RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8716
         (141 letters)



>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta
           chain {Escherichia coli [TaxId: 562]}
          Length = 509

 Score = 24.7 bits (53), Expect = 5.1
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 64  GCNVCTHPTCGQALLSTGIASCLQCEGGVLVLDLSSAPKWKICCNKCDI-IIHVFPDAQK 122
            C  C +P C  A   +G A   + E G++++D      W++C   C    I+    + K
Sbjct: 183 LCEHCLNPAC-VATCPSG-AIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGK 240

Query: 123 VQVCT 127
            + C 
Sbjct: 241 SEKCI 245


>d1nxha_ a.200.1.1 (A:) Hypothetical protein MTH393 {Archaeon
          Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 124

 Score = 23.7 bits (51), Expect = 7.9
 Identities = 5/15 (33%), Positives = 12/15 (80%)

Query: 17 KAMSQELKCPIDDFE 31
          K +S+EL+  +++F+
Sbjct: 24 KPLSRELEIDVEEFQ 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.465 

Gapped
Lambda     K      H
   0.267   0.0564    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 558,371
Number of extensions: 26141
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 25
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.6 bits)