Query psy8716
Match_columns 141
No_of_seqs 92 out of 94
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 17:26:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8716.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8716hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ayb_P DNA-directed RNA polyme 93.0 0.046 1.6E-06 34.5 1.9 15 21-35 22-36 (48)
2 1dl6_A Transcription factor II 87.2 0.45 1.5E-05 30.3 2.8 32 80-114 9-40 (58)
3 1pft_A TFIIB, PFTFIIBN; N-term 87.1 0.37 1.3E-05 29.3 2.3 30 82-114 5-34 (50)
4 3h0g_I DNA-directed RNA polyme 81.5 1.5 5.3E-05 31.0 3.8 35 82-117 4-39 (113)
5 3qt1_I DNA-directed RNA polyme 80.1 0.53 1.8E-05 34.8 1.0 40 77-117 19-59 (133)
6 2js4_A UPF0434 protein BB2007; 71.7 4.5 0.00015 26.7 3.7 41 79-123 5-45 (70)
7 3j20_Y 30S ribosomal protein S 70.1 5.8 0.0002 24.4 3.8 30 82-115 19-48 (50)
8 2hf1_A Tetraacyldisaccharide-1 69.5 4.4 0.00015 26.6 3.3 43 79-125 5-47 (68)
9 2l7x_A Envelope glycoprotein; 68.8 1.1 3.8E-05 30.4 0.2 20 41-60 27-46 (77)
10 2pk7_A Uncharacterized protein 67.8 3.6 0.00012 27.1 2.6 42 80-125 6-47 (69)
11 1twf_I B12.6, DNA-directed RNA 67.4 3.6 0.00012 29.4 2.7 36 81-117 3-39 (122)
12 2jny_A Uncharacterized BCR; st 66.3 5.9 0.0002 26.0 3.4 43 79-125 7-49 (67)
13 2jr6_A UPF0434 protein NMA0874 64.7 6.9 0.00024 25.6 3.5 42 80-125 6-47 (68)
14 2kpi_A Uncharacterized protein 61.5 9.4 0.00032 24.0 3.6 41 79-125 7-49 (56)
15 1vq8_Z 50S ribosomal protein L 59.8 9.5 0.00033 25.9 3.6 30 81-114 26-55 (83)
16 3u6p_A Formamidopyrimidine-DNA 58.7 6.3 0.00022 31.8 2.9 29 21-51 244-272 (273)
17 2k4x_A 30S ribosomal protein S 52.6 6 0.00021 24.8 1.5 28 83-114 19-46 (55)
18 2jne_A Hypothetical protein YF 50.9 35 0.0012 24.2 5.4 61 22-115 32-92 (101)
19 2k9h_A Glycoprotein; hantaviru 47.0 5.2 0.00018 25.8 0.5 9 46-54 30-38 (57)
20 2e6s_A E3 ubiquitin-protein li 46.1 43 0.0015 21.9 5.1 19 37-55 3-21 (77)
21 1k81_A EIF-2-beta, probable tr 43.4 25 0.00086 20.0 3.1 31 84-115 2-32 (36)
22 4bbr_M Transcription initiatio 39.0 27 0.00092 28.8 3.8 31 82-115 21-53 (345)
23 2gai_A DNA topoisomerase I; zi 38.9 6 0.0002 35.6 -0.2 49 82-139 572-624 (633)
24 1v5n_A PDI-like hypothetical p 38.7 18 0.00062 24.4 2.3 34 75-116 40-73 (89)
25 1gh9_A 8.3 kDa protein (gene M 38.1 46 0.0016 21.9 4.2 32 81-118 3-34 (71)
26 3o9x_A Uncharacterized HTH-typ 38.0 15 0.00053 25.1 1.9 42 83-139 3-48 (133)
27 1k3x_A Endonuclease VIII; hydr 35.5 31 0.001 27.4 3.5 29 21-51 233-261 (262)
28 2xzf_A Formamidopyrimidine-DNA 34.1 33 0.0011 27.3 3.5 29 21-51 241-269 (271)
29 1nui_A DNA primase/helicase; z 32.5 38 0.0013 26.0 3.5 33 81-117 13-46 (255)
30 1ee8_A MUTM (FPG) protein; bet 32.5 41 0.0014 26.8 3.8 33 21-55 234-266 (266)
31 4a2v_A RIG-I, retinoic acid in 32.4 38 0.0013 24.9 3.3 28 101-128 4-37 (131)
32 3h0g_L DNA-directed RNA polyme 32.0 12 0.00039 24.4 0.4 11 22-32 21-31 (63)
33 1k82_A Formamidopyrimidine-DNA 31.6 38 0.0013 26.9 3.5 29 21-51 239-267 (268)
34 3p8b_A DNA-directed RNA polyme 30.6 31 0.0011 23.5 2.4 31 97-139 16-47 (81)
35 3w0f_A Endonuclease 8-like 3; 30.5 28 0.00096 28.5 2.5 32 21-53 251-282 (287)
36 1ryq_A DNA-directed RNA polyme 30.3 35 0.0012 22.6 2.5 24 104-139 11-35 (69)
37 1wii_A Hypothetical UPF0222 pr 29.2 51 0.0018 22.4 3.3 34 18-51 19-54 (85)
38 1qyp_A RNA polymerase II; tran 27.8 53 0.0018 19.9 3.0 30 22-51 15-50 (57)
39 1lko_A Rubrerythrin all-iron(I 25.6 24 0.00082 26.6 1.2 19 15-33 144-166 (191)
40 2lcq_A Putative toxin VAPC6; P 22.9 33 0.0011 24.9 1.5 31 99-137 127-158 (165)
41 2k5r_A Uncharacterized protein 22.1 62 0.0021 22.5 2.7 45 80-125 6-74 (97)
42 2yuh_A Tubulin-specific chaper 22.0 53 0.0018 24.6 2.5 44 77-127 49-92 (179)
