BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8717
(69 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O95985|TOP3B_HUMAN DNA topoisomerase 3-beta-1 OS=Homo sapiens GN=TOP3B PE=1 SV=1
Length = 862
Score = 95.1 bits (235), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/51 (74%), Positives = 46/51 (90%)
Query: 14 YQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN 64
+QGKYGDLD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L +N +
Sbjct: 200 FQGKYGDLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTD 250
>sp|Q9Z321|TOP3B_MOUSE DNA topoisomerase 3-beta-1 OS=Mus musculus GN=Top3b PE=2 SV=1
Length = 862
Score = 94.4 bits (233), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/53 (71%), Positives = 47/53 (88%)
Query: 14 YQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGE 66
+QGKYGDLD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L ++ + E
Sbjct: 200 FQGKYGDLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKE 252
>sp|O96651|TOP3B_DROME DNA topoisomerase 3-beta OS=Drosophila melanogaster GN=Top3beta
PE=2 SV=2
Length = 875
Score = 88.6 bits (218), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/46 (76%), Positives = 41/46 (89%)
Query: 14 YQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDL 59
+Q +YGDLD+SLISYGPCQTPTLGFCV+RHD I+TFKPE +W L L
Sbjct: 199 FQDRYGDLDSSLISYGPCQTPTLGFCVKRHDDIQTFKPESFWHLQL 244
>sp|P13099|TOP3_YEAST DNA topoisomerase 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=TOP3 PE=1 SV=1
Length = 656
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 22 DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL 61
D+ ++SYG CQ PTLGF V+R ++IR F PE +W + L +
Sbjct: 225 DSQVVSYGTCQFPTLGFVVDRFERIRNFVPEEFWYIQLVV 264
>sp|Q8T2T7|TOP3_DICDI DNA topoisomerase 3 OS=Dictyostelium discoideum GN=top3 PE=3 SV=1
Length = 828
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/35 (62%), Positives = 27/35 (77%)
Query: 25 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDL 59
+ISYGPCQ PTLGF VER+ +I FKPE +W L +
Sbjct: 232 IISYGPCQFPTLGFVVERYFRIVNFKPEDFWHLSV 266
>sp|O60126|TOP3_SCHPO DNA topoisomerase 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=top3 PE=1 SV=2
Length = 622
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 9 LKEADYQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLL 57
L+ Q + L +ISYGPCQ PTLGF V+R ++ F PE YW L
Sbjct: 190 LQTIQLQKSFDILQNKIISYGPCQFPTLGFVVDRWQRVEDFVPETYWHL 238
>sp|Q9NG98|TOP3A_DROME DNA topoisomerase 3-alpha OS=Drosophila melanogaster GN=Top3alpha
PE=2 SV=2
Length = 1250
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Query: 25 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLL-------DLTLNLN 64
LISYG CQ PTLGF ER+ +I F EP+W + DLT+ N
Sbjct: 230 LISYGSCQIPTLGFVAERYKEIEAFVSEPFWKIKVLHTIDDLTVEFN 276
>sp|Q9HM08|TOP1_THEAC DNA topoisomerase 1 OS=Thermoplasma acidophilum (strain ATCC 25905
/ DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=topA
PE=3 SV=1
Length = 770
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 19 GDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGEW 67
G L S +S G QTPTL V+R +I++F+PE YW + +T + +G++
Sbjct: 186 GRLGKSFLSAGRVQTPTLAIVVDREREIQSFRPERYWTISITFDKDGQF 234
>sp|Q9UYS8|TOP1_PYRAB DNA topoisomerase 1 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=topA PE=3 SV=1
Length = 685
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 25 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGE 66
++S G Q PTL F VER +I++F P+PYW++ L + NG+
Sbjct: 194 VLSTGRVQGPTLKFLVEREREIQSFVPKPYWVIKLVIEKNGQ 235
>sp|O58356|TOP1_PYRHO DNA topoisomerase 1 OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=topA PE=3
SV=1
Length = 686
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 25 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGE 66
++S G Q PTL F VER +I++F P PYW++ L NG+
Sbjct: 194 VLSTGRVQGPTLKFLVEREREIQSFVPRPYWVIKLIFEKNGQ 235
>sp|O61660|TOP3_CAEEL DNA topoisomerase 3 OS=Caenorhabditis elegans GN=top-3 PE=2 SV=1
Length = 759
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 23 ASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLL 57
+ +ISYG CQ PTLGF +R+ I F EP+W L
Sbjct: 208 SQVISYGSCQFPTLGFVTDRYKMIENFVSEPFWKL 242
>sp|O70157|TOP3A_MOUSE DNA topoisomerase 3-alpha OS=Mus musculus GN=Top3a PE=1 SV=1
Length = 1003
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 25/40 (62%)
