Query psy8719
Match_columns 33
No_of_seqs 109 out of 383
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 17:29:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rb4_A ATP-dependent RNA helic 98.0 1.4E-05 4.7E-10 42.9 4.4 30 2-31 35-64 (175)
2 2hjv_A ATP-dependent RNA helic 97.9 1.6E-05 5.5E-10 42.3 4.3 30 2-31 36-65 (163)
3 1t5i_A C_terminal domain of A 97.9 1.7E-05 5.7E-10 42.8 4.3 30 2-31 32-61 (172)
4 1fuk_A Eukaryotic initiation f 97.9 2.5E-05 8.5E-10 41.5 4.6 30 2-31 31-60 (165)
5 2jgn_A DBX, DDX3, ATP-dependen 97.8 3.9E-05 1.3E-09 42.0 4.4 30 2-31 47-76 (185)
6 3eaq_A Heat resistant RNA depe 97.7 4.3E-05 1.5E-09 42.5 4.1 30 2-31 32-61 (212)
7 2p6n_A ATP-dependent RNA helic 97.7 4.7E-05 1.6E-09 42.0 4.0 30 2-31 55-84 (191)
8 3oiy_A Reverse gyrase helicase 97.6 8.5E-05 2.9E-09 43.5 3.9 28 2-29 253-280 (414)
9 2i4i_A ATP-dependent RNA helic 97.5 0.00014 5E-09 41.9 4.3 30 2-31 277-306 (417)
10 3fht_A ATP-dependent RNA helic 97.5 0.00015 5.1E-09 41.5 4.2 30 2-31 267-296 (412)
11 3pey_A ATP-dependent RNA helic 97.5 0.00016 5.4E-09 41.0 4.2 30 2-31 244-273 (395)
12 3i32_A Heat resistant RNA depe 97.5 0.00016 5.4E-09 42.9 4.3 30 2-31 29-58 (300)
13 2yjt_D ATP-dependent RNA helic 96.6 1.7E-05 5.7E-10 42.5 0.0 29 2-30 31-59 (170)
14 2j0s_A ATP-dependent RNA helic 97.4 0.00018 6.1E-09 41.6 4.2 30 2-31 277-306 (410)
15 1oyw_A RECQ helicase, ATP-depe 97.4 0.00017 5.8E-09 44.8 4.2 30 2-31 237-266 (523)
16 2v1x_A ATP-dependent DNA helic 97.4 0.00021 7.1E-09 45.4 4.3 30 2-31 268-297 (591)
17 3o8b_A HCV NS3 protease/helica 97.4 0.00022 7.4E-09 46.9 4.3 30 2-31 397-426 (666)
18 1xti_A Probable ATP-dependent 97.4 0.00029 9.8E-09 40.2 4.3 30 2-31 251-280 (391)
19 1s2m_A Putative ATP-dependent 97.3 0.00029 9.9E-09 40.5 4.1 30 2-31 259-288 (400)
20 1hv8_A Putative ATP-dependent 97.3 0.00034 1.2E-08 39.3 4.2 30 2-31 239-268 (367)
21 1yks_A Genome polyprotein [con 97.3 0.00029 9.9E-09 42.9 4.0 29 2-30 178-206 (440)
22 2whx_A Serine protease/ntpase/ 97.3 0.00029 1E-08 45.1 4.2 30 2-31 356-385 (618)
23 3eiq_A Eukaryotic initiation f 97.3 0.00022 7.6E-09 40.9 3.2 30 2-31 281-310 (414)
24 2db3_A ATP-dependent RNA helic 97.3 0.00031 1.1E-08 42.1 4.0 28 3-30 302-329 (434)
25 2z83_A Helicase/nucleoside tri 97.2 0.00043 1.5E-08 42.2 4.2 28 2-29 191-218 (459)
26 2v6i_A RNA helicase; membrane, 97.2 0.00049 1.7E-08 41.7 4.2 29 2-30 172-200 (431)
27 2jlq_A Serine protease subunit 97.2 0.00053 1.8E-08 41.6 4.1 27 2-28 189-215 (451)
28 3i5x_A ATP-dependent RNA helic 97.1 0.00075 2.6E-08 41.0 4.1 29 2-30 340-371 (563)
29 1wp9_A ATP-dependent RNA helic 97.0 0.00096 3.3E-08 38.0 4.2 29 2-30 362-390 (494)
30 2wv9_A Flavivirin protease NS2 97.0 0.00074 2.5E-08 43.8 4.1 30 2-31 411-440 (673)
31 1c4o_A DNA nucleotide excision 97.0 0.00091 3.1E-08 43.0 4.3 30 2-31 440-469 (664)
32 2ykg_A Probable ATP-dependent 97.0 0.00075 2.6E-08 41.8 3.8 24 2-25 399-422 (696)
33 2d7d_A Uvrabc system protein B 97.0 0.001 3.5E-08 42.7 4.3 29 2-30 446-474 (661)
34 3sqw_A ATP-dependent RNA helic 96.9 0.0013 4.3E-08 40.6 4.1 28 2-29 289-319 (579)
35 3tbk_A RIG-I helicase domain; 96.8 0.0009 3.1E-08 39.5 3.1 24 2-25 390-413 (555)
36 4gl2_A Interferon-induced heli 96.8 0.00096 3.3E-08 41.3 3.3 23 2-24 401-423 (699)
37 3h1t_A Type I site-specific re 96.8 0.0014 4.6E-08 40.4 3.5 25 2-26 440-464 (590)
38 1fuu_A Yeast initiation factor 96.7 0.00023 7.7E-09 40.6 0.0 29 2-30 260-288 (394)
39 1tf5_A Preprotein translocase 96.7 0.0014 4.9E-08 44.5 3.6 27 2-28 433-459 (844)
40 3fho_A ATP-dependent RNA helic 96.6 0.00088 3E-08 41.0 1.9 29 2-30 358-386 (508)
41 4ddu_A Reverse gyrase; topoiso 96.6 0.0022 7.4E-08 43.6 3.8 28 2-29 310-337 (1104)
42 3fmp_B ATP-dependent RNA helic 96.5 0.00038 1.3E-08 41.6 0.0 29 2-30 334-362 (479)
43 3jux_A Protein translocase sub 96.5 0.0024 8.2E-08 43.6 3.8 27 2-28 475-501 (822)
44 2fsf_A Preprotein translocase 96.3 0.0037 1.3E-07 42.6 3.7 27 2-28 442-468 (853)
45 4a2p_A RIG-I, retinoic acid in 96.3 0.0033 1.1E-07 37.3 3.0 23 2-24 391-413 (556)
46 1nkt_A Preprotein translocase 96.1 0.0057 1.9E-07 42.1 3.7 27 2-28 461-487 (922)
47 2va8_A SSO2462, SKI2-type heli 96.0 0.0063 2.1E-07 38.3 3.5 24 2-25 253-276 (715)
48 2zj8_A DNA helicase, putative 96.0 0.0058 2E-07 38.7 3.1 23 2-24 238-260 (720)
49 1z5z_A Helicase of the SNF2/RA 95.8 0.012 3.9E-07 34.1 3.8 28 2-29 113-141 (271)
50 1gku_B Reverse gyrase, TOP-RG; 95.8 0.0056 1.9E-07 41.2 2.6 23 2-24 276-298 (1054)
51 2p6r_A Afuhel308 helicase; pro 95.8 0.0079 2.7E-07 38.0 3.1 23 2-24 243-265 (702)
52 4a2w_A RIG-I, retinoic acid in 95.7 0.0099 3.4E-07 39.3 3.4 23 2-24 632-654 (936)
53 2z0m_A 337AA long hypothetical 95.6 0.0032 1.1E-07 35.0 0.8 21 2-22 221-241 (337)
54 4a2q_A RIG-I, retinoic acid in 95.3 0.015 5E-07 37.4 3.3 23 2-24 632-654 (797)
55 4a4z_A Antiviral helicase SKI2 95.2 0.0082 2.8E-07 40.4 1.9 25 2-26 337-361 (997)
56 2xau_A PRE-mRNA-splicing facto 95.2 0.024 8.1E-07 37.2 3.9 22 2-23 304-325 (773)
57 3dmq_A RNA polymerase-associat 95.1 0.016 5.5E-07 38.6 3.1 29 2-30 504-533 (968)
58 2xgj_A ATP-dependent RNA helic 95.0 0.011 3.9E-07 39.8 2.0 25 2-26 344-368 (1010)
59 3l9o_A ATP-dependent RNA helic 94.8 0.01 3.4E-07 40.4 1.5 24 2-25 442-465 (1108)
60 4f92_B U5 small nuclear ribonu 94.7 0.016 5.6E-07 41.1 2.3 22 2-23 318-339 (1724)
61 3rc3_A ATP-dependent RNA helic 94.7 0.039 1.3E-06 36.1 3.9 29 3-31 322-350 (677)
62 1z63_A Helicase of the SNF2/RA 94.4 0.047 1.6E-06 32.6 3.6 29 2-30 342-371 (500)
63 1z3i_X Similar to RAD54-like; 94.4 0.064 2.2E-06 34.1 4.4 29 2-30 417-445 (644)
64 2jtq_A Phage shock protein E; 94.0 0.16 5.3E-06 24.1 4.4 30 2-31 42-71 (85)
65 1wv9_A Rhodanese homolog TT165 93.8 0.13 4.5E-06 24.9 4.0 29 3-32 55-83 (94)
66 2eyq_A TRCF, transcription-rep 93.8 0.053 1.8E-06 37.0 3.3 23 2-24 813-835 (1151)
67 3foj_A Uncharacterized protein 93.5 0.19 6.7E-06 24.5 4.4 30 2-32 57-86 (100)
68 3eme_A Rhodanese-like domain p 93.4 0.18 6.3E-06 24.7 4.2 30 2-32 57-86 (103)
69 3hix_A ALR3790 protein; rhodan 93.2 0.2 6.8E-06 24.9 4.1 30 3-32 54-83 (106)
70 2fwr_A DNA repair protein RAD2 93.0 0.025 8.5E-07 33.6 0.6 21 2-22 350-370 (472)
71 1gmx_A GLPE protein; transfera 92.9 0.18 6.3E-06 24.9 3.7 31 2-32 59-89 (108)
72 3gk5_A Uncharacterized rhodane 92.5 0.26 9E-06 24.5 4.1 30 2-32 56-85 (108)
73 2hhg_A Hypothetical protein RP 92.3 0.27 9.3E-06 25.0 4.0 31 2-32 87-117 (139)
74 2k0z_A Uncharacterized protein 92.2 0.28 9.5E-06 24.5 3.9 29 2-31 57-85 (110)
75 2fsx_A RV0390, COG0607: rhodan 92.1 0.23 7.7E-06 25.9 3.6 30 3-32 82-111 (148)
76 2w00_A HSDR, R.ECOR124I; ATP-b 92.1 0.1 3.4E-06 35.7 2.7 23 3-25 539-561 (1038)
77 3flh_A Uncharacterized protein 91.7 0.27 9.2E-06 25.0 3.6 29 3-32 73-103 (124)
78 3mwy_W Chromo domain-containin 91.3 0.29 9.8E-06 31.8 4.0 29 2-30 573-601 (800)
79 4f92_B U5 small nuclear ribonu 91.3 0.17 5.9E-06 36.1 3.2 22 2-23 1156-1177(1724)
80 3ilm_A ALR3790 protein; rhodan 91.1 0.46 1.6E-05 24.9 4.2 31 2-32 57-87 (141)
81 3g5j_A Putative ATP/GTP bindin 91.0 0.48 1.6E-05 23.5 4.0 30 2-32 90-120 (134)
82 1qxn_A SUD, sulfide dehydrogen 90.9 0.32 1.1E-05 25.3 3.4 31 2-32 83-113 (137)
83 3d1p_A Putative thiosulfate su 90.9 0.47 1.6E-05 24.2 4.0 30 3-32 93-122 (139)
84 1tq1_A AT5G66040, senescence-a 90.7 0.29 9.8E-06 25.0 3.1 30 2-31 83-112 (129)
85 2i82_A Ribosomal large subunit 90.3 0.51 1.8E-05 26.4 4.1 29 3-31 67-95 (217)
86 3gon_A Phosphomevalonate kinas 90.3 0.58 2E-05 26.4 4.4 29 3-31 298-326 (335)
87 1vee_A Proline-rich protein fa 90.1 0.52 1.8E-05 24.2 3.8 29 3-31 76-104 (134)
88 1v9k_A Ribosomal large subunit 90.0 0.56 1.9E-05 26.5 4.1 29 3-31 58-86 (228)
89 3nhv_A BH2092 protein; alpha-b 87.9 1 3.5E-05 23.5 4.0 30 2-32 73-104 (144)
90 2oca_A DAR protein, ATP-depend 87.6 0.79 2.7E-05 27.4 3.8 25 3-28 350-374 (510)
91 2eg4_A Probable thiosulfate su 86.9 1.2 4.2E-05 24.4 4.1 30 2-32 185-214 (230)
92 3h11_A CAsp8 and FADD-like apo 86.5 0.28 9.7E-06 29.0 1.4 28 2-29 44-71 (272)
93 1v9f_A Ribosomal large subunit 86.2 1.3 4.3E-05 26.2 4.1 29 3-31 143-171 (325)
94 1e0c_A Rhodanese, sulfurtransf 85.4 1.4 4.7E-05 24.6 3.9 31 2-32 224-254 (271)
95 3i2v_A Adenylyltransferase and 85.4 1.7 5.7E-05 21.4 3.8 22 3-24 74-95 (127)
96 3iwh_A Rhodanese-like domain p 85.2 1.7 6E-05 21.7 3.9 26 3-28 58-83 (103)
97 3h11_B Caspase-8; cell death, 84.2 1.6 5.4E-05 25.6 3.9 21 10-30 47-67 (271)
98 1urh_A 3-mercaptopyruvate sulf 83.3 1.6 5.6E-05 24.4 3.6 31 2-32 231-261 (280)
99 4f67_A UPF0176 protein LPG2838 83.0 1.9 6.7E-05 25.3 3.9 31 2-32 182-212 (265)
100 1uar_A Rhodanese; sulfurtransf 82.9 1.8 6.2E-05 24.2 3.7 30 3-32 81-111 (285)
101 1b4b_A Arginine repressor; cor 82.3 2.2 7.5E-05 20.6 3.4 22 2-23 48-69 (71)
102 1e0c_A Rhodanese, sulfurtransf 81.8 2.8 9.6E-05 23.3 4.1 30 3-32 83-113 (271)
103 1uar_A Rhodanese; sulfurtransf 81.3 3.3 0.00011 23.2 4.3 31 2-32 234-265 (285)
104 2eg4_A Probable thiosulfate su 81.0 2.3 8E-05 23.2 3.6 30 2-32 62-92 (230)
105 3re1_A Uroporphyrinogen-III sy 80.8 2.8 9.6E-05 23.7 4.0 28 2-29 14-41 (269)
106 3e4c_A Caspase-1; zymogen, inf 80.8 3 0.0001 24.9 4.3 27 3-29 62-99 (302)
107 1rhs_A Sulfur-substituted rhod 80.5 2.3 7.7E-05 24.2 3.5 30 3-32 242-271 (296)
108 1urh_A 3-mercaptopyruvate sulf 80.4 2.8 9.4E-05 23.5 3.8 30 3-32 88-118 (280)
109 3dmn_A Putative DNA helicase; 80.3 3.2 0.00011 22.1 3.9 27 2-28 62-88 (174)
110 3hzu_A Thiosulfate sulfurtrans 79.8 3.9 0.00013 23.8 4.5 31 2-32 112-143 (318)
111 1xxa_A ARGR, arginine represso 78.7 2.3 7.8E-05 21.0 2.8 23 2-24 51-73 (78)
112 3sir_A Caspase; hydrolase; 2.6 78.4 2.9 9.9E-05 24.3 3.6 27 3-29 22-61 (259)
113 2zfz_A Arginine repressor; DNA 78.4 2.5 8.6E-05 20.7 2.9 22 2-23 56-77 (79)
114 2p5m_A Arginine repressor; alp 78.1 3 0.0001 20.6 3.2 22 2-23 60-81 (83)
115 3ics_A Coenzyme A-disulfide re 77.6 3.9 0.00013 25.1 4.1 30 2-32 542-571 (588)
116 2h54_A Caspase-1; allosteric s 77.0 5 0.00017 22.3 4.2 27 3-29 45-82 (178)
117 1t35_A Hypothetical protein YV 76.8 5.1 0.00017 22.3 4.2 30 1-30 1-38 (191)
118 3od5_A Caspase-6; caspase doma 76.7 4.7 0.00016 23.6 4.2 28 3-30 23-64 (278)
119 3aay_A Putative thiosulfate su 76.6 4.9 0.00017 22.4 4.1 31 2-32 227-258 (277)
120 2wlr_A Putative thiosulfate su 76.5 4.6 0.00016 24.2 4.2 31 2-32 359-389 (423)
121 4es6_A Uroporphyrinogen-III sy 76.3 4.7 0.00016 22.3 3.9 27 3-29 7-33 (254)
122 3ntd_A FAD-dependent pyridine 75.9 5 0.00017 24.3 4.2 29 2-31 525-553 (565)
123 3aay_A Putative thiosulfate su 75.8 6.3 0.00021 21.9 4.4 30 3-32 79-109 (277)
124 1t1v_A SH3BGRL3, SH3 domain-bi 75.8 1.6 5.6E-05 20.9 1.7 22 8-29 15-36 (93)
125 2j32_A Caspase-3; Pro-caspase3 74.9 4.9 0.00017 23.1 3.9 27 3-29 18-58 (250)
126 2dko_A Caspase-3; low barrier 74.7 5.6 0.00019 21.5 3.9 27 3-29 18-58 (146)
127 1u6t_A SH3 domain-binding glut 74.3 1.9 6.6E-05 23.0 1.9 24 7-30 12-35 (121)
128 2wlr_A Putative thiosulfate su 74.2 5.6 0.00019 23.9 4.1 29 3-31 205-233 (423)
129 1yt8_A Thiosulfate sulfurtrans 73.6 5 0.00017 24.9 3.9 31 2-32 64-94 (539)
130 3tp9_A Beta-lactamase and rhod 73.4 5.1 0.00018 24.2 3.8 30 2-31 428-457 (474)
131 3sbx_A Putative uncharacterize 73.3 6.1 0.00021 22.3 3.9 28 3-30 15-49 (189)
132 2pg9_A Phosphomevalonate kinas 72.6 6.6 0.00022 23.0 4.1 28 3-30 300-327 (337)
133 4ehd_A Caspase-3; caspase, apo 71.8 6.2 0.00021 23.2 3.9 28 3-30 46-87 (277)
134 2ct6_A SH3 domain-binding glut 71.8 2.5 8.6E-05 21.1 1.9 23 8-30 21-43 (111)
135 3mw8_A Uroporphyrinogen-III sy 71.7 2.9 9.8E-05 23.0 2.3 27 3-29 2-28 (240)
136 1m72_A Caspase-1; caspase, cys 71.4 8 0.00027 22.6 4.3 27 3-29 34-73 (272)
137 3hzu_A Thiosulfate sulfurtrans 71.4 4.7 0.00016 23.4 3.3 30 3-32 261-291 (318)
138 1wcw_A Uroporphyrinogen III sy 71.3 6.6 0.00022 21.6 3.7 27 3-30 9-35 (261)
139 2eyq_A TRCF, transcription-rep 71.0 3.3 0.00011 28.4 2.9 28 3-30 387-414 (1151)
140 2oml_A Ribosomal large subunit 70.8 3.9 0.00013 22.3 2.7 27 3-31 56-82 (189)
141 3f6r_A Flavodoxin; FMN binding 70.2 5.2 0.00018 20.1 3.0 19 9-27 14-32 (148)
142 2gxq_A Heat resistant RNA depe 69.2 6.4 0.00022 20.3 3.2 25 3-27 74-98 (207)
143 3olh_A MST, 3-mercaptopyruvate 69.1 4.3 0.00015 23.4 2.7 29 3-31 256-284 (302)
144 2fp3_A Caspase NC; apoptosis, 68.7 7 0.00024 23.4 3.7 27 3-29 63-101 (316)
145 3p45_A Caspase-6; protease, hu 68.6 10 0.00035 21.4 4.2 28 3-30 46-87 (179)
146 2y7e_A 3-keto-5-aminohexanoate 68.6 6.8 0.00023 23.5 3.6 26 5-30 123-148 (282)
147 1u69_A Hypothetical protein; s 68.3 8.5 0.00029 21.1 3.7 27 3-29 79-105 (163)
148 2oi2_A Mevalonate kinase; enzy 67.4 12 0.0004 20.7 4.2 27 3-29 261-287 (292)
149 3hjh_A Transcription-repair-co 67.4 9.6 0.00033 24.0 4.2 30 3-32 41-70 (483)
150 3qua_A Putative uncharacterize 66.9 11 0.00039 21.3 4.2 28 3-30 24-58 (199)
151 2nn3_C Caspase-1; cysteine pro 66.8 11 0.00037 22.7 4.3 27 3-29 62-101 (310)
152 3d8t_A Uroporphyrinogen-III sy 66.0 7.4 0.00025 22.0 3.3 27 3-30 34-60 (286)
153 3no5_A Uncharacterized protein 65.9 7.4 0.00025 23.2 3.4 26 5-30 118-143 (275)
154 4fn4_A Short chain dehydrogena 65.6 14 0.00049 21.1 4.5 29 3-31 33-61 (254)
155 1qtn_A Caspase-8; apoptosis, d 65.3 11 0.00039 20.6 3.9 20 10-29 53-72 (164)
156 2j6p_A SB(V)-AS(V) reductase; 65.2 12 0.00042 19.3 3.8 28 4-31 70-105 (152)
157 1c25_A CDC25A; hydrolase, cell 65.2 11 0.00037 19.4 3.6 27 5-31 93-130 (161)
158 3e02_A Uncharacterized protein 64.3 7.6 0.00026 23.5 3.2 27 4-30 145-171 (311)
159 2oxc_A Probable ATP-dependent 64.0 9 0.00031 20.5 3.3 25 2-26 93-117 (230)
160 3c6c_A 3-keto-5-aminohexanoate 64.0 8.4 0.00029 23.5 3.4 27 4-30 159-185 (316)
161 1f1j_A Caspase-7 protease; cas 63.9 7.6 0.00026 23.2 3.2 27 3-29 71-111 (305)
162 5nul_A Flavodoxin; electron tr 63.8 4.1 0.00014 20.3 1.7 19 9-27 11-29 (138)
163 1ydh_A AT5G11950; structural g 63.7 14 0.00048 21.1 4.2 30 1-30 9-46 (216)
164 1yt8_A Thiosulfate sulfurtrans 63.6 8.8 0.0003 23.8 3.5 31 2-32 431-461 (539)
165 1vec_A ATP-dependent RNA helic 63.2 9.4 0.00032 19.7 3.1 24 3-26 73-96 (206)
166 2pl3_A Probable ATP-dependent 62.9 9.3 0.00032 20.4 3.2 24 3-26 99-122 (236)
167 3bor_A Human initiation factor 62.8 9.5 0.00032 20.6 3.2 24 3-26 100-123 (237)
168 3chv_A Prokaryotic domain of u 62.8 8.2 0.00028 23.1 3.2 26 5-30 122-147 (284)
169 2ouc_A Dual specificity protei 62.5 12 0.00041 18.3 3.4 28 3-31 85-121 (142)
170 1t6n_A Probable ATP-dependent 62.4 9.2 0.00031 20.1 3.1 23 3-25 84-106 (220)
171 1c4o_A DNA nucleotide excision 62.2 13 0.00045 23.9 4.2 30 3-32 55-85 (664)
172 1sn9_A BBAT, tetrameric beta-B 62.0 5.9 0.0002 16.5 1.8 16 12-27 8-23 (26)
173 2d7d_A Uvrabc system protein B 61.8 13 0.00045 23.9 4.1 30 3-32 59-89 (661)
174 2hna_A Protein MIOC, flavodoxi 61.7 7.2 0.00025 19.7 2.5 20 8-27 13-32 (147)
175 1qde_A EIF4A, translation init 61.2 11 0.00038 19.7 3.3 24 3-26 84-107 (224)
176 3e49_A Uncharacterized protein 60.7 9.7 0.00033 23.1 3.2 27 4-30 145-171 (311)
177 2vl7_A XPD; helicase, unknown 60.6 3.7 0.00012 25.5 1.4 22 2-23 385-406 (540)
178 2olw_A Ribosomal large subunit 60.5 7.6 0.00026 21.8 2.6 27 3-31 84-110 (217)
179 1weh_A Conserved hypothetical 60.2 11 0.00037 20.6 3.2 30 1-30 1-38 (171)
180 2v3s_A Serine/threonine-protei 59.2 5.7 0.0002 21.1 1.8 21 6-26 22-42 (96)
181 1okg_A Possible 3-mercaptopyru 58.9 7.9 0.00027 23.2 2.6 29 3-31 248-276 (373)
182 2fz4_A DNA repair protein RAD2 58.9 19 0.00065 19.8 4.1 26 2-27 134-159 (237)
183 3sxu_A DNA polymerase III subu 58.7 7.5 0.00026 21.1 2.3 21 2-22 40-60 (150)
184 3dkp_A Probable ATP-dependent 58.7 12 0.00041 20.0 3.2 24 3-26 100-123 (245)
185 3s40_A Diacylglycerol kinase; 58.6 24 0.00081 20.3 4.6 33 1-33 8-47 (304)
186 3gv0_A Transcriptional regulat 58.4 17 0.00059 19.6 3.8 28 5-32 106-133 (288)
187 2fz5_A Flavodoxin; alpha/beta 58.3 9 0.00031 18.7 2.4 20 9-28 12-31 (137)
188 1uta_A FTSN, MSGA, cell divisi 58.1 8.8 0.0003 18.2 2.3 18 10-27 19-36 (81)
189 1v61_A RAC/CDC42 guanine nucle 58.1 10 0.00035 20.3 2.8 23 2-24 102-124 (132)
190 1x60_A Sporulation-specific N- 57.7 8.1 0.00028 18.0 2.1 18 9-26 54-71 (79)
191 2x7i_A Mevalonate kinase; tran 57.4 22 0.00075 19.9 4.2 27 3-29 275-301 (308)
192 1y9j_A SEC1 family domain cont 57.4 18 0.00062 19.9 3.8 28 3-31 94-122 (159)
193 3iuy_A Probable ATP-dependent 57.0 13 0.00044 19.7 3.1 23 3-25 96-118 (228)
194 1wrb_A DJVLGB; RNA helicase, D 56.9 8.8 0.0003 20.7 2.4 24 3-26 102-125 (253)
195 3fmo_B ATP-dependent RNA helic 56.8 12 0.00042 21.3 3.1 24 3-26 164-187 (300)
196 3lot_A Uncharacterized protein 56.6 12 0.00041 22.7 3.2 27 4-30 147-173 (314)
197 3jx9_A Putative phosphoheptose 56.4 15 0.00052 20.3 3.4 28 2-29 79-108 (170)
198 2ql9_A Caspase-7; cysteine pro 56.3 14 0.00046 20.7 3.2 27 3-29 46-86 (173)
199 2a4x_A Mitomycin-binding prote 56.0 16 0.00056 17.6 3.3 21 8-28 79-99 (138)
200 1wek_A Hypothetical protein TT 55.9 15 0.0005 21.0 3.3 29 2-30 38-74 (217)
201 3tg1_B Dual specificity protei 55.9 20 0.00067 18.5 3.8 25 3-27 95-128 (158)
202 1q0u_A Bstdead; DEAD protein, 55.8 14 0.00046 19.5 3.0 23 3-25 74-96 (219)
203 1b4a_A Arginine repressor; hel 55.6 17 0.00057 19.8 3.4 22 2-23 126-147 (149)
204 3gyb_A Transcriptional regulat 55.5 18 0.00062 19.3 3.5 28 5-32 97-124 (280)
205 1byk_A Protein (trehalose oper 54.9 20 0.00068 18.9 3.6 27 6-32 95-121 (255)
206 3pyf_A 4-diphosphocytidyl-2-C- 54.8 23 0.00078 20.6 4.1 25 3-27 260-284 (306)
207 2a5l_A Trp repressor binding p 54.3 21 0.00073 18.4 3.9 20 9-28 18-37 (200)
208 3o74_A Fructose transport syst 54.1 16 0.00056 19.2 3.2 28 5-32 99-126 (272)
209 1nw9_B Caspase 9, apoptosis-re 53.8 17 0.00058 21.0 3.4 27 3-29 23-63 (277)
210 1u0t_A Inorganic polyphosphate 53.8 28 0.00096 20.2 4.4 29 1-29 4-37 (307)
211 1f4p_A Flavodoxin; electron tr 53.7 20 0.00067 17.8 3.5 20 9-28 13-32 (147)
212 2qv7_A Diacylglycerol kinase D 53.5 22 0.00075 20.6 3.9 32 1-32 24-62 (337)
213 3bqx_A Glyoxalase-related enzy 53.4 19 0.00066 17.7 3.5 24 5-28 73-97 (150)
214 3k17_A LIN0012 protein; protei 53.2 21 0.00073 21.2 3.9 25 3-27 321-345 (365)
215 1t3k_A Arath CDC25, dual-speci 53.1 21 0.0007 18.5 3.4 30 3-32 87-125 (152)
216 3b6e_A Interferon-induced heli 52.6 15 0.00053 18.8 2.8 23 2-24 83-106 (216)
217 3ly5_A ATP-dependent RNA helic 52.5 17 0.00057 20.1 3.1 24 3-26 128-151 (262)
218 1wpn_A Manganese-dependent ino 52.5 24 0.00081 18.7 3.7 31 1-31 1-37 (188)
219 1g3q_A MIND ATPase, cell divis 52.2 25 0.00084 18.5 4.2 29 1-29 1-35 (237)
220 2jkg_A Profilin; proline-rich 52.1 13 0.00045 21.4 2.7 17 10-26 155-171 (179)
221 3h7a_A Short chain dehydrogena 52.1 27 0.00093 19.0 4.1 28 3-30 33-60 (252)
222 1rif_A DAR protein, DNA helica 52.1 19 0.00066 19.8 3.4 24 3-26 159-182 (282)
223 3fe2_A Probable ATP-dependent 51.7 17 0.00059 19.5 3.1 22 3-24 104-125 (242)
224 1ksk_A Ribosomal small subunit 51.4 15 0.0005 20.4 2.8 27 3-31 110-136 (234)
225 3egc_A Putative ribose operon 51.4 23 0.00078 19.0 3.5 28 5-32 104-131 (291)
226 1tsj_A Conserved hypothetical 51.0 24 0.00083 18.1 3.6 25 4-29 76-100 (139)
227 3jy6_A Transcriptional regulat 50.8 17 0.00057 19.5 2.9 28 5-32 102-129 (276)
228 3hly_A Flavodoxin-like domain; 50.2 17 0.00057 18.9 2.8 19 9-27 13-31 (161)
229 4gym_A Glyoxalase/bleomycin re 50.0 21 0.00071 17.5 3.0 22 7-28 84-105 (149)
230 3lap_A Arginine repressor; arg 49.9 17 0.00059 20.3 2.9 23 2-24 147-169 (170)
231 2rk0_A Glyoxalase/bleomycin re 49.6 17 0.00057 17.4 2.6 21 8-28 80-100 (136)
232 3tb6_A Arabinose metabolism tr 49.4 19 0.00066 19.2 3.0 28 5-32 116-143 (298)
233 1qb0_A Protein (M-phase induce 49.1 31 0.0011 18.8 3.9 28 5-32 115-153 (211)
234 3fni_A Putative diflavin flavo 49.0 12 0.0004 19.7 2.0 20 8-27 16-35 (159)
235 2wfd_A Leucyl-tRNA synthetase, 49.0 15 0.00052 21.2 2.7 21 11-31 231-251 (252)
236 3q9l_A Septum site-determining 48.9 27 0.00094 18.6 3.6 28 1-28 1-34 (260)
237 3g85_A Transcriptional regulat 48.9 20 0.00067 19.2 3.0 28 5-32 106-133 (289)
238 3r1i_A Short-chain type dehydr 48.8 33 0.0011 19.1 4.0 28 3-30 58-85 (276)
239 8tfv_A Protein (thanatin); bac 48.7 5.1 0.00017 16.0 0.4 9 4-12 7-15 (21)
240 3ber_A Probable ATP-dependent 48.4 20 0.00068 19.6 3.0 23 3-25 113-135 (249)
241 1byi_A Dethiobiotin synthase; 48.4 29 0.00098 18.2 4.1 28 3-30 2-35 (224)
242 2bon_A Lipid kinase; DAG kinas 48.1 35 0.0012 19.8 4.2 31 2-32 30-64 (332)
243 3k9c_A Transcriptional regulat 48.0 27 0.00094 18.9 3.5 28 5-32 105-132 (289)
244 3ucx_A Short chain dehydrogena 47.9 33 0.0011 18.7 4.5 28 3-30 37-64 (264)
245 2h0a_A TTHA0807, transcription 47.9 23 0.00079 18.7 3.1 27 6-32 94-120 (276)
246 1osc_A Similar to divalent cat 47.8 27 0.00093 18.7 3.4 23 4-26 24-48 (126)
247 3nul_A Profilin I; cytoskeleto 47.3 13 0.00045 19.5 2.1 16 11-26 115-130 (130)
248 1wf6_A Similar to S.pombe -RAD 47.2 26 0.00088 18.0 3.2 27 3-29 43-71 (132)
249 1pyo_A Caspase-2; apoptosis, c 46.9 27 0.00092 19.1 3.4 27 3-29 35-75 (167)
250 3d9y_A Profilin; yeast, actin- 46.7 12 0.00042 19.5 1.9 16 11-26 112-127 (127)
251 3qiv_A Short-chain dehydrogena 46.6 33 0.0011 18.3 4.4 28 3-30 35-62 (253)
252 1dbq_A Purine repressor; trans 46.6 30 0.001 18.4 3.5 28 5-32 105-132 (289)
253 3tum_A Shikimate dehydrogenase 46.6 34 0.0012 19.8 3.9 26 2-27 150-175 (269)
254 1ykg_A SIR-FP, sulfite reducta 46.6 10 0.00034 19.8 1.5 19 9-27 22-40 (167)
255 2ebw_A DNA repair protein REV1 46.6 21 0.00073 16.9 2.7 27 4-30 16-44 (97)
256 2ybo_A Methyltransferase; SUMT 46.1 33 0.0011 19.8 3.8 26 2-27 186-211 (294)
257 2an1_A Putative kinase; struct 45.7 39 0.0013 19.1 4.0 29 1-29 5-38 (292)
258 1xqa_A Glyoxalase/bleomycin re 45.6 23 0.00078 16.2 2.9 20 8-27 68-87 (113)
259 1acf_A Profilin I; protein bin 45.6 14 0.00047 19.2 2.0 15 11-25 110-124 (125)
260 1jr2_A Uroporphyrinogen-III sy 45.6 11 0.00037 21.3 1.7 26 4-29 23-52 (286)
261 1wh6_A CUT-like 2, homeobox pr 45.1 12 0.00039 19.7 1.6 22 6-27 15-36 (101)
262 3r4q_A Lactoylglutathione lyas 44.8 28 0.00094 17.5 3.0 21 8-28 84-104 (160)
263 3ui4_A Peptidyl-prolyl CIS-tra 44.7 29 0.00098 17.2 3.1 20 4-23 11-30 (101)
264 2iks_A DNA-binding transcripti 44.3 24 0.00083 19.0 2.9 27 6-32 118-144 (293)
265 3imf_A Short chain dehydrogena 43.8 37 0.0013 18.4 3.7 28 3-30 32-59 (257)
266 4e16_A Precorrin-4 C(11)-methy 43.8 26 0.00091 19.7 3.1 25 2-26 161-185 (253)
267 1vhf_A Periplasmic divalent ca 43.7 35 0.0012 17.9 3.4 20 6-25 8-27 (113)
268 1o5j_A Periplasmic divalent ca 43.7 35 0.0012 18.0 3.4 21 5-25 17-37 (113)
269 3v4g_A Arginine repressor; vib 43.4 25 0.00085 20.0 3.0 23 2-24 153-175 (180)
270 1s4d_A Uroporphyrin-III C-meth 43.3 30 0.001 19.8 3.3 25 2-26 177-201 (280)
271 1uku_A CUTA1, periplasmic diva 43.3 34 0.0012 17.6 3.4 22 4-25 4-25 (102)
272 3hcw_A Maltose operon transcri 43.3 28 0.00097 18.9 3.1 27 6-32 111-137 (295)
273 1z0s_A Probable inorganic poly 43.1 31 0.001 20.5 3.4 25 4-28 32-56 (278)
274 1vio_A Ribosomal small subunit 43.0 23 0.0008 19.8 2.8 27 3-31 109-135 (243)
275 2nuh_A Periplasmic divalent ca 43.0 36 0.0012 18.0 3.4 21 5-25 9-29 (118)
276 3brq_A HTH-type transcriptiona 42.9 27 0.00092 18.6 2.9 26 7-32 120-145 (296)
277 1p1l_A CUTA, periplasmic dival 42.8 35 0.0012 17.5 3.4 21 5-25 6-26 (102)
278 1ypr_A Profilin; actin-binding 42.8 17 0.00059 18.9 2.1 15 11-25 110-124 (125)
279 1hyq_A MIND, cell division inh 42.7 38 0.0013 18.2 3.6 29 1-29 1-35 (263)
280 1ctf_A Ribosomal protein L7/L1 42.7 17 0.00059 18.3 2.0 20 9-28 52-71 (74)
281 2pbd_P Profilin-1, profilin I; 42.6 17 0.00058 19.3 2.1 15 11-25 124-138 (139)
282 1rcu_A Conserved hypothetical 42.6 45 0.0015 18.7 4.4 29 2-30 24-63 (195)
283 1zcz_A Bifunctional purine bio 42.4 33 0.0011 22.4 3.7 29 1-29 13-41 (464)
284 3ahp_A CUTA1; thermostable pro 42.4 36 0.0012 17.7 3.4 21 5-25 10-30 (108)
285 3gaf_A 7-alpha-hydroxysteroid 42.3 41 0.0014 18.3 4.5 28 3-30 38-65 (256)
286 3qk7_A Transcriptional regulat 42.3 30 0.001 18.8 3.1 28 5-32 105-132 (294)
287 1x2l_A CUT-like 2, homeobox pr 42.1 7 0.00024 20.5 0.5 23 6-28 15-37 (101)
288 4hac_A Mevalonate kinase; GHMP 42.0 33 0.0011 19.8 3.4 24 3-27 284-307 (321)
289 3hul_A HSK, HK, homoserine kin 42.0 45 0.0015 19.2 3.9 23 4-27 251-273 (298)
290 1nza_A CUTA, divalent cation t 42.0 36 0.0012 17.5 3.4 21 5-25 6-26 (103)
291 2gml_A Ribosomal large subunit 41.7 28 0.00094 20.2 3.0 27 3-31 59-85 (237)
292 4g81_D Putative hexonate dehyd 41.7 40 0.0014 19.2 3.7 28 3-30 35-62 (255)
293 1w36_B RECB, exodeoxyribonucle 41.6 35 0.0012 23.3 3.8 29 2-30 552-580 (1180)
294 1naq_A Periplasmic divalent ca 41.1 39 0.0013 17.6 3.4 21 5-25 15-35 (112)
295 3hgt_A HDA1 complex subunit 3; 41.0 32 0.0011 21.0 3.3 25 2-26 126-150 (328)
296 3d8u_A PURR transcriptional re 41.0 23 0.0008 18.7 2.5 26 6-31 100-125 (275)
297 2v8f_A Profilin-2, profilin II 40.8 19 0.00064 19.3 2.1 15 11-25 125-139 (140)
298 1kr4_A Protein TM1056, CUTA; s 40.7 41 0.0014 18.1 3.4 21 5-25 27-47 (125)
299 2zom_A CUTA1, protein CUTA, ch 40.5 40 0.0014 17.6 3.4 20 6-25 15-34 (113)
300 3dbi_A Sugar-binding transcrip 40.2 32 0.0011 19.1 3.0 27 6-32 161-187 (338)
301 2w9r_A YLJA, ATP-dependent CLP 40.1 12 0.00041 19.6 1.2 23 2-24 69-91 (108)
302 3tfo_A Putative 3-oxoacyl-(acy 40.1 48 0.0016 18.4 4.4 28 3-30 30-57 (264)
303 3v8b_A Putative dehydrogenase, 39.8 49 0.0017 18.4 4.1 28 3-30 54-81 (283)
304 3huh_A Virulence protein STM31 39.6 22 0.00075 17.3 2.1 23 5-28 89-111 (152)
305 3keo_A Redox-sensing transcrip 39.6 52 0.0018 18.7 4.1 29 5-33 152-180 (212)
306 4fe7_A Xylose operon regulator 39.3 47 0.0016 19.2 3.8 28 5-32 118-145 (412)
307 3k4h_A Putative transcriptiona 39.1 32 0.0011 18.4 2.8 27 6-32 111-137 (292)
308 3miz_A Putative transcriptiona 39.1 32 0.0011 18.6 2.9 28 5-32 110-137 (301)
309 1u7i_A Hypothetical protein; s 39.0 36 0.0012 16.7 3.7 23 6-29 84-106 (136)
310 2hsg_A Glucose-resistance amyl 39.0 33 0.0011 18.9 3.0 27 6-32 157-183 (332)
311 2rqs_A Parvulin-like peptidyl- 39.0 27 0.00091 16.9 2.3 19 5-23 14-32 (97)
312 3cs3_A Sugar-binding transcrip 38.9 37 0.0013 18.1 3.1 27 5-31 97-123 (277)
313 3l20_A Putative uncharacterize 38.7 33 0.0011 18.7 2.9 22 4-25 106-132 (172)
314 3kke_A LACI family transcripti 38.7 35 0.0012 18.6 3.0 27 6-32 111-137 (303)
315 3clk_A Transcription regulator 38.5 38 0.0013 18.2 3.1 27 6-32 105-131 (290)
316 2qu7_A Putative transcriptiona 38.4 35 0.0012 18.3 2.9 27 6-32 102-128 (288)
317 3o8q_A Shikimate 5-dehydrogena 38.3 45 0.0015 19.3 3.6 24 2-25 151-174 (281)
318 3eq5_A SKI-like protein; TGF-b 38.2 16 0.00054 20.1 1.5 13 10-22 109-121 (125)
319 3huu_A Transcription regulator 38.2 31 0.0011 18.8 2.7 27 6-32 124-150 (305)
320 3nec_A Profilin, inflammatory 38.2 21 0.00073 19.8 2.1 14 12-25 152-165 (166)
321 2fcl_A Hypothetical protein TM 38.1 22 0.00075 19.4 2.1 17 9-25 153-169 (169)
322 2rbb_A Glyoxalase/bleomycin re 37.9 36 0.0012 16.3 3.2 21 8-28 83-103 (141)
323 1sbx_A SKI oncogene, C-SKI; wi 37.7 17 0.00057 19.4 1.5 14 10-23 92-105 (106)
324 3bbl_A Regulatory protein of L 37.5 35 0.0012 18.3 2.9 26 6-31 105-130 (287)
325 2o20_A Catabolite control prot 37.5 42 0.0014 18.6 3.2 27 6-32 160-186 (332)
326 3gsd_A Divalent-cation toleran 37.5 48 0.0016 17.7 3.4 22 4-25 22-45 (122)
327 1zk6_A Foldase protein PRSA; a 37.4 36 0.0012 16.2 2.8 19 5-23 9-27 (93)
328 2gk6_A Regulator of nonsense t 37.4 40 0.0014 21.3 3.4 25 2-26 225-249 (624)
329 3rkr_A Short chain oxidoreduct 37.3 51 0.0017 17.9 4.4 28 3-30 55-82 (262)
330 4ibo_A Gluconate dehydrogenase 37.3 54 0.0018 18.1 3.7 28 3-30 52-79 (271)
331 2d5v_A Hepatocyte nuclear fact 37.1 14 0.0005 19.6 1.2 23 6-28 2-24 (164)
332 3zw5_A Glyoxalase domain-conta 37.1 29 0.00098 17.0 2.3 23 5-28 93-115 (147)
333 3a9f_A Cytochrome C; alpha hel 37.0 22 0.00075 17.9 1.9 15 10-24 77-91 (92)
334 3r2u_A Metallo-beta-lactamase 37.0 7.2 0.00025 23.8 0.0 29 3-31 427-455 (466)
335 3pk0_A Short-chain dehydrogena 36.9 52 0.0018 17.9 4.3 24 3-26 36-59 (262)
336 3upu_A ATP-dependent DNA helic 36.8 31 0.0011 20.7 2.8 22 3-24 254-275 (459)
337 3h5o_A Transcriptional regulat 36.5 34 0.0011 19.0 2.7 27 6-32 158-184 (339)
338 3bil_A Probable LACI-family tr 36.3 55 0.0019 18.4 3.7 27 6-32 164-190 (348)
339 1fsh_A Dishevelled-1; three-he 36.3 28 0.00096 17.7 2.2 19 8-26 67-85 (105)
340 3ipz_A Monothiol glutaredoxin- 36.3 40 0.0014 16.4 4.1 29 2-30 18-52 (109)
341 3o26_A Salutaridine reductase; 36.2 53 0.0018 17.7 4.3 25 3-27 38-62 (311)
342 3sju_A Keto reductase; short-c 35.9 57 0.0019 18.0 4.4 28 3-30 50-77 (279)
343 4e98_A CUTA1 divalent ION tole 35.8 53 0.0018 18.0 3.4 22 4-25 37-60 (138)
344 4b3f_X DNA-binding protein smu 35.8 56 0.0019 20.6 3.9 26 2-27 234-259 (646)
345 3afo_A NADH kinase POS5; alpha 35.7 68 0.0023 19.8 4.2 27 1-27 41-72 (388)
346 2fep_A Catabolite control prot 35.7 36 0.0012 18.4 2.7 27 6-32 113-139 (289)
347 3b6i_A Flavoprotein WRBA; flav 35.7 47 0.0016 17.0 3.6 20 9-28 14-34 (198)
348 2a33_A Hypothetical protein; s 35.5 62 0.0021 18.3 4.2 29 2-30 14-50 (215)
349 1qpz_A PURA, protein (purine n 35.5 44 0.0015 18.5 3.1 28 5-32 156-183 (340)
350 1bvy_F Protein (cytochrome P45 35.4 19 0.00066 19.6 1.6 20 8-27 33-52 (191)
351 4g65_A TRK system potassium up 35.2 37 0.0013 20.9 3.0 21 2-22 435-455 (461)
352 3lfu_A DNA helicase II; SF1 he 35.1 58 0.002 19.9 3.8 27 2-28 348-374 (647)
353 3awd_A GOX2181, putative polyo 34.8 53 0.0018 17.4 4.5 28 3-30 39-66 (260)
354 3ctp_A Periplasmic binding pro 34.6 43 0.0015 18.5 3.0 27 6-32 152-178 (330)
355 1vfj_A Nitrogen regulatory pro 34.4 47 0.0016 16.6 3.8 26 1-27 1-26 (116)
356 3jvd_A Transcriptional regulat 34.1 32 0.0011 19.3 2.4 28 5-32 153-180 (333)
357 1pjr_A PCRA; DNA repair, DNA r 34.0 69 0.0024 20.6 4.2 26 3-28 353-378 (724)
358 3jyo_A Quinate/shikimate dehyd 34.0 50 0.0017 19.1 3.3 24 2-25 152-175 (283)
359 2jah_A Clavulanic acid dehydro 34.0 58 0.002 17.5 4.5 27 3-29 33-59 (247)
360 1yb1_A 17-beta-hydroxysteroid 33.9 60 0.002 17.7 4.5 28 3-30 57-84 (272)
361 1va0_A Uroporphyrin-III C-meth 33.8 38 0.0013 18.6 2.7 24 3-26 153-176 (239)
362 3ct8_A Protein BH2160, putativ 33.8 45 0.0015 16.4 2.8 21 8-28 94-114 (146)
363 3h5t_A Transcriptional regulat 33.6 34 0.0012 19.2 2.5 27 6-32 169-195 (366)
364 3kjx_A Transcriptional regulat 33.5 34 0.0012 19.1 2.4 28 5-32 164-191 (344)
365 2xzl_A ATP-dependent helicase 33.5 50 0.0017 21.9 3.5 25 2-26 405-429 (802)
366 4a15_A XPD helicase, ATP-depen 33.1 53 0.0018 20.9 3.5 23 2-24 52-74 (620)
367 1wma_A Carbonyl reductase [NAD 33.0 57 0.0019 17.2 4.3 27 3-29 31-57 (276)
368 4imr_A 3-oxoacyl-(acyl-carrier 32.9 65 0.0022 17.8 3.7 28 3-30 59-86 (275)
369 3c3k_A Alanine racemase; struc 32.7 45 0.0016 17.9 2.8 26 6-31 104-129 (285)
370 3crv_A XPD/RAD3 related DNA he 32.7 57 0.002 20.1 3.5 24 2-25 48-71 (551)
371 3ftp_A 3-oxoacyl-[acyl-carrier 32.7 65 0.0022 17.8 4.1 27 3-29 54-80 (270)
372 1ji5_A DLP-1; dodecamer, four- 32.7 35 0.0012 17.0 2.2 18 11-28 47-64 (142)
373 2iz6_A Molybdenum cofactor car 32.5 65 0.0022 17.7 4.3 28 3-30 15-50 (176)
374 3e61_A Putative transcriptiona 32.3 34 0.0012 18.1 2.2 26 6-31 102-127 (277)
375 3ksm_A ABC-type sugar transpor 32.3 58 0.002 17.0 3.3 29 4-32 101-133 (276)
376 2qbu_A Precorrin-2 methyltrans 32.3 44 0.0015 18.0 2.7 24 3-26 170-193 (232)
377 3tox_A Short chain dehydrogena 32.1 58 0.002 18.1 3.3 28 3-30 34-61 (280)
378 3pop_A GILR oxidase; FAD bindi 32.1 62 0.0021 20.3 3.7 27 3-29 36-62 (501)
379 2kjz_A ATC0852; protein of unk 32.0 50 0.0017 16.2 2.9 21 8-28 94-114 (144)
380 3tsh_A Pollen allergen PHL P 4 31.9 53 0.0018 20.2 3.3 27 3-29 54-80 (500)
381 2ph1_A Nucleotide-binding prot 31.5 61 0.0021 17.6 3.3 27 2-28 18-50 (262)
382 3e3m_A Transcriptional regulat 31.5 45 0.0015 18.7 2.7 27 6-32 167-193 (355)
383 1v3f_A Pleckstrin 2; three-hel 31.3 33 0.0011 17.9 2.1 19 8-26 53-71 (120)
384 3pwz_A Shikimate dehydrogenase 31.2 51 0.0017 19.0 3.0 22 2-23 145-166 (272)
385 3dh3_A Ribosomal large subunit 31.2 51 0.0017 19.4 3.0 27 3-31 112-138 (290)
386 3gbv_A Putative LACI-family tr 31.0 49 0.0017 17.6 2.8 27 5-31 112-140 (304)
387 3g1w_A Sugar ABC transporter; 30.9 49 0.0017 17.8 2.8 27 6-32 105-133 (305)
388 2xhe_A UNC18; exocytosis, exoc 30.9 77 0.0026 20.3 4.0 22 3-24 69-91 (650)
389 3tnl_A Shikimate dehydrogenase 30.9 68 0.0023 19.0 3.6 24 2-25 179-205 (315)
390 1kkh_A Mevalonate kinase; mixe 30.8 58 0.002 18.2 3.1 24 3-27 286-309 (317)
391 2ipi_A Aclacinomycin oxidoredu 30.8 61 0.0021 20.2 3.5 27 3-29 57-83 (521)
392 3rhe_A NAD-dependent benzaldeh 30.8 55 0.0019 16.3 3.2 21 8-28 75-95 (148)
393 3o38_A Short chain dehydrogena 30.7 67 0.0023 17.3 4.3 26 3-28 49-74 (266)
394 3dnj_A ATP-dependent CLP prote 30.6 56 0.0019 16.4 3.7 20 2-21 48-67 (85)
395 2p5k_A Arginine repressor; DNA 30.6 39 0.0013 14.5 2.0 16 12-27 20-35 (64)
396 2xj4_A MIPZ; replication, cell 30.5 42 0.0014 18.7 2.5 28 1-28 3-36 (286)
397 1jns_A Peptidyl-prolyl CIS-tra 30.5 50 0.0017 15.7 2.8 19 5-23 8-26 (92)
398 2qq5_A DHRS1, dehydrogenase/re 30.5 68 0.0023 17.3 4.2 27 3-29 31-57 (260)
399 1h72_C HK, homoserine kinase; 30.5 69 0.0024 17.7 3.4 24 3-27 260-283 (296)
400 2p4g_A Hypothetical protein; p 30.4 54 0.0019 18.6 3.0 17 13-29 175-191 (270)
401 3rja_A Carbohydrate oxidase; p 30.3 70 0.0024 19.7 3.7 26 3-28 38-63 (473)
402 2rgy_A Transcriptional regulat 30.3 41 0.0014 18.1 2.4 25 7-31 109-133 (290)
403 1jye_A Lactose operon represso 29.9 51 0.0017 18.5 2.8 26 6-31 159-184 (349)
404 2zfh_A CUTA; human brain, trim 29.9 71 0.0024 18.4 3.4 22 4-25 69-92 (179)
405 1w5c_T Cytochrome C-550; photo 29.8 40 0.0014 17.4 2.2 22 10-31 134-163 (163)
406 4dik_A Flavoprotein; TM0755, e 29.8 26 0.0009 21.3 1.7 21 8-28 277-297 (410)
407 1epu_A S-SEC1; parallel beta-s 29.7 61 0.0021 20.3 3.3 29 3-31 69-100 (591)
408 2vsw_A Dual specificity protei 29.4 18 0.00062 18.3 0.8 29 3-31 80-116 (153)
