Your job contains 1 sequence.
>psy8716
MDQLFEVSFSPLAATGKAMSQELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMK
KGSGCNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDA
QKVQVCTENNCDCVQFTSNDK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8716
(141 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q5ZK71 - symbol:TOP3B "DNA topoisomerase" speci... 430 5.2e-46 2
UNIPROTKB|E1BQG8 - symbol:TOP3B "DNA topoisomerase" speci... 430 5.2e-46 2
MGI|MGI:1333803 - symbol:Top3b "topoisomerase (DNA) III b... 419 8.2e-45 2
RGD|1309468 - symbol:Top3b "topoisomerase (DNA) III beta"... 418 1.1e-44 2
UNIPROTKB|O95985 - symbol:TOP3B "DNA topoisomerase 3-beta... 417 1.4e-44 2
ZFIN|ZDB-GENE-070705-37 - symbol:top3b "topoisomerase (DN... 417 2.2e-44 2
UNIPROTKB|E2R770 - symbol:TOP3B "DNA topoisomerase" speci... 411 6.1e-44 2
UNIPROTKB|F1RL05 - symbol:TOP3B "DNA topoisomerase" speci... 410 7.7e-44 2
FB|FBgn0026015 - symbol:Top3beta "Topoisomerase 3beta" sp... 345 3.1e-36 2
WB|WBGene00012995 - symbol:Y48C3A.14 species:6239 "Caenor... 306 3.8e-26 1
UNIPROTKB|H0Y6W0 - symbol:TOP3B "DNA topoisomerase" speci... 210 4.5e-23 2
TAIR|locus:2045517 - symbol:AT2G32000 species:3702 "Arabi... 167 2.1e-16 2
>UNIPROTKB|Q5ZK71 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9031 "Gallus
gallus" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 eggNOG:COG0550 GeneTree:ENSGT00530000063430
KO:K03165 CTD:8940 HOGENOM:HOG000184378 HOVERGEN:HBG059857
OrthoDB:EOG4ZPDTK EMBL:AADN02034767 EMBL:AB215105 EMBL:AJ720213
IPI:IPI00570659 RefSeq:NP_001006181.1 UniGene:Gga.16362
STRING:Q5ZK71 Ensembl:ENSGALT00000002250 GeneID:416771
KEGG:gga:416771 NextBio:20820183 Uniprot:Q5ZK71
Length = 862
Score = 430 (156.4 bits), Expect = 5.2e-46, Sum P(2) = 5.2e-46
Identities = 70/112 (62%), Positives = 89/112 (79%)
Query: 21 QELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLST 80
+EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHPTC +L
Sbjct: 662 KELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPTCQHSLSML 721
Query: 81 GIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCD 132
GI C++CE GVLVLD +S PKWK+ CNKC++I+H F +A KV+V E C+
Sbjct: 722 GIGQCVECENGVLVLDSTSGPKWKMACNKCNVIVHFFENAHKVRVSPET-CE 772
Score = 87 (35.7 bits), Expect = 5.2e-46, Sum P(2) = 5.2e-46
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 1 MDQLFEVSFSPLAATGKAMSQELKC 25
MD+L EVSFSPLAATGK +S+ KC
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKC 627
>UNIPROTKB|E1BQG8 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9031 "Gallus
gallus" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0007059
GO:GO:0000793 GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
OMA:QMFLNIT EMBL:AADN02034767 IPI:IPI00820597
Ensembl:ENSGALT00000040019 ArrayExpress:E1BQG8 Uniprot:E1BQG8
Length = 863
Score = 430 (156.4 bits), Expect = 5.2e-46, Sum P(2) = 5.2e-46
Identities = 70/112 (62%), Positives = 89/112 (79%)
Query: 21 QELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLST 80
+EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHPTC +L
Sbjct: 663 KELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPTCQHSLSML 722
Query: 81 GIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCD 132
GI C++CE GVLVLD +S PKWK+ CNKC++I+H F +A KV+V E C+
Sbjct: 723 GIGQCVECENGVLVLDSTSGPKWKMACNKCNVIVHFFENAHKVRVSPET-CE 773
Score = 87 (35.7 bits), Expect = 5.2e-46, Sum P(2) = 5.2e-46
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 1 MDQLFEVSFSPLAATGKAMSQELKC 25
MD+L EVSFSPLAATGK +S+ KC
Sbjct: 604 MDELMEVSFSPLAATGKPLSRCGKC 628
>MGI|MGI:1333803 [details] [associations]
