AmiGO: BLAST Results


BLAST match view associations BLAST with TOP3B TOP3B TOP3B DNA topoisomerase 3-beta-1	protein from Homo sapiens	2.8e-18
BLAST match view associations BLAST with TOP3B TOP3B TOP3B DNA topoisomerase	protein from Sus scrofa	1.4e-17
BLAST match view associations BLAST with TOP3B TOP3B TOP3B DNA topoisomerase 3-beta-1	protein from Homo sapiens	1.4e-17
BLAST match view associations BLAST with Top3b Top3b Top3b topoisomerase (DNA) III beta	protein from Mus musculus	2.3e-17
BLAST match view associations BLAST with Top3b Top3b Top3b topoisomerase (DNA) III beta	gene from Rattus norvegicus	2.3e-17
BLAST match view associations BLAST with TOP3B TOP3B TOP3B DNA topoisomerase	protein from Gallus gallus	4.7e-17
BLAST match view associations BLAST with TOP3B TOP3B TOP3B DNA topoisomerase	protein from Canis lupus familiaris	4.7e-17
BLAST match view associations BLAST with top3b top3b top3b topoisomerase (DNA) III beta	gene_product from Danio rerio	3.4e-16
BLAST match view associations BLAST with Top3beta Top3beta Top3beta Topoisomerase 3beta	protein from Drosophila melanogaster	2.5e-15
BLAST match view associations BLAST with Y48C3A.14 Y48C3A.14 Y48C3A.14	gene from Caenorhabditis elegans	4.0e-15
BLAST match view associations BLAST with TOP3B TOP3B TOP3B DNA topoisomerase	protein from Homo sapiens	7.1e-14
BLAST match view associations BLAST with AT2G32000 AT2G32000 AT2G32000	protein from Arabidopsis thaliana	3.1e-12
BLAST match view associations BLAST with TOP3 TOP3 TOP3 DNA Topoisomerase III	gene from Saccharomyces cerevisiae	7.8e-07
BLAST match view associations BLAST with top3 top3 top3 DNA topoisomerase III	gene from Dictyostelium discoideum	1.4e-06
BLAST match view associations BLAST with orf19.5934 orf19.5934 orf19.5934	gene_product from Candida albicans	1.5e-06
BLAST match view associations BLAST with PF13_0251 PF13_0251 PF13_0251 DNA topoisomerase III, putative	gene from Plasmodium falciparum	2.3e-06
BLAST match view associations BLAST with PF13_0251 PF13_0251 PF13_0251 DNA topoisomerase III, putative	protein from Plasmodium falciparum 3D7	2.3e-06
BLAST match view associations BLAST with TOP3A TOP3A TOP3A AT5G63920	protein from Arabidopsis thaliana	8.7e-06
BLAST match view associations BLAST with top-3 top-3 top-3	gene from Caenorhabditis elegans	4.9e-05
BLAST match view associations BLAST with Top3alpha Top3alpha Top3alpha Topoisomerase 3alpha	protein from Drosophila melanogaster	5.4e-05
BLAST match view associations BLAST with BA_1905 BA_1905 BA_1905 DNA topoisomerase III	protein from Bacillus anthracis str. Ames	0.00016
BLAST match view associations BLAST with TOP3A TOP3A TOP3A DNA topoisomerase	protein from Gallus gallus	0.00019
BLAST match view associations BLAST with TOP3A TOP3A TOP3A DNA topoisomerase 3-alpha	protein from Homo sapiens	0.00026
BLAST match view associations BLAST with top3a top3a top3a topoisomerase (DNA) III alpha	gene_product from Danio rerio	0.00030
BLAST match view associations BLAST with Top3a Top3a Top3a topoisomerase (DNA) III alpha	gene from Rattus norvegicus	0.00046
BLAST match view associations BLAST with Top3a Top3a Top3a topoisomerase (DNA) III alpha	protein from Mus musculus	0.00049
BLAST match view associations BLAST with TOP3A TOP3A TOP3A DNA topoisomerase	protein from Homo sapiens	0.00055
BLAST match view associations BLAST with TOP3A TOP3A TOP3A DNA topoisomerase	protein from Canis lupus familiaris	0.00061
BLAST match view associations BLAST with TOP3A TOP3A TOP3A DNA topoisomerase 3-alpha	protein from Homo sapiens	0.00062
BLAST match view associations BLAST with TOP3A TOP3A TOP3A DNA topoisomerase	protein from Bos taurus	0.00062

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy8717
        (69 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|C9JEI7 - symbol:TOP3B "DNA topoisomerase 3-beta...   221  2.8e-18   1
UNIPROTKB|F1RL05 - symbol:TOP3B "DNA topoisomerase" speci...   226  1.4e-17   1
UNIPROTKB|O95985 - symbol:TOP3B "DNA topoisomerase 3-beta...   226  1.4e-17   1
MGI|MGI:1333803 - symbol:Top3b "topoisomerase (DNA) III b...   224  2.3e-17   1
RGD|1309468 - symbol:Top3b "topoisomerase (DNA) III beta"...   224  2.3e-17   1
UNIPROTKB|Q5ZK71 - symbol:TOP3B "DNA topoisomerase" speci...   221  4.7e-17   1
UNIPROTKB|E2R770 - symbol:TOP3B "DNA topoisomerase" speci...   221  4.7e-17   1
UNIPROTKB|E1BQG8 - symbol:TOP3B "DNA topoisomerase" speci...   221  4.7e-17   1
ZFIN|ZDB-GENE-070705-37 - symbol:top3b "topoisomerase (DN...   213  3.4e-16   1
FB|FBgn0026015 - symbol:Top3beta "Topoisomerase 3beta" sp...   205  2.5e-15   1
WB|WBGene00012995 - symbol:Y48C3A.14 species:6239 "Caenor...   203  4.0e-15   1
UNIPROTKB|H0Y6W0 - symbol:TOP3B "DNA topoisomerase" speci...   188  7.1e-14   1
TAIR|locus:2045517 - symbol:AT2G32000 species:3702 "Arabi...   176  3.1e-12   1
SGD|S000004224 - symbol:TOP3 "DNA Topoisomerase III" spec...   124  7.8e-07   1
POMBASE|SPBC16G5.12c - symbol:top3 "DNA topoisomerase III...   122  1.2e-06   1
DICTYBASE|DDB_G0275257 - symbol:top3 "DNA topoisomerase I...   123  1.4e-06   1
CGD|CAL0003329 - symbol:orf19.5934 species:5476 "Candida ...   121  1.5e-06   1
GENEDB_PFALCIPARUM|PF13_0251 - symbol:PF13_0251 "DNA topo...   120  2.3e-06   1
UNIPROTKB|Q8IDM7 - symbol:PF13_0251 "DNA topoisomerase II...   120  2.3e-06   1
ASPGD|ASPL0000072189 - symbol:AN4555 species:162425 "Emer...   118  3.2e-06   1
TAIR|locus:2160841 - symbol:TOP3A "topoisomerase 3alpha" ...   116  8.7e-06   1
WB|WBGene00006596 - symbol:top-3 species:6239 "Caenorhabd...   108  4.9e-05   1
FB|FBgn0040268 - symbol:Top3alpha "Topoisomerase 3alpha" ...   110  5.4e-05   1
TIGR_CMR|BA_1905 - symbol:BA_1905 "DNA topoisomerase III"...    95  0.00016   2
UNIPROTKB|H7BZN5 - symbol:TOP3A "DNA topoisomerase" speci...    99  0.00018   1
UNIPROTKB|F1P1F3 - symbol:TOP3A "DNA topoisomerase" speci...   104  0.00019   1
UNIPROTKB|K7EMT6 - symbol:TOP3A "DNA topoisomerase 3-alph...    90  0.00026   1
ZFIN|ZDB-GENE-071212-2 - symbol:top3a "topoisomerase (DNA...   102  0.00030   1
RGD|1309320 - symbol:Top3a "topoisomerase (DNA) III alpha...   100  0.00046   1
MGI|MGI:1197527 - symbol:Top3a "topoisomerase (DNA) III a...   100  0.00049   1
UNIPROTKB|B4DK80 - symbol:TOP3A "DNA topoisomerase" speci...    99  0.00055   1
UNIPROTKB|E2RIS5 - symbol:TOP3A "DNA topoisomerase" speci...    99  0.00061   1
UNIPROTKB|Q13472 - symbol:TOP3A "DNA topoisomerase 3-alph...    99  0.00062   1
UNIPROTKB|F1MGY1 - symbol:TOP3A "DNA topoisomerase" speci...    99  0.00062   1