409 3tjr_A Short chain dehydrogena 29.4 79 0.0027 17.7 4.5 28 3-30 57-84 (301)
410 1wh8_A CUT-like 2, homeobox pr 29.0 34 0.0012 18.2 1.8 22 6-27 25-46 (111)
411 2khp_A Glutaredoxin; thioredox 29.0 47 0.0016 15.0 4.4 29 2-30 6-35 (92)
412 1vi6_A 30S ribosomal protein S 29.0 37 0.0013 19.6 2.1 19 4-22 70-88 (208)
413 1jig_A DLP-2; dodecamer, four- 29.0 43 0.0015 16.8 2.2 18 11-28 51-68 (146)
414 3mb5_A SAM-dependent methyltra 28.9 70 0.0024 17.0 3.2 23 3-25 189-211 (255)
415 1uek_A 4-(cytidine 5'-diphosph 28.0 74 0.0025 17.6 3.2 23 3-25 236-258 (275)
416 1mpy_A Catechol 2,3-dioxygenas 28.0 55 0.0019 17.9 2.7 21 8-28 72-92 (307)
417 1cbf_A Cobalt-precorrin-4 tran 28.0 72 0.0025 18.1 3.2 24 3-26 178-201 (285)
418 3ol3_A Putative uncharacterize 27.9 49 0.0017 17.5 2.4 20 9-28 83-102 (107)
419 2zjq_5 50S ribosomal protein L 27.9 42 0.0014 18.2 2.1 19 10-28 101-119 (122)
420 1n1q_A DPS protein; four-helix 27.8 46 0.0016 16.8 2.2 18 11-28 54-71 (149)
421 3dhn_A NAD-dependent epimerase 27.7 69 0.0024 16.5 3.7 27 2-28 5-31 (227)
422 2wdx_A Putative hexose oxidase 27.7 74 0.0025 19.9 3.5 27 3-29 59-85 (523)
423 2y3s_A TAML; oxidoreductase; H 27.7 81 0.0028 19.8 3.7 27 3-29 60-86 (530)
424 2j01_L 50S ribosomal protein L 27.6 43 0.0015 18.2 2.1 19 10-28 104-122 (125)
425 1npy_A Hypothetical shikimate 27.6 64 0.0022 18.5 3.0 21 2-22 144-164 (271)
426 1pjq_A CYSG, siroheme synthase 27.5 60 0.002 19.9 3.0 26 2-27 375-400 (457)
427 3kol_A Oxidoreductase, glyoxal 27.5 57 0.0019 15.4 3.8 24 5-28 100-123 (156)
428 3oms_A PHNB protein; structura 27.4 70 0.0024 16.4 3.8 24 4-28 85-108 (138)
429 3t4e_A Quinate/shikimate dehyd 27.3 83 0.0028 18.6 3.5 24 2-25 173-199 (312)
430 3oon_A Outer membrane protein 27.3 38 0.0013 16.8 1.8 17 11-27 71-87 (123)
431 4fs3_A Enoyl-[acyl-carrier-pro 27.2 83 0.0028 17.2 4.2 27 3-29 34-60 (256)
432 3r2k_A Bacterioferritin, BFR; 27.2 50 0.0017 16.6 2.3 17 11-27 52-68 (154)
433 3bbn_B Ribosomal protein S2; s 27.1 38 0.0013 19.7 2.0 20 3-22 65-84 (231)
434 2jd6_0 Ferritin homolog, ferri 27.0 49 0.0017 17.2 2.3 17 11-27 51-67 (174)
435 1fmc_A 7 alpha-hydroxysteroid 26.9 76 0.0026 16.7 4.5 27 3-29 37-63 (255)
436 3lyl_A 3-oxoacyl-(acyl-carrier 26.9 77 0.0026 16.8 4.5 27 3-29 31-57 (247)
437 1p77_A Shikimate 5-dehydrogena 26.8 89 0.003 17.5 3.5 22 3-24 144-165 (272)
438 1dd3_A 50S ribosomal protein L 26.8 46 0.0016 18.2 2.2 20 9-28 106-125 (128)
439 3l49_A ABC sugar (ribose) tran 26.8 78 0.0027 16.8 3.7 27 6-32 103-131 (291)
440 1geg_A Acetoin reductase; SDR 26.6 81 0.0028 16.9 4.5 27 3-29 28-54 (256)
441 2o4a_A DNA-binding protein SAT 26.5 26 0.00089 18.1 1.1 21 8-28 7-27 (93)
442 2hqs_H Peptidoglycan-associate 26.5 40 0.0014 16.9 1.8 17 11-27 60-76 (118)
443 3ph0_C ASCG; type III secretio 26.5 49 0.0017 16.2 2.0 16 11-26 22-37 (61)
444 3r1m_A Putative uncharacterize 26.4 20 0.00069 23.0 0.7 20 7-26 316-335 (385)
445 2ae2_A Protein (tropinone redu 26.4 83 0.0028 16.9 4.4 27 3-29 35-61 (260)
446 1zem_A Xylitol dehydrogenase; 26.3 84 0.0029 17.0 4.3 27 3-29 33-59 (262)
447 2xzm_B RPS0E; ribosome, transl 26.2 62 0.0021 19.0 2.8 19 4-22 68-86 (241)
448 2c41_A DPS family DNA-binding 26.2 51 0.0017 17.0 2.2 18 11-28 56-73 (158)
449 2a2k_A M-phase inducer phospha 26.0 75 0.0026 16.4 3.9 18 7-24 97-115 (175)
450 2m0n_A Putative uncharacterize 25.9 50 0.0017 17.7 2.2 20 9-28 83-102 (112)
451 2d5k_A DPS, DPS family protein 25.9 52 0.0018 17.0 2.2 17 11-27 53-69 (156)
452 3f1l_A Uncharacterized oxidore 25.9 85 0.0029 16.9 3.3 24 3-26 38-61 (252)
453 1ujc_A Phosphohistidine phosph 25.8 58 0.002 16.7 2.4 18 11-28 28-45 (161)
454 3bch_A 40S ribosomal protein S 25.5 57 0.002 19.4 2.6 19 4-22 106-124 (253)
455 1f1u_A Homoprotocatechuate 2,3 25.4 78 0.0027 17.7 3.0 21 8-28 81-101 (323)
456 3c9p_A Uncharacterized protein 25.1 43 0.0015 18.4 1.9 15 9-23 29-43 (123)
457 3rri_A Glyoxalase/bleomycin re 25.1 63 0.0022 15.1 4.1 21 8-28 75-95 (135)
458 3ic4_A Glutaredoxin (GRX-1); s 25.1 58 0.002 14.7 3.6 29 2-30 12-41 (92)
459 4amg_A Snogd; transferase, pol 25.0 55 0.0019 18.3 2.3 18 14-31 39-56 (400)
460 2fkz_A Bacterioferritin; ferro 24.9 58 0.002 16.1 2.2 17 11-27 52-68 (155)
461 3uoi_A Bacterioferritin, BFR; 24.9 57 0.0019 16.5 2.2 17 11-27 54-70 (161)
462 2pwy_A TRNA (adenine-N(1)-)-me 24.9 84 0.0029 16.5 3.0 25 3-27 193-217 (258)
463 2ohh_A Type A flavoprotein FPR 24.6 53 0.0018 18.8 2.3 20 9-28 269-288 (404)
464 3rih_A Short chain dehydrogena 24.5 1E+02 0.0035 17.3 3.6 24 3-26 67-90 (293)
465 3hjn_A DTMP kinase, thymidylat 24.3 71 0.0024 17.1 2.7 18 12-29 15-32 (197)
466 2vzb_A Putative bacterioferrit 24.3 59 0.002 16.4 2.2 17 11-27 63-79 (170)
467 2zat_A Dehydrogenase/reductase 24.2 91 0.0031 16.7 4.5 27 3-29 40-66 (260)
468 1uaa_A REP helicase, protein ( 24.2 62 0.0021 20.3 2.7 27 2-28 343-369 (673)
469 2wjy_A Regulator of nonsense t 24.2 87 0.003 20.8 3.4 26 2-27 401-426 (800)
470 3i1j_A Oxidoreductase, short c 24.2 88 0.003 16.5 4.2 24 3-26 40-63 (247)
471 2haw_A Manganese-dependent ino 24.1 52 0.0018 18.9 2.2 28 1-28 1-34 (309)
472 2bvf_A 6-hydroxy-D-nicotine ox 24.1 98 0.0034 18.8 3.5 26 3-28 40-65 (459)
473 3oj5_A Ferritin family protein 24.0 59 0.002 17.3 2.3 17 11-27 56-72 (189)
474 2c07_A 3-oxoacyl-(acyl-carrier 24.0 98 0.0033 16.9 4.4 28 3-30 70-97 (285)
475 2zki_A 199AA long hypothetical 23.8 57 0.0019 16.8 2.1 20 9-28 16-35 (199)
476 1ydg_A Trp repressor binding p 23.8 64 0.0022 16.9 2.4 21 8-28 18-38 (211)
477 2eap_A Lymphocyte cytosolic pr 23.7 19 0.00064 18.9 0.2 13 14-26 24-36 (90)
478 3e5d_A Putative glyoxalase I; 23.7 64 0.0022 14.7 4.0 21 8-28 79-99 (127)
479 2ftc_E L12MT, MRP-L12, 39S rib 23.7 55 0.0019 17.9 2.1 19 10-28 116-134 (137)
480 3t2c_A Fructose-1,6-bisphospha 23.7 23 0.00078 22.9 0.6 20 7-26 326-345 (407)
481 2d8c_A Phosphatidylcholine:cer 23.6 30 0.001 17.5 1.0 15 13-27 21-35 (97)
482 3cxt_A Dehydrogenase with diff 23.6 1E+02 0.0036 17.1 4.3 27 3-29 60-86 (291)
483 3zzm_A Bifunctional purine bio 23.5 1.2E+02 0.0042 20.0 4.0 28 1-28 10-37 (523)
484 2x3g_A SIRV1 hypothetical prot 23.5 35 0.0012 18.5 1.3 20 3-22 66-85 (119)
485 2fsv_C NAD(P) transhydrogenase 23.5 74 0.0025 18.7 2.7 21 10-30 62-82 (203)
486 2ns1_B Nitrogen regulatory pro 23.4 81 0.0028 15.8 3.1 25 2-27 6-30 (116)
487 2ysr_A DEP domain-containing p 23.4 56 0.0019 16.6 2.0 19 8-26 63-81 (105)
488 3kj0_B BCL-2-like protein 11; 23.4 5.6 0.00019 16.8 -1.6 14 16-29 9-22 (27)
489 1pno_A NAD(P) transhydrogenase 23.4 76 0.0026 18.4 2.7 21 10-30 39-59 (180)
490 2wh6_B BCL-2-like protein 11; 23.3 8.2 0.00028 16.1 -1.0 14 16-29 7-20 (26)
491 2qqy_A Sigma B operon; dodecam 23.1 66 0.0023 15.7 2.2 17 11-27 56-72 (149)
492 1g5h_A Mitochondrial DNA polym 23.1 1.1E+02 0.0037 19.0 3.6 26 3-28 340-371 (454)
493 1zr6_A Glucooligosaccharide ox 23.1 1E+02 0.0035 19.1 3.5 26 3-28 44-69 (503)
494 2d0s_A Cytochrome C, cytochrom 23.1 55 0.0019 14.5 1.8 15 10-24 64-78 (79)
495 1uhw_A Pleckstrin; three-helix 23.1 48 0.0016 17.3 1.7 18 8-25 53-70 (109)
496 4hc5_A Glyoxalase/bleomycin re 23.0 54 0.0019 15.1 1.8 17 12-28 88-104 (133)
497 3ia7_A CALG4; glycosysltransfe 22.9 77 0.0026 17.6 2.7 18 14-31 21-38 (402)
498 2q9u_A A-type flavoprotein; fl 22.9 63 0.0021 18.7 2.4 20 9-28 269-288 (414)
499 3fw9_A Reticuline oxidase; BI- 22.9 87 0.003 19.6 3.1 26 3-28 47-72 (495)
500 2qqz_A Glyoxalase family prote 22.8 67 0.0023 14.9 2.1 16 13-28 82-97 (126)
No 1
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=97.95 E-value=1.4e-05 Score=42.86 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=26.5
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
+++||||+|+..|+.+++.|.+.|....++
T Consensus 35 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~ 64 (175)
T 2rb4_A 35 GQAIIFCQTRRNAKWLTVEMIQDGHQVSLL 64 (175)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 589999999999999999999998766554
No 2
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=97.92 E-value=1.6e-05 Score=42.29 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=26.3
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
+++||||+|+..|+.+++.|.+.|.....+
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~ 65 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDLGYPCDKI 65 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 579999999999999999999998765544
No 3
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=97.91 E-value=1.7e-05 Score=42.85 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=26.5
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
+++||||+|+..|+.|++.|.+.|.....+
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~ 61 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQNFPAIAI 61 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEECCHHHHHHHHHHHHhcCCCEEEE
Confidence 579999999999999999999998776544
No 4
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=97.88 E-value=2.5e-05 Score=41.51 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=26.2
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
+++||||+|+..|+.+++.|++.|.....+
T Consensus 31 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~ 60 (165)
T 1fuk_A 31 TQAVIFCNTRRKVEELTTKLRNDKFTVSAI 60 (165)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEE
Confidence 579999999999999999999988765543
No 5
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=97.78 E-value=3.9e-05 Score=41.96 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=26.1
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
.++||||+|+..|+.|++.|++.|.....+
T Consensus 47 ~k~lVF~~~~~~~~~l~~~L~~~g~~~~~l 76 (185)
T 2jgn_A 47 SLTLVFVETKKGADSLEDFLYHEGYACTSI 76 (185)
T ss_dssp SCEEEEESCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCceEEE
Confidence 479999999999999999999988765543
No 6
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=97.73 E-value=4.3e-05 Score=42.46 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=26.4
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
+++||||+|+..++.|++.|.+.|.....+
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~l 61 (212)
T 3eaq_A 32 DRAMVFTRTKAETEEIAQGLLRLGHPAQAL 61 (212)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHTCCEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 589999999999999999999998766544
No 7
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=97.70 E-value=4.7e-05 Score=42.01 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=26.0
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
.++||||+|+..++.|++.|++.|.....+
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~g~~~~~l 84 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 479999999999999999999988765543
No 8
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=97.56 E-value=8.5e-05 Score=43.47 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=25.4
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
.++||||||+..|+.+++.|++.|....
T Consensus 253 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~ 280 (414)
T 3oiy_A 253 DGILIFAQTEEEGKELYEYLKRFKFNVG 280 (414)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCcee
Confidence 5799999999999999999999987664
No 9
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=97.51 E-value=0.00014 Score=41.87 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=26.3
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
.++||||+|+..|+.+++.|++.|.....+
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~ 306 (417)
T 2i4i_A 277 SLTLVFVETKKGADSLEDFLYHEGYACTSI 306 (417)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCCeeEe
Confidence 479999999999999999999998776544
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.49 E-value=0.00015 Score=41.55 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=26.6
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
.++||||+|+..|+.+++.|.+.|....++
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~ 296 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKEGHQVALL 296 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhCCCeEEEe
Confidence 589999999999999999999998776554
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.48 E-value=0.00016 Score=40.99 Aligned_cols=30 Identities=23% Similarity=0.237 Sum_probs=26.5
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
.++||||+++..|+.+++.|++.|....++
T Consensus 244 ~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~ 273 (395)
T 3pey_A 244 GSSIIFVATKKTANVLYGKLKSEGHEVSIL 273 (395)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcCCcEEEe
Confidence 579999999999999999999998776554
No 12
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=97.47 E-value=0.00016 Score=42.89 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=26.2
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
+++||||+|+..++.|++.|.+.|.....+
T Consensus 29 ~~~LVF~~t~~~~~~l~~~L~~~g~~~~~l 58 (300)
T 3i32_A 29 DRAMVFTRTKAETEEIAQGLLRLGHPAQAL 58 (300)
T ss_dssp SSEEEECSSHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 589999999999999999999988765543
No 13
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=96.60 E-value=1.7e-05 Score=42.46 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=25.1
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
.++||||+|+..|+.+++.|++.|....+
T Consensus 31 ~~~iVF~~~~~~~~~l~~~L~~~~~~~~~ 59 (170)
T 2yjt_D 31 TRSIVFVRKRERVHELANWLREAGINNCY 59 (170)
Confidence 47999999999999999999988765543
No 14
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.45 E-value=0.00018 Score=41.64 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=26.2
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
.++||||+|++.++.+++.|.+.|.....+
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~ 306 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREANFTVSSM 306 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTTCCCEEE
T ss_pred CcEEEEEcCHHHHHHHHHHHHhCCCceEEe
Confidence 479999999999999999999998765543
No 15
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.43 E-value=0.00017 Score=44.78 Aligned_cols=30 Identities=17% Similarity=0.391 Sum_probs=26.9
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
.++||||+|+.+|+.+++.|++.|.....|
T Consensus 237 ~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~ 266 (523)
T 1oyw_A 237 KSGIIYCNSRAKVEDTAARLQSKGISAAAY 266 (523)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHHCCCCEEEe
Confidence 479999999999999999999998876655
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.40 E-value=0.00021 Score=45.40 Aligned_cols=30 Identities=17% Similarity=0.389 Sum_probs=27.1
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
+++||||+|+..|++|++.|++.|.....|
T Consensus 268 ~~~IVf~~sr~~~e~la~~L~~~g~~~~~~ 297 (591)
T 2v1x_A 268 QSGIIYCFSQKDSEQVTVSLQNLGIHAGAY 297 (591)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEeCcHHHHHHHHHHHHHCCCCEEEe
Confidence 579999999999999999999999877665
No 17
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.37 E-value=0.00022 Score=46.89 Aligned_cols=30 Identities=37% Similarity=0.736 Sum_probs=26.2
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
.++|||||||++|++|++.|++.|.....+
T Consensus 397 ~~vLVFv~Tr~~ae~la~~L~~~g~~v~~l 426 (666)
T 3o8b_A 397 GRHLIFCHSKKKCDELAAKLSGLGINAVAY 426 (666)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTTTCCEEEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHhCCCcEEEe
Confidence 589999999999999999999988765443
No 18
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=97.37 E-value=0.00029 Score=40.21 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=26.2
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
.++||||+++..|+.+++.|.+.|....++
T Consensus 251 ~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~ 280 (391)
T 1xti_A 251 NQVVIFVKSVQRCIALAQLLVEQNFPAIAI 280 (391)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCcEEEE
Confidence 589999999999999999999998765543
No 19
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.34 E-value=0.00029 Score=40.51 Aligned_cols=30 Identities=20% Similarity=0.475 Sum_probs=26.3
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
.++||||+++..++.+++.|++.|....++
T Consensus 259 ~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~ 288 (400)
T 1s2m_A 259 NQAIIFCNSTNRVELLAKKITDLGYSCYYS 288 (400)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTCCEEEE
T ss_pred CcEEEEEecHHHHHHHHHHHHhcCCCeEEe
Confidence 579999999999999999999988765544
No 20
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.32 E-value=0.00034 Score=39.25 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=25.9
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
.++||||+++..++.+++.|++.|.....+
T Consensus 239 ~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~ 268 (367)
T 1hv8_A 239 FYGLVFCKTKRDTKELASMLRDIGFKAGAI 268 (367)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEECCHHHHHHHHHHHHhcCCCeEEe
Confidence 478999999999999999999988765543
No 21
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.30 E-value=0.00029 Score=42.86 Aligned_cols=29 Identities=7% Similarity=0.102 Sum_probs=25.4
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
.++||||+|++.|+.+++.|++.|.....
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~~~~v~~ 206 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKAGKSVVV 206 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCCEEE
Confidence 58999999999999999999998765543
No 22
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=97.29 E-value=0.00029 Score=45.06 Aligned_cols=30 Identities=13% Similarity=0.287 Sum_probs=26.1
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
.++||||+|+++|+.+++.|++.|.....+
T Consensus 356 ~~~LVF~~s~~~a~~l~~~L~~~g~~v~~l 385 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKSGKRVIQL 385 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHcCCcEEEE
Confidence 579999999999999999999998765543
No 23
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=97.28 E-value=0.00022 Score=40.94 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=26.2
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
.++||||++++.|+.+++.|.+.|....++
T Consensus 281 ~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~ 310 (414)
T 3eiq_A 281 TQAVIFINTRRKVDWLTEKMHARDFTVSAM 310 (414)
T ss_dssp SSCEEECSCHHHHHHHHHHHHTTTCCCEEC
T ss_pred CcEEEEeCCHHHHHHHHHHHHhcCCeEEEe
Confidence 478999999999999999999988765543
No 24
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=97.28 E-value=0.00031 Score=42.09 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=24.8
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
++||||+|+..|+.|++.|.+.|.....
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~~~~~~~ 329 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEKEFPTTS 329 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEEeCcHHHHHHHHHHHhCCCCEEE
Confidence 5899999999999999999999876544
No 25
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.22 E-value=0.00043 Score=42.22 Aligned_cols=28 Identities=11% Similarity=0.254 Sum_probs=24.9
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
.++||||+|+.+|+.+++.|++.|....
T Consensus 191 ~~~LVF~~s~~~~~~l~~~L~~~g~~v~ 218 (459)
T 2z83_A 191 GKTVWFVASVKMGNEIAMCLQRAGKKVI 218 (459)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEeCChHHHHHHHHHHHhcCCcEE
Confidence 5799999999999999999999876544
No 26
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.19 E-value=0.00049 Score=41.67 Aligned_cols=29 Identities=14% Similarity=0.381 Sum_probs=25.2
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
.++||||||+++|+.+++.|++.|.....
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 57999999999999999999998765443
No 27
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.15 E-value=0.00053 Score=41.64 Aligned_cols=27 Identities=11% Similarity=0.291 Sum_probs=24.1
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCce
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
.++||||+|+++|+.+++.|++.|...
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~g~~~ 215 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKSGKRV 215 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTTTCCE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHcCCeE
Confidence 479999999999999999999987654
No 28
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=97.05 E-value=0.00075 Score=40.95 Aligned_cols=29 Identities=24% Similarity=0.167 Sum_probs=24.4
Q ss_pred ceEEEEecchhhHHHHHHHHHhc---CCceee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSI---DRRLIY 30 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~---G~~~~~ 30 (33)
.++||||+|+..|+.+++.|.+. |.....
T Consensus 340 ~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~ 371 (563)
T 3i5x_A 340 YKAIIFAPTVKFTSFLCSILKNEFKKDLPILE 371 (563)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHTTTSCEEE
T ss_pred CcEEEEcCcHHHHHHHHHHHHHhccCCceEEE
Confidence 48999999999999999999987 555443
No 29
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=97.03 E-value=0.00096 Score=38.00 Aligned_cols=29 Identities=7% Similarity=0.080 Sum_probs=25.2
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
.++||||+++..++.|++.|++.|.....
T Consensus 362 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~ 390 (494)
T 1wp9_A 362 SKIIVFTNYRETAKKIVNELVKDGIKAKR 390 (494)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEEccHHHHHHHHHHHHHcCCCcEE
Confidence 47999999999999999999998765443
No 30
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.02 E-value=0.00074 Score=43.81 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=26.0
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
.++||||+|+++|+.+++.|++.|.....+
T Consensus 411 ~~~lVF~~s~~~~e~la~~L~~~g~~v~~l 440 (673)
T 2wv9_A 411 GKTVWFVASVKMSNEIAQCLQRAGKRVIQL 440 (673)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCEEEEECCHHHHHHHHHHHHhCCCeEEEe
Confidence 589999999999999999999987765443
No 31
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.01 E-value=0.00091 Score=42.99 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=26.5
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
.++||||+|+..|++|++.|.+.|....++
T Consensus 440 ~~vlVf~~t~~~ae~L~~~L~~~gi~~~~l 469 (664)
T 1c4o_A 440 ERTLVTVLTVRMAEELTSFLVEHGIRARYL 469 (664)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCCceee
Confidence 489999999999999999999998766553
No 32
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=97.01 E-value=0.00075 Score=41.83 Aligned_cols=24 Identities=17% Similarity=0.391 Sum_probs=22.7
Q ss_pred ceEEEEecchhhHHHHHHHHHhcC
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G 25 (33)
.++||||+++..|+.|++.|++.|
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~ 422 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNP 422 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCT
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCC
Confidence 479999999999999999999987
No 33
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.98 E-value=0.001 Score=42.75 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=25.9
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
.++||||+|+..|++|++.|++.|....+
T Consensus 446 ~~vlVf~~t~~~ae~L~~~L~~~gi~~~~ 474 (661)
T 2d7d_A 446 ERVLVTTLTKKMSEDLTDYLKEIGIKVNY 474 (661)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCCeEE
Confidence 48999999999999999999999876544
No 34
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=96.88 E-value=0.0013 Score=40.65 Aligned_cols=28 Identities=25% Similarity=0.205 Sum_probs=24.1
Q ss_pred ceEEEEecchhhHHHHHHHHHhc---CCcee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSI---DRRLI 29 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~---G~~~~ 29 (33)
.++||||+|+..|+.+++.|++. |....
T Consensus 289 ~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~ 319 (579)
T 3sqw_A 289 YKAIIFAPTVKFTSFLCSILKNEFKKDLPIL 319 (579)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTTTSCEE
T ss_pred CcEEEECCcHHHHHHHHHHHHHhhcCCCcEE
Confidence 47999999999999999999987 55443
No 35
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=96.85 E-value=0.0009 Score=39.53 Aligned_cols=24 Identities=17% Similarity=0.493 Sum_probs=22.5
Q ss_pred ceEEEEecchhhHHHHHHHHHhcC
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G 25 (33)
.++||||+++..++.|++.|++.|
T Consensus 390 ~k~lVF~~~~~~~~~l~~~L~~~~ 413 (555)
T 3tbk_A 390 TKTILFVKTRALVDALKKWIEENP 413 (555)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHCG
T ss_pred ceEEEEeCcHHHHHHHHHHHhhCc
Confidence 589999999999999999999875
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=96.83 E-value=0.00096 Score=41.35 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=21.8
Q ss_pred ceEEEEecchhhHHHHHHHHHhc
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSI 24 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~ 24 (33)
.++||||+|+..++.|++.|++.
T Consensus 401 ~~~IVF~~s~~~~~~l~~~L~~~ 423 (699)
T 4gl2_A 401 ARGIIFTKTRQSAYALSQWITEN 423 (699)
T ss_dssp CCEEEECSCHHHHHHHHHHHHSS
T ss_pred CcEEEEECcHHHHHHHHHHHHhC
Confidence 57999999999999999999987
No 37
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.76 E-value=0.0014 Score=40.42 Aligned_cols=25 Identities=24% Similarity=0.664 Sum_probs=22.6
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCC
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
.++||||+++..|+.+++.|++.+.
T Consensus 440 ~k~lVF~~~~~~a~~l~~~L~~~~~ 464 (590)
T 3h1t_A 440 AKTIVFCVDQEHADEMRRALNNLNS 464 (590)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTH
T ss_pred ccEEEEECCHHHHHHHHHHHHHhhh
Confidence 5899999999999999999988754
No 38
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=96.75 E-value=0.00023 Score=40.57 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=0.0
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
.++||||+|++.++.+++.|++.|....+
T Consensus 260 ~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ 288 (394)
T 1fuu_A 260 TQAVIFCNTRRKVEELTTKLRNDKFTVSA 288 (394)
T ss_dssp -----------------------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHcCCeEEE
Confidence 47899999999999999999988765443
No 39
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=96.71 E-value=0.0014 Score=44.47 Aligned_cols=27 Identities=7% Similarity=-0.002 Sum_probs=24.2
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCce
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
.++||||+|++.++.|++.|.+.|...
T Consensus 433 ~pvLVft~s~~~se~Ls~~L~~~gi~~ 459 (844)
T 1tf5_A 433 QPVLVGTVAVETSELISKLLKNKGIPH 459 (844)
T ss_dssp CCEEEEESCHHHHHHHHHHHHTTTCCC
T ss_pred CcEEEEECCHHHHHHHHHHHHHCCCCE
Confidence 369999999999999999999998653
No 40
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=96.60 E-value=0.00088 Score=41.03 Aligned_cols=29 Identities=17% Similarity=0.477 Sum_probs=25.4
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
.++||||+++..|+.+++.|.+.|.+...
T Consensus 358 ~~~LVF~~s~~~a~~l~~~L~~~~~~v~~ 386 (508)
T 3fho_A 358 GQSIIFCKKKDTAEEIARRMTADGHTVAC 386 (508)
T ss_dssp CCEEEBCSSTTTTTHHHHHHTTTTCCCCE
T ss_pred CcEEEEECCHHHHHHHHHHHHhCCCcEEE
Confidence 57999999999999999999998776544
No 41
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=96.58 E-value=0.0022 Score=43.60 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=25.4
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
.++||||||+..|+.|++.|++.|....
T Consensus 310 ~~~LVF~~s~~~a~~l~~~L~~~g~~~~ 337 (1104)
T 4ddu_A 310 DGILIFAQTEEEGKELYEYLKRFKFNVG 337 (1104)
T ss_dssp SSEEEEESSSHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCCCee
Confidence 5799999999999999999999987654
No 42
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.54 E-value=0.00038 Score=41.58 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=0.0
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
.++||||+|+..|+.|++.|.+.|.+..+
T Consensus 334 ~~~lvF~~s~~~~~~l~~~L~~~~~~v~~ 362 (479)
T 3fmp_B 334 AQAMIFCHTRKTASWLAAELSKEGHQVAL 362 (479)
T ss_dssp -----------------------------
T ss_pred CceEEEeCcHHHHHHHHHHHHhCCccEEE
Confidence 47899999999999999999998866544
No 43
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=96.52 E-value=0.0024 Score=43.62 Aligned_cols=27 Identities=11% Similarity=-0.001 Sum_probs=24.3
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCce
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
.++||||+|++.++.|++.|.+.|...
T Consensus 475 qpVLVFt~S~e~sE~Ls~~L~~~Gi~~ 501 (822)
T 3jux_A 475 QPVLVGTTSIEKSELLSSMLKKKGIPH 501 (822)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTTTCCC
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCE
Confidence 479999999999999999999988653
No 44
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=96.32 E-value=0.0037 Score=42.60 Aligned_cols=27 Identities=7% Similarity=-0.023 Sum_probs=24.2
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCce
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
.++||||+|++.++.|++.|.+.|...
T Consensus 442 qpvLVft~sie~se~Ls~~L~~~gi~~ 468 (853)
T 2fsf_A 442 QPVLVGTISIEKSELVSNELTKAGIKH 468 (853)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCE
Confidence 369999999999999999999998653
No 45
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=96.28 E-value=0.0033 Score=37.32 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.5
Q ss_pred ceEEEEecchhhHHHHHHHHHhc
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSI 24 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~ 24 (33)
.++||||+++..++.|++.|++.
T Consensus 391 ~k~lVF~~~~~~~~~l~~~L~~~ 413 (556)
T 4a2p_A 391 TRTLLFAKTRALVSALKKCMEEN 413 (556)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTC
T ss_pred ceEEEEEccHHHHHHHHHHHHhC
Confidence 58999999999999999999886
No 46
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=96.09 E-value=0.0057 Score=42.13 Aligned_cols=27 Identities=15% Similarity=0.030 Sum_probs=24.2
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCce
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
.++||||+|++.++.|++.|.+.|...
T Consensus 461 qpvLVft~Sie~sE~Ls~~L~~~Gi~~ 487 (922)
T 1nkt_A 461 QPVLIGTTSVERSEYLSRQFTKRRIPH 487 (922)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCCC
T ss_pred CcEEEEECCHHHHHHHHHHHHHCCCCE
Confidence 369999999999999999999998653
No 47
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.02 E-value=0.0063 Score=38.35 Aligned_cols=24 Identities=8% Similarity=0.157 Sum_probs=21.9
Q ss_pred ceEEEEecchhhHHHHHHHHHhcC
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G 25 (33)
.++||||+++.+|+.+++.|.+..
T Consensus 253 ~~~LVF~~s~~~~~~~a~~L~~~~ 276 (715)
T 2va8_A 253 GQVLVFRNSRKMAESTALKIANYM 276 (715)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCHHHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 48
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.95 E-value=0.0058 Score=38.68 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=21.1
Q ss_pred ceEEEEecchhhHHHHHHHHHhc
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSI 24 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~ 24 (33)
.++||||+|+.+|+.+++.|.+.
T Consensus 238 ~~~LVF~~sr~~~~~~a~~L~~~ 260 (720)
T 2zj8_A 238 KGALIFVNMRRKAERVALELSKK 260 (720)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCHHHHHHHHHHHHHH
Confidence 58999999999999999999875
No 49
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=95.84 E-value=0.012 Score=34.13 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=24.2
Q ss_pred ceEEEEecchhhHHHHHHHHHhc-CCcee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSI-DRRLI 29 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~-G~~~~ 29 (33)
+++||||+++..++.|.+.|.+. |....
T Consensus 113 ~kvlIFs~~~~~~~~l~~~L~~~~g~~~~ 141 (271)
T 1z5z_A 113 DKIAIFTQFVDMGKIIRNIIEKELNTEVP 141 (271)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHCSCCC
T ss_pred CeEEEEeccHHHHHHHHHHHHHhcCCcEE
Confidence 58999999999999999999985 76543
No 50
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=95.79 E-value=0.0056 Score=41.21 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=21.3
Q ss_pred ceEEEEecchhhHHHHHHHHHhc
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSI 24 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~ 24 (33)
.++||||+|+..|+.|++.|++.
T Consensus 276 ~~~LVF~~t~~~a~~l~~~L~~~ 298 (1054)
T 1gku_B 276 TGGIIYARTGEEAEEIYESLKNK 298 (1054)
T ss_dssp SCEEEEESSHHHHHHHHHTTTTS
T ss_pred CCEEEEEcCHHHHHHHHHHHhhc
Confidence 47999999999999999999876
No 51
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=95.76 E-value=0.0079 Score=37.97 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.9
Q ss_pred ceEEEEecchhhHHHHHHHHHhc
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSI 24 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~ 24 (33)
.++||||+|+.+|+.+++.|.+.
T Consensus 243 ~~~LVF~~s~~~~~~~a~~L~~~ 265 (702)
T 2p6r_A 243 GGVLVFESTRRGAEKTAVKLSAI 265 (702)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCHHHHHHHHHHHHHH
Confidence 57999999999999999999864
No 52
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=95.67 E-value=0.0099 Score=39.35 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.8
Q ss_pred ceEEEEecchhhHHHHHHHHHhc
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSI 24 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~ 24 (33)
.++||||+|+..++.|++.|++.
T Consensus 632 ~rvLIF~~t~~~ae~L~~~L~~~ 654 (936)
T 4a2w_A 632 TRTLLFAKTRALVSALKKCMEEN 654 (936)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHC
T ss_pred CeEEEEeCCHHHHHHHHHHHhhC
Confidence 58999999999999999999987
No 53
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.60 E-value=0.0032 Score=34.95 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.3
Q ss_pred ceEEEEecchhhHHHHHHHHH
Q psy8719 2 DRALIFCRTKLDCDNLERYLN 22 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~ 22 (33)
.++||||+|++.++.+++.|.