symbol:Top3b "topoisomerase (DNA) III beta" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IMP]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 UniProt:Q9Z321 Pfam:PF01751 MGI:MGI:1333803
InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0000793
GO:GO:0006265 PROSITE:PS50880 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
GeneTree:ENSGT00530000063430 KO:K03165 CTD:8940
HOGENOM:HOG000184378 HOVERGEN:HBG059857 OMA:GNKERDE
OrthoDB:EOG4ZPDTK EMBL:AB013603 EMBL:BC031723 IPI:IPI00131337
RefSeq:NP_035754.1 UniGene:Mm.326089 ProteinModelPortal:Q9Z321
SMR:Q9Z321 STRING:Q9Z321 PhosphoSite:Q9Z321 PaxDb:Q9Z321
PRIDE:Q9Z321 Ensembl:ENSMUST00000023465 Ensembl:ENSMUST00000119787
GeneID:21976 KEGG:mmu:21976 InParanoid:Q9Z321 ChiTaRS:TOP3B
NextBio:301682 Bgee:Q9Z321 CleanEx:MM_TOP3B Genevestigator:Q9Z321
GermOnline:ENSMUSG00000022779
Length = 862
Score = 419 (152.6 bits), Expect = 8.2e-45, Sum P(2) = 8.2e-45
Identities = 67/114 (58%), Positives = 88/114 (77%)
Query: 21 QELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLST 80
+EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHPTC +L
Sbjct: 662 KELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPTCQHSLSML 721
Query: 81 GIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTE--NNCD 132
GI C++CE GVLVLD +S PKWK+ CN C+++ H F +A +V+V + N C+
Sbjct: 722 GIGQCVECENGVLVLDPTSGPKWKVACNTCNVVAHCFENAHRVRVSADTCNTCE 775
Score = 87 (35.7 bits), Expect = 8.2e-45, Sum P(2) = 8.2e-45
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 1 MDQLFEVSFSPLAATGKAMSQELKC 25
MD+L EVSFSPLAATGK +S+ KC
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKC 627
>RGD|1309468 [details] [associations]
symbol:Top3b "topoisomerase (DNA) III beta" species:10116
"Rattus norvegicus" [GO:0000793 "condensed chromosome"
evidence=IEA;ISO] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0007059 "chromosome segregation" evidence=IEA;ISO]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 RGD:1309468
InterPro:IPR006171 GO:GO:0007059 GO:GO:0000793 EMBL:CH473999
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 GeneTree:ENSGT00530000063430 KO:K03165 CTD:8940
OrthoDB:EOG4ZPDTK OMA:QMFLNIT IPI:IPI00370440 RefSeq:NP_001099331.1
UniGene:Rn.23773 Ensembl:ENSRNOT00000002524 GeneID:287930
KEGG:rno:287930 NextBio:627240 Uniprot:D4A9Z2
Length = 862
Score = 418 (152.2 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 67/114 (58%), Positives = 87/114 (76%)
Query: 21 QELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLST 80
+EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHPTC +L
Sbjct: 662 KELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPTCQHSLSML 721
Query: 81 GIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTE--NNCD 132
GI C++CE GVLVLD +S PKWK+ CN C ++ H F +A +V+V + N C+
Sbjct: 722 GIGQCVECENGVLVLDPTSGPKWKVACNTCSVVAHCFDNAHRVRVSADTCNTCE 775
Score = 87 (35.7 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 1 MDQLFEVSFSPLAATGKAMSQELKC 25
MD+L EVSFSPLAATGK +S+ KC
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKC 627
>UNIPROTKB|O95985 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0003677 "DNA binding" evidence=TAS] [GO:0003916
"DNA topoisomerase activity" evidence=TAS] [GO:0005634 "nucleus"
evidence=TAS] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0007059
GO:GO:0000793 GO:GO:0006265 PROSITE:PS50880 SMART:SM00493
GO:GO:0003916 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
KO:K03165 EMBL:AF053082 EMBL:D87012 EMBL:AF017146 EMBL:AF125216
EMBL:CR456596 EMBL:BC002432 IPI:IPI00216815 IPI:IPI00216816
