Query psy8717
Match_columns 69
No_of_seqs 111 out of 1111
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 17:27:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i7d_A DNA topoisomerase III; 99.9 2.2E-23 7.4E-28 161.6 7.9 61 1-61 167-228 (659)
2 1mw9_X DNA topoisomerase I; de 99.9 3.4E-23 1.2E-27 158.6 8.0 59 1-63 170-228 (592)
3 2gai_A DNA topoisomerase I; zi 99.9 6.2E-23 2.1E-27 158.3 6.5 57 1-61 142-198 (633)
4 4ddu_A Reverse gyrase; topoiso 99.7 3.2E-18 1.1E-22 137.5 5.8 53 1-58 727-779 (1104)
5 1gku_B Reverse gyrase, TOP-RG; 99.7 1.8E-17 6.3E-22 132.1 4.9 52 1-58 689-740 (1054)
6 1ztd_A Hypothetical protein PF 25.4 1.3E+02 0.0045 19.0 4.4 40 3-47 20-59 (133)
7 1p5d_X PMM, phosphomannomutase 19.5 84 0.0029 22.6 3.0 44 22-67 76-125 (463)
8 1jth_B Syntaxin 1A; coiled-coi 16.9 64 0.0022 17.8 1.5 14 35-48 1-14 (77)
9 1v9m_A V-type ATP synthase sub 16.5 80 0.0027 21.1 2.2 20 25-48 280-299 (323)
10 1n7s_B Syntaxin 1A; neuronal s 16.3 69 0.0023 17.3 1.5 14 35-48 3-16 (68)
No 1
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=99.89 E-value=2.2e-23 Score=161.64 Aligned_cols=61 Identities=23% Similarity=0.303 Sum_probs=55.5
Q ss_pred ChHHHHHHHHHHHHHhhhCCC-CCCceeccccchHHHHHHHHHHHHHHcCCCcceEEEEEEE
Q psy8717 1 MLDLLKLNLKEADYQGKYGDL-DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL 61 (69)
Q Consensus 1 ~lD~i~g~~~T~~~t~~~~~~-~~~~lS~GRVQtPtL~~vv~Re~~i~~F~~~~y~~i~~~~ 61 (69)
++||++|+|+||++|.++++. ..+.+|+||||||||+|||+||+||++|+|++||.|.+.+
T Consensus 167 ~~D~lvG~n~Sr~lt~~~r~~~~~~~lS~GRVQTPtL~lIv~Re~eI~~F~p~~yw~i~~~~ 228 (659)
T 1i7d_A 167 RADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHI 228 (659)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCSCCCCCTTHHHHHHHHHHHHHHHHTCCCCEEEEEEEEE
T ss_pred HHHHHHHHHhHHHHHHHHhhcCCCCceecCccccchHHHHHHHHHHHHhCCCcceEEEEEEE
Confidence 389999999999999976542 2368999999999999999999999999999999999998
No 2
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=99.88 E-value=3.4e-23 Score=158.64 Aligned_cols=59 Identities=24% Similarity=0.369 Sum_probs=55.4
Q ss_pred ChHHHHHHHHHHHHHhhhCCCCCCceeccccchHHHHHHHHHHHHHHcCCCcceEEEEEEEee
Q psy8717 1 MLDLLKLNLKEADYQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNL 63 (69)
Q Consensus 1 ~lD~i~g~~~T~~~t~~~~~~~~~~lS~GRVQtPtL~~vv~Re~~i~~F~~~~y~~i~~~~~~ 63 (69)
++||++|+|+||+++.+++. .+|+||||||||+|||+||+||++|+|++||.|.+.+..
