BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8722
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 291 bits (745), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 137/174 (78%), Positives = 155/174 (89%)
Query: 5 SLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRL 64
SL S YSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+
Sbjct: 10 SLVPRGSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRV 69
Query: 65 NLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLT 124
NLAIWDTAGQERFHALGPIYYR SNGA+LVYDITDEDSF+KVKNWVKEL+KMLGN+ICL
Sbjct: 70 NLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLC 129
Query: 125 IAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
I GNKIDLEK+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E
Sbjct: 130 IVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 183
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 290 bits (743), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 135/168 (80%), Positives = 153/168 (91%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
S YSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIWD
Sbjct: 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWD 61
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKI 130
TAGQERFHALGPIYYR SNGA+LVYDITDEDSF+KVKNWVKEL+KMLGN+ICL I GNKI
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121
Query: 131 DLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
DLEK+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E
Sbjct: 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 288 bits (736), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 134/168 (79%), Positives = 152/168 (90%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
S YSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTL ASFL KKLNI GKR+NLAIWD
Sbjct: 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKI 130
TAGQERFHALGPIYYR SNGA+LVYDITDEDSF+KVKNWVKEL+KMLGN+ICL I GNKI
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121
Query: 131 DLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
DLEK+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E
Sbjct: 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 160 bits (405), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 106/161 (65%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
KV LLG+ VGK+S+V R+VED F+ T+ ASF+ K + + IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF AL P+YYR S A++VYDIT E++F +KNWV+EL++ I + IAGNK DL
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R VM+ DA+ YA S+ A+ TSAK I E+F+E+S+R+
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 159 bits (403), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 110/166 (66%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
S+ KV LLG+ VGK+S+V R+V+D F+ T+ ASF+ K + + IWD
Sbjct: 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKI 130
TAGQERFH+L P+YYR S AV+VYDIT +DSF +K WVKELK+ +I + IAGNK
Sbjct: 79 TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138
Query: 131 DLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
DL R V +DA++YA+S+GA+ TSAK IEE+F +S+++
Sbjct: 139 DLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 111/161 (68%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+QA+FL + + + + IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+ D+F + KNWVKEL++ +I + +AGNK DL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R V ++A+ YA + TSAK + E+F+ +++++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 107/166 (64%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
S+ KV LLG+ VGK+S++ R+VED F+ T+ ASF+ K + + IWD
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKI 130
TAG ERF AL P+YYR S A++VYDIT E++F +KNWV+EL++ I + IAGNK
Sbjct: 62 TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121
Query: 131 DLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
DL R VM+ DA+ YA S+ A+ TSAK I E+F+E+S+R+
Sbjct: 122 DLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 110/161 (68%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+ D+F + KNWVKEL++ +I + +AGNK DL +
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R V ++A+ YA + TSAK + E+F+ +++++
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 112/161 (69%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+E+SF + KNWVKEL++ +I + ++GNK DL +
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R V ++A+ YA + TSAK + + E+F+ +++++
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 155 bits (392), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 112/161 (69%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+E+SF + KNWVKEL++ +I + ++GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R V ++A+ YA + TSAK + + E+F+ +++++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 112/161 (69%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+E+SF + KNWVKEL++ +I + ++GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R V ++A+ YA + TSAK + + E+F+ +++++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 112/161 (69%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+E+SF + KNWVKEL++ +I + ++GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R V ++A+ YA + TSAK + + E+F+ +++++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 112/161 (69%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+E+SF + KNWVKEL++ +I + ++GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R V ++A+ YA + TSAK + + E+F+ +++++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 154 bits (388), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 112/161 (69%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+E+SF + KNWVKEL++ +I + ++GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R V ++A+ YA + TSAK + + E+F+ +++++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 112/168 (66%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
++S FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + I
Sbjct: 2 SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 61
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGN 128
WDTAGQER+H+L P+YYR + A++VYDIT++++F + K WVKEL++ I + +AGN
Sbjct: 62 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGN 121
Query: 129 KIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
K DL +R V E+A+ YA + TSAK + ++FL +++++
Sbjct: 122 KADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 112/161 (69%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+E+SF + KNWVKEL++ +I + ++GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R V ++A+ YA + TSAK + + E+F+ +++++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 110/161 (68%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P YYR + A++VYDIT+E+SF + KNWVKEL++ +I + ++GNK DL +
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R V ++A+ YA + TSAK + + E+F +++++
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 109/161 (67%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+ D+F + KNWVKEL++ +I + +AGNK DL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R V ++A+ YA + TSAK + E+F+ +++++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 111/161 (68%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+E+SF + KNWVKEL++ +I + ++GNK DL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R V ++A+ YA + TSAK + + E+F+ +++++
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 108/160 (67%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+VLLG+ GK+S+VLR+V+D+F E +T+ A+F ++ L + + IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136
+H+L P+YYR + A++V+D+T++ SFE+ K WV+EL+ ++ + +AGNK DL R
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 137 TVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
V EDA+ YAQ G TSAK ++E+F E+++R+
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 147 bits (370), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 105/165 (63%), Gaps = 3/165 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
S K+VLLGE VGK+S+VLR+V + F E T+ A+FL +++ I + IWDTAGQ
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
ERF +L P YYR + A++VYD+T SF K ++WVKEL + DI + + GNKID +
Sbjct: 63 ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122
Query: 135 ---QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
+R V +E+ EK A+ G + F TSAK + ++FL + +++
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 140 bits (353), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 101/166 (60%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++L+G+ VGKT V+ R+ ED FN I+T+ F + + + GKR+ L IWDTAG
Sbjct: 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 66
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR + G +LVYDIT+E SF+ ++NW++ +++ D+ I GNK D+
Sbjct: 67 QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 126
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+R V +E EK A G TSAK N +E F L++ + K
Sbjct: 127 DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 172
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 140 bits (352), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 99/161 (61%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++L+G+ VGKT V+ R+ ED FN I+T+ F + + + GKR+ L IWDTAG
Sbjct: 5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 64
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR + G +LVYDIT+E SF+ ++NW++ +++ D+ I GNK D+
Sbjct: 65 QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 124
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174
+R V +E EK A G TSAK N +E F L++
Sbjct: 125 DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 165
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 109/169 (64%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+ FK+VL+G VGKT +V R+ + F T+ F+ K + I G+++ L IWDTAG
Sbjct: 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 84
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF ++ YYR +N +L YDIT E+SF + W++E+++ N + + GNKIDL
Sbjct: 85 QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
++R V Q+ AE+++++ + TSAK + +E++FL+L+ R++ +A++
Sbjct: 145 ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQ 193
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 115/172 (66%), Gaps = 2/172 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK++++G+ VGK+S++LR+ ++ F+ +ITT+ F + + I G+++ L IWDTAGQE
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF + YYR ++G ++VYD+T +SF VK W+ E+ + +D+C + GNK D ++
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPER 128
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAK 187
+ V EDA K+A +G F TSAK N +EEMF +++ +L +A++ +LAK
Sbjct: 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVL-RAKKDNLAK 179
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K++L+G+ VGK+ +++R+VEDKFN ITT+ F K ++I GK++ L IWDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136
F + YYR + G +LVYDITDE +F +K W K + + ++ L + GNK D+E R
Sbjct: 65 FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TR 123
Query: 137 TVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
V + E A+ +G +SAK + + E+F L++ + EK
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 101/163 (61%), Gaps = 1/163 (0%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K++L+G+ VGK+ +++R+VEDKFN ITT+ F K ++I GK++ L IWDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136
F + YYR + G +LVYDITDE +F +K W K + + ++ L + GNK D E R
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXE-TR 123
Query: 137 TVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
V + E A+ +G +SAK + + E+F L++ + EK
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 106/172 (61%), Gaps = 4/172 (2%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
N Y FK++L+G+ VGK+ ++LR+ +D + E +I+T+ F + + + GK + L I
Sbjct: 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 69
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGN 128
WDTAGQERF + YYR ++G ++VYD+TD++SF VK W++E+ + ++ + GN
Sbjct: 70 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
Query: 129 KIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL----ELSQRM 176
K DL ++ V A+++A S+G TSAK +E+ F+ E+ +RM
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K++L+G+ VGK+ +++R+VEDKFN ITT+ F K ++I GK++ L +WDTAGQER
Sbjct: 22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136
F + YYR + G +LVYD+TDE +F +K W K + + ++ L + GNK D+E R
Sbjct: 82 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TR 140
Query: 137 TVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
V + E A+ +G +SAK + + E+F L++ + EK
Sbjct: 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 103/163 (63%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+V LGE VGKTS++ R++ D F+ + T+ FL+K + + + + L +WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF +L P Y R S AV+VYDIT+ +SF++ W+ +++ G+D+ + + GNK DL +
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
R + E+ E+ A+ + + TSAK ++++F ++ +LE
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K++L+G+ VGK+ +++R+VEDKFN ITT+ F K ++I GK++ L +WDTAGQER
Sbjct: 9 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136
F + YYR + G +LVYD+TDE +F +K W K + + ++ L + GNK D+E R
Sbjct: 69 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TR 127
Query: 137 TVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
V + E A+ +G +SAK + + E+F L++ + EK
Sbjct: 128 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 170
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 105/172 (61%), Gaps = 4/172 (2%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
N Y FK++L+G+ VGK ++LR+ +D + E +I+T+ F + + + GK + L I
Sbjct: 10 NPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 69
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGN 128
WDTAGQERF + YYR ++G ++VYD+TD++SF VK W++E+ + ++ + GN
Sbjct: 70 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
Query: 129 KIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL----ELSQRM 176
K DL ++ V A+++A S+G TSAK +E+ F+ E+ +RM
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 104/175 (59%), Gaps = 1/175 (0%)
Query: 4 NSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKR 63
S D + + FK+VL+G+ VGKT VV R+ F+E+ +T+ F K L I GKR
Sbjct: 18 GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR 77
Query: 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICL 123
+ L IWDTAGQERF + YYR +NGA+L YDIT SF V +W+++++K G++I
Sbjct: 78 VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQ 137
Query: 124 TIAGNKIDLEKQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
+ GNK DL + R V +A+ A+ + TSAK + +EE FL ++ ++
Sbjct: 138 LLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 133 bits (335), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 105/167 (62%), Gaps = 4/167 (2%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++L+G+ VGK+ ++LR+ +D + E +I+T+ F + + + GK + L IWDTAG
Sbjct: 5 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 64
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR ++G ++VYD+TD++SF VK W++E+ + ++ + GNK DL
Sbjct: 65 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL----ELSQRM 176
++ V A+++A S+G TSAK +E+ F+ E+ +RM
Sbjct: 125 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 133 bits (335), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 108/177 (61%), Gaps = 3/177 (1%)
Query: 6 LDRNSSSTYSFK--VVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKR 63
+ R S FK V+++G VGKTS++ R+ +D F E +T+ F K + + GK+
Sbjct: 15 VPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKK 74
Query: 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICL 123
+ L IWDTAGQERF+++ YYR + G +LVYDIT +++F+ + W+K + K D L
Sbjct: 75 IRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAEL 134
Query: 124 TIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRMLEK 179
+ GNK+D E R + ++ EK+AQ + + F SAK N ++E+FL+L +L+K
Sbjct: 135 LLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 133 bits (335), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 105/167 (62%), Gaps = 4/167 (2%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++L+G+ VGK+ ++LR+ +D + E +I+T+ F + + + GK + L IWDTAG
Sbjct: 24 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 83
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR ++G ++VYD+TD++SF VK W++E+ + ++ + GNK DL
Sbjct: 84 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 143
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL----ELSQRM 176
++ V A+++A S+G TSAK +E+ F+ E+ +RM
Sbjct: 144 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 190
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 133 bits (334), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 101/163 (61%), Gaps = 1/163 (0%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K++L+G+ VGK+ +++R+VEDKFN ITT+ F K ++I GK++ L +WDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136
F + YYR + G +LVYD+TDE +F +K W K + + ++ L + GNK D E R
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXE-TR 123
Query: 137 TVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
V + E A+ +G +SAK + + E+F L++ + EK
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 105/167 (62%), Gaps = 4/167 (2%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++L+G+ VGK+ ++LR+ +D + E +I+T+ F + + + GK + L IWDTAG
Sbjct: 8 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 67
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR ++G ++VYD+TD++S+ VK W++E+ + ++ + GNK DL
Sbjct: 68 QERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL----ELSQRM 176
++ V A+++A S+G TSAK +E+ F+ E+ +RM
Sbjct: 128 TKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 104/165 (63%), Gaps = 4/165 (2%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK++L+G+ VGK+ ++LR+ +D + E +I+T+ F + + + GK + L IWDTAGQE
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF + YYR ++G ++VYD+TD++SF VK W++E+ + ++ + GNK DL +
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL----ELSQRM 176
+ V A+++A S+G TSAK +E+ F+ E+ +RM
Sbjct: 127 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 97/154 (62%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+V LGE VGKTS++ R++ D F+ + T+ FL+K + + + + L +WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF +L P Y R S AV+VYDIT+ +SF + W+ +++ G+D+ + + GNK DL +
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
R V E+ E+ A+ + + TSAK ++++F
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 100/161 (62%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
N Y FK++L+G+ VGK+ ++LR+ +D + E +I+T+ F + + + GK + L I
Sbjct: 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 86
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGN 128
WDTAGQERF + YYR ++G ++VYD+TD++SF VK W++E+ + ++ + GN
Sbjct: 87 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146
Query: 129 KIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
K DL ++ V A+++A S+G TSAK +E+ F
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 98/154 (63%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+V LGE VGKTS++ R++ D F+ + T+ FL+K + + + + L +WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF +L P Y R S AV+VYDIT+ +SF++ W+ +++ G+D+ + + GNK DL +
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
R V E+ E+ A+ + + TSAK ++++F
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 105/167 (62%), Gaps = 4/167 (2%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++L+G+ VGK+ ++LR+ +D + E +I+T+ F + + + GK + L IWDTAG