IPI:IPI00292671 RefSeq:NP_003926.1 UniGene:Hs.436401
ProteinModelPortal:O95985 SMR:O95985 IntAct:O95985
MINT:MINT-1458306 STRING:O95985 PhosphoSite:O95985 PaxDb:O95985
PRIDE:O95985 DNASU:8940 Ensembl:ENST00000357179
Ensembl:ENST00000398793 GeneID:8940 KEGG:hsa:8940 UCSC:uc002zvs.3
CTD:8940 GeneCards:GC22M022309 HGNC:HGNC:11993 HPA:CAB009198
MIM:603582 neXtProt:NX_O95985 PharmGKB:PA36674 HOGENOM:HOG000184378
HOVERGEN:HBG059857 InParanoid:O95985 OMA:GNKERDE OrthoDB:EOG4ZPDTK
PhylomeDB:O95985 ChEMBL:CHEMBL3127 GenomeRNAi:8940 NextBio:33622
ArrayExpress:O95985 Bgee:O95985 CleanEx:HS_TOP3B
Genevestigator:O95985 GermOnline:ENSG00000100038 Uniprot:O95985
Length = 862
Score = 417 (151.9 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 66/113 (58%), Positives = 87/113 (76%)
Query: 21 QELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLST 80
+EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG GCN CTHP+C +L
Sbjct: 662 KELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLSML 721
Query: 81 GIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
GI C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V + C
Sbjct: 722 GIGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAHRVRVSADTCSVC 774
Score = 87 (35.7 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 1 MDQLFEVSFSPLAATGKAMSQELKC 25
MD+L EVSFSPLAATGK +S+ KC
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKC 627
>ZFIN|ZDB-GENE-070705-37 [details] [associations]
symbol:top3b "topoisomerase (DNA) III beta"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
ZFIN:ZDB-GENE-070705-37 GO:GO:0005694 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 EMBL:BX005237 EMBL:CR933528
IPI:IPI01016652 ProteinModelPortal:F1QNX4
Ensembl:ENSDART00000030553 Bgee:F1QNX4 Uniprot:F1QNX4
Length = 862
Score = 417 (151.9 bits), Expect = 2.2e-44, Sum P(2) = 2.2e-44
Identities = 65/112 (58%), Positives = 91/112 (81%)
Query: 21 QELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLST 80
+ELKCP+D+FEL+ W+ G++GKSY +CPYC++NPP+RDMKKG GCN CTHP+C +L S
Sbjct: 663 KELKCPLDEFELVLWTSGSRGKSYPVCPYCFSNPPFRDMKKGMGCNECTHPSCQHSLNSL 722
Query: 81 GIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCD 132
GI C++CE GVLV D +S PKW++ CNKC++++H F A KVQV ++++CD
Sbjct: 723 GIGQCVECETGVLVFDPTSGPKWRMACNKCNVVVHFFEQAHKVQV-SQDSCD 773
Score = 85 (35.0 bits), Expect = 2.2e-44, Sum P(2) = 2.2e-44
Identities = 17/25 (68%), Positives = 21/25 (84%)
Query: 1 MDQLFEVSFSPLAATGKAMSQELKC 25
MD+L EVSFSP+AATGK +S+ KC
Sbjct: 604 MDELMEVSFSPIAATGKPLSRCGKC 628
>UNIPROTKB|E2R770 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9615 "Canis lupus
familiaris" [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0007059
GO:GO:0000793 GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
KO:K03165 CTD:8940 OMA:GNKERDE EMBL:AAEX03014902 RefSeq:XP_534771.2
Ensembl:ENSCAFT00000024557 GeneID:477576 KEGG:cfa:477576
Uniprot:E2R770
Length = 862
Score = 411 (149.7 bits), Expect = 6.1e-44, Sum P(2) = 6.1e-44
Identities = 66/113 (58%), Positives = 86/113 (76%)
Query: 21 QELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLST 80
+EL+CP+DDFEL+ WS G++GKSY LCPYC N+PP+RDMKKG GCN CTHPTC +L
Sbjct: 662 KELRCPLDDFELVLWSSGSRGKSYPLCPYCSNHPPFRDMKKGMGCNECTHPTCQHSLSML 721
Query: 81 GIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
GI C++CE GVLVLD +S PKWK+ CNKC+++ H F +A +V+V + C
Sbjct: 722 GIGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAYRVRVSADTCPTC 774
Score = 87 (35.7 bits), Expect = 6.1e-44, Sum P(2) = 6.1e-44
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 1 MDQLFEVSFSPLAATGKAMSQELKC 25
