC 688
>gi|308480547|ref|XP_003102480.1| hypothetical protein CRE_04022 [Caenorhabditis remanei]
gi|308261212|gb|EFP05165.1| hypothetical protein CRE_04022 [Caenorhabditis remanei]
Length = 867
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 94/175 (53%), Gaps = 43/175 (24%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
+D LFE SF+ L+ TGK S+
Sbjct: 604 VDTLFEASFTTLSDTGKPFSRCGKCRRYMKLVQTKPQRLFCPTCQETYSVPNFKDGVLKV 663
Query: 22 --ELKCPIDDFELLCW--SMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQAL 77
+ KCP+DDF+++ W + G +S+ LCP+C+NNPP+ M +GSGC+ C HP+C ++
Sbjct: 664 IGDHKCPLDDFDIILWQGAGGKLARSFTLCPFCFNNPPFEKMPQGSGCDNCVHPSCQYSI 723
Query: 78 LSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCD 132
S G+ +CLQ GGV++LD S PKW++ CNKC ++ +F A KV+V N+C+
Sbjct: 724 SSNGVCACLQDCGGVMLLDTQSHPKWRMTCNKCPSVVGLFDGALKVKVDRNNSCE 778
>gi|422293447|gb|EKU20747.1| DNA topoisomerase III [Nannochloropsis gaditana CCMP526]
Length = 870
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 63/161 (39%), Positives = 85/161 (52%), Gaps = 48/161 (29%)
Query: 1 MDQLFEVSFSPLAATGKAMS---------------------------------------Q 21
MD LFE +FSPLAATGK +S +
Sbjct: 594 MDSLFEATFSPLAATGKPLSRCGKCRRFMKYIHLKPQRLYCPICNETYALPQNGTIKLYK 653
Query: 22 ELKCPIDDFELLCWSMGN----KGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQAL 77
ELKCP+DDFELL +S+GN +GKS+ LCPYCY++PP+ + GC+ C HPTC +L
Sbjct: 654 ELKCPLDDFELLLFSLGNAQGAQGKSFPLCPYCYSHPPFEGLSI-MGCDSCMHPTCKHSL 712
Query: 78 LSTGIASCLQCEG----GVLVLDLSSAPKWKICCNKCDIII 114
G+ C G G LVLD++S P WK+ CN+C+ ++
Sbjct: 713 TRNGVCPCPGESGAACPGTLVLDVNSYPNWKMACNRCNNLV 753
>gi|341886419|gb|EGT42354.1| hypothetical protein CAEBREN_30446, partial [Caenorhabditis
brenneri]
Length = 671
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 43/175 (24%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
+D LFE SF+ L+ TGK S+
Sbjct: 405 VDTLFEASFTTLSDTGKPFSRCGKCRRYMKLVQTKPQRLFCPTCQETYSVPNFKDGVLKV 464
Query: 22 --ELKCPIDDFELLCWSM--GNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQAL 77
+ KCP+DDF+++ + G +S+ LCP+C+NNPP+ M +GSGC+ CTHP+C ++
Sbjct: 465 IGDHKCPLDDFDVILYQGPGGKLARSFTLCPFCFNNPPFEKMPQGSGCDNCTHPSCQYSI 524
Query: 78 LSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCD 132
S G+ +CLQ GGV++LD S PKW++ CNKC ++ +F A KV+V +C+
Sbjct: 525 SSNGVCACLQDCGGVMLLDTQSHPKWRMTCNKCPSVVGLFDGATKVKVDRNKSCE 579
>gi|358256372|dbj|GAA57803.1| DNA topoisomerase III, partial [Clonorchis sinensis]
Length = 235
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 76/107 (71%)
Query: 19 MSQELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALL 78
+ +E++CP+DDFELL WS G KGK+ + CPYC+++PP+ +M KGS C+ C HPTC Q++
Sbjct: 37 LYKEVRCPLDDFELLLWSQGTKGKNIVFCPYCFSHPPFANMPKGSACHWCLHPTCPQSME 96
Query: 79 STGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQV 125
S + +C +C G+ VLD S+APK++ CN+C ++ V +++ V
Sbjct: 97 SRAVDACPECPNGLFVLDDSTAPKYRFNCNRCPTMLLVSDAIKQISV 143
>gi|392892251|ref|NP_001254382.1| Protein Y48C3A.14, isoform c [Caenorhabditis elegans]
gi|371571202|emb|CCF23413.1| Protein Y48C3A.14, isoform c [Caenorhabditis elegans]
Length = 733
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 43/175 (24%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
+D LFE SF+ L+ TGK S+
Sbjct: 470 VDTLFEASFTTLSDTGKPFSRCGKCRRYMKLVQTKPQRLYCPTCQETYAVPNFKDGVLKV 529
Query: 22 --ELKCPIDDFELLCWSM--GNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQAL 77
+ KCP+DDF+++ + G +++ LCP+C+NNPP+ M +G+GC+ C HP+C ++
Sbjct: 530 IGDHKCPLDDFDVILYQGPGGKLARTFTLCPFCFNNPPFEKMPQGAGCDTCVHPSCQYSI 589
Query: 78 LSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCD 132
S G+ CLQ GGV++LD S PKW++ CNKC ++ +F A KV+V + +C+
Sbjct: 590 SSNGVCGCLQDCGGVMLLDTQSHPKWRMTCNKCPSVVGLFEGAIKVKVDSTRSCE 644
>gi|392892249|ref|NP_001254381.1| Protein Y48C3A.14, isoform a [Caenorhabditis elegans]
gi|371571205|emb|CCF23416.1| Protein Y48C3A.14, isoform a [Caenorhabditis elegans]
Length = 869
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 43/175 (24%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
+D LFE SF+ L+ TGK S+
Sbjct: 606 VDTLFEASFTTLSDTGKPFSRCGKCRRYMKLVQTKPQRLYCPTCQETYAVPNFKDGVLKV 665
Query: 22 --ELKCPIDDFELLCWSM--GNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQAL 77
+ KCP+DDF+++ + G +++ LCP+C+NNPP+ M +G+GC+ C HP+C ++
Sbjct: 666 IGDHKCPLDDFDVILYQGPGGKLARTFTLCPFCFNNPPFEKMPQGAGCDTCVHPSCQYSI 725
Query: 78 LSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCD 132
S G+ CLQ GGV++LD S PKW++ CNKC ++ +F A KV+V + +C+
Sbjct: 726 SSNGVCGCLQDCGGVMLLDTQSHPKWRMTCNKCPSVVGLFEGAIKVKVDSTRSCE 780
>gi|313224215|emb|CBY32300.1| unnamed protein product [Oikopleura dioica]
Length = 856
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Query: 19 MSQELKCPIDDFELLCWSMGNKGKS-YILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQAL 77
+ QE KCP+DDFELL + G + + +CPYCYNNPP+ M + C+ C HP+C Q+L
Sbjct: 652 LYQEKKCPLDDFELLLAASGGASSTGFAICPYCYNNPPFPGMPDPAPCSSCLHPSCSQSL 711
Query: 78 LSTGIASCLQCEGGVLVLDLSSAPKWKICCN--KCDIIIHVFPDAQKVQVCTE 128
TG+ +C +C+ GV+ LD SS PKW++ CN C +++ +F A KV V E
Sbjct: 712 RRTGVTACSECDDGVIYLDPSSKPKWRLSCNNINCKVVVKIFEGAHKVDVLDE 764
>gi|313229708|emb|CBY18523.1| unnamed protein product [Oikopleura dioica]
Length = 856
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Query: 19 MSQELKCPIDDFELLCWSMGNKGKS-YILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQAL 77
+ QE KCP+DDFELL + G + + +CPYCYNNPP+ M + C+ C HP+C Q+L
Sbjct: 652 LYQEKKCPLDDFELLLAASGGASSTGFAICPYCYNNPPFPGMPDPAPCSSCLHPSCSQSL 711
Query: 78 LSTGIASCLQCEGGVLVLDLSSAPKWKICCN--KCDIIIHVFPDAQKVQVCTE 128
TG+ +C +C+ GV+ LD SS PKW++ CN C +++ +F A KV V E
Sbjct: 712 RRTGVTACSECDDGVIYLDPSSKPKWRLSCNNINCKVVVKIFEGAHKVDVLDE 764
>gi|313239950|emb|CBY32313.1| unnamed protein product [Oikopleura dioica]
Length = 856
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Query: 19 MSQELKCPIDDFELLCWSMGNKGKS-YILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQAL 77
+ QE KCP+DDFELL + G + + +CPYCYNNPP+ M + C+ C HP+C Q+L
Sbjct: 652 LYQEKKCPLDDFELLLAASGGASSTGFAICPYCYNNPPFPGMPDPAPCSSCLHPSCSQSL 711
Query: 78 LSTGIASCLQCEGGVLVLDLSSAPKWKICCN--KCDIIIHVFPDAQKVQVCTE 128
TG+ +C +C+ GV+ LD SS PKW++ CN C +++ +F A KV V E
Sbjct: 712 RRTGVTACSECDDGVIYLDPSSKPKWRLSCNNINCKVVVKIFEGAHKVDVLDE 764
>gi|392892253|ref|NP_001254383.1| Protein Y48C3A.14, isoform b [Caenorhabditis elegans]
gi|371571204|emb|CCF23415.1| Protein Y48C3A.14, isoform b [Caenorhabditis elegans]
Length = 364
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 43/175 (24%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
+D LFE SF+ L+ TGK S+
Sbjct: 101 VDTLFEASFTTLSDTGKPFSRCGKCRRYMKLVQTKPQRLYCPTCQETYAVPNFKDGVLKV 160
Query: 22 --ELKCPIDDFELLCWSM--GNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQAL 77
+ KCP+DDF+++ + G +++ LCP+C+NNPP+ M +G+GC+ C HP+C ++
Sbjct: 161 IGDHKCPLDDFDVILYQGPGGKLARTFTLCPFCFNNPPFEKMPQGAGCDTCVHPSCQYSI 220
Query: 78 LSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCD 132
S G+ CLQ GGV++LD S PKW++ CNKC ++ +F A KV+V + +C+
Sbjct: 221 SSNGVCGCLQDCGGVMLLDTQSHPKWRMTCNKCPSVVGLFEGAIKVKVDSTRSCE 275
>gi|339245323|ref|XP_003378587.1| DNA topoisomerase 3-beta-1 protein [Trichinella spiralis]
gi|316972491|gb|EFV56168.1| DNA topoisomerase 3-beta-1 protein [Trichinella spiralis]
Length = 819
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/133 (39%), Positives = 76/133 (57%), Gaps = 17/133 (12%)
Query: 7 VSFSPLAATGKAMSQELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCN 66
+SF PL + KCP+D F+L+ G G + LCPYCY+NPP+ DM+ CN
Sbjct: 608 ISFRPL--------NDAKCPLDGFDLIYCVNGGNGGDHALCPYCYSNPPFEDMRPEQACN 659
Query: 67 VCTHPTCGQALLSTGIASCLQCE--------GGVLVLDLSSAPKWKICCNKCDIIIHVFP 118
CTHPTC + + +A C C G L+LD SAPKW++CCN+C + +F
Sbjct: 660 RCTHPTCPYSSRTLAVAICEYCARTAAKSAFRGSLLLDPGSAPKWQLCCNQCKFKVRIFK 719
Query: 119 DAQKVQVCTENNC 131
A+ V+V T+++C
Sbjct: 720 GAKMVRV-TDDHC 731
>gi|296089603|emb|CBI39422.3| unnamed protein product [Vitis vinifera]
Length = 837
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 93/173 (53%), Gaps = 44/173 (25%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE FSPLA +G+A+S+
Sbjct: 640 MDALFEAQFSPLADSGRALSKCGKCLRYMKYISTQPSRMYCGTCEEVYYLPQKGTIKLYK 699
Query: 22 ELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLST 80
EL CP+D+FELL +S+ G +GKS+ LCPYCYN+PP+ + G C +C HPTC +L++
Sbjct: 700 ELTCPLDNFELLIFSLAGPEGKSFPLCPYCYNSPPF---EAGMPCFLCPHPTCPHSLIAQ 756
Query: 81 GIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
G+ +C +C G LVLD SAPKW++ CN C+ ++++ A K+ + +C
Sbjct: 757 GVCACPEC-SGTLVLDPVSAPKWRLYCNMCNCLVYLPQGAHKISTTRDRCPEC 808
>gi|7510002|pir||T31600 hypothetical protein Y48C3A.r - Caenorhabditis elegans
Length = 335
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 88/168 (52%), Gaps = 43/168 (25%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
+D LFE SF+ L+ TGK S+
Sbjct: 16 VDTLFEASFTTLSDTGKPFSRCGKCRRYMKLVQTKPQRLYCPTCQETYAVPNFKDGVLKV 75
Query: 22 --ELKCPIDDFELLCWSM--GNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQAL 77
+ KCP+DDF+++ + G +++ LCP+C+NNPP+ M +G+GC+ C HP+C ++
Sbjct: 76 IGDHKCPLDDFDVILYQGPGGKLARTFTLCPFCFNNPPFEKMPQGAGCDTCVHPSCQYSI 135
Query: 78 LSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQV 125
S G+ CLQ GGV++LD S PKW++ CNKC ++ +F A KV+V
Sbjct: 136 SSNGVCGCLQDCGGVMLLDTQSHPKWRMTCNKCPSVVGLFEGAIKVKV 183
>gi|302830151|ref|XP_002946642.1| hypothetical protein VOLCADRAFT_79203 [Volvox carteri f.