Sbjct: 8 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 67
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR ++G ++VYD+TD++S+ VK W++E+ + ++ + GNK DL
Sbjct: 68 QERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL----ELSQRM 176
++ V A+++A S+G TSAK +E+ F+ E+ +RM
Sbjct: 128 TKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 125/213 (58%), Gaps = 10/213 (4%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
NS Y FK++L+G VGK+ ++LR+ +D + +I+T+ F K + + GK + L I
Sbjct: 2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGN 128
WDTAGQERF + YYR S+G ++VYD+TD++SF VK W++E+ + + + + GN
Sbjct: 62 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 129 KIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKA 188
K DL+ +R V + A+++A + TSA + +E+ FL +++++ E + +L
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL--- 178
Query: 189 SELSRRGSMRRNVVVVEDEDLPTSSSTKS-GCC 220
+E +++ + NV +L S T + GCC
Sbjct: 179 NETTQKKEDKGNV------NLKGQSLTNTGGCC 205
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 125/212 (58%), Gaps = 7/212 (3%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
NS Y FK++L+G VGK+ ++LR+ +D + +I+T+ F K + + GK + L I
Sbjct: 2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGN 128
WDTAGQERF + YYR S+G ++VYD+TD++SF VK W++E+ + + + + GN
Sbjct: 62 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 129 KIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKA 188
K DL+ +R V + A+++A + TSA + +E+ FL +++++ E + +L
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL--- 178
Query: 189 SELSRRGSMRRNVVVVEDEDLPTSSSTKSGCC 220
+E +++ + NV + + ++T GCC
Sbjct: 179 NETTQKKEDKGNVNLKG----QSLTNTGGGCC 206
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 105/170 (61%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
S+ Y FK +++G+ VGK+ ++L++ + +F H T+ F + + I GK++ L IW
Sbjct: 5 SAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 64
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNK 129
DTAGQE F ++ YYR + GA+LVYDIT D+F + W+++ ++ +++ + + GNK
Sbjct: 65 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 124
Query: 130 IDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
DLE +R V +E+ E +A+ G + TSAK +EE F+ ++ + EK
Sbjct: 125 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEK 174
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 105/172 (61%), Gaps = 4/172 (2%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
N Y FK++L+G+ VGK+ ++LR+ +D + E +I+T+ F + + + GK + L I
Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGN 128
WDTAGQERF + YYR ++G ++VYD+TD++SF VK W++E+ + ++ + G
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGI 121
Query: 129 KIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL----ELSQRM 176
K DL ++ V A+++A S+G TSAK +E+ F+ E+ +RM
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 173
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 98/154 (63%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+V LGE VGKTS++ R++ D F+ + T+ FL+K + + + + L +WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF +L P Y R S AV+VYDIT+ +SF++ W+ +++ G+D+ + + GNK DL +
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
R V E+ E+ A+ + + TSAK ++++F
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 155
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 130 bits (327), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 99/171 (57%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDT 71
S Y FK++L+G VGKTS + RY +D F ++T+ F K + KR+ L IWDT
Sbjct: 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDT 78
Query: 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKID 131
AGQER+ + YYR + G +L+YDI +++SF V++W ++K ++ + + GNK D
Sbjct: 79 AGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCD 138
Query: 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
LE +R V ED + A +G F SAK N ++++F L + EK E
Sbjct: 139 LEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 130 bits (326), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 104/173 (60%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
N Y FK++L+G+ VGK+ ++LR+ +D + + +I+T+ F + +++ K + L I
Sbjct: 3 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQI 62
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGN 128
WDTAGQERF + YYR ++G ++VYD+TD DSF+ VK W++E+ + ++ + GN
Sbjct: 63 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGN 122
Query: 129 KIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
K DL +R V ++ + A S G TSAK +E+ F ++ + ++ Q
Sbjct: 123 KCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRVQ 175
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 107/170 (62%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
+Y FK +++G+ VGK+ ++L++ + +F H T+ F + +NI GK++ L IWDTA
Sbjct: 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTA 78
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQE F ++ YYR + GA+LVYDIT ++F + +W+++ ++ +++ + + GNK DL
Sbjct: 79 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL 138
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
E +R V +E+ E +A+ G + TSAK +EE F+ ++ + K Q+
Sbjct: 139 ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 103/164 (62%), Gaps = 4/164 (2%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K++L+G+ VGK+ ++LR+ +D + E +I+T+ F + + + GK + L IWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136
F + YYR ++G ++VYD+TD++SF VK W++E+ + ++ + GNK DL ++
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 137 TVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL----ELSQRM 176
V A+++A S+G TSAK +E+ F+ E+ +RM
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 102/165 (61%), Gaps = 2/165 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+ K++++GE VGK+S++LR+ +D F+ + T+ F K +++ G + LAIWDTAGQ
Sbjct: 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLE 133
ERF L P YYR + G +LVYD+T D+F K+ NW+ EL+ NDI + GNKID E
Sbjct: 75 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKE 134
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
R V + + K+A+ + SAK G++ F EL +++++
Sbjct: 135 -NREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQ 178
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 106/171 (61%)
Query: 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLA 67
R S Y FK++L+G VGK+ ++LR+ +D + +I+T+ F K + + GK + L
Sbjct: 14 RGSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 73
Query: 68 IWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAG 127
IWDTAGQERF + YYR S+G ++VYD+TD++SF VK W++E+ + + + + G
Sbjct: 74 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 133
Query: 128 NKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
NK DL+ +R V + A+++A + TSA + +E+ FL +++++ E
Sbjct: 134 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 184
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 97/154 (62%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+V LGE VGKTS++ R++ D F+ + T+ FL+K + + + + L +WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF +L P Y R S AV+VYDIT+ +SF++ W+ +++ G+D+ + + GNK DL +
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
R V E+ E+ A+ + + TSAK ++++F
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 167
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 97/154 (62%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+V LGE VGKTS++ R++ D F+ + T+ FL+K + + + + L +WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF +L P Y R S AV+VYDIT+ +SF++ W+ +++ G+D+ + + GNK DL +
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
R V E+ E+ A+ + + TSAK ++++F
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 97/154 (62%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+V LGE VGKTS++ R++ D F+ + T+ FL+K + + + + L +WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF +L P Y R S AV+VYDIT+ +SF++ W+ +++ G+D+ + + GNK DL +
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
R V E+ E+ A+ + + TSAK ++++F
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 170
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 117/210 (55%), Gaps = 5/210 (2%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VL+G+ VGK++++ R+ +++FN +T+ F + L I GKR+ IWDTAGQE
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+ A+ YYR + GA++VYDI+ S+E +W+ EL++ +++ + + GNK DL
Sbjct: 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKA--QEFDLAKAS-ELS 192
R V E+++ +AQ + TSA + +++ F EL + +K + DL +S +
Sbjct: 134 RAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGN 193
Query: 193 RRGSMRRNVVVVEDEDLPTSSSTKSG--CC 220
G+ N + P + +G CC
Sbjct: 194 ANGASAPNGPTISLTPTPNENKKANGNNCC 223
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 96/166 (57%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++++G VGKTS + RY +D F ++T+ F K + KR+ L IWDTAG
Sbjct: 4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 63
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QER+ + YYR + G +L+YDIT+E+SF V++W ++K ++ + + GNK D+E
Sbjct: 64 QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 123
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+R V E + A +G F SAK N +++ F L + EK
Sbjct: 124 DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 97/166 (58%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++++G VGKTS + RY +D F ++T+ F K + KR+ L IWDTAG
Sbjct: 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAG 81
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QER+ + YYR + G +L+YDIT+E+SF V++W ++K ++ + + GNK D+E
Sbjct: 82 QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
++R V E + A+ +G F SAK N + + F L + +K
Sbjct: 142 EERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDK 187
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 124 bits (312), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 93/161 (57%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V LGE VGKTS++ R+ D F+ + +T+ FL+K L + + L +WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF +L P Y R S A++VYDIT+ SFE W++++ G D+ + + GNK DL
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R V E+ + AQ TSAK I+ +F + + ++
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 94/169 (55%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++++G VGKTS + RY +D F ++T+ F K + KR+ L IWDTAG
Sbjct: 7 YXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 66
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
ER+ + YYR + G +L YDIT+E+SF V++W ++K ++ + + GNK D E
Sbjct: 67 LERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXE 126
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+R V E + A +G F SAK N +++ F L + EK E
Sbjct: 127 DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSE 175
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 102/166 (61%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
+Y FK +++G+ VGK+ ++ ++ E KF T+ F + + ++G+++ L IWDTA
Sbjct: 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 72
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQERF A+ YYR + GA++VYDIT ++ + +W+ + + + + + + GNK DL
Sbjct: 73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL 132
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
E QR V E+A+++A+ G + SAK +E+ FLE ++++ +
Sbjct: 133 EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 109/173 (63%), Gaps = 7/173 (4%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRL-NLAIWDTAGQ 74
KV++LG+ VGKTS++ RYV DK+++++ T+ A FL K++ + G ++ + +WDTAGQ
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKI 130
ERF +LG +YR ++ VLVYD+T+ SFE +K+W E + I GNKI
Sbjct: 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128
Query: 131 DLEKQRTVMQE-DAEKYAQSVGAVH-FHTSAKMNRGIEEMFLELSQRMLEKAQ 181
D E+ + ++ E A++ A+S+G + F TSAK ++ F E+++ L++ Q
Sbjct: 129 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 181
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 96/162 (59%)
Query: 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLA 67
R+ Y FKVVL+G+ VGK++++ R+ ++FN + +T+ F + + + GK +
Sbjct: 22 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 81
Query: 68 IWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAG 127
IWDTAGQER+ A+ YYR + GA+LVYDI ++E V+ W+KEL+ ++I + + G
Sbjct: 82 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 141
Query: 128 NKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
NK DL R V ++A +A+ G TSA + +E F
Sbjct: 142 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 102/169 (60%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
+Y FK +++G+ VGK+ ++ ++ E KF T+ F + + ++G+++ L IWDTA
Sbjct: 28 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 87
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQ RF A+ YYR + GA++VYDIT ++ + +W+ + + + + + + GNK DL
Sbjct: 88 GQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL 147
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
E QR V E+A+++A+ G + SAK +E+ FLE ++++ + Q
Sbjct: 148 EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQ 196
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 97/165 (58%)
Query: 5 SLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRL 64
SL S Y FKVVL+G+ VGK++++ R+ ++FN + +T+ F + + + GK +
Sbjct: 10 SLVPRGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 69
Query: 65 NLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLT 124
IWDTAGQER+ A+ YYR + GA+LVYDI ++E V+ W+KEL+ ++I +
Sbjct: 70 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 129
Query: 125 IAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
+ GNK DL R V ++A +A+ G TSA + +E F
Sbjct: 130 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 174
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 105/177 (59%), Gaps = 2/177 (1%)
Query: 11 SSTYSF--KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
S TY F K +++G GK+ ++ +++E KF + T+ F +K +N+ GK + L I
Sbjct: 4 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 63
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGN 128
WDTAGQERF ++ YYR + GA+LVYDIT +++ + NW+ + + + +I + + GN
Sbjct: 64 WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 123
Query: 129 KIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDL 185
K DL+ R V +A ++AQ + TSA +EE F++ ++++L K + +L
Sbjct: 124 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGEL 180
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 102/171 (59%), Gaps = 2/171 (1%)
Query: 11 SSTYSF--KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
S TY F K +++G GK+ ++ +++E KF + T+ F +K +N+ GK + L I
Sbjct: 5 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 64
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGN 128
WDTAGQERF ++ YYR + GA+LVYDIT +++ + NW+ + + + +I + + GN
Sbjct: 65 WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 124
Query: 129 KIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
K DL+ R V +A ++AQ + TSA +EE F++ ++++L K
Sbjct: 125 KKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 175
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 98/160 (61%), Gaps = 1/160 (0%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLA-IWDTA 72
Y FK+VL+G+ VGK++++ R+ D+FN + +T+ F K + + ++ A IWDTA
Sbjct: 6 YLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTA 65
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQER+ A+ YYR + GA+LVYDIT ++SFE ++ W+KEL+ ++I + + GNK DL
Sbjct: 66 GQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDL 125
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172
+ R + DA +YA+ TSA +E F +L
Sbjct: 126 KHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQL 165
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 120 bits (301), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+FKV+L+G+ VGKT +++R+ + F I+T+ F NK L++ G ++ L +WDTAG
Sbjct: 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 69
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF ++ YYR ++ +L+YD+T++ SF+ ++ W+ E+ + +D+ L + GNK+D
Sbjct: 70 QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
+R V +ED EK A+ G TSAK ++ F +++ +
Sbjct: 130 HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 101/168 (60%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDT 71
S + FK +++G GK+ ++ +++E+KF + T+ F ++ +N+ GK + L IWDT
Sbjct: 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDT 81
Query: 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKID 131
AGQERF ++ YYR + GA+LVYDIT +++ + W+ + + + +I + + GNK D
Sbjct: 82 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKD 141
Query: 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
L+ +R V +A ++AQ + TSA +EE FL+ ++ +L K
Sbjct: 142 LDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNK 189
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 105/181 (58%), Gaps = 14/181 (7%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA----------GKR 63
Y K + LG+ VGKTSV+ +Y + KFN K ITT+ F K++ G+R
Sbjct: 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQR 69
Query: 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELK-KMLGNDIC 122
++L +WDTAG ERF +L ++R + G +L++D+T+E SF V+NW+ +L+ +
Sbjct: 70 IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD 129
Query: 123 LTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIE---EMFLELSQRMLEK 179
+ + GNK DLE QR V +E+A + A+ G +F TSA I EM L+L + +E+
Sbjct: 130 IVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMER 189
Query: 180 A 180
+
Sbjct: 190 S 190
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 95/162 (58%)
Query: 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLA 67
R+ Y FKVVL+G+ VGK++++ R+ ++FN + +T+ F + + + GK +
Sbjct: 4 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 63
Query: 68 IWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAG 127
IWDTAG ER+ A+ YYR + GA+LVYDI ++E V+ W+KEL+ ++I + + G
Sbjct: 64 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVG 123
Query: 128 NKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
NK DL R V ++A +A+ G TSA + +E F
Sbjct: 124 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 165
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 95/162 (58%)
Query: 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLA 67
R+ Y FKVVL+G+ VGK++++ R+ ++FN + +T+ F + + + GK +
Sbjct: 22 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 81
Query: 68 IWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAG 127
IWDTAG ER+ A+ YYR + GA+LVYDI ++E V+ W+KEL+ ++I + + G
Sbjct: 82 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 141
Query: 128 NKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
NK DL R V ++A +A+ G TSA + +E F
Sbjct: 142 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 93/156 (59%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FKVVL+G+ VGK++++ R+ ++FN + +T+ F + + + GK + IWDTAG
Sbjct: 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 63
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QER+ + YYR + GA+LVYDI ++E V+ W+KEL+ ++I + + GNK DL
Sbjct: 64 QERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
R V ++A +A+ TSA + +EE F
Sbjct: 124 HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 159
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 101/171 (59%), Gaps = 2/171 (1%)
Query: 11 SSTYSF--KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
S TY F K +++G GK+ ++ +++E KF + T+ F +K +N+ GK + L I
Sbjct: 2 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 61