Query: 21 LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLT 60
L LISYG CQ PTLGF VER I+ F PE + + +T
Sbjct: 234 LAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIKVT 273
>sp|O73954|TOP1_PYRFU DNA topoisomerase 1 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=topA PE=3 SV=2
Length = 1060
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 25 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGE 66
++S G Q PTL F V+R +I++F P+PYW++ L NG+
Sbjct: 194 VLSTGRVQGPTLKFLVDREREIQSFVPQPYWVIKLIFEKNGK 235
>sp|O27661|TOP1_METTH DNA topoisomerase 1 OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=topA PE=3 SV=1
Length = 718
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 26 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLL 57
+S G QTPTL VER +IR FKP PYW++
Sbjct: 201 LSAGRVQTPTLAILVEREKEIRDFKPVPYWII 232
>sp|Q13472|TOP3A_HUMAN DNA topoisomerase 3-alpha OS=Homo sapiens GN=TOP3A PE=1 SV=1
Length = 1001
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 25/40 (62%)
Query: 21 LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLT 60
L LISYG CQ PTLGF VER I+ F PE + + +T
Sbjct: 234 LAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVT 273
>sp|Q59046|TOP1_METJA DNA topoisomerase 1 OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=topA PE=3 SV=1
Length = 761
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 26 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLN 64
+S G Q P L F ER +I+ F P+PYW+++ L N
Sbjct: 195 MSVGRVQGPALAFLTERELEIKKFIPKPYWVIEALLKDN 233
>sp|Q8CRF7|TOP3_STAES DNA topoisomerase 3 OS=Staphylococcus epidermidis (strain ATCC
12228) GN=topB PE=3 SV=1
Length = 711
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 22 DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNG 65
DA L S G QTPT+ R D+I FKPE Y+ L++N++G
Sbjct: 182 DAQL-SLGRVQTPTIQIVKSRQDEINYFKPEKYY--TLSINVDG 222
>sp|Q5HLZ4|TOP3_STAEQ DNA topoisomerase 3 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=topB PE=3 SV=1
Length = 711
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 22 DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNG 65
DA L S G QTPT+ R D+I FKPE Y+ L++N++G
Sbjct: 182 DAQL-SLGRVQTPTIQIVKSRQDEINYFKPEKYY--TLSINVDG 222
>sp|O28469|TOP1_ARCFU DNA topoisomerase 1 OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=topA PE=3
SV=1
Length = 663
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 19 GDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYW 55
G + +S G QTPTL V+R +I+ FKPE Y+
Sbjct: 185 GRMGKDFLSVGRVQTPTLRLIVDRELEIQNFKPEKYY 221
>sp|Q2YXL8|TOP1_STAAB DNA topoisomerase 1 OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=topA PE=3 SV=2
Length = 689
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 26 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 58
+S G Q+ L ++R ++IR FKPE YW+++
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWIIE 194
>sp|P78032|TOP1_MYCPN DNA topoisomerase 1 OS=Mycoplasma pneumoniae (strain ATCC 29342 /
M129) GN=topA PE=3 SV=1
Length = 711
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 27 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGEWV 68
S G Q+ L F ER +IR+F P +W LD+ LN E V
Sbjct: 183 SAGRVQSVALRFLEEREQEIRSFVPRFWWTLDVLLNPKAEGV 224
>sp|Q65N90|TOP3_BACLD DNA topoisomerase 3 OS=Bacillus licheniformis (strain DSM 13 / ATCC
14580) GN=topB PE=3 SV=2
Length = 727
Score = 35.4 bits (80), Expect = 0.100, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 26 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLL 57
+S G QTPTL +R + I+ FKP PY+ L
Sbjct: 186 LSCGRVQTPTLAMIAKREEDIKNFKPVPYFGL 217
>sp|Q8NWZ9|TOP1_STAAW DNA topoisomerase 1 OS=Staphylococcus aureus (strain MW2) GN=topA
PE=3 SV=2
Length = 689
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 26 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 58
+S G Q+ L ++R ++IR FKPE YW ++
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWTIE 194
>sp|Q06AK7|TOP1_STAAU DNA topoisomerase 1 OS=Staphylococcus aureus GN=topA PE=3 SV=1
Length = 689
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 26 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 58
+S G Q+ L ++R ++IR FKPE YW ++
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWTIE 194
>sp|Q6G9W3|TOP1_STAAS DNA topoisomerase 1 OS=Staphylococcus aureus (strain MSSA476)
GN=topA PE=3 SV=1
Length = 689