nagariensis]
gi|300268388|gb|EFJ52569.1| hypothetical protein VOLCADRAFT_79203 [Volvox carteri f.
nagariensis]
Length = 896
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 53/141 (37%), Positives = 79/141 (56%), Gaps = 26/141 (18%)
Query: 19 MSQELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYRDM------------------ 59
+ + L CP+D +ELL +S+ G+ GK+Y LCP+CYNNPP+ +
Sbjct: 666 LYKSLVCPLDGYELLLFSLSGSDGKTYPLCPFCYNNPPFEGVLKVGGWGKGDGEGRKRKG 725
Query: 60 ----KKGSGCNVCTHPTCGQALLSTGIASCLQ--CEGGVLVLDLSSAPKWKICCNKCDII 113
K G C+ CTHPTC +L S G+ C C GG +VLD SAPKW++ CN+C+ +
Sbjct: 726 APGGKAGMPCSTCTHPTCPHSLASNGVFPCPNPGCSGGTVVLDPVSAPKWRLDCNRCNFL 785
Query: 114 IHVFPDAQKVQVCTENNC-DC 133
+++ P+ +V + C DC
Sbjct: 786 MYLPPNLHSAKVLPKETCEDC 806
>gi|195996011|ref|XP_002107874.1| hypothetical protein TRIADDRAFT_49643 [Trichoplax adhaerens]
gi|190588650|gb|EDV28672.1| hypothetical protein TRIADDRAFT_49643 [Trichoplax adhaerens]
Length = 841
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 83/174 (47%), Gaps = 43/174 (24%)
Query: 1 MDQLFEVSFSPLAATGK---------------------------------------AMSQ 21
MD LFEV F+ LA TGK + +
Sbjct: 599 MDHLFEVCFTKLAETGKPFCRCGSCNRYMKLIVAKPSRLYCKTCDQTYSLPQNGTIKLYK 658
Query: 22 ELKCPIDDFELLCWSMGNKG--KSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLS 79
ELKCPIDDFEL+ +S N G K+ LCP CY PY D+ K CN C HPTC +++
Sbjct: 659 ELKCPIDDFELVLFS-ANTGTAKAVPLCPACYTKSPYPDVAKNLMCNQCLHPTCPHSMMQ 717
Query: 80 TGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
I C C+ G +VLD SAPKW++ CNKC + + +A KV V E C C
Sbjct: 718 NRILDCQICDQGSIVLDAPSAPKWRMTCNKCKFFVPLLQNASKVSV-KEETCHC 770
>gi|449498877|ref|XP_004160658.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Cucumis sativus]
Length = 864
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 94/191 (49%), Gaps = 59/191 (30%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE FSPLA +G+A+S+
Sbjct: 593 MDALFEAQFSPLADSGRALSKCGKCLRYMKFISSQPQRLYCGICEEVYYLPQKGTIKLYK 652
Query: 22 ELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYRDM----------------KKGSG 64
EL CP+D+FELL +S+ G +GKS+ LCPYCYN+PP+ + KG G
Sbjct: 653 ELTCPLDNFELLIYSLPGPEGKSFPLCPYCYNSPPFEGINTLYGASKANPSSGTSSKGMG 712
Query: 65 --CNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQK 122
C +C HPTC +L++ G+ +C +C G LVLD SAP WK+ CNKC+ ++ + A +
Sbjct: 713 MPCFMCPHPTCRHSLITQGVCACPEC-SGTLVLDPVSAPNWKLNCNKCNCLVFLPKGAHR 771
Query: 123 VQVCTENNCDC 133
+ + DC
Sbjct: 772 ISTTRDKCADC 782
>gi|449459882|ref|XP_004147675.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Cucumis sativus]
Length = 867
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 94/191 (49%), Gaps = 59/191 (30%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE FSPLA +G+A+S+
Sbjct: 596 MDALFEAQFSPLADSGRALSKCGKCLRYMKFISSQPQRLYCGICEEVYYLPQKGTIKLYK 655
Query: 22 ELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYRDM----------------KKGSG 64
EL CP+D+FELL +S+ G +GKS+ LCPYCYN+PP+ + KG G
Sbjct: 656 ELTCPLDNFELLIYSLPGPEGKSFPLCPYCYNSPPFEGINTLYGASKANPSSGTSSKGMG 715
Query: 65 --CNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQK 122
C +C HPTC +L++ G+ +C +C G LVLD SAP WK+ CNKC+ ++ + A +
Sbjct: 716 MPCFMCPHPTCRHSLITQGVCACPEC-SGTLVLDPVSAPNWKLNCNKCNCLVFLPKGAHR 774
Query: 123 VQVCTENNCDC 133
+ + DC
Sbjct: 775 ISTTRDKCADC 785
>gi|339261980|ref|XP_003367635.1| DNA topoisomerase domain protein [Trichinella spiralis]
gi|316961872|gb|EFV48437.1| DNA topoisomerase domain protein [Trichinella spiralis]
Length = 549
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 53/133 (39%), Positives = 76/133 (57%), Gaps = 17/133 (12%)
Query: 7 VSFSPLAATGKAMSQELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCN 66
+SF PL + KCP+D F+L+ G G + LCPYCY+NPP+ DM+ CN
Sbjct: 309 ISFRPL--------NDAKCPLDGFDLIYCVNGGNGGDHALCPYCYSNPPFEDMRPEQACN 360
Query: 67 VCTHPTCGQALLSTGIASCLQCE--------GGVLVLDLSSAPKWKICCNKCDIIIHVFP 118
CTHPTC + + +A C C G L+LD SAPKW++CCN+C + +F
Sbjct: 361 RCTHPTCPYSSRTLAVAICEYCARTAAKSAFRGSLLLDPGSAPKWQLCCNQCKFKVRIFK 420
Query: 119 DAQKVQVCTENNC 131
A+ V+V T+++C
Sbjct: 421 GAKMVRV-TDDHC 432
>gi|340372491|ref|XP_003384777.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Amphimedon
queenslandica]
Length = 849
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 42/165 (25%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
M++LFE +FS +A+T K +S+
Sbjct: 610 MNELFEATFSSVASTAKLLSRCGKCLRYMTYIPVKPQRLHCKHCDETYSLPQNGSIKLYK 669
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
E+KCP+D FE++ +S G +GK+Y +CPYCY+NPP+ + KG C+ C H +C QA+
Sbjct: 670 EIKCPLDGFEIVIFS-GPRGKTYTVCPYCYSNPPFSTVSKGMSCSTCPHQSCPQAMNQLS 728
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNK--CDIIIHVFPDAQKVQ 124
I C C+ G L+LD SS PKWK+ CN C +++H F V+
Sbjct: 729 IDHCPSCDNGTLLLDPSSGPKWKMYCNSLACPVVLHCFEGVHNVE 773
>gi|359478029|ref|XP_002264970.2| PREDICTED: DNA topoisomerase 3-beta-1-like [Vitis vinifera]
Length = 894
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 96/190 (50%), Gaps = 58/190 (30%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE FSPLA +G+A+S+
Sbjct: 624 MDALFEAQFSPLADSGRALSKCGKCLRYMKYISTQPSRMYCGTCEEVYYLPQKGTIKLYK 683
Query: 22 ELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYR---------------DMKKGSG- 64
EL CP+D+FELL +S+ G +GKS+ LCPYCYN+PP+ + KG+G
Sbjct: 684 ELTCPLDNFELLIFSLAGPEGKSFPLCPYCYNSPPFEGIDTLFGATKTSSTGKLGKGAGM 743
Query: 65 -CNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKV 123
C +C HPTC +L++ G+ +C +C G LVLD SAPKW++ CN C+ ++++ A K+
Sbjct: 744 PCFLCPHPTCPHSLIAQGVCACPEC-SGTLVLDPVSAPKWRLYCNMCNCLVYLPQGAHKI 802
Query: 124 QVCTENNCDC 133
+ +C
Sbjct: 803 STTRDRCPEC 812
>gi|357462899|ref|XP_003601731.1| DNA topoisomerase [Medicago truncatula]
gi|355490779|gb|AES71982.1| DNA topoisomerase [Medicago truncatula]
Length = 1024
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 93/190 (48%), Gaps = 58/190 (30%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE FS L +G+ MS+
Sbjct: 756 MDALFEAQFSALVDSGRIMSKCGKCLRYMKYISVQPSRLYCGTCEEVYDLPQKGTIKLYK 815
Query: 22 ELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYRDMK---------------KGSG- 64
EL CP+D+FELL SM G +GKS+ LCPYCY+NPP+ + KG+G
Sbjct: 816 ELTCPLDNFELLICSMPGPEGKSFPLCPYCYSNPPFEGIDTLINSAKTTTSSKTGKGAGM 875
Query: 65 -CNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKV 123
CN+C HPTC +L+S G+ +C +C G LVLD SAPKW++CCN C+ ++ + A ++
Sbjct: 876 PCNLCPHPTCPNSLVSQGVCACPECSG-TLVLDPVSAPKWRLCCNMCNCLVFLAQGAHRI 934
Query: 124 QVCTENNCDC 133
E +C
Sbjct: 935 STTKERCPEC 944
>gi|307105927|gb|EFN54174.1| hypothetical protein CHLNCDRAFT_53167 [Chlorella variabilis]
Length = 860
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 59/182 (32%), Positives = 90/182 (49%), Gaps = 49/182 (26%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE SFSPLA++GK +S+
Sbjct: 598 MDALFEASFSPLASSGKVLSKCGKCNRFMRLIASRPSRLYCGTCEEVYSMPQGGAIKLYK 657
Query: 22 ELKCPIDDFELLCWSMGN-KGKSYILCPYCYNNPPY-----RDMKKGSGCNVCTHPTCGQ 75
EL CP+D F+LL +S+G GK+ +LCPYCYN+PP+ + + G C+ C HP C
Sbjct: 658 ELSCPLDGFQLLLFSLGGADGKNTVLCPYCYNHPPFLEGVEQGGRAGMPCSQCAHPACRH 717
Query: 76 ALLSTGIASCLQCEG----GVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNC 131
+ G+A+C CEG G+LVLD +P W++ C++C +I + + +V ++
Sbjct: 718 SPARMGVAACPACEGEQQQGMLVLDPVGSPSWRLDCSRCSFLIVLPKNLHSAKVAADSCE 777
Query: 132 DC 133
+C
Sbjct: 778 EC 779
>gi|297826655|ref|XP_002881210.1| DNA topoisomerase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297327049|gb|EFH57469.1| DNA topoisomerase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 865
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 93/189 (49%), Gaps = 60/189 (31%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE FSPLA +G+A+S+
Sbjct: 597 MDALFEAQFSPLADSGRALSKCGKCLRYMKHITAVPPRLFCGTCEEVYYLPQKGTIKLYK 656
Query: 22 ELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYRDM----------------KKGSG 64
EL CP+D+FEL+ +S+ G +GKS+ LCPYCYN+PP+ + K GSG
Sbjct: 657 ELTCPLDNFELVIYSVPGPEGKSFPLCPYCYNSPPFEGIDTLFGASKTPNAPAKTKTGSG 716
Query: 65 --CNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQK 122
C++C HPTC ++ + G+ +C +CEG LVLD S PKWK+ CN C I+ + P+
Sbjct: 717 MPCSLCPHPTCQHSVRNQGVCACPECEG-TLVLDPVSFPKWKLNCNLCSCIV-LLPEGAH 774
Query: 123 VQVCTENNC 131
T N C
Sbjct: 775 RIATTSNRC 783
>gi|356540116|ref|XP_003538536.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Glycine max]
Length = 863
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 87/144 (60%), Gaps = 21/144 (14%)
Query: 6 EVSFSPLAATGKAMSQELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYRDMK---- 60
EV + P T K + +EL CP+D+FELL SM G GKS+ LCPYCY NPP+ ++
Sbjct: 639 EVYYLPQKGTIK-LYKELSCPLDNFELLICSMPGPDGKSFPLCPYCYINPPFEGIETLIN 697
Query: 61 -----------KGSG--CNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICC 107
KG+G CN+C HPTC +L+S G+ +C +C G LVLD SAP+WK+CC
Sbjct: 698 TAKTGTSGKIGKGAGMPCNLCPHPTCPNSLVSQGVCACPEC-SGTLVLDPVSAPRWKLCC 756
Query: 108 NKCDIIIHVFPDAQKVQVCTENNC 131
N C+ ++ + A ++ T++ C
Sbjct: 757 NMCNCLVFLAQGAHRIST-TKDRC 779
>gi|4263718|gb|AAD15404.1| putative DNA topoisomerase III beta [Arabidopsis thaliana]
Length = 836
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 93/189 (49%), Gaps = 60/189 (31%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE FSPLA +G+A+S+
Sbjct: 568 MDALFEAQFSPLADSGRALSKCGKCLRYMKHITAVPPRLFCGTCEEVYYLPQKGTVKLYK 627