43 2jrp_A Putative cytoplasmic pr 21.4 54 0.0019 22.2 2.2 29 84-114 33-61 (81)
44 1aoc_A Coagulogen; coagulation 20.7 34 0.0011 25.9 1.1 13 49-61 74-86 (175)
45 3k1f_M Transcription initiatio 20.2 62 0.0021 25.4 2.6 29 83-114 22-52 (197)
No 1
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=93.00 E-value=0.046 Score=34.46 Aligned_cols=15 Identities=13% Similarity=0.642 Sum_probs=13.2
Q ss_pred CCCcCcCCCceEEEE
Q psy8716 21 QELKCPIDDFELLCW 35 (141)
Q Consensus 21 ~e~~CPLd~FeLl~~ 35 (141)
.+.+||+|||-++.=
T Consensus 22 P~IrCpyCGyrii~K 36 (48)
T 4ayb_P 22 PGVRCPYCGYKIIFM 36 (48)
T ss_dssp SSSCCTTTCCSCEEC
T ss_pred CCcccCccCcEEEEE
Confidence 789999999999864
No 2
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=87.18 E-value=0.45 Score=30.30 Aligned_cols=32 Identities=19% Similarity=0.541 Sum_probs=22.9
Q ss_pred ceeecCCCCCCceEEEecCCCCceEEEcCCCCeEE
Q psy8716 80 TGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIII 114 (141)
Q Consensus 80 ~~V~~C~~C~~G~LvLdp~s~pkw~l~Cn~C~~~v 114 (141)
+.+..||+|++..|+.|...+- +.|..|.++|
T Consensus 9 l~~~~Cp~C~~~~lv~D~~~ge---~vC~~CGlVl 40 (58)
T 1dl6_A 9 LPRVTCPNHPDAILVEDYRAGD---MICPECGLVV 40 (58)
T ss_dssp CSCCSBTTBSSSCCEECSSSCC---EECTTTCCEE
T ss_pred cccccCcCCCCCceeEeCCCCe---EEeCCCCCEE
Confidence 4455788887546888765443 8888888877
No 3
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=87.14 E-value=0.37 Score=29.26 Aligned_cols=30 Identities=33% Similarity=0.749 Sum_probs=23.2
Q ss_pred eecCCCCCCceEEEecCCCCceEEEcCCCCeEE
Q psy8716 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIII 114 (141)
Q Consensus 82 V~~C~~C~~G~LvLdp~s~pkw~l~Cn~C~~~v 114 (141)
+..||.|++..|+.|+..+ .|.|..|..++
T Consensus 5 ~~~CP~C~~~~l~~d~~~g---elvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERG---EIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTT---EEEESSSCCBC
T ss_pred cEeCcCCCCcceEEcCCCC---eEECcccCCcc
Confidence 4579999833899997543 49999998876
No 4
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=81.49 E-value=1.5 Score=31.03 Aligned_cols=35 Identities=17% Similarity=0.468 Sum_probs=26.3
Q ss_pred eecCCCCCCceEEEecCC-CCceEEEcCCCCeEEEcc
Q psy8716 82 IASCLQCEGGVLVLDLSS-APKWKICCNKCDIIIHVF 117 (141)
Q Consensus 82 V~~C~~C~~G~LvLdp~s-~pkw~l~Cn~C~~~v~l~ 117 (141)
..-||+|+ ++|.+.... ..+-++.|+.|+++..+-
T Consensus 4 m~FCp~Cg-n~L~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (113)
T 3h0g_I 4 FQYCIECN-NMLYPREDKVDRVLRLACRNCDYSEIAA 39 (113)
T ss_dssp CCCCSSSC-CCCEECCCTTTCCCCEECSSSCCEECCS
T ss_pred ceeCcCCC-CEeeEcccCCCCeeEEECCCCCCeEEcC
Confidence 34599999 888885432 467899999999987654
No 5
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=80.11 E-value=0.53 Score=34.78 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=28.3
Q ss_pred cccceeecCCCCCCceEEEecC-CCCceEEEcCCCCeEEEcc
Q psy8716 77 LLSTGIASCLQCEGGVLVLDLS-SAPKWKICCNKCDIIIHVF 117 (141)
Q Consensus 77 ~~~~~V~~C~~C~~G~LvLdp~-s~pkw~l~Cn~C~~~v~l~ 117 (141)
++..++--||+|+ ++|+.... ...+-++.|++|++...+.
T Consensus 19 ~~~~~~~FCPeCg-NmL~pked~~~~~l~~~CrtCgY~~~~~ 59 (133)
T 3qt1_I 19 SHMTTFRFCRDCN-NMLYPREDKENNRLLFECRTCSYVEEAG 59 (133)
T ss_dssp ---CCCCBCTTTC-CBCBCCBCTTTCCBCCBCSSSCCBCCCS
T ss_pred ccccCCeeCCCCC-CEeeECccCCCceeEEECCCCCCcEEcC
Confidence 4567788899999 88888542 2357889999999866543
No 6
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=71.72 E-value=4.5 Score=26.68 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=31.0
Q ss_pred cceeecCCCCCCceEEEecCCCCceEEEcCCCCeEEEccCCCeeE
Q psy8716 79 STGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKV 123 (141)
Q Consensus 79 ~~~V~~C~~C~~G~LvLdp~s~pkw~l~Cn~C~~~v~l~~~a~kv 123 (141)
-+.+-.||.|+ |-|.++.. +-.|.|..|...+-+-+++=..