>UNIPROTKB|C9JEI7 [details] [associations]
            symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
            "Homo sapiens" [GO:0003917 "DNA topoisomerase type I activity"
            evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
            [GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
            "chromosome segregation" evidence=IEA] InterPro:IPR000380
            InterPro:IPR003601 InterPro:IPR013497 InterPro:IPR013824
            Pfam:PF01131 SMART:SM00436 Pfam:PF01751 InterPro:IPR006171
            GO:GO:0007059 GO:GO:0000793 GO:GO:0006265 SMART:SM00493
            GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
            PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012 HGNC:HGNC:11993
            HOGENOM:HOG000184378 IPI:IPI01014062 ProteinModelPortal:C9JEI7
            STRING:C9JEI7 Ensembl:ENST00000424393 ArrayExpress:C9JEI7
            Bgee:C9JEI7 Uniprot:C9JEI7
        Length = 246

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 37/44 (84%), Positives = 43/44 (97%)

Query:    14 YQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLL 57
             +QGKYGDLD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L
Sbjct:   200 FQGKYGDLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVL 243


>UNIPROTKB|F1RL05 [details] [associations]
            symbol:TOP3B "DNA topoisomerase" species:9823 "Sus scrofa"
            [GO:0007059 "chromosome segregation" evidence=IEA] [GO:0000793
            "condensed chromosome" evidence=IEA] [GO:0003917 "DNA topoisomerase
            type I activity" evidence=IEA] [GO:0006265 "DNA topological change"
            evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
            InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
            InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
            PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
            InterPro:IPR006171 GO:GO:0007059 GO:GO:0000793 GO:GO:0006265
            SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
            InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
            GeneTree:ENSGT00530000063430 KO:K03165 CTD:8940 OMA:GNKERDE
            EMBL:CU468588 RefSeq:XP_003359220.1 Ensembl:ENSSSCT00000011039
            GeneID:100155140 KEGG:ssc:100155140 ArrayExpress:F1RL05
            Uniprot:F1RL05
        Length = 859

 Score = 226 (84.6 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 38/49 (77%), Positives = 45/49 (91%)

Query:    14 YQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLN 62
             +QGKYGDLD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L   +N
Sbjct:   200 FQGKYGDLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVN 248


>UNIPROTKB|O95985 [details] [associations]
            symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
            "Homo sapiens" [GO:0006265 "DNA topological change" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003917 "DNA
            topoisomerase type I activity" evidence=IEA] [GO:0000793 "condensed
            chromosome" evidence=IEA] [GO:0007059 "chromosome segregation"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=TAS] [GO:0003916
            "DNA topoisomerase activity" evidence=TAS] [GO:0005634 "nucleus"
            evidence=TAS] InterPro:IPR000380 InterPro:IPR003601
            InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
            InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
            PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
            InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0007059
            GO:GO:0000793 GO:GO:0006265 PROSITE:PS50880 SMART:SM00493
            GO:GO:0003916 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
            InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
            KO:K03165 EMBL:AF053082 EMBL:D87012 EMBL:AF017146 EMBL:AF125216
            EMBL:CR456596 EMBL:BC002432 IPI:IPI00216815 IPI:IPI00216816
            IPI:IPI00292671 RefSeq:NP_003926.1 UniGene:Hs.436401
            ProteinModelPortal:O95985 SMR:O95985 IntAct:O95985
            MINT:MINT-1458306 STRING:O95985 PhosphoSite:O95985 PaxDb:O95985
            PRIDE:O95985 DNASU:8940 Ensembl:ENST00000357179
            Ensembl:ENST00000398793 GeneID:8940 KEGG:hsa:8940 UCSC:uc002zvs.3
            CTD:8940 GeneCards:GC22M022309 HGNC:HGNC:11993 HPA:CAB009198
            MIM:603582 neXtProt:NX_O95985 PharmGKB:PA36674 HOGENOM:HOG000184378
            HOVERGEN:HBG059857 InParanoid:O95985 OMA:GNKERDE OrthoDB:EOG4ZPDTK
            PhylomeDB:O95985 ChEMBL:CHEMBL3127 GenomeRNAi:8940 NextBio:33622
            ArrayExpress:O95985 Bgee:O95985 CleanEx:HS_TOP3B
            Genevestigator:O95985 GermOnline:ENSG00000100038 Uniprot:O95985
        Length = 862

 Score = 226 (84.6 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 38/49 (77%), Positives = 45/49 (91%)

Query:    14 YQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLN 62
             +QGKYGDLD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L   +N
Sbjct:   200 FQGKYGDLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVN 248


>MGI|MGI:1333803 [details] [associations]
            symbol:Top3b "topoisomerase (DNA) III beta" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000793 "condensed chromosome" evidence=IDA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
            evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
            "chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
            evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IMP]
            [GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR000380
            InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
            InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
            Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
            SMART:SM00437 UniProt:Q9Z321 Pfam:PF01751 MGI:MGI:1333803
            InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0000793
            GO:GO:0006265 PROSITE:PS50880 SMART:SM00493 GO:GO:0003917
            Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
            PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
            GeneTree:ENSGT00530000063430 KO:K03165 CTD:8940
            HOGENOM:HOG000184378 HOVERGEN:HBG059857 OMA:GNKERDE
            OrthoDB:EOG4ZPDTK EMBL:AB013603 EMBL:BC031723 IPI:IPI00131337
            RefSeq:NP_035754.1 UniGene:Mm.326089 ProteinModelPortal:Q9Z321
            SMR:Q9Z321 STRING:Q9Z321 PhosphoSite:Q9Z321 PaxDb:Q9Z321
            PRIDE:Q9Z321 Ensembl:ENSMUST00000023465 Ensembl:ENSMUST00000119787
            GeneID:21976 KEGG:mmu:21976 InParanoid:Q9Z321 ChiTaRS:TOP3B
            NextBio:301682 Bgee:Q9Z321 CleanEx:MM_TOP3B Genevestigator:Q9Z321
            GermOnline:ENSMUSG00000022779
        Length = 862

 Score = 224 (83.9 bits), Expect = 2.3e-17, P = 2.3e-17
 Identities = 38/53 (71%), Positives = 47/53 (88%)

Query:    14 YQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGE 66
             +QGKYGDLD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L   ++ + E
Sbjct:   200 FQGKYGDLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKE 252


>RGD|1309468 [details] [associations]
            symbol:Top3b "topoisomerase (DNA) III beta" species:10116
            "Rattus norvegicus" [GO:0000793 "condensed chromosome"
            evidence=IEA;ISO] [GO:0003917 "DNA topoisomerase type I activity"
            evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
            [GO:0007059 "chromosome segregation" evidence=IEA;ISO]
            InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
            InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013825
            InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
            SMART:SM00436 SMART:SM00437 Pfam:PF01751 RGD:1309468
            InterPro:IPR006171 GO:GO:0007059 GO:GO:0000793 EMBL:CH473999
            GO:GO:0006265 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
            Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
            SUPFAM:SSF56712 GeneTree:ENSGT00530000063430 KO:K03165 CTD:8940
            OrthoDB:EOG4ZPDTK OMA:QMFLNIT IPI:IPI00370440 RefSeq:NP_001099331.1
            UniGene:Rn.23773 Ensembl:ENSRNOT00000002524 GeneID:287930
            KEGG:rno:287930 NextBio:627240 Uniprot:D4A9Z2
        Length = 862

 Score = 224 (83.9 bits), Expect = 2.3e-17, P = 2.3e-17
 Identities = 38/53 (71%), Positives = 47/53 (88%)

Query:    14 YQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGE 66
             +QGKYGDLD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L   ++ + E
Sbjct:   200 FQGKYGDLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKE 252