T Consensus 170 ~~D~lvG~n~Sr~l~~~~~~----~lS~GRVQtptL~lIv~Re~eI~~F~p~~y~~i~~~~~~ 228 (592)
T 1mw9_X 170 FMDRVVGYMVSPLLWKKIAR----GLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTT 228 (592)
T ss_dssp HHHHHHHHHHHHHHHHHTCT----TCCCCTTHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC
T ss_pred HHHHHhhHhhhHHHHhhhcc----ccccCccchhHHHHHHHHHHHHHhCCCcceEEEEEEEec
Confidence 38999999999999999874 799999999999999999999999999999999998854
No 3
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=99.87 E-value=6.2e-23 Score=158.30 Aligned_cols=57 Identities=21% Similarity=0.308 Sum_probs=54.2
Q ss_pred ChHHHHHHHHHHHHHhhhCCCCCCceeccccchHHHHHHHHHHHHHHcCCCcceEEEEEEE
Q psy8717 1 MLDLLKLNLKEADYQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL 61 (69)
Q Consensus 1 ~lD~i~g~~~T~~~t~~~~~~~~~~lS~GRVQtPtL~~vv~Re~~i~~F~~~~y~~i~~~~ 61 (69)
++||++|+|+||+||.+++. .+|+||||||||+|||+||+||++|+|++||.|.+.+
T Consensus 142 ~~D~lvG~n~Sr~l~~~~~~----~lS~GRVQtptL~lIv~Re~eI~~F~p~~y~~i~~~~ 198 (633)
T 2gai_A 142 ILDRIVGYSLSPVLWRNFKS----NLSAGRVQSATLKLVCDREREILRFVPKKYHRITVNF 198 (633)
T ss_dssp HHHHHHHHHHHHHHHHHHSC----CCTTHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_pred HHHHHhhHHHCHHHHHhhhc----ccccCccchHHHHHHHHHHHHHHhCCCcceEEEEEEE
Confidence 48999999999999999974 7999999999999999999999999999999999877
No 4
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.72 E-value=3.2e-18 Score=137.50 Aligned_cols=53 Identities=28% Similarity=0.337 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHHHHhhhCCCCCCceeccccchHHHHHHHHHHHHHHcCCCcceEEEE
Q psy8717 1 MLDLLKLNLKEADYQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 58 (69)
Q Consensus 1 ~lD~i~g~~~T~~~t~~~~~~~~~~lS~GRVQtPtL~~vv~Re~~i~~F~~~~y~~i~ 58 (69)
++||++|+|+||++|.++++ +.+|+||||||||+|||+||+||+ +|++||.|.
T Consensus 727 ~~D~lvG~~~sr~l~~~~~~---~~lS~GRVQtptL~liv~Re~ei~--~~~~~~~i~ 779 (1104)
T 4ddu_A 727 VQDRWIGFELSGKLQKRFGR---SNLSAGRVQSTVLGWIVEREEEYK--KSEKDFTLL 779 (1104)
T ss_dssp HHHHHHHHHHHHHHHHHHSC---SCCCCCHHHHHHHHHHHHHHHTTT--TCCCCEEEE
T ss_pred HHHHHHHHHHhHHHHHhhCC---cccccCccccHHHHHHHHHHHHHh--ccCcEEEEE
Confidence 48999999999999999975 589999999999999999999999 678999983
No 5
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.68 E-value=1.8e-17 Score=132.13 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHHHHhhhCCCCCCceeccccchHHHHHHHHHHHHHHcCCCcceEEEE
Q psy8717 1 MLDLLKLNLKEADYQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 58 (69)
Q Consensus 1 ~lD~i~g~~~T~~~t~~~~~~~~~~lS~GRVQtPtL~~vv~Re~~i~~F~~~~y~~i~ 58 (69)
++||++|+|+||++|.++++ +.+|+||||||||+|||+||+|| +|++||.+.