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGN 128
WDTAG ERF ++ YYR + GA+LVYDIT +++ + NW+ + + + +I + + GN
Sbjct: 62 WDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 121
Query: 129 KIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
K DL+ R V +A ++AQ + TSA +EE F++ ++++L K
Sbjct: 122 KKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 172
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 93/156 (59%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FKVVL+G+ VGK++++ R+ ++FN + +T+ F + + + GK + IWDTAG
Sbjct: 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 63
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
ER+ A+ YYR + GA+LVYDI ++E V+ W+KEL+ ++I + + GNK DL
Sbjct: 64 LERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLR 123
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
R V ++A +A+ G TSA + +E F
Sbjct: 124 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 159
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 93/156 (59%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FKVVL+G+ VGK++++ R+ ++FN + +T+ F + + + GK + IWDTAG
Sbjct: 7 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 66
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
ER+ A+ YYR + GA+LVYDI ++E V+ W+KEL+ ++I + + GNK DL
Sbjct: 67 LERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 126
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
R V ++A +A+ G TSA + +E F
Sbjct: 127 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 162
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 117 bits (292), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 96/167 (57%), Gaps = 6/167 (3%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK++LLG+G VGK+S++ RYV +KF+ + T+ FLNK L + G + + IWDTAGQE
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML----GNDICLTIAGNKID 131
RF +L +YR S+ +L + + D SF+ + NW KE I GNK D
Sbjct: 72 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTD 131
Query: 132 LEKQRTVMQEDAEKYAQSVG-AVHFHTSAKMNRGIEEMFLELSQRML 177
+ K+R V E+A+ + + G +F TSAK + + F E +R+L
Sbjct: 132 I-KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRIL 177
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 95/167 (56%), Gaps = 6/167 (3%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FKV+LLG+G VGK+S++ RYV +KF+ + T+ FLNK L + G + + IWDTAGQE
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML----GNDICLTIAGNKID 131
RF +L +YR S+ +L + + D SF+ + NW KE I GNKID
Sbjct: 68 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127
Query: 132 LEKQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
+ +R V E+A+ + + G +F TSAK + F E +R+L
Sbjct: 128 I-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 95/167 (56%), Gaps = 6/167 (3%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FKV+LLG+G VGK+S++ RYV +KF+ + T+ FLNK L + G + + IWDTAGQE
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML----GNDICLTIAGNKID 131
RF +L +YR S+ +L + + D SF+ + NW KE I GNKID
Sbjct: 70 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 129
Query: 132 LEKQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
+ +R V E+A+ + + G +F TSAK + F E +R+L
Sbjct: 130 I-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 99/175 (56%), Gaps = 6/175 (3%)
Query: 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLA 67
++ SS ++K+VL G+ VGK+S ++R +++F E TL F K L + G+R L
Sbjct: 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQ 80
Query: 68 IWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAG 127
+WDTAGQERF ++ Y+R ++G +L+YD+T E SF ++ WV ++ + + + G
Sbjct: 81 LWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVG 140
Query: 128 NKIDL------EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
NK D+ E Q+ V EK A + GA+ TSAK I E L L++ +
Sbjct: 141 NKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 114 bits (284), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 104/186 (55%), Gaps = 20/186 (10%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKL--NIAGK--------R 63
Y K++ LG+ VGKT+ + RY ++KFN K ITT+ F K++ N G +
Sbjct: 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFK 83
Query: 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC- 122
++L +WDTAGQERF +L ++R + G +L++D+T + SF V+NW+ +L+ N C
Sbjct: 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ---ANAYCE 140
Query: 123 ---LTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIE---EMFLELSQRM 176
+ + GNK DL QR V + A + A G +F TSA + +E E L+L +
Sbjct: 141 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 200
Query: 177 LEKAQE 182
+E+ E
Sbjct: 201 MEQCVE 206
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 105/186 (56%), Gaps = 20/186 (10%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKL--------NIAGK--R 63
Y K++ LG+ VGKT+ + RY ++KFN K ITT+ F K++ +GK +
Sbjct: 10 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFK 69
Query: 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC- 122
++L +WDTAG ERF +L ++R + G +L++D+T + SF V+NW+ +L+ N C
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ---ANAYCE 126
Query: 123 ---LTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIE---EMFLELSQRM 176
+ + GNK DL QR V + A + A+ G +F TSA + +E E L+L +
Sbjct: 127 NPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKR 186
Query: 177 LEKAQE 182
+EK E
Sbjct: 187 MEKCVE 192
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 105/186 (56%), Gaps = 20/186 (10%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKL--------NIAGK--R 63
Y K++ LG+ VGKT+ + RY ++KFN K ITT+ F K++ +GK +
Sbjct: 10 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFK 69
Query: 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC- 122
++L +WDTAG ERF +L ++R + G +L++D+T + SF V+NW+ +L+ N C
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ---ANAYCE 126
Query: 123 ---LTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIE---EMFLELSQRM 176
+ + GNK DL QR V + A + A+ G +F TSA + +E E L+L +
Sbjct: 127 NPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKR 186
Query: 177 LEKAQE 182
+EK E
Sbjct: 187 MEKCVE 192
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 96/159 (60%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK+VL+G+ VGK++++ R+ D+FN + +T+ F + + + K++ IWDTAG
Sbjct: 9 YLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAG 68
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
ER+ A+ YYR + GA++VYDI+ S+E +W+ EL++ +++ + + GNK DL
Sbjct: 69 LERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLA 128
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172
R V ++A+ +A + TSA + +++ F EL
Sbjct: 129 HLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFREL 167
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 101/177 (57%), Gaps = 5/177 (2%)
Query: 5 SLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRL 64
SL S + FK++++G+ VGKT + R+ +F ++ T+ F + ++I G+R+
Sbjct: 10 SLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERI 69
Query: 65 NLAIWDTAGQERFH-ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKK-MLGNDIC 122
+ +WDTAGQERF ++ YYR + V VYD+T+ SF + W++E K+ +L NDI
Sbjct: 70 KIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP 129
Query: 123 LTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM---NRGIEEMFLELSQRM 176
+ GNK DL V + A+K+A + F TSAK N +E +F+ L+ ++
Sbjct: 130 RILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 103/175 (58%), Gaps = 6/175 (3%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
KV++LG+ VGKTS++ +YV KF+ ++ T+ A FL K++ + + + + IWDTAGQE
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKEL----KKMLGNDICLTIAGNKID 131
RF +LG +YR ++ VLV+D+T ++F+ + +W E + + GNKID
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 132 LEKQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQRMLEKAQEFDL 185
LE R V + A+ + S + +F TSAK +E+ F +++ L++ E +L
Sbjct: 129 LE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 182
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 102/186 (54%), Gaps = 20/186 (10%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKL--------NIAGK--R 63
Y K++ LG+ VGKT+ + RY ++KFN K ITT+ F K++ +GK +
Sbjct: 10 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFK 69
Query: 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC- 122
++L +WDTAG ERF +L ++R + G +L +D+T + SF V+NW +L+ N C
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ---ANAYCE 126
Query: 123 ---LTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIE---EMFLELSQRM 176
+ + GNK DL QR V + A + A+ G +F TSA + +E E L+L +
Sbjct: 127 NPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKR 186
Query: 177 LEKAQE 182
EK E
Sbjct: 187 XEKCVE 192
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 103/174 (59%), Gaps = 6/174 (3%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
KV++LG+ VGKTS++ +YV KF+ ++ T+ A FL K++ + + + + IWDTAGQER
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKEL----KKMLGNDICLTIAGNKIDL 132
F +LG +YR ++ VLV+D+T ++F+ + +W E + + GNKIDL
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 133 EKQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQRMLEKAQEFDL 185
E R V + A+ + S + +F TSAK +E+ F +++ L++ E +L
Sbjct: 130 E-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 182
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 5/166 (3%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK++++G+ VGKT + R+ +F ++ T+ F + ++I G+R+ + +WDTAGQE
Sbjct: 30 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 76 RFH-ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKK-MLGNDICLTIAGNKIDLE 133
RF ++ YYR + V VYD T+ SF + W++E K+ +L NDI + GNK DL
Sbjct: 90 RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 149
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKM---NRGIEEMFLELSQRM 176
V + A+K+A + F TSAK N +E +F L+ ++
Sbjct: 150 SAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 102/186 (54%), Gaps = 20/186 (10%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKL--------NIAGK--R 63
Y K++ LG+ VGKT+ + RY ++KFN K ITT+ F K++ +GK +
Sbjct: 10 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFK 69
Query: 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC- 122
++L +WDTAG ERF +L ++R + G +L +D+T + SF V+NW +L+ N C
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ---ANAYCE 126
Query: 123 ---LTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIE---EMFLELSQRM 176
+ + GNK DL QR V + A + A+ G +F TSA + +E E L+L +
Sbjct: 127 NPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKR 186
Query: 177 LEKAQE 182
EK E
Sbjct: 187 XEKCVE 192
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 102/174 (58%), Gaps = 6/174 (3%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
KV++LG+ VGKTS++ +YV KF+ ++ T+ A FL K++ + + + + IWDTAGQER
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKEL----KKMLGNDICLTIAGNKIDL 132
F +LG +YR ++ VLV+D+T ++F+ + +W E + + GNKID
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDF 129
Query: 133 EKQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQRMLEKAQEFDL 185
E R V + A+ + S + +F TSAK +E+ F +++ L++ E +L
Sbjct: 130 E-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 182
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 110 bits (274), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 98/168 (58%), Gaps = 1/168 (0%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDT 71
S + K+V++G G VGK+S++ RY + F + + T+ FL +++ + + + L +WDT
Sbjct: 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61
Query: 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKID 131
AGQE F A+ YYR + VLV+ TD +SFE + +W +++ +G DI + NKID
Sbjct: 62 AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKID 120
Query: 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
L + E+AE A+ + + TS K + + E+F L+++ L+K
Sbjct: 121 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 90/156 (57%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+ FKVVL+GE VGKT+++ R+ ++F+ TT+ F + + + + IWDTAG
Sbjct: 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAG 83
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
ER+ A+ YYR + GA+LV+D+T ++ V+ W+KEL I + + GNK DL
Sbjct: 84 LERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
+ R V E+A +A++ G + TSA + +E F
Sbjct: 144 QAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 179
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 90/156 (57%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+ FKVVL+GE VGKT+++ R+ ++F+ TT+ F + + + + IWDTAG
Sbjct: 9 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAG 68
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
ER+ A+ YYR + GA+LV+D+T ++ V+ W+KEL I + + GNK DL
Sbjct: 69 LERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 128
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
+ R V E+A +A++ G + TSA + +E F
Sbjct: 129 QAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 164
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 102/175 (58%), Gaps = 6/175 (3%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
KV++LG+ VGKTS++ +YV KF+ ++ T+ A FL K++ + + + + IWDTAG E
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKEL----KKMLGNDICLTIAGNKID 131
RF +LG +YR ++ VLV+D+T ++F+ + +W E + + GNKID
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 132 LEKQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQRMLEKAQEFDL 185
LE R V + A+ + S + +F TSAK +E+ F +++ L++ E +L
Sbjct: 129 LE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 182
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
S + KV+LLG+G VGK+S++ RYV +KF+ + T+ FLN+ L + G+ + L IW
Sbjct: 2 SGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIW 61
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML----GNDICLTI 125
DTAGQERF +L +YR ++ +L + + D SFE + NW KE +
Sbjct: 62 DTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVV 121
Query: 126 AGNKIDLEKQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
GNK+D E R V E+A+ + G + TSAK + + F E +++L
Sbjct: 122 LGNKVDKE-DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 106 bits (265), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 77/115 (66%)
Query: 18 VVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF 77
++L+G+ VGK+ ++LR+ +D + E +I+T+ F + + + GK + L IWDTAGQERF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 78 HALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
+ YYR ++G ++VYD+TD++SF VK W++E+ + ++ + GNK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 40/199 (20%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGK------------ 62
S+K VLLGE VGK+S+VLR +D F+E TT+ ASF +N+
Sbjct: 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNN 66
Query: 63 -------------------------RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDI 97
+ IWDTAGQER+ ++ P+YYR + A++V+DI
Sbjct: 67 NINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDI 126
Query: 98 TDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHT 157
++ ++ ++ K WV +LK + ++ + + NKID K + + E +KYAQ + T
Sbjct: 127 SNSNTLDRAKTWVNQLK--ISSNYIIILVANKIDKNKFQVDILE-VQKYAQDNNLLFIQT 183
Query: 158 SAKMNRGIEEMFLELSQRM 176
SAK I+ +F L++ +
Sbjct: 184 SAKTGTNIKNIFYMLAEEI 202
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
SS KV+++G G VGK+++ L+++ D+F E + T S+ KK+ + G+ + + I D
Sbjct: 3 SSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILD 61
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND--ICLTIAGN 128
TAG E + A+ Y+R G +LV+ IT+ +SF + +++ ++ + I L + GN
Sbjct: 62 TAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGN 121
Query: 129 KIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172
K DLE++R V E+A A+ G + TSAK ++++F +L
Sbjct: 122 KSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDL 165
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
KV+++G G VGK+++ L+++ D+F E + T S+ KK+ + G+ + + I DTAG E
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGLED 63
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND--ICLTIAGNKIDLEK 134
+ A+ Y+R G +LV+ IT+ +SF + +++ ++ + I L + GNK DLE+
Sbjct: 64 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172
+R V E+A A+ G + TSAK ++++F +L
Sbjct: 124 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDL 161
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V++G VGK+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEK 134
+ A+ Y R G + V+ I + SFE + + +++K++ +D+ + + GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172
RTV A+ A+S G + TSAK +G+E+ F L
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 94/165 (56%), Gaps = 9/165 (5%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQA-----SFLNKKLNIAGKRLNLAIW 69
++K+ L+G+G VGKT+ + R ++ +F + + T+ A +FL+ + N+ + +W
Sbjct: 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNV----IKFNVW 66
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNK 129
DTAGQE+ L +YY ++GA+L +D+T + + + WVKE + ++GN+ + + NK
Sbjct: 67 DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANK 126
Query: 130 IDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174
ID++ ++ + ++ + + +F SAK FL L++
Sbjct: 127 IDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLAR 171
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 94/173 (54%), Gaps = 17/173 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+G GKT +++ + +D+F E ++ T+ +++ + + GK++ LA+WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 67
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLE-- 133
+ L P+ Y ++ ++ + I DS E + + W E+K N + + + GNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 126
Query: 134 ----------KQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQR 175
KQ V E+ A +GA + SAK G+ E+F E++ R
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 178
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 96/179 (53%), Gaps = 17/179 (9%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
S+ K+V++G+G GKT +++ + +D+F E ++ T+ +++ + + GK++ LA+WD
Sbjct: 5 SAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWD 63
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNK 129
TAGQE + L P+ Y ++ ++ + I DS E + + W E+K N + + + GNK
Sbjct: 64 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNK 122
Query: 130 IDLE------------KQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQR 175
DL KQ V E+ A +GA + SAK G+ E+F E++ R
Sbjct: 123 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 180
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V++G VGK+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEK 134
+ A+ Y R G + V+ I + SFE + + +++K++ +D+ + + GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172
RTV A+ A+S G + TSAK +G+E+ F L
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 94/173 (54%), Gaps = 17/173 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+G GKT +++ + +D+F E ++ T+ +++ + + GK++ LA+WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 66
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLE-- 133
+ L P+ Y ++ ++ + I DS E + + W E+K N + + + GNK DL
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 125
Query: 134 ----------KQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQR 175
KQ V E+ A +GA + SAK G+ E+F E++ R
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 177
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 97/179 (54%), Gaps = 17/179 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+G GKT +++ + +D+F E ++ T+ +++ + + GK++ LA+WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 65
