BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8719
(33 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VNV3|DDX1_DROME ATP-dependent RNA helicase Ddx1 OS=Drosophila melanogaster GN=Ddx1
PE=2 SV=1
Length = 727
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/21 (85%), Positives = 20/21 (95%)
Query: 1 MDRALIFCRTKLDCDNLERYL 21
MDRA+IFCRTK DCDNLER+L
Sbjct: 505 MDRAIIFCRTKQDCDNLERFL 525
>sp|Q5XH91|DDX1_XENTR ATP-dependent RNA helicase DDX1 OS=Xenopus tropicalis GN=ddx1 PE=2
SV=1
Length = 740
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/21 (76%), Positives = 20/21 (95%)
Query: 1 MDRALIFCRTKLDCDNLERYL 21
MD+A+IFCRTKLDCDN+E+Y
Sbjct: 506 MDQAIIFCRTKLDCDNMEQYF 526
>sp|A2VD92|DDX1_XENLA ATP-dependent RNA helicase DDX1 OS=Xenopus laevis GN=ddx1 PE=2 SV=1
Length = 740
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/21 (76%), Positives = 20/21 (95%)
Query: 1 MDRALIFCRTKLDCDNLERYL 21
MD+A+IFCRTKLDCDN+E+Y
Sbjct: 506 MDQAIIFCRTKLDCDNMEQYF 526
>sp|Q641Y8|DDX1_RAT ATP-dependent RNA helicase DDX1 OS=Rattus norvegicus GN=Ddx1 PE=2
SV=1
Length = 740
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/21 (76%), Positives = 20/21 (95%)
Query: 1 MDRALIFCRTKLDCDNLERYL 21
MD+A+IFCRTK+DCDNLE+Y
Sbjct: 506 MDQAIIFCRTKIDCDNLEQYF 526
>sp|Q5NVJ8|DDX1_PONAB ATP-dependent RNA helicase DDX1 OS=Pongo abelii GN=DDX1 PE=2 SV=1
Length = 740
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/21 (76%), Positives = 20/21 (95%)
Query: 1 MDRALIFCRTKLDCDNLERYL 21
MD+A+IFCRTK+DCDNLE+Y
Sbjct: 506 MDQAIIFCRTKIDCDNLEQYF 526
>sp|Q91VR5|DDX1_MOUSE ATP-dependent RNA helicase DDX1 OS=Mus musculus GN=Ddx1 PE=1 SV=1
Length = 740
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/21 (76%), Positives = 20/21 (95%)
Query: 1 MDRALIFCRTKLDCDNLERYL 21
MD+A+IFCRTK+DCDNLE+Y
Sbjct: 506 MDQAIIFCRTKIDCDNLEQYF 526
>sp|Q4R7L5|DDX1_MACFA ATP-dependent RNA helicase DDX1 OS=Macaca fascicularis GN=DDX1 PE=2
SV=1
Length = 740
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/21 (76%), Positives = 20/21 (95%)
Query: 1 MDRALIFCRTKLDCDNLERYL 21
MD+A+IFCRTK+DCDNLE+Y
Sbjct: 506 MDQAIIFCRTKIDCDNLEQYF 526
>sp|Q92499|DDX1_HUMAN ATP-dependent RNA helicase DDX1 OS=Homo sapiens GN=DDX1 PE=1 SV=2
Length = 740
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/21 (76%), Positives = 20/21 (95%)
Query: 1 MDRALIFCRTKLDCDNLERYL 21
MD+A+IFCRTK+DCDNLE+Y
Sbjct: 506 MDQAIIFCRTKIDCDNLEQYF 526
>sp|Q0IIK5|DDX1_BOVIN ATP-dependent RNA helicase DDX1 OS=Bos taurus GN=DDX1 PE=2 SV=1
Length = 740
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/21 (76%), Positives = 20/21 (95%)
Query: 1 MDRALIFCRTKLDCDNLERYL 21
MD+A+IFCRTK+DCDNLE+Y
Sbjct: 506 MDQAIIFCRTKIDCDNLEQYF 526
>sp|Q90WU3|DDX1_CHICK ATP-dependent RNA helicase DDX1 OS=Gallus gallus GN=DDX1 PE=1 SV=1
Length = 740
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 20/21 (95%)
Query: 1 MDRALIFCRTKLDCDNLERYL 21
MD+A+IFCRTK+DCDN+E+Y
Sbjct: 506 MDQAIIFCRTKIDCDNMEQYF 526
>sp|Q24731|DDX1_DROVI ATP-dependent RNA helicase Ddx1 (Fragment) OS=Drosophila virilis
GN=Ddx1 PE=3 SV=1
Length = 400
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/22 (77%), Positives = 21/22 (95%)
Query: 1 MDRALIFCRTKLDCDNLERYLN 22
MDRA+IFCRTK DCDNLE++L+
Sbjct: 137 MDRAIIFCRTKQDCDNLEQHLS 158
>sp|Q55CP6|DDX1_DICDI Probable ATP-dependent RNA helicase ddx1 OS=Dictyostelium
discoideum GN=ddx1 PE=3 SV=1
Length = 765
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 19/21 (90%)
Query: 1 MDRALIFCRTKLDCDNLERYL 21
MD+A+IF RT+LDCD++ ++L
Sbjct: 534 MDQAIIFARTRLDCDHIHQFL 554
>sp|O39929|POLG_HCVED Genome polyprotein OS=Hepatitis C virus genotype 4a (isolate ED43)
PE=1 SV=3
Length = 3008
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 3 RALIFCRTKLDCDNLERYLNSIDRRLIYYF 32
R LIFC +K CD L R L S+ + Y+
Sbjct: 1389 RHLIFCHSKKKCDELARQLTSLGLNAVAYY 1418
>sp|O39928|POLG_HCVEV Genome polyprotein OS=Hepatitis C virus genotype 5a (isolate EUH1480)
PE=1 SV=3
Length = 3014
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 3 RALIFCRTKLDCDNLERYLNSIDRRLIYYF 32
R LIFC +K CD L + L S+ + Y+
Sbjct: 1390 RHLIFCHSKKKCDELAKQLTSLGVNAVAYY 1419
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.337 0.150 0.473
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,763,375
Number of Sequences: 539616
Number of extensions: 174314
Number of successful extensions: 1046
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1032
Number of HSP's gapped (non-prelim): 14
length of query: 33
length of database: 191,569,459
effective HSP length: 8
effective length of query: 25
effective length of database: 187,252,531
effective search space: 4681313275
effective search space used: 4681313275
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 55 (25.8 bits)