>UNIPROTKB|Q5ZK71 [details] [associations]
            symbol:TOP3B "DNA topoisomerase" species:9031 "Gallus
            gallus" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
            topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
            type I activity" evidence=IEA] InterPro:IPR000380
            InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
            InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
            Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
            SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
            GO:GO:0006265 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
            Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
            SUPFAM:SSF56712 eggNOG:COG0550 GeneTree:ENSGT00530000063430
            KO:K03165 CTD:8940 HOGENOM:HOG000184378 HOVERGEN:HBG059857
            OrthoDB:EOG4ZPDTK EMBL:AADN02034767 EMBL:AB215105 EMBL:AJ720213
            IPI:IPI00570659 RefSeq:NP_001006181.1 UniGene:Gga.16362
            STRING:Q5ZK71 Ensembl:ENSGALT00000002250 GeneID:416771
            KEGG:gga:416771 NextBio:20820183 Uniprot:Q5ZK71
        Length = 862

 Score = 221 (82.9 bits), Expect = 4.7e-17, P = 4.7e-17
 Identities = 37/49 (75%), Positives = 45/49 (91%)

Query:    14 YQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLN 62
             +QGKYG+LD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L   +N
Sbjct:   200 FQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVN 248


>UNIPROTKB|E2R770 [details] [associations]
            symbol:TOP3B "DNA topoisomerase" species:9615 "Canis lupus
            familiaris" [GO:0007059 "chromosome segregation" evidence=IEA]
            [GO:0000793 "condensed chromosome" evidence=IEA] [GO:0003917 "DNA
            topoisomerase type I activity" evidence=IEA] [GO:0006265 "DNA
            topological change" evidence=IEA] InterPro:IPR000380
            InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
            InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
            Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
            SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0007059
            GO:GO:0000793 GO:GO:0006265 SMART:SM00493 GO:GO:0003917
            Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
            PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
            KO:K03165 CTD:8940 OMA:GNKERDE EMBL:AAEX03014902 RefSeq:XP_534771.2
            Ensembl:ENSCAFT00000024557 GeneID:477576 KEGG:cfa:477576
            Uniprot:E2R770
        Length = 862

 Score = 221 (82.9 bits), Expect = 4.7e-17, P = 4.7e-17
 Identities = 37/49 (75%), Positives = 45/49 (91%)

Query:    14 YQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLN 62
             +QGKYG+LD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L   +N
Sbjct:   200 FQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVN 248


>UNIPROTKB|E1BQG8 [details] [associations]
            symbol:TOP3B "DNA topoisomerase" species:9031 "Gallus
            gallus" [GO:0006265 "DNA topological change" evidence=IEA]
            [GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
            "chromosome segregation" evidence=IEA] [GO:0003917 "DNA
            topoisomerase type I activity" evidence=IEA] InterPro:IPR000380
            InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
            InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
            Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
            SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0007059
            GO:GO:0000793 GO:GO:0006265 SMART:SM00493 GO:GO:0003917
            Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
            PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
            OMA:QMFLNIT EMBL:AADN02034767 IPI:IPI00820597
            Ensembl:ENSGALT00000040019 ArrayExpress:E1BQG8 Uniprot:E1BQG8
        Length = 863

 Score = 221 (82.9 bits), Expect = 4.7e-17, P = 4.7e-17
 Identities = 37/49 (75%), Positives = 45/49 (91%)

Query:    14 YQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLN 62
             +QGKYG+LD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L   +N
Sbjct:   200 FQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVN 248


>ZFIN|ZDB-GENE-070705-37 [details] [associations]
            symbol:top3b "topoisomerase (DNA) III beta"
            species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003916 "DNA topoisomerase activity" evidence=IEA] [GO:0005694
            "chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
            evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
            evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
            InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
            InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013825
            InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
            SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
            ZFIN:ZDB-GENE-070705-37 GO:GO:0005694 GO:GO:0006265 SMART:SM00493
            GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
            InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
            GeneTree:ENSGT00530000063430 EMBL:BX005237 EMBL:CR933528
            IPI:IPI01016652 ProteinModelPortal:F1QNX4
            Ensembl:ENSDART00000030553 Bgee:F1QNX4 Uniprot:F1QNX4
        Length = 862

 Score = 213 (80.0 bits), Expect = 3.4e-16, P = 3.4e-16
 Identities = 35/44 (79%), Positives = 43/44 (97%)

Query:    14 YQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLL 57
             +QGKYG+LD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW++
Sbjct:   200 FQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPEAYWVV 243


>FB|FBgn0026015 [details] [associations]
            symbol:Top3beta "Topoisomerase 3beta" species:7227
            "Drosophila melanogaster" [GO:0003917 "DNA topoisomerase type I
            activity" evidence=ISS;NAS] [GO:0003916 "DNA topoisomerase
            activity" evidence=IDA;NAS] [GO:0004520 "endodeoxyribonuclease
            activity" evidence=IDA] [GO:0000737 "DNA catabolic process,
            endonucleolytic" evidence=IDA] [GO:0006265 "DNA topological change"
            evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
            InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
            InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
            InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
            SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
            GO:GO:0005524 GO:GO:0005694 EMBL:AE014298 GO:GO:0004520
            GO:GO:0000737 GO:GO:0006265 PROSITE:PS50880 SMART:SM00493
            GO:GO:0003916 GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
            PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
            GeneTree:ENSGT00530000063430 KO:K03165 Gene3D:1.10.290.10
            EMBL:AF099909 EMBL:BT016116 RefSeq:NP_511059.2 UniGene:Dm.2946
            ProteinModelPortal:O96651 DIP:DIP-22155N STRING:O96651 PaxDb:O96651
            PRIDE:O96651 EnsemblMetazoa:FBtr0070930 GeneID:31565
            KEGG:dme:Dmel_CG3458 CTD:31565 FlyBase:FBgn0026015
            InParanoid:O96651 OMA:PPFVQGT OrthoDB:EOG4QRFJZ PhylomeDB:O96651
            GenomeRNAi:31565 NextBio:774220 Bgee:O96651 GermOnline:CG3458
            Uniprot:O96651
        Length = 875

 Score = 205 (77.2 bits), Expect = 2.5e-15, P = 2.5e-15
 Identities = 35/46 (76%), Positives = 41/46 (89%)

Query:    14 YQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDL 59
             +Q +YGDLD+SLISYGPCQTPTLGFCV+RHD I+TFKPE +W L L
Sbjct:   199 FQDRYGDLDSSLISYGPCQTPTLGFCVKRHDDIQTFKPESFWHLQL 244


>WB|WBGene00012995 [details] [associations]
            symbol:Y48C3A.14 species:6239 "Caenorhabditis elegans"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003917 "DNA
            topoisomerase type I activity" evidence=IEA] [GO:0005694
            "chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0032259
            "methylation" evidence=IEA] [GO:0003916 "DNA topoisomerase
            activity" evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
            InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
            InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
            PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
            InterPro:IPR006171 GO:GO:0005694 GO:GO:0006265 SMART:SM00493
            GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
            InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
            GeneTree:ENSGT00530000063430 EMBL:AL117203 GeneID:174978
            KEGG:cel:CELE_Y48C3A.14 CTD:174978 RefSeq:NP_001254381.1
            ProteinModelPortal:H1UBJ9 SMR:H1UBJ9 EnsemblMetazoa:Y48C3A.14a
            WormBase:Y48C3A.14a OMA:QMFLNIT Uniprot:H1UBJ9
        Length = 869

 Score = 203 (76.5 bits), Expect = 4.0e-15, P = 4.0e-15
 Identities = 34/44 (77%), Positives = 40/44 (90%)

Query:    14 YQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLL 57
             +QGKYGDLD+++ISYGPCQTPTLGFCV RHD+I  FKPE YW+L
Sbjct:   201 FQGKYGDLDSNVISYGPCQTPTLGFCVTRHDQIVQFKPEQYWVL 244


>UNIPROTKB|H0Y6W0 [details] [associations]
            symbol:TOP3B "DNA topoisomerase" species:9606 "Homo
            sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
            topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
            type I activity" evidence=IEA] InterPro:IPR000380
            InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
            InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
            PROSITE:PS00396 SMART:SM00437 GO:GO:0005694 GO:GO:0006265
            GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
            InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012
            HGNC:HGNC:11993 ProteinModelPortal:H0Y6W0 Ensembl:ENST00000457270
            Uniprot:H0Y6W0
        Length = 525

 Score = 188 (71.2 bits), Expect = 7.1e-14, P = 7.1e-14
 Identities = 32/42 (76%), Positives = 38/42 (90%)