T Consensus 221 ~~~lvf~~~~~~~~~l~~~l~ 241 (337)
T 2z0m_A 221 KGVIVFVRTRNRVAKLVRLFD 241 (337)
T ss_dssp SSEEEECSCHHHHHHHHTTCT
T ss_pred CcEEEEEcCHHHHHHHHHHhh
Confidence 479999999999999999886
No 54
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=95.33 E-value=0.015 Score=37.43 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.4
Q ss_pred ceEEEEecchhhHHHHHHHHHhc
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSI 24 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~ 24 (33)
.++||||+++..++.|++.|++.
T Consensus 632 ~kvLIF~~~~~~~~~L~~~L~~~ 654 (797)
T 4a2q_A 632 TRTLLFAKTRALVSALKKCMEEN 654 (797)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTC
T ss_pred CeEEEEECcHHHHHHHHHHHHhC
Confidence 57999999999999999999885
No 55
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=95.23 E-value=0.0082 Score=40.37 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=22.4
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCC
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
.++||||+|+..|+.+++.|.+.|.
T Consensus 337 ~~~IVF~~sr~~~e~la~~L~~~~~ 361 (997)
T 4a4z_A 337 LPMVVFVFSKKRCEEYADWLEGINF 361 (997)
T ss_dssp CSEEEECSCHHHHHHHHHTTTTCCC
T ss_pred CCEEEEECCHHHHHHHHHHHhcCCC
Confidence 4799999999999999999987664
No 56
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.17 E-value=0.024 Score=37.18 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=20.5
Q ss_pred ceEEEEecchhhHHHHHHHHHh
Q psy8719 2 DRALIFCRTKLDCDNLERYLNS 23 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~ 23 (33)
.++||||+++.+++.+++.|.+
T Consensus 304 g~iLVF~~~~~~i~~l~~~L~~ 325 (773)
T 2xau_A 304 GDILLFLTGEDEIEDAVRKISL 325 (773)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHH
Confidence 5899999999999999999985
No 57
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=95.14 E-value=0.016 Score=38.61 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=24.3
Q ss_pred ceEEEEecchhhHHHHHHHHHh-cCCceee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNS-IDRRLIY 30 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~-~G~~~~~ 30 (33)
.++||||+++..++.|++.|++ .|.....
T Consensus 504 ~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~ 533 (968)
T 3dmq_A 504 QKVLVICAKAATALQLEQVLREREGIRAAV 533 (968)
T ss_dssp SCCCEECSSTHHHHHHHHHHHTTTCCCEEE
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHcCCcEEE
Confidence 5899999999999999999995 5765443
No 58
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=94.97 E-value=0.011 Score=39.82 Aligned_cols=25 Identities=24% Similarity=0.551 Sum_probs=22.0
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCC
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
.++||||+|+..|+.+++.|.+.|.
T Consensus 344 ~~~IVF~~sr~~~e~la~~L~~~~~ 368 (1010)
T 2xgj_A 344 NPVIVFSFSKRDCEELALKMSKLDF 368 (1010)
T ss_dssp CSEEEEESSHHHHHHHHHTTTTSCC
T ss_pred CCEEEEECCHHHHHHHHHHHHhCCC
Confidence 3799999999999999999987654
No 59
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=94.83 E-value=0.01 Score=40.43 Aligned_cols=24 Identities=25% Similarity=0.618 Sum_probs=21.1
Q ss_pred ceEEEEecchhhHHHHHHHHHhcC
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G 25 (33)
.++||||+++..|+.++..|...|
T Consensus 442 ~~vIVF~~sr~~~e~la~~L~~~~ 465 (1108)
T 3l9o_A 442 NPVIVFSFSKRDCEELALKMSKLD 465 (1108)
T ss_dssp CCEEEEESCHHHHHHHHHHTCSHH
T ss_pred CCEEEEeCcHHHHHHHHHHHHhcc
Confidence 479999999999999999997643
No 60
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=94.70 E-value=0.016 Score=41.13 Aligned_cols=22 Identities=14% Similarity=0.433 Sum_probs=19.9
Q ss_pred ceEEEEecchhhHHHHHHHHHh
Q psy8719 2 DRALIFCRTKLDCDNLERYLNS 23 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~ 23 (33)
.++||||+||.+|+++|+.|.+
T Consensus 318 ~~~LVF~~sR~~~~~~A~~l~~ 339 (1724)
T 4f92_B 318 NQVLVFVHSRKETGKTARAIRD 339 (1724)
T ss_dssp CCEEEECSSTTTTHHHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHHH
Confidence 4799999999999999999865
No 61
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=94.69 E-value=0.039 Score=36.06 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=25.2
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
..||||+|+++++++++.|++.|.+..++
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~l 350 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVI 350 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeee
Confidence 46899999999999999999988776554
No 62
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=94.43 E-value=0.047 Score=32.63 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=24.7
Q ss_pred ceEEEEecchhhHHHHHHHHHhc-CCceee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSI-DRRLIY 30 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~-G~~~~~ 30 (33)
+++||||+++..++.|++.|.+. |....+
T Consensus 342 ~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~ 371 (500)
T 1z63_A 342 DKIAIFTQFVDMGKIIRNIIEKELNTEVPF 371 (500)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHTCCCCE
T ss_pred CcEEEEEehHHHHHHHHHHHHHhhCCCeEE
Confidence 47999999999999999999986 765543
No 63
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=94.43 E-value=0.064 Score=34.06 Aligned_cols=29 Identities=10% Similarity=0.140 Sum_probs=25.7
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
+++||||+++..++.|.+.|+..|.....
T Consensus 417 ~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 417 DKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred CEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 48999999999999999999999876544
No 64
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=94.01 E-value=0.16 Score=24.15 Aligned_cols=30 Identities=10% Similarity=0.269 Sum_probs=25.9
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
+..||+|++-..+...+..|++.|....|.
T Consensus 42 ~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~ 71 (85)
T 2jtq_A 42 DTVKVYCNAGRQSGQAKEILSEMGYTHVEN 71 (85)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHTTCSSEEE
T ss_pred CcEEEEcCCCchHHHHHHHHHHcCCCCEEe
Confidence 368999999999999999999999876553
No 65
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=93.83 E-value=0.13 Score=24.90 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=25.8
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
..||+|++-..+...+..|++.|.. .|..
T Consensus 55 ~ivvyC~~g~rs~~a~~~L~~~G~~-v~~l 83 (94)
T 1wv9_A 55 PLLLVCEKGLLSQVAALYLEAEGYE-AMSL 83 (94)
T ss_dssp CEEEECSSSHHHHHHHHHHHHHTCC-EEEE
T ss_pred CEEEEcCCCChHHHHHHHHHHcCCc-EEEE
Confidence 5799999999999999999999998 7654
No 66
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.81 E-value=0.053 Score=37.01 Aligned_cols=23 Identities=4% Similarity=0.078 Sum_probs=21.8
Q ss_pred ceEEEEecchhhHHHHHHHHHhc
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSI 24 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~ 24 (33)
.++|||||+++.++.+++.|++.
T Consensus 813 ~qvlvf~~~v~~~~~l~~~L~~~ 835 (1151)
T 2eyq_A 813 GQVYYLYNDVENIQKAAERLAEL 835 (1151)
T ss_dssp CEEEEECCCSSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHh
Confidence 58999999999999999999987
No 67
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=93.54 E-value=0.19 Score=24.52 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=25.9
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
+..||+|++-..+...+..|++.|. ..|.+
T Consensus 57 ~~ivvyC~~g~rs~~a~~~L~~~G~-~v~~l 86 (100)
T 3foj_A 57 ETYYIICKAGGRSAQVVQYLEQNGV-NAVNV 86 (100)
T ss_dssp SEEEEECSSSHHHHHHHHHHHTTTC-EEEEE
T ss_pred CcEEEEcCCCchHHHHHHHHHHCCC-CEEEe
Confidence 3689999999999999999999999 66653
No 68
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=93.40 E-value=0.18 Score=24.67 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=25.8
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
+..||+|++-..+...+..|++.|. ..|++
T Consensus 57 ~~iv~yC~~g~rs~~a~~~L~~~G~-~v~~l 86 (103)
T 3eme_A 57 EIYYIVCAGGVRSAKVVEYLEANGI-DAVNV 86 (103)
T ss_dssp SEEEEECSSSSHHHHHHHHHHTTTC-EEEEE
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC-CeEEe
Confidence 3589999999999999999999999 66654
No 69
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=93.15 E-value=0.2 Score=24.85 Aligned_cols=30 Identities=7% Similarity=0.019 Sum_probs=26.3
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
.+||+|++-..+...+..|++.|....|.+
T Consensus 54 ~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l 83 (106)
T 3hix_A 54 DIYVYGAGDEQTSQAVNLLRSAGFEHVSEL 83 (106)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCSCEEEC
T ss_pred eEEEEECCCChHHHHHHHHHHcCCcCEEEe
Confidence 579999999999999999999999876653
No 70
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=92.96 E-value=0.025 Score=33.59 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=19.2
Q ss_pred ceEEEEecchhhHHHHHHHHH
Q psy8719 2 DRALIFCRTKLDCDNLERYLN 22 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~ 22 (33)
+++||||+++..++.|++.|.
T Consensus 350 ~k~lvF~~~~~~~~~l~~~l~ 370 (472)
T 2fwr_A 350 DKIIIFTRHNELVYRISKVFL 370 (472)
T ss_dssp SCBCCBCSCHHHHHHHHHHTT
T ss_pred CcEEEEECCHHHHHHHHHHhC
Confidence 578999999999999999884
No 71
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=92.85 E-value=0.18 Score=24.86 Aligned_cols=31 Identities=13% Similarity=0.331 Sum_probs=26.6
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
+..||+|++-..+...+..|++.|....|++
T Consensus 59 ~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l 89 (108)
T 1gmx_A 59 TPVMVMCYHGNSSKGAAQYLLQQGYDVVYSI 89 (108)
T ss_dssp SCEEEECSSSSHHHHHHHHHHHHTCSSEEEE
T ss_pred CCEEEEcCCCchHHHHHHHHHHcCCceEEEe
Confidence 3579999999999999999999999766653
No 72
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=92.52 E-value=0.26 Score=24.54 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=25.8
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
..+||+|++-..+...+..|++.|. ..|.+
T Consensus 56 ~~ivvyC~~G~rs~~aa~~L~~~G~-~v~~l 85 (108)
T 3gk5_A 56 KKYAVICAHGNRSAAAVEFLSQLGL-NIVDV 85 (108)
T ss_dssp SCEEEECSSSHHHHHHHHHHHTTTC-CEEEE
T ss_pred CeEEEEcCCCcHHHHHHHHHHHcCC-CEEEE
Confidence 3589999999999999999999998 66653
No 73
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=92.25 E-value=0.27 Score=25.00 Aligned_cols=31 Identities=6% Similarity=0.196 Sum_probs=26.6
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
+.+||+|++-..+...+..|++.|....|.+
T Consensus 87 ~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l 117 (139)
T 2hhg_A 87 KKFVFYCAGGLRSALAAKTAQDMGLKPVAHI 117 (139)
T ss_dssp SEEEEECSSSHHHHHHHHHHHHHTCCSEEEE
T ss_pred CeEEEECCCChHHHHHHHHHHHcCCCCeEEe
Confidence 3589999999999999999999998766653
No 74
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=92.24 E-value=0.28 Score=24.47 Aligned_cols=29 Identities=17% Similarity=0.459 Sum_probs=25.2
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
+..||+|++-..+...+..|++.|... |.
T Consensus 57 ~~ivvyC~~G~rs~~aa~~L~~~G~~~-~~ 85 (110)
T 2k0z_A 57 KKVLLHCRAGRRALDAAKSMHELGYTP-YY 85 (110)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHTTCCC-EE
T ss_pred CEEEEEeCCCchHHHHHHHHHHCCCCE-EE
Confidence 357999999999999999999999876 54
No 75
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=92.11 E-value=0.23 Score=25.92 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=26.0
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
.+||+|++-..+...+..|++.|....|.+
T Consensus 82 ~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l 111 (148)
T 2fsx_A 82 PVIFLCRSGNRSIGAAEVATEAGITPAYNV 111 (148)
T ss_dssp CEEEECSSSSTHHHHHHHHHHTTCCSEEEE
T ss_pred EEEEEcCCChhHHHHHHHHHHcCCcceEEE
Confidence 579999999999999999999998766654
No 76
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=92.07 E-value=0.1 Score=35.73 Aligned_cols=23 Identities=4% Similarity=0.047 Sum_probs=21.6
Q ss_pred eEEEEecchhhHHHHHHHHHhcC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G 25 (33)
++||||++++.|.++++.|++.+
T Consensus 539 kamVf~~S~~~A~~~~~~l~~~~ 561 (1038)
T 2w00_A 539 NAMLAVSSVDAAKAYYATFKRLQ 561 (1038)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHhhh
Confidence 79999999999999999998876
No 77
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=91.72 E-value=0.27 Score=24.98 Aligned_cols=29 Identities=14% Similarity=-0.026 Sum_probs=25.0
Q ss_pred eEEEEecchhh--HHHHHHHHHhcCCceeeee
Q psy8719 3 RALIFCRTKLD--CDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 3 ~aIVF~nTK~~--ad~La~~L~~~G~~~~~~~ 32 (33)
.+||+|++-.. +...+..|++.|.. .|.+
T Consensus 73 ~ivvyC~~g~r~~s~~a~~~L~~~G~~-v~~l 103 (124)
T 3flh_A 73 TYVVYDWTGGTTLGKTALLVLLSAGFE-AYEL 103 (124)
T ss_dssp EEEEECSSSSCSHHHHHHHHHHHHTCE-EEEE
T ss_pred eEEEEeCCCCchHHHHHHHHHHHcCCe-EEEe
Confidence 58899999888 89999999999997 6653
No 78
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=91.25 E-value=0.29 Score=31.77 Aligned_cols=29 Identities=28% Similarity=0.262 Sum_probs=25.5
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
.++||||.....++.|.+.|...|.....
T Consensus 573 ~kvLIFsq~~~~ld~L~~~L~~~g~~~~~ 601 (800)
T 3mwy_W 573 HRVLIFSQMVRMLDILGDYLSIKGINFQR 601 (800)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHTCCCEE
T ss_pred CeEEEEechHHHHHHHHHHHHhCCCCEEE
Confidence 47999999999999999999998876543
No 79
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=91.25 E-value=0.17 Score=36.10 Aligned_cols=22 Identities=5% Similarity=0.089 Sum_probs=19.2
Q ss_pred ceEEEEecchhhHHHHHHHHHh
Q psy8719 2 DRALIFCRTKLDCDNLERYLNS 23 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~ 23 (33)
.++||||+||.+|+.+|..|..
T Consensus 1156 ~~~lVF~~sR~~~~~~A~~L~~ 1177 (1724)
T 4f92_B 1156 KPVIVFVPSRKQTRLTAIDILT 1177 (1724)
T ss_dssp SCEEEEESSHHHHHHHHHHHHH
T ss_pred CCeeeeCCCHHHHHHHHHHHHH
Confidence 4799999999999999988754
No 80
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=91.11 E-value=0.46 Score=24.88 Aligned_cols=31 Identities=6% Similarity=0.015 Sum_probs=26.5
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
+.+||+|++-..+...+..|++.|....|.+
T Consensus 57 ~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l 87 (141)
T 3ilm_A 57 RDIYVYGAGDEQTSQAVNLLRSAGFEHVSEL 87 (141)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTTCCSEEEC
T ss_pred CeEEEEECCChHHHHHHHHHHHcCCCCEEEe
Confidence 3579999999999999999999998766653
No 81
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=91.02 E-value=0.48 Score=23.51 Aligned_cols=30 Identities=23% Similarity=0.557 Sum_probs=24.9
Q ss_pred ceEEEEe-cchhhHHHHHHHHHhcCCceeeee
Q psy8719 2 DRALIFC-RTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 2 ~~aIVF~-nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
+.+||+| ++-..+...+..|++.|. ..|.+
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~-~v~~l 120 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGV-NVYQL 120 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTC-CCEEE
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCC-ceEEE
Confidence 4689999 688899999999999998 55543
No 82
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=90.91 E-value=0.32 Score=25.27 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=26.7
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
+.+||+|++-..+...+..|++.|....|.+
T Consensus 83 ~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l 113 (137)
T 1qxn_A 83 KPVVVFCKTAARAALAGKTLREYGFKTIYNS 113 (137)
T ss_dssp SCEEEECCSSSCHHHHHHHHHHHTCSCEEEE
T ss_pred CeEEEEcCCCcHHHHHHHHHHHcCCcceEEE
Confidence 3589999999999999999999998766654
No 83
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=90.89 E-value=0.47 Score=24.21 Aligned_cols=30 Identities=7% Similarity=0.174 Sum_probs=25.9
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
.+||+|++-..+...+..|++.|....|.+
T Consensus 93 ~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l 122 (139)
T 3d1p_A 93 ELIFYCASGKRGGEAQKVASSHGYSNTSLY 122 (139)
T ss_dssp EEEEECSSSHHHHHHHHHHHTTTCCSEEEC
T ss_pred eEEEECCCCchHHHHHHHHHHcCCCCeEEe
Confidence 578999999999999999999998766543
No 84
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=90.71 E-value=0.29 Score=25.05 Aligned_cols=30 Identities=10% Similarity=-0.032 Sum_probs=25.7
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
+..||+|++-..+...+..|++.|....|.
T Consensus 83 ~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~ 112 (129)
T 1tq1_A 83 DNIIVGCQSGGRSIKATTDLLHAGFTGVKD 112 (129)
T ss_dssp SSEEEEESSCSHHHHHHHHHHHHHCCSEEE
T ss_pred CeEEEECCCCcHHHHHHHHHHHcCCCCeEE
Confidence 357999999999999999999999875554
No 85
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=90.34 E-value=0.51 Score=26.45 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=26.9
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
-.|||+++++.+..|.+.+.+...++.|.
T Consensus 67 Glll~ak~~~~~~~l~~~f~~~~v~K~Y~ 95 (217)
T 2i82_A 67 GVIVVALTKAAERELKRQFREREPKKQYV 95 (217)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCSEEEEE
T ss_pred EEEEEEeCHHHHHHHHHHHHhCCeeEEEE
Confidence 47999999999999999999999999986
No 86
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=90.33 E-value=0.58 Score=26.41 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=26.2
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
-+|.+|+.++.++.|.+.++++|.+..|-
T Consensus 298 c~ial~~~~~~~~~i~~~~~~~Gi~~~y~ 326 (335)
T 3gon_A 298 CGIALSFDAQSTKTLKNRWADLGIELLYQ 326 (335)
T ss_dssp EEEEEECSHHHHHHHHHHHHHTTCEEEEE
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEee
Confidence 47889999999999999999999998874
No 87
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=90.14 E-value=0.52 Score=24.17 Aligned_cols=29 Identities=7% Similarity=0.015 Sum_probs=25.6
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
..||+|++=..+...+..|++.|....|.
T Consensus 76 ~ivv~C~sG~RS~~aa~~L~~~G~~~v~~ 104 (134)
T 1vee_A 76 TLYILDKFDGNSELVAELVALNGFKSAYA 104 (134)
T ss_dssp EEEEECSSSTTHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHHHcCCcceEE
Confidence 58999999999999999999999876664
No 88
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=90.02 E-value=0.56 Score=26.48 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=26.7
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
-.|||+++++.+..|.+.+.+...++.|.
T Consensus 58 Glll~ak~~~~~~~l~~~~~~~~v~K~Y~ 86 (228)
T 1v9k_A 58 GVLLVAKKRSALRSLHEQLREKGMQKDYL 86 (228)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCSEEEEE
T ss_pred EEEEEEeCHHHHHHHHHHHHhCCeeEEEE
Confidence 47999999999999999999999999886
No 89
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=87.91 E-value=1 Score=23.54 Aligned_cols=30 Identities=7% Similarity=0.161 Sum_probs=24.8
Q ss_pred ceEEEEecch--hhHHHHHHHHHhcCCceeeee
Q psy8719 2 DRALIFCRTK--LDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 2 ~~aIVF~nTK--~~ad~La~~L~~~G~~~~~~~ 32 (33)
+.+||+|++- ..+...+..|++.|.. .|.+
T Consensus 73 ~~ivvyC~~g~~~rs~~aa~~L~~~G~~-v~~l 104 (144)
T 3nhv_A 73 KVIITYCWGPACNGATKAAAKFAQLGFR-VKEL 104 (144)
T ss_dssp SEEEEECSCTTCCHHHHHHHHHHHTTCE-EEEE
T ss_pred CeEEEEECCCCccHHHHHHHHHHHCCCe-EEEe
Confidence 3578999998 6899999999999995 6543
No 90
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=87.57 E-value=0.79 Score=27.37 Aligned_cols=25 Identities=4% Similarity=0.040 Sum_probs=19.8
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCce
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
..||||+ ...|+.|++.|.+.|...
T Consensus 350 ~~ivf~~-~~~~~~l~~~L~~~~~~v 374 (510)
T 2oca_A 350 AFVMFKH-VSHGKAIFDLIKNEYDKV 374 (510)
T ss_dssp EEEEESS-HHHHHHHHHHHHTTCSSE
T ss_pred eEEEEec-HHHHHHHHHHHHHcCCCe
Confidence 4577777 778888999999987643
No 91
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=86.93 E-value=1.2 Score=24.40 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=25.3
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
+..|++|++=..+...+..|++.| ...+.+
T Consensus 185 ~~iv~~C~~G~rs~~a~~~L~~~G-~~v~~~ 214 (230)
T 2eg4_A 185 QEVGVYCHSGARSAVAFFVLRSLG-VRARNY 214 (230)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHTT-CEEEEC
T ss_pred CCEEEEcCChHHHHHHHHHHHHcC-CCcEEe
Confidence 357999999999999999999999 655543
No 92
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=86.46 E-value=0.28 Score=29.04 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=24.5
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
.-||||+|+..|+++|.+.|++.|....
T Consensus 44 G~~LIinn~~~D~~~L~~~f~~LgF~V~ 71 (272)
T 3h11_A 44 GICLIIDCIGNETELLRDTFTSLGYEVQ 71 (272)
T ss_dssp EEEEEEESSCCCCSHHHHHHHHHTEEEE
T ss_pred eEEEEECCchHHHHHHHHHHHHCCCEEE
Confidence 3589999999999999999999987644
No 93
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=86.19 E-value=1.3 Score=26.21 Aligned_cols=29 Identities=14% Similarity=0.072 Sum_probs=26.7
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
-.|||+++++.+..|.+.+.+...++.|.
T Consensus 143 Glll~ak~~~~~~~l~~~~~~~~v~K~Y~ 171 (325)
T 1v9f_A 143 GLMVVAKTVPAQTRLVESLQRREITREYE 171 (325)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCSEEEEE
T ss_pred eEEEEEcCHHHHHHHHHHHHcCCeeEEEE
Confidence 47999999999999999999999999886
No 94
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=85.43 E-value=1.4 Score=24.57 Aligned_cols=31 Identities=6% Similarity=0.069 Sum_probs=26.2
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
+.+||+|++-..+...+..|+..|....|.+
T Consensus 224 ~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l 254 (271)
T 1e0c_A 224 KEIVTHCQTHHRSGLTYLIAKALGYPRVKGY 254 (271)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHTTCSCEEEC
T ss_pred CCEEEECCchHHHHHHHHHHHHcCCCCceee
Confidence 3689999999999999999999998755543
No 95
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=85.37 E-value=1.7 Score=21.38 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=20.6
Q ss_pred eEEEEecchhhHHHHHHHHHhc
Q psy8719 3 RALIFCRTKLDCDNLERYLNSI 24 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~ 24 (33)
.+||+|++-..+...+..|.+.
T Consensus 74 ~ivv~C~~G~rs~~a~~~L~~~ 95 (127)
T 3i2v_A 74 PIYVICKLGNDSQKAVKILQSL 95 (127)
T ss_dssp EEEEECSSSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCcHHHHHHHHHHh
Confidence 6899999999999999999999
No 96
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=85.17 E-value=1.7 Score=21.70 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=23.3
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCce
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
..+|.|++-..+...+..|++.|...
T Consensus 58 ~ivv~C~~G~rS~~aa~~L~~~G~~~ 83 (103)
T 3iwh_A 58 IYYIVCAGGVRSAKVVEYLEANGIDA 83 (103)
T ss_dssp EEEEECSSSSHHHHHHHHHHTTTCEE
T ss_pred eEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 57899999999999999999999854
No 97
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=84.21 E-value=1.6 Score=25.61 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=17.4
Q ss_pred chhhHHHHHHHHHhcCCceee
Q psy8719 10 TKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 10 TK~~ad~La~~L~~~G~~~~~ 30 (33)
|..|++.|.+.|++.|.....
T Consensus 47 t~~D~~~L~~~f~~LGF~V~~ 67 (271)
T 3h11_B 47 THLDAGALTTTFEELHFEIKP 67 (271)
T ss_dssp HHHHHHHHHHHHHHTTCEEEE
T ss_pred cHHHHHHHHHHHHHCCCEEEE
Confidence 568999999999999986543
No 98
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=83.29 E-value=1.6 Score=24.43 Aligned_cols=31 Identities=10% Similarity=0.218 Sum_probs=26.1
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
+..||+|++=..+...+..|++.|....|.+
T Consensus 231 ~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~ 261 (280)
T 1urh_A 231 KPIIVSCGSGVTAAVVLLALATLDVPNVKLY 261 (280)
T ss_dssp SCEEEECCSSSTHHHHHHHHHHTTCSSCEEE
T ss_pred CCEEEECChHHHHHHHHHHHHHcCCCCceee
Confidence 3579999999999999999999998755543
No 99
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=82.99 E-value=1.9 Score=25.32 Aligned_cols=31 Identities=16% Similarity=0.606 Sum_probs=26.8
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
+.+|++|++-..|...+..|.+.|....|..
T Consensus 182 k~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L 212 (265)
T 4f67_A 182 KKIAMFCTGGIRCEKTTAYMKELGFEHVYQL 212 (265)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCSSEEEE
T ss_pred CeEEEEeCCChHHHHHHHHHHHcCCCCEEEe
Confidence 3689999999999999999999998766653
No 100
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=82.89 E-value=1.8 Score=24.24 Aligned_cols=30 Identities=0% Similarity=-0.024 Sum_probs=24.8
Q ss_pred eEEEEecchh-hHHHHHHHHHhcCCceeeee
Q psy8719 3 RALIFCRTKL-DCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 3 ~aIVF~nTK~-~ad~La~~L~~~G~~~~~~~ 32 (33)
.+||+|++-. .+.+++..|+..|....|.+
T Consensus 81 ~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l 111 (285)
T 1uar_A 81 TVVLYGDKNNWWAAYAFWFFKYNGHKDVRLM 111 (285)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHTTCSCEEEE
T ss_pred eEEEECCCCCccHHHHHHHHHHcCCCCeEEe
Confidence 5788999876 68899999999999866653
No 101
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=82.29 E-value=2.2 Score=20.62 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=19.7
Q ss_pred ceEEEEecchhhHHHHHHHHHh
Q psy8719 2 DRALIFCRTKLDCDNLERYLNS 23 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~ 23 (33)
+..+|-|++.++++++.+.|++
T Consensus 48 DTIlvi~r~~~~a~~l~~~i~~ 69 (71)
T 1b4b_A 48 DTCLIICRTPKDAKKVSNQLLS 69 (71)
T ss_dssp SEEEEEESSHHHHHHHHHHHHT
T ss_pred CEEEEEECCHHHHHHHHHHHHH
Confidence 4679999999999999999975
No 102
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=81.82 E-value=2.8 Score=23.30 Aligned_cols=30 Identities=10% Similarity=0.081 Sum_probs=24.9
Q ss_pred eEEEEecchh-hHHHHHHHHHhcCCceeeee
Q psy8719 3 RALIFCRTKL-DCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 3 ~aIVF~nTK~-~ad~La~~L~~~G~~~~~~~ 32 (33)
.+||.|++-. .+.+++..|+..|....|+.
T Consensus 83 ~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L 113 (271)
T 1e0c_A 83 VYVVYDDEGGGWAGRFIWLLDVIGQQRYHYL 113 (271)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEcCCCCccHHHHHHHHHHcCCCCeEEe
Confidence 5788898876 88999999999999876653
No 103
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=81.33 E-value=3.3 Score=23.18 Aligned_cols=31 Identities=10% Similarity=0.199 Sum_probs=25.7
Q ss_pred ceEEEEecchhhHHHHHHHHH-hcCCceeeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLN-SIDRRLIYYF 32 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~-~~G~~~~~~~ 32 (33)
+.+||+|++-..+...+..|+ ..|....+.+
T Consensus 234 ~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l 265 (285)
T 1uar_A 234 KDIVVYCRIAERSSHSWFVLKYLLGYPHVKNY 265 (285)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTSCCSCEEEE
T ss_pred CCEEEECCchHHHHHHHHHHHHHcCCCCccee
Confidence 357999999999999999999 9998655543
No 104
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=81.00 E-value=2.3 Score=23.25 Aligned_cols=30 Identities=3% Similarity=0.050 Sum_probs=24.9
Q ss_pred ceEEEEecchh-hHHHHHHHHHhcCCceeeee
Q psy8719 2 DRALIFCRTKL-DCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 2 ~~aIVF~nTK~-~ad~La~~L~~~G~~~~~~~ 32 (33)
+.+||.|++-. .+.+++..|+ .|....|..
T Consensus 62 ~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l 92 (230)
T 2eg4_A 62 SPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLW 92 (230)
T ss_dssp SSEEEECSSSCHHHHHHHHHHH-HTTCCEEEE
T ss_pred CEEEEEcCCCCccHHHHHHHHH-cCCceEEEe
Confidence 35788999988 8999999999 999866653
No 105
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=80.82 E-value=2.8 Score=23.69 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=24.6
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
..-|+-+|.+.+++++++.|++.|.+-.
T Consensus 14 g~~IlvTRp~~~a~~l~~~L~~~G~~~~ 41 (269)
T 3re1_A 14 AWRLLLTRPAEESAALARVLADAGIFSS 41 (269)
T ss_dssp CCEEEECSCHHHHHHHHHHHHTTTCEEE
T ss_pred CCEEEEeCChHHHHHHHHHHHHCCCCEE
Confidence 4568899999999999999999998754
No 106
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=80.76 E-value=3 Score=24.88 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=23.4
Q ss_pred eEEEEecc-----------hhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRT-----------KLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nT-----------K~~ad~La~~L~~~G~~~~ 29 (33)
-||||+|. ..|++.|++.|++.|....
T Consensus 62 ~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~ 99 (302)
T 3e4c_A 62 LALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD 99 (302)
T ss_dssp EEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE
Confidence 48999998 6799999999999997654
No 107
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=80.54 E-value=2.3 Score=24.23 Aligned_cols=30 Identities=7% Similarity=0.102 Sum_probs=25.5
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
.+||+|++=..+...+..|.+.|....|.+
T Consensus 242 ~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~ 271 (296)
T 1rhs_A 242 PLIATCRKGVTACHIALAAYLCGKPDVAIY 271 (296)
T ss_dssp CEEEECSSSSTHHHHHHHHHHTTCCCCEEE
T ss_pred CEEEECCcHHHHHHHHHHHHHcCCCCceee
Confidence 579999999999999999999998755543
No 108
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=80.37 E-value=2.8 Score=23.50 Aligned_cols=30 Identities=7% Similarity=0.061 Sum_probs=25.0
Q ss_pred eEEEEecchhh-HHHHHHHHHhcCCceeeee
Q psy8719 3 RALIFCRTKLD-CDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 3 ~aIVF~nTK~~-ad~La~~L~~~G~~~~~~~ 32 (33)
.+||+|++-.. +.+++..|+..|....|.+
T Consensus 88 ~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l 118 (280)
T 1urh_A 88 HLIVYDEGNLFSAPRAWWMLRTFGVEKVSIL 118 (280)
T ss_dssp EEEEECSSSCSSHHHHHHHHHHTTCSCEEEE
T ss_pred eEEEECCCCCccHHHHHHHHHHcCCCCEEEe
Confidence 57899998766 8999999999999766653
No 109
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=80.31 E-value=3.2 Score=22.11 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=22.5
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCce
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
+..-|.|+|..+++.|.+.|.+.|...
T Consensus 62 ~~iAVL~r~~~~~~~l~~~L~~~gi~~ 88 (174)
T 3dmn_A 62 DTTAIIGKSLAECEALTKALKARGEQV 88 (174)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTTTCCE
T ss_pred CcEEEEecCHHHHHHHHHHHHHcCCcc
Confidence 456788999999999999999887643
No 110
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=79.83 E-value=3.9 Score=23.79 Aligned_cols=31 Identities=6% Similarity=-0.018 Sum_probs=25.8
Q ss_pred ceEEEEecchh-hHHHHHHHHHhcCCceeeee
Q psy8719 2 DRALIFCRTKL-DCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 2 ~~aIVF~nTK~-~ad~La~~L~~~G~~~~~~~ 32 (33)
+.+||+|+.-. .+.+++..|+..|....|..
T Consensus 112 ~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L 143 (318)
T 3hzu_A 112 DTVVIYGDKSNWWAAYALWVFTLFGHADVRLL 143 (318)
T ss_dssp CEEEEECSGGGHHHHHHHHHHHHTTCSCEEEE
T ss_pred CeEEEECCCCCccHHHHHHHHHHcCCCceEEc
Confidence 36889999876 79999999999999877654
No 111
>1xxa_A ARGR, arginine repressor; complex (DNA binding protein/peptide); HET: ARG; 2.20A {Escherichia coli K12} SCOP: d.74.2.1 PDB: 1xxb_A* 1xxc_A
Probab=78.65 E-value=2.3 Score=20.99 Aligned_cols=23 Identities=9% Similarity=0.083 Sum_probs=20.4
Q ss_pred ceEEEEecchhhHHHHHHHHHhc
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSI 24 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~ 24 (33)
+..+|-|++.++++++.+.|++.
T Consensus 51 DTIlvi~r~~~~a~~l~~~i~~l 73 (78)
T 1xxa_A 51 DTIFTTPANGFTVKDLYEAILEL 73 (78)
T ss_dssp SEEEEEECTTCCHHHHHHHHHTT
T ss_pred CEEEEEECCHHHHHHHHHHHHHH
Confidence 46799999999999999999864
No 112
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=78.43 E-value=2.9 Score=24.27 Aligned_cols=27 Identities=44% Similarity=0.749 Sum_probs=21.7
Q ss_pred eEEEEec-------------chhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCR-------------TKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~n-------------TK~~ad~La~~L~~~G~~~~ 29 (33)
-||||+| |..|++.|.+.|++.|....
T Consensus 22 ~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~V~ 61 (259)
T 3sir_A 22 MALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVT 61 (259)
T ss_dssp EEEEEEECCC-----------CCHHHHHHHHHHHTTCEEE
T ss_pred EEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE
Confidence 4788888 44799999999999997654
No 113
>2zfz_A Arginine repressor; DNA binding protein, core, oligomeriza domain, alpha/beta topology, structural genomics; HET: ARG; 1.85A {Mycobacterium tuberculosis} PDB: 3bue_A 3cag_A*
Probab=78.36 E-value=2.5 Score=20.74 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=19.7
Q ss_pred ceEEEEecchhhHHHHHHHHHh
Q psy8719 2 DRALIFCRTKLDCDNLERYLNS 23 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~ 23 (33)
+..+|-|++.+++++|.+.|.+
T Consensus 56 DTIlvi~r~~~~a~~l~~~l~~ 77 (79)
T 2zfz_A 56 DTILVVAREPTTGAQLAGMFEN 77 (79)
T ss_dssp SEEEEEECTTCCHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHh
Confidence 4679999999999999999976
No 114
>2p5m_A Arginine repressor; alpha-beta, L-arginine binding domain, DNA binding protein; HET: ARG; 1.95A {Bacillus subtilis} SCOP: d.74.2.1
Probab=78.06 E-value=3 Score=20.62 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.7
Q ss_pred ceEEEEecchhhHHHHHHHHHh
Q psy8719 2 DRALIFCRTKLDCDNLERYLNS 23 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~ 23 (33)
+..+|-|++.++++++.+.|.+
T Consensus 60 DTIlvi~r~~~~a~~l~~~l~~ 81 (83)
T 2p5m_A 60 DTILIICRTPEDTEGVKNRLLE 81 (83)
T ss_dssp SEEEEECSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCHHHHHHHHHHHHH
Confidence 4679999999999999999975
No 115
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=77.62 E-value=3.9 Score=25.14 Aligned_cols=30 Identities=13% Similarity=0.127 Sum_probs=26.1
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
+..|++|++-..+...+..|++.|.. .|.+
T Consensus 542 ~~iv~~C~~g~rs~~a~~~l~~~G~~-v~~l 571 (588)
T 3ics_A 542 KDIYITCQLGMRGYVAARMLMEKGYK-VKNV 571 (588)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHTTCC-EEEE
T ss_pred CeEEEECCCCcHHHHHHHHHHHcCCc-EEEE
Confidence 35899999999999999999999988 6654
No 116
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=77.00 E-value=5 Score=22.32 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=22.6
Q ss_pred eEEEEecch-----------hhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTK-----------LDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK-----------~~ad~La~~L~~~G~~~~ 29 (33)
.|||+.|.+ .|++.|++.|++.|....
T Consensus 45 ~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~ 82 (178)
T 2h54_A 45 LALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD 82 (178)
T ss_dssp EEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEE
Confidence 489998864 899999999999987654
No 117
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=76.83 E-value=5.1 Score=22.33 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=24.6
Q ss_pred CceEEEEecch--------hhHHHHHHHHHhcCCceee
Q psy8719 1 MDRALIFCRTK--------LDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 1 ~~~aIVF~nTK--------~~ad~La~~L~~~G~~~~~ 30 (33)
|.++=|||..+ +.|.+|++.|.++|....|
T Consensus 1 m~~V~V~gss~~~~~~~~~~~A~~lg~~La~~g~~lV~ 38 (191)
T 1t35_A 1 MKTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVY 38 (191)
T ss_dssp CCEEEEECCSSCCSSTHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEEECCCCCCChHHHHHHHHHHHHHHHCCCEEEE
Confidence 45677899886 5799999999999987765
No 118
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=76.67 E-value=4.7 Score=23.63 Aligned_cols=28 Identities=32% Similarity=0.361 Sum_probs=23.1
Q ss_pred eEEEEecc--------------hhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRT--------------KLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nT--------------K~~ad~La~~L~~~G~~~~~ 30 (33)
-||||+|. ..|++.|.+.|++.|.....
T Consensus 23 ~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~ 64 (278)
T 3od5_A 23 IALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKC 64 (278)
T ss_dssp EEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 48999985 38999999999999976543
No 119
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=76.59 E-value=4.9 Score=22.36 Aligned_cols=31 Identities=10% Similarity=0.250 Sum_probs=25.2
Q ss_pred ceEEEEecchhhHHHHHHHHHh-cCCceeeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNS-IDRRLIYYF 32 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~-~G~~~~~~~ 32 (33)
+.+||+|++-..+...+..|.+ .|....|.+
T Consensus 227 ~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l 258 (277)
T 3aay_A 227 KETIAYCRIGERSSHTWFVLRELLGHQNVKNY 258 (277)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTTSCCSCEEEE
T ss_pred CCEEEEcCcHHHHHHHHHHHHHHcCCCcceee
Confidence 3579999999999999999985 898755543
No 120
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=76.46 E-value=4.6 Score=24.22 Aligned_cols=31 Identities=10% Similarity=0.284 Sum_probs=26.2
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
+.+|++|++=..+...+..|+..|....|.+
T Consensus 359 ~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~ 389 (423)
T 2wlr_A 359 QQVSFYCGTGWRASETFMYARAMGWKNVSVY 389 (423)
T ss_dssp SEEEEECSSSHHHHHHHHHHHHTTCSSEEEE
T ss_pred CcEEEECCcHHHHHHHHHHHHHcCCCCccee
Confidence 3578999999999999999999998755543
No 121
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=76.29 E-value=4.7 Score=22.34 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=23.8
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
+-|+.++.+.+++++++.|+++|.+..
T Consensus 7 ~~vlvtRp~~~~~~l~~~L~~~G~~~~ 33 (254)
T 4es6_A 7 WRLLLTRPDEECAALAASLGEAGVHSS 33 (254)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEeCChHHhHHHHHHHHHCCCcEE
Confidence 568889999999999999999998754
No 122
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=75.91 E-value=5 Score=24.29 Aligned_cols=29 Identities=17% Similarity=0.085 Sum_probs=25.2
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
+..||+|++-..+...+..|++.|. ..|.
T Consensus 525 ~~iv~~c~~g~rs~~a~~~l~~~G~-~v~~ 553 (565)
T 3ntd_A 525 KEIIIFSQVGLRGNVAYRQLVNNGY-RARN 553 (565)
T ss_dssp SEEEEECSSSHHHHHHHHHHHHTTC-CEEE
T ss_pred CeEEEEeCCchHHHHHHHHHHHcCC-CEEE
Confidence 3589999999999999999999998 5554
No 123
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=75.84 E-value=6.3 Score=21.92 Aligned_cols=30 Identities=3% Similarity=0.078 Sum_probs=23.9
Q ss_pred eEEEEecch-hhHHHHHHHHHhcCCceeeee
Q psy8719 3 RALIFCRTK-LDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 3 ~aIVF~nTK-~~ad~La~~L~~~G~~~~~~~ 32 (33)
.+||+|++- ..+.+++..|+..|....|..
T Consensus 79 ~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l 109 (277)
T 3aay_A 79 TVILYGGNNNWFAAYAYWYFKLYGHEKVKLL 109 (277)
T ss_dssp EEEEECSGGGHHHHHHHHHHHHTTCCSEEEE
T ss_pred eEEEECCCCCchHHHHHHHHHHcCCCcEEEe
Confidence 578899885 468899999999999766653
No 124
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=75.76 E-value=1.6 Score=20.85 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=16.9
Q ss_pred ecchhhHHHHHHHHHhcCCcee
Q psy8719 8 CRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~~~~ 29 (33)
|.|+.+|.++-+.|++.|..+.
T Consensus 15 c~~~~~~~~ak~~L~~~~i~~~ 36 (93)
T 1t1v_A 15 REIKSQQSEVTRILDGKRIQYQ 36 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCE
T ss_pred chhhHHHHHHHHHHHHCCCceE
Confidence 4456677999999999987654
No 125
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=74.92 E-value=4.9 Score=23.08 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=21.8
Q ss_pred eEEEEec--------------chhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCR--------------TKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~n--------------TK~~ad~La~~L~~~G~~~~ 29 (33)
-||||.| +..|++.|++.|++.|....
T Consensus 18 ~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V~ 58 (250)
T 2j32_A 18 LCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVR 58 (250)
T ss_dssp EEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 4788888 34599999999999987654
No 126
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=74.67 E-value=5.6 Score=21.47 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=21.9
Q ss_pred eEEEEec--------------chhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCR--------------TKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~n--------------TK~~ad~La~~L~~~G~~~~ 29 (33)
-||||.| |..|++.|.+.|++.|....
T Consensus 18 ~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~ 58 (146)
T 2dko_A 18 LCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVR 58 (146)
T ss_dssp EEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEE
Confidence 5788887 56689999999999887644
No 127
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=74.25 E-value=1.9 Score=22.97 Aligned_cols=24 Identities=8% Similarity=-0.028 Sum_probs=20.5
Q ss_pred EecchhhHHHHHHHHHhcCCceee
Q psy8719 7 FCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 7 F~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
+|.||.+|.++-..|++.|..+..
T Consensus 12 ~c~~kk~c~~aK~lL~~kgV~feE 35 (121)
T 1u6t_A 12 STAIKKKQQDVLGFLEANKIGFEE 35 (121)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CccchHHHHHHHHHHHHCCCceEE
Confidence 567899999999999999987643
No 128
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=74.22 E-value=5.6 Score=23.86 Aligned_cols=29 Identities=3% Similarity=0.112 Sum_probs=25.2
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
.+||+|++-..+..++..|+..|....+.
T Consensus 205 ~ivvyC~~G~~a~~~~~~L~~~G~~~v~~ 233 (423)
T 2wlr_A 205 TVILYGRDVYAAARVAQIMLYAGVKDVRL 233 (423)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHTCSCEEE
T ss_pred eEEEECCCchHHHHHHHHHHHcCCCCeEE
Confidence 58999999999999999999999865554
No 129
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=73.62 E-value=5 Score=24.93 Aligned_cols=31 Identities=3% Similarity=-0.051 Sum_probs=26.7
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
..+||+|+.-..+.+.+..|++.|....|+.