T Consensus 689 ~~D~lvG~~~sr~l~~~~~~---~~lS~GRVQtptL~~iv~Re~ei---~~~~~~~~~ 740 (1054)
T 1gku_B 689 IEDRWIGFVLSQKLWERFNN---RNLSAGRAQTLVLGWIIDRFQES---RERRKIAIV 740 (1054)
T ss_dssp HHHHHHHHHHHHHHHHTTTC---SSCCCCTTHHHHHHHHHHHHTGG---GSEEEEEEE
T ss_pred HHHHHHHHHhCHHHHHhccC---ceeeeccccchHHHHHHHHHHhh---CCcCcEEEE
Confidence 38999999999999988754 58999999999999999999999 688999874
No 6
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=25.45 E-value=1.3e+02 Score=18.98 Aligned_cols=40 Identities=15% Similarity=0.031 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCceeccccchHHHHHHHHHHHHHH
Q psy8717 3 DLLKLNLKEADYQGKYGDLDASLISYGPCQTPTLGFCVERHDKIR 47 (69)
Q Consensus 3 D~i~g~~~T~~~t~~~~~~~~~~lS~GRVQtPtL~~vv~Re~~i~ 47 (69)
|-++-..+|.+++.-.| .-+.|||-...|++-.++-.-.+
T Consensus 20 DSLvNfl~SlALse~lG-----~Ptg~rVPnaSLaiale~agL~~ 59 (133)
T 1ztd_A 20 DSLINFLYSLALTEFLG-----KPTGDRVPNASLAIALELTGLSK 59 (133)
T ss_dssp HHHHHHHHHHHHHHHHT-----SCCCCCCCHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHhC-----CCCCCCCCChHHHHHHHHhhhhh
Confidence 66777888888888776 46789999999999888764433
No 7
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Probab=19.45 E-value=84 Score=22.62 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=32.0
Q ss_pred CCCceeccccchHHHHHHHHHHHHH------HcCCCcceEEEEEEEeeCCee
Q psy8717 22 DASLISYGPCQTPTLGFCVERHDKI------RTFKPEPYWLLDLTLNLNGEW 67 (69)
Q Consensus 22 ~~~~lS~GRVQtPtL~~vv~Re~~i------~~F~~~~y~~i~~~~~~~~~~ 67 (69)
+-.++-+|.+=||+|.+.+...... .+|-|..|--++..- +|..
T Consensus 76 G~~V~~~g~~pTP~l~~av~~~~~~~GImITASHNP~~~NGiK~~~--~G~~ 125 (463)
T 1p5d_X 76 GCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGSHNPPDYNGFKIVV--AGET 125 (463)
T ss_dssp TCEEEEEEECCHHHHHHHHHHSSCSEEEEECCTTSCTTEEEEEEEE--TTEE
T ss_pred CCEEEEeCCCChHHHHHHHHhcCCCeEEEEccCCCCcccceEEEEC--CCcc
Confidence 4457889999999999999765422 268888888777643 5544
No 8
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=16.88 E-value=64 Score=17.80 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHc
Q psy8717 35 TLGFCVERHDKIRT 48 (69)
Q Consensus 35 tL~~vv~Re~~i~~ 48 (69)
+|..|-+|+.+|++
T Consensus 1 ~l~~i~eR~~ei~~ 14 (77)
T 1jth_B 1 ALSEIETRHSEIIK 14 (77)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 47888899998875
No 9
>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M*
Probab=16.47 E-value=80 Score=21.09 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=16.3
Q ss_pred ceeccccchHHHHHHHHHHHHHHc
Q psy8717 25 LISYGPCQTPTLGFCVERHDKIRT 48 (69)
Q Consensus 25 ~lS~GRVQtPtL~~vv~Re~~i~~ 48 (69)
.+|+| |+++++..+|.||+|
T Consensus 280 ~f~~~----~~~ayl~~kE~Ei~n 299 (323)
T 1v9m_A 280 PLGVG----LVLAYVKEREWEAVR 299 (323)
T ss_dssp TTSHH----HHHHHHHHHHHHHHH
T ss_pred CCChH----HHHHHHHHHHHHHHH
Confidence 45554 789999999999987
No 10
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=16.31 E-value=69 Score=17.28 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHc
Q psy8717 35 TLGFCVERHDKIRT 48 (69)
Q Consensus 35 tL~~vv~Re~~i~~ 48 (69)
+|..|-+|+.+|++
T Consensus 3 ~l~~i~eR~~ei~~ 16 (68)
T 1n7s_B 3 ALSEIETRHSEIIK 16 (68)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57889999999875
Done!