Query:    21 LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLN 62
             LD+SLIS+GPCQTPTLGFCVERHDKI++FKPE YW+L   +N
Sbjct:     2 LDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVN 43


>TAIR|locus:2045517 [details] [associations]
            symbol:AT2G32000 species:3702 "Arabidopsis thaliana"
            [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003916 "DNA
            topoisomerase activity" evidence=IEA] [GO:0003917 "DNA
            topoisomerase type I activity" evidence=IEA;ISS] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0005694 "chromosome"
            evidence=IEA] [GO:0006265 "DNA topological change"
            evidence=IEA;ISS] [GO:0006268 "DNA unwinding involved in
            replication" evidence=ISS] [GO:0048573 "photoperiodism, flowering"
            evidence=RCA] InterPro:IPR000380 InterPro:IPR003601
            InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
            InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
            PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
            InterPro:IPR006171 GO:GO:0005694 EMBL:CP002685 GO:GO:0006265
            SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
            InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 KO:K03165
            OMA:QMFLNIT IPI:IPI00534869 RefSeq:NP_180760.2 UniGene:At.38130
            PRIDE:F4ISQ7 EnsemblPlants:AT2G32000.1 GeneID:817760
            KEGG:ath:AT2G32000 Uniprot:F4ISQ7
        Length = 865

 Score = 176 (67.0 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 30/44 (68%), Positives = 36/44 (81%)

Query:    14 YQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLL 57
             +QGKY +LD  +ISYGPCQTPTLGFCV+R+  I TFKPE +W L
Sbjct:   196 FQGKYQNLDCRVISYGPCQTPTLGFCVQRYMHINTFKPEKFWAL 239


>SGD|S000004224 [details] [associations]
            symbol:TOP3 "DNA Topoisomerase III" species:4932
            "Saccharomyces cerevisiae" [GO:0016853 "isomerase activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0031422
            "RecQ helicase-Topo III complex" evidence=IDA;IPI] [GO:0003916 "DNA
            topoisomerase activity" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0007131 "reciprocal meiotic
            recombination" evidence=IGI;IMP] [GO:0007004 "telomere maintenance
            via telomerase" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
            [GO:0003917 "DNA topoisomerase type I activity" evidence=IEA;IDA]
            [GO:0000018 "regulation of DNA recombination" evidence=IMP]
            [GO:0007064 "mitotic sister chromatid cohesion" evidence=IMP]
            [GO:0006265 "DNA topological change" evidence=IEA] [GO:0005694
            "chromosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
            InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
            InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
            SMART:SM00436 SMART:SM00437 SGD:S000004224 Pfam:PF01751
            InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 EMBL:BK006945
            EMBL:U19027 GO:GO:0007131 GO:GO:0007004 GO:GO:0007064 GO:GO:0000018
            GO:GO:0006265 PROSITE:PS50880 GO:GO:0031422 SMART:SM00493
            GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
            PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
            GeneTree:ENSGT00530000063430 KO:K03165 Gene3D:1.10.290.10
            HOGENOM:HOG000184377 OrthoDB:EOG4KWP2D EMBL:M24939 PIR:A33169
            RefSeq:NP_013335.1 ProteinModelPortal:P13099 DIP:DIP-2912N
            IntAct:P13099 MINT:MINT-442624 STRING:P13099 PaxDb:P13099
            PeptideAtlas:P13099 EnsemblFungi:YLR234W GeneID:850935
            KEGG:sce:YLR234W CYGD:YLR234w OMA:CCSEDAK NextBio:967378
            Genevestigator:P13099 GermOnline:YLR234W Uniprot:P13099
        Length = 656

 Score = 124 (48.7 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 20/40 (50%), Positives = 29/40 (72%)

Query:    22 DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTL 61
             D+ ++SYG CQ PTLGF V+R ++IR F PE +W + L +
Sbjct:   225 DSQVVSYGTCQFPTLGFVVDRFERIRNFVPEEFWYIQLVV 264


>POMBASE|SPBC16G5.12c [details] [associations]
            symbol:top3 "DNA topoisomerase III" species:4896
            "Schizosaccharomyces pombe" [GO:0000070 "mitotic sister chromatid
            segregation" evidence=IMP] [GO:0000280 "nuclear division"
            evidence=IMP] [GO:0000712 "resolution of meiotic recombination
            intermediates" evidence=TAS] [GO:0003917 "DNA topoisomerase type I
            activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006259
            "DNA metabolic process" evidence=IGI] [GO:0006261 "DNA-dependent
            DNA replication" evidence=IMP] [GO:0006265 "DNA topological change"
            evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IMP]
            [GO:0031297 "replication fork processing" evidence=NAS] [GO:0031422
            "RecQ helicase-Topo III complex" evidence=TAS] [GO:0043007
            "maintenance of rDNA" evidence=IMP] [GO:0045910 "negative
            regulation of DNA recombination" evidence=TAS] InterPro:IPR000380
            InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
            InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
            Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
            SMART:SM00437 PomBase:SPBC16G5.12c Pfam:PF01751 InterPro:IPR006171
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 EMBL:CU329671
            GenomeReviews:CU329671_GR GO:GO:0000070 GO:GO:0045910 GO:GO:0031297
            GO:GO:0000712 GO:GO:0007000 GO:GO:0043007 GO:GO:0006265
            PROSITE:PS50880 GO:GO:0031422 SMART:SM00493 GO:GO:0003917
            Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
            SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165 Gene3D:1.10.290.10
            HOGENOM:HOG000184377 OMA:IGLMDAN EMBL:AF126287 PIR:T39604
            RefSeq:NP_596761.1 ProteinModelPortal:O60126 STRING:O60126
            EnsemblFungi:SPBC16G5.12c.1 GeneID:2539881 KEGG:spo:SPBC16G5.12c
            OrthoDB:EOG4KWP2D NextBio:20801026 Uniprot:O60126
        Length = 622

 Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 23/49 (46%), Positives = 29/49 (59%)

Query:     9 LKEADYQGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLL 57
             L+    Q  +  L   +ISYGPCQ PTLGF V+R  ++  F PE YW L
Sbjct:   190 LQTIQLQKSFDILQNKIISYGPCQFPTLGFVVDRWQRVEDFVPETYWHL 238


>DICTYBASE|DDB_G0275257 [details] [associations]
            symbol:top3 "DNA topoisomerase III" species:44689
            "Dictyostelium discoideum" [GO:0006265 "DNA topological change"
            evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0003917
            "DNA topoisomerase type I activity" evidence=IEA] [GO:0003916 "DNA
            topoisomerase activity" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
            InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
            InterPro:IPR013826 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
            PROSITE:PS00396 SMART:SM00436 SMART:SM00437 dictyBase:DDB_G0275257
            Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
            GenomeReviews:CM000151_GR EMBL:AAFI02000013 GO:GO:0006265
            PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
            InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
            KO:K03165 Gene3D:1.10.290.10 RefSeq:XP_643754.2 HSSP:O29238
            ProteinModelPortal:Q8T2T7 STRING:Q8T2T7 EnsemblProtists:DDB0234226
            GeneID:8619798 KEGG:ddi:DDB_G0275257 OMA:IKRLWIN Uniprot:Q8T2T7
        Length = 828

 Score = 123 (48.4 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 22/35 (62%), Positives = 27/35 (77%)

Query:    25 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDL 59
             +ISYGPCQ PTLGF VER+ +I  FKPE +W L +
Sbjct:   232 IISYGPCQFPTLGFVVERYFRIVNFKPEDFWHLSV 266


>CGD|CAL0003329 [details] [associations]
            symbol:orf19.5934 species:5476 "Candida albicans" [GO:0005739
            "mitochondrion" evidence=IEA] [GO:0031422 "RecQ helicase-Topo III
            complex" evidence=IEA] [GO:0003917 "DNA topoisomerase type I
            activity" evidence=IEA] [GO:0043007 "maintenance of rDNA"
            evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
            [GO:0007131 "reciprocal meiotic recombination" evidence=IEA]
            [GO:0006261 "DNA-dependent DNA replication" evidence=IEA]
            [GO:0007004 "telomere maintenance via telomerase" evidence=IEA]
            [GO:0000018 "regulation of DNA recombination" evidence=IEA]
            [GO:0007064 "mitotic sister chromatid cohesion" evidence=IEA]
            InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
            InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
            Pfam:PF01131 PRINTS:PR00417 SMART:SM00436 SMART:SM00437
            CGD:CAL0003329 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
            EMBL:AACQ01000003 EMBL:AACQ01000004 GO:GO:0006265 SMART:SM00493
            GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
            PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165
            Gene3D:1.10.290.10 RefSeq:XP_722999.1 RefSeq:XP_723146.1
            STRING:Q5ANG9 GeneID:3635251 GeneID:3635329 KEGG:cal:CaO19.13355
            KEGG:cal:CaO19.5934 Uniprot:Q5ANG9
        Length = 629