MD+L EVSFSPLAATGK +S+ KC
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKC 627
>UNIPROTKB|F1RL05 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9823 "Sus scrofa"
[GO:0007059 "chromosome segregation" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0007059 GO:GO:0000793 GO:GO:0006265
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 KO:K03165 CTD:8940 OMA:GNKERDE
EMBL:CU468588 RefSeq:XP_003359220.1 Ensembl:ENSSSCT00000011039
GeneID:100155140 KEGG:ssc:100155140 ArrayExpress:F1RL05
Uniprot:F1RL05
Length = 859
Score = 410 (149.4 bits), Expect = 7.7e-44, Sum P(2) = 7.7e-44
Identities = 64/113 (56%), Positives = 88/113 (77%)
Query: 21 QELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLST 80
+EL+CP+DDFEL+ WS G++GKSY LCPYC N+PP+RDMKKG+GCN CTHPTC +L
Sbjct: 662 KELRCPLDDFELVLWSSGSRGKSYPLCPYCSNHPPFRDMKKGTGCNECTHPTCQHSLNML 721
Query: 81 GIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCDC 133
GI C++CE GVLVLD +S PKW++ CN+C+++ H F +A +V+V ++ C
Sbjct: 722 GIGQCVECESGVLVLDPTSGPKWRVACNRCNVVAHCFENAHRVRVSSDTCSTC 774
Score = 87 (35.7 bits), Expect = 7.7e-44, Sum P(2) = 7.7e-44
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 1 MDQLFEVSFSPLAATGKAMSQELKC 25
MD+L EVSFSPLAATGK +S+ KC
Sbjct: 603 MDELMEVSFSPLAATGKPLSRCGKC 627
>FB|FBgn0026015 [details] [associations]
symbol:Top3beta "Topoisomerase 3beta" species:7227
"Drosophila melanogaster" [GO:0003917 "DNA topoisomerase type I
activity" evidence=ISS;NAS] [GO:0003916 "DNA topoisomerase
activity" evidence=IDA;NAS] [GO:0004520 "endodeoxyribonuclease
activity" evidence=IDA] [GO:0000737 "DNA catabolic process,
endonucleolytic" evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:AE014298 GO:GO:0004520
GO:GO:0000737 GO:GO:0006265 PROSITE:PS50880 SMART:SM00493
GO:GO:0003916 GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
GeneTree:ENSGT00530000063430 KO:K03165 Gene3D:1.10.290.10
EMBL:AF099909 EMBL:BT016116 RefSeq:NP_511059.2 UniGene:Dm.2946
ProteinModelPortal:O96651 DIP:DIP-22155N STRING:O96651 PaxDb:O96651
PRIDE:O96651 EnsemblMetazoa:FBtr0070930 GeneID:31565
KEGG:dme:Dmel_CG3458 CTD:31565 FlyBase:FBgn0026015
InParanoid:O96651 OMA:PPFVQGT OrthoDB:EOG4QRFJZ PhylomeDB:O96651
GenomeRNAi:31565 NextBio:774220 Bgee:O96651 GermOnline:CG3458
Uniprot:O96651
Length = 875
Score = 345 (126.5 bits), Expect = 3.1e-36, Sum P(2) = 3.1e-36
Identities = 60/114 (52%), Positives = 80/114 (70%)
Query: 21 QELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLST 80
+E KCP+DDF+LL +S G KG+SY CPYCYN+PP+ DM GCN CT+ C +L +
Sbjct: 656 REFKCPLDDFDLLAFSTGVKGRSYPFCPYCYNHPPFSDMPHLGGCNTCTNANCPHSLNTL 715
Query: 81 GIASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNC-DC 133
GI+SC++C GVLVLD + AP WK+ CN+CD+II+ F A K+ V E C +C
Sbjct: 716 GISSCVECPTGVLVLDCTLAPTWKLGCNRCDVIINCFKGATKITV-EEAKCQEC 768
Score = 82 (33.9 bits), Expect = 3.1e-36, Sum P(2) = 3.1e-36
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 1 MDQLFEVSFSPLAATGKAMSQELKC 25
MD LFEVSFSPLA +GKA S+ KC
Sbjct: 598 MDALFEVSFSPLAESGKAHSRCGKC 622
>WB|WBGene00012995 [details] [associations]
symbol:Y48C3A.14 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0032259
"methylation" evidence=IEA] [GO:0003916 "DNA topoisomerase
activity" evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005694 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 EMBL:AL117203 GeneID:174978
KEGG:cel:CELE_Y48C3A.14 CTD:174978 RefSeq:NP_001254381.1
ProteinModelPortal:H1UBJ9 SMR:H1UBJ9 EnsemblMetazoa:Y48C3A.14a
WormBase:Y48C3A.14a OMA:QMFLNIT Uniprot:H1UBJ9
Length = 869
Score = 306 (112.8 bits), Expect = 3.8e-26, P = 3.8e-26