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLE-- 133
+ L P+ Y ++ ++ + I DS E + + W E+K N + + + GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
Query: 134 ----------KQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
KQ V E+ A +GA + SAK G+ E+F E++ R +A+
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQAR 182
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 97/179 (54%), Gaps = 17/179 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+G GKT +++ + +D+F E ++ T+ +++ + + GK++ LA+WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 67
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLE-- 133
+ L P+ Y ++ ++ + I DS E + + W E+K N + + + GNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 126
Query: 134 ----------KQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
KQ V E+ A +GA + SAK G+ E+F E++ R +A+
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQAR 184
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 97/179 (54%), Gaps = 17/179 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+G GKT +++ + +D+F E ++ T+ +++ + + GK++ LA+WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 68
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLE-- 133
+ L P+ Y ++ ++ + I DS E + + W E+K N + + + GNK DL
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 127
Query: 134 ----------KQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
KQ V E+ A +GA + SAK G+ E+F E++ R +A+
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQAR 185
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
FK+VL+G+G GKT+ V R++ +F +K++ TL + + +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
E+F L YY + A++++D+T +++ V NW ++L ++ N I + + GNK+D++
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKD 128
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
++ ++ + + + ++ SAK N E+ FL L+++++
Sbjct: 129 RK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V++G VGK+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEK 134
+ A+ Y R G + V+ I + SFE + + +++K++ +D+ + + GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172
RTV A+ A+S G + TSAK +G+E+ F L
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
FK+VL+G+G GKT+ V R++ +F +K++ TL + + +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
E+F L YY + A++++D+T +++ V NW ++L ++ N I + + GNK+D++
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKD 128
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
++ ++ + + + ++ SAK N E+ FL L+++++
Sbjct: 129 RK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VL+G+G GKT+ V R++ +F +K++ TL + + +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
+F L YY + A++++D+T +++ V NW ++L ++ N I + + GNK+D++ +
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKDR 134
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
+ ++ + + + ++ SAK N E+ FL L+++++
Sbjct: 135 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 174
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 97/179 (54%), Gaps = 17/179 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+G GKT +++ + +D+F E ++ T+ +++ + + GK++ LA+WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 67
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLE-- 133
+ L P+ Y ++ ++ + I DS E + + W E+K N + + + GNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 126
Query: 134 ----------KQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
KQ V E+ A +GA + SAK G+ E+F E++ R +A+
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQAR 184
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
FK+VL+G+G GKT+ V R++ +F +K++ TL + + +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
E+F L YY + A++++D+T +++ V NW ++L ++ N I + + GNK+D++
Sbjct: 70 EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKD 128
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
++ ++ + + + ++ SAK N E+ FL L+++++
Sbjct: 129 RK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
FK+VL+G+G GKT+ V R++ +F +K++ TL + + +WDTAGQ
Sbjct: 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
E+F L YY + A++++D+T +++ V NW ++L ++ N I + + GNK+D++
Sbjct: 63 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKD 121
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
++ ++ + + + ++ SAK N E+ FL L+++++
Sbjct: 122 RK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 162
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
FK+VL+G+G GKT+ V R++ +F +K++ TL + + +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
E+F L YY + A++++D+T +++ V NW ++L ++ N I + + GNK+D++
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKD 128
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
++ ++ + + + ++ SAK N E+ FL L+++++
Sbjct: 129 RK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V++G VGK+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEK 134
+ A+ Y R G + V+ I + SFE + + +++K++ +D+ + + GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172
RTV A+ A+S G + TSAK +G+E+ F L
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
FK+VL+G+G GKT+ V R++ +F +K++ TL + + +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
E+F L YY + A++++D+T +++ V NW ++L ++ N I + + GNK+D++
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKD 128
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
++ ++ + + + ++ SAK N E+ FL L+++++
Sbjct: 129 RK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
FK+VL+G+G GKT+ V R++ +F +K++ TL + + +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
E+F L YY + A++++D+T +++ V NW ++L ++ N I + + GNK+D++
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKD 128
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
++ ++ + + + ++ SAK N E+ FL L+++++
Sbjct: 129 RK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
FK+VL+G+G GKT+ V R++ +F +K++ TL + + +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
E+F L YY + A++ +D+T +++ V NW ++L ++ N I + + GNK+D++
Sbjct: 70 EKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKD 128
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
++ ++ + + + ++ SAK N E+ FL L+++++
Sbjct: 129 RK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 96/177 (54%), Gaps = 16/177 (9%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
S KVVL+G+G GKTS+++ + + F E + T+ ++ L + GK ++L IWDTAGQ
Sbjct: 34 SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYM-VNLQVKGKPVHLHIWDTAGQ 92
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAGNKIDLE 133
+ + L P++Y ++ +L +D+T +SF+ + N W E+ + + + G K DL
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLR 151
Query: 134 KQRT------------VMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
K ++ V ++ A+SVGAV + SA+++ + +F E ++ L
Sbjct: 152 KDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 92/170 (54%), Gaps = 16/170 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
K V++G+G VGKT +++ Y D F E+++ T+ + + + GK+ L ++DTAGQE
Sbjct: 19 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQE 77
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLE- 133
+ L P+ Y M++ ++ + + + SF+ VK WV ELK+ N + + G +IDL
Sbjct: 78 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN-VPFLLIGTQIDLRD 136
Query: 134 -----------KQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIEEMFLE 171
K++ + E +K A+ +GA + SA +G++ +F E
Sbjct: 137 DPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
FK+VL+G+G GKT+ V R++ +F +K++ TL + + +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
E++ L YY + A++++D+T +++ V NW ++L ++ N I + + GNK+D++
Sbjct: 70 EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKD 128
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
++ ++ + + + ++ SAK N E+ FL L+++++
Sbjct: 129 RK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 93/173 (53%), Gaps = 17/173 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+G GKT +++ + +D+F E ++ T+ +++ + + GK++ LA+WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQED 85
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLE-- 133
+ L P+ Y ++ ++ + I DS E + + W E+K N + + + GNK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRQD 144
Query: 134 ----------KQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQR 175
KQ V E+ A + A + SAK G+ E+F E++ R
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATR 196
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 17/173 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+G GKT +++ +D+F E ++ T+ +++ + + GK++ LA+WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 63
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLE-- 133
+ L P+ Y ++ ++ + I DS E + + W E+K N + + + GNK DL
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 122
Query: 134 ----------KQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQR 175
KQ V E+ A +GA + SAK G+ E+F E++ R
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 174
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 93/173 (53%), Gaps = 17/173 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+G GKT +++ + +D+F E ++ T+ +++ + + GK++ LA+WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQED 85
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLE-- 133
+ L P+ Y ++ ++ + I DS E + + W E+K N + + + GNK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPN-VPIILVGNKKDLRQD 144
Query: 134 ----------KQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQR 175
KQ V E+ A + A + SAK G+ E+F E++ R
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATR 196
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 17/173 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+G GKT +++ +D+F E ++ T+ +++ + + GK++ LA+WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 65
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLE-- 133
+ L P+ Y ++ ++ + I DS E + + W E+K N + + + GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
Query: 134 ----------KQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQR 175
KQ V E+ A +GA + SAK G+ E+F E++ R
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 176
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 96/179 (53%), Gaps = 17/179 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+G GKT +++ +D+F E ++ T+ +++ + + GK++ LA+WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 65
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLE-- 133
+ L P+ Y ++ ++ + I DS E + + W E+K N + + + GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
Query: 134 ----------KQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
KQ V E+ A +GA + SAK G+ E+F E++ R +A+
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQAR 182
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 17/173 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+G GKT +++ +D+F E ++ T+ +++ + + GK++ LA+WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 63
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLE-- 133
+ L P+ Y ++ ++ + I DS E + + W E+K N + + + GNK DL
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 122
Query: 134 ----------KQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQR 175
KQ V E+ A +GA + SAK G+ E+F E++ R
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 174
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 96/179 (53%), Gaps = 17/179 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+G GKT +++ +D+F E ++ T+ +++ + + GK++ LA+WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 65
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLE-- 133
+ L P+ Y ++ ++ + I DS E + + W E+K N + + + GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
Query: 134 ----------KQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
KQ V E+ A +GA + SAK G+ E+F E++ R +A+
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQAR 182
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 104/182 (57%), Gaps = 2/182 (1%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
MA + + +S KV+++G G VGK+++ L+++ D+F E + T S+ KK+ + G
Sbjct: 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDG 59
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND- 120
+ + + I DTAGQE + A+ Y+R G + V+ IT+ +SF ++ +++ ++ ++
Sbjct: 60 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 119
Query: 121 ICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180
+ + GNK DLE +R V E+A+ A+ + TSAK ++++F +L + + +
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179
Query: 181 QE 182
E
Sbjct: 180 ME 181
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 98/163 (60%), Gaps = 3/163 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V+LG G VGK+++ +++V+ F EK+ T++ S+ K++ + ++ L I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 62
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEK 134
+F A+ +Y + G LVY IT + +F +++ +++ ++ +D+ + + GNK DLE
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 135 QRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRM 176
+R V +E + A+ F +SAK + E+F +L +++
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 100/168 (59%), Gaps = 4/168 (2%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V++G VGK+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN-DICLTIAGNKIDLEK 134
+ A+ Y R G + V+ I + SFE + ++ +++K++ + D+ + + GNK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-P 122
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
RTV + A+ A+S G TSAK +G+++ F L R + K +E
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV-REIRKHKE 169
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 87/159 (54%), Gaps = 3/159 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++V + G G VGK+S+VLR+V+ F E +I T++ ++ + ++ L I DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 62
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN--DICLTIAGNKIDLE 133
+F A+ + + +LVY IT S E++K +++ ++ G+ I + + GNK D
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172
R V +AE A++ TSAK+N ++E+F EL
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
FK+VL+G+G GKT+ V R++ +F +K++ TL + + +WDTAG
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
E+F L YY + A++++D+T +++ V NW ++L ++ N I + + GNK+D++
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKD 128
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
++ ++ + + + ++ SAK N E+ FL L+++++
Sbjct: 129 RK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V+LG G VGK+++ +++V+ F EK+ T++ S+ K++ + ++ L I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN-DICLTIAGNKIDLEK 134
+F A+ +Y + G LVY IT + +F +++ +++ ++ D+ + + GNK DLE
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 135 QRTVMQEDAEKYA-QSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
+R V +E + A Q +SAK + E+F +L +++
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 95/173 (54%), Gaps = 3/173 (1%)
Query: 5 SLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRL 64
S+ FK+VL+G+G GKT+ V R++ +F +K++ TL + +
Sbjct: 2 SMAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI 61
Query: 65 NLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLT 124
+WDTAG E+F L YY + A++++D+T +++ V NW ++L ++ N I +
Sbjct: 62 KFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIV 120
Query: 125 IAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
+ GNK+D++ ++ ++ + + + ++ SAK N E+ FL L+++++
Sbjct: 121 LCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 171
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 95/158 (60%), Gaps = 3/158 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V++G VGK+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN-DICLTIAGNKIDLEK 134
+ A+ Y R G + V+ I + SFE + ++ +++K++ + D+ + + GNK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-P 122
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172
RTV + A+ A+S G TSAK +G+++ F L
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 93/167 (55%), Gaps = 3/167 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+FK+VL+G+G GKT+ V R++ +F +K+I T+ + +WDTAG
Sbjct: 12 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 71
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
E+F L YY + A++++D+T +++ V NW ++L ++ N I + + GNK+D+++
Sbjct: 72 EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDVKE 130
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
++ ++ + + ++ SAK N E+ FL L++++ Q
Sbjct: 131 RK--VKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 175
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+G GKT +++ + +D+F E ++ T+ +++ + + GK++ LA+WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 85
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLE-- 133
+ L P+ Y ++ ++ + + DS E + + WV E+K N + + + NK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN-VPIILVANKKDLRSD 144
Query: 134 ----------KQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQRMLEK 179
KQ V +D A + A + SAK G+ E+F ++ L+K
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 93/173 (53%), Gaps = 17/173 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+ GKT +++ + +D+F E ++ T+ +++ + + GK++ LA+WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 66
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLE-- 133
+ L P+ Y ++ ++ + I DS E + + W E+K N + + + GNK DL
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 125
Query: 134 ----------KQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQR 175
KQ V E+ A +GA + SAK G+ E+F E++ R
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 177
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 98/167 (58%), Gaps = 2/167 (1%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
KV+++G G VGK+++ L+++ D+F E + T S+ KK+ + G+ + + I DTAGQE
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQED 78
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEKQ 135
+ A+ Y+R G + V+ IT+ +SF ++ +++ ++ ++ + + GNK DLE +
Sbjct: 79 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
R V E+A+ A+ + TSAK ++++F +L + + + E
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 185
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 98/167 (58%), Gaps = 2/167 (1%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
KV+++G G VGK+++ L+++ D+F E + T S+ KK+ + G+ + + I DTAGQE
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQED 66
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEKQ 135
+ A+ Y+R G + V+ IT+ +SF ++ +++ ++ ++ + + GNK DLE +
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
R V E+A+ A+ + TSAK ++++F +L + + + E
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 173
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 100/191 (52%), Gaps = 16/191 (8%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTAG 73
K V +G+G VGKT +++ Y +KF +I T+ F N N+A G+ +NL +WDTAG
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV---FDNFSANVAVDGQIVNLGLWDTAG 66
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDL 132
QE + L P+ YR ++ VL + + + S+E V K W+ EL++ N + + + G K+DL
Sbjct: 67 QEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPN-VPIVLVGTKLDL 125
Query: 133 EKQR--------TVMQEDAEKYAQSVG-AVHFHTSAKMNRGIEEMFLELSQRMLEKAQEF 183
+ + E+ + +G A + S+K + ++ +F + +L+ +
Sbjct: 126 RDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 185
Query: 184 DLAKASELSRR 194
++ + + RR
Sbjct: 186 EVPRRRKNHRR 196
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