T Consensus 64 ~~iVvyc~~g~~s~~a~~~L~~~G~~~V~~L 94 (539)
T 1yt8_A 64 TPITVYDDGEGLAPVAAQRLHDLGYSDVALL 94 (539)
T ss_dssp SCEEEECSSSSHHHHHHHHHHHTTCSSEEEE
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCceEEe
Confidence 3689999998899999999999999877654
No 130
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=73.35 E-value=5.1 Score=24.16 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=25.8
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
+.+||+|++-..+...+..|+..|....+.
T Consensus 428 ~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~ 457 (474)
T 3tp9_A 428 GSVCVYCRTGGRSAIAASLLRAHGVGDVRN 457 (474)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCSSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEE
Confidence 358999999999999999999999875554
No 131
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=73.26 E-value=6.1 Score=22.33 Aligned_cols=28 Identities=7% Similarity=0.245 Sum_probs=22.9
Q ss_pred eEEEEecch-------hhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTK-------LDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK-------~~ad~La~~L~~~G~~~~~ 30 (33)
++=|||..+ +.|.+|++.|.++|....|
T Consensus 15 ~I~Vfg~s~~~~~~~~~~A~~lg~~la~~g~~lv~ 49 (189)
T 3sbx_A 15 TVAVYCAAAPTHPELLELAGAVGAAIAARGWTLVW 49 (189)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEE
Confidence 466899754 6789999999999988776
No 132
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=72.61 E-value=6.6 Score=23.02 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=23.7
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
-+|.+|...+.++++.+.|++.|....|
T Consensus 300 ~vial~~~~~~~~~~~~~l~~~g~~~~~ 327 (337)
T 2pg9_A 300 CGIALSFDAQSTKTLKNRWADLGIELLY 327 (337)
T ss_dssp EEEEEECSHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEE
Confidence 3578888888999999999999987654
No 133
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=71.81 E-value=6.2 Score=23.24 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=22.0
Q ss_pred eEEEEec--------------chhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCR--------------TKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~n--------------TK~~ad~La~~L~~~G~~~~~ 30 (33)
-||||+| |..|++.|.+.|++.|.....
T Consensus 46 ~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~ 87 (277)
T 4ehd_A 46 LCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRN 87 (277)
T ss_dssp EEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 4788865 456999999999999976543
No 134
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.78 E-value=2.5 Score=21.13 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=17.5
Q ss_pred ecchhhHHHHHHHHHhcCCceee
Q psy8719 8 CRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
|.+|++|+++-+.|++.|..+.+
T Consensus 21 C~~~~~~~~ak~~L~~~gi~y~~ 43 (111)
T 2ct6_A 21 VAIKKKQQDVVRFLEANKIEFEE 43 (111)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEE
T ss_pred cccchhHHHHHHHHHHcCCCEEE
Confidence 55566777999999999876543
No 135
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=71.74 E-value=2.9 Score=22.97 Aligned_cols=27 Identities=11% Similarity=0.194 Sum_probs=23.3
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
.-|+.++.+.+++++++.|+++|.+-.
T Consensus 2 ~~vlvtRp~~~~~~l~~~L~~~G~~~~ 28 (240)
T 3mw8_A 2 MKLLLTRPEGKNAAMASALDALAIPYL 28 (240)
T ss_dssp CCEEECSCTTSCHHHHHHHHHHTCCEE
T ss_pred CEEEEeCChHHhHHHHHHHHHCCCcEE
Confidence 347889999999999999999998754
No 136
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=71.37 E-value=8 Score=22.58 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=22.5
Q ss_pred eEEEEecc-------------hhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRT-------------KLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nT-------------K~~ad~La~~L~~~G~~~~ 29 (33)
-||||.|. ..|++.|++.|++.|....
T Consensus 34 ~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~ 73 (272)
T 1m72_A 34 MAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT 73 (272)
T ss_dssp EEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE
Confidence 47888874 8899999999999987654
No 137
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=71.37 E-value=4.7 Score=23.45 Aligned_cols=30 Identities=10% Similarity=0.287 Sum_probs=25.1
Q ss_pred eEEEEecchhhHHHHHHHHHh-cCCceeeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNS-IDRRLIYYF 32 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~-~G~~~~~~~ 32 (33)
.+|++|++=..+...+..|.+ .|....|.+
T Consensus 261 ~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~ 291 (318)
T 3hzu_A 261 QTVVYCRIGERSSHTWFVLTHLLGKADVRNY 291 (318)
T ss_dssp CCEEECSSSHHHHHHHHHHHHTSCCSSCEEC
T ss_pred cEEEEcCChHHHHHHHHHHHHHcCCCCeeEe
Confidence 579999999999999999997 898755543
No 138
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=71.28 E-value=6.6 Score=21.65 Aligned_cols=27 Identities=0% Similarity=0.054 Sum_probs=22.2
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
.-|+.++.+. ++.+++.|++.|.+..+
T Consensus 9 ~~vlvtr~~~-~~~l~~~L~~~G~~~~~ 35 (261)
T 1wcw_A 9 VRVAYAGLRR-KEAFKALAEKLGFTPLL 35 (261)
T ss_dssp CEEEECCSTT-HHHHHHHHHHTTCEEEE
T ss_pred CEEEEeCCCc-hHHHHHHHHHCCCcEEE
Confidence 4577788887 99999999999987654
No 139
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=71.05 E-value=3.3 Score=28.39 Aligned_cols=28 Identities=11% Similarity=0.007 Sum_probs=24.7
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
+++|.|.|+..+++|.+.|...|....|
T Consensus 387 rVli~~~s~~~~erL~~~L~e~gi~~~~ 414 (1151)
T 2eyq_A 387 PVVFSVESEGRREALGELLARIKIAPQR 414 (1151)
T ss_dssp CCCEEESSHHHHHHHHHHHGGGTCCCEE
T ss_pred cEEEEECCHHHHHHHHHHHHhcCCCcee
Confidence 5789999999999999999999986544
No 140
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=70.78 E-value=3.9 Score=22.25 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=21.6
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
-.|||+++++.+..|.+. +...++.|.
T Consensus 56 Glll~ak~~~~~~~l~~~--~~~v~K~Y~ 82 (189)
T 2oml_A 56 GLLVLTNNGALQARLTQP--GKRTGKIYY 82 (189)
T ss_dssp EEEEEESCHHHHHHHHST--TSCCCEEEE
T ss_pred eEEEEEcCHHHHHHHhCc--cCCCcEEEE
Confidence 468999999999988886 556777775
No 141
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=70.18 E-value=5.2 Score=20.13 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=15.5
Q ss_pred cchhhHHHHHHHHHhcCCc
Q psy8719 9 RTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 9 nTK~~ad~La~~L~~~G~~ 27 (33)
||+.-|+.|++.|.+.|.+
T Consensus 14 nT~~~A~~ia~~l~~~g~~ 32 (148)
T 3f6r_A 14 NTESIAQKLEELIAAGGHE 32 (148)
T ss_dssp HHHHHHHHHHHHHHTTTCE
T ss_pred hHHHHHHHHHHHHHhCCCe
Confidence 6788888888888887764
No 142
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=69.23 E-value=6.4 Score=20.32 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.0
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCc
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~ 27 (33)
++||.++|+.-++++.+.+++.+..
T Consensus 74 ~~lil~P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 74 RALVLTPTRELALQVASELTAVAPH 98 (207)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred cEEEEECCHHHHHHHHHHHHHHhhc
Confidence 6899999999999999999887543
No 143
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=69.08 E-value=4.3 Score=23.41 Aligned_cols=29 Identities=3% Similarity=-0.056 Sum_probs=24.7
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
.+|++|++=..+...+..|+..|....+.
T Consensus 256 ~iv~yC~sG~rs~~a~~~L~~~G~~~v~~ 284 (302)
T 3olh_A 256 PLVATCGSGVTACHVALGAYLCGKPDVPI 284 (302)
T ss_dssp CEEEECSSSSTTHHHHHHHHTTTCCCCCE
T ss_pred CEEEECCChHHHHHHHHHHHHcCCCCeeE
Confidence 57899999999999999999999865543
No 144
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=68.68 E-value=7 Score=23.39 Aligned_cols=27 Identities=11% Similarity=0.167 Sum_probs=22.2
Q ss_pred eEEEEecch------------hhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTK------------LDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK------------~~ad~La~~L~~~G~~~~ 29 (33)
-||||+|.+ .|++.|.+.|++.|....
T Consensus 63 ~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~ 101 (316)
T 2fp3_A 63 VLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIF 101 (316)
T ss_dssp EEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEE
T ss_pred EEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEE
Confidence 588988864 899999999999987643
No 145
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=68.64 E-value=10 Score=21.36 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=22.8
Q ss_pred eEEEEecch--------------hhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTK--------------LDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK--------------~~ad~La~~L~~~G~~~~~ 30 (33)
-||||+|.+ .++++|.+.|++.|....-
T Consensus 46 ~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~ 87 (179)
T 3p45_A 46 IALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKC 87 (179)
T ss_dssp EEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 589999863 6999999999999876543
No 146
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=68.57 E-value=6.8 Score=23.46 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=23.2
Q ss_pred EEEecchhhHHHHHHHHHhcCCceee
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
.||.||-..+++++..|++.|....+
T Consensus 123 ~v~~n~~~~~~~~~~~~~e~Gv~pE~ 148 (282)
T 2y7e_A 123 DIFINHPADIIRLAEAFKQYNVVPEV 148 (282)
T ss_dssp EEECCCHHHHHHHHHHHHHTTCEEEE
T ss_pred ccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 68999999999999999999987643
No 147
>1u69_A Hypothetical protein; structural genomics, MSCG, pseudomonas aeruginosa PAO1, HYPO protein, protein structure initiative (PSI); 1.60A {Pseudomonas aeruginosa} SCOP: d.32.1.7
Probab=68.28 E-value=8.5 Score=21.07 Aligned_cols=27 Identities=7% Similarity=-0.066 Sum_probs=22.4
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
+..|-|.+.+++|++.+.|.+.|++..
T Consensus 79 sl~v~~~d~~e~d~~~~~L~~~Gg~v~ 105 (163)
T 1u69_A 79 SFQVATDDQAETDRLWNAIVDNGGEES 105 (163)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTCEEC
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEE
Confidence 456788999999999999997787643
No 148
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=67.43 E-value=12 Score=20.72 Aligned_cols=27 Identities=7% Similarity=0.021 Sum_probs=22.3
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
.++.++..++.++++.+.|++.|....
T Consensus 261 ~v~~l~~~~~~~~~~~~~l~~~~~~~~ 287 (292)
T 2oi2_A 261 CIIALVTNLTHAQELAERLEEKGAVQT 287 (292)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCSEE
T ss_pred EEEEEecCchHHHHHHHHHHhcCccee
Confidence 567788887889999999999987553
No 149
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=67.42 E-value=9.6 Score=23.98 Aligned_cols=30 Identities=3% Similarity=0.160 Sum_probs=24.1
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
..||-|+++..|++|++.|+..-....+||
T Consensus 41 p~lvv~~~~~~A~~l~~~l~~~~~~~v~~f 70 (483)
T 3hjh_A 41 PVVLIAPDMQNALRLHDEISQFTDQMVMNL 70 (483)
T ss_dssp CEEEEESSHHHHHHHHHHHHHTCSSCEEEC
T ss_pred CEEEEeCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 579999999999999999997643336665
No 150
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=66.89 E-value=11 Score=21.33 Aligned_cols=28 Identities=7% Similarity=0.173 Sum_probs=22.7
Q ss_pred eEEEEecc-------hhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRT-------KLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nT-------K~~ad~La~~L~~~G~~~~~ 30 (33)
++=|||.. .+.|.+|++.|.++|....|
T Consensus 24 ~v~Vfggs~~~~~~~~~~A~~lg~~La~~g~~lV~ 58 (199)
T 3qua_A 24 AVCVYCASGPTHPELLELAAEVGSSIAARGWTLVS 58 (199)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 56789865 36789999999999988765
No 151
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=66.77 E-value=11 Score=22.65 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=22.7
Q ss_pred eEEEEecc-------------hhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRT-------------KLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nT-------------K~~ad~La~~L~~~G~~~~ 29 (33)
-||||.|. ..|++.|++.|++.|....
T Consensus 62 ~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~ 101 (310)
T 2nn3_C 62 MAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT 101 (310)
T ss_dssp EEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE
Confidence 48888874 8899999999999997654
No 152
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=65.99 E-value=7.4 Score=22.05 Aligned_cols=27 Identities=0% Similarity=0.085 Sum_probs=22.1
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
.-|+.++.+. ++.+++.|++.|.+...
T Consensus 34 ~~VlvtR~~~-~~~l~~~L~~~G~~v~~ 60 (286)
T 3d8t_A 34 MRIAYAGLRR-KEEFKALAEKLGFTPLL 60 (286)
T ss_dssp CEEEECCSSC-HHHHHHHHHHHTCEEEE
T ss_pred CEEEEeCCCc-hHHHHHHHHHCCCeEEE
Confidence 4567788887 99999999999987654
No 153
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=65.92 E-value=7.4 Score=23.16 Aligned_cols=26 Identities=8% Similarity=-0.045 Sum_probs=22.7
Q ss_pred EEEecchhhHHHHHHHHHhcCCceee
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
.||.||-...+++++.|++.|....+
T Consensus 118 ~v~~N~~~~~~~~~~~~~e~Gi~pE~ 143 (275)
T 3no5_A 118 RVYDNPPELVDWLAAEMKTYGIKPEV 143 (275)
T ss_dssp SEECCCHHHHHHHHHHHHHTTCEEEE
T ss_pred ccccCCHHHHHHHHHHHHHcCCeeEE
Confidence 48999999999999999999976543
No 154
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=65.61 E-value=14 Score=21.14 Aligned_cols=29 Identities=3% Similarity=0.005 Sum_probs=23.6
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
++++.-+..+.++++++.|++.|.+..++
T Consensus 33 ~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~ 61 (254)
T 4fn4_A 33 IVVAVELLEDRLNQIVQELRGMGKEVLGV 61 (254)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCcEEEE
Confidence 46777788889999999999998876543
No 155
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=65.31 E-value=11 Score=20.57 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=16.4
Q ss_pred chhhHHHHHHHHHhcCCcee
Q psy8719 10 TKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 10 TK~~ad~La~~L~~~G~~~~ 29 (33)
|..|++.|.+.|++.|....
T Consensus 53 t~~D~~~L~~~f~~LgF~V~ 72 (164)
T 1qtn_A 53 THLDAGALTTTFEELHFEIK 72 (164)
T ss_dssp HHHHHHHHHHHHHHTTCEEE
T ss_pred cHHHHHHHHHHHHHCCCEEE
Confidence 37899999999999887654
No 156
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=65.19 E-value=12 Score=19.34 Aligned_cols=28 Identities=11% Similarity=0.258 Sum_probs=17.0
Q ss_pred EEEE-e-cchhhHHHH----HHHHHhcCC--ceeee
Q psy8719 4 ALIF-C-RTKLDCDNL----ERYLNSIDR--RLIYY 31 (33)
Q Consensus 4 aIVF-~-nTK~~ad~L----a~~L~~~G~--~~~~~ 31 (33)
.||| | ++-..+... +..|++.|. ...|.
T Consensus 70 ~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~ 105 (152)
T 2j6p_A 70 LAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYV 105 (152)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEE
T ss_pred EEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEE
Confidence 5666 9 454444444 488888885 34553
No 157
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Probab=65.16 E-value=11 Score=19.40 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=20.1
Q ss_pred EEEec-chhhHHHHHHHHHhc----------CCceeee
Q psy8719 5 LIFCR-TKLDCDNLERYLNSI----------DRRLIYY 31 (33)
Q Consensus 5 IVF~n-TK~~ad~La~~L~~~----------G~~~~~~ 31 (33)
|++|+ +-..+...+..|++. |....|.
T Consensus 93 v~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~ 130 (161)
T 1c25_A 93 VFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYV 130 (161)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEE
T ss_pred EEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEE
Confidence 35698 878888899999865 7665554
No 158
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Probab=64.29 E-value=7.6 Score=23.51 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=23.7
Q ss_pred EEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 4 ALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 4 aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
-.||.||-...+++++.|++.|.+..+
T Consensus 145 d~v~~n~~~~i~~~~~~~~e~Gi~pE~ 171 (311)
T 3e02_A 145 DFILSNTFSQIERGMTELGASGTRFEF 171 (311)
T ss_dssp GCEECCCHHHHHHHHHHHHTTTCEEEE
T ss_pred CceecCCHHHHHHHHHHHHHcCCeEEE
Confidence 469999999999999999999987543
No 159
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=64.04 E-value=9 Score=20.49 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=22.0
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCC
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
.++||-+.|++-++++.+.+++.+.
T Consensus 93 ~~~lil~Pt~~L~~q~~~~~~~~~~ 117 (230)
T 2oxc_A 93 TQILILAPTREIAVQIHSVITAIGI 117 (230)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhc
Confidence 3789999999999999999988754
No 160
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha}
Probab=63.99 E-value=8.4 Score=23.53 Aligned_cols=27 Identities=7% Similarity=0.176 Sum_probs=23.8
Q ss_pred EEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 4 ALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 4 aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
-.||.||-..+++++..+++.|....+
T Consensus 159 ~~v~~n~~~~i~~~~~~~~e~Gv~pE~ 185 (316)
T 3c6c_A 159 EFVYLNTTRTLRAMARRFQELGIKPEL 185 (316)
T ss_dssp EEEECCCHHHHHHHHHHHHHHTCEEEE
T ss_pred ceeecCCHHHHHHHHHHHHHcCCeEEE
Confidence 578999999999999999999987543
No 161
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=63.93 E-value=7.6 Score=23.21 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=21.5
Q ss_pred eEEEEec--------------chhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCR--------------TKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~n--------------TK~~ad~La~~L~~~G~~~~ 29 (33)
-||||.| +..|++.|++.|++.|....
T Consensus 71 ~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF~V~ 111 (305)
T 1f1j_A 71 KCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVI 111 (305)
T ss_dssp EEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEEEE
T ss_pred EEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCCEEE
Confidence 4788887 45799999999999886543
No 162
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=63.79 E-value=4.1 Score=20.32 Aligned_cols=19 Identities=5% Similarity=0.029 Sum_probs=16.6
Q ss_pred cchhhHHHHHHHHHhcCCc
Q psy8719 9 RTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 9 nTK~~ad~La~~L~~~G~~ 27 (33)
||+.-|+.+++.|.+.|..
T Consensus 11 nT~~iA~~ia~~l~~~g~~ 29 (138)
T 5nul_A 11 NTEKMAELIAKGIIESGKD 29 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHCCCe
Confidence 7899999999999988865
No 163
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=63.69 E-value=14 Score=21.07 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=23.1
Q ss_pred CceEEEEecch--------hhHHHHHHHHHhcCCceee
Q psy8719 1 MDRALIFCRTK--------LDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 1 ~~~aIVF~nTK--------~~ad~La~~L~~~G~~~~~ 30 (33)
|.++=|||..+ +.|.+|++.|.++|....|
T Consensus 9 m~~V~V~ggsr~~~~~~~~~~A~~lg~~LA~~g~~lV~ 46 (216)
T 1ydh_A 9 FRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVY 46 (216)
T ss_dssp CSEEEEECCSCCCSSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEE
Confidence 34677898433 4789999999999988765
No 164
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=63.56 E-value=8.8 Score=23.84 Aligned_cols=31 Identities=10% Similarity=0.291 Sum_probs=26.2
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
+.+||+|.+-..+...+..|++.|....|.+
T Consensus 431 ~~ivv~C~sG~rs~~aa~~L~~~G~~~v~~l 461 (539)
T 1yt8_A 431 ERYVLTCGSSLLARFAVAEVQALSGKPVFLL 461 (539)
T ss_dssp SEEEEECSSSHHHHHHHHHHHHHHCSCEEEE
T ss_pred CeEEEEeCCChHHHHHHHHHHHcCCCCEEEe
Confidence 3579999999999999999999998765543
No 165
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=63.19 E-value=9.4 Score=19.71 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=21.1
Q ss_pred eEEEEecchhhHHHHHHHHHhcCC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
++||-+.|+.-++++.+.+++.+.
T Consensus 73 ~~lil~Pt~~L~~q~~~~~~~~~~ 96 (206)
T 1vec_A 73 QAMVIVPTRELALQVSQICIQVSK 96 (206)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHh
Confidence 699999999999999999887653
No 166
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=62.94 E-value=9.3 Score=20.35 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=21.7
Q ss_pred eEEEEecchhhHHHHHHHHHhcCC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
++||-+.|++-++++.+.+++.+.
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~ 122 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGK 122 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTT
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhC
Confidence 689999999999999999988764
No 167
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=62.79 E-value=9.5 Score=20.56 Aligned_cols=24 Identities=13% Similarity=0.317 Sum_probs=21.6
Q ss_pred eEEEEecchhhHHHHHHHHHhcCC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
++||-+.|++-++.+.+.+++.+.
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~ 123 (237)
T 3bor_A 100 QALVLAPTRELAQQIQKVILALGD 123 (237)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTT
T ss_pred eEEEEECcHHHHHHHHHHHHHHhh
Confidence 799999999999999999988754
No 168
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=62.77 E-value=8.2 Score=23.13 Aligned_cols=26 Identities=12% Similarity=-0.074 Sum_probs=22.9
Q ss_pred EEEecchhhHHHHHHHHHhcCCceee
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
.||.||-..++++++.|++.|....+
T Consensus 122 ~v~~n~~~~~~~~~~~~~e~Gv~pE~ 147 (284)
T 3chv_A 122 RVYENPPDLVDWLAAQMRSYRVTPEI 147 (284)
T ss_dssp SEECCCHHHHHHHHHHHHHHTCEEEE
T ss_pred ccccCCHHHHHHHHHHHHHcCCEEEE
Confidence 48999999999999999999987543
No 169
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=62.52 E-value=12 Score=18.30 Aligned_cols=28 Identities=4% Similarity=-0.018 Sum_probs=21.0
Q ss_pred eEEEEecchhhH---------HHHHHHHHhcCCceeee
Q psy8719 3 RALIFCRTKLDC---------DNLERYLNSIDRRLIYY 31 (33)
Q Consensus 3 ~aIVF~nTK~~a---------d~La~~L~~~G~~~~~~ 31 (33)
.+||+|++-..+ ..+++.|...|. ..|.
T Consensus 85 ~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~-~v~~ 121 (142)
T 2ouc_A 85 EIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLV 121 (142)
T ss_dssp CEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTC-CCEE
T ss_pred cEEEEECCCCchhhcCcccHHHHHHHHHHHcCC-cEEE
Confidence 578899887664 457889999998 5554
No 170
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=62.45 E-value=9.2 Score=20.08 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=20.8
Q ss_pred eEEEEecchhhHHHHHHHHHhcC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G 25 (33)
++||-|.|++-++++++.+++.+
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~ 106 (220)
T 1t6n_A 84 SVLVMCHTRELAFQISKEYERFS 106 (220)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCHHHHHHHHHHHHHHH
Confidence 79999999999999999988764
No 171
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=62.24 E-value=13 Score=23.85 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=24.8
Q ss_pred eEEEEecchhhHHHHHHHHHhc-CCceeeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSI-DRRLIYYF 32 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~-G~~~~~~~ 32 (33)
.+||-++++..|.+|++.|+.. +..-.+||
T Consensus 55 ~~lvv~~~~~~A~ql~~el~~~~~~~~V~~f 85 (664)
T 1c4o_A 55 PALVLAPNKILAAQLAAEFRELFPENAVEYF 85 (664)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHCTTSEEEEC
T ss_pred CEEEEecCHHHHHHHHHHHHHHCCCCeEEEc
Confidence 5899999999999999999988 34455555
No 172
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=61.96 E-value=5.9 Score=16.47 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHhcCCc
Q psy8719 12 LDCDNLERYLNSIDRR 27 (33)
Q Consensus 12 ~~ad~La~~L~~~G~~ 27 (33)
+-+|+|++.|+++.+.
T Consensus 8 dfadelakllrqa~g~ 23 (26)
T 1sn9_A 8 DFADELAKLLRQAXGX 23 (26)
T ss_dssp CHHHHHHHHHHHHTC-
T ss_pred chHHHHHHHHHHhhCc
Confidence 4589999999988764
No 173
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=61.75 E-value=13 Score=23.86 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=24.9
Q ss_pred eEEEEecchhhHHHHHHHHHhc-CCceeeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSI-DRRLIYYF 32 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~-G~~~~~~~ 32 (33)
.+||-++++..|.+|++.|+.. +..-.+||
T Consensus 59 ~~lvv~~~~~~A~~l~~el~~~~~~~~v~~f 89 (661)
T 2d7d_A 59 PTLVIAHNKTLAGQLYSEFKEFFPNNAVEYF 89 (661)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEECCHHHHHHHHHHHHHHcCCCcEEEc
Confidence 5799999999999999999988 44455555
No 174
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=61.73 E-value=7.2 Score=19.74 Aligned_cols=20 Identities=10% Similarity=0.062 Sum_probs=17.1
Q ss_pred ecchhhHHHHHHHHHhcCCc
Q psy8719 8 CRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~~ 27 (33)
-||+.-|+.|++.|.+.|.+
T Consensus 13 GnT~~~A~~ia~~l~~~g~~ 32 (147)
T 2hna_A 13 GGAEYVAEHLAEKLEEAGFT 32 (147)
T ss_dssp CCCHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHCCCc
Confidence 38899999999999987765
No 175
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=61.19 E-value=11 Score=19.73 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=21.1
Q ss_pred eEEEEecchhhHHHHHHHHHhcCC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
++||.+.|+.-++++.+.+++.+.
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~ 107 (224)
T 1qde_A 84 QALMLAPTRELALQIQKVVMALAF 107 (224)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCHHHHHHHHHHHHHHhc
Confidence 799999999999999999887643
No 176
>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}
Probab=60.72 E-value=9.7 Score=23.05 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=23.5
Q ss_pred EEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 4 ALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 4 aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
-.||.||-...+++++.|++.|.+..+
T Consensus 145 ~~v~~n~~~~i~~~~~~~~e~Gi~pE~ 171 (311)
T 3e49_A 145 DLVFKNTFADIEFILKTCGGNGTRFEF 171 (311)
T ss_dssp GCEECCCHHHHHHHHHHHHTTTCEEEE
T ss_pred CceecCCHHHHHHHHHHHHHcCCeeEE
Confidence 369999999999999999999987543
No 177
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=60.56 E-value=3.7 Score=25.51 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=19.7
Q ss_pred ceEEEEecchhhHHHHHHHHHh
Q psy8719 2 DRALIFCRTKLDCDNLERYLNS 23 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~ 23 (33)
.++|||++++...+.+++.|..
T Consensus 385 g~~lvff~S~~~~~~v~~~l~~ 406 (540)
T 2vl7_A 385 KSVLVFFPSYEMLESVRIHLSG 406 (540)
T ss_dssp SEEEEEESCHHHHHHHHTTCTT
T ss_pred CCEEEEeCCHHHHHHHHHHhcc
Confidence 5799999999999999988864
No 178
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=60.47 E-value=7.6 Score=21.76 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=21.3
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
-.|||+++++.+..|.+. ....++.|.
T Consensus 84 GllllAk~~~~~~~L~~~--~~~v~K~Y~ 110 (217)
T 2olw_A 84 GLLVLTNNGALQARLTQP--GKRTGKIYY 110 (217)
T ss_dssp EEEEEESCHHHHHHHHCT--TCCCCEEEE
T ss_pred eEEEEEcCHHHHHHHHcc--cccCCEEEE
Confidence 478999999999888875 456777775
No 179
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=60.17 E-value=11 Score=20.55 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=23.0
Q ss_pred CceEEEEecch--------hhHHHHHHHHHhcCCceee
Q psy8719 1 MDRALIFCRTK--------LDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 1 ~~~aIVF~nTK--------~~ad~La~~L~~~G~~~~~ 30 (33)
|.++=|||..+ +.|.+|++.|.++|....|
T Consensus 1 m~~V~V~gs~~~~~~~~~~~~A~~lg~~La~~g~~lV~ 38 (171)
T 1weh_A 1 MRLLAVFVSSRLSPEDPLYARWVRYGEVLAEEGFGLAC 38 (171)
T ss_dssp CEEEEEECCSSCCTTSHHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEe
Confidence 34667888766 3789999999999877665
No 180
>2v3s_A Serine/threonine-protein kinase OSR1; ATP-binding, magnesium, metal-binding, nucleotide-binding, phosphorylation, polymorphism, transferase; 1.70A {Homo sapiens}
Probab=59.20 E-value=5.7 Score=21.11 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=18.4
Q ss_pred EEecchhhHHHHHHHHHhcCC
Q psy8719 6 IFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~ 26 (33)
=|+.-++.++.+|.+|..+|-
T Consensus 22 eF~~g~DTaegiA~ELv~AgL 42 (96)
T 2v3s_A 22 EFTPGRDTAEGVSQELISAGL 42 (96)
T ss_dssp EECTTTCCHHHHHHHHHHTTS
T ss_pred EeecCCCcHHHHHHHHHHCCC
Confidence 388889999999999998874
No 181
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=58.93 E-value=7.9 Score=23.23 Aligned_cols=29 Identities=7% Similarity=0.051 Sum_probs=24.5
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
.+|++|++=..+...+..|+..|....+.
T Consensus 248 ~ivvyC~sG~rs~~a~~~L~~~G~~~v~~ 276 (373)
T 1okg_A 248 SFVFSCGSGVTACINIALVHHLGLGHPYL 276 (373)
T ss_dssp TSEEECSSSSTHHHHHHHHHHTTSCCCEE
T ss_pred CEEEECCchHHHHHHHHHHHHcCCCCeeE
Confidence 47999999999999999999999865543
No 182
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=58.86 E-value=19 Score=19.76 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=21.8
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCc
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~ 27 (33)
.++||+|.|+.-++++.+.+.+.|..
T Consensus 134 ~~~liv~P~~~L~~q~~~~~~~~~~~ 159 (237)
T 2fz4_A 134 TPTLIVVPTLALAEQWKERLGIFGEE 159 (237)
T ss_dssp SCEEEEESSHHHHHHHHHHHGGGCGG
T ss_pred CCEEEEeCCHHHHHHHHHHHHhCCCC
Confidence 47899999999999999999875543
No 183
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=58.73 E-value=7.5 Score=21.07 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=18.4
Q ss_pred ceEEEEecchhhHHHHHHHHH
Q psy8719 2 DRALIFCRTKLDCDNLERYLN 22 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~ 22 (33)
.+++|.|..++.++.|.+.|=
T Consensus 40 ~rv~V~~~d~~~a~~LD~~LW 60 (150)
T 3sxu_A 40 KRVLIACEDEKQAYRLDEALW 60 (150)
T ss_dssp CCEEEECSSHHHHHHHHHHTT
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 378999999999999998873
No 184
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=58.69 E-value=12 Score=20.00 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=21.4
Q ss_pred eEEEEecchhhHHHHHHHHHhcCC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
++||-+.|++-++.+.+.+++.+.
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~ 123 (245)
T 3dkp_A 100 RALIISPTRELASQIHRELIKISE 123 (245)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTT
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhc
Confidence 689999999999999999988654
No 185
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=58.60 E-value=24 Score=20.26 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=23.5
Q ss_pred CceEEEEecch-------hhHHHHHHHHHhcCCceeeeeC
Q psy8719 1 MDRALIFCRTK-------LDCDNLERYLNSIDRRLIYYFT 33 (33)
Q Consensus 1 ~~~aIVF~nTK-------~~ad~La~~L~~~G~~~~~~~~ 33 (33)
|.+++|+.|-+ +..+++...|+++|.+...+.|
T Consensus 8 m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t 47 (304)
T 3s40_A 8 FEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHT 47 (304)
T ss_dssp CSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEEC
T ss_pred CCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEc
Confidence 45788888874 3456778888888887766543
No 186
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=58.36 E-value=17 Score=19.62 Aligned_cols=28 Identities=11% Similarity=-0.047 Sum_probs=22.0
Q ss_pred EEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
-|-++.......++++|.+.|++.+-++
T Consensus 106 ~V~~D~~~~g~~a~~~L~~~G~~~I~~i 133 (288)
T 3gv0_A 106 FHDFDNEAYAYEAVERLAQCGRKRIAVI 133 (288)
T ss_dssp EEEECHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCeEEEE
Confidence 4566777788888999999998877664
No 187
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=58.26 E-value=9 Score=18.67 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=16.3
Q ss_pred cchhhHHHHHHHHHhcCCce
Q psy8719 9 RTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 9 nTK~~ad~La~~L~~~G~~~ 28 (33)
||+.-|+.+++.|.+.|.+.
T Consensus 12 nT~~~a~~i~~~l~~~g~~v 31 (137)
T 2fz5_A 12 NTEAMANEIEAAVKAAGADV 31 (137)
T ss_dssp HHHHHHHHHHHHHHHTTCCE
T ss_pred hHHHHHHHHHHHHHhCCCeE
Confidence 68888888999998887654
No 188
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=58.11 E-value=8.8 Score=18.17 Aligned_cols=18 Identities=6% Similarity=-0.090 Sum_probs=12.9
Q ss_pred chhhHHHHHHHHHhcCCc
Q psy8719 10 TKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 10 TK~~ad~La~~L~~~G~~ 27 (33)
+++.|+++.+.|...|..
T Consensus 19 ~~~~A~~l~~~L~~~G~~ 36 (81)
T 1uta_A 19 GAEQAETVRAQLAFEGFD 36 (81)
T ss_dssp CHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhCCCC
Confidence 467778888888777643
No 189
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=58.10 E-value=10 Score=20.31 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.0
Q ss_pred ceEEEEecchhhHHHHHHHHHhc
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSI 24 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~ 24 (33)
++.+|.|++.++-+++-+.|+++
T Consensus 102 ~~i~v~~~s~eE~~~Wl~~L~~~ 124 (132)
T 1v61_A 102 ERIVVHCNNNQDFQEWMEQLNRL 124 (132)
T ss_dssp CEEEECCCCSHHHHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHH
Confidence 57889999999999999988764
No 190
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=57.65 E-value=8.1 Score=18.01 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=14.6
Q ss_pred cchhhHHHHHHHHHhcCC
Q psy8719 9 RTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 9 nTK~~ad~La~~L~~~G~ 26 (33)
.++.+|+.+.+.|++.|.
T Consensus 54 ~~~~~A~~~~~~L~~~g~ 71 (79)
T 1x60_A 54 SSKDNADTLAARAKNAGF 71 (79)
T ss_dssp SSHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 578888888888888775
No 191
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=57.44 E-value=22 Score=19.91 Aligned_cols=27 Identities=7% Similarity=0.142 Sum_probs=22.0
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
.++.++..++.++++.+.|++.|....
T Consensus 275 ~v~~l~~~~~~~~~~~~~l~~~~~~~~ 301 (308)
T 2x7i_A 275 SMLLLAKDLPTAKNIVKAVEKAGAAHT 301 (308)
T ss_dssp SEEEEESSHHHHHHHHHHHHHTTCSEE
T ss_pred EEEEEeCChhHHHHHHHHHHhCCCceE
Confidence 567788887889999999999986543
No 192
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}
Probab=57.40 E-value=18 Score=19.92 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=21.2
Q ss_pred eEEEEec-chhhHHHHHHHHHhcCCceeee
Q psy8719 3 RALIFCR-TKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 3 ~aIVF~n-TK~~ad~La~~L~~~G~~~~~~ 31 (33)
.||.|++ |++..+.|++.|++. .-..||
T Consensus 94 ~aIYfv~Pt~enI~~i~~D~~~~-~Y~~y~ 122 (159)
T 1y9j_A 94 PAVYFVMPTEENIDRLCQDLRNQ-LYESYY 122 (159)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHT-CBSEEE
T ss_pred CEEEEecCCHHHHHHHHHHhhhc-ccCeEE
Confidence 5788885 999999999999864 444443
No 193
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=56.97 E-value=13 Score=19.66 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=20.6
Q ss_pred eEEEEecchhhHHHHHHHHHhcC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G 25 (33)
++||.+.|++-++++.+.+++.+
T Consensus 96 ~~lil~Pt~~L~~q~~~~~~~~~ 118 (228)
T 3iuy_A 96 GMLVLTPTRELALHVEAECSKYS 118 (228)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHC
T ss_pred cEEEEeCCHHHHHHHHHHHHHhc
Confidence 58999999999999999998863
No 194
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=56.86 E-value=8.8 Score=20.73 Aligned_cols=24 Identities=13% Similarity=0.054 Sum_probs=21.0
Q ss_pred eEEEEecchhhHHHHHHHHHhcCC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
++||-|.|++-++++.+.+++.+.
T Consensus 102 ~~lil~Pt~~L~~q~~~~~~~~~~ 125 (253)
T 1wrb_A 102 KCLILAPTRELAIQILSESQKFSL 125 (253)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCHHHHHHHHHHHHHHhc
Confidence 799999999999999999887643
No 195
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=56.84 E-value=12 Score=21.28 Aligned_cols=24 Identities=8% Similarity=0.080 Sum_probs=21.3
Q ss_pred eEEEEecchhhHHHHHHHHHhcCC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
++||-+.|++-|..+.+.+++.+.
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~ 187 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGK 187 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTT
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHh
Confidence 699999999999999998887664
No 196
>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus}
Probab=56.57 E-value=12 Score=22.71 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.5
Q ss_pred EEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 4 ALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 4 aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
-.||.||-...+++++.++++|....+
T Consensus 147 ~~v~~N~~~~i~~~~~~~~e~Gi~pE~ 173 (314)
T 3lot_A 147 DIVFRNTFKDLEALSRIFKENDTKPEL 173 (314)
T ss_dssp GCEECCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CceecCCHHHHHHHHHHHHHcCCEEEE
Confidence 359999999999999999999987543
No 197
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=56.41 E-value=15 Score=20.34 Aligned_cols=28 Identities=18% Similarity=0.074 Sum_probs=22.2
Q ss_pred ceEEEEecchhh--HHHHHHHHHhcCCcee
Q psy8719 2 DRALIFCRTKLD--CDNLERYLNSIDRRLI 29 (33)
Q Consensus 2 ~~aIVF~nTK~~--ad~La~~L~~~G~~~~ 29 (33)
+.+|||+|.-.+ +-++|..++++|...+
T Consensus 79 D~vii~S~Sg~n~~~ie~A~~ake~G~~vI 108 (170)
T 3jx9_A 79 DRVLIFTPDTERSDLLASLARYDAWHTPYS 108 (170)
T ss_dssp CEEEEEESCSCCHHHHHHHHHHHHHTCCEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCCCcEE
Confidence 578999987554 6788999999998764
No 198
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=56.27 E-value=14 Score=20.67 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=20.8
Q ss_pred eEEEEec--------------chhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCR--------------TKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~n--------------TK~~ad~La~~L~~~G~~~~ 29 (33)
-||||.| |..|++.|.+.|++.|....
T Consensus 46 ~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V~ 86 (173)
T 2ql9_A 46 KCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVI 86 (173)
T ss_dssp EEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEEE
T ss_pred EEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE
Confidence 4788876 45789999999998886543
No 199
>2a4x_A Mitomycin-binding protein; ALFA/beta protein, mitomycin C-binding protein, bleomycin A2, antimicrobial protein; HET: BLM; 1.40A {Streptomyces caespitosus} SCOP: d.32.1.2 PDB: 2a4w_A* 1kmz_A 1kll_A*
Probab=55.97 E-value=16 Score=17.59 Aligned_cols=21 Identities=10% Similarity=-0.141 Sum_probs=17.8
Q ss_pred ecchhhHHHHHHHHHhcCCce
Q psy8719 8 CRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~~~ 28 (33)
+.++++.+.+.+.|.+.|...
T Consensus 79 v~~~~dv~~~~~~l~~~G~~~ 99 (138)
T 2a4x_A 79 FPDTASVDKKYAELVDAGYEG 99 (138)
T ss_dssp CSSHHHHHHHHHHHHHTTCCE
T ss_pred eCCHHHHHHHHHHHHHCCCce
Confidence 457889999999999999754
No 200
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=55.95 E-value=15 Score=20.98 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=22.9
Q ss_pred ceEEEEecchh--------hHHHHHHHHHhcCCceee
Q psy8719 2 DRALIFCRTKL--------DCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 2 ~~aIVF~nTK~--------~ad~La~~L~~~G~~~~~ 30 (33)
.++-|||..+. .|.+|++.|.++|....|
T Consensus 38 ~~VaV~Gss~~~~~~~~~~~A~~lg~~La~~g~~lVs 74 (217)
T 1wek_A 38 PLVSVFGSARFGEGHPAYEAGYRLGRALAEAGFGVVT 74 (217)
T ss_dssp CEEEEECCSSCCTTSHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEe
Confidence 35678887654 489999999999987765
No 201
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=55.90 E-value=20 Score=18.53 Aligned_cols=25 Identities=4% Similarity=0.048 Sum_probs=20.6
Q ss_pred eEEEEecchh---------hHHHHHHHHHhcCCc
Q psy8719 3 RALIFCRTKL---------DCDNLERYLNSIDRR 27 (33)
Q Consensus 3 ~aIVF~nTK~---------~ad~La~~L~~~G~~ 27 (33)
.+||+|+.-. .+..++..|.+.|..
T Consensus 95 ~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~ 128 (158)
T 3tg1_B 95 EIIVYDENTNEPSRVMPSQPLHIVLESLKREGKE 128 (158)
T ss_dssp CEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCC
T ss_pred eEEEEECCCCcccccCcchHHHHHHHHHHhCCCc
Confidence 5788998873 588899999999984
No 202
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=55.80 E-value=14 Score=19.52 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=20.3
Q ss_pred eEEEEecchhhHHHHHHHHHhcC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G 25 (33)
++||-+.|++-++++.+.+++.+
T Consensus 74 ~~lil~Pt~~L~~q~~~~~~~~~ 96 (219)
T 1q0u_A 74 QAVITAPTRELATQIYHETLKIT 96 (219)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHH
T ss_pred eEEEEcCcHHHHHHHHHHHHHHh
Confidence 78999999999999999887754
No 203
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=55.63 E-value=17 Score=19.79 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=19.6
Q ss_pred ceEEEEecchhhHHHHHHHHHh
Q psy8719 2 DRALIFCRTKLDCDNLERYLNS 23 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~ 23 (33)
+.++|-|++..+++.|.+.|.+
T Consensus 126 DTIlvi~r~~~~a~~l~~~l~~ 147 (149)
T 1b4a_A 126 DTCLIICRTPKDAKKVSNQLLS 147 (149)
T ss_dssp SEEEEEESSHHHHHHHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHHHHH
Confidence 4678999999999999999875
No 204
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=55.46 E-value=18 Score=19.27 Aligned_cols=28 Identities=7% Similarity=-0.051 Sum_probs=22.8
Q ss_pred EEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
-|-++..+....++++|.+.|++.+-++
T Consensus 97 ~V~~D~~~~g~~a~~~L~~~G~~~i~~i 124 (280)
T 3gyb_A 97 SVANDDFRGAEIATKHLIDLGHTHIAHL 124 (280)
T ss_dssp EEEECHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEechHHHHHHHHHHHHHCCCCeEEEE
Confidence 3667778888999999999999887664
No 205
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=54.89 E-value=20 Score=18.88 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=20.8
Q ss_pred EEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
|-++..+....++++|.+.|++.+-++
T Consensus 95 V~~d~~~~~~~a~~~L~~~G~~~I~~i 121 (255)
T 1byk_A 95 VCYDDEGAIKILMQRLYDQGHRNISYL 121 (255)
T ss_dssp EEECHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEccHHHHHHHHHHHHHcCCCeEEEE
Confidence 455667778889999999998877654
No 206
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=54.79 E-value=23 Score=20.55 Aligned_cols=25 Identities=8% Similarity=0.147 Sum_probs=20.9
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCc
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~ 27 (33)
.++.++..++.++++++.|++.|..
T Consensus 260 tvfal~~~~~~a~~~~~~l~~~g~~ 284 (306)
T 3pyf_A 260 TCAFLCTSASSAIDVGAQLSGAGVC 284 (306)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTSS
T ss_pred hheEEeCCHHHHHHHHHHHHhcCCc
Confidence 3567788888999999999998864
No 207
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=54.28 E-value=21 Score=18.45 Aligned_cols=20 Identities=10% Similarity=-0.087 Sum_probs=16.0
Q ss_pred cchhhHHHHHHHHHhcCCce
Q psy8719 9 RTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 9 nTK~~ad~La~~L~~~G~~~ 28 (33)
||+.-++.+++.|.+.|.+.