 Score = 121 (47.7 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 18/35 (51%), Positives = 28/35 (80%)

Query:    25 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDL 59
             L SYG CQ PTLGF V+R+ ++++F PEP+W +++
Sbjct:   206 LASYGTCQFPTLGFVVDRYKRVKSFTPEPFWYIEI 240


>GENEDB_PFALCIPARUM|PF13_0251 [details] [associations]
            symbol:PF13_0251 "DNA topoisomerase III,
            putative" species:5833 "Plasmodium falciparum" [GO:0003918 "DNA
            topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
            InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
            InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
            Pfam:PF01131 PRINTS:PR00417 SMART:SM00436 SMART:SM00437
            Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694 EMBL:AL844509
            GO:GO:0006265 GO:GO:0003918 SMART:SM00493 GO:GO:0003917
            Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
            SUPFAM:SSF56712 KO:K03165 Gene3D:1.10.290.10 HOGENOM:HOG000184377
            OMA:IGLMDAN RefSeq:XP_001350185.1 ProteinModelPortal:Q8IDM7
            EnsemblProtists:PF13_0251:mRNA GeneID:814216 KEGG:pfa:PF13_0251
            EuPathDB:PlasmoDB:PF3D7_1347100 ProtClustDB:CLSZ2514997
            Uniprot:Q8IDM7
        Length = 710

 Score = 120 (47.3 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 22/48 (45%), Positives = 31/48 (64%)

Query:    22 DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGEWVS 69
             + S+ISYGPCQ PTLGF V R+  I+ FK E YW + +    N + ++
Sbjct:   203 ETSIISYGPCQFPTLGFVVNRYLDIKNFKNEYYWSIKMKYVYNNDEIN 250


>UNIPROTKB|Q8IDM7 [details] [associations]
            symbol:PF13_0251 "DNA topoisomerase III, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0003918 "DNA
            topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
            InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
            InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
            Pfam:PF01131 PRINTS:PR00417 SMART:SM00436 SMART:SM00437
            Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694 EMBL:AL844509
            GO:GO:0006265 GO:GO:0003918 SMART:SM00493 GO:GO:0003917
            Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
            SUPFAM:SSF56712 KO:K03165 Gene3D:1.10.290.10 HOGENOM:HOG000184377
            OMA:IGLMDAN RefSeq:XP_001350185.1 ProteinModelPortal:Q8IDM7
            EnsemblProtists:PF13_0251:mRNA GeneID:814216 KEGG:pfa:PF13_0251
            EuPathDB:PlasmoDB:PF3D7_1347100 ProtClustDB:CLSZ2514997
            Uniprot:Q8IDM7
        Length = 710

 Score = 120 (47.3 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 22/48 (45%), Positives = 31/48 (64%)

Query:    22 DASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGEWVS 69
             + S+ISYGPCQ PTLGF V R+  I+ FK E YW + +    N + ++
Sbjct:   203 ETSIISYGPCQFPTLGFVVNRYLDIKNFKNEYYWSIKMKYVYNNDEIN 250


>ASPGD|ASPL0000072189 [details] [associations]
            symbol:AN4555 species:162425 "Emericella nidulans"
            [GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
            [GO:0006268 "DNA unwinding involved in replication" evidence=IEA]
            [GO:0006265 "DNA topological change" evidence=IEA] [GO:0005694
            "chromosome" evidence=IEA] [GO:0000070 "mitotic sister chromatid
            segregation" evidence=IEA] [GO:0043007 "maintenance of rDNA"
            evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
            [GO:0006261 "DNA-dependent DNA replication" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR000380
            InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
            InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
            Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
            SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
            EMBL:BN001303 EMBL:AACD01000078 GO:GO:0006265 SMART:SM00493
            GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
            PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165
            Gene3D:1.10.290.10 HOGENOM:HOG000184377 OMA:IGLMDAN
            OrthoDB:EOG4KWP2D RefSeq:XP_662159.1 ProteinModelPortal:Q5B4H5
            STRING:Q5B4H5 EnsemblFungi:CADANIAT00005883 GeneID:2872352
            KEGG:ani:AN4555.2 Uniprot:Q5B4H5
        Length = 629

 Score = 118 (46.6 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query:    15 QGKYGDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGEWVS 69
             Q  +  L   +ISYG CQ PTLGF V+R+ +++ FKPE +W + +    +G  VS
Sbjct:   200 QNLHATLTQKVISYGSCQFPTLGFVVDRYLRVKRFKPETFWGIKVMHTRDGIKVS 254


>TAIR|locus:2160841 [details] [associations]
            symbol:TOP3A "topoisomerase 3alpha" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
            [GO:0003916 "DNA topoisomerase activity" evidence=IEA;ISS]
            [GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0005694 "chromosome"
            evidence=IEA] [GO:0006265 "DNA topological change"
            evidence=IEA;ISS] [GO:0006268 "DNA unwinding involved in
            replication" evidence=ISS] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0000712 "resolution of meiotic recombination
            intermediates" evidence=IMP] [GO:0006281 "DNA repair" evidence=IMP]
            [GO:0007059 "chromosome segregation" evidence=IMP] [GO:0007067
            "mitosis" evidence=IMP] [GO:0007126 "meiosis" evidence=IMP]
            [GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
            [GO:0006270 "DNA replication initiation" evidence=RCA] [GO:0006275
            "regulation of DNA replication" evidence=RCA] [GO:0006306 "DNA
            methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
            evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
            [GO:0048451 "petal formation" evidence=RCA] [GO:0048453 "sepal
            formation" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
            evidence=RCA] [GO:0051726 "regulation of cell cycle" evidence=RCA]
            InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
            InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
            InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013826
            InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
            PRINTS:PR00417 PROSITE:PS00396 PROSITE:PS50158 SMART:SM00343
            SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005694 GO:GO:0007067
            GO:GO:0008270 GO:GO:0006281 GO:GO:0000712 EMBL:AB019227
            GO:GO:0006265 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
            InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
            KO:K03165 Gene3D:1.10.290.10 HOGENOM:HOG000184377 OMA:KPRKCSL
            HSSP:P14294 EMBL:EU295446 IPI:IPI00517152 RefSeq:NP_201197.1
            UniGene:At.28974 ProteinModelPortal:Q9LVP1 SMR:Q9LVP1 PaxDb:Q9LVP1
            PRIDE:Q9LVP1 EnsemblPlants:AT5G63920.1 GeneID:836513
            KEGG:ath:AT5G63920 TAIR:At5g63920 InParanoid:Q9LVP1
            PhylomeDB:Q9LVP1 ProtClustDB:CLSN2686218 Genevestigator:Q9LVP1
            Uniprot:Q9LVP1
        Length = 926

 Score = 116 (45.9 bits), Expect = 8.7e-06, P = 8.7e-06
 Identities = 20/40 (50%), Positives = 30/40 (75%)

Query:    19 GDLDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLD 58
             G+  + +ISYGPCQ PTLGF VER+ +I+  +PE +W ++
Sbjct:   211 GEERSRVISYGPCQFPTLGFIVERYWEIQAHEPEEFWTIN 250


>WB|WBGene00006596 [details] [associations]
            symbol:top-3 species:6239 "Caenorhabditis elegans"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003917 "DNA
            topoisomerase type I activity" evidence=IEA] [GO:0005694
            "chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
            evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0007126 "meiosis" evidence=IMP] [GO:0007276 "gamete generation"
            evidence=IMP] InterPro:IPR000380 InterPro:IPR003601
            InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
            InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
            Pfam:PF01131 Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396
            SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
            GO:GO:0005524 GO:GO:0007126 GO:GO:0005694 GO:GO:0008270
            GO:GO:0007276 EMBL:AL132860 GO:GO:0006265 PROSITE:PS50880
            SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
            PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
            GeneTree:ENSGT00530000063430 KO:K03165 Gene3D:1.10.290.10
            HOGENOM:HOG000184377 EMBL:AF057032 PIR:T43031 RefSeq:NP_499558.1
            UniGene:Cel.19512 ProteinModelPortal:O61660 SMR:O61660
            STRING:O61660 PaxDb:O61660 EnsemblMetazoa:Y56A3A.27.1
            EnsemblMetazoa:Y56A3A.27.2 GeneID:176631 KEGG:cel:CELE_Y56A3A.27
            UCSC:Y56A3A.27.1 CTD:176631 WormBase:Y56A3A.27 InParanoid:O61660
            OMA:IGLMDAN NextBio:893376 Uniprot:O61660
        Length = 759

