BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8716
(141 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O95985|TOP3B_HUMAN DNA topoisomerase 3-beta-1 OS=Homo sapiens GN=TOP3B PE=1 SV=1
Length = 862
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 104/168 (61%), Gaps = 39/168 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHP+C +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTEN 129
I C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V +
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAHRVRVSADT 770
>sp|Q9Z321|TOP3B_MOUSE DNA topoisomerase 3-beta-1 OS=Mus musculus GN=Top3b PE=2 SV=1
Length = 862
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 106/175 (60%), Gaps = 41/175 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------- 21
MD+L EVSFSPLAATGK +S+
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYK 662
Query: 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHPTC +L G
Sbjct: 663 ELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPTCQHSLSMLG 722
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTE--NNCDCV 134
I C++CE GVLVLD +S PKWK+ CN C+++ H F +A +V+V + N C+
Sbjct: 723 IGQCVECENGVLVLDPTSGPKWKVACNTCNVVAHCFENAHRVRVSADTCNTCEAA 777
>sp|O96651|TOP3B_DROME DNA topoisomerase 3-beta OS=Drosophila melanogaster GN=Top3beta
PE=2 SV=2
Length = 875
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 93/163 (57%), Gaps = 38/163 (23%)
Query: 1 MDQLFEVSFSPLAATGKAMSQ--------------------------------------E 22
MD LFEVSFSPLA +GKA S+ E
Sbjct: 598 MDALFEVSFSPLAESGKAHSRCGKCRRYMKYIQTKPARLHCSHCDETYALPIGNVKVYRE 657
Query: 23 LKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTGI 82
KCP+DDF+LL +S G KG+SY CPYCYN+PP+ DM GCN CT+ C +L + GI
Sbjct: 658 FKCPLDDFDLLAFSTGVKGRSYPFCPYCYNHPPFSDMPHLGGCNTCTNANCPHSLNTLGI 717
Query: 83 ASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQV 125
+SC++C GVLVLD + AP WK+ CN+CD+II+ F A K+ V
Sbjct: 718 SSCVECPTGVLVLDCTLAPTWKLGCNRCDVIINCFKGATKITV 760
>sp|Q8T2T7|TOP3_DICDI DNA topoisomerase 3 OS=Dictyostelium discoideum GN=top3 PE=3 SV=1
Length = 828
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 18 AMSQELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCT 69
+M CPI +++L KSY +CP C N+PP KK C CT
Sbjct: 700 SMGVPQNCPICQYQVLSVRNPINDKSYTICPKCRNSPPDPIHKKPFHCFQCT 751
>sp|Q9W0T1|NU301_DROME Nucleosome-remodeling factor subunit NURF301 OS=Drosophila
melanogaster GN=E(bx) PE=1 SV=2
Length = 2669
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 49 YCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTGIAS-------CLQCEGGVLVLDLSSA- 100
YC PY D K GC++C++ G + T AS C+ C+ L +
Sbjct: 2441 YCICRTPYDDTKFYVGCDLCSNWFHGDCVSITEEASKKLSEFICIDCKRARETQQLYCSC 2500
Query: 101 ------PKWKICCNKCDIIIH 115
++ ICC+KC H
Sbjct: 2501 RQPYDESQFYICCDKCQDWFH 2521
>sp|Q58598|Y1198_METJA Uncharacterized protein MJ1198 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1198 PE=1 SV=1
Length = 761
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 42/115 (36%), Gaps = 25/115 (21%)
Query: 23 LKCPIDDFELLCWSMGNKGKSYILCPYCYNN------PPYRDMKKGSGCNVCTHPTCGQA 76
+KCPI C G K Y CP C P + MK+ S T+
Sbjct: 3 VKCPI------CDGTGKKVVKYKTCPVCEGTGFIDEFSPKQHMKRVS--KRATYD----- 49
Query: 77 LLSTGIASCLQCEGGVLV-----LDLSSAPKWKICCNKCDIIIHVFPDAQKVQVC 126
L G C +C+G V D + C++C II +PD + +C
Sbjct: 50 -LDYGEIPCPKCKGTGKVPVYAKCDFCGGSGKVVKCDRCGAIIGKYPDFKDRTLC 103