Query: 22 ELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYRDM----------------KKGSG 64
EL CP+D+FEL+ +S+ G +GKS+ LCPYCYN+PP+ + K G+G
Sbjct: 628 ELTCPLDNFELVIYSVPGPEGKSFPLCPYCYNSPPFEGIDTLFGASKTPNAPAKTKTGAG 687
Query: 65 --CNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQK 122
C++C HPTC ++ + G+ +C +CEG LVLD S PKWK+ CN C I+ + P+
Sbjct: 688 MPCSLCPHPTCQHSVRNQGVCACPECEG-TLVLDPVSFPKWKLNCNLCSCIV-LLPEGAH 745
Query: 123 VQVCTENNC 131
T N C
Sbjct: 746 RITTTSNRC 754
>gi|42569543|ref|NP_180760.2| DNA topoisomerase III [Arabidopsis thaliana]
gi|330253525|gb|AEC08619.1| DNA topoisomerase III [Arabidopsis thaliana]
Length = 865
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 93/189 (49%), Gaps = 60/189 (31%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE FSPLA +G+A+S+
Sbjct: 597 MDALFEAQFSPLADSGRALSKCGKCLRYMKHITAVPPRLFCGTCEEVYYLPQKGTVKLYK 656
Query: 22 ELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYRDM----------------KKGSG 64
EL CP+D+FEL+ +S+ G +GKS+ LCPYCYN+PP+ + K G+G
Sbjct: 657 ELTCPLDNFELVIYSVPGPEGKSFPLCPYCYNSPPFEGIDTLFGASKTPNAPAKTKTGAG 716
Query: 65 --CNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQK 122
C++C HPTC ++ + G+ +C +CEG LVLD S PKWK+ CN C I+ + P+
Sbjct: 717 MPCSLCPHPTCQHSVRNQGVCACPECEG-TLVLDPVSFPKWKLNCNLCSCIV-LLPEGAH 774
Query: 123 VQVCTENNC 131
T N C
Sbjct: 775 RITTTSNRC 783
>gi|325189814|emb|CCA24294.1| PREDICTED: DNA topoisomerase 3beta1like isoform 1 putative [Albugo
laibachii Nc14]
Length = 928
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 86/204 (42%), Gaps = 85/204 (41%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE +FSPLAATGK +S+
Sbjct: 599 MDALFEATFSPLAATGKPLSKCGKCSRYMRYVHLKPQRLHCPTCNETYSLPQNGSIKLYK 658
Query: 22 ELKCPIDDFELLCWSMGNK----GKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQAL 77
E +CP D FEL+ +S+GN GKSY LCPYCYN+PP+ D GCN C HP+C +L
Sbjct: 659 EYRCPFDQFELVLFSLGNSEKAMGKSYPLCPYCYNHPPFEDTLDKMGCNACLHPSCKHSL 718
Query: 78 LSTGIASC-----------------LQCEG-------------------------GVLVL 95
+ G+ C ++ EG G LVL
Sbjct: 719 MQNGVCPCPGSNPEEIHRATFRKTRIKSEGKPNRKDKEESKIKSDATEHVNTPCNGSLVL 778
Query: 96 DLSSAPKWKICCNKCDIIIHVFPD 119
D++S P WK+ CN C+++I D
Sbjct: 779 DVNSKPNWKLACNICNLLIRFRSD 802
>gi|79323918|ref|NP_001031463.1| DNA topoisomerase III [Arabidopsis thaliana]
gi|51969720|dbj|BAD43552.1| putative DNA topoisomerase III beta [Arabidopsis thaliana]
gi|51969988|dbj|BAD43686.1| putative DNA topoisomerase III beta [Arabidopsis thaliana]
gi|330253526|gb|AEC08620.1| DNA topoisomerase III [Arabidopsis thaliana]
Length = 838
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 93/189 (49%), Gaps = 60/189 (31%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE FSPLA +G+A+S+
Sbjct: 570 MDALFEAQFSPLADSGRALSKCGKCLRYMKHITAVPPRLFCGTCEEVYYLPQKGTVKLYK 629
Query: 22 ELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYRDM----------------KKGSG 64
EL CP+D+FEL+ +S+ G +GKS+ LCPYCYN+PP+ + K G+G
Sbjct: 630 ELTCPLDNFELVIYSVPGPEGKSFPLCPYCYNSPPFEGIDTLFGASKTPNAPAKTKTGAG 689
Query: 65 --CNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQK 122
C++C HPTC ++ + G+ +C +CEG LVLD S PKWK+ CN C I+ + P+
Sbjct: 690 MPCSLCPHPTCQHSVRNQGVCACPECEG-TLVLDPVSFPKWKLNCNLCSCIV-LLPEGAH 747
Query: 123 VQVCTENNC 131
T N C
Sbjct: 748 RITTTSNRC 756
>gi|302792781|ref|XP_002978156.1| hypothetical protein SELMODRAFT_233065 [Selaginella moellendorffii]
gi|300154177|gb|EFJ20813.1| hypothetical protein SELMODRAFT_233065 [Selaginella moellendorffii]
Length = 877
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 92/189 (48%), Gaps = 58/189 (30%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE FSPLA +G+ +S+
Sbjct: 602 MDALFEAHFSPLADSGRPLSKCGKCKRYMKYITLRPSRLYCSTCEEVYPVPQNGSIKLYK 661
Query: 22 ELKCPIDDFELLCWSMGN-KGKSYILCPYCYNNP---PYRD------------MKKGSG- 64
EL CP+D+FEL+ +S+G GKSY LCPYCYN+P P RD G+G
Sbjct: 662 ELACPLDNFELVLFSLGGPDGKSYPLCPYCYNHPLESPARDPSSEATTSSDDQATTGAGM 721
Query: 65 -CNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKV 123
C +C H TC +++ G+ +C +C+G L+LD SAPKW++ CNKC ++++ + KV
Sbjct: 722 PCTMCPHATCRHSVMQQGVCACPECDG-TLILDPISAPKWRLDCNKCSFLVYLPANTHKV 780
Query: 124 QVCTENNCD 132
+ CD
Sbjct: 781 SRSEHDYCD 789
>gi|62319698|dbj|BAD95240.1| putative DNA topoisomerase III beta [Arabidopsis thaliana]
Length = 865
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 93/189 (49%), Gaps = 60/189 (31%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE FSPLA +G+A+S+
Sbjct: 597 MDALFEAQFSPLADSGRALSKCGKCLRYMKHITAVPPRLFCGTCEEVYYLPQKGTVKLYK 656
Query: 22 ELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYRDM----------------KKGSG 64
EL CP+D+FEL+ +S+ G +GKS+ LCPYCYN+PP+ + K G+G
Sbjct: 657 ELICPLDNFELVIYSVPGPEGKSFPLCPYCYNSPPFEGIDTLFGASKTPNAPAKTKTGAG 716
Query: 65 --CNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQK 122
C++C HPTC ++ + G+ +C +CEG LVLD S PKWK+ CN C I+ + P+
Sbjct: 717 MPCSLCPHPTCQHSVRNQGVCACPECEG-TLVLDPVSFPKWKLNCNLCSCIV-LLPEGAH 774
Query: 123 VQVCTENNC 131
T N C
Sbjct: 775 RITTTSNRC 783
>gi|255550676|ref|XP_002516387.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
gi|223544485|gb|EEF46004.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
Length = 865
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 86/146 (58%), Gaps = 20/146 (13%)
Query: 6 EVSFSPLAATGKAMSQELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYR------- 57
EV + P T K + +EL CP+D+FELL +SM G +GK++ LCPYCYNNPP+
Sbjct: 641 EVYYLPQKGTIK-LYKELTCPLDNFELLIFSMAGPEGKTFPLCPYCYNNPPFEGVDTLFG 699
Query: 58 --------DMKKGSG--CNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICC 107
+ KG+G C +C HPTC +L++ G+ +C +C G LVLD SAPKW++ C
Sbjct: 700 ASKNGNFGKLGKGAGMPCFLCPHPTCRHSLIAQGVCACPEC-SGTLVLDPVSAPKWRLYC 758
Query: 108 NKCDIIIHVFPDAQKVQVCTENNCDC 133
N C+ ++ + A ++ E +C
Sbjct: 759 NMCNCLVLLPQGAHRIATTRERCPEC 784
>gi|302765975|ref|XP_002966408.1| hypothetical protein SELMODRAFT_168492 [Selaginella moellendorffii]
gi|300165828|gb|EFJ32435.1| hypothetical protein SELMODRAFT_168492 [Selaginella moellendorffii]
Length = 871
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 64/206 (31%), Positives = 92/206 (44%), Gaps = 75/206 (36%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE FSPLA +G+ +S+
Sbjct: 577 MDALFEAHFSPLADSGRPLSKCGKCKRYMKYITLRPSRLYCSTCEEVYPVPQNGSIKLYK 636
Query: 22 ELKCPIDDFELLCWSMGN-KGKSYILCPYCYNNP---PYRD------------------- 58
EL CP+D+FEL+ +S+G GKSY LCPYCYN+P P RD
Sbjct: 637 ELACPLDNFELVLFSLGGPDGKSYPLCPYCYNHPLESPARDPSSEATTSSDDQASGTAPG 696
Query: 59 ----------MKKGSG--CNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKIC 106
G+G C +C H TC +++ G+ +C +C+G L+LD SAPKW++
Sbjct: 697 DGNPNTRRGRAATGAGMPCTMCPHATCRHSVMQQGVCACPECDG-TLILDPISAPKWRLD 755
Query: 107 CNKCDIIIHVFPDAQKVQVCTENNCD 132
CNKC ++++ + KV + CD
Sbjct: 756 CNKCSFLVYLPANTHKVSRSEHDYCD 781
>gi|224131522|ref|XP_002321105.1| predicted protein [Populus trichocarpa]
gi|222861878|gb|EEE99420.1| predicted protein [Populus trichocarpa]
Length = 837
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 93/190 (48%), Gaps = 58/190 (30%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE FSPLA +G+A S+
Sbjct: 569 MDALFEAQFSPLADSGRAFSKCGKCLRYMKYISSQPSRLYCGTCEEVYYLPQKGTIKLYK 628
Query: 22 ELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYRD---------------MKKGSG- 64
EL CP+D+FELL ++M G +GKS+ LCP CYN+PP+ + KG+G
Sbjct: 629 ELTCPLDNFELLIFAMAGPEGKSFPLCPLCYNSPPFEGIDALFGASKTGSSGMLGKGAGM 688
Query: 65 -CNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKV 123
C +C HPTC +L++ G+ +C +C G LVLD SAPKW++ CN C+ ++ + A ++
Sbjct: 689 PCFLCPHPTCRHSLIAQGVCACPECNG-TLVLDPISAPKWRLYCNMCNCLVLLPQGAHRI 747
Query: 124 QVCTENNCDC 133
E +C
Sbjct: 748 STTREQCPEC 757
>gi|218202402|gb|EEC84829.1| hypothetical protein OsI_31918 [Oryza sativa Indica Group]
Length = 866
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 59/188 (31%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE FSPLA +G+ +S+
Sbjct: 595 MDALFEAQFSPLADSGRLLSKCGKCARYMKYISTQPMRLYCVTCEEVYYLPQNGSIKLYK 654
Query: 22 ELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYRDMKK---------------GSG- 64
E+ CP+D FELL +SM G KS+ LCP+CYN+PP+ + K G+G
Sbjct: 655 EIICPLDGFELLLFSMVGPDAKSFPLCPFCYNSPPFEGIDKLFGALKLDDTGKVGKGAGM 714
Query: 65 -CNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKV 123
C +C HPTC Q++++ G+ +C +C G L+LD SAPKW++ CN+C+ I+ + P A
Sbjct: 715 PCFLCLHPTCKQSMITQGVCACPECT-GTLILDPVSAPKWRLYCNRCNCIV-LLPHAAHK 772
Query: 124 QVCTENNC 131
T+ C
Sbjct: 773 ISTTDKKC 780
>gi|294948596|ref|XP_002785799.1| DNA topoisomerase 3-beta-1, putative [Perkinsus marinus ATCC 50983]
gi|239899907|gb|EER17595.1| DNA topoisomerase 3-beta-1, putative [Perkinsus marinus ATCC 50983]
Length = 850
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 81/177 (45%), Gaps = 45/177 (25%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE +F+ LAATGK MS+
Sbjct: 594 MDHLFESTFTSLAATGKLMSRCGKCRTYMNLIDKKPVRLFCRHCDETYALPQTGSSVKLY 653
Query: 22 -ELKCPIDDFELLCWSM----GNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQA 76
EL CP+D+F+L+ S G K Y LCP CYN+PP+ + K S C C HPTC A
Sbjct: 654 KELTCPLDNFQLVMISYPSTAGGGRKQYPLCPMCYNDPPFPESKPKSSCWECLHPTCKHA 713
Query: 77 LLSTGIASCLQCE-GGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCD 132
L S G+ C Q G L LD S PKWK+ CN C+ + +F D T++ C+