FK+VL+G+G GKT+ V R++ +F +K++ TL + + +WDTAG
Sbjct: 6 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
E+F L YY + A++++D+T +++ V NW ++L ++ N I + + GNK+D++
Sbjct: 66 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKD 124
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
++ ++ + + + ++ SAK N E+ FL L+++++
Sbjct: 125 RK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 165
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 93/167 (55%), Gaps = 3/167 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+FK+VL+G+G GKT+ V R++ +F +K+I T+ + +WDTAG
Sbjct: 4 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 63
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
E+F L YY + A++++D+T +++ V NW ++L ++ N I + + GNK+D+++
Sbjct: 64 EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDVKE 122
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
++ ++ + + ++ SAK N E+ FL L++++ Q
Sbjct: 123 RK--VKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 167
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 93/167 (55%), Gaps = 3/167 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+FK+VL+G+G GKT+ V R++ +F +K+I T+ + +WDTAG
Sbjct: 5 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 64
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
E+F L YY + A++++D+T +++ V NW ++L ++ N I + + GNK+D+++
Sbjct: 65 EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDVKE 123
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
++ ++ + + ++ SAK N E+ FL L++++ Q
Sbjct: 124 RK--VKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 168
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 92/173 (53%), Gaps = 17/173 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+G GKT +++ +D+F E ++ T+ +++ + + GK++ LA+WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQED 65
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLE-- 133
+ L P+ Y ++ ++ + I DS E + + W E+K N + + + GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRQD 124
Query: 134 ----------KQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQR 175
KQ V E+ A + A + SAK G+ E+F E++ R
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATR 176
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 93/162 (57%), Gaps = 3/162 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VL+G+G GKT+ V R++ + +K++ TL + + +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
+F L YY + A++++D+T +++ V NW ++L ++ N I + + GNK+D++ +
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKDR 134
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
+ ++ + + + ++ SAK N E+ FL L+++++
Sbjct: 135 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 174
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 97/173 (56%), Gaps = 6/173 (3%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
S K+ +LG VGK+S+ +++VE +F + + T++ +F K + + G+ +L + DTAGQ
Sbjct: 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQ 64
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN-DICLTIAGNKIDLE 133
+ + Y NG +LVY +T SFE +K +L M+G I + + GNK DL
Sbjct: 65 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLA 186
+R + E+ + A+S A +SAK N+ ++F +R++ +A++ D A
Sbjct: 125 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVF----RRIILEAEKMDGA 173
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 97/173 (56%), Gaps = 6/173 (3%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
S K+ +LG VGK+S+ +++VE +F + + T++ +F K + + G+ +L + DTAGQ
Sbjct: 1 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQ 59
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN-DICLTIAGNKIDLE 133
+ + Y NG +LVY +T SFE +K +L M+G I + + GNK DL
Sbjct: 60 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 119
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLA 186
+R + E+ + A+S A +SAK N+ ++F +R++ +A++ D A
Sbjct: 120 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVF----RRIILEAEKIDGA 168
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 93/157 (59%), Gaps = 2/157 (1%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
KV+++G G VGK+++ L+++ D+F E + T S+ KK+ + G+ + + I DTAGQE
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQED 64
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEKQ 135
+ A+ Y+R G + V+ IT+ +SF ++ +++ ++ ++ + + GNK DLE +
Sbjct: 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172
R V E+A+ A + TSAK ++++F +L
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 20/182 (10%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIW 69
S + K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +W
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLW 58
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGN 128
DTAGQE + L P+ Y ++ +++ + + SFE V+ W E++ N + + G
Sbjct: 59 DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGT 117
Query: 129 KIDLEKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQR 175
K+DL + +++ EK A+ +GAV + SA RG++ +F E +
Sbjct: 118 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 177
Query: 176 ML 177
+L
Sbjct: 178 VL 179
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 90/167 (53%), Gaps = 16/167 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+G GKT +++ + +F E ++ T+ +++ + + G+R+ LA+WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYV-ADVEVDGRRVELALWDTAGQED 70
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDL--- 132
+ L P+ Y SN ++ + I DS E V+ W+ E+ + + + G K+DL
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFC-QGVPIILVGCKVDLRND 129
Query: 133 ---------EKQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMF 169
E Q+ V ++ + A +GA ++ SAK G+ E+F
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
KVV+LG CVGKTS+ ++VE +F+E + T++ ++ +K + + +L + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEKQ 135
+ L + +G VLVY +T SF+ +++ ++L + G + + + GNK DL +
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R V + +K A+S GA +SA+ N+ + +F ++ Q +
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 92/173 (53%), Gaps = 17/173 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+G GKT +++ +D+F E ++ T+ +++ + + GK++ LA+WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGLED 68
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLE-- 133
+ L P+ Y ++ ++ + I DS E + + W E+K N + + + GNK DL
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 127
Query: 134 ----------KQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQR 175
KQ V E+ A +GA + SAK G+ E+F E++ R
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 179
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 20/179 (11%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +WDTA
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTA 59
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ +++ + + SFE V+ W E++ N + + G K+D
Sbjct: 60 GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLD 118
Query: 132 LEKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
L + +++ EK A+ +GAV + SA RG++ +F E + +L
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 98/167 (58%), Gaps = 3/167 (1%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDT 71
S +K+V+LG VGK+++ +++V+ F EK+ T++ S+ K++ + ++ L I DT
Sbjct: 2 SMREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDT 60
Query: 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKI 130
AG E+F A+ +Y + G LVY IT + +F +++ +++ ++ +D+ + + GNK
Sbjct: 61 AGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKC 120
Query: 131 DLEKQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRM 176
DLE +R V +E + A+ F +SAK + E+F +L +++
Sbjct: 121 DLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 20/179 (11%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +WDTA
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTA 59
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ +++ + + SFE V+ W E++ N + + G K+D
Sbjct: 60 GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLD 118
Query: 132 LEKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
L + +++ EK A+ +GAV + SA RG++ +F E + +L
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 20/179 (11%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +WDTA
Sbjct: 7 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTA 63
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ +++ + + SFE V+ W E++ N + + G K+D
Sbjct: 64 GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLD 122
Query: 132 LEKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
L + +++ EK A+ +GAV + SA RG++ +F E + +L
Sbjct: 123 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 181
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V+LG G VGK+++ +++V+ F +++ T++ S+ K++ + ++ L I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN-DICLTIAGNKIDLEK 134
+F A+ +Y + G LVY IT + +F +++ +++ ++ D+ + + GNK DLE
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 135 QRTVMQEDAEKYA-QSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
+R V +E + A Q +SAK + E+F +L +++
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 93/165 (56%), Gaps = 10/165 (6%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE- 75
K+ + G VGK+++V+R++ +F ++ TL++++ ++ I + +++ I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDTAGQED 88
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKV---KNWVKELKKMLGNDICLTIAGNKIDL 132
G + R G VLVYDITD SFE+V KN + E+KK ++ L + GNK DL
Sbjct: 89 TIQREG--HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK--PKNVTLILVGNKADL 144
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG-IEEMFLELSQRM 176
+ R V E+ EK A + + SA G I E+F EL + +
Sbjct: 145 DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 96/171 (56%), Gaps = 6/171 (3%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
S K+ +LG VGK+S+ +++VE +F + + T++ +F K + + G+ +L + DTAGQ
Sbjct: 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQ 64
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN-DICLTIAGNKIDLE 133
+ + Y NG +LVY +T SFE +K +L M+G I + + GNK DL
Sbjct: 65 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFD 184
+R + E+ + A+S A +SAK N+ ++F +R++ +A++ +
Sbjct: 125 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVF----RRIILEAEKLE 171
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 94/188 (50%), Gaps = 20/188 (10%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLN--IAGKRLNLAI 68
S+ + K V++G+G VGKT +++ Y +KF +++ T+ F N + I G+ L +
Sbjct: 6 SAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLGL 62
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAG 127
+DTAGQE + L P+ Y ++ ++ + + SFE VK WV E+ L + G
Sbjct: 63 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVG 121
Query: 128 NKIDLE------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQ 174
+IDL KQ+ + E AEK A+ + AV + SA +G++ +F E
Sbjct: 122 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 181
Query: 175 RMLEKAQE 182
LE +
Sbjct: 182 AALEPPEP 189
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 97/167 (58%), Gaps = 2/167 (1%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
KV+++G G VGK+++ L+++ D+F E + T S+ KK+ + G+ + + I DTAG E
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGLED 66
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEKQ 135
+ A+ Y+R G + V+ IT+ +SF ++ +++ ++ ++ + + GNK DLE +
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
R V E+A+ A+ + TSAK ++++F +L + + + E
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 173
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 16/182 (8%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+ K V++G+G VGKT +++ Y +KF +++ T+ ++ + I G+ L ++DTAGQ
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVXIGGEPYTLGLFDTAGQ 61
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLE 133
E + L P+ Y ++ ++ + + SFE VK WV E+ L + G +IDL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQIDLR 120
Query: 134 ------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRMLEKA 180
KQ+ + E AEK A+ + AV + SA +G++ +F E LE
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 180
Query: 181 QE 182
+
Sbjct: 181 EP 182
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 20/187 (10%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLN--IAGKRLNLAIW 69
S + K V++G+G VGKT +++ Y +KF +++ T+ F N + I G+ L ++
Sbjct: 1 SMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLGLF 57
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGN 128
DTAGQE + L P+ Y ++ ++ + + SFE VK WV E+ L + G
Sbjct: 58 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGT 116
Query: 129 KIDLE------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQR 175
+IDL KQ+ + E AEK A+ + AV + SA +G++ +F E
Sbjct: 117 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILA 176
Query: 176 MLEKAQE 182
LE +
Sbjct: 177 ALEPPEP 183
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 4/166 (2%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGK-RLNLAIWDTAGQ 74
K+V+LG+G GKTS+ + ++ F +++ T+ F +++ + G + L IWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNW---VKELKKMLGNDICLTIAGNKID 131
+ Y + G +LVYDIT+ SFE +++W VK++ + + + GNKID
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
LE RT+ E ++ Q G SAK + F +++ +L
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL 172
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 89/156 (57%), Gaps = 3/156 (1%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ +++++ F + T++ S+ K+ I + L I DTAGQE F A+ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSY-TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEKQRTVMQEDAEKY 146
G +LV+ +TD SFE++ + +++ ++ D + + GNK DL+ QR V QE+ ++
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
A+ + + SAK+ +++ F EL R++ K QE
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELV-RVIRKFQE 171
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 16/178 (8%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+ K V++G+G VGKT +++ Y +KF +++ T+ ++ + I G+ L ++DTAGQ
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLE 133
E + L P+ Y ++ ++ + + SFE VK WV E+ L + G +IDL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQIDLR 120
Query: 134 ------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRMLE 178
KQ+ + E AEK A+ + AV + SA RG++ +F E LE
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALE 178
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 93/179 (51%), Gaps = 20/179 (11%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +WDTA
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTA 59
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ ++ + + SFE V+ W E++ N + + G K+D
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLD 118
Query: 132 LEKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
L + +++ EK A+ +GAV + SA RG++ +F E + +L
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 20/184 (10%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLN--IAGKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y +KF +++ T+ F N + I G+ L ++DTA
Sbjct: 13 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLGLFDTA 69
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ ++ + + SFE VK WV E+ L + G +ID
Sbjct: 70 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQID 128
Query: 132 LE------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRMLE 178
L KQ+ + E AEK A+ + AV + SA +G++ +F E LE
Sbjct: 129 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 188
Query: 179 KAQE 182
+
Sbjct: 189 PPEP 192
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 20/184 (10%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLN--IAGKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y +KF +++ T+ F N + I G+ L ++DTA
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLGLFDTA 59
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ ++ + + SFE VK WV E+ L + G +ID
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQID 118
Query: 132 LE------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRMLE 178
L KQ+ + E AEK A+ + AV + SA +G++ +F E LE
Sbjct: 119 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
Query: 179 KAQE 182
+
Sbjct: 179 PPEP 182
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 20/184 (10%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLN--IAGKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y +KF +++ T+ F N + I G+ L ++DTA
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLGLFDTA 59
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ ++ + + SFE VK WV E+ L + G +ID
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQID 118
Query: 132 LE------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRMLE 178
L KQ+ + E AEK A+ + AV + SA +G++ +F E LE
Sbjct: 119 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
Query: 179 KAQE 182
+
Sbjct: 179 PPEP 182
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 16/182 (8%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+ K V++G+G VGKT +++ Y +KF +++ T+ ++ + I G+ L ++DTAGQ
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLE 133
E + L P+ Y ++ ++ + + SFE VK WV E+ L + G +IDL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQIDLR 120
Query: 134 ------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRMLEKA 180
KQ+ + E AEK A+ + AV + SA +G++ +F E LE
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 180
Query: 181 QE 182
+
Sbjct: 181 EP 182
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 20/184 (10%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLN--IAGKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y +KF +++ T+ F N + I G+ L ++DTA
Sbjct: 5 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLGLFDTA 61
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ ++ + + SFE VK WV E+ L + G +ID
Sbjct: 62 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQID 120
Query: 132 LE------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRMLE 178
L KQ+ + E AEK A+ + AV + SA +G++ +F E LE
Sbjct: 121 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 180
Query: 179 KAQE 182
+
Sbjct: 181 PPEP 184
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 20/184 (10%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLN--IAGKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y +KF +++ T+ F N + I G+ L ++DTA
Sbjct: 6 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLGLFDTA 62
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ ++ + + SFE VK WV E+ L + G +ID
Sbjct: 63 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQID 121
Query: 132 LE------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRMLE 178
L KQ+ + E AEK A+ + AV + SA +G++ +F E LE
Sbjct: 122 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 181
Query: 179 KAQE 182
+
Sbjct: 182 PPEP 185
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 93/179 (51%), Gaps = 20/179 (11%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +WDTA
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTA 59
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ ++ + + SFE V+ W E++ N + + G K+D
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLD 118
Query: 132 LEKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
L + +++ EK A+ +GAV + SA RG++ +F E + +L
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 20/184 (10%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLN--IAGKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y +KF +++ T+ F N + I G+ L ++DTA