T Consensus 5 LL~iL~CP~ck-~~L~~~~~---~~~LiC~~cg~~YPI~dGIPvm 45 (70)
T 2js4_A 5 LLDILVCPVCK-GRLEFQRA---QAELVCNADRLAFPVRDGVPIM 45 (70)
T ss_dssp CCCCCBCTTTC-CBEEEETT---TTEEEETTTTEEEEEETTEECC
T ss_pred HhhheECCCCC-CcCEEeCC---CCEEEcCCCCceecCCCCeeee
Confidence 35677899999 89999854 3469999999887777665433
No 7
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=70.12 E-value=5.8 Score=24.43 Aligned_cols=30 Identities=27% Similarity=0.531 Sum_probs=22.2
Q ss_pred eecCCCCCCceEEEecCCCCceEEEcCCCCeEEE
Q psy8716 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIH 115 (141)
Q Consensus 82 V~~C~~C~~G~LvLdp~s~pkw~l~Cn~C~~~v~ 115 (141)
.--||.|..|+++.+ . +=|+.|.+|.++.+
T Consensus 19 ~k~CP~CG~~~fm~~-~---~~R~~C~kCG~t~~ 48 (50)
T 3j20_Y 19 NKFCPRCGPGVFMAD-H---GDRWACGKCGYTEW 48 (50)
T ss_dssp SEECSSSCSSCEEEE-C---SSEEECSSSCCEEE
T ss_pred cccCCCCCCceEEec-C---CCeEECCCCCCEEE
Confidence 445899987877763 2 34889999998764
No 8
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=69.54 E-value=4.4 Score=26.58 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=32.8
Q ss_pred cceeecCCCCCCceEEEecCCCCceEEEcCCCCeEEEccCCCeeEec
Q psy8716 79 STGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQV 125 (141)
Q Consensus 79 ~~~V~~C~~C~~G~LvLdp~s~pkw~l~Cn~C~~~v~l~~~a~kv~v 125 (141)
-+.+-.||.|+ |-|.++.. +-.|.|..|...+-+-+++=..-+
T Consensus 5 LL~iL~CP~ck-~~L~~~~~---~~~LiC~~cg~~YPI~dGIPvmL~ 47 (68)
T 2hf1_A 5 FLEILVCPLCK-GPLVFDKS---KDELICKGDRLAFPIKDGIPMMLE 47 (68)
T ss_dssp CEEECBCTTTC-CBCEEETT---TTEEEETTTTEEEEEETTEECCCG
T ss_pred HhhheECCCCC-CcCeEeCC---CCEEEcCCCCcEecCCCCeeeeCh
Confidence 35678899999 88999853 456999999988888777644443
No 9
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=68.81 E-value=1.1 Score=30.45 Aligned_cols=20 Identities=30% Similarity=0.718 Sum_probs=16.4
Q ss_pred CeeeecCccCCCCCCcCCCC
Q psy8716 41 GKSYILCPYCYNNPPYRDMK 60 (141)
Q Consensus 41 gksy~lCP~CyN~PPf~~~~ 60 (141)
.=||.|||||-|--+-+|+.
T Consensus 27 nCs~NiCPYC~nRls~eGl~ 46 (77)
T 2l7x_A 27 NCSYNICPYCASRLTSDGLA 46 (77)
T ss_dssp HHTTTCCTTTCCCCCTTTHH
T ss_pred CCCcccChhhhccCCccchh
Confidence 34789999999999887753
No 10
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=67.76 E-value=3.6 Score=27.08 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=32.1
Q ss_pred ceeecCCCCCCceEEEecCCCCceEEEcCCCCeEEEccCCCeeEec
Q psy8716 80 TGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQV 125 (141)
Q Consensus 80 ~~V~~C~~C~~G~LvLdp~s~pkw~l~Cn~C~~~v~l~~~a~kv~v 125 (141)
+.+-.||.|+ |-|.++.. +-.|.|..|...+-+-+++-..-+
T Consensus 6 LeiL~CP~ck-~~L~~~~~---~~~LiC~~cg~~YPI~dGIPvmL~ 47 (69)
T 2pk7_A 6 LDILACPICK-GPLKLSAD---KTELISKGAGLAYPIRDGIPVMLE 47 (69)
T ss_dssp GGTCCCTTTC-CCCEECTT---SSEEEETTTTEEEEEETTEECCCG
T ss_pred HhheeCCCCC-CcCeEeCC---CCEEEcCCCCcEecCcCCeeeeCh
Confidence 5567899999 88999753 456999999988888777654443
No 11
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=67.44 E-value=3.6 Score=29.43 Aligned_cols=36 Identities=14% Similarity=0.325 Sum_probs=26.5
Q ss_pred eeecCCCCCCceEEEecC-CCCceEEEcCCCCeEEEcc
Q psy8716 81 GIASCLQCEGGVLVLDLS-SAPKWKICCNKCDIIIHVF 117 (141)
Q Consensus 81 ~V~~C~~C~~G~LvLdp~-s~pkw~l~Cn~C~~~v~l~ 117 (141)
++.-||+|+ .+|.+... ...+-++.|+.|++...+-
T Consensus 3 ~~~FCp~Cg-nlL~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 3 TFRFCRDCN-NMLYPREDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CCCBCSSSC-CBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred CCCcccccC-ccCcccccCcCCCCEEECCcCCCeeecC
Confidence 345699999 88888542 2456899999999876644
No 12
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=66.32 E-value=5.9 Score=25.96 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=32.4
Q ss_pred cceeecCCCCCCceEEEecCCCCceEEEcCCCCeEEEccCCCeeEec
Q psy8716 79 STGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQV 125 (141)
Q Consensus 79 ~~~V~~C~~C~~G~LvLdp~s~pkw~l~Cn~C~~~v~l~~~a~kv~v 125 (141)
-+.+-.||.|+ |-|.+|.. +-.|.|..|...+-+-+++=..-+
T Consensus 7 LLeiL~CP~ck-~~L~~~~~---~g~LvC~~c~~~YPI~dGIPvmL~ 49 (67)
T 2jny_A 7 LLEVLACPKDK-GPLRYLES---EQLLVNERLNLAYRIDDGIPVLLI 49 (67)
T ss_dssp GTCCCBCTTTC-CBCEEETT---TTEEEETTTTEEEEEETTEECCCS
T ss_pred HHHHhCCCCCC-CcCeEeCC---CCEEEcCCCCccccCCCCEeeeCh
Confidence 36678899999 89999853 346999999988877776544433
No 13
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=64.72 E-value=6.9 Score=25.63 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=32.0
Q ss_pred ceeecCCCCCCceEEEecCCCCceEEEcCCCCeEEEccCCCeeEec
Q psy8716 80 TGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQV 125 (141)
Q Consensus 80 ~~V~~C~~C~~G~LvLdp~s~pkw~l~Cn~C~~~v~l~~~a~kv~v 125 (141)
+.+-.||.|+ |-|.++.. +-.|.|..|...+-+-+++=..-+