Identities = 51/117 (43%), Positives = 80/117 (68%)
Query: 24 KCPIDDFELLCWS-MGNK-GKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLSTG 81
KCP+DDF+++ + G K +++ LCP+C+NNPP+ M +G+GC+ C HP+C ++ S G
Sbjct: 670 KCPLDDFDVILYQGPGGKLARTFTLCPFCFNNPPFEKMPQGAGCDTCVHPSCQYSISSNG 729
Query: 82 IASCLQCEGGVLVLDLSSAPKWKICCNKCDIIIHVFPDAQKVQVCTENNCD-C-VQF 136
+ CLQ GGV++LD S PKW++ CNKC ++ +F A KV+V + +C+ C QF
Sbjct: 730 VCGCLQDCGGVMLLDTQSHPKWRMTCNKCPSVVGLFEGAIKVKVDSTRSCEQCDAQF 786
>UNIPROTKB|H0Y6W0 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00437 GO:GO:0005694 GO:GO:0006265
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012
HGNC:HGNC:11993 ProteinModelPortal:H0Y6W0 Ensembl:ENST00000457270
Uniprot:H0Y6W0
Length = 525
Score = 210 (79.0 bits), Expect = 4.5e-23, Sum P(2) = 4.5e-23
Identities = 39/64 (60%), Positives = 49/64 (76%)
Query: 21 QELKCPIDDFELLCWSMGNKGKSYILCPYCYNNPPYRDMKKGSGCNVCTHPTCGQALLST 80
+EL+CP+DDFEL+ WS G++GKSY LCPYCYN+PP+RDMKKG C+H +LLST
Sbjct: 457 KELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGE----CSH-----SLLST 507
Query: 81 GIAS 84
G S
Sbjct: 508 GSCS 511
Score = 87 (35.7 bits), Expect = 4.5e-23, Sum P(2) = 4.5e-23
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 1 MDQLFEVSFSPLAATGKAMSQELKC 25
MD+L EVSFSPLAATGK +S+ KC
Sbjct: 398 MDELMEVSFSPLAATGKPLSRCGKC 422
>TAIR|locus:2045517 [details] [associations]
symbol:AT2G32000 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA;ISS] [GO:0005576
"extracellular region" evidence=ISM] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS] [GO:0006268 "DNA unwinding involved in
replication" evidence=ISS] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005694 EMBL:CP002685 GO:GO:0006265
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 KO:K03165
OMA:QMFLNIT IPI:IPI00534869 RefSeq:NP_180760.2 UniGene:At.38130
PRIDE:F4ISQ7 EnsemblPlants:AT2G32000.1 GeneID:817760
KEGG:ath:AT2G32000 Uniprot:F4ISQ7
Length = 865
Score = 167 (63.8 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 34/84 (40%), Positives = 49/84 (58%)
Query: 53 NPPYRDMKKGSG--CNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKC 110
N P + K G+G C++C HPTC ++ + G+ +C +CEG LVLD S PKWK+ CN C
Sbjct: 706 NAPAKT-KTGAGMPCSLCPHPTCQHSVRNQGVCACPECEG-TLVLDPVSFPKWKLNCNLC 763
Query: 111 DIIIHVFPDAQKVQVCTENNC-DC 133
I+ + P+ T N C +C
Sbjct: 764 SCIV-LLPEGAHRITTTSNRCPEC 786
Score = 145 (56.1 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 41/132 (31%), Positives = 63/132 (47%)
Query: 6 EVSFSPLAATGKAMSQELKCPIDDFELLCWSM-GNKGKSYILCPYCYNNPPYRDMKKGSG 64
EV + P T K + +EL CP+D+FEL+ +S+ G +GKS+ LCPYCYN+PP+ + G
Sbjct: 642 EVYYLPQKGTVK-LYKELTCPLDNFELVIYSVPGPEGKSFPLCPYCYNSPPFEGIDTLFG 700
Query: 65 CNVCTHPTCGQALLSTGIAS-CLQCEGGVLVLDLSSAPKWKIC-CNKCDIIIHVFPDAQK 122
+ + A TG C C S +C C +C+ + + P +
Sbjct: 701 ASKTPN---APAKTKTGAGMPCSLCPHPTCQ---HSVRNQGVCACPECEGTLVLDPVSFP 754
Query: 123 VQVCTENNCDCV 134
N C C+
Sbjct: 755 KWKLNCNLCSCI 766
Score = 74 (31.1 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 1 MDQLFEVSFSPLAATGKAMSQELKC 25
MD LFE FSPLA +G+A+S+ KC
Sbjct: 597 MDALFEAQFSPLADSGRALSKCGKC 621
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.137 0.465 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 141 141 0.00091 102 3 11 22 0.41 31
30 0.47 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 606 (64 KB)
Total size of DFA: 171 KB (2098 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.06u 0.12s 14.18t Elapsed: 00:00:03
Total cpu time: 14.06u 0.12s 14.18t Elapsed: 00:00:03
Start: Thu Aug 15 11:48:48 2013 End: Thu Aug 15 11:48:51 2013