RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8719
         (33 letters)



>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human
          hepatitis C virus (HCV), different isolates [TaxId:
          11103]}
          Length = 299

 Score = 33.4 bits (76), Expect = 2e-04
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 3  RALIFCRTKLDCDNLERYLNS 23
          R LIFC +K  CD L   L +
Sbjct: 38 RHLIFCHSKKKCDELAAKLVA 58


>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C
          virus (HCV), different isolates [TaxId: 11103]}
          Length = 138

 Score = 31.2 bits (70), Expect = 0.001
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 2  DRALIFCRTKLDCDNLERYLNSIDRRLIYYFT 33
           R LIFC +K  CD L   L ++    + Y+ 
Sbjct: 36 GRHLIFCHSKKKCDELAAKLVALGINAVAYYR 67


>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
          gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 248

 Score = 25.9 bits (56), Expect = 0.076
 Identities = 4/21 (19%), Positives = 9/21 (42%)

Query: 2  DRALIFCRTKLDCDNLERYLN 22
             +I+ RT  + + +   L 
Sbjct: 26 TGGIIYARTGEEAEEIYESLK 46


>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
          fulgidus [TaxId: 2234]}
          Length = 201

 Score = 24.5 bits (52), Expect = 0.30
 Identities = 5/26 (19%), Positives = 12/26 (46%)

Query: 4  ALIFCRTKLDCDNLERYLNSIDRRLI 29
           L+F  T+   +     L++I  + +
Sbjct: 43 VLVFESTRRGAEKTAVKLSAITAKYV 68


>d2oqpa1 a.26.1.2 (A:2-134) Interleukin-21 (IL-21) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 133

 Score = 20.6 bits (43), Expect = 5.9
 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 2  DRALIFCRTKL-DCDNLERYLNSIDRRLIYY 31
          DR +I  R  +   D L+ Y+N +    +  
Sbjct: 4  DRHMIRMRQLIDIVDQLKNYVNDLVPEFLPA 34


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.337    0.150    0.473 

Gapped
Lambda     K      H
   0.267   0.0455    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 129,295
Number of extensions: 2716
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 6
Length of query: 33
Length of database: 2,407,596
Length adjustment: 7
Effective length of query: 26
Effective length of database: 2,311,486
Effective search space: 60098636
Effective search space used: 60098636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 47 (22.6 bits)