T Consensus 6 L~iL~CP~ck-~~L~~~~~---~~~LiC~~cg~~YPI~dGIPvmL~ 47 (68)
T 2jr6_A 6 LDILVCPVTK-GRLEYHQD---KQELWSRQAKLAYPIKDGIPYMLE 47 (68)
T ss_dssp SCCCBCSSSC-CBCEEETT---TTEEEETTTTEEEEEETTEECCCT
T ss_pred hhheECCCCC-CcCeEeCC---CCEEEcCCCCcEecCCCCeeeeCh
Confidence 5677899999 88999853 356999999988887776644443
No 14
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=61.52 E-value=9.4 Score=23.96 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=31.5
Q ss_pred cceeecCCCCCCceEEEecCCCCceEEEcC--CCCeEEEccCCCeeEec
Q psy8716 79 STGIASCLQCEGGVLVLDLSSAPKWKICCN--KCDIIIHVFPDAQKVQV 125 (141)
Q Consensus 79 ~~~V~~C~~C~~G~LvLdp~s~pkw~l~Cn--~C~~~v~l~~~a~kv~v 125 (141)
-+.+-.||.|. |-|.++. -.|.|. .|...+-+-+++=..-+
T Consensus 7 lL~iL~CP~c~-~~L~~~~-----~~L~C~~~~c~~~YPI~dGIPvlL~ 49 (56)
T 2kpi_A 7 LLEILACPACH-APLEERD-----AELICTGQDCGLAYPVRDGIPVLLV 49 (56)
T ss_dssp CTTSCCCSSSC-SCEEEET-----TEEEECSSSCCCEEEEETTEECCCT
T ss_pred HHhheeCCCCC-CcceecC-----CEEEcCCcCCCcEEeeECCEeeeCH
Confidence 35677899999 8899975 468999 89988888777644433
No 15
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=59.80 E-value=9.5 Score=25.91 Aligned_cols=30 Identities=23% Similarity=0.474 Sum_probs=23.3
Q ss_pred eeecCCCCCCceEEEecCCCCceEEEcCCCCeEE
Q psy8716 81 GIASCLQCEGGVLVLDLSSAPKWKICCNKCDIII 114 (141)
Q Consensus 81 ~V~~C~~C~~G~LvLdp~s~pkw~l~Cn~C~~~v 114 (141)
.-..||.|+ +.++.++.. ..| .|..|...+
T Consensus 26 ~~y~Cp~CG-~~~v~r~at-GiW--~C~~Cg~~~ 55 (83)
T 1vq8_Z 26 EDHACPNCG-EDRVDRQGT-GIW--QCSYCDYKF 55 (83)
T ss_dssp SCEECSSSC-CEEEEEEET-TEE--EETTTCCEE
T ss_pred ccCcCCCCC-CcceeccCC-CeE--ECCCCCCEe
Confidence 345799998 889998764 455 799999876
No 16
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=58.74 E-value=6.3 Score=31.76 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=24.3
Q ss_pred CCCcCcCCCceEEEEEeCCCCeeeecCccCC
Q psy8716 21 QELKCPIDDFELLCWSMGNKGKSYILCPYCY 51 (141)
Q Consensus 21 ~e~~CPLd~FeLl~~s~g~~gksy~lCP~Cy 51 (141)
.+.-||-||=.+.....+ |++...||.|-
T Consensus 244 ~g~pC~~CG~~I~~~~~~--gR~t~~CP~CQ 272 (273)
T 3u6p_A 244 QGNPCKRCGTPIEKTVVA--GRGTHYCPRCQ 272 (273)
T ss_dssp TTSBCTTTCCBCEEEEET--TEEEEECTTTC
T ss_pred CcCCCCCCCCeEEEEEEC--CCCeEECCCCC
Confidence 456899999999888764 89999999994
No 17
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=52.55 E-value=6 Score=24.85 Aligned_cols=28 Identities=25% Similarity=0.570 Sum_probs=19.5
Q ss_pred ecCCCCCCceEEEecCCCCceEEEcCCCCeEE
Q psy8716 83 ASCLQCEGGVLVLDLSSAPKWKICCNKCDIII 114 (141)
Q Consensus 83 ~~C~~C~~G~LvLdp~s~pkw~l~Cn~C~~~v 114 (141)
--||.|+.|++ +... .-|+.|.+|.+..
T Consensus 19 ~fCPkCG~~~~-ma~~---~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 19 RFCPRCGPGVF-LAEH---ADRYSCGRCGYTE 46 (55)
T ss_dssp CCCTTTTTTCC-CEEC---SSEEECTTTCCCE
T ss_pred ccCcCCCCcee-Eecc---CCEEECCCCCCEE
Confidence 45889985553 3332 2399999999875
No 18
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=50.86 E-value=35 Score=24.20 Aligned_cols=61 Identities=26% Similarity=0.368 Sum_probs=38.8
Q ss_pred CCcCcCCCceEEEEEeCCCCeeeecCccCCCCCCcCCCCCCcccccccCCCCccccccceeecCCCCCCceEEEecCCCC
Q psy8716 22 ELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAP 101 (141)
Q Consensus 22 e~~CPLd~FeLl~~s~g~~gksy~lCP~CyN~PPf~~~~~~~~C~~C~hptC~~S~~~~~V~~C~~C~~G~LvLdp~s~p 101 (141)
+..||.|+=||. |. | + |..|..|-.+ -.-++.||+|.+..-+|..=++-
T Consensus 32 ~~~CP~Cq~eL~-~~-g--~--~~hC~~C~~~-------------------------f~~~a~CPdC~q~LevLkACGAv 80 (101)
T 2jne_A 32 ELHCPQCQHVLD-QD-N--G--HARCRSCGEF-------------------------IEMKALCPDCHQPLQVLKACGAV 80 (101)
T ss_dssp CCBCSSSCSBEE-EE-T--T--EEEETTTCCE-------------------------EEEEEECTTTCSBCEEEEETTEE
T ss_pred cccCccCCCcce-ec-C--C--EEECccccch-------------------------hhccccCcchhhHHHHHHHhcCc
Confidence 378999988866 53 1 2 3357777553 23466788888777788544433
Q ss_pred ceEEEcCCCCeEEE
Q psy8716 102 KWKICCNKCDIIIH 115 (141)
Q Consensus 102 kw~l~Cn~C~~~v~ 115 (141)
. ..||.|+=+|.
T Consensus 81 d--YFC~~chgLiS 92 (101)
T 2jne_A 81 D--YFCQHGHGLIS 92 (101)
T ss_dssp E--EEETTTTEEEC
T ss_pred c--hhhccCCceee
Confidence 3 45888886653
No 19
>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}
Probab=47.00 E-value=5.2 Score=25.79 Aligned_cols=9 Identities=44% Similarity=1.272 Sum_probs=7.7
Q ss_pred cCccCCCCC
Q psy8716 46 LCPYCYNNP 54 (141)
Q Consensus 46 lCP~CyN~P 54 (141)
-||||+|+-
T Consensus 30 qCPYC~~~~ 38 (57)
T 2k9h_A 30 QCPYCMTIT 38 (57)
T ss_dssp BCTTTCCBC
T ss_pred CCCcccCcC
Confidence 599999975
No 20
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.14 E-value=43 Score=21.93 Aligned_cols=19 Identities=26% Similarity=0.670 Sum_probs=15.2
Q ss_pred eCCCCeeeecCccCCCCCC
Q psy8716 37 MGNKGKSYILCPYCYNNPP 55 (141)
Q Consensus 37 ~g~~gksy~lCP~CyN~PP 55 (141)
+|.+.++.+.|..|-.++.