Sbjct: 714 LASVGVCGCPQDSCSGTLCLDAESKPKWKLDCNTCNYQLRLFQDKAHKITVTKDKCE 770
>gi|401401464|ref|XP_003881018.1| DNA topoisomerase, related [Neospora caninum Liverpool]
gi|325115430|emb|CBZ50985.1| DNA topoisomerase, related [Neospora caninum Liverpool]
Length = 924
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
Query: 19 MSQELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALL 78
+ +EL+CP+D+FEL+ ++ GK++ LCP CYN+PP C CTHPTC A+
Sbjct: 731 LYKELRCPLDNFELVLFTQ-KGGKTFPLCPLCYNDPPLEGAVNKMSCVECTHPTCKHAIE 789
Query: 79 STGIASCLQCE-GGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCD 132
+ G+ C Q E G+L LD+ S PKWK+ CN C + + A ++ V T + CD
Sbjct: 790 AVGVLQCPQPECKGILYLDVVSGPKWKLDCNACQYQVKLMEGAHRISV-TSDECD 843
>gi|115479969|ref|NP_001063578.1| Os09g0500600 [Oryza sativa Japonica Group]
gi|113631811|dbj|BAF25492.1| Os09g0500600 [Oryza sativa Japonica Group]
gi|215695029|dbj|BAG90220.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 866
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 59/188 (31%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE FSPLA +G+ +S+
Sbjct: 595 MDALFEAQFSPLADSGRLLSKCGKCARYMKYISTQPMRLYCVTCEEVYYLPQNGSIKLYK 654
Query: 22 ELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYRDMKK---------------GSG- 64
E+ CP+D FELL +SM G KS+ LCP+CYN+PP+ + K G+G
Sbjct: 655 EIICPLDGFELLLFSMVGPDAKSFPLCPFCYNSPPFEGIDKLFGALKLDDTGKVGKGAGM 714
Query: 65 -CNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKV 123
C +C HPTC Q++++ G+ +C +C G L+LD SAPKW++ CN+C+ I+ + P A
Sbjct: 715 PCFLCLHPTCKQSMITQGVCACPECT-GTLILDPVSAPKWRLYCNRCNCIV-LLPHAAHK 772
Query: 124 QVCTENNC 131
T+ C
Sbjct: 773 ISTTDKKC 780
>gi|222641861|gb|EEE69993.1| hypothetical protein OsJ_29901 [Oryza sativa Japonica Group]
Length = 729
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 90/188 (47%), Gaps = 59/188 (31%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE FSPLA +G+ +S+
Sbjct: 458 MDALFEAQFSPLADSGRLLSKCGKCARYMKYISTQPMRLYCVTCEEVYYLPQNGSIKLYK 517
Query: 22 ELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYRDMKK-----------------GS 63
E+ CP+D FELL +SM G KS+ LCP+CYN+PP+ + K G
Sbjct: 518 EIICPLDGFELLLFSMVGPDAKSFPLCPFCYNSPPFEGIDKLFGALKLDDTGKVGKGAGM 577
Query: 64 GCNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKV 123
C +C HPTC Q++++ G+ +C +C G L+LD SAPKW++ CN+C+ I+ + P A
Sbjct: 578 PCFLCLHPTCKQSMITQGVCACPECT-GTLILDPVSAPKWRLYCNRCNCIV-LLPHAAHK 635
Query: 124 QVCTENNC 131
T+ C
Sbjct: 636 ISTTDKKC 643
>gi|384249381|gb|EIE22863.1| prokaryotic type I DNA topoisomerase [Coccomyxa subellipsoidea
C-169]
Length = 866
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 58/191 (30%), Positives = 85/191 (44%), Gaps = 58/191 (30%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE SFSPLA++GK +S+
Sbjct: 600 MDALFEASFSPLASSGKPLSKCGKCARYMKLISVRPSRMYCPTCEEVLNLPQGGSVKLYK 659
Query: 22 ELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYRDM------------------KKG 62
L CP+D++E++ +S+ G K+Y LCP+CYNNPP M K G
Sbjct: 660 GLACPLDNYEIVLFSLTGPDAKTYPLCPFCYNNPPAGAMQNDGSSMRRQVAGPGAGAKPG 719
Query: 63 SGCNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQK 122
C +C H C + L G+ C +C+ G +VLD S PKW++ CN C +I++
Sbjct: 720 MPCTLCPHMGCQHSFLRKGVTPCPECDTGTVVLDPVSGPKWRLDCNLCSFMIYLPETLHA 779
Query: 123 VQVCTENNCDC 133
V++ E +C
Sbjct: 780 VKLSKERCQEC 790
>gi|342186003|emb|CCC95488.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 838
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 57/137 (41%), Positives = 81/137 (59%), Gaps = 13/137 (9%)
Query: 6 EVSFS-PLAATGKAMSQELKCPIDDFEL-LCWSMGNKGKSYILCPYCYNNPPYRDMKKGS 63
EV+++ P T K S KCP+D+FEL +C G GKS+ +CP CYNNPP+ D +
Sbjct: 637 EVTYALPQGGTIKQYSS-YKCPLDNFELVICHVEG--GKSFPICPNCYNNPPFEDTQMRG 693
Query: 64 G-----CNVCTHPTCGQALLSTGIASCL--QCEGGVLVLDLSSAPKWKICCNKCDIIIHV 116
G C+ C HPTC +L + +A C+ +C+G + + SS KWKICCN C ++I +
Sbjct: 694 GRKLMACDECRHPTCSHSLATNYVADCVDQRCDGCMAFVPRSSG-KWKICCNHCTMMILL 752
Query: 117 FPDAQKVQVCTENNCDC 133
P AQ+V V +E C
Sbjct: 753 PPTAQRVYVSSEECSVC 769
>gi|407420057|gb|EKF38435.1| DNA topoisomerase III, putative [Trypanosoma cruzi marinkellei]
Length = 851
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 54/137 (39%), Positives = 81/137 (59%), Gaps = 12/137 (8%)
Query: 6 EVSFS-PLAATGKAMSQELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSG 64
EV++ P T K S KCP+D+FEL+ + + GKS+ +CP CYNNPP+ D++K G
Sbjct: 637 EVTYDLPQGGTIKQYSS-FKCPLDNFELVICHV-DGGKSFPICPNCYNNPPFEDIQKQRG 694
Query: 65 ------CNVCTHPTCGQALLSTGIASCL--QCEGGVLVLDLSSAPKWKICCNKCDIIIHV 116
C+ C HP C +L + +A C+ +C+G + + +S KWKICCN C ++I +
Sbjct: 695 GRQHMACDECRHPVCYHSLATNYVADCVDERCDGCMAFVPRTSG-KWKICCNHCTMMILL 753
Query: 117 FPDAQKVQVCTENNCDC 133
P AQ+V V E +C
Sbjct: 754 PPTAQRVYVSPEECSEC 770
>gi|237838573|ref|XP_002368584.1| DNA topoisomerase III beta-1, putative [Toxoplasma gondii ME49]
gi|211966248|gb|EEB01444.1| DNA topoisomerase III beta-1, putative [Toxoplasma gondii ME49]
Length = 841
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 82/172 (47%), Gaps = 42/172 (24%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE SF+ LA TG A+S+
Sbjct: 585 MDMLFEASFTMLAQTGNALSRCGRCNRYMNLITKRPTRLHCRTCNETYNMPQNGAIKLYK 644
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+D+FEL+ ++ GKS+ LCP CYN+PP C CTHPTC + + G
Sbjct: 645 ELRCPLDNFELVLFTQKG-GKSFPLCPLCYNDPPLEGSVTKMSCVECTHPTCKHGIEAVG 703
Query: 82 IASCLQCE-GGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCD 132
+ C Q + G+L LD+ S PKWK+ CN C + + A K+ V T + CD
Sbjct: 704 VLQCPQPDCKGILYLDVVSGPKWKLDCNACQYQVKLMEGAHKISV-TPDECD 754
>gi|221505540|gb|EEE31185.1| DNA topoisomerase III beta-1, putative [Toxoplasma gondii VEG]
Length = 842
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 82/172 (47%), Gaps = 42/172 (24%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE SF+ LA TG A+S+
Sbjct: 586 MDMLFEASFTMLAQTGSALSRCGRCNRYMNLITKRPTRLHCRTCNETYNMPQNGAIKLYK 645
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+D+FEL+ ++ GKS+ LCP CYN+PP C CTHPTC + + G
Sbjct: 646 ELRCPLDNFELVLFTQKG-GKSFPLCPLCYNDPPLEGSVTKMSCVECTHPTCKHGIEAVG 704
Query: 82 IASCLQCE-GGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCD 132
+ C Q + G+L LD+ S PKWK+ CN C + + A K+ V T + CD
Sbjct: 705 VLQCPQPDCKGILYLDVVSGPKWKLDCNACQYQVKLMEGAHKISV-TPDECD 755
>gi|407853208|gb|EKG06290.1| DNA topoisomerase III, putative [Trypanosoma cruzi]
Length = 852
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 54/137 (39%), Positives = 81/137 (59%), Gaps = 12/137 (8%)
Query: 6 EVSFS-PLAATGKAMSQELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSG 64
EV++ P T K S KCP+D+FEL+ + + GKS+ +CP CYNNPP+ D++K G
Sbjct: 637 EVTYELPQGGTIKQYSS-FKCPLDNFELVICHV-DGGKSFPICPNCYNNPPFEDIQKQRG 694
Query: 65 ------CNVCTHPTCGQALLSTGIASCL--QCEGGVLVLDLSSAPKWKICCNKCDIIIHV 116
C+ C HP C +L + +A C+ +C+G + + +S KWKICCN C ++I +
Sbjct: 695 GRQHMACDECRHPVCYHSLATNYVADCVDERCDGCMAFVPRTSG-KWKICCNHCTMMILL 753
Query: 117 FPDAQKVQVCTENNCDC 133
P AQ+V V E +C
Sbjct: 754 PPTAQRVYVSPEECSEC 770
>gi|71664077|ref|XP_819023.1| DNA topoisomerase III [Trypanosoma cruzi strain CL Brener]
gi|70884306|gb|EAN97172.1| DNA topoisomerase III, putative [Trypanosoma cruzi]
Length = 852
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 54/137 (39%), Positives = 81/137 (59%), Gaps = 12/137 (8%)
Query: 6 EVSFS-PLAATGKAMSQELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSG 64
EV++ P T K S KCP+D+FEL+ + + GKS+ +CP CYNNPP+ D++K G
Sbjct: 637 EVTYELPQGGTIKQYSS-FKCPLDNFELVICHV-DGGKSFPICPNCYNNPPFEDIQKQRG 694
Query: 65 ------CNVCTHPTCGQALLSTGIASCL--QCEGGVLVLDLSSAPKWKICCNKCDIIIHV 116
C+ C HP C +L + +A C+ +C+G + + +S KWKICCN C ++I +
Sbjct: 695 GRQHMACDECRHPVCYHSLATNYVADCVDERCDGCMAFVPRTSG-KWKICCNHCTMMILL 753
Query: 117 FPDAQKVQVCTENNCDC 133
P AQ+V V E +C
Sbjct: 754 PPTAQRVYVSPEECSEC 770
>gi|441620017|ref|XP_004088632.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-beta-1
[Nomascus leucogenys]
Length = 803
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 82/157 (52%), Gaps = 32/157 (20%)
Query: 1 MDQLFEVSFSPLAATGKAMSQELKCPI--------------------DDF--------EL 32
MD+L EVSFSPLAATGK +S+ KC ++F EL
Sbjct: 559 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQKPKHEQGRPQEQGQEEFLLLGRGIQEL 618
Query: 33 LCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTGIASCLQCEGGV 92
G +G+ + +P + G GCN CTHP+C +L GI C++CE GV
Sbjct: 619 EALGAGCRGQVGTVGVPLQGSP----LPPGMGCNECTHPSCQHSLSMLGIGQCVECESGV 674
Query: 93 LVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
LVLD +S PKWK+ CNKC+++ H F +A +V+V +
Sbjct: 675 LVLDPTSGPKWKVACNKCNVVAHCFENAHRVRVSADT 711
>gi|340059110|emb|CCC53485.1| putative DNA topoisomerase III, fragment [Trypanosoma vivax Y486]
Length = 782
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 55/136 (40%), Positives = 81/136 (59%), Gaps = 11/136 (8%)
Query: 6 EVSFS-PLAATGKAMSQELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPY-----RDM 59
EV+++ P T K S KCP+D+FEL+ + + GKS+ +CP CYNNPP+ R
Sbjct: 576 EVTYALPQGGTIKQYSS-YKCPLDNFELVICHI-DGGKSFPICPNCYNNPPFDESIERGG 633
Query: 60 KKGSGCNVCTHPTCGQALLSTGIASCL--QCEGGVLVLDLSSAPKWKICCNKCDIIIHVF 117
+K C+ C HPTC +L +A C+ +C+G + + SS KWKICCN C ++I +
Sbjct: 634 RKVMACDECRHPTCAHSLAKNYVADCIDERCDGCMAFVPRSSG-KWKICCNHCTMMILLP 692
Query: 118 PDAQKVQVCTENNCDC 133
P AQ+V V +E +C
Sbjct: 693 PTAQRVYVSSEECKEC 708
