RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8716
         (141 letters)



>gnl|CDD|215499 PLN02922, PLN02922, prenyltransferase.
          Length = 315

 Score = 26.6 bits (59), Expect = 5.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 45  ILCPYCYNNPPYRDMKKGSGCNVC 68
           ILC Y Y  PP+R   KG G  +C
Sbjct: 133 ILCGYVYQCPPFRLSYKGLGEPLC 156


>gnl|CDD|213947 TIGR04334, rSAM_Clo7bot, radical SAM/SPASM domain Clo7bot peptide
           maturase.  In multiple strains of Clostridium botulinum,
           this single radical SAM domain protein occurs next to a
           tandem array of seven homologous Cys-rich small peptides
           (see TIGR04333). Because this radical SAM enzyme
           contains the SPASM domain, associated with peptide
           modification, it is proposed to modify all seven C.
           botulinum targets, hence the name Clo7bot for this
           system. Suggested gene symbol is ctpM (Clostridial
           Tandem Peptide Maturase) [Protein fate, Protein
           modification and repair].
          Length = 440

 Score = 26.4 bits (58), Expect = 5.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)

Query: 47  CPYCYNNPPYRDMKK 61
           CPYCY NP    M K
Sbjct: 104 CPYCYENPKSGIMDK 118


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.137    0.465 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,591,270
Number of extensions: 527072
Number of successful extensions: 419
Number of sequences better than 10.0: 1
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 10
Length of query: 141
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 54
Effective length of database: 7,078,804
Effective search space: 382255416
Effective search space used: 382255416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.6 bits)