T Consensus 18 ~T~~la~~i~~~l~~~g~~v 37 (200)
T 2a5l_A 18 ATAEMARQIARGVEQGGFEA 37 (200)
T ss_dssp HHHHHHHHHHHHHHHTTCEE
T ss_pred hHHHHHHHHHHHHhhCCCEE
Confidence 67888888888998888654
No 208
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=54.10 E-value=16 Score=19.23 Aligned_cols=28 Identities=18% Similarity=0.095 Sum_probs=21.9
Q ss_pred EEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
-|-++.......++++|.+.|++.+-++
T Consensus 99 ~V~~d~~~~~~~a~~~L~~~G~~~i~~i 126 (272)
T 3o74_A 99 SVISDDRDASRQLAASLLSSAPRSIALI 126 (272)
T ss_dssp EEEECHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEEEchHHHHHHHHHHHHHCCCcEEEEE
Confidence 3556777788889999999998877654
No 209
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=53.82 E-value=17 Score=21.01 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=21.6
Q ss_pred eEEEEecc--------------hhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRT--------------KLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nT--------------K~~ad~La~~L~~~G~~~~ 29 (33)
-||||.|. ..|++.|.+.|++.|....
T Consensus 23 ~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~ 63 (277)
T 1nw9_B 23 HCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVE 63 (277)
T ss_dssp EEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEE
T ss_pred EEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE
Confidence 57888876 3599999999999986643
No 210
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=53.76 E-value=28 Score=20.17 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=21.3
Q ss_pred CceEEEEecchh-----hHHHHHHHHHhcCCcee
Q psy8719 1 MDRALIFCRTKL-----DCDNLERYLNSIDRRLI 29 (33)
Q Consensus 1 ~~~aIVF~nTK~-----~ad~La~~L~~~G~~~~ 29 (33)
|.+++|+.|... .++++.++|+++|.+..
T Consensus 4 m~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~ 37 (307)
T 1u0t_A 4 HRSVLLVVHTGRDEATETARRVEKVLGDNKIALR 37 (307)
T ss_dssp -CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEE
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 357888888533 37889999999988643
No 211
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=53.67 E-value=20 Score=17.83 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=16.0
Q ss_pred cchhhHHHHHHHHHhcCCce
Q psy8719 9 RTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 9 nTK~~ad~La~~L~~~G~~~ 28 (33)
||+.-|+.+++.|.+.|.+.
T Consensus 13 nt~~~a~~i~~~l~~~g~~v 32 (147)
T 1f4p_A 13 NTEYTAETIARELADAGYEV 32 (147)
T ss_dssp HHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHhcCCee
Confidence 77888888888888877653
No 212
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=53.45 E-value=22 Score=20.60 Aligned_cols=32 Identities=16% Similarity=0.016 Sum_probs=22.1
Q ss_pred CceEEEEecchhh-------HHHHHHHHHhcCCceeeee
Q psy8719 1 MDRALIFCRTKLD-------CDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 1 ~~~aIVF~nTK~~-------ad~La~~L~~~G~~~~~~~ 32 (33)
|.+++|+.|-+.. .+++.+.|+++|.+...+.
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~ 62 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYA 62 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEE
Confidence 3567888886543 4678888888887665443
No 213
>3bqx_A Glyoxalase-related enzyme; VOC superfamily, PSI-2, STRU genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.40A {Fulvimarina pelagi}
Probab=53.37 E-value=19 Score=17.68 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=19.5
Q ss_pred EEE-ecchhhHHHHHHHHHhcCCce
Q psy8719 5 LIF-CRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 5 IVF-~nTK~~ad~La~~L~~~G~~~ 28 (33)
|.| +.+.++.+.+.+.|.+.|...
T Consensus 73 l~f~v~~~~dv~~~~~~l~~~G~~~ 97 (150)
T 3bqx_A 73 LAHNVRAETEVAPLMERLVAAGGQL 97 (150)
T ss_dssp EEEECSSGGGHHHHHHHHHHTTCEE
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCEE
Confidence 445 458899999999999998764
No 214
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=53.19 E-value=21 Score=21.17 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=21.5
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCc
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~ 27 (33)
-+|++|...+.++++.+.|++.|..
T Consensus 321 ~vial~~~~~~~~~l~~~l~~~g~~ 345 (365)
T 3k17_A 321 CGIAFSKTKELAEKLVNEWEKLGIK 345 (365)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTCE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCE
Confidence 4678888888999999999998865
No 215
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=53.11 E-value=21 Score=18.55 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=18.9
Q ss_pred eEEEEec-chhhHHHHHHHH--------HhcCCceeeee
Q psy8719 3 RALIFCR-TKLDCDNLERYL--------NSIDRRLIYYF 32 (33)
Q Consensus 3 ~aIVF~n-TK~~ad~La~~L--------~~~G~~~~~~~ 32 (33)
.+||+|+ +-......+..| +..|....|++
T Consensus 87 ~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L 125 (152)
T 1t3k_A 87 TLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMIL 125 (152)
T ss_dssp EEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEE
T ss_pred EEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 5788898 655555555555 34787666653
No 216
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=52.62 E-value=15 Score=18.77 Aligned_cols=23 Identities=4% Similarity=0.283 Sum_probs=18.1
Q ss_pred ceEEEEecchhhHHH-HHHHHHhc
Q psy8719 2 DRALIFCRTKLDCDN-LERYLNSI 24 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~-La~~L~~~ 24 (33)
.++||.|+|+.-+++ +.+.+++.
T Consensus 83 ~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 83 GKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CcEEEEECHHHHHHHHHHHHHHHH
Confidence 478999999999888 66666554
No 217
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=52.53 E-value=17 Score=20.08 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=21.3
Q ss_pred eEEEEecchhhHHHHHHHHHhcCC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
++||-+.|++-++++.+.|++.+.
T Consensus 128 ~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 128 GVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTT
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHh
Confidence 589999999999999999988654
No 218
>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1
Probab=52.45 E-value=24 Score=18.74 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=22.6
Q ss_pred CceEEEEecchhhHHHHHH------HHHhcCCceeee
Q psy8719 1 MDRALIFCRTKLDCDNLER------YLNSIDRRLIYY 31 (33)
Q Consensus 1 ~~~aIVF~nTK~~ad~La~------~L~~~G~~~~~~ 31 (33)
|.+.+|+++..-|.|.++. .|++.|.+...+
T Consensus 1 ~~~i~I~gH~~pD~DaigSa~al~~~l~~~g~~~~~~ 37 (188)
T 1wpn_A 1 MEKILIFGHQNPDTDTICSAIAYADLKNKLGFNAEPV 37 (188)
T ss_dssp -CCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHHHHHHhCCceEEE
Confidence 5678999999999988754 467777765444
No 219
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=52.16 E-value=25 Score=18.53 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=23.3
Q ss_pred CceEEEEecchhh------HHHHHHHHHhcCCcee
Q psy8719 1 MDRALIFCRTKLD------CDNLERYLNSIDRRLI 29 (33)
Q Consensus 1 ~~~aIVF~nTK~~------ad~La~~L~~~G~~~~ 29 (33)
|.++|.|+++|-+ +-.||..|.+.|.+-.
T Consensus 1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vl 35 (237)
T 1g3q_A 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVL 35 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 5678999999865 6889999998887543
No 220
>2jkg_A Profilin; proline-rich ligand, protein-binding, malaria, cytoskeleton; 1.89A {Plasmodium falciparum} PDB: 2jkf_A
Probab=52.13 E-value=13 Score=21.35 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=12.2
Q ss_pred chhhHHHHHHHHHhcCC
Q psy8719 10 TKLDCDNLERYLNSIDR 26 (33)
Q Consensus 10 TK~~ad~La~~L~~~G~ 26 (33)
-+..+++|+++|.+.|.
T Consensus 155 c~~~ve~LadYL~~~Gy 171 (179)
T 2jkg_A 155 SKIAALTFAKELAESSQ 171 (179)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHcCc
Confidence 34568899999998875
No 221
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=52.11 E-value=27 Score=19.03 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=22.0
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
++++..++....+++.+.|++.|.+..+
T Consensus 33 ~V~~~~r~~~~~~~~~~~~~~~~~~~~~ 60 (252)
T 3h7a_A 33 TVFAGRRNGEKLAPLVAEIEAAGGRIVA 60 (252)
T ss_dssp EEEEEESSGGGGHHHHHHHHHTTCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEEE
Confidence 5677888888889999999888766544
No 222
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=52.10 E-value=19 Score=19.82 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=21.7
Q ss_pred eEEEEecchhhHHHHHHHHHhcCC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
++||.+.|+.-++++.+.|++.+.
T Consensus 159 ~~lil~Pt~~L~~q~~~~l~~~~~ 182 (282)
T 1rif_A 159 KILIIVPTTALTTQMADDFVDYRL 182 (282)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHTS
T ss_pred eEEEEECCHHHHHHHHHHHHHhcc
Confidence 799999999999999999988764
No 223
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=51.67 E-value=17 Score=19.50 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=19.2
Q ss_pred eEEEEecchhhHHHHHHHHHhc
Q psy8719 3 RALIFCRTKLDCDNLERYLNSI 24 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~ 24 (33)
++||-+.|++-++.+.+.+++.
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~ 125 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEY 125 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCcHHHHHHHHHHHHHH
Confidence 5899999999999998888764
No 224
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=51.37 E-value=15 Score=20.45 Aligned_cols=27 Identities=4% Similarity=-0.010 Sum_probs=20.2
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
-.|||+++++.+.++.. .+...++.|.
T Consensus 110 Glll~ak~~~~~~~l~~--~~~~v~K~Y~ 136 (234)
T 1ksk_A 110 GLVLMTDDGQWSHRITS--PRHHCEKTYL 136 (234)
T ss_dssp EEEEEESCHHHHHHHHC--TTSCCCEEEE
T ss_pred eEEEEEcCHHHHHHHhC--CCCCCCeEEE
Confidence 46899999988887765 4566677775
No 225
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=51.36 E-value=23 Score=19.04 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=22.5
Q ss_pred EEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
-|-++.......++++|.+.|++.+-++
T Consensus 104 ~V~~D~~~~g~~a~~~L~~~G~~~i~~i 131 (291)
T 3egc_A 104 AVLSENVRGARTAVEYLIARGHTRIGAI 131 (291)
T ss_dssp EEEECHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEECcHHHHHHHHHHHHHcCCCEEEEE
Confidence 4667778888899999999998877654
No 226
>1tsj_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, nysgxrc; 2.60A {Staphylococcus aureus subsp} SCOP: d.32.1.7
Probab=51.04 E-value=24 Score=18.10 Aligned_cols=25 Identities=8% Similarity=0.218 Sum_probs=19.5
Q ss_pred EEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 4 ALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 4 aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
..|-|.+.+++|++.+.|. .|....
T Consensus 76 l~~~~~d~~evd~~~~~l~-~G~~v~ 100 (139)
T 1tsj_A 76 LFVTVKDTIEMERLFNGLK-DEGAIL 100 (139)
T ss_dssp EEEECSSHHHHHHHHHHHH-TTCEEE
T ss_pred EEEECCCHHHHHHHHHHHh-CCCEEe
Confidence 3456777889999999998 687654
No 227
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=50.84 E-value=17 Score=19.49 Aligned_cols=28 Identities=0% Similarity=-0.077 Sum_probs=21.0
Q ss_pred EEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
-|-++.......++++|.+.|++.+-++
T Consensus 102 ~V~~D~~~~g~~a~~~L~~~G~~~I~~i 129 (276)
T 3jy6_A 102 QVVTDNFEAAKAATTAFRQQGYQHVVVL 129 (276)
T ss_dssp EEECCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEChHHHHHHHHHHHHHcCCCeEEEE
Confidence 3556677788888888888888876654
No 228
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=50.23 E-value=17 Score=18.92 Aligned_cols=19 Identities=11% Similarity=-0.064 Sum_probs=16.4
Q ss_pred cchhhHHHHHHHHHhcCCc
Q psy8719 9 RTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 9 nTK~~ad~La~~L~~~G~~ 27 (33)
||+.-|+.+++.|.+.|..
T Consensus 13 nT~~~A~~ia~~l~~~g~~ 31 (161)
T 3hly_A 13 YSDRLSQAIGRGLVKTGVA 31 (161)
T ss_dssp THHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhCCCe
Confidence 7889999999999988865
No 229
>4gym_A Glyoxalase/bleomycin resistance protein/dioxygena; PSI-biology, midwest center for structural genomics, MCSG, oxidoreductase; HET: MSE; 1.56A {Conexibacter woesei}
Probab=50.01 E-value=21 Score=17.48 Aligned_cols=22 Identities=9% Similarity=-0.003 Sum_probs=18.2
Q ss_pred EecchhhHHHHHHHHHhcCCce
Q psy8719 7 FCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 7 F~nTK~~ad~La~~L~~~G~~~ 28 (33)
-+.+++++|.+.+.+.+.|...
T Consensus 84 ~v~~~~~vd~~~~~~~~~g~~~ 105 (149)
T 4gym_A 84 SAIDRDDVDRFADTALGAGGTV 105 (149)
T ss_dssp ECSSHHHHHHHHHHHHHTTCEE
T ss_pred EeccHHHHHHHHHHHHhcCcee
Confidence 3567899999999999988754
No 230
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=49.85 E-value=17 Score=20.31 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.1
Q ss_pred ceEEEEecchhhHHHHHHHHHhc
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSI 24 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~ 24 (33)
+-++|-|++..+++.|.+.|.+.
T Consensus 147 DTIlVi~r~~~~a~~l~~~l~~l 169 (170)
T 3lap_A 147 DTILVVAREPTTGAQLAGMFENL 169 (170)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHhc
Confidence 45789999999999999999764
No 231
>2rk0_A Glyoxalase/bleomycin resistance protein/dioxygena; 11002Z, glyoxylase, dioxygenas PSI-II; 2.04A {Frankia SP}
Probab=49.57 E-value=17 Score=17.45 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=17.8
Q ss_pred ecchhhHHHHHHHHHhcCCce
Q psy8719 8 CRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~~~ 28 (33)
+.++++.+.+.+.|+++|...
T Consensus 80 v~~~~d~~~~~~~l~~~G~~~ 100 (136)
T 2rk0_A 80 VESMTDLDVLEERLAKAGAAF 100 (136)
T ss_dssp ESSHHHHHHHHHHHHHHTCCB
T ss_pred eCCHHHHHHHHHHHHHCCCcc
Confidence 567799999999999999753
No 232
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=49.40 E-value=19 Score=19.16 Aligned_cols=28 Identities=7% Similarity=-0.177 Sum_probs=21.9
Q ss_pred EEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
-|-++.......++++|.+.|++.+-++
T Consensus 116 ~V~~d~~~~~~~a~~~L~~~G~~~i~~i 143 (298)
T 3tb6_A 116 SFTLDDVKGGMMAAEHLLSLGHTHMMGI 143 (298)
T ss_dssp EEEECHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCcEEEE
Confidence 3666777888899999999998876543
No 233
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A
Probab=49.11 E-value=31 Score=18.80 Aligned_cols=28 Identities=11% Similarity=0.367 Sum_probs=20.7
Q ss_pred EEEec-chhhHHHHHHHHHh----------cCCceeeee
Q psy8719 5 LIFCR-TKLDCDNLERYLNS----------IDRRLIYYF 32 (33)
Q Consensus 5 IVF~n-TK~~ad~La~~L~~----------~G~~~~~~~ 32 (33)
|++|+ +-..+...+..|++ .|....|.+
T Consensus 115 VvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L 153 (211)
T 1qb0_A 115 IFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYIL 153 (211)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEE
T ss_pred EEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEE
Confidence 56799 87888888888886 477656543
No 234
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=48.99 E-value=12 Score=19.67 Aligned_cols=20 Identities=0% Similarity=-0.173 Sum_probs=17.1
Q ss_pred ecchhhHHHHHHHHHhcCCc
Q psy8719 8 CRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~~ 27 (33)
-||+.-|+.+++.|.+.|.+
T Consensus 16 GnT~~iA~~ia~~l~~~g~~ 35 (159)
T 3fni_A 16 GYSDRLAQAIINGITKTGVG 35 (159)
T ss_dssp TTHHHHHHHHHHHHHHTTCE
T ss_pred hHHHHHHHHHHHHHHHCCCe
Confidence 37899999999999988865
No 235
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=48.97 E-value=15 Score=21.19 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHhcCCceeee
Q psy8719 11 KLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 11 K~~ad~La~~L~~~G~~~~~~ 31 (33)
++.-+.+.+.|.+.|..+.||
T Consensus 231 ~eA~~~Ii~~L~~~g~~~~~~ 251 (252)
T 2wfd_A 231 QDVKKTIQKKMIDAGDALIYM 251 (252)
T ss_dssp HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHCCCCcccc
Confidence 455567899999999999998
No 236
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=48.92 E-value=27 Score=18.57 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=21.9
Q ss_pred CceEEEEecchhh------HHHHHHHHHhcCCce
Q psy8719 1 MDRALIFCRTKLD------CDNLERYLNSIDRRL 28 (33)
Q Consensus 1 ~~~aIVF~nTK~~------ad~La~~L~~~G~~~ 28 (33)
|.++|.|+++|-+ |-+||..|.+.|.+-
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~V 34 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKT 34 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcE
Confidence 5688999998876 578899999888754
No 237
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=48.90 E-value=20 Score=19.24 Aligned_cols=28 Identities=0% Similarity=-0.197 Sum_probs=21.6
Q ss_pred EEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
-|-++.......++++|.+.|++.+-++
T Consensus 106 ~V~~D~~~~~~~a~~~L~~~G~~~i~~i 133 (289)
T 3g85_A 106 SVNVDNYKMGEKASLLFAKKRYKSAAAI 133 (289)
T ss_dssp EEEECHHHHHHHHHHHHHHTTCCBCEEE
T ss_pred EEEeCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3556677888889999999998877654
No 238
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=48.77 E-value=33 Score=19.09 Aligned_cols=28 Identities=4% Similarity=0.052 Sum_probs=22.1
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
++++..+..+..+++.+.|.+.|.+..+
T Consensus 58 ~V~~~~r~~~~~~~~~~~~~~~~~~~~~ 85 (276)
T 3r1i_A 58 QVAVAARHSDALQVVADEIAGVGGKALP 85 (276)
T ss_dssp EEEEEESSGGGGHHHHHHHHHTTCCCEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEEE
Confidence 5778888888889999999887765443
No 239
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=48.71 E-value=5.1 Score=15.96 Aligned_cols=9 Identities=22% Similarity=0.933 Sum_probs=6.9
Q ss_pred EEEEecchh
Q psy8719 4 ALIFCRTKL 12 (33)
Q Consensus 4 aIVF~nTK~ 12 (33)
-||+||.+.
T Consensus 7 piiycnrrt 15 (21)
T 8tfv_A 7 PIIYCNRRT 15 (26)
T ss_dssp CCEEEEGGG
T ss_pred cEEEEcCcc
Confidence 379999875
No 240
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=48.42 E-value=20 Score=19.62 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=20.2
Q ss_pred eEEEEecchhhHHHHHHHHHhcC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G 25 (33)
++||-+.|++-++++++.+++.+
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~ 135 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALG 135 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHHh
Confidence 59999999999999998887763
No 241
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=48.39 E-value=29 Score=18.17 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=22.4
Q ss_pred eEEEEecchh------hHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKL------DCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~------~ad~La~~L~~~G~~~~~ 30 (33)
++|.++++|- -|-+|+..|.++|.+-.+
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll 35 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG 35 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 6788899884 578899999999876543
No 242
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=48.10 E-value=35 Score=19.77 Aligned_cols=31 Identities=10% Similarity=-0.030 Sum_probs=22.4
Q ss_pred ceEEEEecchh----hHHHHHHHHHhcCCceeeee
Q psy8719 2 DRALIFCRTKL----DCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 2 ~~aIVF~nTK~----~ad~La~~L~~~G~~~~~~~ 32 (33)
.+++|+.|.+. ..+++.+.|++.|.+...+.
T Consensus 30 ~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~ 64 (332)
T 2bon_A 30 PASLLILNGKSTDNLPLREAIMLLREEGMTIHVRV 64 (332)
T ss_dssp CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEE
Confidence 46788888543 35778889999888765543
No 243
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=48.02 E-value=27 Score=18.88 Aligned_cols=28 Identities=11% Similarity=-0.064 Sum_probs=21.5
Q ss_pred EEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
-|-++........+++|.+.|++.+-+.
T Consensus 105 ~V~~D~~~~~~~a~~~L~~~G~~~I~~i 132 (289)
T 3k9c_A 105 AVRGDDVAGITLAVDHLTELGHRNIAHI 132 (289)
T ss_dssp EEEECHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEeChHHHHHHHHHHHHHCCCCcEEEE
Confidence 4566777788888899999998877654
No 244
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=47.86 E-value=33 Score=18.73 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=22.4
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
++++..++.+..+++.+.|.+.|.+..+
T Consensus 37 ~V~~~~r~~~~~~~~~~~~~~~~~~~~~ 64 (264)
T 3ucx_A 37 DLVLAARTVERLEDVAKQVTDTGRRALS 64 (264)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCcEEE
Confidence 5778888888899999999888766544
No 245
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=47.86 E-value=23 Score=18.74 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=20.6
Q ss_pred EEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
|-++.......++++|.+.|++.+-+.
T Consensus 94 V~~d~~~~~~~a~~~L~~~G~~~i~~i 120 (276)
T 2h0a_A 94 VYLDNRLGGRLAGAYLARFPGPIFAIA 120 (276)
T ss_dssp EEECSHHHHHHHHHHHTTSSSCEEEEE
T ss_pred EEEccHHHHHHHHHHHHHcCCCeEEEE
Confidence 556677788888899988888876543
No 246
>1osc_A Similar to divalent cation tolerant protein CUTA; copper resistance, structural proteomics in europe, spine, structural genomics; 2.15A {Rattus norvegicus} SCOP: d.58.5.2
Probab=47.79 E-value=27 Score=18.72 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=17.4
Q ss_pred EEEE--ecchhhHHHHHHHHHhcCC
Q psy8719 4 ALIF--CRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 4 aIVF--~nTK~~ad~La~~L~~~G~ 26 (33)
+||+ |.+++.|++|++.|-+.+-
T Consensus 24 ~~V~tT~p~~e~A~~iA~~Lve~rL 48 (126)
T 1osc_A 24 SAAFVTCPNEKVAKEIARAVVEKRL 48 (126)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHTTS
T ss_pred EEEEEecCCHHHHHHHHHHHHHCCe
Confidence 3455 5667899999999987763
No 247
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=47.29 E-value=13 Score=19.50 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHhcCC
Q psy8719 11 KLDCDNLERYLNSIDR 26 (33)
Q Consensus 11 K~~ad~La~~L~~~G~ 26 (33)
...+++|+++|.+.|.
T Consensus 115 ~~~ve~ladYL~~~GY 130 (130)
T 3nul_A 115 NLVVERLGDYLIESEL 130 (130)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 3568899999998873
No 248
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=47.18 E-value=26 Score=17.98 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=21.5
Q ss_pred eEEEEec--chhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCR--TKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~n--TK~~ad~La~~L~~~G~~~~ 29 (33)
.+.||.+ +....+.|...|+..|+...
T Consensus 43 g~~i~i~G~~~~~~~~L~~~i~~~Gg~v~ 71 (132)
T 1wf6_A 43 GCRIYLCGFSGRKLDKLRRLINSGGGVRF 71 (132)
T ss_dssp TCEEEEESCCSHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEECCChHHHHHHHHHHHHCCCEEe
Confidence 4566776 67788899999999998765
No 249
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=46.93 E-value=27 Score=19.13 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=21.0
Q ss_pred eEEEEecc--------------hhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRT--------------KLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nT--------------K~~ad~La~~L~~~G~~~~ 29 (33)
-||||.|. ..|++.|.+.|++.|....
T Consensus 35 ~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~ 75 (167)
T 1pyo_A 35 LALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVH 75 (167)
T ss_dssp EEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEE
T ss_pred EEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEE
Confidence 57888875 3489999999998886543
No 250
>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} SCOP: d.110.1.0 PDB: 3dav_A
Probab=46.66 E-value=12 Score=19.45 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHhcCC
Q psy8719 11 KLDCDNLERYLNSIDR 26 (33)
Q Consensus 11 K~~ad~La~~L~~~G~ 26 (33)
...+++|+++|.+.|.
T Consensus 112 ~~~ve~ladYL~~~Gy 127 (127)
T 3d9y_A 112 AKITEALADYLVGVGY 127 (127)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 3568899999998873
No 251
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=46.64 E-value=33 Score=18.34 Aligned_cols=28 Identities=4% Similarity=-0.034 Sum_probs=22.1
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
++++..++.+..+++.+.|.+.|.+..+
T Consensus 35 ~V~~~~r~~~~~~~~~~~~~~~~~~~~~ 62 (253)
T 3qiv_A 35 AVVVADINAEAAEAVAKQIVADGGTAIS 62 (253)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHhcCCcEEE
Confidence 5778888888899999998887765543
No 252
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=46.63 E-value=30 Score=18.40 Aligned_cols=28 Identities=18% Similarity=-0.002 Sum_probs=20.0
Q ss_pred EEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
-|-++.......++++|.+.|++.+-++
T Consensus 105 ~V~~d~~~~~~~~~~~L~~~G~~~i~~i 132 (289)
T 1dbq_A 105 AVIDNAFEGGYMAGRYLIERGHREIGVI 132 (289)
T ss_dssp EEEECHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCeEEEE
Confidence 3555666777888888888888776543
No 253
>3tum_A Shikimate dehydrogenase family protein; rossmann-fold NAD(P)(+)-binding site, shikimate dehydrogenas substrate binding domain, oxidoreductase; HET: NAD; 2.15A {Pseudomonas putida}
Probab=46.61 E-value=34 Score=19.84 Aligned_cols=26 Identities=4% Similarity=-0.152 Sum_probs=21.4
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCc
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~ 27 (33)
.+..|+-||.+.++.|++.+......
T Consensus 150 ~~i~i~nRt~~ra~~la~~~~~~~~~ 175 (269)
T 3tum_A 150 ASITLCDPSTARMGAVCELLGNGFPG 175 (269)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHHCTT
T ss_pred CeEEEeCCCHHHHHHHHHHHhccCCc
Confidence 46788999999999999999876543
No 254
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=46.59 E-value=10 Score=19.82 Aligned_cols=19 Identities=11% Similarity=0.048 Sum_probs=15.5
Q ss_pred cchhhHHHHHHHHHhcCCc
Q psy8719 9 RTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 9 nTK~~ad~La~~L~~~G~~ 27 (33)
||+.-|+.|++.|.+.|.+
T Consensus 22 nT~~~A~~ia~~l~~~g~~ 40 (167)
T 1ykg_A 22 NARRVAEALRDDLLAAKLN 40 (167)
T ss_dssp HHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHCCCc
Confidence 6788889999999887754
No 255
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=46.56 E-value=21 Score=16.95 Aligned_cols=27 Identities=11% Similarity=0.179 Sum_probs=19.5
Q ss_pred EEEEec--chhhHHHHHHHHHhcCCceee
Q psy8719 4 ALIFCR--TKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 4 aIVF~n--TK~~ad~La~~L~~~G~~~~~ 30 (33)
+.++++ +...-+.|.+.+.+.|+.+.-
T Consensus 16 ~~~~isg~~~~~~~~L~~~i~~~GG~~~~ 44 (97)
T 2ebw_A 16 VAIYVNGYTDPSAEELRKLMMLHGGQYHV 44 (97)
T ss_dssp CEEEECSSCSSCHHHHHHHHHHTTCEECS
T ss_pred eEEEEeCCCcccHHHHHHHHHHcCCEEee
Confidence 344555 456678999999999997654
No 256
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Probab=46.11 E-value=33 Score=19.84 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=22.4
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCc
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~ 27 (33)
..++||........++++.|.+.|..
T Consensus 186 ~~tlVl~~~~~~~~~i~~~L~~~G~~ 211 (294)
T 2ybo_A 186 KQTLVFYMGLGNLAEIAARLVEHGLA 211 (294)
T ss_dssp SCEEEEESCGGGHHHHHHHHHHTTCC
T ss_pred CCeEEEECcHHHHHHHHHHHHhcCCC
Confidence 36889999999999999999998753
No 257
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=45.71 E-value=39 Score=19.09 Aligned_cols=29 Identities=17% Similarity=0.102 Sum_probs=20.5
Q ss_pred CceEEEEecc-----hhhHHHHHHHHHhcCCcee
Q psy8719 1 MDRALIFCRT-----KLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 1 ~~~aIVF~nT-----K~~ad~La~~L~~~G~~~~ 29 (33)
|.+++|+.|. ++.++++.++|+++|.+..
T Consensus 5 mkki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~ 38 (292)
T 2an1_A 5 FKCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVI 38 (292)
T ss_dssp CCEEEEECC-------CHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 3567888883 2447789999999988653
No 258
>1xqa_A Glyoxalase/bleomycin resistance protein; dioxygenase, structural GEN midwest center for structural genomics, MCSG; HET: P6G; 1.80A {Bacillus cereus atcc 14579} SCOP: d.32.1.2
Probab=45.63 E-value=23 Score=16.25 Aligned_cols=20 Identities=10% Similarity=0.062 Sum_probs=17.5
Q ss_pred ecchhhHHHHHHHHHhcCCc
Q psy8719 8 CRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~~ 27 (33)
+.+.++.+.+.+.|.+.|..
T Consensus 68 v~~~~d~~~~~~~l~~~G~~ 87 (113)
T 1xqa_A 68 QESEEQVDKINQRLKEDGFL 87 (113)
T ss_dssp CSSHHHHHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHHHHCCCE
Confidence 56779999999999999875
No 259
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=45.61 E-value=14 Score=19.21 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHhcC
Q psy8719 11 KLDCDNLERYLNSID 25 (33)
Q Consensus 11 K~~ad~La~~L~~~G 25 (33)
...+++|+++|.++|
T Consensus 110 ~~~ve~ladyL~~~g 124 (125)
T 1acf_A 110 ANVVEKLADYLIGQG 124 (125)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 456789999999887
No 260
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=45.58 E-value=11 Score=21.29 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=20.7
Q ss_pred EEEEecch-hhH---HHHHHHHHhcCCcee
Q psy8719 4 ALIFCRTK-LDC---DNLERYLNSIDRRLI 29 (33)
Q Consensus 4 aIVF~nTK-~~a---d~La~~L~~~G~~~~ 29 (33)
-|+.++.+ .++ +.+++.|++.|.+-.
T Consensus 23 ~vlvtr~~~~~~~~~~~l~~~L~~~G~~~~ 52 (286)
T 1jr2_A 23 KVLLLKDAKEDDCGQDPYIRELGLYGLEAT 52 (286)
T ss_dssp EEEEEESSCCCBTTBCHHHHHHHTTTCEEE
T ss_pred EEEEEcCCCCCCCCCcHHHHHHHHCCCceE
Confidence 46667776 777 999999999998754
No 261
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=45.11 E-value=12 Score=19.65 Aligned_cols=22 Identities=9% Similarity=-0.228 Sum_probs=19.3
Q ss_pred EEecchhhHHHHHHHHHhcCCc
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~ 27 (33)
..++||+-|.+|-++|...+..
T Consensus 15 ~~lDTk~I~~~ike~L~~~~is 36 (101)
T 1wh6_A 15 REVDTLELTRQVKEKLAKNGIC 36 (101)
T ss_dssp SCCCHHHHHHHHHHHHHTTTCC
T ss_pred ccCCHHHHHHHHHHHHHHcCCc
Confidence 4689999999999999988764
No 262
>3r4q_A Lactoylglutathione lyase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.51A {Agrobacterium tumefaciens}
Probab=44.79 E-value=28 Score=17.45 Aligned_cols=21 Identities=10% Similarity=0.272 Sum_probs=18.5
Q ss_pred ecchhhHHHHHHHHHhcCCce
Q psy8719 8 CRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~~~ 28 (33)
+.+.++.+.+.+.|++.|...
T Consensus 84 V~~~~dld~~~~~l~~~G~~~ 104 (160)
T 3r4q_A 84 ADDKAEVDEWKTRFEALEIPV 104 (160)
T ss_dssp ESSHHHHHHHHHHHHTTTCCC
T ss_pred eCCHHHHHHHHHHHHHCCCEE
Confidence 568899999999999999765
No 263
>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} SCOP: d.26.1.1 PDB: 3ui5_A 3ui6_A 1fjd_A 1eq3_A
Probab=44.70 E-value=29 Score=17.16 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=16.7
Q ss_pred EEEEecchhhHHHHHHHHHh
Q psy8719 4 ALIFCRTKLDCDNLERYLNS 23 (33)
Q Consensus 4 aIVF~nTK~~ad~La~~L~~ 23 (33)
..|.+.+++.|+++.+.|++
T Consensus 11 ~~Ilv~~~~~A~~i~~~l~~ 30 (101)
T 3ui4_A 11 RHILCEKHGKIMEAMEKLKS 30 (101)
T ss_dssp EEEEESSHHHHHHHHHHHHT
T ss_pred EEEEECCHHHHHHHHHHHHC
Confidence 35778899999999999963
No 264
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=44.30 E-value=24 Score=19.01 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=20.6
Q ss_pred EEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
|-++.......++++|.+.|++.+-++
T Consensus 118 V~~d~~~~~~~a~~~L~~~G~~~I~~i 144 (293)
T 2iks_A 118 VVGADQDDAEMLAEELRKFPAETVLYL 144 (293)
T ss_dssp EEECHHHHHHHHHHHHHTSCCSSEEEE
T ss_pred EEecCHHHHHHHHHHHHHCCCCEEEEE
Confidence 455667778888999999998876554
No 265
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=43.85 E-value=37 Score=18.42 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=21.4
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
++++..++.+..+++.+.|.+.|.+..+
T Consensus 32 ~V~~~~r~~~~~~~~~~~~~~~~~~~~~ 59 (257)
T 3imf_A 32 RVVITGRTKEKLEEAKLEIEQFPGQILT 59 (257)
T ss_dssp EEEEEESCHHHHHHHHHHHCCSTTCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCcEEE
Confidence 5677888888888888888877765443
No 266
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=43.83 E-value=26 Score=19.66 Aligned_cols=25 Identities=4% Similarity=0.024 Sum_probs=20.9
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCC
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
+.++||....+...++++.|.+.|.
T Consensus 161 ~~t~vl~~~~~~~~~i~~~L~~~g~ 185 (253)
T 4e16_A 161 QTSMVIFLSVQEIEKVVSKLLEGGY 185 (253)
T ss_dssp CSEEEEEECSTTHHHHHHHHHHTTC
T ss_pred CCeEEEECcHHHHHHHHHHHHhcCC
Confidence 3578888888999999999998775
No 267
>1vhf_A Periplasmic divalent cation tolerance protein; structural genomics, unknown function; 1.54A {Thermotoga maritima} SCOP: d.58.5.2
Probab=43.72 E-value=35 Score=17.94 Aligned_cols=20 Identities=10% Similarity=-0.089 Sum_probs=15.7
Q ss_pred EEecchhhHHHHHHHHHhcC
Q psy8719 6 IFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G 25 (33)
+=|++++.|++||+.|-+.+
T Consensus 8 tT~p~~e~A~~iA~~Lve~r 27 (113)
T 1vhf_A 8 STFPNEEKALEIGRKLLEKR 27 (113)
T ss_dssp EEESSHHHHHHHHHHHHHTT
T ss_pred EecCCHHHHHHHHHHHHHCC
Confidence 34567789999999998765
No 268
>1o5j_A Periplasmic divalent cation tolerance protein; TM1056, struc genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.5.2
Probab=43.68 E-value=35 Score=17.97 Aligned_cols=21 Identities=10% Similarity=-0.084 Sum_probs=16.3
Q ss_pred EEEecchhhHHHHHHHHHhcC
Q psy8719 5 LIFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G 25 (33)
++=|++++.|++||+.|-+.+
T Consensus 17 ~tT~p~~e~A~~iA~~Lve~r 37 (113)
T 1o5j_A 17 YSTFPNEEKALEIGRKLLEKR 37 (113)
T ss_dssp EEEESSHHHHHHHHHHHHHTT
T ss_pred EEecCCHHHHHHHHHHHHhCC
Confidence 334567889999999998765
No 269
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=43.36 E-value=25 Score=20.00 Aligned_cols=23 Identities=13% Similarity=0.184 Sum_probs=19.8
Q ss_pred ceEEEEecchhhHHHHHHHHHhc
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSI 24 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~ 24 (33)
+-++|-|++..+++.|.+.|.+.
T Consensus 153 DTIlVi~r~~~~a~~l~~~l~~l 175 (180)
T 3v4g_A 153 DTIFITPTLTITTEQLFKSVCEL 175 (180)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHH
Confidence 45789999999999999998763
No 270
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=43.34 E-value=30 Score=19.76 Aligned_cols=25 Identities=8% Similarity=0.062 Sum_probs=21.8
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCC
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
..++||....+...++++.|.+.|.
T Consensus 177 ~~tlVl~~~~~~~~~i~~~L~~~G~ 201 (280)
T 1s4d_A 177 SPVIVMYMAMKHIGAITANLIAGGR 201 (280)
T ss_dssp CSEEEEESCSTTHHHHHHHHHHTTC
T ss_pred CCeEEEECchhhHHHHHHHHHhcCC
Confidence 3678999999999999999999875
No 271
>1uku_A CUTA1, periplasmic divalent cation tolerance protein CUT; copper tolerance, structural genomics, metal binding P; 1.45A {Pyrococcus horikoshii} SCOP: d.58.5.2 PDB: 1umj_A 1v99_A* 1v9b_A 1j2v_A 2e66_A
Probab=43.26 E-value=34 Score=17.57 Aligned_cols=22 Identities=5% Similarity=-0.109 Sum_probs=17.3
Q ss_pred EEEEecchhhHHHHHHHHHhcC
Q psy8719 4 ALIFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 4 aIVF~nTK~~ad~La~~L~~~G 25 (33)
+++=|++++.|++||+.|-+.+
T Consensus 4 V~~T~p~~~~A~~ia~~Lve~r 25 (102)
T 1uku_A 4 VYTTFPDWESAEKVVKTLLKER 25 (102)
T ss_dssp EEEEESSHHHHHHHHHHHHHTT
T ss_pred EEEecCCHHHHHHHHHHHHHCC
Confidence 4455677899999999998664
No 272
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=43.26 E-value=28 Score=18.88 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=20.5
Q ss_pred EEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
|-++.......++++|.+.|++.+-++
T Consensus 111 V~~D~~~~~~~a~~~L~~~G~~~I~~i 137 (295)
T 3hcw_A 111 IDNDNILASENLTRHVIEQGVDELIFI 137 (295)
T ss_dssp EEECHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred EecCcHHHHHHHHHHHHHcCCccEEEE
Confidence 445667778888889988898877654
No 273
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=43.12 E-value=31 Score=20.45 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=20.3
Q ss_pred EEEEecchhhHHHHHHHHHhcCCce
Q psy8719 4 ALIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 4 aIVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
..|+.|....++++.++|+++|.+.
T Consensus 32 i~iv~~~~~~~~~l~~~L~~~g~~v 56 (278)
T 1z0s_A 32 AAVVYKTDGHVKRIEEALKRLEVEV 56 (278)
T ss_dssp EEEEESSSTTHHHHHHHHHHTTCEE
T ss_pred EEEEeCCcHHHHHHHHHHHHCCCEE
Confidence 5677776666999999999998764
No 274
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=43.04 E-value=23 Score=19.81 Aligned_cols=27 Identities=4% Similarity=-0.001 Sum_probs=19.6
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
-.|||+++++.+.++.. .+...++.|.
T Consensus 109 Glll~ak~~~~a~~l~~--~~~~v~K~Y~ 135 (243)
T 1vio_A 109 GLVLLTDDGQWSHRITS--PKHHCEKTYL 135 (243)
T ss_dssp EEEEEESCHHHHHHHHC--TTSCCCEEEE
T ss_pred EEEEEEECHHHHHHHhC--CCCCCCEEEE
Confidence 47899999988777655 3556677775
No 275
>2nuh_A Periplasmic divalent cation tolerance protein; CUTA, unknown function; 1.39A {Xylella fastidiosa}
Probab=42.99 E-value=36 Score=18.02 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=16.3
Q ss_pred EEEecchhhHHHHHHHHHhcC
Q psy8719 5 LIFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G 25 (33)
++=|.+++.|++||+.|-+.+
T Consensus 9 ~tT~p~~e~A~~iA~~Lve~r 29 (118)
T 2nuh_A 9 FSTCPDLPSAEIISRVLVQER 29 (118)
T ss_dssp EEEESSHHHHHHHHHHHHHTT
T ss_pred EEecCCHHHHHHHHHHHHHCC
Confidence 344567899999999998765
No 276
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=42.89 E-value=27 Score=18.57 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=16.7
Q ss_pred EecchhhHHHHHHHHHhcCCceeeee
Q psy8719 7 FCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 7 F~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
-++.......++++|.+.|++.+-++
T Consensus 120 ~~d~~~~~~~a~~~l~~~G~~~I~~i 145 (296)
T 3brq_A 120 WCDHKQTSFNAVAELINAGHQEIAFL 145 (296)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEchHHHHHHHHHHHHHCCCceEEEE
Confidence 34445566777778777777765543
No 277
>1p1l_A CUTA, periplasmic divalent cation tolerance protein CUT; NYSGXRC, PSI, protein structure initiative; 2.00A {Archaeoglobus fulgidus} SCOP: d.58.5.2
Probab=42.82 E-value=35 Score=17.54 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=16.6
Q ss_pred EEEecchhhHHHHHHHHHhcC
Q psy8719 5 LIFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G 25 (33)
++=|++++.|++||+.|-+.+
T Consensus 6 ~~T~p~~~~A~~ia~~Lve~r 26 (102)
T 1p1l_A 6 YITAPSLEEAERIAKRLLEKK 26 (102)
T ss_dssp EEEESSHHHHHHHHHHHHHTT
T ss_pred EEecCCHHHHHHHHHHHHhCC
Confidence 444677899999999998765
No 278
>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A
Probab=42.75 E-value=17 Score=18.92 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHhcC
Q psy8719 11 KLDCDNLERYLNSID 25 (33)
Q Consensus 11 K~~ad~La~~L~~~G 25 (33)
...+++|+++|.++|
T Consensus 110 ~~~ve~ladYL~~~g 124 (125)
T 1ypr_A 110 TKIVEQLADYLIGVQ 124 (125)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 556889999999887
No 279
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=42.73 E-value=38 Score=18.18 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=22.3
Q ss_pred CceEEEEecchhh------HHHHHHHHHhcCCcee
Q psy8719 1 MDRALIFCRTKLD------CDNLERYLNSIDRRLI 29 (33)
Q Consensus 1 ~~~aIVF~nTK~~------ad~La~~L~~~G~~~~ 29 (33)
|.++|.|+++|-+ +-.||..|.+.|.+-.
T Consensus 1 M~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vl 35 (263)
T 1hyq_A 1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVT 35 (263)
T ss_dssp -CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEE
Confidence 4578889998865 6889999998887643
No 280
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=42.69 E-value=17 Score=18.26 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=17.2
Q ss_pred cchhhHHHHHHHHHhcCCce
Q psy8719 9 RTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 9 nTK~~ad~La~~L~~~G~~~ 28 (33)
=+|++|+.+-..|...|...