>gi|71756135|ref|XP_828982.1| DNA topoisomerase III [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834368|gb|EAN79870.1| DNA topoisomerase III, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|144583730|gb|ABP01567.1| topoisomerase IIIbeta [Trypanosoma brucei brucei]
gi|261334912|emb|CBH17906.1| DNA topoisomerase III, putative [Trypanosoma brucei gambiense
DAL972]
Length = 841
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 56/137 (40%), Positives = 82/137 (59%), Gaps = 13/137 (9%)
Query: 6 EVSFS-PLAATGKAMSQELKCPIDDFEL-LCWSMGNKGKSYILCPYCYNNPPYRDMKKGS 63
EV+++ P T K S KCP+D+FEL +C G GKS+ +CP CYNNPP+ D +
Sbjct: 637 EVTYALPQGGTIKQYSN-YKCPLDNFELVICHVEG--GKSFPICPNCYNNPPFPDARVQG 693
Query: 64 G-----CNVCTHPTCGQALLSTGIASCL--QCEGGVLVLDLSSAPKWKICCNKCDIIIHV 116
G C+ C HPTC +L + +A C+ +C+G + + +S KWKICCN C ++I +
Sbjct: 694 GRQLMACDECKHPTCYHSLATNYVADCVDPRCDGCMAFVPRTSG-KWKICCNHCTMMILL 752
Query: 117 FPDAQKVQVCTENNCDC 133
P AQ+V V +E +C
Sbjct: 753 PPTAQRVYVSSEECPEC 769
>gi|242045216|ref|XP_002460479.1| hypothetical protein SORBIDRAFT_02g029000 [Sorghum bicolor]
gi|241923856|gb|EER97000.1| hypothetical protein SORBIDRAFT_02g029000 [Sorghum bicolor]
Length = 866
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 90/188 (47%), Gaps = 59/188 (31%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE FSPLA +G+ +S+
Sbjct: 593 MDALFEAQFSPLADSGRLLSKCGKCGRYMKYISTQPMRLYCITCEDVYYLPQNGSIKLYK 652
Query: 22 ELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYRDMKK---------------GSG- 64
E+ CP+D FELL +SM G KS+ LCP+CYN PP+ + K G+G
Sbjct: 653 EIICPLDGFELLLFSMVGPDAKSFPLCPFCYNCPPFEGIDKLFGALKLDDTGKVGKGAGM 712
Query: 65 -CNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKV 123
C +C HPTC Q++++ G+ +C +C G L+LD SAPKW++ CN C+ I+ + P A
Sbjct: 713 PCFLCPHPTCKQSMITQGVCACPEC-SGTLILDPVSAPKWRLYCNMCNCIV-LLPHAAHR 770
Query: 124 QVCTENNC 131
T+ C
Sbjct: 771 ITTTDKKC 778
>gi|398018216|ref|XP_003862289.1| DNA topoisomerase III, putative [Leishmania donovani]
gi|322500518|emb|CBZ35595.1| DNA topoisomerase III, putative [Leishmania donovani]
Length = 867
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 84/154 (54%), Gaps = 30/154 (19%)
Query: 6 EVSFS-PLAATGKAMSQELKCPIDDFEL-LCWSMGNKGKSYILCPYCYNNPPYRDMK--- 60
EV+F+ P T K S KCPID+FEL +C G GKS+ +CP+CYNNPP+ DM+
Sbjct: 638 EVTFALPQGGTIKPYSS-FKCPIDNFELVICHIEG--GKSFPICPHCYNNPPFEDMRPAI 694
Query: 61 ----KGSG---------------CNVCTHPTCGQALLSTGIASCL--QCEGGVLVLDLSS 99
+G G C+ C HPTC +L + + C+ C G + + +
Sbjct: 695 QHHHRGYGGGAAATTAPSTRHMACDECRHPTCEHSLATNYVCDCVDGSCAGSMAFVP-RT 753
Query: 100 APKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
A +WK+CCNKC ++I + P AQ+V V +E +C
Sbjct: 754 AGQWKVCCNKCPMMIKLPPTAQRVYVTSEECPEC 787
>gi|193788457|dbj|BAG53351.1| unnamed protein product [Homo sapiens]
Length = 275
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 64/120 (53%), Gaps = 48/120 (40%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 148 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 207
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG C +LLSTG
Sbjct: 208 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGE---------CSHSLLSTG 258
>gi|357159190|ref|XP_003578369.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Brachypodium
distachyon]
Length = 868
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 90/188 (47%), Gaps = 59/188 (31%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE FSPLA +G+ +S+
Sbjct: 595 MDALFEAQFSPLADSGRLLSKCGKCGRYMKYISTQPMRMYCITCEEVYYLPQNGTIKLYK 654
Query: 22 ELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYR---------------DMKKGSG- 64
E+ CP+D FELL +SM G KS+ LCP CYN+PP+ + KG+G
Sbjct: 655 EIICPLDGFELLLFSMVGPDAKSFPLCPCCYNSPPFEGIDKLFGAIKLDDTGKLGKGAGM 714
Query: 65 -CNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKV 123
C +C HPTC Q++++ G+ +C +C G L+LD SAPKW++ CN C+ ++ + P A
Sbjct: 715 PCFLCPHPTCKQSMITQGVCACPEC-SGTLILDPVSAPKWRLLCNMCNCVV-LLPHAAHR 772
Query: 124 QVCTENNC 131
T+ C
Sbjct: 773 ITTTDKKC 780
>gi|146092141|ref|XP_001470217.1| putative DNA topoisomerase III [Leishmania infantum JPCM5]
gi|134085011|emb|CAM69411.1| putative DNA topoisomerase III [Leishmania infantum JPCM5]
Length = 867
Score = 95.5 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 83/154 (53%), Gaps = 30/154 (19%)
Query: 6 EVSFS-PLAATGKAMSQELKCPIDDFEL-LCWSMGNKGKSYILCPYCYNNPPYRDMK--- 60
EV+F+ P T K S KCPID+FEL +C G GKS+ +CP+CYNNPP+ DM+
Sbjct: 638 EVTFALPQGGTIKPYSS-FKCPIDNFELVICHIEG--GKSFPICPHCYNNPPFEDMRPAI 694
Query: 61 ----KGSG---------------CNVCTHPTCGQALLSTGIASCL--QCEGGVLVLDLSS 99
+G G C+ C HPTC +L + + C+ C G + + +
Sbjct: 695 QHHHRGYGGGAAATTAPSTRHMACDECRHPTCEHSLATNYVCDCVDGSCAGSMAFVP-RT 753
Query: 100 APKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
A +WK+CCNKC ++I + P AQ+V V E +C
Sbjct: 754 AGQWKVCCNKCPMMIKLPPTAQRVYVTFEECPEC 787
>gi|401425068|ref|XP_003877019.1| putative DNA topoisomerase III [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493263|emb|CBZ28548.1| putative DNA topoisomerase III [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 866
Score = 95.5 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 54/153 (35%), Positives = 79/153 (51%), Gaps = 28/153 (18%)
Query: 6 EVSFSPLAATGKAMSQELKCPIDDFEL-LCWSMGNKGKSYILCPYCYNNPPYRDMK---- 60
EV+F+ KCPID+FEL +C G GKS+ +CP CYNNPP+ DM+
Sbjct: 638 EVTFALPQGGAIKQYSSFKCPIDNFELVICHIEG--GKSFPICPQCYNNPPFEDMRPAIQ 695
Query: 61 ---KGSG---------------CNVCTHPTCGQALLSTGIASCL--QCEGGVLVLDLSSA 100
+G G C+ C HPTC +L + + C+ C G + + +A
Sbjct: 696 HHHRGYGGGAAATTAPSTRHMACDECRHPTCEHSLATNYVCDCVDGSCAGSMAFVP-RTA 754
Query: 101 PKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
+WK+CCNKC ++I + P AQ+V V +E +C
Sbjct: 755 GQWKVCCNKCPMMIKLPPTAQRVYVTSEECLEC 787
>gi|294889461|ref|XP_002772824.1| DNA topoisomerase 3-beta-1, putative [Perkinsus marinus ATCC 50983]
gi|239877374|gb|EER04640.1| DNA topoisomerase 3-beta-1, putative [Perkinsus marinus ATCC 50983]
Length = 813
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 82/193 (42%), Gaps = 61/193 (31%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD LFE +F+ LAATGK MS+
Sbjct: 541 MDHLFESTFTSLAATGKLMSRCGKCRTYMNLIDKKPVRLFCRHCDETYALPQTGSSVKLY 600
Query: 22 -ELKCPIDDFELLCWSM----GNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQA 76
EL CP+D+F+L+ S G K Y LCP CYN+PP+ + K S C C HPTC A
Sbjct: 601 KELTCPLDNFQLVMISYPATAGGGRKQYPLCPMCYNDPPFPESKPKSSCWECLHPTCKHA 660
Query: 77 LLSTGIASCLQCE-----------------GGVLVLDLSSAPKWKICCNKCDIIIHVFPD 119
L S G+ + C+ G L LD S PKWK+ CN C+ + +F D
Sbjct: 661 LASVGVRIIIICKFCYGKSRQVCGCPQDSCSGTLCLDAESKPKWKLDCNTCNYQLRLFQD 720
Query: 120 AQKVQVCTENNCD 132
T++ C+
Sbjct: 721 KAHKITVTKDKCE 733
>gi|260101066|gb|ACX31684.1| DNA topoisomerase III beta [Leishmania donovani]
Length = 866
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 56/154 (36%), Positives = 83/154 (53%), Gaps = 30/154 (19%)
Query: 6 EVSFS-PLAATGKAMSQELKCPIDDFEL-LCWSMGNKGKSYILCPYCYNNPPYRDMK--- 60
EV+F+ P K S KCPID+FEL +C G GKS+ +CP+CYNNPP+ DM+
Sbjct: 638 EVTFALPQGGAIKPYSS-FKCPIDNFELVICHIEG--GKSFPICPHCYNNPPFEDMRPAI 694
Query: 61 ----KGSG---------------CNVCTHPTCGQALLSTGIASCL--QCEGGVLVLDLSS 99
+G G C+ C HPTC +L + + C+ C G + + ++
Sbjct: 695 QHHHRGYGGGAAATMAPSTRHMACDECRHPTCEHSLATNYVCDCVDGSCAGSMAFVPRTT 754
Query: 100 APKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
+WK+CCNKC ++I + P AQ+V V +E +C
Sbjct: 755 G-QWKVCCNKCPMMIKLPPTAQRVYVTSEECPEC 787
>gi|157871822|ref|XP_001684460.1| putative DNA topoisomerase III [Leishmania major strain Friedlin]
gi|68127529|emb|CAJ05541.1| putative DNA topoisomerase III [Leishmania major strain Friedlin]
Length = 866
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 56/154 (36%), Positives = 82/154 (53%), Gaps = 30/154 (19%)
Query: 6 EVSFS-PLAATGKAMSQELKCPIDDFEL-LCWSMGNKGKSYILCPYCYNNPPYRDMK--- 60
EV+F+ P K S CPID+FEL +C G GKS+ +CP+CYNNPP+ DM+
Sbjct: 638 EVTFALPQGGAIKPYSS-FTCPIDNFELVICHIEG--GKSFPICPHCYNNPPFEDMRPAI 694
Query: 61 ----KGSG---------------CNVCTHPTCGQALLSTGIASCL--QCEGGVLVLDLSS 99
+G G C+ C HPTC +L + + C+ C G + + +
Sbjct: 695 QHHDRGYGGGAATTMAPSTRHMACDECRHPTCEHSLATNYVCDCVDGSCAGSMAFVP-RT 753
Query: 100 APKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
A +WK+CCNKC ++I + P AQ+V V +E +C
Sbjct: 754 AGQWKVCCNKCPMMIKLPPTAQRVYVTSEECSEC 787
>gi|2114264|dbj|BAA20009.1| topoisomerase-III [Homo sapiens]
Length = 753
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 47/103 (45%), Positives = 57/103 (55%), Gaps = 39/103 (37%)
Query: 1 MDQLFEVSFSPLAATGKAMS---------------------------------------Q 21
MD+L EVSFSPLAATGK +S +
Sbjct: 608 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 667
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSG 64
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKK G
Sbjct: 668 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKAEG 710
>gi|209878332|ref|XP_002140607.1| DNA topoisomerase family protein [Cryptosporidium muris RN66]
gi|209556213|gb|EEA06258.1| DNA topoisomerase family protein [Cryptosporidium muris RN66]
Length = 857
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 19 MSQELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALL 78
+ +ELKCP+DD+ELL ++ K+ ILCP CYN+PP+ + C C HPTC +
Sbjct: 683 LYKELKCPLDDYELLVFNSLRTKKNMILCPRCYNDPPFDSAIQNILCKECPHPTCPHSYN 742