 Score = 108 (43.1 bits), Expect = 4.9e-05, P = 4.9e-05
 Identities = 24/55 (43%), Positives = 32/55 (58%)

Query:     4 LLKLNLKEADYQGKYGDLDAS-LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLL 57
             L  L+L+   ++   G  D S +ISYG CQ PTLGF  +R+  I  F  EP+W L
Sbjct:   189 LQTLHLRNR-FRDLLGQNDTSQVISYGSCQFPTLGFVTDRYKMIENFVSEPFWKL 242


>FB|FBgn0040268 [details] [associations]
            symbol:Top3alpha "Topoisomerase 3alpha" species:7227
            "Drosophila melanogaster" [GO:0003917 "DNA topoisomerase type I
            activity" evidence=ISS;NAS] [GO:0006265 "DNA topological change"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0005694 "chromosome" evidence=IEA] [GO:0003916 "DNA
            topoisomerase activity" evidence=IDA] [GO:0000724 "double-strand
            break repair via homologous recombination" evidence=IMP]
            [GO:0000002 "mitochondrial genome maintenance" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0042246 "tissue regeneration" evidence=IMP]
            [GO:0048589 "developmental growth" evidence=IMP] InterPro:IPR000380
            InterPro:IPR001878 InterPro:IPR003601 InterPro:IPR003602
            InterPro:IPR010666 InterPro:IPR013497 InterPro:IPR013498
            InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
            Pfam:PF01131 Pfam:PF01396 Pfam:PF06839 PRINTS:PR00417
            PROSITE:PS00396 SMART:SM00343 SMART:SM00436 SMART:SM00437
            Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005694 EMBL:AE014134 GO:GO:0008270
            GO:GO:0000002 GO:GO:0042246 GO:GO:0000724 GO:GO:0006265
            PROSITE:PS50880 SMART:SM00493 GO:GO:0003916 GO:GO:0003917
            Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
            SUPFAM:SSF56712 EMBL:AF255733 EMBL:BT015282 RefSeq:NP_523602.2
            UniGene:Dm.2659 ProteinModelPortal:Q9NG98 SMR:Q9NG98 STRING:Q9NG98
            PaxDb:Q9NG98 PRIDE:Q9NG98 EnsemblMetazoa:FBtr0081246 GeneID:35236
            KEGG:dme:Dmel_CG10123 CTD:35236 FlyBase:FBgn0040268 eggNOG:COG0550
            GeneTree:ENSGT00530000063430 InParanoid:Q9NG98 KO:K03165
            OMA:LVIHERN OrthoDB:EOG43TX9H PhylomeDB:Q9NG98 GenomeRNAi:35236
            NextBio:792526 Bgee:Q9NG98 GermOnline:CG10123 Gene3D:1.10.290.10
            Uniprot:Q9NG98
        Length = 1250

 Score = 110 (43.8 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 23/47 (48%), Positives = 28/47 (59%)

Query:    25 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLL-------DLTLNLN 64
             LISYG CQ PTLGF  ER+ +I  F  EP+W +       DLT+  N
Sbjct:   230 LISYGSCQIPTLGFVAERYKEIEAFVSEPFWKIKVLHTIDDLTVEFN 276


>TIGR_CMR|BA_1905 [details] [associations]
            symbol:BA_1905 "DNA topoisomerase III" species:198094
            "Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
            evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
            evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
            [GO:0006265 "DNA topological change" evidence=ISS]
            InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
            InterPro:IPR005738 InterPro:IPR013497 InterPro:IPR013824
            InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
            PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
            InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006265
            SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
            InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 HSSP:P14294
            HOGENOM:HOG000086847 KO:K03169 ProtClustDB:PRK07726
            TIGRFAMs:TIGR01056 RefSeq:NP_844316.1 RefSeq:YP_018548.1
            RefSeq:YP_028031.1 ProteinModelPortal:Q81RY0 DNASU:1086238
            EnsemblBacteria:EBBACT00000010748 EnsemblBacteria:EBBACT00000015345
            EnsemblBacteria:EBBACT00000022649 GeneID:1086238 GeneID:2818036
            GeneID:2849054 KEGG:ban:BA_1905 KEGG:bar:GBAA_1905 KEGG:bat:BAS1767
            OMA:GAYMTWA BioCyc:BANT260799:GJAJ-1836-MONOMER
            BioCyc:BANT261594:GJ7F-1910-MONOMER InterPro:IPR025589 Pfam:PF13342
            Uniprot:Q81RY0
        Length = 714

 Score = 95 (38.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query:    25 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGE 66
             + S G  QTPTL   V+R  +I  FK EP+W +  T N+ G+
Sbjct:   194 VFSAGRVQTPTLALIVKREKEIENFKSEPFWEVFATFNIEGK 235

 Score = 30 (15.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query:    10 KEADYQGKYGDLDAS 24
             K+A YQG    LD S
Sbjct:   141 KQAIYQGFKNLLDES 155


>UNIPROTKB|H7BZN5 [details] [associations]
            symbol:TOP3A "DNA topoisomerase" species:9606 "Homo
            sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
            topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
            type I activity" evidence=IEA] InterPro:IPR000380
            InterPro:IPR003601 InterPro:IPR013497 InterPro:IPR013824
            InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
            SMART:SM00436 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
            GO:GO:0006265 EMBL:AC127537 SMART:SM00493 GO:GO:0003917
            Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
            SUPFAM:SSF56712 HGNC:HGNC:11992 ProteinModelPortal:H7BZN5
            Ensembl:ENST00000412083 Uniprot:H7BZN5
        Length = 384

 Score = 99 (39.9 bits), Expect = 0.00018, P = 0.00018
 Identities = 21/40 (52%), Positives = 25/40 (62%)

Query:    21 LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLT 60
             L   LISYG CQ PTLGF VER   I+ F PE +  + +T
Sbjct:   209 LAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVT 248


>UNIPROTKB|F1P1F3 [details] [associations]
            symbol:TOP3A "DNA topoisomerase" species:9031 "Gallus
            gallus" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
            topological change" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
            evidence=IEA] [GO:0016605 "PML body" evidence=IEA]
            InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
            InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
            InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013826
            InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
            PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343 SMART:SM00436
            SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
            GO:GO:0016605 GO:GO:0008270 GO:GO:0006265 SMART:SM00493
            GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
            PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
            Gene3D:1.10.290.10 OMA:KPRKCSL EMBL:AADN02023704 IPI:IPI00571604
            Ensembl:ENSGALT00000008050 Uniprot:F1P1F3
        Length = 1020

 Score = 104 (41.7 bits), Expect = 0.00019, P = 0.00019
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query:    25 LISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLT 60
             LISYG CQ PTLGF VER   I+ F PE ++ + +T
Sbjct:   240 LISYGSCQFPTLGFVVERFKAIQAFVPEAFYKIKVT 275


>UNIPROTKB|K7EMT6 [details] [associations]
            symbol:TOP3A "DNA topoisomerase 3-alpha" species:9606 "Homo
            sapiens" [GO:0003917 "DNA topoisomerase type I activity"
            evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006265
            "DNA topological change" evidence=IEA] InterPro:IPR000380
            InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013825
            Pfam:PF01131 EMBL:AC127537 Gene3D:1.10.460.10 Gene3D:2.70.20.10
            InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
            HGNC:HGNC:11992 Ensembl:ENST00000581536 Uniprot:K7EMT6
        Length = 163

 Score = 90 (36.7 bits), Expect = 0.00026, P = 0.00026
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query:    27 SYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLT 60
             SYG CQ PTLGF VER   I+ F PE +  + +T
Sbjct:     2 SYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVT 35