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 26 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 58
+S G Q+ L ++R ++IR FKPE YW ++
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWTIE 194
>sp|Q6GHI5|TOP1_STAAR DNA topoisomerase 1 OS=Staphylococcus aureus (strain MRSA252)
GN=topA PE=3 SV=1
Length = 689
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 26 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 58
+S G Q+ L ++R ++IR FKPE YW ++
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWTIE 194
>sp|Q7A5Y5|TOP1_STAAN DNA topoisomerase 1 OS=Staphylococcus aureus (strain N315) GN=topA
PE=1 SV=1
Length = 689
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 26 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 58
+S G Q+ L ++R ++IR FKPE YW ++
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWTIE 194
>sp|Q99UM1|TOP1_STAAM DNA topoisomerase 1 OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=topA PE=3 SV=1
Length = 689
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 26 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 58
+S G Q+ L ++R ++IR FKPE YW ++
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWTIE 194
>sp|Q5HGI2|TOP1_STAAC DNA topoisomerase 1 OS=Staphylococcus aureus (strain COL) GN=topA
PE=3 SV=1
Length = 689
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 26 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 58
+S G Q+ L ++R ++IR FKPE YW ++
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWTIE 194
>sp|Q2FZ32|TOP1_STAA8 DNA topoisomerase 1 OS=Staphylococcus aureus (strain NCTC 8325)
GN=topA PE=3 SV=2
Length = 689
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 26 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 58
+S G Q+ L ++R ++IR FKPE YW ++
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWTIE 194
>sp|Q2FHI8|TOP1_STAA3 DNA topoisomerase 1 OS=Staphylococcus aureus (strain USA300)
GN=topA PE=3 SV=2
Length = 689
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 26 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 58
+S G Q+ L ++R ++IR FKPE YW ++
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWTIE 194
>sp|Q6GEH9|TOP3_STAAR DNA topoisomerase 3 OS=Staphylococcus aureus (strain MRSA252)
GN=topB PE=3 SV=1
Length = 711
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 22 DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL 61
DA L S G QTPT+ R +I FKP+ Y+ L LT+
Sbjct: 182 DAQL-SLGRVQTPTIQLVNTRQQEINQFKPQQYYTLSLTV 220
>sp|P0C2W6|TOP3_STAAB Putative DNA topoisomerase 3 OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=topB PE=5 SV=1
Length = 711
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 22 DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL 61
DA L S G QTPT+ R +I FKP+ Y+ L LT+
Sbjct: 182 DAQL-SLGRVQTPTIQLVNTRQQEINQFKPQQYYTLSLTV 220
>sp|Q5WAX6|TOP3_BACSK DNA topoisomerase 3 OS=Bacillus clausii (strain KSM-K16) GN=topB
PE=3 SV=1
Length = 729
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 26 ISYGPCQTPTLGFCVERHDKIRTFKPEPY 54
+S G QTPTL +R + IR F P+PY
Sbjct: 186 LSCGRVQTPTLAILADREEAIRKFVPKPY 214
>sp|Q9KA23|TOP1_BACHD DNA topoisomerase 1 OS=Bacillus halodurans (strain ATCC BAA-125 /
DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=topA PE=3
SV=1
Length = 690
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 26 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGE 66
+S G Q+ + ++R +I+ F+PE YW + T L+GE
Sbjct: 162 LSAGRVQSVAVKMIIDREKEIQAFEPEEYWSIQGTFALDGE 202
>sp|Q49X35|TOP1_STAS1 DNA topoisomerase 1 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=topA
PE=3 SV=1
Length = 688
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 26 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 58
+S G Q+ L ++R ++IR FKPE YW ++
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWKIE 194
>sp|Q8CSU3|TOP1_STAES DNA topoisomerase 1 OS=Staphylococcus epidermidis (strain ATCC
12228) GN=topA PE=3 SV=1
Length = 689
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 26 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 58
+S G Q+ L ++R ++IR FKPE YW ++
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWSIE 194
>sp|Q5HPU2|TOP1_STAEQ DNA topoisomerase 1 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=topA PE=3 SV=1
Length = 689
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 26 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 58