Query: 79 STGIASC--LQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENN 130
S+ I C +C+ GVL LDLSSAP W+I C+ C+ ++ F + +V T N+
Sbjct: 743 SSFIMYCPVEKCKDGVLTLDLSSAPNWRIDCSNCNFVLK-FREKHCHKVSTTND 795
>gi|293331199|ref|NP_001169181.1| uncharacterized protein LOC100383032 [Zea mays]
gi|223975359|gb|ACN31867.1| unknown [Zea mays]
Length = 246
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 80/144 (55%), Gaps = 21/144 (14%)
Query: 6 EVSFSPLAATGKAMSQELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYRDMKK--- 61
+V + P + K + +E+ CP+D FELL +SM G KS+ LCP+CYN PP+ + K
Sbjct: 18 DVYYLPQNGSIK-LYKEIVCPLDGFELLLFSMVGPDAKSFPLCPFCYNCPPFEGIDKLFG 76
Query: 62 --------------GSGCNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICC 107
G C +C HPTC Q++++ G+ +C +C G L+LD SAPKW++ C
Sbjct: 77 ALKLDDTGKVGKGAGMPCFLCPHPTCKQSMITQGVCACPECSG-TLILDPVSAPKWRLYC 135
Query: 108 NKCDIIIHVFPDAQKVQVCTENNC 131
N C+ I+ + P A T+ C
Sbjct: 136 NMCNCIV-LLPHAAHRITTTDKKC 158
>gi|126649305|ref|XP_001388324.1| DNA topoisomerase III beta-1 [Cryptosporidium parvum Iowa II]
gi|32398820|emb|CAD98530.1| DNA topoisomerase III beta-1, probable [Cryptosporidium parvum]
gi|126117418|gb|EAZ51518.1| DNA topoisomerase III beta-1, putative [Cryptosporidium parvum Iowa
II]
Length = 835
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 21 QELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLST 80
+ELKCPIDDFELL + + KGK I CP CYN+PP+ D K+ C C H TC +L ST
Sbjct: 662 KELKCPIDDFELLLF-IDQKGKKSIFCPRCYNDPPFLDAKENMLCKFCPHQTCNFSLKST 720
Query: 81 GIASC--LQCEGGVLVLDLSSAPKWKICCNKCDI 112
+C C G++ +D SS W+ C++C I
Sbjct: 721 FFMACPSQDCRDGIITMDSSSTSDWRFDCSRCSI 754
>gi|399216452|emb|CCF73140.1| unnamed protein product [Babesia microti strain RI]
Length = 810
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 5/104 (4%)
Query: 11 PLAATGKAMSQELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDM--KKGSGCNVC 68
P+ T + + +E+KCP+D+FEL+ + + GKSY LCP CYN+PP+ D K C+ C
Sbjct: 616 PIGGTVR-LFKEIKCPLDNFELVQYQVKG-GKSYTLCPMCYNDPPFEDFSNKSAMNCSKC 673
Query: 69 THPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDI 112
HPTC A+ S +A C +CEG + ++ KW+I CN C +
Sbjct: 674 PHPTCTNAIRSISVAVC-ECEGMLYFDVINQGHKWRILCNNCSV 716
>gi|323508815|dbj|BAJ77301.1| cgd6_2390 [Cryptosporidium parvum]
gi|323509797|dbj|BAJ77791.1| cgd6_2390 [Cryptosporidium parvum]
Length = 482
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 21 QELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLST 80
+ELKCPIDDFELL + + KGK I CP CYN+PP+ D K+ C C H TC +L ST
Sbjct: 309 KELKCPIDDFELLLF-IDQKGKKSIFCPRCYNDPPFLDAKENMLCKFCPHQTCNFSLKST 367
Query: 81 GIASC--LQCEGGVLVLDLSSAPKWKICCNKCDI 112
+C C G++ +D SS W+ C++C I
Sbjct: 368 FFMACPSQDCRDGIITMDSSSTSDWRFDCSRCSI 401
>gi|300175415|emb|CBK20726.2| unnamed protein product [Blastocystis hominis]
Length = 891
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 58/194 (29%), Positives = 81/194 (41%), Gaps = 62/194 (31%)
Query: 1 MDQLFEVSFSPLAATGKAMS---------------------------------------Q 21
MD LFE FS L +GK +S +
Sbjct: 615 MDALFESEFSLLVDSGKPLSRCGICKRFMKYVKNPPPRLYCAQCNVTYNLPPNGTIKLYK 674
Query: 22 ELKCPIDDFELLCWSMGNK----GKSYILCPYCYNNPPYRDM----------KKGSGCNV 67
ELKCP+D F+LL +S GN G +Y LCP+CYNNPP+ M ++ NV
Sbjct: 675 ELKCPLDGFDLLLYSRGNSERFVGVTYPLCPFCYNNPPFDGMSLMVRTAGRVERRGAINV 734
Query: 68 --------CTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPD 119
C C + + +C G ++VLDL S P WK+CCN+C++I +
Sbjct: 735 FIRHANSDCWRTACSRCPNEEDVDGEAKCNG-MMVLDLESRPNWKLCCNQCNMIFRFTAN 793
Query: 120 AQKVQVCTENNCDC 133
VQV + +C
Sbjct: 794 LHDVQVMKKRCEEC 807
>gi|389601917|ref|XP_001566225.2| putative DNA topoisomerase III [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505240|emb|CAM39725.2| putative DNA topoisomerase III [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 866
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 28/153 (18%)
Query: 6 EVSFS-PLAATGKAMSQELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDM----- 59
EV+F+ P T K S CPID+FEL+ + + GKS+ +CP CYNNPP+ ++
Sbjct: 638 EVTFALPQGGTVKPYSG-FTCPIDNFELVVCHI-DGGKSFPICPSCYNNPPFEELPSALQ 695
Query: 60 --KKGSG---------------CNVCTHPTCGQALLSTGIASCL--QCEGGVLVLDLSSA 100
+G+G C+ C HPTC +L + + C+ C G + + +A
Sbjct: 696 HHNRGNGGGATAKAAPSTRHMACDECRHPTCEHSLATNYVCDCVDGSCPGSMAFVP-RTA 754
Query: 101 PKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
+WK+CCN C +++ + P AQ+V V E +C
Sbjct: 755 GQWKVCCNACPMMVKLPPTAQRVYVTAEECAEC 787
>gi|67624109|ref|XP_668337.1| DNA topoisomerase III beta-1 [Cryptosporidium hominis TU502]
gi|54659542|gb|EAL38114.1| DNA topoisomerase III beta-1 [Cryptosporidium hominis]
Length = 482
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 21 QELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLST 80
+ELKCPIDDFELL + + KGK I CP CYN+PP+ D K+ C C H TC +L ST
Sbjct: 309 KELKCPIDDFELLLF-IDQKGKKSIFCPRCYNDPPFLDAKENMLCKFCPHQTCNFSLKST 367
Query: 81 GIASCLQ--CEGGVLVLDLSSAPKWKICCNKCDI 112
+C C G++ +D SS W+ C++C I
Sbjct: 368 FFMACPSQGCRDGIITMDSSSTSDWRFDCSRCTI 401
>gi|383173788|gb|AFG70406.1| Pinus taeda anonymous locus 0_12080_01 genomic sequence
Length = 161
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 21/118 (17%)
Query: 43 SYILCPYCYNNPPYRDMKK--------------GSGCNVCTHPTCGQALLSTGIASCLQC 88
S+ LCPYCYNNPP+ ++ G C++C HPTC +++ + +C +C
Sbjct: 1 SHSLCPYCYNNPPFEGLETLLGDLSVGKANKSGGMPCSLCPHPTCRHSMIKLSVCACPEC 60
Query: 89 EGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC------VQFTSND 140
G L+LD SAPKW++ CNKC+ ++++ ++ ++ E+ +C V F ND
Sbjct: 61 NG-TLLLDPVSAPKWRLDCNKCNCLVYLPQNSHRIVTTDEHCNECGSTILEVDFNKND 117
>gi|361066997|gb|AEW07810.1| Pinus taeda anonymous locus 0_12080_01 genomic sequence
gi|383173784|gb|AFG70404.1| Pinus taeda anonymous locus 0_12080_01 genomic sequence
gi|383173786|gb|AFG70405.1| Pinus taeda anonymous locus 0_12080_01 genomic sequence
gi|383173790|gb|AFG70407.1| Pinus taeda anonymous locus 0_12080_01 genomic sequence
gi|383173792|gb|AFG70408.1| Pinus taeda anonymous locus 0_12080_01 genomic sequence
gi|383173794|gb|AFG70409.1| Pinus taeda anonymous locus 0_12080_01 genomic sequence
gi|383173796|gb|AFG70410.1| Pinus taeda anonymous locus 0_12080_01 genomic sequence
gi|383173798|gb|AFG70411.1| Pinus taeda anonymous locus 0_12080_01 genomic sequence
gi|383173800|gb|AFG70412.1| Pinus taeda anonymous locus 0_12080_01 genomic sequence
Length = 161
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 21/118 (17%)
Query: 43 SYILCPYCYNNPPYRDMKK--------------GSGCNVCTHPTCGQALLSTGIASCLQC 88
S+ LCPYCYNNPP+ ++ G C++C HPTC +++ + +C +C
Sbjct: 1 SHSLCPYCYNNPPFEGLETLLGDLSIGKANKSGGMPCSLCPHPTCRHSMIKLSVCACPEC 60
Query: 89 EGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC------VQFTSND 140
G L+LD SAPKW++ CNKC+ ++++ ++ ++ E+ +C V F ND
Sbjct: 61 NG-TLLLDPVSAPKWRLDCNKCNCLVYLPQNSHRIVTTDEHCNECGSTILEVDFNKND 117
>gi|341892314|gb|EGT48249.1| hypothetical protein CAEBREN_32330 [Caenorhabditis brenneri]
Length = 1276
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 43/116 (37%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
+D LFE SF+ L+ TGK S+
Sbjct: 1149 VDTLFEASFTTLSDTGKPFSRCGKCRRYMKLVQTKPQRLFCPTCQETYSVPNFKDGVLKV 1208
Query: 22 --ELKCPIDDFELLCWSM--GNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTC 73
+ KCP+DDF+++ + G +S+ LCP+C+NNPP+ M GSGC+ CTHP+C
Sbjct: 1209 IGDHKCPLDDFDVILYQGPGGKLARSFTLCPFCFNNPPFEKMPPGSGCDNCTHPSC 1264
>gi|392892255|ref|NP_001254384.1| Protein Y48C3A.14, isoform d [Caenorhabditis elegans]
gi|371571203|emb|CCF23414.1| Protein Y48C3A.14, isoform d [Caenorhabditis elegans]
Length = 163
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 50/74 (67%)
Query: 59 MKKGSGCNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFP 118
M +G+GC+ C HP+C ++ S G+ CLQ GGV++LD S PKW++ CNKC ++ +F
Sbjct: 1 MPQGAGCDTCVHPSCQYSISSNGVCGCLQDCGGVMLLDTQSHPKWRMTCNKCPSVVGLFE 60
Query: 119 DAQKVQVCTENNCD 132
A KV+V + +C+
Sbjct: 61 GAIKVKVDSTRSCE 74
>gi|156084162|ref|XP_001609564.1| DNA topoisomerase [Babesia bovis T2Bo]
gi|154796816|gb|EDO05996.1| DNA topoisomerase, putative [Babesia bovis]
Length = 878
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 11 PLAATGK-AMSQELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDM-KKGSGCNVC 68
PL G + + +KCP+D+FELL + ++ +++ LCP CYN+PP+ + KG GC C
Sbjct: 675 PLPRGGTIKLYKGIKCPLDNFELLQFQ--SRLRAFSLCPMCYNDPPFESIGNKGMGCIDC 732
Query: 69 THPTCGQALLSTGIASCLQCEGGVLVLD-LSSAPKWKICCNKCDIIIHVFPDAQKVQ 124
HPTC + + + C G+L+LD ++ AP WK C+ C + F D K +
Sbjct: 733 AHPTCANSADALTLTRCPGDCDGMLILDIINGAPNWKFFCSSCSYKLQ-FSDITKSR 788
>gi|255073139|ref|XP_002500244.1| predicted protein [Micromonas sp. RCC299]
gi|226515506|gb|ACO61502.1| predicted protein [Micromonas sp. RCC299]
Length = 861
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 51/180 (28%)
Query: 1 MDQLFEVSFSPLAATGKAMS----------------QELKCPIDD--------------- 29
MD LFE SF P ++GK S Q L CP +
Sbjct: 603 MDTLFEASFDPTCSSGKPFSKCGRCLRYMRLVSTRPQRLYCPTQEEVLELPAGTVKLYNN 662
Query: 30 -------FELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNV--CTHPTCGQALLST 80
FELL + G++ +Y +CP+C+N+PP+ + + V HP + +
Sbjct: 663 RECQLCGFELLLYQNGDR--TYPMCPWCFNHPPFVGGSRPTKGLVSGAPHPRAHPIVDAL 720
Query: 81 GIASCLQC---------EGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNC 131
+ C +C EGG L+L+ P+WK C C +++ + +V V + C
Sbjct: 721 VVCPCPECGEDDKLKGREGGWLMLEPVGGPRWKFVCTGCALVVKLNDSVHRVTVDKLDVC 780