Sbjct: 6 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLGLFDTA 62
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ ++ + + SFE VK WV E+ L + G +ID
Sbjct: 63 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQID 121
Query: 132 LE------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRMLE 178
L KQ+ + E AEK A+ + AV + SA +G++ +F E LE
Sbjct: 122 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 181
Query: 179 KAQE 182
+
Sbjct: 182 PPEP 185
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 16/171 (9%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+ K V++G+G VGKT +++ Y +KF +++ T+ ++ + I G+ L ++DTAGQ
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLE 133
E + L P+ Y ++ ++ + + SFE VK WV E+ L + G +IDL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQIDLR 120
Query: 134 ------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLE 171
KQ+ + E AEK A+ + AV + SA RG++ +F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 93/179 (51%), Gaps = 20/179 (11%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +WDTA
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTA 59
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ ++ + + SFE V+ W E++ N + + G K+D
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLD 118
Query: 132 LEKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
L + +++ EK A+ +GAV + SA RG++ +F E + +L
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 93/189 (49%), Gaps = 20/189 (10%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLN--IAGKRLNLA 67
SS + K V++G+G VGK +++ Y +KF +++ T+ F N + I G+ L
Sbjct: 5 SSGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLG 61
Query: 68 IWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIA 126
++DTAGQE + L P+ Y ++ ++ + + SFE VK WV E+ L +
Sbjct: 62 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LV 120
Query: 127 GNKIDLE------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELS 173
G +IDL KQ+ + E AEK A+ + AV + SA +G++ +F E
Sbjct: 121 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
Query: 174 QRMLEKAQE 182
LE +
Sbjct: 181 LAALEPPEP 189
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 94/180 (52%), Gaps = 20/180 (11%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +WDTA
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTA 59
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ ++ + + SFE V+ W E++ N + + G K+D
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLD 118
Query: 132 LEKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQRMLE 178
L + +++ EK A+ +GAV + SA RG++ +F E + +L+
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 103/185 (55%), Gaps = 5/185 (2%)
Query: 5 SLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRL 64
S+D S T+ K+V++G G VGK+++ +++++ F + T++ S+ K ++ G
Sbjct: 1 SMDPPPSETH--KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPA 57
Query: 65 NLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICL 123
L I DTAGQE F A+ Y R +G +LV+ I D SF +V K + + L+ +D +
Sbjct: 58 RLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPV 117
Query: 124 TIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEF 183
+ GNK DLE QR V + +A + S +F SAK+ ++E F +L R + K QE
Sbjct: 118 VLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV-RAVRKYQEQ 176
Query: 184 DLAKA 188
+L +
Sbjct: 177 ELPPS 181
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 20/179 (11%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y + F+ ++I T+ F N N+ GK +NL +WDTA
Sbjct: 13 AIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV---FDNYSANVMVDGKPVNLGLWDTA 69
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ ++ + + SFE V+ W E++ N + + G K+D
Sbjct: 70 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLD 128
Query: 132 LEKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
L + +++ EK A+ +GAV + SA RG++ +F E + +L
Sbjct: 129 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 187
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F EK+ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 93/179 (51%), Gaps = 20/179 (11%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +WDTA
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTA 59
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ ++ + + SFE V+ W E++ N + + G K+D
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLD 118
Query: 132 LEKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
L + +++ EK A+ +GAV + SA RG++ +F E + +L
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 93/179 (51%), Gaps = 20/179 (11%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +WDTA
Sbjct: 22 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTA 78
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ ++ + + SFE V+ W E++ N + + G K+D
Sbjct: 79 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLD 137
Query: 132 LEKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
L + +++ EK A+ +GAV + SA RG++ +F E + +L
Sbjct: 138 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 196
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 94/184 (51%), Gaps = 20/184 (10%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLA 67
SS + K V++G+G VGK +++ Y + F ++I T+ F N N+ GK +NL
Sbjct: 5 SSGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLG 61
Query: 68 IWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIA 126
+WDTAGQE + L P+ Y ++ ++ + + SFE V+ W E++ N + +
Sbjct: 62 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILV 120
Query: 127 GNKIDLEKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELS 173
G K+DL + +++ EK A+ +GAV + SA RG++ +F E
Sbjct: 121 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 180
Query: 174 QRML 177
+ +L
Sbjct: 181 RAVL 184
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 20/173 (11%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +WDTA
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTA 59
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ ++ + + SFE V+ W E++ N + + G K+D
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLD 118
Query: 132 LEKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLE 171
L + +++ EK A+ +GAV + SA RG++ +F E
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
S K+ +LG VGK+S+ +++VE +F + T++ +F K + + G+ +L + DTAGQ
Sbjct: 4 SRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQ 62
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN-DICLTIAGNKIDLE 133
+ + Y NG +LVY +T SFE +K +L M+G I + + GNK DL
Sbjct: 63 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
+R + E+ + A+S A +SAK N+ ++F
Sbjct: 123 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 158
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 93/179 (51%), Gaps = 20/179 (11%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +WDTA
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTA 86
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ ++ + + SFE V+ W E++ N + + G K+D
Sbjct: 87 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLD 145
Query: 132 LEKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
L + +++ EK A+ +GAV + SA RG++ +F E + +L
Sbjct: 146 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 91/179 (50%), Gaps = 16/179 (8%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+ K V++G+G VGKT +++ Y +KF +++ T+ ++ + I G+ L ++DTAGQ
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLE 133
E + L P+ Y ++ ++ + + SFE VK WV E+ L + G +IDL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQIDLR 120
Query: 134 ------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRMLEK 179
KQ+ + E AEK A+ + AV + SA +G++ +F E LE
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP 179
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 16/181 (8%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDT 71
S + K V++G+G VGKT +++ Y +KF +++ T+ ++ + I G+ L ++DT
Sbjct: 2 SMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDT 60
Query: 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKI 130
AGQE + L P+ Y ++ ++ + + SFE VK WV E+ L + G +I
Sbjct: 61 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQI 119
Query: 131 DLE------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRML 177
DL KQ+ + E AEK A+ + AV + SA +G++ +F E L
Sbjct: 120 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179
Query: 178 E 178
E
Sbjct: 180 E 180
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 16/178 (8%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+ K V++G+G VGKT +++ Y +KF +++ T+ ++ + I G+ L ++DTAGQ
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLE 133
E + L P+ Y ++ ++ + + SFE VK WV E+ L + G +IDL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQIDLR 120
Query: 134 ------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRMLE 178
KQ+ + E AEK A+ + AV + SA +G++ +F E LE
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 16/178 (8%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+ K V++G+G VGKT +++ Y +KF +++ T+ ++ + I G+ L ++DTAGQ
Sbjct: 7 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 65
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLE 133
E + L P+ Y ++ ++ + + SFE VK WV E+ L + G +IDL
Sbjct: 66 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQIDLR 124
Query: 134 ------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRMLE 178
KQ+ + E AEK A+ + AV + SA +G++ +F E LE
Sbjct: 125 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 182
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +K+ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 90/162 (55%), Gaps = 7/162 (4%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFL----ELSQRMLEKAQEFD 184
A+S G + TSAK +G+E+ F E+ Q L K D
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPD 175
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 20/180 (11%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLN--IAGKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y +KF +++ A F N + I G+ L ++DTA
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYV---PAVFDNYAVTVMIGGEPYTLGLFDTA 59
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ ++ + + SFE VK WV E+ L + G +ID
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQID 118
Query: 132 LE------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRMLE 178
L KQ+ + E AEK A+ + AV + SA +G++ +F E LE
Sbjct: 119 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 20/179 (11%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +WDTA
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTA 59
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
G E + L P+ Y ++ ++ + + SFE V+ W E++ N + + G K+D
Sbjct: 60 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLD 118
Query: 132 LEKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
L + +++ EK A+ +GAV + SA RG++ +F E + +L
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 140
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTL 166
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 93/177 (52%), Gaps = 16/177 (9%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+ K V++G+G VGKT +++ Y + F ++I T+ ++ + + + GK +NL +WDTAG
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGL 61
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLE 133
E + L P+ Y ++ ++ + + SFE V+ W E++ N + + G K+DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLR 120
Query: 134 KQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
+ +++ EK A+ +GAV + SA RG++ +F E + +L
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 90/173 (52%), Gaps = 17/173 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+ GKT +++ + +D+F ++ T+ +++ + + GK++ LA+WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 65
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLE-- 133
+ P+ Y ++ ++ + I DS E + + W E+K N + + + GNK DL
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
Query: 134 ----------KQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQR 175
KQ V + A +GA + SAK G+ E+F E++ R
Sbjct: 125 EHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 176
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 16/182 (8%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+ K V++G+G VGKT +++ Y +KF +++ T+ ++ + I G+ L ++DTAG
Sbjct: 7 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGL 65
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLE 133
E + L P+ Y ++ ++ + + SFE VK WV E+ L + G +IDL
Sbjct: 66 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQIDLR 124
Query: 134 ------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRMLEKA 180
KQ+ + E AEK A+ + AV + SA +G++ +F E LE
Sbjct: 125 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 184
Query: 181 QE 182
+
Sbjct: 185 EP 186
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTL 164
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTL 164
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 16/178 (8%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+ K V++G+G VGKT +++ Y +KF +++ T+ ++ + I G+ L + DTAGQ
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLRDTAGQ 61
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLE 133
E + L P+ Y ++ ++ + + SFE VK WV E+ L + G +IDL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQIDLR 120
Query: 134 ------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRMLE 178
KQ+ + E AEK A+ + AV + SA +G++ +F E LE
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 81/148 (54%), Gaps = 10/148 (6%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
S++ K V +G+G VGKT +++ Y + F ++ T+ +F + + + G +NL +WD
Sbjct: 4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWD 62
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNK 129
TAGQE ++ L P+ YR ++ +L + + + S+E V K W+ ELK + + + G K
Sbjct: 63 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY-APGVPIVLVGTK 121
Query: 130 IDLEKQRTVMQEDAEKYAQSVGAVHFHT 157
+DL ++D + + GAV T
Sbjct: 122 LDL-------RDDKQFFIDHPGAVPITT 142
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 91/171 (53%), Gaps = 14/171 (8%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
S+ K V +G+G VGKT +++ Y + F ++ T+ +F + + + G +NL +WD
Sbjct: 2 STARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWD 60
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNK 129
TAGQE ++ L P+ YR ++ +L + + + S+E + K W+ ELK I + + G K
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHY-APGIPIVLVGTK 119
Query: 130 IDLEKQRTVMQE----------DAEKYAQSVGAVHF-HTSAKMNRGIEEMF 169
+DL + +++ E+ + +GAV + S+K + ++ +F
Sbjct: 120 LDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 16/182 (8%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+ K V++G+G VGKT +++ Y +KF +++ T+ ++ + I G+ L ++DTAG
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGL 61
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLE 133
E + L P+ Y ++ ++ + + SFE VK WV E+ L + G +IDL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQIDLR 120
Query: 134 ------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRMLEKA 180
KQ+ + E AEK A+ + AV + SA +G++ +F E LE
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 180
Query: 181 QE 182
+
Sbjct: 181 EP 182
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 20/179 (11%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y + ++I T+ F N N+ GK +NL +WDTA
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTA 86
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ ++ + + SFE V+ W E++ N + + G K+D
Sbjct: 87 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLD 145
Query: 132 LEKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
L + +++ EK A+ +GAV + SA RG++ +F E + +L
Sbjct: 146 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 20/179 (11%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +WDTA
Sbjct: 6 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTA 62
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
G E + L P+ Y ++ ++ + + SFE V+ W E++ N + + G K+D
Sbjct: 63 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLD 121
Query: 132 LEKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
L + +++ EK A+ +GAV + SA RG++ +F E + +L
Sbjct: 122 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 16/182 (8%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+ K V++G+ VGKT +++ Y +KF +++ T+ ++ + I G+ L ++DTAGQ
Sbjct: 3 TIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLE 133
E + L P+ Y ++ ++ + + SFE VK WV E+ L + G +IDL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQIDLR 120
Query: 134 ------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRMLEKA 180
KQ+ + E AEK A+ + AV + SA +G++ +F E LE
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 180
Query: 181 QE 182
+
Sbjct: 181 EP 182
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 96/185 (51%), Gaps = 22/185 (11%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
S++ K V +G+G VGKT +++ Y + F ++ T+ +F + + + G +NL +WD
Sbjct: 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWD 60
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNK 129
TAGQE ++ L P+ YR ++ +L + + + S+E V K W+ EL+ + + + G K
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTK 119
Query: 130 IDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIE-------EMFLELSQRMLEKAQE 182
+DL ++D + + GAV T N+G E +++E S + + +
Sbjct: 120 LDL-------RDDKQFFIDHPGAVPITT----NQGEELKKLIGSPIYIECSSKTQQNVKA 168
Query: 183 -FDLA 186
FD A
Sbjct: 169 VFDAA 173
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 16/178 (8%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+ K V++G+G VGKT +++ Y +K +++ T+ ++ + I G+ L ++DTAGQ
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLE 133
E + L P+ Y ++ ++ + + SFE VK WV E+ L + G +IDL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQIDLR 120
Query: 134 ------------KQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRMLE 178
KQ+ + E AEK A+ + AV + SA +G++ +F E LE
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 20/179 (11%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +WDTA
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTA 86
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
G E + L P+ Y ++ ++ + + SFE V+ W E++ N + + G K+D
Sbjct: 87 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLD 145
Query: 132 LEKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
L + +++ EK A+ +GAV + SA RG++ +F E + +L
Sbjct: 146 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GN+ DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAA-RTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K ++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ +++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 139
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTL 165
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 20/182 (10%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIW 69
S + K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +W
Sbjct: 1 SMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLW 57
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGN 128
DTAGQE + L P+ Y ++ ++ + + SFE V+ W E++ + L + G
Sbjct: 58 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPIL-LVGT 116
Query: 129 KIDLEKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQR 175
K+DL + ++ +K A+ +G+V + SA RG++ +F E +