T Consensus 3 ~~~~~~~~~~c~~C~~~~~ 21 (77)
T 2e6s_A 3 SGSSGRNDTECDLCGGDPE 21 (77)
T ss_dssp CCCCCCCCCCCTTTCSCSS
T ss_pred ccccccCCccChhhcCCCC
Confidence 4666778999999998875
No 21
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=43.43 E-value=25 Score=20.05 Aligned_cols=31 Identities=16% Similarity=0.256 Sum_probs=21.3
Q ss_pred cCCCCCCceEEEecCCCCceEEEcCCCCeEEE
Q psy8716 84 SCLQCEGGVLVLDLSSAPKWKICCNKCDIIIH 115 (141)
Q Consensus 84 ~C~~C~~G~LvLdp~s~pkw~l~Cn~C~~~v~ 115 (141)
.|++|++..-.|.. ....|.|.|+.|...-.
T Consensus 2 lC~~C~~peT~l~~-~~~~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 2 ICRECGKPDTKIIK-EGRVHLLKCMACGAIRP 32 (36)
T ss_dssp CCSSSCSCEEEEEE-ETTEEEEEEETTTEEEE
T ss_pred CCcCCCCCCcEEEE-eCCcEEEEhhcCCCccc
Confidence 48899866444432 34779999999986543
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=39.02 E-value=27 Score=28.82 Aligned_cols=31 Identities=19% Similarity=0.658 Sum_probs=23.9
Q ss_pred eecCCCCCC--ceEEEecCCCCceEEEcCCCCeEEE
Q psy8716 82 IASCLQCEG--GVLVLDLSSAPKWKICCNKCDIIIH 115 (141)
Q Consensus 82 V~~C~~C~~--G~LvLdp~s~pkw~l~Cn~C~~~v~ 115 (141)
...||+|++ ..||.|..++ -+.|..|.++|.
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G---~~vC~~CGlVl~ 53 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEG---DVVCALCGLVLS 53 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGT---EEEETTTCBEEE
T ss_pred CCcCCCCCCCCCceeEECCCC---cEEeCCCCCCcc
Confidence 446999984 5799997543 689999999985
No 23
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=38.87 E-value=6 Score=35.60 Aligned_cols=49 Identities=12% Similarity=-0.151 Sum_probs=18.7
Q ss_pred eecCCCCCCceEEEecCCCCceEEEcCC---CCeEEEccCCCeeEecCCCCce-eeccceec
Q psy8716 82 IASCLQCEGGVLVLDLSSAPKWKICCNK---CDIIIHVFPDAQKVQVCTENNC-DCVQFTSN 139 (141)
Q Consensus 82 V~~C~~C~~G~LvLdp~s~pkw~l~Cn~---C~~~v~l~~~a~kv~v~~~~~C-~C~a~ll~ 139 (141)
.+.||.|+.|.|++-.+...+.+..|++ |.+.++..+ .+.. | + |+.|+.
T Consensus 572 ~G~CP~Cg~g~l~~r~~k~G~~f~gCs~yp~C~f~~~~~p-------~~~~-Cp~-~~~l~~ 624 (633)
T 2gai_A 572 YGFYLKCECGKTRSVKNDEIAVIDDGKIFLGRKDSESGSP-------DGRS-VEG-KGNLSE 624 (633)
T ss_dssp TEEEEECSSSCCEECCTTSBCEEETTEEEC--------------------------------
T ss_pred cccCcccCCCcceeecccCCCeEEeCCCCcCCCCeecCCc-------cCCc-CCC-CCeEEE
Confidence 3459999867777743333446889974 999987654 2454 8 8 776653
No 24
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=38.70 E-value=18 Score=24.37 Aligned_cols=34 Identities=26% Similarity=0.724 Sum_probs=22.9
Q ss_pred cccccceeecCCCCCCceEEEecCCCCceEEEcCCCCeEEEc
Q psy8716 75 QALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHV 116 (141)
Q Consensus 75 ~S~~~~~V~~C~~C~~G~LvLdp~s~pkw~l~Cn~C~~~v~l 116 (141)
+.|.......|-.|+. .+.+|+-.|..|++.+++
T Consensus 40 L~L~~~~~~~C~~C~~--------~~~~~~Y~C~~C~f~lH~ 73 (89)
T 1v5n_A 40 LELTRVQVYTCDKCEE--------EGTIWSYHCDECDFDLHA 73 (89)
T ss_dssp EEEECCSSCCCTTTSC--------CCCSCEEECTTTCCCCCH
T ss_pred cEEeeCCCeEeCCCCC--------cCCCcEEEcCCCCCeEcH
Confidence 3343333456777871 236899999999988764
No 25
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=38.12 E-value=46 Score=21.86 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=25.7
Q ss_pred eeecCCCCCCceEEEecCCCCceEEEcCCCCeEEEccC
Q psy8716 81 GIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFP 118 (141)
Q Consensus 81 ~V~~C~~C~~G~LvLdp~s~pkw~l~Cn~C~~~v~l~~ 118 (141)
.|..|| |. -.++.|. ++||+.. - |.-.+++-+
T Consensus 3 ~vv~C~-C~-~~~~~~~--~~kT~~C-~-CG~~~~~~k 34 (71)
T 1gh9_A 3 IIFRCD-CG-RALYSRE--GAKTRKC-V-CGRTVNVKD 34 (71)
T ss_dssp EEEEET-TS-CCEEEET--TCSEEEE-T-TTEEEECCS
T ss_pred EEEECC-CC-CEEEEcC--CCcEEEC-C-CCCeeeece
Confidence 367899 98 7788864 7999987 6 999998766
No 26
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=37.98 E-value=15 Score=25.14 Aligned_cols=42 Identities=21% Similarity=0.388 Sum_probs=24.8
Q ss_pred ecCCCCCCceEEEecCCCCceEEEcCCCCeEEEccCCCeeEec---CCCCce-eeccceec
Q psy8716 83 ASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQV---CTENNC-DCVQFTSN 139 (141)
Q Consensus 83 ~~C~~C~~G~LvLdp~s~pkw~l~Cn~C~~~v~l~~~a~kv~v---~~~~~C-~C~a~ll~ 139 (141)