>gi|145347645|ref|XP_001418273.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578502|gb|ABO96566.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 863
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 17/119 (14%)
Query: 25 CPIDDFELLCWSMGNKGKSYILCPYCYNNPPY------RDMKKGSGCNVCTHPTCGQALL 78
C I FELL S G++Y LCP+C+N+PP+ + + +GS HP
Sbjct: 686 CAICGFELLIVSQKGTGRAYPLCPFCFNHPPFEGAPRIKALLRGS-----PHPREHPVAD 740
Query: 79 STGIASCLQCEG----GVLVLDLSSAPKWKICCNK--CDIIIHVFPDAQKVQVCTENNC 131
+++C +C GVL+LD ++ K+ C+ CD+++ + P ++ V + C
Sbjct: 741 DVSVSTCPECAASNRPGVLMLDPAATSPGKLYCSSAACDVLVRLPPSVKRSAVSHDAEC 799
>gi|296478358|tpg|DAA20473.1| TPA: topoisomerase (DNA) III beta [Bos taurus]
Length = 734
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 42/89 (47%), Gaps = 41/89 (46%)
Query: 1 MDQLFEVSFSPLAATGKAMS---------------------------------------Q 21
MD+L EVSFSPLAATGK +S +
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSY--ILCP 48
EL+CP+DDFEL+ WS G++GKS LCP
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSSEGELCP 691
>gi|412993300|emb|CCO16833.1| predicted protein [Bathycoccus prasinos]
Length = 949
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 34/139 (24%)
Query: 25 CPIDDFELLCWSMGNKGKSYILCPYCYNNPP-YRDMKKGSGCNVCTHPTCGQALLSTGIA 83
C I DFEL + + ++Y CP+CYN+PP + SG C H + IA
Sbjct: 749 CEICDFELSIYETSDGERAYPFCPFCYNHPPDFGTSSSKSGG--CPHSVLHPIVSERAIA 806
Query: 84 SCLQCEGGV-----------------------------LVLD--LSSAPKWKICCNKCDI 112
C CE L+LD L +W++ C KCD+
Sbjct: 807 PCPNCEKETAKDPYYLANATLGAAGSSSTAASVVSLPQLLLDPILRKGGRWRLNCTKCDL 866
Query: 113 IIHVFPDAQKVQVCTENNC 131
I+ + +KV+V E+ C
Sbjct: 867 IVGLPKGLKKVEVSDEHEC 885
>gi|303285318|ref|XP_003061949.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456360|gb|EEH53661.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 862
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 49/189 (25%), Positives = 77/189 (40%), Gaps = 56/189 (29%)
Query: 1 MDQLFEVSFSPLAATGKAMS----------------QELKCPIDD--------------- 29
MD LFE FSP A+T + S Q L C +
Sbjct: 605 MDSLFEAHFSPSASTERPFSKCGSCCRYLKLVTTTPQRLYCATQEAVYDLPPGVVKLYHG 664
Query: 30 -------FELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGC-----NVCTHPTCGQAL 77
FELL + G++ +Y LCPYC+N+PP M G+ + C HP+ +
Sbjct: 665 RECVLCGFELLLLTSGDR--TYPLCPYCFNHPP-TGMGHGARAPRRLVSGCPHPSAHPIV 721
Query: 78 LSTGIASCLQC---EGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVC-TENNCD- 132
C +C + VL+++ + K+ C++C +++ F + +VC TE C
Sbjct: 722 AELSTGPCPECDPDDDAVLLVEPVGGARHKLVCSECTLLVK-FSEELTHKVCATEYECGG 780
Query: 133 ----CVQFT 137
CV+ T
Sbjct: 781 CGGPCVEVT 789
>gi|118383692|ref|XP_001025000.1| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|89306767|gb|EAS04755.1| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 1386
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 25 CPIDDFELLCWSMGNKG--KSYILCPYCYNNPP----YRDMKK--GSGCNVCTHPTCGQA 76
CPID F+L+ KG K + +CP C+ P Y +K + CN+C++ +C +
Sbjct: 926 CPIDGFQLVLIESTVKGNTKRFTICPLCFQKTPELENYSSEEKYQRTSCNLCSNRSCQFS 985
Query: 77 LLSTGIASCLQC---EGGVLVLDLSSAPKWKICCNKC 110
+++ I C C +GG LVLD + + CN C
Sbjct: 986 MVNNEIGPCPHCKYEKGGRLVLDWPDNNNYTMTCNAC 1022
>gi|428178584|gb|EKX47459.1| hypothetical protein GUITHDRAFT_69656 [Guillardia theta CCMP2712]
Length = 807
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 50/183 (27%), Positives = 67/183 (36%), Gaps = 53/183 (28%)
Query: 1 MDQLFEVSFSPLAATGKAMS----------------QELK-------------------- 24
MD LFE SFSPL A GK S Q L
Sbjct: 610 MDTLFEASFSPLTAGGKPWSKCGLSNRYLQLIQSKPQRLYNKNTEQVYNLPQGGSFKLWG 669
Query: 25 ---CPID----DFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQAL 77
CP++ + L G +SY LCP CYNNP S + T C A
Sbjct: 670 GRVCPVEGCGFELSLFVVGAGKDQRSYPLCPNCYNNPRPEWGPAPSSKGLMTE--CPHAD 727
Query: 78 LSTGIASCLQCE----GGVLVLDLSSAP-KWKICCNKCDIIIHVFPD--AQKVQVCTENN 130
+A C+ GV +LD SAP W++ + + ++ FP K+ V +E +
Sbjct: 728 FHPVVAKLTLCDDEETNGVFILDPGSAPNNWRLVSTRSNFML-TFPSDVVHKLTVLSETD 786
Query: 131 CDC 133
C
Sbjct: 787 PAC 789
>gi|118374593|ref|XP_001020484.1| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|89302251|gb|EAS00239.1| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 1049
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 27/133 (20%)
Query: 24 KCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNV--------------CT 69
+CP+ +F++L + +KG SY +CP CYNNPPY + S N C
Sbjct: 669 RCPLCNFQVLEVTT-DKGISYNICPSCYNNPPYEQDIENSNANSEDSNFKKTSMPCYKCI 727
Query: 70 HPTCGQA--LLSTGIASCLQCEGGVLVLDLSSAPKWKICCNK---CDI-------IIHVF 117
+ C + L + + +C C + + + K I C K CD I+ +F
Sbjct: 728 NKNCSLSGGLKNISLYNCPCCNSPIQIRETKKDKKQFIGCTKYPDCDWSVFLPKDILQIF 787
Query: 118 PDAQKVQVCTENN 130
P +Q+ Q C ENN
Sbjct: 788 PTSQECQSCKENN 800
>gi|145527750|ref|XP_001449675.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417263|emb|CAK82278.1| unnamed protein product [Paramecium tetraurelia]
Length = 949
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 24 KCPIDDFELL-CWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTGI 82
+CP D FELL C S + + +LCP C+++ P ++ + CN+C + C ++ S +
Sbjct: 689 RCPFDKFELLFCTSNKSPFNTTLLCPKCFSSSPLVTSEQCT-CNICPNVDCEKSKESRMV 747
Query: 83 ASCLQCEGGVLVLDLSSAPKWKIC--CNKCDIIIHVFPDAQKVQVCTENNC 131
C C+ G L+L+ + +IC CN+C + + P +V + T+N C
Sbjct: 748 GKCKSCKIGELILEPFISKGQQICLSCNECWCLYQLVPAVVQVDI-TKNAC 797
>gi|440294370|gb|ELP87387.1| hypothetical protein EIN_096440 [Entamoeba invadens IP1]
Length = 704
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 17 KAMSQELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQA 76
K + Q CP+ F L+ + NK + CP CY+ + M+K C CT+ +C +
Sbjct: 560 KILEQPTTCPLCHFGLV--QVKNKTTTETFCPKCYSTQN-KFMRKPETCVGCTNASCPYS 616
Query: 77 LLSTGIASCLQCEG---GVLVLDLSSAPKWKICCNKC 110
L ST + CL+C G+ L+ K +I C+ C
Sbjct: 617 LPSTMVMPCLKCSRTKIGIYTLN-PLDKKSRIVCDSC 652
>gi|118385846|ref|XP_001026048.1| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|89307815|gb|EAS05803.1| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 1374
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 12 LAATGK-AMSQELKCPIDDFELLCW-SMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCT 69
+ + GK ++ E KCP D ++++ + S+ S+ +CP CY P + + + C++CT
Sbjct: 1181 IPSNGKYRLAGEKKCPYDKYQVIFFTSLHTPNVSFEVCPKCYTESPNMESDQVT-CSICT 1239
Query: 70 HPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKC 110
+ C ++ S + C C+ G +V++ A K CN+C
Sbjct: 1240 NEECKLSMNSRFLKECQICKMGDIVIEPQVAQKLAAMCNEC 1280
>gi|224013088|ref|XP_002295196.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969158|gb|EED87500.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 1417
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 46/187 (24%), Positives = 70/187 (37%), Gaps = 62/187 (33%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ---------------------ELK------CPID--DFE 31
MD LF SF+ L GK ++ ELK CP+ +FE
Sbjct: 1151 MDILFGSSFAQLQDVGKPFTRCGFTRRYLQFITGPPPLPIGGELKQWTGRHCPVVGCNFE 1210
Query: 32 LLCWSMGNKGKSYILCPYCYNNP-----------------------PYRDMKKGSGCNVC 68
L +S+G +++ LCP C+NNP R +++ +G N+C
Sbjct: 1211 LCLYSVGAPARTFPLCPNCFNNPRPEWGPVPGENAVAKPGEEDDEAKERSIRRLAGKNIC 1270
Query: 69 THPTCG--QALLSTGIASCLQCEGGVLVLDLSSAP--------KWKICCNKCDIIIHVFP 118
G L+ S GGVL+LD P KW++ + I+H+
Sbjct: 1271 RECPHGDKHPLIEDMTVSPDPDSGGVLILDPHLGPKLTFLMVSKWRLVSTREPTIVHLPK 1330
Query: 119 DAQKVQV 125
KV +
Sbjct: 1331 SIDKVTI 1337
>gi|67473767|ref|XP_652633.1| DNA topoisomerase III [Entamoeba histolytica HM-1:IMSS]
gi|56469504|gb|EAL47247.1| DNA topoisomerase III, putative [Entamoeba histolytica HM-1:IMSS]
gi|449707795|gb|EMD47388.1| DNA topoisomerasebeta-1, putative [Entamoeba histolytica KU27]
Length = 840
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 18 AMSQELKC-PIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQA 76
+ SQ+ KC PI FE++ S K ++CP CYN + S C C++P C +
Sbjct: 653 SYSQQTKCCPICKFEIIMTSSLKSTKKEMVCPGCYNEKNQFMKQDHSSCLQCSNPECKLS 712
Query: 77 LLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKV 123
T C C GGV+ L S KW CN CD I + +K
Sbjct: 713 YERTKTCLCSVC-GGVMCLS-SLQNKWSCFCNTCDSHIEWIDNVKKA 757
>gi|397641070|gb|EJK74455.1| hypothetical protein THAOC_03864, partial [Thalassiosira oceanica]
Length = 948
Score = 43.1 bits (100), Expect = 0.042, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 21 QELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGS---GCNVCTHPTC 73
Q CPI F++L + N G++ CP CYNNPP S C+ CTH +C
Sbjct: 781 QPTSCPICQFQVL--TCENDGRNSQFCPNCYNNPPANHGGSPSLEFQCSSCTHRSC 834
>gi|167393819|ref|XP_001740725.1| DNA topoisomerase 3-beta-1 [Entamoeba dispar SAW760]
gi|165895052|gb|EDR22857.1| DNA topoisomerase 3-beta-1, putative [Entamoeba dispar SAW760]
Length = 840
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 18 AMSQELKC-PIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQA 76
+ SQ+ KC PI FE + S K ++CP CYN ++ S C C++P C +
Sbjct: 653 SYSQQTKCCPICKFETIMTSSLKSTKKEMVCPGCYNEKNQFMKQEHSSCLQCSNPECKLS 712
Query: 77 LLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCD 111
T C C GGV+ L S KW CN CD
Sbjct: 713 YERTKTCLCSVC-GGVMCLS-SLQNKWSCFCNTCD 745
>gi|407034342|gb|EKE37171.1| DNA topoisomerase domain containing protein [Entamoeba nuttalli
P19]
Length = 840
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 18 AMSQELKC-PIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQA 76