>sp|Q5UPH3|YR097_MIMIV Uncharacterized protein R97 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R97 PE=4 SV=1
Length = 279
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 55 PYRDMKKGSGCNVCTHPTCGQALLSTGIASCLQCEGG-----VLVLDLSSAPKWKICCNK 109
P R + GC+ CT GQ L+ I G ++V S P K+ CN+
Sbjct: 57 PRRHLSINGGCSNCT-SRGGQEYLNKFIRKLTDIHGNKYDYSMIVYKNSKTP-IKLKCNQ 114
Query: 110 CDIIIHVFP 118
CDII P
Sbjct: 115 CDIIFEQIP 123
>sp|Q29EQ3|RNO_DROPS PHD finger protein rhinoceros OS=Drosophila pseudoobscura
pseudoobscura GN=rno PE=3 SV=2
Length = 3313
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 21/97 (21%)
Query: 27 IDDFELLCWS-----------MGNKGKSYILCPYCY--NNPPYRDMKKGSGCNVCTHPTC 73
I++ E+ CW +G + ++C C ++ +M CN+C H C
Sbjct: 295 IEELEVRCWEQIQVILKQEEGLGIEFDENVICDVCRSPDSEEANEMVFCDNCNICVHQAC 354
Query: 74 -GQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNK 109
G + +G C C G+ P +C NK
Sbjct: 355 YGITAIPSGQWLCRTCSMGI-------TPDCVLCPNK 384
>sp|Q6PDK2|MLL2_MOUSE Histone-lysine N-methyltransferase MLL2 OS=Mus musculus GN=Mll2 PE=1
SV=2
Length = 5588
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 63 SGCNVCTHPTC-----GQALLSTG--IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIH 115
S C+ C HP C + +L G C+ CE V +S P + C+ CDI H
Sbjct: 1354 SQCSQCYHPYCVNSKITKVMLLKGWRCVECIVCE----VCGQASDPSRLLLCDDCDISYH 1409
Query: 116 VF 117
+
Sbjct: 1410 TY 1411
>sp|O14686|MLL2_HUMAN Histone-lysine N-methyltransferase MLL2 OS=Homo sapiens GN=MLL2 PE=1
SV=2
Length = 5537
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 63 SGCNVCTHPTC-----GQALLSTG--IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIH 115
S C+ C HP C + +L G C+ CE V +S P + C+ CDI H
Sbjct: 1398 SQCSQCYHPYCVNSKITKVMLLKGWRCVECIVCE----VCGQASDPSRLLLCDDCDISYH 1453
Query: 116 VF 117
+
Sbjct: 1454 TY 1455
>sp|E2JF22|PIEZ1_MOUSE Piezo-type mechanosensitive ion channel component 1 OS=Mus musculus
GN=Piezo1 PE=2 SV=1
Length = 2547
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 30 FELLCWSMGNKGKSYILCPYCYNNPPYRDM 59
F LC + G +++C YCY P +DM
Sbjct: 252 FNTLCVMVSCFGAGHLICLYCYQTPFIQDM 281
>sp|Q7YZH1|RNO_DROME PHD finger protein rhinoceros OS=Drosophila melanogaster GN=rno
PE=1 SV=1
Length = 3241
Score = 29.3 bits (64), Expect = 8.6, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 21/97 (21%)
Query: 27 IDDFELLCWS-----------MGNKGKSYILCPYCY--NNPPYRDMKKGSGCNVCTHPTC 73
I++ E+ CW +G + ++C C ++ +M CN+C H C
Sbjct: 284 IEELEVRCWEQIQVILKLEEGLGIEFDENVICDVCRSPDSEEANEMVFCDNCNICVHQAC 343
Query: 74 -GQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNK 109
G + +G C C G+ P +C NK
Sbjct: 344 YGITAIPSGQWLCRTCSMGI-------KPDCVLCPNK 373
>sp|Q99189|MTR10_YEAST mRNA transport regulator MTR10 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR10 PE=1 SV=1
Length = 972
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 75 QALLSTGIASCLQCEGGVLVL--DLSSAP--------KWKICCNKCDIIIHVFPDAQKVQ 124
Q L+TG S L C G ++V+ D S P WK ++C+ I F K+Q
Sbjct: 711 QGYLTTGFGSYLWCSGSLIVIFGDDESFPISPSLKDAVWKFALSQCETFILNFNKFDKLQ 770
Query: 125 V 125
+
Sbjct: 771 L 771
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,269,345
Number of Sequences: 539616
Number of extensions: 2241766
Number of successful extensions: 4153
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 4142
Number of HSP's gapped (non-prelim): 32
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)