>ZFIN|ZDB-GENE-071212-2 [details] [associations]
            symbol:top3a "topoisomerase (DNA) III alpha"
            species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003916 "DNA topoisomerase activity" evidence=IEA] [GO:0003917
            "DNA topoisomerase type I activity" evidence=IEA] [GO:0005694
            "chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016853 "isomerase
            activity" evidence=IEA] InterPro:IPR000380 InterPro:IPR001878
            InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR010666
            InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
            InterPro:IPR013826 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
            Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343
            SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
            ZFIN:ZDB-GENE-071212-2 GO:GO:0005694 GO:GO:0008270 GO:GO:0006265
            SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
            PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
            Gene3D:1.10.290.10 EMBL:BX649547 EMBL:BX649440 IPI:IPI00489703
            ProteinModelPortal:F1R242 Ensembl:ENSDART00000102492 Bgee:F1R242
            Uniprot:F1R242
        Length = 1009

 Score = 102 (41.0 bits), Expect = 0.00030, P = 0.00030
 Identities = 22/46 (47%), Positives = 27/46 (58%)

Query:    21 LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLTLNLNGE 66
             L   LISYG CQ PTLGF VER   I+ F PE ++ + +    N E
Sbjct:   231 LSDQLISYGSCQFPTLGFVVERFKAIQAFIPETFFKIKVVHEPNEE 276


>RGD|1309320 [details] [associations]
            symbol:Top3a "topoisomerase (DNA) III alpha" species:10116
            "Rattus norvegicus" [GO:0003917 "DNA topoisomerase type I activity"
            evidence=IEA;ISO] [GO:0005694 "chromosome" evidence=IEA]
            [GO:0006265 "DNA topological change" evidence=IEA;ISO] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0016605 "PML body"
            evidence=ISO] InterPro:IPR000380 InterPro:IPR003601
            InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
            InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
            Pfam:PF01131 Pfam:PF01396 Pfam:PF06839 PRINTS:PR00417 SMART:SM00436
            SMART:SM00437 Pfam:PF01751 RGD:1309320 InterPro:IPR006171
            GO:GO:0005694 GO:GO:0008270 GO:GO:0006265 SMART:SM00493
            GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
            InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
            GeneTree:ENSGT00530000063430 IPI:IPI00951502
            Ensembl:ENSRNOT00000068351 UCSC:RGD:1309320 ArrayExpress:D4A6J4
            Uniprot:D4A6J4
        Length = 949

 Score = 100 (40.3 bits), Expect = 0.00046, P = 0.00046
 Identities = 21/40 (52%), Positives = 25/40 (62%)

Query:    21 LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLT 60
             L   LISYG CQ PTLGF VER   I+ F PE +  + +T
Sbjct:   234 LAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHRIKVT 273


>MGI|MGI:1197527 [details] [associations]
            symbol:Top3a "topoisomerase (DNA) III alpha" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
            evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
            evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
            "chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
            evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0016605 "PML body" evidence=ISO] [GO:0016853 "isomerase
            activity" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA] InterPro:IPR000380 InterPro:IPR001878
            InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR010666
            InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
            InterPro:IPR013826 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
            Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343
            SMART:SM00436 SMART:SM00437 Pfam:PF01751 MGI:MGI:1197527
            InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0005654
            GO:GO:0046872 GO:GO:0016605 GO:GO:0008270 Reactome:REACT_120463
            Reactome:REACT_27235 GO:GO:0006265 PROSITE:PS50880 SMART:SM00493
            GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
            PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165
            Gene3D:1.10.290.10 CTD:7156 HOGENOM:HOG000184377 HOVERGEN:HBG056668
            OMA:KPRKCSL EMBL:AB006074 IPI:IPI00115672 PIR:T13951
            RefSeq:NP_033436.1 UniGene:Mm.477819 ProteinModelPortal:O70157
            SMR:O70157 IntAct:O70157 STRING:O70157 PhosphoSite:O70157
            PRIDE:O70157 Ensembl:ENSMUST00000002891 GeneID:21975 KEGG:mmu:21975
            InParanoid:O70157 NextBio:301678 Bgee:O70157 CleanEx:MM_TOP3A
            Genevestigator:O70157 GermOnline:ENSMUSG00000002814 Uniprot:O70157
        Length = 1003

 Score = 100 (40.3 bits), Expect = 0.00049, P = 0.00049
 Identities = 21/40 (52%), Positives = 25/40 (62%)

Query:    21 LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLT 60
             L   LISYG CQ PTLGF VER   I+ F PE +  + +T
Sbjct:   234 LAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIKVT 273


>UNIPROTKB|B4DK80 [details] [associations]
            symbol:TOP3A "DNA topoisomerase" species:9606 "Homo
            sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
            topological change" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
            evidence=IEA] InterPro:IPR000380 InterPro:IPR001878
            InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR010666
            InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
            InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
            Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343
            SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
            GO:GO:0005694 GO:GO:0008270 GO:GO:0006265 EMBL:AC127537
            SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
            InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
            UniGene:Hs.592115 HGNC:HGNC:11992 HOVERGEN:HBG056668 EMBL:AK296437
            IPI:IPI01011812 SMR:B4DK80 STRING:B4DK80 Ensembl:ENST00000542570
            UCSC:uc010vxs.1 Uniprot:B4DK80
        Length = 906

 Score = 99 (39.9 bits), Expect = 0.00055, P = 0.00055
 Identities = 21/40 (52%), Positives = 25/40 (62%)

Query:    21 LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLT 60
             L   LISYG CQ PTLGF VER   I+ F PE +  + +T
Sbjct:   139 LAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVT 178


>UNIPROTKB|E2RIS5 [details] [associations]
            symbol:TOP3A "DNA topoisomerase" species:9615 "Canis lupus
            familiaris" [GO:0016605 "PML body" evidence=IEA] [GO:0003917 "DNA
            topoisomerase type I activity" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0006265 "DNA topological change"
            evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
            InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
            InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
            InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
            InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
            PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343 SMART:SM00436
            SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
            GO:GO:0016605 GO:GO:0008270 GO:GO:0006265 SMART:SM00493
            GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
            InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
            GeneTree:ENSGT00530000063430 KO:K03165 CTD:7156 OMA:KPRKCSL
            EMBL:AAEX03003715 RefSeq:XP_546656.2 Ensembl:ENSCAFT00000029019
            GeneID:489537 KEGG:cfa:489537 NextBio:20862709 Uniprot:E2RIS5
        Length = 989

 Score = 99 (39.9 bits), Expect = 0.00061, P = 0.00061
 Identities = 21/40 (52%), Positives = 25/40 (62%)

Query:    21 LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLT 60
             L   LISYG CQ PTLGF VER   I+ F PE +  + +T
Sbjct:   234 LAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHKIKVT 273