+ SQ+ KC PI FE++ S K ++CP CYN ++ S C C +P C +
Sbjct: 653 SYSQQTKCCPICKFEIIMTSSLKSTKKEMVCPGCYNEKNQFMKQEHSSCLQCCNPECKLS 712
Query: 77 LLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKV 123
T C C GGV+ L S KW CN CD I + +K
Sbjct: 713 YERTKTCLCSVC-GGVMCLS-SLQNKWSCFCNTCDSHIEWIDNVKKA 757
>gi|330804855|ref|XP_003290405.1| hypothetical protein DICPUDRAFT_37309 [Dictyostelium purpureum]
gi|325079456|gb|EGC33055.1| hypothetical protein DICPUDRAFT_37309 [Dictyostelium purpureum]
Length = 831
Score = 42.0 bits (97), Expect = 0.082, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 25 CPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQA 76
CP+ ++++ K +Y +CP C N PP+ D +K C CT+ C A
Sbjct: 694 CPLCSYQVVTVYNQEKDYTYTICPKCRNKPPFPDKQKPFHCFQCTNTDCSLA 745
>gi|219122509|ref|XP_002181586.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406862|gb|EEC46800.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1009
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 23 LKCPIDDFELL--CWSMGNKGKSYILCPYCYNNPPYRDMKKGSG-----CNVCTHPTCGQ 75
+KCPI F+++ G +G Y +CP C+++PP D S C C HPTC
Sbjct: 770 VKCPICQFQVIRILRGEGYEGNGYHVCPKCFSDPP-SDHGGASNAGDFRCFACQHPTCAL 828
Query: 76 A 76
A
Sbjct: 829 A 829
>gi|308805310|ref|XP_003079967.1| DNA topoisomerase III, putative (ISS) [Ostreococcus tauri]
gi|116058424|emb|CAL53613.1| DNA topoisomerase III, putative (ISS), partial [Ostreococcus tauri]
Length = 387
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 48 PYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICC 107
P N P + + +GS + HP +S L GGVL+LD S++ + K+ C
Sbjct: 31 PSLPNAPRVKALLRGSP-HPLEHPVADAVAVSPCPECVLSTAGGVLMLDPSASAQDKLHC 89
Query: 108 NKCDIIIHVFPDAQKVQVCTENNC 131
+KCD+ + + + ++ V E C
Sbjct: 90 SKCDVSVRLPREVRRASVSDEAEC 113
>gi|322780207|gb|EFZ09843.1| hypothetical protein SINV_16440 [Solenopsis invicta]
Length = 100
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/21 (80%), Positives = 20/21 (95%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ 21
MDQLFEVSFSPL+A+GKA S+
Sbjct: 38 MDQLFEVSFSPLSASGKAHSR 58
>gi|290980003|ref|XP_002672722.1| predicted protein [Naegleria gruberi]
gi|284086301|gb|EFC39978.1| predicted protein [Naegleria gruberi]
Length = 1015
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 11 PLAATGKAMSQELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPY-----RDMKKGSGC 65
PL + + S E CPI +F++L + K SY LCP+C+NNPP G C
Sbjct: 677 PLPSKSEYESIEDVCPICNFQILNI-ITQKNTSYKLCPHCFNNPPEIENSNESFANGFKC 735
Query: 66 NVCTHPTCGQALLSTGIAS-CLQCEGGVLVLDLSSAPKWKICC 107
CT C + + C +C ++V + I C
Sbjct: 736 FNCTFTGCKYSRKKDAVVRKCQKCSNNLVVRQRKNDTSLYIGC 778
>gi|426247933|ref|XP_004017724.1| PREDICTED: DNA topoisomerase 3-beta-1 [Ovis aries]
Length = 709
Score = 39.3 bits (90), Expect = 0.49, Method: Composition-based stats.
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 1 MDQLFEVSFSPLAATGKAMSQELKC 25
MD+L EVSFSPLAATGK +S+ KC
Sbjct: 579 MDELMEVSFSPLAATGKPLSRCGKC 603
>gi|452823186|gb|EME30198.1| DNA topoisomerase III alpha [Galdieria sulphuraria]
Length = 853
Score = 39.3 bits (90), Expect = 0.50, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 27/127 (21%)
Query: 24 KCPIDDFELLCWSMGNKGKSYILCPYCY------NNPPYRDMKKGSGC---NVC------ 68
KC ID FEL+ W + + G+ ++CP C+ N + G GC + C
Sbjct: 674 KCSIDSFELVTW-VSSWGRPLLICPKCFLDSSTDTNFKEPEWYPGLGCTQLSTCCSLSCP 732
Query: 69 -------THPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQ 121
T C Q + T + L C G VL LS ++ CN+C + F
Sbjct: 733 WRQWHQNTIGLCAQCVQQTEVNKSLFCPG---VLFLSPRAPVQVYCNRCSFSLK-FSQGS 788
Query: 122 KVQVCTE 128
VQV E
Sbjct: 789 VVQVGLE 795
>gi|159478116|ref|XP_001697150.1| hypothetical protein CHLREDRAFT_138607 [Chlamydomonas reinhardtii]
gi|158274624|gb|EDP00405.1| predicted protein [Chlamydomonas reinhardtii]
Length = 644
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 1 MDQLFEVSFSPLAATGKAMSQELKC 25
MD LFE SFSPLA++GK +S+ KC
Sbjct: 605 MDSLFEASFSPLASSGKPLSKCGKC 629
>gi|298709983|emb|CBJ31703.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 759
Score = 38.1 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 11 PLAATGKAMSQ--ELKCPIDDFE-------LLCWSMGN--KGKSYILCPYCYNNPPYRDM 59
PL GK Q E +CP+ F+ +L S GN G Y +CPYC+NN P
Sbjct: 471 PLPHKGKLTKQDPEFECPLCHFQARFLHVLVLSVSTGNDYTGSGYTVCPYCFNNAPAAHG 530
Query: 60 KKGSG---CNVCT 69
+G C +C+
Sbjct: 531 GEGQSQFRCFMCS 543
>gi|209875815|ref|XP_002139350.1| DNA topoisomerase family protein [Cryptosporidium muris RN66]
gi|209554956|gb|EEA05001.1| DNA topoisomerase family protein [Cryptosporidium muris RN66]
Length = 843
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCG 74
+ +CP ++++ K + +CP+C+NNPP C +C+HPTC
Sbjct: 786 DFRCPYCKYQVIKLENILTKKKHFICPFCFNNPPREYSCVELRCFMCSHPTCS 838
>gi|348681919|gb|EGZ21735.1| hypothetical protein PHYSODRAFT_313807 [Phytophthora sojae]
Length = 2476
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 61 KGSGCNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAP 101
+ GC +C T + S+GIASCL C G + S+AP
Sbjct: 1278 RSQGCTICPAGTYNPSAASSGIASCLSCPSGFMCTSGSTAP 1318
>gi|166240582|ref|XP_643754.2| DNA topoisomerase III [Dictyostelium discoideum AX4]
gi|74818660|sp|Q8T2T7.1|TOP3_DICDI RecName: Full=DNA topoisomerase 3; AltName: Full=DNA topoisomerase
III
gi|165988670|gb|EAL69909.2| DNA topoisomerase III [Dictyostelium discoideum AX4]
Length = 828
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 18 AMSQELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCT 69
+M CPI +++L KSY +CP C N+PP KK C CT
Sbjct: 700 SMGVPQNCPICQYQVLSVRNPINDKSYTICPKCRNSPPDPIHKKPFHCFQCT 751
>gi|440291485|gb|ELP84754.1| DNA topoisomerase 3-beta-1, putative [Entamoeba invadens IP1]
Length = 853
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 23 LKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTGI 82
+ CPI +FE + + + K ++CP CYN+ + SGC C +P C + T +
Sbjct: 656 VSCPICNFETVMTTTKDFSKKELICPNCYNSKNDYMAEDHSGCLNCMNPKCKFSREYTKV 715
Query: 83 ASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQV 125
C C GG + L L CC C+ I D +K +
Sbjct: 716 CLCSVC-GGEMCLSLLQNKYSCFCCT-CESHIEWSADVKKATI 756
>gi|189242373|ref|XP_971189.2| PREDICTED: similar to phd finger protein [Tribolium castaneum]
Length = 2284
Score = 36.6 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 21/104 (20%)
Query: 20 SQELKCPIDDFELLCWS-----------MGNKGKSYILCPYCY--NNPPYRDMKKGSGCN 66
S++L+ I+ FEL CW +G + ++C C ++ +M CN
Sbjct: 187 SEQLERVIEQFELCCWDKIQSILRNEEGLGIEYDENVICDVCRSPDSEEGNEMVFCDSCN 246
Query: 67 VCTHPTC-GQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNK 109
+C H C G + G C C LS PK +C NK
Sbjct: 247 ICVHQACYGITRIPEGQWLCCTCH-------LSKRPKCVLCPNK 283
>gi|270016164|gb|EFA12612.1| hypothetical protein TcasGA2_TC006853 [Tribolium castaneum]
Length = 2272
Score = 36.2 bits (82), Expect = 4.2, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 21/104 (20%)
Query: 20 SQELKCPIDDFELLCWS-----------MGNKGKSYILCPYCY--NNPPYRDMKKGSGCN 66
S++L+ I+ FEL CW +G + ++C C ++ +M CN
Sbjct: 187 SEQLERVIEQFELCCWDKIQSILRNEEGLGIEYDENVICDVCRSPDSEEGNEMVFCDSCN 246
Query: 67 VCTHPTC-GQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNK 109
+C H C G + G C C LS PK +C NK
Sbjct: 247 ICVHQACYGITRIPEGQWLCCTCH-------LSKRPKCVLCPNK 283
>gi|157109809|ref|XP_001650834.1| set domain protein [Aedes aegypti]
gi|108878936|gb|EAT43161.1| AAEL005378-PA [Aedes aegypti]
Length = 1458
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 11/83 (13%)
Query: 34 CWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTGIASCLQCEGGVL 93
C+ NKG S +C Y +R+M K SGCN H TC + E V
Sbjct: 538 CYQQRNKGFSCPICHRAYRAAAHREMVKCSGCNKFVHSTCDP-----------EAELTVY 586
Query: 94 VLDLSSAPKWKICCNKCDIIIHV 116
+ P ++ CN C +H
Sbjct: 587 HAKKENNPDYEYLCNPCKASLHT 609
>gi|342183642|emb|CCC93122.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 1103
Score = 35.8 bits (81), Expect = 5.8, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 58 DMKKGSGCNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKI-----CCNKC 110
D K+ S C P C A++ G+ S + GG+L +SS W++ C+KC
Sbjct: 568 DWKRISMCGSVPPPQCSSAVVYVGVGSAVLLSGGLLEGSVSSGSVWRVDYVSGLCSKC 625
>gi|170050214|ref|XP_001859681.1| set domain protein [Culex quinquefasciatus]
gi|167871729|gb|EDS35112.1| set domain protein [Culex quinquefasciatus]
Length = 2934
Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 34 CWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTC-GQALLSTGIASCLQCEGGV 92
C+ NKG S +C Y +R+M K SGCN H TC +A LS V
Sbjct: 412 CYQQRNKGFSCPICHRAYRAAAHREMVKCSGCNKFVHSTCDAEADLS------------V 459
Query: 93 LVLDLSSAPKWKICCNKCDIIIH 115
+ P ++ C+ C IH
Sbjct: 460 YHAKKETNPDYEYLCSPCKTAIH 482
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.137 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,344,187,152
Number of Sequences: 23463169
Number of extensions: 91847816
Number of successful extensions: 151891
Number of sequences better than 100.0: 263
Number of HSP's better than 100.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 151314
Number of HSP's gapped (non-prelim): 458
length of query: 141
length of database: 8,064,228,071
effective HSP length: 105
effective length of query: 36
effective length of database: 9,895,562,622
effective search space: 356240254392
effective search space used: 356240254392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 71 (32.0 bits)