Sbjct: 117 KLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRA 176
Query: 176 ML 177
+L
Sbjct: 177 VL 178
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ +++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F ++ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 20/182 (10%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIW 69
S + K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +W
Sbjct: 1 SMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLW 57
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGN 128
DTAGQE + L P+ Y ++ ++ + + SFE V+ W E++ + L + G
Sbjct: 58 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPIL-LVGT 116
Query: 129 KIDLEKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQR 175
K+DL + ++ +K A+ +G+V + SA RG++ +F E +
Sbjct: 117 KLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRA 176
Query: 176 ML 177
+L
Sbjct: 177 VL 178
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 92/179 (51%), Gaps = 20/179 (11%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +WDTA
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTA 59
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ ++ + + SFE V+ W E++ + L + G K+D
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPIL-LVGTKLD 118
Query: 132 LEKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
L + ++ +K A+ +G+V + SA RG++ +F E + +L
Sbjct: 119 LRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DT GQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DT GQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAG+E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F ++ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTA QE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA-RTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTA QE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA-RTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAG E + A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTL 164
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 20/178 (11%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTAG 73
K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +WDTAG
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 212
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDL 132
E + L P+ Y ++ ++ + + SF V+ W E++ N + + G K+DL
Sbjct: 213 LEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPN-TPIILVGTKLDL 271
Query: 133 EKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
+ +++ EK A+ +GAV + SA RG++ +F E + +L
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 20/178 (11%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTAG 73
K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +WDTAG
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 212
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDL 132
E + L P+ Y ++ ++ + + SF V+ W E++ N + + G K+DL
Sbjct: 213 LEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPN-TPIILVGTKLDL 271
Query: 133 EKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
+ +++ EK A+ +GAV + SA RG++ +F E + +L
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 20/178 (11%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTAG 73
K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +WDTAG
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 212
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDL 132
E + L P+ Y ++ ++ + + SF V+ W E++ N + + G K+DL
Sbjct: 213 LEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPN-TPIILVGTKLDL 271
Query: 133 EKQRTVMQEDAEK------------YAQSVGAV-HFHTSAKMNRGIEEMFLELSQRML 177
+ +++ EK A+ +GAV + SA RG++ +F E + +L
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + + +++K++ +D+ + + GNK DL RTV A+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G + TSAK +G+E+ F L
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 86/146 (58%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLGN-DICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + ++ +++K++ + D+ + + GNK DL RTV + A+
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQDL 134
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G TSAK +G+++ F L
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTL 160
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 86/146 (58%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLGN-DICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + ++ +++K++ + D+ + + GNK DL RTV + A+
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQDL 134
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G TSAK +G+++ F L
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTL 160
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 39/201 (19%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIW 69
S + K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +W
Sbjct: 2 SMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLW 58
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDIT-------------------DEDSFEKVK-NW 109
DTAGQE + L P+ Y + G DIT SFE V+ W
Sbjct: 59 DTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKW 118
Query: 110 VKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEK------------YAQSVGAV-HFH 156
E++ N + + G K+DL + +++ EK A+ +GAV +
Sbjct: 119 YPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 177
Query: 157 TSAKMNRGIEEMFLELSQRML 177
SA RG++ +F E + +L
Sbjct: 178 CSALTQRGLKTVFDEAIRAVL 198
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAG E + A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLGN-DICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SFE + ++ +++K++ + D+ + + GNK DL RTV + A+
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQDL 151
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G TSAK +G+++ F L
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTL 177
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 20/179 (11%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y + F ++I T+ F N N+ K +NL +WDTA
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDSKPVNLGLWDTA 59
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ ++ + + S+E V+ W E++ + + + G K+D
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTP-IILVGTKLD 118
Query: 132 LEKQRTVMQEDAEK------YAQSVGAV-------HFHTSAKMNRGIEEMFLELSQRML 177
L + +++ EK Y Q + + SA RG++ +F E + +L
Sbjct: 119 LRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
G + V+ I + SF + + +++K++ +D+ + + GNK DL RTV + A +
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHEL 151
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLEL 172
A+S G TSAK +G+E+ F L
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTL 177
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+S+VLR+V+ F + +I T++ ++ + ++ L I DT G +F A+ +
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLGN--DICLTIAGNKIDLEKQRTVMQEDAEK 145
+ +LV+ +T + S E++ K + ++ G+ DI + + GNK D E QR V +A+
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQA 138
Query: 146 YAQSVGAVHFHTSAKMNRGIEEMFLEL 172
AQ TSAKMN ++E+F EL
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELFQEL 165
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 20/185 (10%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNL 66
S + + K V++G+ VGKT +++ Y + F ++I T+ F N N+ K +NL
Sbjct: 3 GSGGSQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDSKPVNL 59
Query: 67 AIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTI 125
+WDTAGQE + L P+ Y ++ ++ + + S+E V+ W E++ + + +
Sbjct: 60 GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTP-IIL 118
Query: 126 AGNKIDLEKQRTVMQEDAEK------YAQSVGAV-------HFHTSAKMNRGIEEMFLEL 172
G K+DL + +++ EK Y Q + + SA RG++ +F E
Sbjct: 119 VGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEA 178
Query: 173 SQRML 177
+ +L
Sbjct: 179 IRAVL 183
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K VL+G+G VGKTS+V+ Y + + ++I T +F + +++ G+ + L + DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDE 80
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLE-- 133
F L P+ Y ++ +L + + SF+ V + WV E++ + + G + DL
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAP-IILVGTQSDLRED 139
Query: 134 ----------KQRTVMQEDAEKYAQSV-GAVHFHTSAKMNRGIEEMF 169
K++ V +E A+ A+ + A + SA + ++E+F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 20/185 (10%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNL 66
+ S + K V++G+ VGKT +++ Y + F ++I T+ F N N+ K +NL
Sbjct: 4 SGGSMQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDSKPVNL 60
Query: 67 AIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTI 125
+WDTAGQE + L P+ Y ++ ++ + + S+E V+ W E++ + + +
Sbjct: 61 GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTP-IIL 119
Query: 126 AGNKIDLEKQRTVMQEDAEK------YAQSVGAV-------HFHTSAKMNRGIEEMFLEL 172
G K+DL + +++ EK Y Q + + SA RG++ +F E
Sbjct: 120 VGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEA 179
Query: 173 SQRML 177
+ +L
Sbjct: 180 IRAVL 184
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 87/160 (54%), Gaps = 8/160 (5%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+ K+V++G+G VGKT ++L + + + ++ T+ +F + + + L +WDTAGQ
Sbjct: 23 ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQ 81
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTI-AGNKIDL 132
E + L P+ Y S+ +L + + + SF+ + W E+K + D T+ G K+DL
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI--DTAKTVLVGLKVDL 139
Query: 133 EKQRT--VMQEDAEKYAQSVGAVHFHTSAKMNR-GIEEMF 169
K + V +++ + Q +G V + ++ + + G+ E+F
Sbjct: 140 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 87/160 (54%), Gaps = 8/160 (5%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+ K+V++G+G VGKT ++L + + + ++ T+ +F + + + L +WDTAGQ
Sbjct: 22 ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQ 80
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTI-AGNKIDL 132
E + L P+ Y S+ +L + + + SF+ + W E+K + D T+ G K+DL
Sbjct: 81 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI--DTAKTVLVGLKVDL 138
Query: 133 EKQRT--VMQEDAEKYAQSVGAVHFHTSAKMNR-GIEEMF 169
K + V +++ + Q +G V + ++ + + G+ E+F
Sbjct: 139 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Query: 28 KTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87
K+++ +++V F EK+ T++ F K++ + L I DTAG E+F ++ +Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEKQRTVMQEDAEKY 146
G +LVY + ++ SF+ +K ++ ++ + + + + GNK+DLE +R V +
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
A+ G TSAK ++E+F E+ ++M
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 76/152 (50%), Gaps = 15/152 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+ GKT+++ + +D F E ++ T+ ++ I +R+ L++WDT+G
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 83
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDL--- 132
+ + P+ Y S+ ++ +DI+ ++ + V K W E+++ N L + G K DL
Sbjct: 84 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKML-LVGCKSDLRTD 142
Query: 133 ---------EKQRTVMQEDAEKYAQSVGAVHF 155
+Q V + A+ +GA +
Sbjct: 143 VSTLVELSNHRQTPVSYDQGANMAKQIGAATY 174
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 76/152 (50%), Gaps = 15/152 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+ GKT+++ + +D F E ++ T+ ++ I +R+ L++WDT+G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 88
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDL--- 132
+ + P+ Y S+ ++ +DI+ ++ + V K W E+++ N L + G K DL
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKML-LVGCKSDLRTD 147
Query: 133 ---------EKQRTVMQEDAEKYAQSVGAVHF 155
+Q V + A+ +GA +
Sbjct: 148 VSTLVELSNHRQTPVSYDQGANMAKQIGAATY 179
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 76/152 (50%), Gaps = 15/152 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+ GKT+++ + +D F E ++ T+ ++ I +R+ L++WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 67
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDL--- 132
+ + P+ Y S+ ++ +DI+ ++ + V K W E+++ N L + G K DL
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKML-LVGCKSDLRTD 126
Query: 133 ---------EKQRTVMQEDAEKYAQSVGAVHF 155
+Q V + A+ +GA +
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATY 158
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 84/147 (57%), Gaps = 2/147 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
++K+V++G+G VGK+++ +++ + F ++ T++ S+L K I + L + DTAGQ
Sbjct: 18 TYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQ 76
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLE 133
E F A+ Y R +G ++VY +TD+ SFE V + + + ++ + + + NK+DL
Sbjct: 77 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAK 160
R V ++ ++ A + TSAK
Sbjct: 137 HLRKVTRDQGKEMATKYNIPYIETSAK 163
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 84/147 (57%), Gaps = 2/147 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
++K+V++G+G VGK+++ +++ + F + + T++ S+L K I + L + DTAGQ
Sbjct: 18 TYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQ 76
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLE 133
E F A+ Y R +G ++VY +TD+ SFE V + + + ++ + + + NK+DL
Sbjct: 77 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAK 160
R V ++ ++ A + TSAK
Sbjct: 137 HLRKVTRDQGKEMATKYNIPYIETSAK 163
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
++K+V++G+G VGK+++ +++ + F + T++ S+L K I + L + DTAGQ
Sbjct: 13 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQ 71
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLE 133
E F A+ Y R +G ++VY +TD+ SFE V + + + ++ + + + NK+DL
Sbjct: 72 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 131
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAK 160
R V ++ ++ A + TSAK
Sbjct: 132 HLRKVTRDQGKEMATKYNIPYIETSAK 158
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 86/152 (56%), Gaps = 2/152 (1%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
S + ++K+V++G+G VGK+++ +++ + F +++ T++ S+ K I + L +
Sbjct: 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSY-RKHTEIDNQWAILDVL 71
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGN 128
DTAGQE F A+ Y R +G ++VY +TD+ SFE V + + + ++ + + + N
Sbjct: 72 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 131
Query: 129 KIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAK 160
K+DL R V ++ ++ A + TSAK
Sbjct: 132 KVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 84/182 (46%), Gaps = 17/182 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+VL+G+ GKT+++ +D + E ++ T+ ++ L +R+ L++WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 71
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEK-VKNWVKELKKMLGNDICLTIAGNKIDL--- 132
+ + P+ Y S+ +L +DI+ ++ + +K W E+ + L I G K DL
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI-GCKTDLRTD 130
Query: 133 ---------EKQRTVMQEDAEKYAQSVGA-VHFHTSA-KMNRGIEEMFLELSQRMLEKAQ 181
+KQ + E A+ +GA ++ SA + I +F S L K
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 190
Query: 182 EF 183
Sbjct: 191 PL 192
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 84/182 (46%), Gaps = 17/182 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+VL+G+ GKT+++ +D + E ++ T+ ++ L +R+ L++WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 70
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEK-VKNWVKELKKMLGNDICLTIAGNKIDL--- 132
+ + P+ Y S+ +L +DI+ ++ + +K W E+ + L I G K DL
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI-GCKTDLRTD 129
Query: 133 ---------EKQRTVMQEDAEKYAQSVGA-VHFHTSA-KMNRGIEEMFLELSQRMLEKAQ 181
+KQ + E A+ +GA ++ SA + I +F S L K
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 189
Query: 182 EF 183
Sbjct: 190 PL 191
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 84/182 (46%), Gaps = 17/182 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+VL+G+ GKT+++ +D + E ++ T+ ++ L +R+ L++WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 87
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEK-VKNWVKELKKMLGNDICLTIAGNKIDL--- 132
+ + P+ Y S+ +L +DI+ ++ + +K W E+ + L I G K DL
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI-GCKTDLRTD 146
Query: 133 ---------EKQRTVMQEDAEKYAQSVGA-VHFHTSA-KMNRGIEEMFLELSQRMLEKAQ 181
+KQ + E A+ +GA ++ SA + I +F S L K
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206
Query: 182 EF 183
Sbjct: 207 PL 208
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 12/161 (7%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLA---IW--- 69
FKV+L+GE VGK+++ + + + H +++ + + + L IW
Sbjct: 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKK-MLGNDICLTIAGN 128
D G R H L + + ++V+ +TD SF KV + L+ +D+ + + GN
Sbjct: 84 DAGGWLRDHCL-----QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN 138
Query: 129 KIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
K DL + R V E+ A ++ H TSA ++ E+F
Sbjct: 139 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 12/161 (7%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLA---IW--- 69
FKV+LLGE VGK+++ + + + H +++ + + + L IW
Sbjct: 13 FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 72
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKK-MLGNDICLTIAGN 128
D G + H L + + ++V+ +TD SF KV + L+ +D+ + + GN
Sbjct: 73 DAGGWLQDHCL-----QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN 127
Query: 129 KIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
K DL + R V E+ A ++ H TSA ++ E+F
Sbjct: 128 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 4/157 (2%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++VVLLG+ VGKTS+ + + + H L + L + G+ L + DT E
Sbjct: 5 YRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63
Query: 76 RFHALGPIYYRMSNGA--VLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDL 132
+ + G+ V+VY I D SFE +L++ D + + + GNK DL
Sbjct: 64 KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
+ R V E+ A TSA + + E+F
Sbjct: 124 ARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 12/161 (7%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLA---IW--- 69
FKV+L+GE VGK+++ + + + H +++ + + + L IW
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKK-MLGNDICLTIAGN 128
D G + H L + + ++V+ +TD SF KV + L+ +D+ + + GN
Sbjct: 63 DAGGWLQDHCL-----QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN 117
Query: 129 KIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
K DL + R V E+ A ++ H TSA ++ E+F
Sbjct: 118 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 7/157 (4%)
Query: 16 FKVVLLGEGCVGKTSV--VLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+KV+LLG VGK+++ + VED + ++ + + G+ +L ++D
Sbjct: 8 YKVLLLGAPGVGKSALARIFGGVEDGPEAE----AAGHTYDRSIVVDGEEASLMVYDIWE 63
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDL 132
Q+ L M + V+VY +TD+ SFEK +L++ +D+ + + GNK DL
Sbjct: 64 QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 123
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
+ R V ++ A TSA ++ ++ +F
Sbjct: 124 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 160
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 7/157 (4%)
Query: 16 FKVVLLGEGCVGKTSV--VLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+KV+LLG VGK+++ + VED + ++ + + G+ +L ++D
Sbjct: 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAE----AAGHTYDRSIVVDGEEASLMVYDIWE 58
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDL 132
Q+ L M + V+VY +TD+ SFEK +L++ +D+ + + GNK DL
Sbjct: 59 QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 118
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
+ R V ++ A TSA ++ ++ +F