..||.|+++.|+.+... +.+.+- .+.+.| .... | +||..+++
T Consensus 3 M~Cp~Cg~~~~~~~~~~------------~~~~~k--g~~~~v~~v~~~~-C~~CGE~~~d 48 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKD------------IPYTFR--GRKTVLKGIHGLY-CVHCEESIMN 48 (133)
T ss_dssp CBCTTTSSSBEEEEEEE------------EEEEET--TEEEEEEEEEEEE-ESSSSCEECC
T ss_pred cCCCcCCCCceeeceEE------------EEEEEC--CEEEEECCCceeE-CCCCCCEeec
Confidence 46999987778775322 233332 233333 3455 8 89887765
No 27
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=35.50 E-value=31 Score=27.40 Aligned_cols=29 Identities=14% Similarity=0.314 Sum_probs=24.5
Q ss_pred CCCcCcCCCceEEEEEeCCCCeeeecCccCC
Q psy8716 21 QELKCPIDDFELLCWSMGNKGKSYILCPYCY 51 (141)
Q Consensus 21 ~e~~CPLd~FeLl~~s~g~~gksy~lCP~Cy 51 (141)
.+.-||-||=.+.....+ |++...||.|-
T Consensus 233 ~g~pC~~CG~~I~~~~~~--gR~t~~CP~CQ 261 (262)
T 1k3x_A 233 DGEPCERCGSIIEKTTLS--SRPFYWCPGCQ 261 (262)
T ss_dssp TTSBCTTTCCBCEEEEET--TEEEEECTTTC
T ss_pred CcCCCCCCCCEeEEEEEC--CCCeEECCCCC
Confidence 446799999999888874 89999999994
No 28
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=34.07 E-value=33 Score=27.33 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=24.9
Q ss_pred CCCcCcCCCceEEEEEeCCCCeeeecCccCC
Q psy8716 21 QELKCPIDDFELLCWSMGNKGKSYILCPYCY 51 (141)
Q Consensus 21 ~e~~CPLd~FeLl~~s~g~~gksy~lCP~Cy 51 (141)
.+.-||-||=.+.....+ |++...||.|-
T Consensus 241 ~G~pC~~CG~~I~~~~~~--gR~t~~CP~CQ 269 (271)
T 2xzf_A 241 TGEKCSRCGAEIQKIKVA--GRGTHFCPVCQ 269 (271)
T ss_dssp TTSBCTTTCCBCEEEEET--TEEEEECTTTS
T ss_pred CCCCCCCCCCEeeEEEEC--CCceEECCCCC
Confidence 457799999999888874 89999999995
No 29
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=32.47 E-value=38 Score=25.99 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=22.4
Q ss_pred eeecCCCCCC-ceEEEecCCCCceEEEcCCCCeEEEcc
Q psy8716 81 GIASCLQCEG-GVLVLDLSSAPKWKICCNKCDIIIHVF 117 (141)
Q Consensus 81 ~V~~C~~C~~-G~LvLdp~s~pkw~l~Cn~C~~~v~l~ 117 (141)
.-.+||.|++ .-+.++.. +| ..|++|..-+.++
T Consensus 13 ~~~~CP~Cg~~d~~~~~~d---g~-~~C~~Cg~~~~~~ 46 (255)
T 1nui_A 13 YHIPCDNCGSSDGNSLFSD---GH-TFCYVCEKWTAGN 46 (255)
T ss_dssp EEECCSSSCCSSCEEEETT---SC-EEETTTCCEEC--
T ss_pred cCCcCCCCCCCCCceEeCC---CC-eecccCCCcCCCc
Confidence 3568999974 35777742 26 8999999876654
No 30
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=32.47 E-value=41 Score=26.82 Aligned_cols=33 Identities=24% Similarity=0.537 Sum_probs=27.4
Q ss_pred CCCcCcCCCceEEEEEeCCCCeeeecCccCCCCCC
Q psy8716 21 QELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPP 55 (141)
Q Consensus 21 ~e~~CPLd~FeLl~~s~g~~gksy~lCP~CyN~PP 55 (141)
.+.-||.||=.+..... .|++...||.|-.-.|
T Consensus 234 ~g~pC~~CG~~I~~~~~--~gR~t~~CP~CQ~~~~ 266 (266)
T 1ee8_A 234 EGLPCPACGRPVERRVV--AGRGTHFCPTCQGEGP 266 (266)
T ss_dssp TTSBCTTTCCBCEEEES--SSCEEEECTTTTTCCC
T ss_pred CCCCCCCCCCEeeEEEE--CCCceEECCCCCCCCC
Confidence 45779999999988876 4899999999987655
No 31
>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A
Probab=32.37 E-value=38 Score=24.85 Aligned_cols=28 Identities=14% Similarity=0.433 Sum_probs=21.3
Q ss_pred CceEEEcCCCCeEE------EccCCCeeEecCCC
Q psy8716 101 PKWKICCNKCDIII------HVFPDAQKVQVCTE 128 (141)
Q Consensus 101 pkw~l~Cn~C~~~v------~l~~~a~kv~v~~~ 128 (141)
..|+|.|.+|...+ +.-++.|-|-|+.+
T Consensus 4 ~~~kllCrkC~~~vC~g~DIr~ie~~HhVnv~p~ 37 (131)
T 4a2v_A 4 GQKNLLCGKCKAYACSTDDIRIIKDSHHIVLGEA 37 (131)
T ss_dssp -CCEEEETTTCCEEEEGGGEEEETTTEEEECSSG
T ss_pred cceEEEccCCCeeEEeccceEEeecceEEeeChh
Confidence 57999999999875 56677777777654
No 32
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=31.98 E-value=12 Score=24.44 Aligned_cols=11 Identities=9% Similarity=-0.143 Sum_probs=5.2
Q ss_pred CCcCcCCCceE
Q psy8716 22 ELKCPIDDFEL 32 (141)
Q Consensus 22 e~~CPLd~FeL 32 (141)
.++|.-||.|+
T Consensus 21 ~Y~C~~Cg~~~ 31 (63)
T 3h0g_L 21 IYLCADCGARN 31 (63)
T ss_dssp CCBCSSSCCBC
T ss_pred EEECCCCCCee
Confidence 34455554443
No 33
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=31.61 E-value=38 Score=26.95 Aligned_cols=29 Identities=10% Similarity=0.308 Sum_probs=24.6
Q ss_pred CCCcCcCCCceEEEEEeCCCCeeeecCccCC