T Consensus 52 vsKeeAe~ik~~Le~aGA~V 71 (74)
T 1ctf_A 52 VSKDDAEALKKALEEAGAEV 71 (74)
T ss_dssp ECHHHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHHHHHHcCCEE
Confidence 37999999999999999753
No 281
>2pbd_P Profilin-1, profilin I; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens} SCOP: d.110.1.1 PDB: 1fik_A 1cjf_A 1pfl_A 1fil_A* 2pav_P* 3chw_P* 1awi_A 1cf0_A* 1pne_A 1hlu_P 2btf_P* 3u4l_P* 3ub5_P*
Probab=42.63 E-value=17 Score=19.35 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHhcC
Q psy8719 11 KLDCDNLERYLNSID 25 (33)
Q Consensus 11 K~~ad~La~~L~~~G 25 (33)
...+++|+++|.++|
T Consensus 124 ~~~ve~ladYL~~~G 138 (139)
T 2pbd_P 124 NKKCYEMASHLRRSQ 138 (139)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 456789999999887
No 282
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=42.60 E-value=45 Score=18.74 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=22.3
Q ss_pred ceEEEEecch-----------hhHHHHHHHHHhcCCceee
Q psy8719 2 DRALIFCRTK-----------LDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 2 ~~aIVF~nTK-----------~~ad~La~~L~~~G~~~~~ 30 (33)
.++=|||..+ +.|.+|++.|.+.|....|
T Consensus 24 ~~IaV~Gss~~~~~~~~~~~~~~A~~lg~~LA~~G~~vVs 63 (195)
T 1rcu_A 24 KKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKGYLVFN 63 (195)
T ss_dssp CEEEEEECCSCTTSTTTGGGHHHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEEecCCCCCccccHHHHHHHHHHHHHHHHCCCEEEe
Confidence 4567888432 5789999999999987765
No 283
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=42.42 E-value=33 Score=22.42 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=26.1
Q ss_pred CceEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 1 MDRALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 1 ~~~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
|..+||=+.-|.+..++++.|.+.|.+..
T Consensus 13 ~~~aliSV~DK~gl~~~A~~L~~~G~eii 41 (464)
T 1zcz_A 13 MKRILVSLYEKEKYLDILRELHEKGWEIW 41 (464)
T ss_dssp CCEEEEECSSTGGGHHHHHHHHHTTCEEE
T ss_pred ccEEEEEecCccCHHHHHHHHHHCCCEEE
Confidence 57899999999999999999999998753
No 284
>3ahp_A CUTA1; thermostable protein, electron transport; 2.70A {Shewanella}
Probab=42.42 E-value=36 Score=17.66 Aligned_cols=21 Identities=10% Similarity=0.023 Sum_probs=16.2
Q ss_pred EEEecchhhHHHHHHHHHhcC
Q psy8719 5 LIFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G 25 (33)
++=|++++.|++||+.|-+.+
T Consensus 10 ~tT~p~~~~A~~ia~~Lve~r 30 (108)
T 3ahp_A 10 FTTCPDADIACRIATALVEAK 30 (108)
T ss_dssp EEEESSHHHHHHHHHHHHHTT
T ss_pred EEecCCHHHHHHHHHHHHhCC
Confidence 344567789999999998764
No 285
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=42.34 E-value=41 Score=18.28 Aligned_cols=28 Identities=4% Similarity=-0.001 Sum_probs=22.3
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
++++..+..+..+++.+.|.+.|.+..+
T Consensus 38 ~V~~~~r~~~~~~~~~~~~~~~~~~~~~ 65 (256)
T 3gaf_A 38 SVVVTDLKSEGAEAVAAAIRQAGGKAIG 65 (256)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCcEEE
Confidence 5778888888899999999888766543
No 286
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=42.32 E-value=30 Score=18.78 Aligned_cols=28 Identities=7% Similarity=0.020 Sum_probs=21.0
Q ss_pred EEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
-|-++........+++|.+.|++.+-++
T Consensus 105 ~V~~D~~~~~~~a~~~L~~~G~~~I~~i 132 (294)
T 3qk7_A 105 WFDFDNHAGASLAVKRLLELGHQRIAFV 132 (294)
T ss_dssp EEEECHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEcChHHHHHHHHHHHHHCCCceEEEE
Confidence 3556677788888888888888876554
No 287
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=42.06 E-value=7 Score=20.54 Aligned_cols=23 Identities=9% Similarity=-0.244 Sum_probs=19.8
Q ss_pred EEecchhhHHHHHHHHHhcCCce
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~ 28 (33)
+..+||+-|.++-++|...+..-
T Consensus 15 ~~ldTk~I~~~ike~L~~~~isQ 37 (101)
T 1x2l_A 15 EQLDTAEIAFQVKEQLLKHNIGQ 37 (101)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCCH
T ss_pred CccCHHHHHHHHHHHHHHcCCCH
Confidence 56799999999999999887653
No 288
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=42.01 E-value=33 Score=19.78 Aligned_cols=24 Identities=4% Similarity=0.205 Sum_probs=19.1
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCc
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~ 27 (33)
.++.++ .+++++++.+.|++.|.+
T Consensus 284 ~v~al~-~~~~a~~~~~~l~~~g~~ 307 (321)
T 4hac_A 284 CMVALT-APEKCNQVAEAVAGAGGK 307 (321)
T ss_dssp EEEEEE-CSTTHHHHHHHHHHTTCE
T ss_pred EEEEEc-CHHHHHHHHHHHHhCCCe
Confidence 456677 678899999999998753
No 289
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=41.99 E-value=45 Score=19.17 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=19.0
Q ss_pred EEEEecchhhHHHHHHHHHhcCCc
Q psy8719 4 ALIFCRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 4 aIVF~nTK~~ad~La~~L~~~G~~ 27 (33)
++.+|. +++++++++.|++.|.+
T Consensus 251 v~al~~-~~~a~~v~~~l~~~~~~ 273 (298)
T 3hul_A 251 VLVFAP-RNLANKLQTSLQTLEID 273 (298)
T ss_dssp EEEEEC-GGGHHHHHHHHHTTCCS
T ss_pred eEEEEC-HHHHHHHHHHHHhcCCC
Confidence 566777 88999999999998754
No 290
>1nza_A CUTA, divalent cation tolerance protein; cellular tolerance, monomer, structural genomics, RIKE structural genomics/proteomics initiative; 1.70A {Thermus thermophilus} SCOP: d.58.5.2 PDB: 1v6h_A
Probab=41.97 E-value=36 Score=17.52 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=16.5
Q ss_pred EEEecchhhHHHHHHHHHhcC
Q psy8719 5 LIFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G 25 (33)
++=|++++.|++||+.|-+.+
T Consensus 6 ~tT~p~~~~A~~ia~~Lve~r 26 (103)
T 1nza_A 6 LITVPSEEVARTIAKALVEER 26 (103)
T ss_dssp EEEESSHHHHHHHHHHHHHTT
T ss_pred EEecCCHHHHHHHHHHHHHCC
Confidence 444677899999999998765
No 291
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=41.74 E-value=28 Score=20.23 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=21.7
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
-.|||+|+.+-+.+|... +...++.|+
T Consensus 59 GLLLlT~dg~~a~~L~~p--~~~v~K~Y~ 85 (237)
T 2gml_A 59 GLIFLTNHGDLVNKILRA--GNDHEKEYL 85 (237)
T ss_dssp EEEEEESCHHHHHHHHHH--HHHSCEEEE
T ss_pred eEEEEEcCHHHHHHHhCc--cCCCCEEEE
Confidence 368999999999998873 566778776
No 292
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=41.70 E-value=40 Score=19.24 Aligned_cols=28 Identities=7% Similarity=-0.217 Sum_probs=21.8
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
++++--+..+..+++++.|.+.|.+..+
T Consensus 35 ~Vvi~~~~~~~~~~~~~~l~~~g~~~~~ 62 (255)
T 4g81_D 35 RVILNDIRATLLAESVDTLTRKGYDAHG 62 (255)
T ss_dssp EEEECCSCHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCcEEE
Confidence 4666677788889999999998876543
No 293
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=41.64 E-value=35 Score=23.34 Aligned_cols=29 Identities=10% Similarity=0.305 Sum_probs=24.7
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
+...|-++|+.+++.+.+.|.+.|....|
T Consensus 552 ~DIAIL~R~~~~~~~i~~~L~~~gIP~~~ 580 (1180)
T 1w36_B 552 SDISVLVRSRQEAAQVRDALTLLEIPSVY 580 (1180)
T ss_dssp GGEEEEESSHHHHHHHHHHHHTTTCCEEE
T ss_pred ccEEEEeecchHHHHHHHHHHHCCCCEEE
Confidence 34678899999999999999999987643
No 294
>1naq_A Periplasmic divalent cation tolerance protein CUTA; copper resistance, structural proteomics in europe, spine, structural genomics; HET: MBO; 1.70A {Escherichia coli} SCOP: d.58.5.2 PDB: 3ah6_A 3aa9_A 3aa8_A 3opk_A
Probab=41.14 E-value=39 Score=17.65 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=16.1
Q ss_pred EEEecchhhHHHHHHHHHhcC
Q psy8719 5 LIFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G 25 (33)
++=|++++.|++||+.|-+.+
T Consensus 15 ~tT~p~~e~A~~iA~~Lve~r 35 (112)
T 1naq_A 15 LCTAPDEATAQDLAAKVLAEK 35 (112)
T ss_dssp EEEESSHHHHHHHHHHHHHTT
T ss_pred EEecCCHHHHHHHHHHHHhcC
Confidence 334567789999999998765
No 295
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=41.01 E-value=32 Score=21.05 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.0
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCC
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
.++|||++....-|-|.++|...|.
T Consensus 126 ~kVLIfsq~t~~LDilE~~l~~~~~ 150 (328)
T 3hgt_A 126 TETAIVCRPGRTMDLLEALLLGNKV 150 (328)
T ss_dssp EEEEEEECSTHHHHHHHHHHTTSSC
T ss_pred CEEEEEECChhHHHHHHHHHhcCCC
Confidence 4799999999999999999987654
No 296
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=41.01 E-value=23 Score=18.71 Aligned_cols=26 Identities=12% Similarity=-0.143 Sum_probs=17.3
Q ss_pred EEecchhhHHHHHHHHHhcCCceeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
|-++.......++++|.+.|++.+-+
T Consensus 100 V~~d~~~~~~~a~~~L~~~G~~~i~~ 125 (275)
T 3d8u_A 100 IGVDHFEVGKACTRHLIEQGFKNVGF 125 (275)
T ss_dssp ECBCHHHHHHHHHHHHHTTTCCCEEE
T ss_pred EEEChHHHHHHHHHHHHHCCCCeEEE
Confidence 34455566777778888777776544
No 297
>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A*
Probab=40.76 E-value=19 Score=19.27 Aligned_cols=15 Identities=13% Similarity=0.317 Sum_probs=12.5
Q ss_pred hhhHHHHHHHHHhcC
Q psy8719 11 KLDCDNLERYLNSID 25 (33)
Q Consensus 11 K~~ad~La~~L~~~G 25 (33)
...+++|+++|..+|
T Consensus 125 ~~~ve~ladYL~~~G 139 (140)
T 2v8f_A 125 NKKAYSMAKYLRDSG 139 (140)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 456789999999887
No 298
>1kr4_A Protein TM1056, CUTA; structural genomics, PSI, protein structure initiative center for structural genomics, MCSG, unknown function; 1.40A {Thermotoga maritima} SCOP: d.58.5.2
Probab=40.74 E-value=41 Score=18.05 Aligned_cols=21 Identities=10% Similarity=-0.084 Sum_probs=16.1
Q ss_pred EEEecchhhHHHHHHHHHhcC
Q psy8719 5 LIFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G 25 (33)
++=|++++.|++||+.|-+.+
T Consensus 27 ~tT~p~~e~A~~iA~~Lve~r 47 (125)
T 1kr4_A 27 YSTFPNEEKALEIGRKLLEKR 47 (125)
T ss_dssp EEEESSHHHHHHHHHHHHHTT
T ss_pred EEecCCHHHHHHHHHHHHhcC
Confidence 334567789999999998765
No 299
>2zom_A CUTA1, protein CUTA, chloroplast, putative, expressed; trimeric structure, protein stability, unknown function; 3.02A {Oryza sativa subsp}
Probab=40.50 E-value=40 Score=17.62 Aligned_cols=20 Identities=15% Similarity=0.011 Sum_probs=15.6
Q ss_pred EEecchhhHHHHHHHHHhcC
Q psy8719 6 IFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G 25 (33)
+=|++++.|++||+.|-+.+
T Consensus 15 tT~p~~e~A~~iA~~Lve~r 34 (113)
T 2zom_A 15 VTVPNKEAGKRLAGSIISEK 34 (113)
T ss_dssp EEESSHHHHHHHHHHHHHTT
T ss_pred EecCCHHHHHHHHHHHHhcC
Confidence 33566789999999998765
No 300
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=40.19 E-value=32 Score=19.08 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=18.9
Q ss_pred EEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
|-++........+++|.+.|++.+-++
T Consensus 161 V~~D~~~~~~~a~~~L~~~G~~~I~~i 187 (338)
T 3dbi_A 161 VWCDHKQTSFNAVAELINAGHQEIAFL 187 (338)
T ss_dssp ECBCHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEChHHHHHHHHHHHHHCCCCEEEEE
Confidence 445566677778888888888776554
No 301
>2w9r_A YLJA, ATP-dependent CLP protease adapter protein CLPS; chaperone, adaptor protein, DNA condensation, iron, CLPS, CLPA, cytoplasm, N-END RULE; HET: DNA; 1.70A {Escherichia coli} PDB: 2wa9_A 1mbx_C* 1mbv_B 1mbu_C* 1r6o_C* 1r6q_C* 2wa8_A 3o2h_A* 3o2b_A* 1mg9_A* 1lzw_A*
Probab=40.15 E-value=12 Score=19.64 Aligned_cols=23 Identities=13% Similarity=-0.015 Sum_probs=19.7
Q ss_pred ceEEEEecchhhHHHHHHHHHhc
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSI 24 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~ 24 (33)
++++|.+-+++.|+.-++.|.+.
T Consensus 69 G~avv~~~~~e~AE~k~~~l~~~ 91 (108)
T 2w9r_A 69 GKAICGVFTAEVAETKVAMVNKY 91 (108)
T ss_dssp SEEEEEEEEHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCHHHHHHHHHHHHHH
Confidence 47899999999999999988753
No 302
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=40.14 E-value=48 Score=18.41 Aligned_cols=28 Identities=7% Similarity=0.131 Sum_probs=22.1
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
++++..+.....+++++.|.+.|.+..+
T Consensus 30 ~V~~~~r~~~~~~~~~~~l~~~~~~~~~ 57 (264)
T 3tfo_A 30 KILLGARRQARIEAIATEIRDAGGTALA 57 (264)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCcEEE
Confidence 5677788888899999999888766543
No 303
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=39.83 E-value=49 Score=18.42 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=21.7
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
++++..+..+..+++++.|.+.|.+..+
T Consensus 54 ~V~~~~r~~~~~~~~~~~l~~~~~~~~~ 81 (283)
T 3v8b_A 54 TVGALGRTRTEVEEVADEIVGAGGQAIA 81 (283)
T ss_dssp EEEEEESSHHHHHHHHHHHTTTTCCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCcEEE
Confidence 5677788888889999988887766543
No 304
>3huh_A Virulence protein STM3117; structural genomics, nysgrc, target 13955A1BCT15P1, dioxygen virulence, PSI-2, protein structure initiative; 1.50A {Salmonella enterica subsp} PDB: 3hnq_A
Probab=39.65 E-value=22 Score=17.35 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=18.2
Q ss_pred EEEecchhhHHHHHHHHHhcCCce
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
|.| .+.++.+.+.+.|+++|...
T Consensus 89 i~f-~~~~dl~~~~~~l~~~G~~~ 111 (152)
T 3huh_A 89 LCF-ITSTPINDVVSEILQAGISI 111 (152)
T ss_dssp EEE-EESSCHHHHHHHHHHTTCCC
T ss_pred EEE-EecCCHHHHHHHHHHCCCeE
Confidence 555 45569999999999999764
No 305
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=39.64 E-value=52 Score=18.69 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=22.6
Q ss_pred EEEecchhhHHHHHHHHHhcCCceeeeeC
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRLIYYFT 33 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~~~~~~ 33 (33)
+|.|=-...++++++.|.+.|..-++-|+
T Consensus 152 vIIAvPs~~aq~v~d~lv~~GIk~I~nFa 180 (212)
T 3keo_A 152 AILTVPSTEAQEVADILVKAGIKGILSFS 180 (212)
T ss_dssp EEECSCGGGHHHHHHHHHHHTCCEEEECS
T ss_pred EEEecCchhHHHHHHHHHHcCCCEEEEcC
Confidence 44444456789999999999999888775
No 306
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=39.32 E-value=47 Score=19.22 Aligned_cols=28 Identities=7% Similarity=-0.041 Sum_probs=23.2
Q ss_pred EEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
-|-++.......++++|.+.|++.+-++
T Consensus 118 ~V~~D~~~~g~~a~~~L~~~G~r~I~~i 145 (412)
T 4fe7_A 118 YIATDNYALVESAFLHLKEKGVNRFAFY 145 (412)
T ss_dssp EEEECHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEeCHHHHHHHHHHHHHHcCCceEEEe
Confidence 4667778889999999999999887664
No 307
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=39.11 E-value=32 Score=18.36 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=18.7
Q ss_pred EEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
|-++.......++++|.+.|++.+-++
T Consensus 111 V~~D~~~~g~~a~~~L~~~G~~~i~~i 137 (292)
T 3k4h_A 111 VDNDNYTAAREVAEYLISLGHKQIAFI 137 (292)
T ss_dssp EECCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEECcHHHHHHHHHHHHHCCCceEEEE
Confidence 445556677778888888888766543
No 308
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=39.06 E-value=32 Score=18.59 Aligned_cols=28 Identities=29% Similarity=0.247 Sum_probs=22.2
Q ss_pred EEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
-|-++.......++++|.+.|++.+-++
T Consensus 110 ~V~~D~~~~g~~a~~~L~~~G~~~I~~i 137 (301)
T 3miz_A 110 SIEPDDYQGARDLTRYLLERGHRRIGYI 137 (301)
T ss_dssp EEEECHHHHHHHHHHHHHTTTCCSEEEE
T ss_pred EEeeChHHHHHHHHHHHHHcCCCeEEEE
Confidence 4566777888899999999999877654
No 309
>1u7i_A Hypothetical protein; structural genomics, PA1358, PSI, PROT structure initiative; HET: MSE; 1.40A {Pseudomonas aeruginosa} SCOP: d.32.1.7
Probab=39.03 E-value=36 Score=16.72 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=17.5
Q ss_pred EEecchhhHHHHHHHHHhcCCcee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
+-|..++++|++.+.|. .|+...
T Consensus 84 ~~v~d~~evd~~~~~l~-~Gg~v~ 106 (136)
T 1u7i_A 84 VDCESNAQIERLAEALS-DGGKAL 106 (136)
T ss_dssp EECCCHHHHHHHHHHHH-TTSEEE
T ss_pred EEcCCHHHHHHHHHHHH-cCCEEe
Confidence 34556677999999999 887643
No 310
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=38.98 E-value=33 Score=18.94 Aligned_cols=27 Identities=7% Similarity=-0.011 Sum_probs=19.9
Q ss_pred EEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
|-++.......++++|.+.|++.+-++
T Consensus 157 V~~D~~~~~~~a~~~L~~~G~~~I~~i 183 (332)
T 2hsg_A 157 VTIDYEQAAFDAVQSLIDSGHKNIAFV 183 (332)
T ss_dssp EEECHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEChHHHHHHHHHHHHHCCCCEEEEE
Confidence 455666777888888888888876553
No 311
>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum}
Probab=38.96 E-value=27 Score=16.93 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=16.0
Q ss_pred EEEecchhhHHHHHHHHHh
Q psy8719 5 LIFCRTKLDCDNLERYLNS 23 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~ 23 (33)
-|++.++..++++.+.|++
T Consensus 14 hIl~~~~~~A~~i~~~l~~ 32 (97)
T 2rqs_A 14 HILVKKQGEALAVQERLKA 32 (97)
T ss_dssp EEEESCHHHHHHHHHHHTT
T ss_pred EEEeCCHHHHHHHHHHHHC
Confidence 4677899999999999874
No 312
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=38.94 E-value=37 Score=18.12 Aligned_cols=27 Identities=0% Similarity=0.052 Sum_probs=18.8
Q ss_pred EEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
-|-++.......++++|.+.|++.+-+
T Consensus 97 ~V~~D~~~~~~~a~~~L~~~G~~~i~~ 123 (277)
T 3cs3_A 97 QVLLDNRGGATQAIEQFVNVGSKKVLL 123 (277)
T ss_dssp EEEECHHHHHHHHHHHHHHTTCSCEEE
T ss_pred EEEeCcHHHHHHHHHHHHHcCCceEEE
Confidence 355566677777888888888776644
No 313
>3l20_A Putative uncharacterized protein; hypothetical protein, unknown function; 2.45A {Staphylococcus aureus}
Probab=38.69 E-value=33 Score=18.71 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=18.4
Q ss_pred EEEEecch-----hhHHHHHHHHHhcC
Q psy8719 4 ALIFCRTK-----LDCDNLERYLNSID 25 (33)
Q Consensus 4 aIVF~nTK-----~~ad~La~~L~~~G 25 (33)
..|-|.+. +++|++.+.|.+.|
T Consensus 106 l~l~~~~~d~~~~~dvd~~~~~l~~~G 132 (172)
T 3l20_A 106 LLIDYDVNNKEDADKVEAFYEQIKDHS 132 (172)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHTTCT
T ss_pred EEEEEccCccCcHHHHHHHHHHHHhCC
Confidence 45666777 89999999999988
No 314
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=38.66 E-value=35 Score=18.59 Aligned_cols=27 Identities=7% Similarity=0.073 Sum_probs=20.1
Q ss_pred EEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
|-++........+++|.+.|++.+-++
T Consensus 111 V~~D~~~~g~~a~~~L~~~G~~~I~~i 137 (303)
T 3kke_A 111 VILDDQKGGGIATEHLITLGHSRIAFI 137 (303)
T ss_dssp EEECHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEECcHHHHHHHHHHHHHCCCCeEEEE
Confidence 455667778888888888888876554
No 315
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=38.47 E-value=38 Score=18.20 Aligned_cols=27 Identities=15% Similarity=-0.127 Sum_probs=18.0
Q ss_pred EEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
|-++.......++++|.+.|++.+-++
T Consensus 105 V~~D~~~~g~~a~~~L~~~G~~~i~~i 131 (290)
T 3clk_A 105 ISSDDEDIGYQATNLLINEGHRQIGIA 131 (290)
T ss_dssp EECCHHHHHHHHHHHHHTTTCCSEEEE
T ss_pred EEeChHHHHHHHHHHHHHcCCCEEEEE
Confidence 344555667778888888887766543
No 316
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=38.38 E-value=35 Score=18.25 Aligned_cols=27 Identities=4% Similarity=-0.113 Sum_probs=20.2
Q ss_pred EEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
|-++.......++++|.+.|++.+-++
T Consensus 102 V~~d~~~~g~~a~~~L~~~G~~~I~~i 128 (288)
T 2qu7_A 102 ITVDNEEAAYIATKRVLESTCKEVGLL 128 (288)
T ss_dssp EEECHHHHHHHHHHHHHTSSCCCEEEE
T ss_pred EEECcHHHHHHHHHHHHHcCCCcEEEE
Confidence 455667778888899998888776543
No 317
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=38.35 E-value=45 Score=19.31 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=20.1
Q ss_pred ceEEEEecchhhHHHHHHHHHhcC
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G 25 (33)
.++.|+.+|.+.++++++.+...+
T Consensus 151 ~~v~v~~R~~~~a~~la~~~~~~~ 174 (281)
T 3o8q_A 151 ASITVTNRTFAKAEQLAELVAAYG 174 (281)
T ss_dssp SEEEEEESSHHHHHHHHHHHGGGS
T ss_pred CeEEEEECCHHHHHHHHHHhhccC
Confidence 367889999999999999987654
No 318
>3eq5_A SKI-like protein; TGF-beta, SIG protein, structural genomics, SGC stockholm, structural GEN consortium, SGC; 2.45A {Homo sapiens}
Probab=38.22 E-value=16 Score=20.14 Aligned_cols=13 Identities=31% Similarity=0.146 Sum_probs=11.4
Q ss_pred chhhHHHHHHHHH
Q psy8719 10 TKLDCDNLERYLN 22 (33)
Q Consensus 10 TK~~ad~La~~L~ 22 (33)
||.|+++|++.|-
T Consensus 109 Tk~DaErLc~~ll 121 (125)
T 3eq5_A 109 TLTDAQRLCNALL 121 (125)
T ss_dssp EHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHhc
Confidence 7999999998874
No 319
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=38.21 E-value=31 Score=18.75 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=19.2
Q ss_pred EEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
|-++.......++++|.+.|++.+-++
T Consensus 124 V~~D~~~~g~~a~~~L~~~G~~~I~~i 150 (305)
T 3huu_A 124 IDNDNIDAAYQLTQYLYHLGHRHILFL 150 (305)
T ss_dssp EECCHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEeCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 445566677788888888888776543
No 320
>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding protein; HET: MSE; 1.70A {Toxoplasma gondii}
Probab=38.21 E-value=21 Score=19.78 Aligned_cols=14 Identities=14% Similarity=0.223 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHhcC
Q psy8719 12 LDCDNLERYLNSID 25 (33)
Q Consensus 12 ~~ad~La~~L~~~G 25 (33)
..+++|+++|.+.|
T Consensus 152 ~~ve~ladYL~~~G 165 (166)
T 3nec_A 152 TSALAFAEYLHQSG 165 (166)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC
Confidence 45789999999887
No 321
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=38.11 E-value=22 Score=19.42 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=15.2
Q ss_pred cchhhHHHHHHHHHhcC
Q psy8719 9 RTKLDCDNLERYLNSID 25 (33)
Q Consensus 9 nTK~~ad~La~~L~~~G 25 (33)
+++++++.+.++|+++|
T Consensus 153 gR~~r~~~i~~~~~~~~ 169 (169)
T 2fcl_A 153 GRVEXAETLRXWLNERX 169 (169)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 68899999999999886
No 322
>2rbb_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-2, PROT structure initiative; 1.82A {Burkholderia phytofirmans}
Probab=37.87 E-value=36 Score=16.34 Aligned_cols=21 Identities=24% Similarity=0.121 Sum_probs=17.3
Q ss_pred ecchhhHHHHHHHHHhcCCce
Q psy8719 8 CRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~~~ 28 (33)
+.++++.+.+.+.|.++|...
T Consensus 83 v~~~~dv~~~~~~l~~~G~~~ 103 (141)
T 2rbb_A 83 VDTKEAVDKLVPVAIAAGATL 103 (141)
T ss_dssp CSCHHHHHHHHHHHHHTTCEE
T ss_pred cCCHHHHHHHHHHHHHcCCeE
Confidence 456679999999999999764
No 323
>1sbx_A SKI oncogene, C-SKI; winged helix, forkhead, oncoprotein; 1.65A {Homo sapiens} SCOP: a.6.1.4
Probab=37.67 E-value=17 Score=19.38 Aligned_cols=14 Identities=36% Similarity=0.259 Sum_probs=12.1
Q ss_pred chhhHHHHHHHHHh
Q psy8719 10 TKLDCDNLERYLNS 23 (33)
Q Consensus 10 TK~~ad~La~~L~~ 23 (33)
||.|+++|.+.|..
T Consensus 92 tk~DaerL~~~ll~ 105 (106)
T 1sbx_A 92 TKTDAERLCNALLY 105 (106)
T ss_dssp EHHHHHHHHHHHHC
T ss_pred eHHHHHHHHHHHhc
Confidence 79999999998864
No 324
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=37.52 E-value=35 Score=18.34 Aligned_cols=26 Identities=15% Similarity=0.049 Sum_probs=18.0
Q ss_pred EEecchhhHHHHHHHHHhcCCceeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
|-++.......++++|.+.|++.+-+
T Consensus 105 V~~D~~~~g~~a~~~L~~~G~~~I~~ 130 (287)
T 3bbl_A 105 VDIDGTAGTRQAVEYLIGRGHRRIAI 130 (287)
T ss_dssp EEECHHHHHHHHHHHHHHHTCCCEEE
T ss_pred EEeccHHHHHHHHHHHHHCCCCeEEE
Confidence 44556667777788888888776644
No 325
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=37.52 E-value=42 Score=18.57 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=18.9
Q ss_pred EEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
|-++.......++++|.+.|++.+-++
T Consensus 160 V~~D~~~~~~~a~~~L~~~G~~~I~~i 186 (332)
T 2o20_A 160 VNIDYHLAAYQSTKKLIDSGNKKIAYI 186 (332)
T ss_dssp EECCHHHHHHHHHHHHHHTTCSSEEEE
T ss_pred EEeChHHHHHHHHHHHHHCCCCeEEEE
Confidence 445556667778888888888776554
No 326
>3gsd_A Divalent-cation tolerance protein CUTA; IDP00456, metal-BIN structural genomics, center for structural genomics of INFE diseases, csgid; HET: EPE; 2.05A {Yersinia pestis CO92} SCOP: d.58.5.2
Probab=37.47 E-value=48 Score=17.66 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=16.5
Q ss_pred EEEEe--cchhhHHHHHHHHHhcC
Q psy8719 4 ALIFC--RTKLDCDNLERYLNSID 25 (33)
Q Consensus 4 aIVF~--nTK~~ad~La~~L~~~G 25 (33)
+||++ .+++.|++||+.|-+.+
T Consensus 22 ~lV~tT~p~~e~A~~iA~~Lve~r 45 (122)
T 3gsd_A 22 IVVLCTAPDEASAQNLAAQVLGEK 45 (122)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHTT
T ss_pred EEEEEecCCHHHHHHHHHHHHHCC
Confidence 45554 56789999999997654
No 327
>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis}
Probab=37.40 E-value=36 Score=16.17 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=15.8
Q ss_pred EEEecchhhHHHHHHHHHh
Q psy8719 5 LIFCRTKLDCDNLERYLNS 23 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~ 23 (33)
-|+..+++.++.+.+.|++
T Consensus 9 hIl~~~~~~A~~i~~~l~~ 27 (93)
T 1zk6_A 9 HILVADKKTAEEVEKKLKK 27 (93)
T ss_dssp EEEESSHHHHHHHHHHHHH
T ss_pred EEEeccHHHHHHHHHHHHC
Confidence 4667789999999999974
No 328
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=37.38 E-value=40 Score=21.30 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=22.1
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCC
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
.+++|-+.|...+++|.+.|.+.|.
T Consensus 225 ~~ilv~a~tn~A~~~l~~~l~~~~~ 249 (624)
T 2gk6_A 225 GPVLVCAPSNIAVDQLTEKIHQTGL 249 (624)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTTTC
T ss_pred CeEEEEeCcHHHHHHHHHHHHhcCC
Confidence 4789999999999999999988764
No 329
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=37.31 E-value=51 Score=17.87 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=21.7
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
++++..+.....+.+.+.|.+.|.+..+
T Consensus 55 ~V~~~~r~~~~~~~~~~~~~~~~~~~~~ 82 (262)
T 3rkr_A 55 RVVLTARDVEKLRAVEREIVAAGGEAES 82 (262)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCceeE
Confidence 5677788888888898888887766544
No 330
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=37.26 E-value=54 Score=18.13 Aligned_cols=28 Identities=11% Similarity=0.005 Sum_probs=21.1
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
++++..+.....+++.+.|.+.|.+..+
T Consensus 52 ~V~~~~r~~~~~~~~~~~l~~~~~~~~~ 79 (271)
T 4ibo_A 52 RILINGTDPSRVAQTVQEFRNVGHDAEA 79 (271)
T ss_dssp EEEECCSCHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCceEE
Confidence 4677778888888888888887765443
No 331
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=37.11 E-value=14 Score=19.64 Aligned_cols=23 Identities=13% Similarity=-0.090 Sum_probs=19.6
Q ss_pred EEecchhhHHHHHHHHHhcCCce
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~ 28 (33)
..++|++-|++|-++|.+.+..-
T Consensus 2 ~~~dt~~i~~~i~~~l~~~~i~q 24 (164)
T 2d5v_A 2 EEINTKEVAQRITTELKRYSIPQ 24 (164)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCCH
T ss_pred CccCHHHHHHHHHHHHHHcCCch
Confidence 46899999999999999987653
No 332
>3zw5_A Glyoxalase domain-containing protein 5; lyase; 1.60A {Homo sapiens}
Probab=37.09 E-value=29 Score=17.02 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=18.2
Q ss_pred EEEecchhhHHHHHHHHHhcCCce
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
+.| .+.++.+.+.+.|.++|...
T Consensus 93 ~~~-~~~~dl~~~~~~l~~~G~~~ 115 (147)
T 3zw5_A 93 ICL-ITEVPLEEMIQHLKACDVPI 115 (147)
T ss_dssp EEE-ECSSCHHHHHHHHHHTTCCC
T ss_pred EEE-EeccCHHHHHHHHHHcCCce
Confidence 455 35579999999999999864
No 333
>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}
Probab=36.99 E-value=22 Score=17.89 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=12.3
Q ss_pred chhhHHHHHHHHHhc
Q psy8719 10 TKLDCDNLERYLNSI 24 (33)
Q Consensus 10 TK~~ad~La~~L~~~ 24 (33)
+.++++.|+++|.+.
T Consensus 77 s~eda~~Iv~YLa~~ 91 (92)
T 3a9f_A 77 SDDDAKTIGIWLHEK 91 (92)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 578899999999763
No 334
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=36.96 E-value=7.2 Score=23.79 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=0.0
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
.+||+|++-..+...+..|++.|....|.
T Consensus 427 ~iv~~C~~G~rs~~a~~~L~~~G~~~v~~ 455 (466)
T 3r2u_A 427 VIYVHCQSGIRSSIAIGILEHKGYHNIIN 455 (466)
T ss_dssp -----------------------------
T ss_pred eEEEECCCChHHHHHHHHHHHcCCCCEEE
Confidence 57899999999999999999999865543
No 335
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=36.91 E-value=52 Score=17.92 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.2
Q ss_pred eEEEEecchhhHHHHHHHHHhcCC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
++++..++.+..+++.+.|++.|.
T Consensus 36 ~V~~~~r~~~~~~~~~~~l~~~~~ 59 (262)
T 3pk0_A 36 NVAVAGRSTADIDACVADLDQLGS 59 (262)
T ss_dssp EEEEEESCHHHHHHHHHHHHTTSS
T ss_pred EEEEEeCCHHHHHHHHHHHHhhCC
Confidence 577888999999999999988774
No 336
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=36.82 E-value=31 Score=20.75 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=20.1
Q ss_pred eEEEEecchhhHHHHHHHHHhc
Q psy8719 3 RALIFCRTKLDCDNLERYLNSI 24 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~ 24 (33)
.+.|.|+|..+++.+.+.|++.
T Consensus 254 ~~aIL~rtN~~~~~~n~~lr~~ 275 (459)
T 3upu_A 254 ENRVMAFTNKSVDKLNSIIRKK 275 (459)
T ss_dssp TEEEEESSHHHHHHHHHHHHHH
T ss_pred ceEEEEehHhHHHHHHHHHHHH
Confidence 6789999999999999999885
No 337
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=36.46 E-value=34 Score=19.03 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=20.2
Q ss_pred EEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
|-++.......++++|.+.|++.+-+.
T Consensus 158 V~~D~~~~~~~a~~~L~~~G~~~I~~i 184 (339)
T 3h5o_A 158 VGFSQEDAGAAITRHLLSRGKRRIGFL 184 (339)
T ss_dssp EECCHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEECHHHHHHHHHHHHHHCCCCeEEEE
Confidence 455666778888889988888876553
No 338
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=36.35 E-value=55 Score=18.36 Aligned_cols=27 Identities=11% Similarity=0.002 Sum_probs=19.3
Q ss_pred EEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
|-++.......++++|.+.|++.+-++
T Consensus 164 V~~D~~~~~~~a~~~L~~~G~~~I~~i 190 (348)
T 3bil_A 164 ATSNPQPGIAAAVELLAHNNALPIGYL 190 (348)
T ss_dssp EEEECHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEeChHHHHHHHHHHHHHCCCCeEEEE
Confidence 455666677788888888888776554
No 339
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=36.32 E-value=28 Score=17.71 Aligned_cols=19 Identities=0% Similarity=-0.024 Sum_probs=16.4
Q ss_pred ecchhhHHHHHHHHHhcCC
Q psy8719 8 CRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~ 26 (33)
+.++.+|..+++.|-+.|.
T Consensus 67 ~~~r~eAv~lg~~Ll~~G~ 85 (105)
T 1fsh_A 67 FKERREARKYASSMLKHGF 85 (105)
T ss_dssp CSSHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHCCc
Confidence 3689999999999998874
No 340
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=36.25 E-value=40 Score=16.41 Aligned_cols=29 Identities=7% Similarity=0.162 Sum_probs=23.1
Q ss_pred ceEEEEecc------hhhHHHHHHHHHhcCCceee
Q psy8719 2 DRALIFCRT------KLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 2 ~~aIVF~nT------K~~ad~La~~L~~~G~~~~~ 30 (33)
..++||..+ =--|.++-+.|++.|..+.+
T Consensus 18 ~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~ 52 (109)
T 3ipz_A 18 EKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFED 52 (109)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEE
T ss_pred CCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEE
Confidence 358899874 56799999999999987654
No 341
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=36.16 E-value=53 Score=17.74 Aligned_cols=25 Identities=12% Similarity=0.217 Sum_probs=20.4
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCc
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~ 27 (33)
++++.+++....+++.+.|.+.+..
T Consensus 38 ~V~~~~r~~~~~~~~~~~l~~~~~~ 62 (311)
T 3o26_A 38 MVVLTCRDVTKGHEAVEKLKNSNHE 62 (311)
T ss_dssp EEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 5788888888888888888887754
No 342
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=35.88 E-value=57 Score=18.01 Aligned_cols=28 Identities=7% Similarity=-0.105 Sum_probs=21.6
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
++++..+..+..+++.+.|.+.|.+..+
T Consensus 50 ~V~~~~r~~~~~~~~~~~l~~~~~~~~~ 77 (279)
T 3sju_A 50 AVYGCARDAKNVSAAVDGLRAAGHDVDG 77 (279)
T ss_dssp EEEEEESCHHHHHHHHHHHHTTTCCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCcEEE
Confidence 4677788888888999988887765543
No 343
>4e98_A CUTA1 divalent ION tolerance protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, signaling protein; 2.00A {Cryptosporidium parvum}
Probab=35.84 E-value=53 Score=17.97 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=16.5
Q ss_pred EEEE--ecchhhHHHHHHHHHhcC
Q psy8719 4 ALIF--CRTKLDCDNLERYLNSID 25 (33)
Q Consensus 4 aIVF--~nTK~~ad~La~~L~~~G 25 (33)
+||+ |++++.|++||+.|-+.+
T Consensus 37 ~lV~tT~p~~e~A~~IA~~LVe~r 60 (138)
T 4e98_A 37 ILIYISAPNQDEATSIAKTLVDEE 60 (138)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHTT
T ss_pred EEEEEecCCHHHHHHHHHHHHHCC
Confidence 4555 456789999999997654
No 344
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=35.82 E-value=56 Score=20.58 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.6
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCc
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~ 27 (33)
.++||=+.|...+|++.+.|...|..
T Consensus 234 ~~ILv~a~TN~AvD~i~erL~~~~~~ 259 (646)
T 4b3f_X 234 LKVLCCAPSNIAVDNLVERLALCKQR 259 (646)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEcCchHHHHHHHHHHHhcCCc
Confidence 47899999999999999999887654
No 345
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=35.74 E-value=68 Score=19.77 Aligned_cols=27 Identities=7% Similarity=-0.058 Sum_probs=18.9
Q ss_pred CceEEEEecchh-----hHHHHHHHHHhcCCc
Q psy8719 1 MDRALIFCRTKL-----DCDNLERYLNSIDRR 27 (33)
Q Consensus 1 ~~~aIVF~nTK~-----~ad~La~~L~~~G~~ 27 (33)
|.+++|+.|... .+.+++++|.+.+.+
T Consensus 41 ~k~V~II~n~~~~~~~~~~~~l~~~L~~~~~g 72 (388)
T 3afo_A 41 LQNVYITKKPWTPSTREAMVEFITHLHESYPE 72 (388)
T ss_dssp CCEEEEEECTTCHHHHHHHHHHHHHHHHHCTT
T ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC
Confidence 457888988543 367778888888433
No 346
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=35.70 E-value=36 Score=18.39 Aligned_cols=27 Identities=7% Similarity=-0.017 Sum_probs=18.1
Q ss_pred EEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
|-++.......++++|.+.|++.+-++
T Consensus 113 V~~D~~~~g~~a~~~L~~~G~~~I~~i 139 (289)
T 2fep_A 113 VAIDYEQAIYDAVKLLVDKGHTDIAFV 139 (289)
T ss_dssp EECCHHHHHHHHHHHHHHTTCSSEEEE
T ss_pred EEECcHHHHHHHHHHHHHCCCCeEEEE
Confidence 444556667777888888887766543
No 347
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=35.65 E-value=47 Score=17.04 Aligned_cols=20 Identities=0% Similarity=-0.119 Sum_probs=15.5
Q ss_pred cchhhHHHHHHHHHh-cCCce
Q psy8719 9 RTKLDCDNLERYLNS-IDRRL 28 (33)
Q Consensus 9 nTK~~ad~La~~L~~-~G~~~ 28 (33)
||+.-++.+++.|.+ .|.+.
T Consensus 14 ~t~~la~~i~~~l~~~~g~~v 34 (198)
T 3b6i_A 14 HIETMARAVAEGASKVDGAEV 34 (198)
T ss_dssp HHHHHHHHHHHHHHTSTTCEE
T ss_pred HHHHHHHHHHHHHhhcCCCEE
Confidence 677888888888887 77654
No 348
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=35.51 E-value=62 Score=18.31 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=21.1
Q ss_pred ceEEEEecch--------hhHHHHHHHHHhcCCceee
Q psy8719 2 DRALIFCRTK--------LDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 2 ~~aIVF~nTK--------~~ad~La~~L~~~G~~~~~ 30 (33)
.++=|||-++ +.|.+|+..|.++|....|
T Consensus 14 ~~IaV~cGS~~~~~~~y~~~A~~lg~~LA~~G~~vVs 50 (215)
T 2a33_A 14 RRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVY 50 (215)
T ss_dssp SEEEEECCSSCCSSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEEECCCCCCchHHHHHHHHHHHHHHHCCCEEEE
Confidence 4566785433 4588999999999987765
No 349
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=35.50 E-value=44 Score=18.53 Aligned_cols=28 Identities=18% Similarity=-0.002 Sum_probs=20.1
Q ss_pred EEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
-|-++.......++++|.+.|++.+-++
T Consensus 156 ~V~~D~~~~~~~a~~~L~~~G~~~I~~i 183 (340)
T 1qpz_A 156 AVIDNAFEGGYMAGRYLIERGHREIGVI 183 (340)
T ss_dssp EEECCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred EEEECHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3555666677888888888888876554
No 350
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=35.43 E-value=19 Score=19.63 Aligned_cols=20 Identities=10% Similarity=-0.104 Sum_probs=15.6
Q ss_pred ecchhhHHHHHHHHHhcCCc
Q psy8719 8 CRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~~ 27 (33)
-||+.-|+.|++.|.+.|..
T Consensus 33 GnTe~~A~~ia~~l~~~g~~ 52 (191)
T 1bvy_F 33 GTAEGTARDLADIAMSKGFA 52 (191)
T ss_dssp SHHHHHHHHHHHHHHTTTCC
T ss_pred hHHHHHHHHHHHHHHhCCCc
Confidence 36788888888888877764
No 351
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=35.24 E-value=37 Score=20.90 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=17.0
Q ss_pred ceEEEEecchhhHHHHHHHHH
Q psy8719 2 DRALIFCRTKLDCDNLERYLN 22 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~ 22 (33)
+++|||+..++..++|.+.++
T Consensus 435 D~vivf~~~~~~i~~ve~lF~ 455 (461)
T 4g65_A 435 DHVVMFLVDKKYVPDVEALFQ 455 (461)
T ss_dssp CEEEEEESCGGGHHHHHHHHC
T ss_pred CEEEEEEcCHHHHHHHHHHcC
Confidence 468999999999999876653
No 352
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=35.11 E-value=58 Score=19.92 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=22.3
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCce
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
+...|-++++..+..+.+.|.+.|...