>UNIPROTKB|Q13472 [details] [associations]
            symbol:TOP3A "DNA topoisomerase 3-alpha" species:9606 "Homo
            sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0008270 "zinc
            ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0016605 "PML body"
            evidence=IDA] [GO:0003917 "DNA topoisomerase type I activity"
            evidence=IDA] [GO:0006265 "DNA topological change" evidence=IDA]
            [GO:0003677 "DNA binding" evidence=TAS] [GO:0005634 "nucleus"
            evidence=TAS] [GO:0007126 "meiosis" evidence=TAS]
            InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
            InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
            InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
            InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
            PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343 SMART:SM00436
            SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
            GO:GO:0007126 GO:GO:0005694 GO:GO:0046872 GO:GO:0016605
            GO:GO:0008270 Reactome:REACT_111183 EMBL:CH471196 GO:GO:0006265
            PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
            Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
            SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165 EMBL:U43431 EMBL:HQ205026
            EMBL:HQ205027 EMBL:HQ205028 EMBL:HQ205029 EMBL:HQ205030
            EMBL:HQ205031 EMBL:HQ205032 EMBL:HQ205033 EMBL:HQ205034
            EMBL:HQ205035 EMBL:HQ205036 EMBL:HQ205037 EMBL:HQ205038
            EMBL:HQ205039 EMBL:HQ205040 EMBL:HQ205041 EMBL:HQ205042
            EMBL:HQ205043 EMBL:HQ205044 EMBL:HQ205045 EMBL:HQ205046
            EMBL:HQ205047 EMBL:HQ205048 EMBL:HQ205049 EMBL:HQ205050
            EMBL:HQ205051 EMBL:HQ205052 EMBL:HQ205053 EMBL:HQ205054
            EMBL:HQ205055 EMBL:HQ205056 EMBL:HQ205057 EMBL:HQ205058
            EMBL:HQ205059 EMBL:HQ205060 EMBL:HQ205061 EMBL:HQ205062
            EMBL:HQ205063 EMBL:HQ205064 EMBL:HQ205065 EMBL:AK292926
            EMBL:BC051748 IPI:IPI00013378 IPI:IPI00221295 RefSeq:NP_004609.1
            UniGene:Hs.592115 ProteinModelPortal:Q13472 SMR:Q13472
            DIP:DIP-33323N IntAct:Q13472 MINT:MINT-6610291 STRING:Q13472
            PhosphoSite:Q13472 DMDM:2501242 PaxDb:Q13472 PRIDE:Q13472
            Ensembl:ENST00000321105 Ensembl:ENST00000580095 GeneID:7156
            KEGG:hsa:7156 UCSC:uc002gsx.1 CTD:7156 GeneCards:GC17M018175
            HGNC:HGNC:11992 HPA:CAB002449 MIM:601243 neXtProt:NX_Q13472
            PharmGKB:PA36673 HOGENOM:HOG000184377 HOVERGEN:HBG056668
            InParanoid:Q13472 OMA:KPRKCSL OrthoDB:EOG4K6G3F PhylomeDB:Q13472
            GenomeRNAi:7156 NextBio:28002 ArrayExpress:Q13472 Bgee:Q13472
            CleanEx:HS_TOP3A Genevestigator:Q13472 GermOnline:ENSG00000177302
            Uniprot:Q13472
        Length = 1001

 Score = 99 (39.9 bits), Expect = 0.00062, P = 0.00062
 Identities = 21/40 (52%), Positives = 25/40 (62%)

Query:    21 LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLT 60
             L   LISYG CQ PTLGF VER   I+ F PE +  + +T
Sbjct:   234 LAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVT 273


>UNIPROTKB|F1MGY1 [details] [associations]
            symbol:TOP3A "DNA topoisomerase" species:9913 "Bos taurus"
            [GO:0016605 "PML body" evidence=IEA] [GO:0003917 "DNA topoisomerase
            type I activity" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
            [GO:0005694 "chromosome" evidence=IEA] InterPro:IPR000380
            InterPro:IPR001878 InterPro:IPR003601 InterPro:IPR003602
            InterPro:IPR010666 InterPro:IPR013497 InterPro:IPR013498
            InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
            Pfam:PF01131 Pfam:PF01396 Pfam:PF06839 PRINTS:PR00417
            PROSITE:PS00396 SMART:SM00343 SMART:SM00436 SMART:SM00437
            Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694 GO:GO:0016605
            GO:GO:0008270 GO:GO:0006265 SMART:SM00493 GO:GO:0003917
            Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
            PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
            OMA:KPRKCSL EMBL:DAAA02048987 EMBL:DAAA02048988 IPI:IPI00827029
            UniGene:Bt.103042 Ensembl:ENSBTAT00000022721 Uniprot:F1MGY1
        Length = 1002

 Score = 99 (39.9 bits), Expect = 0.00062, P = 0.00062
 Identities = 21/40 (52%), Positives = 25/40 (62%)

Query:    21 LDASLISYGPCQTPTLGFCVERHDKIRTFKPEPYWLLDLT 60
             L   LISYG CQ PTLGF VER   I+ F PE +  + +T
Sbjct:   234 LAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIRVT 273


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.142   0.456    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       69        69   0.00091  102 3  11 22  0.36    29
                                                     29  0.39    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  34
  No. of states in DFA:  541 (58 KB)
  Total size of DFA:  111 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  7.13u 0.09s 7.22t   Elapsed:  00:00:06
  Total cpu time:  7.13u 0.09s 7.22t   Elapsed:  00:00:07
  Start:  Thu Aug 15 11:49:55 2013   End:  Thu Aug 15 11:50:02 2013

the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with TOP3B TOP3B TOP3B DNA topoisomerase 3-beta-1	protein from Homo sapiens	2.8e-18
BLAST match view associations BLAST with TOP3B TOP3B TOP3B DNA topoisomerase	protein from Sus scrofa	1.4e-17
BLAST match view associations BLAST with TOP3B TOP3B TOP3B DNA topoisomerase 3-beta-1	protein from Homo sapiens	1.4e-17
BLAST match view associations BLAST with Top3b Top3b Top3b topoisomerase (DNA) III beta	protein from Mus musculus	2.3e-17
BLAST match view associations BLAST with Top3b Top3b Top3b topoisomerase (DNA) III beta	gene from Rattus norvegicus	2.3e-17
BLAST match view associations BLAST with TOP3B TOP3B TOP3B DNA topoisomerase	protein from Gallus gallus	4.7e-17
BLAST match view associations BLAST with TOP3B TOP3B TOP3B DNA topoisomerase	protein from Canis lupus familiaris	4.7e-17
BLAST match view associations BLAST with top3b top3b top3b topoisomerase (DNA) III beta	gene_product from Danio rerio	3.4e-16
BLAST match view associations BLAST with Top3beta Top3beta Top3beta Topoisomerase 3beta	protein from Drosophila melanogaster	2.5e-15
BLAST match view associations BLAST with Y48C3A.14 Y48C3A.14 Y48C3A.14	gene from Caenorhabditis elegans	4.0e-15
BLAST match view associations BLAST with TOP3B TOP3B TOP3B DNA topoisomerase	protein from Homo sapiens	7.1e-14
BLAST match view associations BLAST with AT2G32000 AT2G32000 AT2G32000	protein from Arabidopsis thaliana	3.1e-12
BLAST match view associations BLAST with TOP3 TOP3 TOP3 DNA Topoisomerase III	gene from Saccharomyces cerevisiae	7.8e-07
BLAST match view associations BLAST with top3 top3 top3 DNA topoisomerase III	gene from Dictyostelium discoideum	1.4e-06
BLAST match view associations BLAST with orf19.5934 orf19.5934 orf19.5934	gene_product from Candida albicans	1.5e-06
BLAST match view associations BLAST with PF13_0251 PF13_0251 PF13_0251 DNA topoisomerase III, putative	gene from Plasmodium falciparum	2.3e-06
BLAST match view associations BLAST with PF13_0251 PF13_0251 PF13_0251 DNA topoisomerase III, putative	protein from Plasmodium falciparum 3D7	2.3e-06
BLAST match view associations BLAST with TOP3A TOP3A TOP3A AT5G63920	protein from Arabidopsis thaliana	8.7e-06
BLAST match view associations BLAST with top-3 top-3 top-3	gene from Caenorhabditis elegans	4.9e-05
BLAST match view associations BLAST with Top3alpha Top3alpha Top3alpha Topoisomerase 3alpha	protein from Drosophila melanogaster	5.4e-05
BLAST match view associations BLAST with BA_1905 BA_1905 BA_1905 DNA topoisomerase III	protein from Bacillus anthracis str. Ames	0.00016
BLAST match view associations BLAST with TOP3A TOP3A TOP3A DNA topoisomerase	protein from Gallus gallus	0.00019
BLAST match view associations BLAST with TOP3A TOP3A TOP3A DNA topoisomerase 3-alpha	protein from Homo sapiens	0.00026
BLAST match view associations BLAST with top3a top3a top3a topoisomerase (DNA) III alpha	gene_product from Danio rerio	0.00030
BLAST match view associations BLAST with Top3a Top3a Top3a topoisomerase (DNA) III alpha	gene from Rattus norvegicus	0.00046
BLAST match view associations BLAST with Top3a Top3a Top3a topoisomerase (DNA) III alpha	protein from Mus musculus	0.00049
BLAST match view associations BLAST with TOP3A TOP3A TOP3A DNA topoisomerase	protein from Homo sapiens	0.00055
BLAST match view associations BLAST with TOP3A TOP3A TOP3A DNA topoisomerase	protein from Canis lupus familiaris	0.00061
BLAST match view associations BLAST with TOP3A TOP3A TOP3A DNA topoisomerase 3-alpha	protein from Homo sapiens	0.00062
BLAST match view associations BLAST with TOP3A TOP3A TOP3A DNA topoisomerase	protein from Bos taurus	0.00062