Q psy8716 21 QELKCPIDDFELLCWSMGNKGKSYILCPYCY 51 (141)
Q Consensus 21 ~e~~CPLd~FeLl~~s~g~~gksy~lCP~Cy 51 (141)
.+.-||.||=.+.....+ |++...||.|-
T Consensus 239 ~g~pC~~CG~~I~~~~~~--gR~t~~CP~CQ 267 (268)
T 1k82_A 239 KGEPCRVCGTPIVATKHA--QRATFYCRQCQ 267 (268)
T ss_dssp TTSBCTTTCCBCEEEEET--TEEEEECTTTC
T ss_pred CCCCCCCCCCEeeEEEEC--CCceEECCCCC
Confidence 457799999999888864 89999999994
No 34
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=30.58 E-value=31 Score=23.53 Aligned_cols=31 Identities=16% Similarity=0.382 Sum_probs=17.8
Q ss_pred cCCCCceEEEcCCCCeEEEccCCCeeEecCCCCce-eeccceec
Q psy8716 97 LSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNC-DCVQFTSN 139 (141)
Q Consensus 97 p~s~pkw~l~Cn~C~~~v~l~~~a~kv~v~~~~~C-~C~a~ll~ 139 (141)
|.+...-..+|.+|.+++ +++. | .|++.-++
T Consensus 16 ~~~~~m~~rAC~~C~~v~-----------~~d~-CPnCgs~~~T 47 (81)
T 3p8b_A 16 PRGSHMSEKACRHCHYIT-----------SEDR-CPVCGSRDLS 47 (81)
T ss_dssp ------CCEEETTTCBEE-----------SSSS-CTTTCCCCEE
T ss_pred cCCcchhHHHHhhCCCcc-----------CCCC-CCCCCCCccC
Confidence 444444467899999885 2345 9 89876544
No 35
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=30.50 E-value=28 Score=28.54 Aligned_cols=32 Identities=16% Similarity=0.483 Sum_probs=26.8
Q ss_pred CCCcCcCCCceEEEEEeCCCCeeeecCccCCCC
Q psy8716 21 QELKCPIDDFELLCWSMGNKGKSYILCPYCYNN 53 (141)
Q Consensus 21 ~e~~CPLd~FeLl~~s~g~~gksy~lCP~CyN~ 53 (141)
++ .||.||=.+.....+..||+...||.|-.|
T Consensus 251 R~-pC~~CGt~I~~~~~g~~gRsTyfCp~~~~~ 282 (287)
T 3w0f_A 251 RP-NCDQCHSKITVCRFGENSRMTYFCPHCQKH 282 (287)
T ss_dssp CS-BCTTTCCBCEEECSSTTCCCEEECTTTSCC
T ss_pred CC-CCCCCCCEEEEEEecCCCCCEEECCCcccc
Confidence 44 899999888887776678999999999765
No 36
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=30.35 E-value=35 Score=22.58 Aligned_cols=24 Identities=21% Similarity=0.587 Sum_probs=16.3
Q ss_pred EEEcCCCCeEEEccCCCeeEecCCCCce-eeccceec
Q psy8716 104 KICCNKCDIIIHVFPDAQKVQVCTENNC-DCVQFTSN 139 (141)
Q Consensus 104 ~l~Cn~C~~~v~l~~~a~kv~v~~~~~C-~C~a~ll~ 139 (141)
..+|.+|.++| .++. | .|++..++
T Consensus 11 ~~AC~~C~~~~-----------~~~~-CPnC~s~~tS 35 (69)
T 1ryq_A 11 EKACRHCHYIT-----------SEDR-CPVCGSRDLS 35 (69)
T ss_dssp CEEETTTCBEE-----------SSSS-CTTTCCCCEE
T ss_pred hhhHHhCCccc-----------cCCc-CCCccCCccC
Confidence 36788888855 3555 8 88876543
No 37
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=29.19 E-value=51 Score=22.36 Aligned_cols=34 Identities=21% Similarity=0.492 Sum_probs=24.5
Q ss_pred CCCCCCcCcCCCce-EEEEEe-CCCCeeeecCccCC
Q psy8716 18 AMSQELKCPIDDFE-LLCWSM-GNKGKSYILCPYCY 51 (141)
Q Consensus 18 p~s~e~~CPLd~Fe-Ll~~s~-g~~gksy~lCP~Cy 51 (141)
+|.+...||+||-| .|.+.. ...++...-|--|-
T Consensus 19 ~L~t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg 54 (85)
T 1wii_A 19 TLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCL 54 (85)
T ss_dssp CCSSCCCCTTTCCSSCEEEEEETTTTEEEEEESSSC
T ss_pred CCCCeEcCCCCCCCCeEEEEEEccCCEEEEEcccCC
Confidence 56678899999999 666654 24577777777663
No 38
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=27.78 E-value=53 Score=19.88 Aligned_cols=30 Identities=17% Similarity=0.427 Sum_probs=20.4
Q ss_pred CCcCcCCCceEEEEEeC------CCCeeeecCccCC
Q psy8716 22 ELKCPIDDFELLCWSMG------NKGKSYILCPYCY 51 (141)
Q Consensus 22 e~~CPLd~FeLl~~s~g------~~gksy~lCP~Cy 51 (141)
..+||-||-+-+.|.+. ++.+.|-.|+.|-
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg 50 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCG 50 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCC
Confidence 46799999988877542 2445666777663
No 39
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=25.56 E-value=24 Score=26.64 Aligned_cols=19 Identities=11% Similarity=0.268 Sum_probs=12.7
Q ss_pred cCcCCC----CCCcCcCCCceEE
Q psy8716 15 TGKAMS----QELKCPIDDFELL 33 (141)
Q Consensus 15 sgkp~s----~e~~CPLd~FeLl 33 (141)
.|+.|. .-.+|+.|||-.-
T Consensus 144 ~~~~~~~~~~~~~~C~~CG~~~~ 166 (191)
T 1lko_A 144 EGRVFLREQATKWRCRNCGYVHE 166 (191)
T ss_dssp HTCSSEEEEEEEEEETTTCCEEE
T ss_pred cccccccCCCceEEECCCCCEee
Confidence 455554 2478999998743
No 40