+S G Q+ L ++R ++IR FKPE YW ++
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWSIE 194
>sp|Q7A075|TOP3_STAAW DNA topoisomerase 3 OS=Staphylococcus aureus (strain MW2) GN=topB
PE=3 SV=1
Length = 711
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 22 DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL 61
DA L S G QTPT+ R +I FKP+ Y+ L LT+
Sbjct: 182 DAQL-SLGRVQTPTIQLVNTRQQEINQFKPQQYFTLSLTV 220
>sp|Q6G767|TOP3_STAAS DNA topoisomerase 3 OS=Staphylococcus aureus (strain MSSA476)
GN=topB PE=3 SV=1
Length = 711
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 22 DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL 61
DA L S G QTPT+ R +I FKP+ Y+ L LT+
Sbjct: 182 DAQL-SLGRVQTPTIQLVNTRQQEINQFKPQQYFTLSLTV 220
>sp|Q7A455|TOP3_STAAN DNA topoisomerase 3 OS=Staphylococcus aureus (strain N315) GN=topB
PE=3 SV=1
Length = 711
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 22 DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL 61
DA L S G QTPT+ R +I FKP+ Y+ L LT+
Sbjct: 182 DAQL-SLGRVQTPTIQLVNTRQQEINQFKPQQYFTLSLTV 220
>sp|Q99S17|TOP3_STAAM DNA topoisomerase 3 OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=topB PE=3 SV=1
Length = 711
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 22 DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL 61
DA L S G QTPT+ R +I FKP+ Y+ L LT+
Sbjct: 182 DAQL-SLGRVQTPTIQLVNTRQQEINQFKPQQYFTLSLTV 220
>sp|Q5HDV4|TOP3_STAAC DNA topoisomerase 3 OS=Staphylococcus aureus (strain COL) GN=topB
PE=3 SV=1
Length = 711
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 22 DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL 61
DA L S G QTPT+ R +I FKP+ Y+ L LT+
Sbjct: 182 DAQL-SLGRVQTPTIQLVNTRQQEINQFKPQQYFTLSLTV 220
>sp|Q2FW03|TOP3_STAA8 DNA topoisomerase 3 OS=Staphylococcus aureus (strain NCTC 8325)
GN=topB PE=3 SV=1
Length = 711
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 22 DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL 61
DA L S G QTPT+ R +I FKP+ Y+ L LT+
Sbjct: 182 DAQL-SLGRVQTPTIQLVNTRQQEINQFKPQQYFTLSLTV 220
>sp|Q2FEN5|TOP3_STAA3 DNA topoisomerase 3 OS=Staphylococcus aureus (strain USA300)
GN=topB PE=3 SV=1
Length = 711
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 22 DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL 61
DA L S G QTPT+ R +I FKP+ Y+ L LT+
Sbjct: 182 DAQL-SLGRVQTPTIQLVNTRQQEINQFKPQQYFTLSLTV 220
>sp|Q4L5V2|TOP1_STAHJ DNA topoisomerase 1 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=topA PE=3 SV=1
Length = 689
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 26 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 58
+S G Q+ L ++R ++IR FKPE YW ++
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWSIE 194
>sp|P34184|TOP1_BACPE DNA topoisomerase 1 OS=Bacillus pseudofirmus (strain OF4) GN=topA
PE=3 SV=3
Length = 707
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 24 SLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLN-----LNGEW 67
+ IS G QTP L V+R I F E +W + T N GEW
Sbjct: 196 TTISLGRVQTPLLAEIVKRERLIEQFTAENFWTVKATFNNQGNVYEGEW 244
>sp|Q9CP53|TOP3_PASMU DNA topoisomerase 3 OS=Pasteurella multocida (strain Pm70) GN=topB
PE=3 SV=1
Length = 650
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 10 KEADYQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYW 55
++A YQG ++S G QTP LG V R +I FKP+ ++
Sbjct: 185 RQAGYQG--------VLSVGRVQTPVLGLIVRRDLEIENFKPQDFF 222
>sp|Q9CN30|TOP1_PASMU DNA topoisomerase 1 OS=Pasteurella multocida (strain Pm70) GN=topA
PE=3 SV=1
Length = 868
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 26 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDL 59
+S G Q+ + VER +I+ F+PE YW +D+
Sbjct: 197 LSAGRVQSVAVKLVVEREREIKAFQPEEYWEIDV 230
>sp|P39814|TOP1_BACSU DNA topoisomerase 1 OS=Bacillus subtilis (strain 168) GN=topA PE=3
SV=1
Length = 691
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 26 ISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL 61
+S G Q+ L ++R +I FKPE YW +D T
Sbjct: 162 LSAGRVQSVALRLIIDREKEINDFKPEEYWTIDGTF 197
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.142 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,711,677
Number of Sequences: 539616
Number of extensions: 1007399
Number of successful extensions: 1743
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1678
Number of HSP's gapped (non-prelim): 67
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)