T Consensus 348 ~diaVL~r~~~~~~~l~~~l~~~~Ip~ 374 (647)
T 3lfu_A 348 AECAILYRSNAQSRVLEEALLQASMPY 374 (647)
T ss_dssp GGEEEEESSGGGHHHHHHHHHHTTCCE
T ss_pred cCEEEEEeCchhHHHHHHHHHHCCCCE
Confidence 345677899999999999999988764
No 353
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=34.78 E-value=53 Score=17.39 Aligned_cols=28 Identities=11% Similarity=-0.052 Sum_probs=19.6
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
++++..+.....+.+.+.|+..|.+..+
T Consensus 39 ~V~~~~r~~~~~~~~~~~l~~~~~~~~~ 66 (260)
T 3awd_A 39 RVIIADLDEAMATKAVEDLRMEGHDVSS 66 (260)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCceEE
Confidence 4677777777777888888776655433
No 354
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=34.57 E-value=43 Score=18.49 Aligned_cols=27 Identities=15% Similarity=-0.140 Sum_probs=20.0
Q ss_pred EEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
|-++.......++++|.+.|++.+-++
T Consensus 152 V~~D~~~~~~~a~~~L~~~G~~~I~~i 178 (330)
T 3ctp_A 152 ISSDNYNGGRMAFDHLYEKGCRKILHI 178 (330)
T ss_dssp EEECHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEeCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 445666777888899988898876553
No 355
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=34.38 E-value=47 Score=16.65 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=20.9
Q ss_pred CceEEEEecchhhHHHHHHHHHhcCCc
Q psy8719 1 MDRALIFCRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 1 ~~~aIVF~nTK~~ad~La~~L~~~G~~ 27 (33)
|....++++ ....+.+-+.|.+.|..
T Consensus 1 Mk~I~aII~-~~~~~~V~~aL~~~G~~ 26 (116)
T 1vfj_A 1 MKLIVAIVR-PEKLNEVLKALFQAEVR 26 (116)
T ss_dssp CEEEEEEEC-GGGHHHHHHHHHHTTCC
T ss_pred CEEEEEEEC-HHHHHHHHHHHHhCCCC
Confidence 455667777 88999999999999864
No 356
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=34.12 E-value=32 Score=19.26 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=22.2
Q ss_pred EEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
-|-++.......++++|.+.|++.+-++
T Consensus 153 ~V~~D~~~~~~~a~~~L~~~G~~~I~~i 180 (333)
T 3jvd_A 153 RVLCDDEAGFFQLTESVLGGSGMNIAAL 180 (333)
T ss_dssp EEEECHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred EEEEChHHHHHHHHHHHHHCCCCeEEEE
Confidence 3566777888899999999999887654
No 357
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=33.96 E-value=69 Score=20.56 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=21.9
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCce
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
..-|.++|...+..+.+.|.+.|...
T Consensus 353 diAIL~R~~~~~~~le~~L~~~gIPy 378 (724)
T 1pjr_A 353 DFAVLYRTNAQSRVMEEMLLKANIPY 378 (724)
T ss_dssp GEEEEESSGGGHHHHHHHHHHTTCCE
T ss_pred heeeeeecchhHHHHHHHHHHcCCCE
Confidence 45688899999999999999988764
No 358
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=33.96 E-value=50 Score=19.10 Aligned_cols=24 Identities=8% Similarity=0.022 Sum_probs=20.2
Q ss_pred ceEEEEecchhhHHHHHHHHHhcC
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G 25 (33)
+++.|+.+|.+.++++++.+...+
T Consensus 152 ~~v~i~~R~~~~a~~la~~~~~~~ 175 (283)
T 3jyo_A 152 QKLQVADLDTSRAQALADVINNAV 175 (283)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHhhc
Confidence 367889999999999999998653
No 359
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=33.95 E-value=58 Score=17.53 Aligned_cols=27 Identities=15% Similarity=0.073 Sum_probs=19.8
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
++++..++.+..+++.+.|.+.|.+..
T Consensus 33 ~V~~~~r~~~~~~~~~~~l~~~~~~~~ 59 (247)
T 2jah_A 33 AVAIAARRVEKLRALGDELTAAGAKVH 59 (247)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCcEE
Confidence 466777888888888888887765543
No 360
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=33.95 E-value=60 Score=17.69 Aligned_cols=28 Identities=4% Similarity=0.080 Sum_probs=20.0
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
++++..+.....+.+.+.|++.|.+..+
T Consensus 57 ~V~~~~r~~~~~~~~~~~l~~~~~~~~~ 84 (272)
T 1yb1_A 57 KLVLWDINKHGLEETAAKCKGLGAKVHT 84 (272)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEEcCHHHHHHHHHHHHhcCCeEEE
Confidence 4677778877788888888777655443
No 361
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=33.82 E-value=38 Score=18.60 Aligned_cols=24 Identities=13% Similarity=-0.015 Sum_probs=20.8
Q ss_pred eEEEEecchhhHHHHHHHHHhcCC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
.++||........++++.|.+.|.
T Consensus 153 ~t~vl~~~~~~~~~i~~~L~~~g~ 176 (239)
T 1va0_A 153 PTLVVLMGVGRRVWIAKELLRLGR 176 (239)
T ss_dssp SSEEEESCSTTHHHHHHHHHHTTC
T ss_pred CcEEEEccHHHHHHHHHHHHhcCC
Confidence 468888999999999999999864
No 362
>3ct8_A Protein BH2160, putative glyoxalase; NP_243026.1, glyoxalase/bleomycin resis protein/dioxygenase superfamily, structural genomics; HET: UNL; 2.10A {Bacillus halodurans c-125}
Probab=33.79 E-value=45 Score=16.41 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=17.4
Q ss_pred ecchhhHHHHHHHHHhcCCce
Q psy8719 8 CRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~~~ 28 (33)
+.+.++.+.+.+.|.++|...
T Consensus 94 v~~~~dv~~~~~~l~~~G~~~ 114 (146)
T 3ct8_A 94 AASREKVDELTQKLKERGDPI 114 (146)
T ss_dssp CSCHHHHHHHHHHHHHHTCCB
T ss_pred CCCHHHHHHHHHHHHHcCCcc
Confidence 457789999999999998754
No 363
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=33.57 E-value=34 Score=19.22 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=20.5
Q ss_pred EEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
|-++.......++++|.+.|++.+-+.
T Consensus 169 V~~D~~~~~~~a~~~L~~~G~r~I~~i 195 (366)
T 3h5t_A 169 IAPNNRKAIAPAAQALIDAGHRKIGIL 195 (366)
T ss_dssp EEECHHHHTHHHHHHHHHTTCCSEEEE
T ss_pred EEeChHHHHHHHHHHHHHCCCCcEEEE
Confidence 556667778888888888888876553
No 364
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=33.49 E-value=34 Score=19.05 Aligned_cols=28 Identities=7% Similarity=0.081 Sum_probs=20.0
Q ss_pred EEEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
-|-++.......++++|.+.|++.+-|.
T Consensus 164 ~V~~D~~~~~~~a~~~L~~~G~~~I~~i 191 (344)
T 3kjx_A 164 MVGISHRRAGREMAQAILKAGYRRIGFM 191 (344)
T ss_dssp EEEECHHHHHHHHHHHHHHHTCCSCCEE
T ss_pred EEEECcHHHHHHHHHHHHHCCCCeEEEE
Confidence 3556667777888888888888766543
No 365
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=33.46 E-value=50 Score=21.92 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.3
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCC
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
.++||-+.|...++++.+.|.+.|.
T Consensus 405 ~~ILv~a~tn~A~d~l~~rL~~~g~ 429 (802)
T 2xzl_A 405 DRILVCAPSNVAVDHLAAKLRDLGL 429 (802)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHTTC
T ss_pred CeEEEEcCcHHHHHHHHHHHHhhCc
Confidence 4789999999999999999998764
No 366
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=33.10 E-value=53 Score=20.93 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.2
Q ss_pred ceEEEEecchhhHHHHHHHHHhc
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSI 24 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~ 24 (33)
.++||.++|+..++.+.+.|...
T Consensus 52 ~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 52 LKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHHH
Confidence 47899999999999999988764
No 367
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=33.01 E-value=57 Score=17.17 Aligned_cols=27 Identities=7% Similarity=-0.053 Sum_probs=19.8
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
++++.++.....+.+.+.|...|.+..
T Consensus 31 ~V~~~~r~~~~~~~~~~~l~~~~~~~~ 57 (276)
T 1wma_A 31 DVVLTARDVTRGQAAVQQLQAEGLSPR 57 (276)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTCCCE
T ss_pred eEEEEeCChHHHHHHHHHHHhcCCeeE
Confidence 467788888888888888877665443
No 368
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=32.88 E-value=65 Score=17.81 Aligned_cols=28 Identities=0% Similarity=-0.089 Sum_probs=21.1
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
++++..+.....+.+.+.+.+.|.+..+
T Consensus 59 ~V~~~~r~~~~~~~~~~~~~~~~~~~~~ 86 (275)
T 4imr_A 59 HVILHGVKPGSTAAVQQRIIASGGTAQE 86 (275)
T ss_dssp EEEEEESSTTTTHHHHHHHHHTTCCEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHhcCCeEEE
Confidence 5677788888888888888877765543
No 369
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=32.73 E-value=45 Score=17.88 Aligned_cols=26 Identities=8% Similarity=0.005 Sum_probs=17.4
Q ss_pred EEecchhhHHHHHHHHHhcCCceeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
|-++.......++++|.+.|++.+-+
T Consensus 104 V~~D~~~~g~~a~~~L~~~G~~~I~~ 129 (285)
T 3c3k_A 104 VSIDDVAASEYVVDQLVKSGKKRIAL 129 (285)
T ss_dssp EECCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred EEEChHHHHHHHHHHHHHcCCCeEEE
Confidence 34455566777778888878776544
No 370
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=32.69 E-value=57 Score=20.11 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.3
Q ss_pred ceEEEEecchhhHHHHHHHHHhcC
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G 25 (33)
.++||-++|+..++.+.+.+...+
T Consensus 48 ~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 48 PKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CeEEEEcCCHHHHHHHHHHHHHHh
Confidence 479999999999999999998763
No 371
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=32.69 E-value=65 Score=17.76 Aligned_cols=27 Identities=4% Similarity=-0.073 Sum_probs=21.3
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
++++..+.....+++.+.|.+.|.+..
T Consensus 54 ~V~~~~r~~~~~~~~~~~~~~~~~~~~ 80 (270)
T 3ftp_A 54 MVIGTATTEAGAEGIGAAFKQAGLEGR 80 (270)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTCCCE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCcEE
Confidence 577888888889999998888776543
No 372
>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1
Probab=32.65 E-value=35 Score=17.03 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHhcCCce
Q psy8719 11 KLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 11 K~~ad~La~~L~~~G~~~ 28 (33)
...+|.|++.+...|+.-
T Consensus 47 ~~had~laeri~~lGg~p 64 (142)
T 1ji5_A 47 ATHIDEIAERILAIGGKP 64 (142)
T ss_dssp HHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHCCCCC
Confidence 467899999999999853
No 373
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=32.48 E-value=65 Score=17.69 Aligned_cols=28 Identities=11% Similarity=0.070 Sum_probs=21.4
Q ss_pred eEEEEecch--------hhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTK--------LDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK--------~~ad~La~~L~~~G~~~~~ 30 (33)
++=||+..+ +.|.+|++.|.++|....|
T Consensus 15 ~VaV~Gs~~~g~~~~~~~~A~~lg~~La~~g~~lVs 50 (176)
T 2iz6_A 15 IIGVMGPGKADTAENQLVMANELGKQIATHGWILLT 50 (176)
T ss_dssp EEEEECCCGGGCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 344677655 5789999999999987765
No 374
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=32.27 E-value=34 Score=18.14 Aligned_cols=26 Identities=4% Similarity=-0.147 Sum_probs=15.7
Q ss_pred EEecchhhHHHHHHHHHhcCCceeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
|-++.......++++|.+.|++.+-+
T Consensus 102 V~~D~~~~g~~a~~~L~~~G~~~i~~ 127 (277)
T 3e61_A 102 ISTNHFKGGQLQAEVVRKGKGKNVLI 127 (277)
T ss_dssp ----HHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEechHHHHHHHHHHHHHCCCCeEEE
Confidence 33445566777788888888776544
No 375
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=32.26 E-value=58 Score=17.02 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=22.9
Q ss_pred EEEEecchhhHHHHHHHHHhc----CCceeeee
Q psy8719 4 ALIFCRTKLDCDNLERYLNSI----DRRLIYYF 32 (33)
Q Consensus 4 aIVF~nTK~~ad~La~~L~~~----G~~~~~~~ 32 (33)
.-|-++.......++++|.+. |++.+-++
T Consensus 101 ~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i 133 (276)
T 3ksm_A 101 GLVATDNYAAGQLAARALLATLDLSKERNIALL 133 (276)
T ss_dssp EEEECCHHHHHHHHHHHHHHHSCTTSCEEEEEC
T ss_pred eEEccCHHHHHHHHHHHHHHhcCcCCCceEEEE
Confidence 346677788889999999998 88877654
No 376
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=32.25 E-value=44 Score=18.03 Aligned_cols=24 Identities=17% Similarity=0.093 Sum_probs=20.5
Q ss_pred eEEEEecchhhHHHHHHHHHhcCC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
.++||....+...++++.|.+.|.
T Consensus 170 ~t~vl~~~~~~~~~i~~~L~~~g~ 193 (232)
T 2qbu_A 170 DACVIMKTSRHGRRAMEVVESDPR 193 (232)
T ss_dssp SEEEESSHHHHHHHHHHHHHHSSS
T ss_pred CeEEEEcccCcHHHHHHHHHhcCC
Confidence 578888888899999999998874
No 377
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=32.12 E-value=58 Score=18.13 Aligned_cols=28 Identities=7% Similarity=0.009 Sum_probs=20.3
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
++++..++.+..+++.+.|.+.|.+..+
T Consensus 34 ~V~~~~r~~~~~~~~~~~~~~~~~~~~~ 61 (280)
T 3tox_A 34 KVVVTARNGNALAELTDEIAGGGGEAAA 61 (280)
T ss_dssp EEEECCSCHHHHHHHHHHHTTTTCCEEE
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCcEEE
Confidence 4677778888888888888776665443
No 378
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*
Probab=32.10 E-value=62 Score=20.27 Aligned_cols=27 Identities=11% Similarity=-0.049 Sum_probs=23.6
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
.+||++.+.+++..+.+..+++|..+.
T Consensus 36 ~~vv~P~s~~dV~~~v~~a~~~~~~v~ 62 (501)
T 3pop_A 36 EEFFLPATPDDVVASLQKAVTEGRGVA 62 (501)
T ss_dssp SEEEECSSHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCeEE
Confidence 589999999999999999998887653
No 379
>2kjz_A ATC0852; protein of unknown function, dimer, structural genomics, PSI protein structure initiative; NMR {Agrobacterium tumefaciens}
Probab=32.01 E-value=50 Score=16.24 Aligned_cols=21 Identities=5% Similarity=-0.051 Sum_probs=17.2
Q ss_pred ecchhhHHHHHHHHHhcCCce
Q psy8719 8 CRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~~~ 28 (33)
+.+.++.+.+.+.|.+.|...
T Consensus 94 v~d~~dv~~~~~~l~~~G~~~ 114 (144)
T 2kjz_A 94 VENDAQVDETFAGWKASGVAM 114 (144)
T ss_dssp CSSHHHHHHHHHHHHHTTCCC
T ss_pred eCCHHHHHHHHHHHHHCCCeE
Confidence 456678999999999998754
No 380
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=31.86 E-value=53 Score=20.19 Aligned_cols=27 Identities=7% Similarity=-0.173 Sum_probs=23.8
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
.+||++.+-+++..+.+..+++|.+++
T Consensus 54 ~~vv~p~~~~~v~~~v~~a~~~~~~~~ 80 (500)
T 3tsh_A 54 LYIITPTQVSHIQSAVVCGRRHSVRIR 80 (500)
T ss_dssp SEEECCSSHHHHHHHHHHHHHTTCEEE
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCcEE
Confidence 589999999999999999999887654
No 381
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=31.52 E-value=61 Score=17.64 Aligned_cols=27 Identities=7% Similarity=-0.005 Sum_probs=21.3
Q ss_pred ceEEEEecchhh------HHHHHHHHHhcCCce
Q psy8719 2 DRALIFCRTKLD------CDNLERYLNSIDRRL 28 (33)
Q Consensus 2 ~~aIVF~nTK~~------ad~La~~L~~~G~~~ 28 (33)
.++|.|+++|-+ |-+||..|.+.|.+-
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~V 50 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKV 50 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCE
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 468889999875 577999999888654
No 382
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=31.46 E-value=45 Score=18.69 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=19.2
Q ss_pred EEecchhhHHHHHHHHHhcCCceeeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYYF 32 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~~ 32 (33)
|-++....+..++++|.+.|++.+-+.
T Consensus 167 V~~D~~~~~~~a~~~L~~~G~r~I~~i 193 (355)
T 3e3m_A 167 VGFSNERAAYDMTNALLARGFRKIVFL 193 (355)
T ss_dssp EECCHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEeChHHHHHHHHHHHHHCCCCeEEEE
Confidence 445566777788888888888776553
No 383
>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31
Probab=31.26 E-value=33 Score=17.86 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=16.3
Q ss_pred ecchhhHHHHHHHHHhcCC
Q psy8719 8 CRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~ 26 (33)
+.++.+|.+|++.|-++|.
T Consensus 53 ~~sR~eAv~lgq~Ll~~G~ 71 (120)
T 1v3f_A 53 AASRLEAVTLASMLMEENF 71 (120)
T ss_dssp CSSHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 5789999999999988763
No 384
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=31.24 E-value=51 Score=18.98 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=18.7
Q ss_pred ceEEEEecchhhHHHHHHHHHh
Q psy8719 2 DRALIFCRTKLDCDNLERYLNS 23 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~ 23 (33)
.++.|+.+|.+.++++++.+..
T Consensus 145 ~~v~i~~R~~~~a~~la~~~~~ 166 (272)
T 3pwz_A 145 SELVIANRDMAKALALRNELDH 166 (272)
T ss_dssp SEEEEECSCHHHHHHHHHHHCC
T ss_pred CEEEEEeCCHHHHHHHHHHhcc
Confidence 4678899999999999998864
No 385
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=31.22 E-value=51 Score=19.42 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=20.6
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
-.|||+++.+-+.+|... .....+.|.
T Consensus 112 GLllla~d~~~~~~L~~~--~~~v~K~Y~ 138 (290)
T 3dh3_A 112 GLIFLTNHGDLVNKILRA--GNDHEKEYL 138 (290)
T ss_dssp EEEEEESCTTHHHHHHCG--GGCCCEEEE
T ss_pred ceEEEcCCHHHHHHHHHh--hCCcCEEEE
Confidence 468999999888887763 566777775
No 386
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=30.97 E-value=49 Score=17.57 Aligned_cols=27 Identities=15% Similarity=-0.042 Sum_probs=18.2
Q ss_pred EEEecchhhHHHHHHHHHhcCC--ceeee
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDR--RLIYY 31 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~--~~~~~ 31 (33)
-|-++.......++++|.+.|+ +.+-+
T Consensus 112 ~V~~D~~~~g~~a~~~l~~~g~~~~~i~~ 140 (304)
T 3gbv_A 112 FFGQNSHQSGYFAARMLMLLAVNDREIVI 140 (304)
T ss_dssp EEECCHHHHHHHHHHHHHHHSTTCSEEEE
T ss_pred EEecChHHHHHHHHHHHHHHhCCCCeEEE
Confidence 3455666677777888888777 65544
No 387
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=30.95 E-value=49 Score=17.77 Aligned_cols=27 Identities=4% Similarity=-0.130 Sum_probs=18.5
Q ss_pred EEecchhhHHHHHHHHHhc--CCceeeee
Q psy8719 6 IFCRTKLDCDNLERYLNSI--DRRLIYYF 32 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~--G~~~~~~~ 32 (33)
|-++.......++++|.+. |++.+-++
T Consensus 105 V~~d~~~~g~~~~~~l~~~~~g~~~i~~i 133 (305)
T 3g1w_A 105 LGTNNYNAGMNAAYKMAELLDGEGEVAVI 133 (305)
T ss_dssp EECCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred ECcCHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4555666777778888887 77766543
No 388
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=30.92 E-value=77 Score=20.33 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=18.6
Q ss_pred eEEEEec-chhhHHHHHHHHHhc
Q psy8719 3 RALIFCR-TKLDCDNLERYLNSI 24 (33)
Q Consensus 3 ~aIVF~n-TK~~ad~La~~L~~~ 24 (33)
.||.|++ |.+..+.|++.|+..
T Consensus 69 ~aIyfv~Pt~~ni~~i~~d~~~~ 91 (650)
T 2xhe_A 69 HGVYFIEPTEENLDYVIRDFADR 91 (650)
T ss_dssp EEEEEECSCHHHHHHHHHHHHSS
T ss_pred CEEEEEcCCHHHHHHHHHHHhhc
Confidence 5788887 888899999999874
No 389
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=30.86 E-value=68 Score=19.01 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=19.4
Q ss_pred ceEEEEecc---hhhHHHHHHHHHhcC
Q psy8719 2 DRALIFCRT---KLDCDNLERYLNSID 25 (33)
Q Consensus 2 ~~aIVF~nT---K~~ad~La~~L~~~G 25 (33)
+++.|+.|| .+.++++++.+....
T Consensus 179 ~~V~i~nR~~~~~~~a~~la~~~~~~~ 205 (315)
T 3tnl_A 179 KEISIFNRKDDFYANAEKTVEKINSKT 205 (315)
T ss_dssp SEEEEEECSSTTHHHHHHHHHHHHHHS
T ss_pred CEEEEEECCCchHHHHHHHHHHhhhhc
Confidence 367888999 889999999887653
No 390
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=30.81 E-value=58 Score=18.23 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=18.1
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCc
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~ 27 (33)
.++.++...+ ++++.+.|++.|.+
T Consensus 286 ~v~~l~~~~~-~~~~~~~l~~~g~~ 309 (317)
T 1kkh_A 286 CVIILVNEEK-EKELLKELNKEDVR 309 (317)
T ss_dssp EEEEECCGGG-HHHHHHHHHTSSCE
T ss_pred EEEEEechhh-HHHHHHHHHhcCCE
Confidence 4567776655 99999999987743
No 391
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus}
Probab=30.77 E-value=61 Score=20.23 Aligned_cols=27 Identities=7% Similarity=0.010 Sum_probs=23.3
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
.+||++.+.+++..+.+..+++|..+.
T Consensus 57 ~~vv~p~s~~dv~~~v~~a~~~~~~~~ 83 (521)
T 2ipi_A 57 DVVYVVHTADQVVDAVNQAMAAGQRIA 83 (521)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHTCCEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHcCCeEE
Confidence 589999999999999999998876553
No 392
>3rhe_A NAD-dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, SGX; 2.05A {Legionella pneumophila}
Probab=30.76 E-value=55 Score=16.28 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=17.7
Q ss_pred ecchhhHHHHHHHHHhcCCce
Q psy8719 8 CRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~~~ 28 (33)
+...++.+.+.+.|.+.|...
T Consensus 75 v~d~~dvd~~~~~l~~~G~~i 95 (148)
T 3rhe_A 75 VNSNEMVDEIHRQWSDKEISI 95 (148)
T ss_dssp CSCHHHHHHHHHHHHHTTCCE
T ss_pred cCCHHHHHHHHHHHHhCCCEE
Confidence 455688999999999999875
No 393
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=30.72 E-value=67 Score=17.27 Aligned_cols=26 Identities=8% Similarity=-0.068 Sum_probs=19.9
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCce
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
++++..++....+++.+.|.+.+...
T Consensus 49 ~V~~~~r~~~~~~~~~~~l~~~~~~~ 74 (266)
T 3o38_A 49 DVVISDYHERRLGETRDQLADLGLGR 74 (266)
T ss_dssp EEEEEESCHHHHHHHHHHHHTTCSSC
T ss_pred EEEEecCCHHHHHHHHHHHHhcCCCc
Confidence 56778888888888888887776433
No 394
>3dnj_A ATP-dependent CLP protease adapter protein CLPS; adaptor, protein-peptide complex, peptide binding protein; 1.15A {Caulobacter vibrioides} SCOP: d.45.1.2 PDB: 3g19_A 3gq0_A 3gq1_A 3gw1_A 3g1b_A 3g3p_A*
Probab=30.61 E-value=56 Score=16.36 Aligned_cols=20 Identities=5% Similarity=-0.227 Sum_probs=15.8
Q ss_pred ceEEEEecchhhHHHHHHHH
Q psy8719 2 DRALIFCRTKLDCDNLERYL 21 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L 21 (33)
++++|.+-+++.|+.-++.+
T Consensus 48 G~avv~~~~~e~AE~k~~q~ 67 (85)
T 3dnj_A 48 GVGVCGVYTYEVAETKVAQV 67 (85)
T ss_dssp SEEEEEEECHHHHHHHHHHH
T ss_pred CcEEEEEecHHHHHHHHHHH
Confidence 46788888888888877777
No 395
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=30.56 E-value=39 Score=14.51 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHhcCCc
Q psy8719 12 LDCDNLERYLNSIDRR 27 (33)
Q Consensus 12 ~~ad~La~~L~~~G~~ 27 (33)
-.+++|++.|++.|.+
T Consensus 20 ~t~~el~~~l~~~~~~ 35 (64)
T 2p5k_A 20 ETQDELVDMLKQDGYK 35 (64)
T ss_dssp CSHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHhCCC
Confidence 3577888888776654
No 396
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=30.50 E-value=42 Score=18.68 Aligned_cols=28 Identities=14% Similarity=0.038 Sum_probs=21.6
Q ss_pred CceEEEEecchhh------HHHHHHHHHhcCCce
Q psy8719 1 MDRALIFCRTKLD------CDNLERYLNSIDRRL 28 (33)
Q Consensus 1 ~~~aIVF~nTK~~------ad~La~~L~~~G~~~ 28 (33)
|.++|.|+++|-+ +-.||..|.+.|.+-
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~V 36 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKV 36 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCE
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcE
Confidence 3468899998864 688999999888654
No 397
>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A
Probab=30.49 E-value=50 Score=15.70 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=15.6
Q ss_pred EEEecchhhHHHHHHHHHh
Q psy8719 5 LIFCRTKLDCDNLERYLNS 23 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~ 23 (33)
-|++.++..|+++.+.|++
T Consensus 8 hIl~~~~~~A~~i~~~l~~ 26 (92)
T 1jns_A 8 HILVKEEKLALDLLEQIKN 26 (92)
T ss_dssp EEEESSHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHC
Confidence 4667889999999999874
No 398
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}
Probab=30.46 E-value=68 Score=17.28 Aligned_cols=27 Identities=11% Similarity=0.019 Sum_probs=19.6
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
++++..+.....+.+.+.|+..|.+..
T Consensus 31 ~V~~~~r~~~~~~~~~~~~~~~~~~~~ 57 (260)
T 2qq5_A 31 TVYITGRHLDTLRVVAQEAQSLGGQCV 57 (260)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHSSEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCceE
Confidence 466777888888888888877765543
No 399
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=30.45 E-value=69 Score=17.67 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=18.7
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCc
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~ 27 (33)
.++.++ .++.++++.+.|++.+.+
T Consensus 260 ~v~~l~-~~~~~~~~~~~l~~~~~~ 283 (296)
T 1h72_C 260 SIIAFP-KEEFIDEVENILRDYYEN 283 (296)
T ss_dssp CEEEEE-CGGGHHHHHHHHHHHCSC
T ss_pred heEEEe-cHHHHHHHHHHHHHhccC
Confidence 356677 688899999999987654
No 400
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae}
Probab=30.44 E-value=54 Score=18.62 Aligned_cols=17 Identities=12% Similarity=-0.117 Sum_probs=9.8
Q ss_pred hHHHHHHHHHhcCCcee
Q psy8719 13 DCDNLERYLNSIDRRLI 29 (33)
Q Consensus 13 ~ad~La~~L~~~G~~~~ 29 (33)
+...+.+.|.+.|.+.+
T Consensus 175 dl~~~l~~L~~~g~~~v 191 (270)
T 2p4g_A 175 PLKIAFDALHARRLKKI 191 (270)
T ss_dssp HHHHHHHHHHTTTCCEE
T ss_pred CHHHHHHHHHHCCCCEE
Confidence 34556666666665543
No 401
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A*
Probab=30.32 E-value=70 Score=19.74 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=23.1
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCce
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
.+||++.+.+++.++.+..+++|..+
T Consensus 38 ~~vv~P~s~~dv~~~v~~a~~~~~~v 63 (473)
T 3rja_A 38 TAIAQTQTTAHIQSAVQCAKKLNLKV 63 (473)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCeE
Confidence 58999999999999999999887654
No 402
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=30.31 E-value=41 Score=18.10 Aligned_cols=25 Identities=8% Similarity=-0.102 Sum_probs=15.8
Q ss_pred EecchhhHHHHHHHHHhcCCceeee
Q psy8719 7 FCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 7 F~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
-++.......++++|.+.|++.+-+
T Consensus 109 ~~D~~~~g~~a~~~L~~~G~~~I~~ 133 (290)
T 2rgy_A 109 CPDHRRGGELAAATLIEHGHRKLAV 133 (290)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCSEEE
T ss_pred EeCcHHHHHHHHHHHHHCCCceEEE
Confidence 3444556667777777777766544
No 403
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=29.94 E-value=51 Score=18.46 Aligned_cols=26 Identities=12% Similarity=-0.033 Sum_probs=17.6
Q ss_pred EEecchhhHHHHHHHHHhcCCceeee
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~~~~~ 31 (33)
|-++........+++|.+.|++.+-+
T Consensus 159 V~~d~~~~~~~a~~~L~~~G~~~I~~ 184 (349)
T 1jye_A 159 IIFSHEDGTRLGVEHLVALGHQQIAL 184 (349)
T ss_dssp EEECHHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEEchHHHHHHHHHHHHHCCCCEEEE
Confidence 44455666777778888888776654
No 404
>2zfh_A CUTA; human brain, trimeric structure, structural genomics; 2.05A {Homo sapiens} SCOP: d.58.5.2 PDB: 1xk8_A
Probab=29.94 E-value=71 Score=18.35 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=16.7
Q ss_pred EEEE--ecchhhHHHHHHHHHhcC
Q psy8719 4 ALIF--CRTKLDCDNLERYLNSID 25 (33)
Q Consensus 4 aIVF--~nTK~~ad~La~~L~~~G 25 (33)
+||+ |.+++.|++|++.|-+.+
T Consensus 69 ilV~tT~pd~e~A~~IAr~LVE~r 92 (179)
T 2zfh_A 69 SAAFVTCPNEKVAKEIARAVVEKR 92 (179)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHTT
T ss_pred EEEEEecCCHHHHHHHHHHHHhcC
Confidence 3454 566789999999998765
No 405
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1
Probab=29.82 E-value=40 Score=17.41 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=15.8
Q ss_pred chhhHHHHHHHHHh--------cCCceeee
Q psy8719 10 TKLDCDNLERYLNS--------IDRRLIYY 31 (33)
Q Consensus 10 TK~~ad~La~~L~~--------~G~~~~~~ 31 (33)
|.++.+.|+.+|.. -|++++||
T Consensus 134 sd~ei~~laaYl~sl~~~~~~~w~~g~~~~ 163 (163)
T 1w5c_T 134 TEKDLVAIAGHILVEPKILGDKWGGGKVYY 163 (163)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGGTTCSSCC
T ss_pred CHHHHHHHHHHHHHcccccCCCCCCCcccC
Confidence 67888899999853 34566665
No 406
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=29.78 E-value=26 Score=21.34 Aligned_cols=21 Identities=5% Similarity=-0.287 Sum_probs=18.1
Q ss_pred ecchhhHHHHHHHHHhcCCce
Q psy8719 8 CRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~~~ 28 (33)
-||+.-|+.+++.|.+.|..-
T Consensus 277 GnTe~mA~~ia~gl~~~Gv~~ 297 (410)
T 4dik_A 277 GFVENVMKKAIDSLKEKGFTP 297 (410)
T ss_dssp SHHHHHHHHHHHHHHHTTCEE
T ss_pred ChHHHHHHHHHHHHHhcCCce
Confidence 378999999999999999764
No 407
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=29.72 E-value=61 Score=20.30 Aligned_cols=29 Identities=10% Similarity=-0.087 Sum_probs=21.1
Q ss_pred eEEEEec-chhhHHHHHHHHHhc--CCceeee
Q psy8719 3 RALIFCR-TKLDCDNLERYLNSI--DRRLIYY 31 (33)
Q Consensus 3 ~aIVF~n-TK~~ad~La~~L~~~--G~~~~~~ 31 (33)
.||.|++ |.+..+.|++.|++. +.-..||
T Consensus 69 ~aIy~v~Pt~~ni~~i~~d~~~~~~~~y~~~~ 100 (591)
T 1epu_A 69 EAVYLITPTEESVKCLMADFQNPDNPQYRGAH 100 (591)
T ss_dssp EEEEEECCCHHHHHHHHHHTSSTTSCSEEEEE
T ss_pred CeEEEecCCHHHHHHHHHHHhhcccccCCeEE
Confidence 5778877 888899999999862 4444444
No 408
>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A
Probab=29.44 E-value=18 Score=18.31 Aligned_cols=29 Identities=10% Similarity=0.199 Sum_probs=17.3
Q ss_pred eEEEEecchhhHHHH------HHHHH--hcCCceeee
Q psy8719 3 RALIFCRTKLDCDNL------ERYLN--SIDRRLIYY 31 (33)
Q Consensus 3 ~aIVF~nTK~~ad~L------a~~L~--~~G~~~~~~ 31 (33)
.+||+|++-..+... +..|+ +.|....|.
T Consensus 80 ~iVvyc~~g~~s~~a~~~~~~~~~L~~l~~G~~~v~~ 116 (153)
T 2vsw_A 80 KVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHL 116 (153)
T ss_dssp EEEEECSSCCCGGGSCTTSHHHHHHHHHHHHCSCEEE
T ss_pred eEEEEeCCCCcccccccchHHHHHHHHHHhCCCcEEE
Confidence 578899876554333 35555 337665554
No 409
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=29.35 E-value=79 Score=17.66 Aligned_cols=28 Identities=7% Similarity=-0.162 Sum_probs=21.3
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
++++..+.....+++.+.|.+.|.+..+
T Consensus 57 ~V~~~~r~~~~~~~~~~~l~~~~~~~~~ 84 (301)
T 3tjr_A 57 RLVLSDVDQPALEQAVNGLRGQGFDAHG 84 (301)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCceEE
Confidence 4677788888888888888887765543
No 410
>1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=29.01 E-value=34 Score=18.15 Aligned_cols=22 Identities=9% Similarity=-0.148 Sum_probs=18.9
Q ss_pred EEecchhhHHHHHHHHHhcCCc
Q psy8719 6 IFCRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~~G~~ 27 (33)
..++|++-|.++-++|...+..
T Consensus 25 ~~lDTk~I~~~ikewL~~~~is 46 (111)
T 1wh8_A 25 PELDTYSITKRVKEVLTDNNLG 46 (111)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCC
T ss_pred ccCCHHHHHHHHHHHHHHCCCc
Confidence 4689999999999999988754
No 411
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=29.00 E-value=47 Score=14.98 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=21.4
Q ss_pred ceEEEEecch-hhHHHHHHHHHhcCCceee
Q psy8719 2 DRALIFCRTK-LDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 2 ~~aIVF~nTK-~~ad~La~~L~~~G~~~~~ 30 (33)
...++|.... -.|.++...|.+.|..+.+
T Consensus 6 ~~v~ly~~~~C~~C~~~~~~L~~~~i~~~~ 35 (92)
T 2khp_A 6 VDVIIYTRPGCPYCARAKALLARKGAEFNE 35 (92)
T ss_dssp CCEEEEECTTCHHHHHHHHHHHHTTCCCEE
T ss_pred ccEEEEECCCChhHHHHHHHHHHcCCCcEE
Confidence 4567887554 6899999999998866543
No 412
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=28.98 E-value=37 Score=19.58 Aligned_cols=19 Identities=0% Similarity=0.128 Sum_probs=14.6
Q ss_pred EEEEecchhhHHHHHHHHH
Q psy8719 4 ALIFCRTKLDCDNLERYLN 22 (33)
Q Consensus 4 aIVF~nTK~~ad~La~~L~ 22 (33)
-|.|+.||..+.++.....
T Consensus 70 ~iLfVgTk~~~~~~V~~~A 88 (208)
T 1vi6_A 70 KILLVAARQYAHKPVQMFS 88 (208)
T ss_dssp GEEEEECSGGGHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHH
Confidence 4789999999987665544
No 413
>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1
Probab=28.96 E-value=43 Score=16.84 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHhcCCce
Q psy8719 11 KLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 11 K~~ad~La~~L~~~G~~~ 28 (33)
...+|.|++.+...|+.-
T Consensus 51 ~~had~laeri~~lGg~p 68 (146)
T 1jig_A 51 GTYIDELAERILALEGKP 68 (146)
T ss_dssp HHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHCCCCC
Confidence 357899999999998753
No 414
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=28.95 E-value=70 Score=16.96 Aligned_cols=23 Identities=9% Similarity=0.042 Sum_probs=19.6
Q ss_pred eEEEEecchhhHHHHHHHHHhcC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G 25 (33)
..++++.+....+++.+.|++.|
T Consensus 189 ~l~~~~~~~~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 189 FFVAYTPCSNQVMRLHEKLREFK 211 (255)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTG
T ss_pred EEEEEECCHHHHHHHHHHHHHcC
Confidence 45677888999999999999988
No 415
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=28.02 E-value=74 Score=17.58 Aligned_cols=23 Identities=4% Similarity=-0.093 Sum_probs=18.2
Q ss_pred eEEEEecchhhHHHHHHHHHhcC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSID 25 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G 25 (33)
.+++++..+++++++.+.|++.+
T Consensus 236 ~v~~l~~~~~~~~~~~~~l~~~~ 258 (275)
T 1uek_A 236 AFFGLAEGPDHARRAAEALRAWG 258 (275)
T ss_dssp CEEEECSSHHHHHHHHHHHTTTS
T ss_pred CeEEEeCCHHHHHHHHHHhhhcc
Confidence 35677787778999999998765
No 416
>1mpy_A Catechol 2,3-dioxygenase; extradiol dioxygenase, non heme iron dioxygenase, metapyrocatechase, oxidoreductase; 2.80A {Pseudomonas putida} SCOP: d.32.1.3 d.32.1.3
Probab=28.02 E-value=55 Score=17.92 Aligned_cols=21 Identities=19% Similarity=0.075 Sum_probs=17.8
Q ss_pred ecchhhHHHHHHHHHhcCCce
Q psy8719 8 CRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~~~ 28 (33)
+.++++.+.+.+.|+++|...
T Consensus 72 v~~~~dv~~~~~~l~~~G~~~ 92 (307)
T 1mpy_A 72 VVDEDALRQLERDLMAYGCAV 92 (307)
T ss_dssp ESCHHHHHHHHHHHHHHTCCC
T ss_pred eCCHHHHHHHHHHHHHcCCce
Confidence 567799999999999998754
No 417
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Probab=27.98 E-value=72 Score=18.11 Aligned_cols=24 Identities=0% Similarity=-0.079 Sum_probs=19.9
Q ss_pred eEEEEecchhhHHHHHHHHHhcCC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
.++||....+...++++.|.+.|.
T Consensus 178 ~tlvl~~~~~~~~~i~~~L~~~g~ 201 (285)
T 1cbf_A 178 CTIALFLSSTLTKKVMKEFINAGW 201 (285)
T ss_dssp SEEEEESCTTCHHHHHHHHHHTTC
T ss_pred CeEEEECcHHHHHHHHHHHHhcCC
Confidence 578888888889999999988654
No 418
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=27.92 E-value=49 Score=17.55 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=14.9
Q ss_pred cchhhHHHHHHHHHhcCCce
Q psy8719 9 RTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 9 nTK~~ad~La~~L~~~G~~~ 28 (33)
.+-++.++|+..|.+.|-.+
T Consensus 83 P~~eDi~RV~arLaa~GWPl 102 (107)
T 3ol3_A 83 PTAEEINQVAARLASVGWPL 102 (107)
T ss_dssp CCHHHHHHHHHHHHTTTCCB
T ss_pred cCHHHHHHHHHHHHhcCCCC
Confidence 35677888888888887654
No 419
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=27.90 E-value=42 Score=18.19 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=16.5
Q ss_pred chhhHHHHHHHHHhcCCce
Q psy8719 10 TKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 10 TK~~ad~La~~L~~~G~~~ 28 (33)
+|++++.+-..|...|...
T Consensus 101 sKeeAE~iK~kLe~aGA~V 119 (122)
T 2zjq_5 101 AKDEAEKMKAQLEAAGARV 119 (122)
T ss_pred CHHHHHHHHHHHHHcCCEE
Confidence 6899999999999998753
No 420
>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1
Probab=27.82 E-value=46 Score=16.83 Aligned_cols=18 Identities=22% Similarity=0.084 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHhcCCce
Q psy8719 11 KLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 11 K~~ad~La~~L~~~G~~~ 28 (33)
...+|.|++.+...|+.-
T Consensus 54 ~~had~laeri~~lGg~p 71 (149)
T 1n1q_A 54 SGHIDTLAERVLSIGGSP 71 (149)
T ss_dssp HHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHCCCCC
Confidence 357899999999998753
No 421
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=27.73 E-value=69 Score=16.50 Aligned_cols=27 Identities=4% Similarity=-0.055 Sum_probs=22.8
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCce
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
.++||.-.|----..|++.|.+.|...
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~~V 31 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGFEV 31 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTCEE
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEE
Confidence 468888888888899999999988654
No 422
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A*
Probab=27.73 E-value=74 Score=19.90 Aligned_cols=27 Identities=4% Similarity=0.011 Sum_probs=23.1
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
.+||++.+.+++..+.+..+++|..+.
T Consensus 59 ~~vv~p~s~~dv~~~v~~a~~~~~~~~ 85 (523)
T 2wdx_A 59 DYIHLVGSTQQVADAVEETVRTGKRVA 85 (523)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHTCCEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCcEE
Confidence 589999999999999999988876553
No 423
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A*
Probab=27.69 E-value=81 Score=19.80 Aligned_cols=27 Identities=4% Similarity=0.089 Sum_probs=23.2
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
.+||++.+.+++..+.+..+++|..+.
T Consensus 60 ~~vv~p~s~~dv~~~v~~a~~~~~~v~ 86 (530)
T 2y3s_A 60 EEIHLVGSAAEIEQVLSRAVRSGKRVA 86 (530)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEecCCHHHHHHHHHHHHHcCCcEE
Confidence 579999999999999999998876653
No 424
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=27.59 E-value=43 Score=18.21 Aligned_cols=19 Identities=11% Similarity=0.403 Sum_probs=16.6
Q ss_pred chhhHHHHHHHHHhcCCce
Q psy8719 10 TKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 10 TK~~ad~La~~L~~~G~~~ 28 (33)
+|++++.+-..|...|...
T Consensus 104 sKeeAE~iK~kLe~aGA~V 122 (125)
T 2j01_L 104 SKQEAEEIKKKLEAVGAVV 122 (125)
T ss_pred CHHHHHHHHHHHHHcCCEE
Confidence 6899999999999998753
No 425
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Probab=27.57 E-value=64 Score=18.51 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=17.4
Q ss_pred ceEEEEecchhhHHHHHHHHH
Q psy8719 2 DRALIFCRTKLDCDNLERYLN 22 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~ 22 (33)
.++.|+-||.+.+++|++.+.
T Consensus 144 ~~i~v~nRt~~ka~~la~~~~ 164 (271)
T 1npy_A 144 EKLKIYARNVKTGQYLAALYG 164 (271)
T ss_dssp CCEEEECSCHHHHHHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHHcC
Confidence 467888999999999998773
No 426
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=27.53 E-value=60 Score=19.88 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=22.3
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCc
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~ 27 (33)
.+++||....+...++++.|.+.|..
T Consensus 375 ~~t~Vl~~~~~~~~~i~~~L~~~g~~ 400 (457)
T 1pjq_A 375 KQTLVFYMGLNQAATIQEKLIAFGMQ 400 (457)
T ss_dssp SEEEEESSCSSSHHHHHHHHHHTTCC
T ss_pred CCeEEEEcchhhHHHHHHHHHhcCCC
Confidence 46889999999999999999998753
No 427
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}
Probab=27.52 E-value=57 Score=15.44 Aligned_cols=24 Identities=13% Similarity=-0.010 Sum_probs=19.3
Q ss_pred EEEecchhhHHHHHHHHHhcCCce
Q psy8719 5 LIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 5 IVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
|.|.=..++.+.+.+.|+++|...