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.90 E-value=33 Score=24.88 Aligned_cols=31 Identities=23% Similarity=0.504 Sum_probs=22.8
Q ss_pred CCCceEEEcCCCCeEEEccCCCeeEecCCCCce-eeccce
Q psy8716 99 SAPKWKICCNKCDIIIHVFPDAQKVQVCTENNC-DCVQFT 137 (141)
Q Consensus 99 s~pkw~l~Cn~C~~~v~l~~~a~kv~v~~~~~C-~C~a~l 137 (141)
....|..-|..|.-..... ..... | .||+.+
T Consensus 127 ~~~~~~y~C~~Cg~~~~~~-------~~~~~-Cp~CG~~~ 158 (165)
T 2lcq_A 127 KVIKWRYVCIGCGRKFSTL-------PPGGV-CPDCGSKV 158 (165)
T ss_dssp SCCCCCEEESSSCCEESSC-------CGGGB-CTTTCCBE
T ss_pred ccccEEEECCCCCCcccCC-------CCCCc-CCCCCCcc
Confidence 5568999999999877643 22245 9 999975
No 41
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=22.13 E-value=62 Score=22.53 Aligned_cols=45 Identities=7% Similarity=-0.083 Sum_probs=30.8
Q ss_pred ceeecCCCCCCceEEEecCC-----------------C-------CceEEEcCCCCeEEEccCCCeeEec
Q psy8716 80 TGIASCLQCEGGVLVLDLSS-----------------A-------PKWKICCNKCDIIIHVFPDAQKVQV 125 (141)
Q Consensus 80 ~~V~~C~~C~~G~LvLdp~s-----------------~-------pkw~l~Cn~C~~~v~l~~~a~kv~v 125 (141)
+.+-.||.|+ |-|.|+... . -+-.|.|..|...+-+-+++=.+-+
T Consensus 6 LdILaCP~cK-~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YPI~dGIPvmL~ 74 (97)
T 2k5r_A 6 LHLLCSPDTR-QPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIEDSIPVLLP 74 (97)
T ss_dssp CSSCCCCTTS-SCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEETTEEECCG
T ss_pred hhheECCCCC-CcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCccccCCCcccCh
Confidence 4567899999 777775321 0 1467999999988877776554444
No 42
>2yuh_A Tubulin-specific chaperone C; microtubule, beta-tubulin folding, beta-roll, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.96 E-value=53 Score=24.59 Aligned_cols=44 Identities=14% Similarity=0.336 Sum_probs=33.5
Q ss_pred cccceeecCCCCCCceEEEecCCCCceEEEcCCCCeEEEccCCCeeEecCC
Q psy8716 77 LLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCT 127 (141)
Q Consensus 77 ~~~~~V~~C~~C~~G~LvLdp~s~pkw~l~Cn~C~~~v~l~~~a~kv~v~~ 127 (141)
+.++.|..|..|. +++++..+.=+--.|.+|.+++. ++++++.+
T Consensus 49 ~~sl~i~~c~~c~---Iv~g~V~gsv~i~~C~~~~i~v~----c~Qlri~~ 92 (179)
T 2yuh_A 49 PNTLRLTKAHSCK---LLCGPVSTSVFLEDCSDCVLAVA----CQQLRIHS 92 (179)
T ss_dssp CSCEEEESCBSCE---EECCCCSSCEEEESCBSCEEECC----CSEEEEES
T ss_pred ccEEEEecCCCCE---EEECCcccEEEEEeCCceEEEEE----cCEEEEec
Confidence 4567777776665 77888888888889999988873 67788753
No 43
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.39 E-value=54 Score=22.20 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=15.6
Q ss_pred cCCCCCCceEEEecCCCCceEEEcCCCCeEE
Q psy8716 84 SCLQCEGGVLVLDLSSAPKWKICCNKCDIII 114 (141)
Q Consensus 84 ~C~~C~~G~LvLdp~s~pkw~l~Cn~C~~~v 114 (141)
-||+|++.+-+|-.=++- -..||.|+-+|
T Consensus 33 fCPeCgq~Le~lkACGA~--~yFC~~C~~Li 61 (81)
T 2jrp_A 33 LCPDCRQPLQVLKACGAV--DYFCQNGHGLI 61 (81)
T ss_dssp ECSSSCSCCCEEEETTEE--EECCTTTTCCC
T ss_pred cCcchhhHHHHHHhcCCc--CeeeccCCCEe
Confidence 577776555555221111 45677777554
No 44
>1aoc_A Coagulogen; coagulation factor, clottable protein, cystine knot superfamily; 2.00A {Tachypleus tridentatus} SCOP: g.17.1.5
Probab=20.70 E-value=34 Score=25.88 Aligned_cols=13 Identities=46% Similarity=1.117 Sum_probs=10.8
Q ss_pred cCCCCCCcCCCCC
Q psy8716 49 YCYNNPPYRDMKK 61 (141)
Q Consensus 49 ~CyN~PPf~~~~~ 61 (141)
.|||-|||-..+.
T Consensus 74 rcynf~pf~hf~s 86 (175)
T 1aoc_A 74 RCYNFPPFTHFKS 86 (175)
T ss_dssp SGGGSTTCCCCSS
T ss_pred ceecCCCcccccc
Confidence 6999999987663
No 45
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=20.16 E-value=62 Score=25.41 Aligned_cols=29 Identities=21% Similarity=0.670 Sum_probs=21.1
Q ss_pred ecCCCCCC--ceEEEecCCCCceEEEcCCCCeEE
Q psy8716 83 ASCLQCEG--GVLVLDLSSAPKWKICCNKCDIII 114 (141)
Q Consensus 83 ~~C~~C~~--G~LvLdp~s~pkw~l~Cn~C~~~v 114 (141)
..||+|++ ..||.|...+ -+.|..|-++|
T Consensus 22 ~~CPECGs~~t~IV~D~erG---E~VCsdCGLVL 52 (197)
T 3k1f_M 22 LTCPECKVYPPKIVERFSEG---DVVCALCGLVL 52 (197)
T ss_dssp CCCTTTCCSSCCEEEEGGGT---EEEETTTCBBC
T ss_pred eECcCCCCcCCeEEEeCCCC---EEEEcCCCCCc
Confidence 36888884 3688886553 57888888877
Done!