T Consensus 100 ~~~~v~~~d~~~~~~~l~~~G~~~ 123 (156)
T 3kol_A 100 LAFDIDPQLFDRAVTVIGENKIAI 123 (156)
T ss_dssp EEEECCGGGHHHHHHHHHHTTCCE
T ss_pred EEEEecHHHHHHHHHHHHHCCCcc
Confidence 555336779999999999999875
No 428
>3oms_A PHNB protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, methyltransferase, GL family; 1.90A {Bacillus cereus} SCOP: d.32.1.0
Probab=27.38 E-value=70 Score=16.39 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=18.5
Q ss_pred EEEEecchhhHHHHHHHHHhcCCce
Q psy8719 4 ALIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 4 aIVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
..|-|...+++|++.+.|. .|+..
T Consensus 85 l~l~~~d~~evd~~~~~l~-~Gg~v 108 (138)
T 3oms_A 85 LYVTCETEEEIDTVFHKLA-QDGAI 108 (138)
T ss_dssp EEEEESSHHHHHHHHHHHH-TTCEE
T ss_pred EEEEcCCHHHHHHHHHHHH-cCCeE
Confidence 4566788889999999995 57654
No 429
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=27.32 E-value=83 Score=18.60 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=19.5
Q ss_pred ceEEEEecc---hhhHHHHHHHHHhcC
Q psy8719 2 DRALIFCRT---KLDCDNLERYLNSID 25 (33)
Q Consensus 2 ~~aIVF~nT---K~~ad~La~~L~~~G 25 (33)
+++.|+.|| .+.++++++.+....
T Consensus 173 ~~v~v~nRt~~~~~~a~~la~~~~~~~ 199 (312)
T 3t4e_A 173 KEIKLFNRKDDFFEKAVAFAKRVNENT 199 (312)
T ss_dssp SEEEEEECSSTHHHHHHHHHHHHHHHS
T ss_pred CEEEEEECCCchHHHHHHHHHHhhhcc
Confidence 467889999 888999999887643
No 430
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=27.27 E-value=38 Score=16.81 Aligned_cols=17 Identities=12% Similarity=0.272 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHhcCCc
Q psy8719 11 KLDCDNLERYLNSIDRR 27 (33)
Q Consensus 11 K~~ad~La~~L~~~G~~ 27 (33)
...|+.|.++|.+.|..
T Consensus 71 ~~RA~aV~~~L~~~Gv~ 87 (123)
T 3oon_A 71 EKRARAIGNYLIKMKVK 87 (123)
T ss_dssp HHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 46789999999998864
No 431
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=27.21 E-value=83 Score=17.23 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=20.1
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
++++-.++.+..+++++.+++.|....
T Consensus 34 ~Vvi~~r~~~~~~~~~~~~~~~~~~~~ 60 (256)
T 4fs3_A 34 KLVFTYRKERSRKELEKLLEQLNQPEA 60 (256)
T ss_dssp EEEEEESSGGGHHHHHHHHGGGTCSSC
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCcE
Confidence 456667777888889998888776543
No 432
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A
Probab=27.17 E-value=50 Score=16.59 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHhcCCc
Q psy8719 11 KLDCDNLERYLNSIDRR 27 (33)
Q Consensus 11 K~~ad~La~~L~~~G~~ 27 (33)
+..++.+++.+...|+.
T Consensus 52 ~~had~l~eri~~lGg~ 68 (154)
T 3r2k_A 52 TQHADALLRRILLLEGT 68 (154)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 56789999999999875
No 433
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=27.14 E-value=38 Score=19.72 Aligned_cols=20 Identities=10% Similarity=0.086 Sum_probs=14.9
Q ss_pred eEEEEecchhhHHHHHHHHH
Q psy8719 3 RALIFCRTKLDCDNLERYLN 22 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~ 22 (33)
.-|.|+.||..+.++.....
T Consensus 65 ~~iLfVgTk~~~~~~V~~~A 84 (231)
T 3bbn_B 65 KQFLIVGTKNKAADSVARAA 84 (231)
T ss_dssp CCEEEECCCTTTHHHHHHHH
T ss_pred CEEEEEeCcHHHHHHHHHHH
Confidence 35889999999877665543
No 434
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0
Probab=26.99 E-value=49 Score=17.17 Aligned_cols=17 Identities=12% Similarity=0.071 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHhcCCc
Q psy8719 11 KLDCDNLERYLNSIDRR 27 (33)
Q Consensus 11 K~~ad~La~~L~~~G~~ 27 (33)
+..++.+++.+...|+.
T Consensus 51 ~~had~laeri~~lGg~ 67 (174)
T 2jd6_0 51 IGHALRFYNYIYDRNGR 67 (174)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 46789999999999875
No 435
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=26.94 E-value=76 Score=16.67 Aligned_cols=27 Identities=0% Similarity=0.001 Sum_probs=19.4
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
++++..+.....+.+.+.|...|.+..
T Consensus 37 ~V~~~~r~~~~~~~~~~~~~~~~~~~~ 63 (255)
T 1fmc_A 37 SVVVSDINADAANHVVDEIQQLGGQAF 63 (255)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEcCCHHHHHHHHHHHHHhCCceE
Confidence 467777887777888888877665543
No 436
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=26.89 E-value=77 Score=16.76 Aligned_cols=27 Identities=4% Similarity=0.043 Sum_probs=20.3
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
++++..+.....+++.+.+++.|.+..
T Consensus 31 ~v~~~~r~~~~~~~~~~~~~~~~~~~~ 57 (247)
T 3lyl_A 31 TVVGTATSQASAEKFENSMKEKGFKAR 57 (247)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCceE
Confidence 467777888888888888887776543
No 437
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*
Probab=26.83 E-value=89 Score=17.50 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=18.2
Q ss_pred eEEEEecchhhHHHHHHHHHhc
Q psy8719 3 RALIFCRTKLDCDNLERYLNSI 24 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~ 24 (33)
++.|+-+|.+.++++++.+...
T Consensus 144 ~v~v~~R~~~~a~~l~~~~~~~ 165 (272)
T 1p77_A 144 NIVLANRTFSKTKELAERFQPY 165 (272)
T ss_dssp EEEEEESSHHHHHHHHHHHGGG
T ss_pred EEEEEECCHHHHHHHHHHcccc
Confidence 5778889999999999888653
No 438
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Probab=26.80 E-value=46 Score=18.17 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=17.2
Q ss_pred cchhhHHHHHHHHHhcCCce
Q psy8719 9 RTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 9 nTK~~ad~La~~L~~~G~~~ 28 (33)
=+|++++.+-..|...|...
T Consensus 106 vsKeeAE~iK~kLe~aGA~V 125 (128)
T 1dd3_A 106 VSKEEAEEIKKKLEEAGAEV 125 (128)
T ss_dssp ECHHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHHHcCCEE
Confidence 36999999999999999753
No 439
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=26.76 E-value=78 Score=16.76 Aligned_cols=27 Identities=7% Similarity=-0.074 Sum_probs=17.1
Q ss_pred EEecchhhHHHHHHHHHh--cCCceeeee
Q psy8719 6 IFCRTKLDCDNLERYLNS--IDRRLIYYF 32 (33)
Q Consensus 6 VF~nTK~~ad~La~~L~~--~G~~~~~~~ 32 (33)
|-++.......++++|.+ .|++.+-++
T Consensus 103 V~~D~~~~g~~~~~~l~~~~~g~~~i~~i 131 (291)
T 3l49_A 103 TTSNNYSIGAELALQMVADLGGKGNVLVF 131 (291)
T ss_dssp EEECHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EecChHHHHHHHHHHHHHHcCCCceEEEE
Confidence 445556666777777777 677665543
No 440
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=26.56 E-value=81 Score=16.91 Aligned_cols=27 Identities=7% Similarity=0.027 Sum_probs=19.1
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
++++..++....+++.+.|...|.+..
T Consensus 28 ~V~~~~r~~~~~~~~~~~~~~~~~~~~ 54 (256)
T 1geg_A 28 AVAIADYNDATAKAVASEINQAGGHAV 54 (256)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCcEE
Confidence 466777777778888888877665443
No 441
>2o4a_A DNA-binding protein SATB1; protein-DNA complex, transcription, transcription/DNA complex; HET: DNA; 1.75A {Homo sapiens} SCOP: a.35.1.7 PDB: 2o49_A*
Probab=26.52 E-value=26 Score=18.05 Aligned_cols=21 Identities=5% Similarity=-0.224 Sum_probs=17.9
Q ss_pred ecchhhHHHHHHHHHhcCCce
Q psy8719 8 CRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~~~ 28 (33)
.+|++-|++|.++|..++..-
T Consensus 7 ~~T~~I~~~ik~~Lk~~~isQ 27 (93)
T 2o4a_A 7 EVSSEIYQWVRDELKRAGISQ 27 (93)
T ss_dssp CCCTTHHHHHHHHHHHHTCCH
T ss_pred ccHHHHHHHHHHHHHHcCCcH
Confidence 479999999999999887653
No 442
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=26.48 E-value=40 Score=16.89 Aligned_cols=17 Identities=12% Similarity=0.219 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHhcCCc
Q psy8719 11 KLDCDNLERYLNSIDRR 27 (33)
Q Consensus 11 K~~ad~La~~L~~~G~~ 27 (33)
...|+.|.++|.+.|..
T Consensus 60 ~~RA~aV~~~L~~~Gi~ 76 (118)
T 2hqs_H 60 ERRANAVKMYLQGKGVS 76 (118)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 56789999999988754
No 443
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=26.46 E-value=49 Score=16.17 Aligned_cols=16 Identities=6% Similarity=0.233 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHhcCC
Q psy8719 11 KLDCDNLERYLNSIDR 26 (33)
Q Consensus 11 K~~ad~La~~L~~~G~ 26 (33)
-++|..+|++|...|.
T Consensus 22 H~EA~tIA~~L~~~~~ 37 (61)
T 3ph0_C 22 HQEAASIADWLAQEEC 37 (61)
T ss_dssp HHHHHHHHHHHHTSST
T ss_pred HHHHHHHHHHHHhCCC
Confidence 4678899999998876
No 444
>3r1m_A Putative uncharacterized protein ST0318; sulfolobus fructose-1,6-bisphosphatase-like fold, hydrolase/ Mg binding, metal binding protein; 1.50A {Sulfolobus tokodaii} PDB: 1umg_A*
Probab=26.39 E-value=20 Score=22.97 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=17.1
Q ss_pred EecchhhHHHHHHHHHhcCC
Q psy8719 7 FCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 7 F~nTK~~ad~La~~L~~~G~ 26 (33)
|=.+|+.|.++|++++++|-
T Consensus 316 fD~~R~~a~~~A~~mRr~Gp 335 (385)
T 3r1m_A 316 FDETRRLANIVADYMRRHGP 335 (385)
T ss_dssp GHHHHHHHHHHHHHHHTTTT
T ss_pred chHHHHHHHHHHHHHHhcCC
Confidence 44678999999999999983
No 445
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=26.36 E-value=83 Score=16.93 Aligned_cols=27 Identities=7% Similarity=0.015 Sum_probs=18.9
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
++++..+.....+++.+.|.+.|.+..
T Consensus 35 ~V~~~~r~~~~~~~~~~~~~~~~~~~~ 61 (260)
T 2ae2_A 35 SVYTCSRNQKELNDCLTQWRSKGFKVE 61 (260)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCcEE
Confidence 466777777777888888877665443
No 446
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=26.26 E-value=84 Score=16.97 Aligned_cols=27 Identities=4% Similarity=-0.066 Sum_probs=19.3
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
++++..+..+..+++.+.|.+.|.+..
T Consensus 33 ~V~~~~r~~~~~~~~~~~~~~~~~~~~ 59 (262)
T 1zem_A 33 AIALLDMNREALEKAEASVREKGVEAR 59 (262)
T ss_dssp EEEEEESCHHHHHHHHHHHHTTTSCEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCcEE
Confidence 456677777778888888877765543
No 447
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=26.23 E-value=62 Score=19.04 Aligned_cols=19 Identities=0% Similarity=0.025 Sum_probs=14.4
Q ss_pred EEEEecchhhHHHHHHHHH
Q psy8719 4 ALIFCRTKLDCDNLERYLN 22 (33)
Q Consensus 4 aIVF~nTK~~ad~La~~L~ 22 (33)
-|.|+.||..+.++.....
T Consensus 68 ~iLfVgtk~~~~~~V~~~A 86 (241)
T 2xzm_B 68 DVMVVCSRIYGQRAAIKFA 86 (241)
T ss_dssp GEEEECCSHHHHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHHH
Confidence 4789999999987665543
No 448
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus}
Probab=26.19 E-value=51 Score=16.99 Aligned_cols=18 Identities=17% Similarity=-0.020 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHhcCCce
Q psy8719 11 KLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 11 K~~ad~La~~L~~~G~~~ 28 (33)
...+|.+++.+...|+.-
T Consensus 56 ~~had~iaErI~~lGg~p 73 (158)
T 2c41_A 56 FAMIDELAERSLMLDGQP 73 (158)
T ss_dssp HHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 457899999999998753
No 449
>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A
Probab=26.04 E-value=75 Score=16.35 Aligned_cols=18 Identities=6% Similarity=0.132 Sum_probs=14.3
Q ss_pred Eec-chhhHHHHHHHHHhc
Q psy8719 7 FCR-TKLDCDNLERYLNSI 24 (33)
Q Consensus 7 F~n-TK~~ad~La~~L~~~ 24 (33)
.|+ +-..+...+..|++.
T Consensus 97 yC~~~g~rs~~aa~~L~~~ 115 (175)
T 2a2k_A 97 HSEFSSERGPRMCRFIRER 115 (175)
T ss_dssp ECSSSSSHHHHHHHHHHHH
T ss_pred ECCCCCCccHHHHHHHHHh
Confidence 488 777888889988864
No 450
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=25.93 E-value=50 Score=17.67 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=17.0
Q ss_pred cchhhHHHHHHHHHhcCCce
Q psy8719 9 RTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 9 nTK~~ad~La~~L~~~G~~~ 28 (33)
.|-++.++|+..|.+.|-.+
T Consensus 83 P~peDI~RV~arLaA~GWPl 102 (112)
T 2m0n_A 83 PTAQDISRVASRLAAGGWPL 102 (112)
T ss_dssp CCHHHHHHHHHHHHHCCTTT
T ss_pred cCHHHHHHHHHHHHhcCCCC
Confidence 46789999999999998754
No 451
>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein; 1.85A {Staphylococcus aureus subsp}
Probab=25.88 E-value=52 Score=17.02 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHhcCCc
Q psy8719 11 KLDCDNLERYLNSIDRR 27 (33)
Q Consensus 11 K~~ad~La~~L~~~G~~ 27 (33)
...+|.|++.+...|+.
T Consensus 53 ~~had~iaERI~~lGg~ 69 (156)
T 2d5k_A 53 SQYVDELAERILAVGGN 69 (156)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCCC
Confidence 35789999999999875
No 452
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=25.86 E-value=85 Score=16.89 Aligned_cols=24 Identities=8% Similarity=0.155 Sum_probs=18.1
Q ss_pred eEEEEecchhhHHHHHHHHHhcCC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
++++..++.+..+++++.|.+.+.
T Consensus 38 ~V~~~~r~~~~~~~~~~~~~~~~~ 61 (252)
T 3f1l_A 38 TVILLGRNEEKLRQVASHINEETG 61 (252)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHS
T ss_pred EEEEEeCCHHHHHHHHHHHHhhcC
Confidence 567778888888888888877654
No 453
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=25.78 E-value=58 Score=16.66 Aligned_cols=18 Identities=6% Similarity=0.093 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHhcCCce
Q psy8719 11 KLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 11 K~~ad~La~~L~~~G~~~ 28 (33)
+++|..+++.|.+.|...
T Consensus 28 ~~qA~~l~~~l~~~~~~~ 45 (161)
T 1ujc_A 28 CDESRLMANWLKGQKVEI 45 (161)
T ss_dssp HHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 578899999999865443
No 454
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=25.51 E-value=57 Score=19.44 Aligned_cols=19 Identities=0% Similarity=-0.116 Sum_probs=14.1
Q ss_pred EEEEecchhhHHHHHHHHH
Q psy8719 4 ALIFCRTKLDCDNLERYLN 22 (33)
Q Consensus 4 aIVF~nTK~~ad~La~~L~ 22 (33)
-|.|+.||..+.++.....
T Consensus 106 ~iLfVgTk~~aq~~V~~~A 124 (253)
T 3bch_A 106 DVSVISSRNTGQRAVLKFA 124 (253)
T ss_dssp GEEEEECSHHHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHH
Confidence 3789999998877665543
No 455
>1f1u_A Homoprotocatechuate 2,3-dioxygenase; extradiol, manganese, biodegradation, aromatic, oxidoreductase; 1.50A {Arthrobacter globiformis} SCOP: d.32.1.3 d.32.1.3 PDB: 1f1r_A 1f1v_A* 1f1x_A
Probab=25.39 E-value=78 Score=17.72 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=17.8
Q ss_pred ecchhhHHHHHHHHHhcCCce
Q psy8719 8 CRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~~~ 28 (33)
+.+.++.+.+.+.|.++|...
T Consensus 81 v~~~~dl~~~~~~l~~~G~~~ 101 (323)
T 1f1u_A 81 VKSPAEVDAAEAYYKELGCRT 101 (323)
T ss_dssp ESSHHHHHHHHHHHHHTTCCE
T ss_pred eCCHHHHHHHHHHHHhCCCcE
Confidence 467899999999999998753
No 456
>3c9p_A Uncharacterized protein SP1917; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 1.96A {Streptococcus pneumoniae}
Probab=25.15 E-value=43 Score=18.38 Aligned_cols=15 Identities=7% Similarity=0.180 Sum_probs=13.1
Q ss_pred cchhhHHHHHHHHHh
Q psy8719 9 RTKLDCDNLERYLNS 23 (33)
Q Consensus 9 nTK~~ad~La~~L~~ 23 (33)
+||+++|++-.||-.
T Consensus 29 RTk~Evd~vI~WLTG 43 (123)
T 3c9p_A 29 GKAESVHQVTSWLTG 43 (123)
T ss_dssp CCHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHhc
Confidence 799999999999864
No 457
>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=25.11 E-value=63 Score=15.14 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=17.4
Q ss_pred ecchhhHHHHHHHHHhcCCce
Q psy8719 8 CRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~~~ 28 (33)
+.++++.+.+.+.|+++|...
T Consensus 75 ~~~~~d~~~~~~~l~~~G~~~ 95 (135)
T 3rri_A 75 FRDKKHFDNLYKLAKQRGIPF 95 (135)
T ss_dssp CSSHHHHHHHHHHHHHTTCCE
T ss_pred EcChHhHHHHHHHHHHcCCce
Confidence 345589999999999999864
No 458
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=25.06 E-value=58 Score=14.66 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=21.0
Q ss_pred ceEEEEecc-hhhHHHHHHHHHhcCCceee
Q psy8719 2 DRALIFCRT-KLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 2 ~~aIVF~nT-K~~ad~La~~L~~~G~~~~~ 30 (33)
....||... =-.|.++...|.+.|..+.+
T Consensus 12 ~~v~ly~~~~Cp~C~~~~~~L~~~gi~~~~ 41 (92)
T 3ic4_A 12 AEVLMYGLSTCPHCKRTLEFLKREGVDFEV 41 (92)
T ss_dssp SSSEEEECTTCHHHHHHHHHHHHHTCCCEE
T ss_pred ceEEEEECCCChHHHHHHHHHHHcCCCcEE
Confidence 346777654 47889999999988876543
No 459
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=24.95 E-value=55 Score=18.28 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCceeee
Q psy8719 14 CDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 14 ad~La~~L~~~G~~~~~~ 31 (33)
+-.|++.|.++|++..+.
T Consensus 39 ~l~LA~~L~~rGh~Vt~~ 56 (400)
T 4amg_A 39 TVPLAQALRALGHEVRYA 56 (400)
T ss_dssp GHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 457899999999987664
No 460
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A*
Probab=24.91 E-value=58 Score=16.06 Aligned_cols=17 Identities=12% Similarity=0.088 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHhcCCc
Q psy8719 11 KLDCDNLERYLNSIDRR 27 (33)
Q Consensus 11 K~~ad~La~~L~~~G~~ 27 (33)
+..++.+++.+...|+.
T Consensus 52 ~~Ha~~l~e~i~~lgg~ 68 (155)
T 2fkz_A 52 MKHADKLIKRILFLEGL 68 (155)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 56789999999988875
No 461
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=24.90 E-value=57 Score=16.46 Aligned_cols=17 Identities=6% Similarity=0.071 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHhcCCc
Q psy8719 11 KLDCDNLERYLNSIDRR 27 (33)
Q Consensus 11 K~~ad~La~~L~~~G~~ 27 (33)
+..++.+++.+...|+.
T Consensus 54 ~~Had~l~e~i~~lGg~ 70 (161)
T 3uoi_A 54 MRHAEEITDRILLLDGL 70 (161)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 56789999999998875
No 462
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=24.89 E-value=84 Score=16.51 Aligned_cols=25 Identities=12% Similarity=-0.021 Sum_probs=19.6
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCc
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~ 27 (33)
..++++.+....+++.+.|++.|..
T Consensus 193 ~l~~~~~~~~~~~~~~~~l~~~gf~ 217 (258)
T 2pwy_A 193 FLVAYLPNITQVLELVRAAEAHPFR 217 (258)
T ss_dssp EEEEEESCHHHHHHHHHHHTTTTEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 4577888888889999999886643
No 463
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=24.56 E-value=53 Score=18.79 Aligned_cols=20 Identities=10% Similarity=-0.074 Sum_probs=15.9
Q ss_pred cchhhHHHHHHHHHhcCCce
Q psy8719 9 RTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 9 nTK~~ad~La~~L~~~G~~~ 28 (33)
||+.-|+.+++.|.+.|.+.
T Consensus 269 nT~~la~~i~~~l~~~g~~v 288 (404)
T 2ohh_A 269 STRKMAHAIAEGAMSEGVDV 288 (404)
T ss_dssp HHHHHHHHHHHHHHTTTCEE
T ss_pred HHHHHHHHHHHHHHhCCCeE
Confidence 57888889999988877654
No 464
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=24.53 E-value=1e+02 Score=17.32 Aligned_cols=24 Identities=8% Similarity=0.166 Sum_probs=19.3
Q ss_pred eEEEEecchhhHHHHHHHHHhcCC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
++++..+..+..+++.+.|.+.|.
T Consensus 67 ~V~~~~r~~~~~~~~~~~l~~~~~ 90 (293)
T 3rih_A 67 NVAVAARSPRELSSVTAELGELGA 90 (293)
T ss_dssp EEEEEESSGGGGHHHHHHHTTSSS
T ss_pred EEEEEECCHHHHHHHHHHHHhhCC
Confidence 567778888888888888888773
No 465
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=24.33 E-value=71 Score=17.12 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHhcCCcee
Q psy8719 12 LDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 12 ~~ad~La~~L~~~G~~~~ 29 (33)
-+++.|+++|++.|....
T Consensus 15 Tq~~~L~~~L~~~g~~v~ 32 (197)
T 3hjn_A 15 TQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp HHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHCCCcEE
Confidence 367899999999997654
No 466
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis}
Probab=24.25 E-value=59 Score=16.44 Aligned_cols=17 Identities=0% Similarity=0.061 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHhcCCc
Q psy8719 11 KLDCDNLERYLNSIDRR 27 (33)
Q Consensus 11 K~~ad~La~~L~~~G~~ 27 (33)
++.++.+++.+...|+.
T Consensus 63 ~~Had~lae~i~~lGg~ 79 (170)
T 2vzb_A 63 RHHAQLIADRIIELEGV 79 (170)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 46789999999998874
No 467
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=24.25 E-value=91 Score=16.70 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=19.2
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
++++..++.+..+++.+.|.+.|.+..
T Consensus 40 ~V~~~~r~~~~~~~~~~~l~~~~~~~~ 66 (260)
T 2zat_A 40 HVVVSSRKQENVDRTVATLQGEGLSVT 66 (260)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCceE
Confidence 466777777778888888877665543
No 468
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=24.24 E-value=62 Score=20.29 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=21.3
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCce
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
+..-|-++|...+..+.+.|.+.|...
T Consensus 343 ~diaVL~r~~~~~~~l~~~L~~~gIp~ 369 (673)
T 1uaa_A 343 KDYAILYRGNHQSRVFEKFLMQNRIPY 369 (673)
T ss_dssp TTEEEEESSSGGGTTHHHHHHHTTCCE
T ss_pred cCEEEEEechhhHHHHHHHHHHCCCCE
Confidence 345677888888889999998888754
No 469
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=24.20 E-value=87 Score=20.83 Aligned_cols=26 Identities=12% Similarity=0.281 Sum_probs=22.6
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCc
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~ 27 (33)
.+++|-+.|...+++|.+.|.+.|..
T Consensus 401 ~~ilv~a~tn~A~~~l~~~l~~~g~~ 426 (800)
T 2wjy_A 401 GPVLVCAPSNIAVDQLTEKIHQTGLK 426 (800)
T ss_dssp SCEEEEESSHHHHHHHHHHHHTTTCC
T ss_pred CcEEEEcCcHHHHHHHHHHHHHhCcc
Confidence 47889999999999999999887753
No 470
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=24.19 E-value=88 Score=16.48 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=19.4
Q ss_pred eEEEEecchhhHHHHHHHHHhcCC
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~ 26 (33)
++++..++....+++.+.|...|.
T Consensus 40 ~V~~~~r~~~~~~~~~~~~~~~~~ 63 (247)
T 3i1j_A 40 SVVLLGRTEASLAEVSDQIKSAGQ 63 (247)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTS
T ss_pred EEEEEecCHHHHHHHHHHHHhcCC
Confidence 567788888888888888887764
No 471
>2haw_A Manganese-dependent inorganic pyrophosphatase; substrate complex, hydrolase; HET: 1PE PG4; 1.75A {Bacillus subtilis} SCOP: c.107.1.1 PDB: 1k23_A* 1wpm_A* 2iw4_A*
Probab=24.09 E-value=52 Score=18.94 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=20.5
Q ss_pred CceEEEEecchhhHHHHHHH------HHhcCCce
Q psy8719 1 MDRALIFCRTKLDCDNLERY------LNSIDRRL 28 (33)
Q Consensus 1 ~~~aIVF~nTK~~ad~La~~------L~~~G~~~ 28 (33)
|.+.+|+++..-|.|.++.. |++.|.+.
T Consensus 1 ~~~i~I~gH~~pD~DaigSalal~~~l~~~g~~~ 34 (309)
T 2haw_A 1 MEKILIFGHQNPDTDTICSAIAYADLKNKLGFNA 34 (309)
T ss_dssp -CCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCEEEEcCCCCChHHHHHHHHHHHHHHHcCCCe
Confidence 56789999999999987654 45566553
No 472
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Probab=24.09 E-value=98 Score=18.75 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=22.4
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCce
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
.++|++.+.+++..+.+..+++|..+
T Consensus 40 ~~vv~p~s~~dv~~~v~~a~~~~~~~ 65 (459)
T 2bvf_A 40 SLIARCLSAGDVAKSVRYACDNGLEI 65 (459)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHTCCE
T ss_pred CEEEecCCHHHHHHHHHHHHHcCCcE
Confidence 57899999999999999998887654
No 473
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=24.02 E-value=59 Score=17.33 Aligned_cols=17 Identities=24% Similarity=0.063 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHhcCCc
Q psy8719 11 KLDCDNLERYLNSIDRR 27 (33)
Q Consensus 11 K~~ad~La~~L~~~G~~ 27 (33)
++.++.+++.+...|+.
T Consensus 56 ~~Had~laeri~~lGg~ 72 (189)
T 3oj5_A 56 RNHAMMLVQHLLDRDLR 72 (189)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 46789999999999876
No 474
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=23.95 E-value=98 Score=16.93 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=18.7
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~~ 30 (33)
++++..+.....+.+.+.|++.|.+..+
T Consensus 70 ~V~~~~r~~~~~~~~~~~l~~~~~~~~~ 97 (285)
T 2c07_A 70 HVICISRTQKSCDSVVDEIKSFGYESSG 97 (285)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTTCCEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHhcCCceeE
Confidence 4566666777777888888776655443
No 475
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=23.85 E-value=57 Score=16.85 Aligned_cols=20 Identities=0% Similarity=-0.095 Sum_probs=15.3
Q ss_pred cchhhHHHHHHHHHhcCCce
Q psy8719 9 RTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 9 nTK~~ad~La~~L~~~G~~~ 28 (33)
||+.-++.+++.|.+.|.+.
T Consensus 16 ~T~~la~~i~~~l~~~g~~v 35 (199)
T 2zki_A 16 SIVELAKEIGKGAEEAGAEV 35 (199)
T ss_dssp HHHHHHHHHHHHHHHHSCEE
T ss_pred HHHHHHHHHHHHHHhCCCEE
Confidence 67777888888888877654
No 476
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=23.82 E-value=64 Score=16.91 Aligned_cols=21 Identities=0% Similarity=-0.194 Sum_probs=16.5
Q ss_pred ecchhhHHHHHHHHHhcCCce
Q psy8719 8 CRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~~~ 28 (33)
-||+.-++.+++.|.+.|.+.
T Consensus 18 g~T~~la~~i~~~l~~~g~~v 38 (211)
T 1ydg_A 18 GTGYAMAQEAAEAGRAAGAEV 38 (211)
T ss_dssp SHHHHHHHHHHHHHHHTTCEE
T ss_pred ChHHHHHHHHHHHHhcCCCEE
Confidence 367888888999998877654
No 477
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.70 E-value=19 Score=18.85 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCC
Q psy8719 14 CDNLERYLNSIDR 26 (33)
Q Consensus 14 ad~La~~L~~~G~ 26 (33)
+++|+++|++.|.
T Consensus 24 p~~VadWLkk~g~ 36 (90)
T 2eap_A 24 PDSLADYFKKLNY 36 (90)
T ss_dssp TTTHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 4678999998886
No 478
>3e5d_A Putative glyoxalase I; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 2.70A {Listeria monocytogenes str}
Probab=23.70 E-value=64 Score=14.71 Aligned_cols=21 Identities=24% Similarity=0.140 Sum_probs=17.3
Q ss_pred ecchhhHHHHHHHHHhcCCce
Q psy8719 8 CRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~~~ 28 (33)
+...++.+.+.+.|.++|...
T Consensus 79 v~d~~~v~~~~~~l~~~G~~~ 99 (127)
T 3e5d_A 79 TGTKEAVDELTEKLRQDGFAI 99 (127)
T ss_dssp CSSHHHHHHHHHHHHHTTCCE
T ss_pred cCCHHHHHHHHHHHHHcCCeE
Confidence 455677999999999999875
No 479
>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=23.70 E-value=55 Score=17.94 Aligned_cols=19 Identities=11% Similarity=0.358 Sum_probs=16.6
Q ss_pred chhhHHHHHHHHHhcCCce
Q psy8719 10 TKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 10 TK~~ad~La~~L~~~G~~~ 28 (33)
+|++++.+-..|...|...
T Consensus 116 sKeeAE~iK~kLe~aGA~V 134 (137)
T 2ftc_E 116 AKAEAEKIKAALEAVGGTV 134 (137)
T ss_pred CHHHHHHHHHHHHHcCCEE
Confidence 6899999999999998753
No 480
>3t2c_A Fructose-1,6-bisphosphate aldolase/phosphatase; (beta/alpha)8 TIM barrel, FBP, F6P, DHAP, GAP, phosphorylati lyase, hydrolase; HET: 13P; 1.30A {Thermoproteus neutrophilus} PDB: 3t2b_A* 3t2d_A* 3t2e_A* 3t2f_A 3t2g_A*
Probab=23.66 E-value=23 Score=22.85 Aligned_cols=20 Identities=10% Similarity=0.316 Sum_probs=17.0
Q ss_pred EecchhhHHHHHHHHHhcCC
Q psy8719 7 FCRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 7 F~nTK~~ad~La~~L~~~G~ 26 (33)
|=.+|+.|.++|++++++|-
T Consensus 326 fD~~R~~a~~~Ad~mRr~Gp 345 (407)
T 3t2c_A 326 FDYVRQTAAQIADYIRRMGP 345 (407)
T ss_dssp HHHHHHHHHHHHHHHHTTCS
T ss_pred hhHHHHHHHHHHHHHHhcCC
Confidence 44678999999999999983
No 481
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=23.62 E-value=30 Score=17.52 Aligned_cols=15 Identities=7% Similarity=-0.002 Sum_probs=12.1
Q ss_pred hHHHHHHHHHhcCCc
Q psy8719 13 DCDNLERYLNSIDRR 27 (33)
Q Consensus 13 ~ad~La~~L~~~G~~ 27 (33)
.+++|+++|++.|.+
T Consensus 21 s~edV~~WL~~~Gl~ 35 (97)
T 2d8c_A 21 SPKKVADWLLENAMP 35 (97)
T ss_dssp CTTHHHHHHHHTTCT
T ss_pred CHHHHHHHHHHcCCH
Confidence 467899999988864
No 482
>3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* 3o03_A*
Probab=23.57 E-value=1e+02 Score=17.14 Aligned_cols=27 Identities=4% Similarity=-0.246 Sum_probs=19.1
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCcee
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRLI 29 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~~ 29 (33)
++++..+.....+++.+.|+..|.+..
T Consensus 60 ~V~~~~r~~~~~~~~~~~l~~~~~~~~ 86 (291)
T 3cxt_A 60 TIVFNDINQELVDRGMAAYKAAGINAH 86 (291)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTCCCE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEE
Confidence 466777777778888888877665443
No 483
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=23.50 E-value=1.2e+02 Score=20.00 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=24.5
Q ss_pred CceEEEEecchhhHHHHHHHHHhcCCce
Q psy8719 1 MDRALIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 1 ~~~aIVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
+.+++|=+.-|.....+++.|.+.|.+.
T Consensus 10 i~~aLISVsDK~glvelAk~L~~lGfeI 37 (523)
T 3zzm_A 10 IRRALISVYDKTGLVDLAQGLSAAGVEI 37 (523)
T ss_dssp CCEEEEEESSCTTHHHHHHHHHHTTCEE
T ss_pred ccEEEEEEeccccHHHHHHHHHHCCCEE
Confidence 3578888899999999999999999875
No 484
>2x3g_A SIRV1 hypothetical protein ORF119; viral protein, HOST membrane; 1.80A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=23.47 E-value=35 Score=18.48 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=15.7
Q ss_pred eEEEEecchhhHHHHHHHHH
Q psy8719 3 RALIFCRTKLDCDNLERYLN 22 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~ 22 (33)
..|+|+|.|-+-.+|.+.+.
T Consensus 66 HIL~FTNKkLDY~r~H~~M~ 85 (119)
T 2x3g_A 66 HILVFTNKKLDYSRVHKHMP 85 (119)
T ss_dssp EEEEEESSCCCHHHHHHTSC
T ss_pred EEEEEecccccHHHHHhhCC
Confidence 36899999998888877654
No 485
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=23.46 E-value=74 Score=18.73 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=17.3
Q ss_pred chhhHHHHHHHHHhcCCceee
Q psy8719 10 TKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 10 TK~~ad~La~~L~~~G~~~~~ 30 (33)
-.+...+|++.|++.|....|
T Consensus 62 AQ~~v~el~~~L~~~G~~V~f 82 (203)
T 2fsv_C 62 AQHALREMADVLKKEGVEVSY 82 (203)
T ss_dssp CHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHcCCeEEE
Confidence 356788999999999988765
No 486
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=23.40 E-value=81 Score=15.81 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=19.0
Q ss_pred ceEEEEecchhhHHHHHHHHHhcCCc
Q psy8719 2 DRALIFCRTKLDCDNLERYLNSIDRR 27 (33)
Q Consensus 2 ~~aIVF~nTK~~ad~La~~L~~~G~~ 27 (33)
...+++++ ....+.|-+.|.+.|..
T Consensus 6 k~I~aIIr-~~~~~~v~~AL~~~G~~ 30 (116)
T 2ns1_B 6 KLVTVIIK-PFKLEDVREALSSIGIQ 30 (116)
T ss_dssp EEEEEEEC-GGGHHHHHHHHHHTTCC
T ss_pred EEEEEEEC-HHHHHHHHHHHHHCCCC
Confidence 34556666 78899999999998863
No 487
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.40 E-value=56 Score=16.59 Aligned_cols=19 Identities=16% Similarity=-0.095 Sum_probs=15.8
Q ss_pred ecchhhHHHHHHHHHhcCC
Q psy8719 8 CRTKLDCDNLERYLNSIDR 26 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G~ 26 (33)
+.|+++|-.|.+.|-+.|.
T Consensus 63 ~~sR~eAv~lgq~Ll~~gv 81 (105)
T 2ysr_A 63 EVTRQQTIQLLRKFLKNHV 81 (105)
T ss_dssp TCCHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHHHHHHCCC
Confidence 4689999999999987763
No 488
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=23.40 E-value=5.6 Score=16.79 Aligned_cols=14 Identities=14% Similarity=0.067 Sum_probs=10.4
Q ss_pred HHHHHHHhcCCcee
Q psy8719 16 NLERYLNSIDRRLI 29 (33)
Q Consensus 16 ~La~~L~~~G~~~~ 29 (33)
-+|+.|++-|++|.
T Consensus 9 wiAqELRRIGDeFN 22 (27)
T 3kj0_B 9 WYAQELRRIGDEFN 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36788888887764
No 489
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=23.37 E-value=76 Score=18.38 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=17.7
Q ss_pred chhhHHHHHHHHHhcCCceee
Q psy8719 10 TKLDCDNLERYLNSIDRRLIY 30 (33)
Q Consensus 10 TK~~ad~La~~L~~~G~~~~~ 30 (33)
-.+...+|++.|+++|....|
T Consensus 39 AQ~~v~el~~~L~~~G~~V~f 59 (180)
T 1pno_A 39 AQHALREMADVLKKEGVEVSY 59 (180)
T ss_dssp CHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHCCCeEEE
Confidence 467788999999999988766
No 490
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=23.26 E-value=8.2 Score=16.15 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=10.7
Q ss_pred HHHHHHHhcCCcee
Q psy8719 16 NLERYLNSIDRRLI 29 (33)
Q Consensus 16 ~La~~L~~~G~~~~ 29 (33)
.+|+.|++-|++|.
T Consensus 7 ~iAqELRRIGDeFN 20 (26)
T 2wh6_B 7 WIAQELRRIGDEFN 20 (26)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHh
Confidence 47888888887764
No 491
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}
Probab=23.14 E-value=66 Score=15.73 Aligned_cols=17 Identities=6% Similarity=0.036 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHhcCCc
Q psy8719 11 KLDCDNLERYLNSIDRR 27 (33)
Q Consensus 11 K~~ad~La~~L~~~G~~ 27 (33)
+..++.+++.+...|+.
T Consensus 56 ~~Ha~~l~e~i~~lgg~ 72 (149)
T 2qqy_A 56 QGHALYLAEKIKTLGGT 72 (149)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 46788999999988874
No 492
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=23.11 E-value=1.1e+02 Score=19.04 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=18.1
Q ss_pred eEEEE-ecc-----hhhHHHHHHHHHhcCCce
Q psy8719 3 RALIF-CRT-----KLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 3 ~aIVF-~nT-----K~~ad~La~~L~~~G~~~ 28 (33)
+++|. ..+ ...|.+|++.|+++|...
T Consensus 340 qV~Ii~~~~~~e~~~~~A~~l~~~Lr~~Gi~v 371 (454)
T 1g5h_A 340 KVALDVGKGPTVELRQVCQGLLNELLENGISV 371 (454)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHHHHHTTCCE
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEE
Confidence 56666 332 345789999999998765
No 493
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Probab=23.08 E-value=1e+02 Score=19.07 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=22.5
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCce
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
.+||++.+.+++..+.+..+++|..+
T Consensus 44 ~~vv~p~s~~dv~~~v~~a~~~~~~~ 69 (503)
T 1zr6_A 44 AAIAIPRSTEDIAAAVQCGLDAGVQI 69 (503)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHTCCE
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCeE
Confidence 57999999999999999998887654
No 494
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=23.07 E-value=55 Score=14.45 Aligned_cols=15 Identities=13% Similarity=0.457 Sum_probs=11.5
Q ss_pred chhhHHHHHHHHHhc
Q psy8719 10 TKLDCDNLERYLNSI 24 (33)
Q Consensus 10 TK~~ad~La~~L~~~ 24 (33)
|.++.+.|+.+|...
T Consensus 64 s~~ei~~l~~yl~~l 78 (79)
T 2d0s_A 64 AEADIEKIVRWVLTL 78 (79)
T ss_dssp CHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhC
Confidence 677888888888653
No 495
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=23.06 E-value=48 Score=17.32 Aligned_cols=18 Identities=17% Similarity=0.038 Sum_probs=15.7
Q ss_pred ecchhhHHHHHHHHHhcC
Q psy8719 8 CRTKLDCDNLERYLNSID 25 (33)
Q Consensus 8 ~nTK~~ad~La~~L~~~G 25 (33)
+.++.+|-.+++.|-+.|
T Consensus 53 ~~~R~EAv~lgq~Ll~~G 70 (109)
T 1uhw_A 53 VRNRQEGLMISASLLSEG 70 (109)
T ss_dssp SSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 568899999999998887
No 496
>4hc5_A Glyoxalase/bleomycin resistance protein/dioxygena; MCSG, GEBA genomes, structural genomics, midwest center for structural genomics; HET: MSE GOL; 1.45A {Sphaerobacter thermophilus}
Probab=22.96 E-value=54 Score=15.06 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHhcCCce
Q psy8719 12 LDCDNLERYLNSIDRRL 28 (33)
Q Consensus 12 ~~ad~La~~L~~~G~~~ 28 (33)
++.+.+.+.|.+.|...
T Consensus 88 ~d~~~~~~~l~~~G~~~ 104 (133)
T 4hc5_A 88 RDIDEAYKTLTERGVTF 104 (133)
T ss_dssp SCHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHCCCEe
Confidence 68999999999998764
No 497
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=22.91 E-value=77 Score=17.56 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCceeee
Q psy8719 14 CDNLERYLNSIDRRLIYY 31 (33)
Q Consensus 14 ad~La~~L~~~G~~~~~~ 31 (33)
+-.|++.|.++|++..+.
T Consensus 21 ~~~La~~L~~~GheV~v~ 38 (402)
T 3ia7_A 21 SLGLVSELARRGHRITYV 38 (402)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHhCCCEEEEE
Confidence 567899999999987764
No 498
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=22.91 E-value=63 Score=18.70 Aligned_cols=20 Identities=15% Similarity=-0.188 Sum_probs=15.9
Q ss_pred cchhhHHHHHHHHHhcCCce
Q psy8719 9 RTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 9 nTK~~ad~La~~L~~~G~~~ 28 (33)
||+.-|+.+++.|.+.|.+.
T Consensus 269 nT~~la~~i~~~l~~~g~~v 288 (414)
T 2q9u_A 269 TTHRMALALLDGARSTGCET 288 (414)
T ss_dssp HHHHHHHHHHHHHHHTTCEE
T ss_pred hHHHHHHHHHHHHHhCCCeE
Confidence 57888888999998877654
No 499
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A*
Probab=22.90 E-value=87 Score=19.62 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=22.8
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCce
Q psy8719 3 RALIFCRTKLDCDNLERYLNSIDRRL 28 (33)
Q Consensus 3 ~aIVF~nTK~~ad~La~~L~~~G~~~ 28 (33)
.+||++.+-+++..+.+..+++|...
T Consensus 47 ~~vv~P~s~~dV~~~v~~a~~~~~~v 72 (495)
T 3fw9_A 47 SAIILPGSKEELSNTIRCIRKGSWTI 72 (495)
T ss_dssp SEEECCCSHHHHHHHHHHHHTSSCEE
T ss_pred CEEEecCCHHHHHHHHHHHHHcCCeE
Confidence 58999999999999999999887654
No 500
>2qqz_A Glyoxalase family protein, putative; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 1.92A {Bacillus anthracis str}
Probab=22.83 E-value=67 Score=14.90 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=13.8
Q ss_pred hHHHHHHHHHhcCCce
Q psy8719 13 DCDNLERYLNSIDRRL 28 (33)
Q Consensus 13 ~ad~La~~L~~~G~~~ 28 (33)
+.+.+.+.|.++|...
T Consensus 82 d~~~~~~~l~~~G~~~ 97 (126)
T 2qqz_A 82 KIDEFKQELIKQGIEV 97 (126)
T ss_dssp THHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHcCCCc
Confidence 7899999999998754
Done!