Sbjct: 119 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 155
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 7/157 (4%)
Query: 16 FKVVLLGEGCVGKTSV--VLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+KV+LLG VGK+++ + VED + ++ + + G+ +L ++D
Sbjct: 8 YKVLLLGAPGVGKSALARIFGGVEDGPEAE----AAGHTYDRSIVVDGEEASLMVYDIWE 63
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDL 132
Q+ L M + V+VY +TD+ SFEK +L++ +D+ + + GNK DL
Sbjct: 64 QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 123
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
+ R V ++ A TSA ++ ++ +F
Sbjct: 124 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 160
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 9/175 (5%)
Query: 1 MMANSLDRNSSSTYSFKVVLLGEGCVGKTSV--VLRYVEDKFNEKHITTLQASFLNKKLN 58
M +S+ + S ++VVL+GE VGK+++ + V D + L + L
Sbjct: 23 MSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMD-SDCEVLGEDTYERTLM 81
Query: 59 IAGKRLN---LAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKK 115
+ G+ L +W+ G+ + L ++ + ++VY ITD SFEK +L++
Sbjct: 82 VDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRR 139
Query: 116 MLGN-DICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
DI + + GNK DL + R V + A TSA + ++E+F
Sbjct: 140 ARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 10/166 (6%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSV--VLRYVEDKFNEKHITTLQASFLNKKLNIAGKR---L 64
S +TY ++VVL+GE VGK+++ + V D + L + L + G+ +
Sbjct: 2 SGNTY-YRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATII 59
Query: 65 NLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN-DICL 123
L +W+ G+ + L ++ + ++VY ITD SFEK +L++ DI +
Sbjct: 60 LLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 117
Query: 124 TIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
+ GNK DL + R V + A TSA + ++E+F
Sbjct: 118 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 163
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 9/172 (5%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVE--DKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
++T KV ++GE VGK++++ + KF + + T + + I +++ +
Sbjct: 16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVEL 75
Query: 69 W--DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN---DICL 123
+ DTAG + + Y+ A+LV+D++ +SFE K W + LK + +
Sbjct: 76 FLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRA 135
Query: 124 TIAGNKIDLEKQRTVMQED-AEKYAQSVGAVHFHTSA-KMNRGIEEMFLELS 173
+ NK DL QR ++ D A+ +A + F SA + + FL ++
Sbjct: 136 VLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIA 187
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 10/163 (6%)
Query: 13 TYSFKVVLLGEGCVGKTSV--VLRYVEDKFNEKHITTLQASFLNKKLNIAGKR---LNLA 67
TY ++VVL+GE VGK+++ + V D + L + L + G+ + L
Sbjct: 5 TY-YRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLD 62
Query: 68 IWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN-DICLTIA 126
+W+ G+ + L ++ + ++VY ITD SFEK +L++ DI + +
Sbjct: 63 MWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILV 120
Query: 127 GNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
GNK DL + R V + A TSA + ++E+F
Sbjct: 121 GNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELF 163
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 10/163 (6%)
Query: 13 TYSFKVVLLGEGCVGKTSV--VLRYVEDKFNEKHITTLQASFLNKKLNIAGKR---LNLA 67
TY ++VVL+GE VGK+++ + V D + L + L + G+ + L
Sbjct: 5 TY-YRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLD 62
Query: 68 IWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN-DICLTIA 126
+W+ G+ + L ++ + ++VY ITD SFEK +L++ DI + +
Sbjct: 63 MWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILV 120
Query: 127 GNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
GNK DL + R V + A TSA + ++E+F
Sbjct: 121 GNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 12/135 (8%)
Query: 3 ANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGK 62
+NS S ++++LG GKT+++ + K + +TT+ N + + K
Sbjct: 310 SNSPGIEGLSNKEMRILMLGLDAAGKTTILYKL---KLGQS-VTTIPTVGFNVE-TVTYK 364
Query: 63 RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN--- 119
+ +WD GQ++ L YY + G + V D D D ++ + +EL +++ +
Sbjct: 365 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREM 421
Query: 120 -DICLTIAGNKIDLE 133
D + I NK DL
Sbjct: 422 RDAIILIFANKQDLP 436
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDT 71
S ++ L+G GKT+ V +FNE I T+ F +K I + + +WD
Sbjct: 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTV--GFNMRK--ITKGNVTIKLWDI 74
Query: 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAG 127
GQ RF ++ Y R + V + D D++ E KN EL +L I + + G
Sbjct: 75 GGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKN---ELHNLLDKPQLQGIPVLVLG 131
Query: 128 NKIDL 132
NK DL
Sbjct: 132 NKRDL 136
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 19/170 (11%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
+++++G GKT+++ + K E +TT+ N + + K + +WD GQ+R
Sbjct: 19 RILMVGLDAAGKTTILYKL---KLGE-IVTTIPTIGFNVE-TVEYKNICFTVWDVGGQDR 73
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML----GNDICLTIAGNKIDL 132
L Y++ + G + V D D + ++V + EL+KML D L + NK DL
Sbjct: 74 IRPLWKHYFQNTQGLIFVVDSNDRERIQEVAD---ELQKMLLVDELRDAVLLLFANKQDL 130
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAK-------MNRGIEEMFLELSQR 175
+ + + QS+ ++ A + G++ + ELS+R
Sbjct: 131 PNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 12/127 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+++++G GKTS++ + K E +TT+ N + + K ++ +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKL---KLGE-IVTTIPTIGFNVE-TVEYKNISFTVWDVGGQD 72
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKID 131
+ L YY+ + + V D D D + + +EL KML D L + NK D
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAR---EELMKMLNEDEMRNAILLVFANKHD 129
Query: 132 LEKQRTV 138
L + ++
Sbjct: 130 LPQAMSI 136
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++ L+G GKT+ V +FNE I T+ F +K I + + +WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTV--GFNMRK--ITKGNVTIKLWDIGGQP 87
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKID 131
RF ++ Y R + V + D D++ E KN EL +L I + + GNK D
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKN---ELHNLLDKPQLQGIPVLVLGNKRD 144
Query: 132 L 132
L
Sbjct: 145 L 145
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++++LG GKT+++ + K + +TT+ N + + K + +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKL---KLGQS-VTTIPTVGFNVE-TVTYKNVKFNVWDVGGQD 55
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN----DICLTIAGNKID 131
+ L YY + G + V D D D ++ + +EL +++ + D + I NK D
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQD 112
Query: 132 LE 133
L
Sbjct: 113 LP 114
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 15/171 (8%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
+++++G GKT+++ + K E +TT+ N + + K ++ +WD GQ++
Sbjct: 22 RILMVGLDAAGKTTILYKL---KLGEI-VTTIPTIGFNVE-TVEYKNISFTVWDVGGQDK 76
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDL 132
L Y++ + G + V D D D + ++ EL +ML D L + NK DL
Sbjct: 77 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQDL 133
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFH---TSAKMNRGIEEMFLELSQRMLEKA 180
+ + S+ H++ T A G+ E LS + KA
Sbjct: 134 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 184
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++++LG GKT+++ + K + +TT+ N + + K + +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKL---KLGQS-VTTIPTVGFNVE-TVTYKNVKFNVWDVGGQD 55
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN----DICLTIAGNKID 131
+ L YY + G + V D D D ++ + +EL +++ + D + I NK D
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQD 112
Query: 132 LE 133
L
Sbjct: 113 LP 114
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDT 71
S ++ L+G GKT+ V +F+E I T+ F +K + + + IWD
Sbjct: 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTV--GFNMRK--VTKGNVTIKIWDI 74
Query: 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAG 127
GQ RF ++ Y R N V + D D + E +N EL +L I + + G
Sbjct: 75 GGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRN---ELHNLLDKPQLQGIPVLVLG 131
Query: 128 NKIDL 132
NK DL
Sbjct: 132 NKRDL 136
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
++++LG GKT+++ + K + +TT+ N + + K + +WD GQ++
Sbjct: 14 RILMLGLDAAGKTTILYKL---KLGQS-VTTIPTVGFNVE-TVTYKNVKFNVWDVGGQDK 68
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN----DICLTIAGNKIDL 132
L YY + G + V D D D ++ + +EL +++ + D + I NK DL
Sbjct: 69 IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDL 125
Query: 133 E 133
Sbjct: 126 P 126
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
++++LG GKT+++ + K + +TT+ N + + K + +WD GQ++
Sbjct: 15 RILMLGLDAAGKTTILYKL---KLGQS-VTTIPTVGFNVE-TVTYKNVKFNVWDVGGQDK 69
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN----DICLTIAGNKIDL 132
L YY + G + V D D D ++ + +EL +++ + D + I NK DL
Sbjct: 70 IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDL 126
Query: 133 E 133
Sbjct: 127 P 127
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 1 MMANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA 60
+ A+ L N +++++G GKT+V+ + K E ITT+ N + +
Sbjct: 3 LFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKL---KLGEV-ITTIPTIGFNVE-TVQ 57
Query: 61 GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND 120
K ++ +WD GQ+R +L YYR + G + V D D + + + +++ML D
Sbjct: 58 YKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAR---EVMQRMLNED 114
Query: 121 ----ICLTIAGNKIDLEK 134
+ NK DL +
Sbjct: 115 ELRNAAWLVFANKQDLPE 132
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 14/139 (10%)
Query: 1 MMANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA 60
+ A+ L N +++++G GKT+V+ + K E ITT+ N + +
Sbjct: 3 LYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKL---KLGEV-ITTIPTIGFNVE-TVQ 57
Query: 61 GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND 120
K ++ +WD GQ+R +L YYR + G + V D D + + + +++ML D
Sbjct: 58 YKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAR---EVMQRMLNED 114
Query: 121 -----ICLTIAGNKIDLEK 134
+ L A NK DL +
Sbjct: 115 ELRNAVWLVFA-NKQDLPE 132
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
+++++G GKT+++ + K E +TT+ N + + K + +WD GQ++
Sbjct: 31 RILMVGLDAAGKTTILYKL---KLGEI-VTTIPTIGFNVE-TVEYKNICFTVWDVGGQDK 85
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDL 132
L Y++ + G + V D D E+V+ EL+KML D L + NK D+
Sbjct: 86 IRPLWRHYFQNTQGLIFVVDSNDR---ERVQESADELQKMLQEDELRDAVLLVFANKQDM 142
Query: 133 EKQRTV 138
V
Sbjct: 143 PNAMPV 148
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
+++++G GKT+V+ + K E ITT+ N + + K ++ +WD GQ+R
Sbjct: 2 RILMVGLDGAGKTTVLYKL---KLGEV-ITTIPTIGFNVE-TVQYKNISFTVWDVGGQDR 56
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKIDL 132
+L YYR + G + V D D + + + +++ML D + NK DL
Sbjct: 57 IRSLWRHYYRNTEGVIFVVDSNDRSRIGEAR---EVMQRMLNEDELRNAAWLVFANKQDL 113
Query: 133 EK 134
+
Sbjct: 114 PE 115
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
+++ LG GKT+++ + K + +TT+ N + + K + +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKL---KLGQS-VTTIPTVGFNVE-TVTYKNVKFNVWDVGGQDK 56
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN----DICLTIAGNKIDL 132
L YY + G + V D D D ++ + +EL +++ + D + I NK DL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREXRDAIILIFANKQDL 113
Query: 133 E 133
Sbjct: 114 P 114
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+++++G GKT+++ + K E +TT+ N + + K ++ +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKL---KLGEI-VTTIPTIGFNVE-TVEYKNISFTVWDVGGQD 55
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKID 131
+ L Y++ + G + V D D E+V +EL +ML D L + NK D
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 112
Query: 132 L 132
L
Sbjct: 113 L 113
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
+++++G GKT+++ + K E +TT+ N + + K ++ +WD GQ++
Sbjct: 167 RILMVGLDAAGKTTILYKL---KLGEI-VTTIPTIGFNVE-TVEYKNISFTVWDVGGQDK 221
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDL 132
L Y++ + G + V D D E+V +EL +ML D L + NK DL
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQDL 278
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 14/171 (8%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKK-LNIAG-------KRLNLA 67
KV L+G+G GKTS++ + + + F+ K T + + K+ NI G K
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 68 IWDTAGQERFHALGPIYYRMSNGAVLVYDI-TDEDSFEKVKNWVKELKKMLGNDICLTIA 126
WD GQE HA + S+ +L+ D TD + W++ ++K G + +
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNK----HYWLRHIEKYGGKSPVIVVM 157
Query: 127 GNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
NKID + Q+ + ++ S K G+E + L +L
Sbjct: 158 -NKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVL 207
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
+++++G GKT+++ + K E +TT+ N + + K ++ +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKL---KLGEI-VTTIPTIGFNVE-TVEYKNISFTVWDVGGQDK 73
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDL 132
L Y++ + G + V D D E+V +EL +ML D L + NK DL
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQDL 130
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
+++++G GKT+++ + K E +TT+ N + + K ++ +WD GQ++
Sbjct: 18 RILMVGLDAAGKTTILYKL---KLGEI-VTTIPTIGFNVE-TVEYKNISFTVWDVGGQDK 72
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDL 132
L Y++ + G + V D D E+V +EL +ML D L + NK DL
Sbjct: 73 IRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQDL 129
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++++LG GKT+++ + K + +TT+ N + + K + +WD G +
Sbjct: 4 MRILMLGLDAAGKTTILYKL---KLGQS-VTTIPTVGFNVE-TVTYKNVKFNVWDVGGLD 58
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN----DICLTIAGNKID 131
+ L YY + G + V D D D ++ + +EL +++ + D + I NK D
Sbjct: 59 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQD 115
Query: 132 LE 133
L
Sbjct: 116 LP 117
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
+++++G GKT+++ + K E +TT+ N + + + ++ +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKV---KLGEV-VTTIPTIGFNVE-TVEFRNISFTVWDVGGQDK 73
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDL 132
L YY ++G + V D D E++ + +EL +M+ D + + NK DL
Sbjct: 74 IRPLWRHYYSNTDGLIFVVDSNDR---ERIDDAREELHRMINEEELKDAIILVFANKQDL 130
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++++LG GKT+++ + K + +TT+ N + + K + +WD G +
Sbjct: 3 MRILMLGLDAAGKTTILYKL---KLGQS-VTTIPTVGFNVE-TVTYKNVKFNVWDVGGLD 57
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN----DICLTIAGNKID 131
+ L YY + G + V D D D ++ + +EL +++ + D + I NK D
Sbjct: 58 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQD 114
Query: 132 LE 133
L
Sbjct: 115 LP 116
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
++++LG GKT+++ + K + +TT+ N + + K + +WD G ++
Sbjct: 15 RILMLGLDAAGKTTILYKL---KLGQS-VTTIPTVGFNVE-TVTYKNVKFNVWDVGGLDK 69
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN----DICLTIAGNKIDL 132
L YY + G + V D D D ++ + +EL +++ + D + I NK DL
Sbjct: 70 IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDL 126
Query: 133 E 133
Sbjct: 127 P 127
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
S +++++G GKT+++ + K E +TT+ N + + K ++ +WD G
Sbjct: 2 SMRILMVGLDAAGKTTILYKL---KLGEI-VTTIPTIGFNVE-TVEYKNISFTVWDVGGL 56
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKI 130
++ L Y++ + G + V D D E+V +EL +ML D L + NK
Sbjct: 57 DKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQ 113
Query: 131 DL 132
DL
Sbjct: 114 DL 115
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 23/175 (13%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQAS--FLNKKLNIAGKRLNLAIWDTAG 73
++++LG GKT+++ KFN + I T+ + F K L G +LN IWD G
Sbjct: 17 LRLLMLGLDNAGKTTIL-----KKFNGEDIDTISPTLGFNIKTLEHRGFKLN--IWDVGG 69
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNK 129
Q+ + Y+ ++G + V D D +++++ +EL+ +L + L I NK
Sbjct: 70 QKSLRSYWRNYFESTDGLIWVVDSADR---QRMQDCQRELQSLLVEERLAGATLLIFANK 126
Query: 130 IDLEKQ------RTVMQEDA-EKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
DL R V++ D+ + + T + GI+ + ++S R+
Sbjct: 127 QDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRIF 181
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 12/135 (8%)
Query: 1 MMANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA 60
+ ++ D+ S ++++LG GKT+++ R + T + + ++
Sbjct: 4 IFSSMFDKLWGSNKELRILILGLDGAGKTTILYR-----LQIGEVVTTKPTIGFNVETLS 58
Query: 61 GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-- 118
K L L +WD GQ YY + + V D TD+D KEL ML
Sbjct: 59 YKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTAS---KELHLMLQEE 115
Query: 119 --NDICLTIAGNKID 131
D L + NK D
Sbjct: 116 ELQDAALLVFANKQD 130
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 16/123 (13%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQAS--FLNKKLNIAGKRLNLAIWDTAG 73
++++LG GKT+++ KFN + + T+ + F K L G +LN IWD G
Sbjct: 19 LRLLMLGLDNAGKTTIL-----KKFNGEDVDTISPTLGFNIKTLEHRGFKLN--IWDVGG 71
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNK 129
Q+ + Y+ ++G + V D D +++++ +EL+ +L + L I NK
Sbjct: 72 QKSLRSYWRNYFESTDGLIWVVDSADR---QRMQDCQRELQSLLVEERLAGATLLIFANK 128
Query: 130 IDL 132
DL
Sbjct: 129 QDL 131
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 16/123 (13%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQAS--FLNKKLNIAGKRLNLAIWDTAG 73
++++LG GKT+++ KFN + + T+ + F K L G +LN IWD G
Sbjct: 19 LRLLMLGLDNAGKTTIL-----KKFNGEDVDTISPTLGFNIKTLEHRGFKLN--IWDVGG 71
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNK 129
Q+ + Y+ ++G + V D D +++++ +EL+ +L + L I NK
Sbjct: 72 QKSLRSYWRNYFESTDGLIWVVDSADR---QRMQDCQRELQSLLVEERLAGATLLIFANK 128
Query: 130 IDL 132
DL
Sbjct: 129 QDL 131
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 25/164 (15%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++++LG GKT+++ R + +TT+ N + + K L +WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEV----VTTIPTIGFNVE-TVTYKNLKFQVWDLGGQT 57
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKID 131
YY ++ + V D D D K+ EL ML + L + NK D
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS---ELVAMLEEEELRKAILVVFANKQD 114
Query: 132 LEKQRTVMQEDAEKYAQSVGAVH--------FHTSAKMNRGIEE 167
+E+ T + A ++G F TSA G++E
Sbjct: 115 MEQAMT-----PSEMANALGLPALKDRKWQIFKTSATKGTGLDE 153
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 1 MMANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA 60
+ A+ L N +++++G GKT+V+ + K E ITT+ N + +
Sbjct: 3 LFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKL---KLGEV-ITTIPTIGFNVEC-VQ 57
Query: 61 GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND 120
++ +WD GQ+R +L YY + G + V D D + + + +++ML D
Sbjct: 58 YCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAR---EVMQRMLNED 114
Query: 121 -IC---LTIAGNKIDLEK 134
+C + NK DL +
Sbjct: 115 ELCNAAWLVFANKQDLPE 132
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 25/174 (14%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
KV+++G GKT+++ ++ NE T+ +++ I R +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQF---SMNEVVHTSPTIGSNVEEIVINNTRF--LMWDIGGQES 72
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKIDL 132
+ YY + ++V D TD + + +EL KML ++ L I NK D+
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTR---EELYKMLAHEDLRKAGLLIFANKQDV 129
Query: 133 EKQRTVMQ----------EDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
++ TV + +D + + Q+ A+ T + +G+E M L R+
Sbjct: 130 KECMTVAEISQFLKLTSIKDHQWHIQACCAL---TGEGLCQGLEWMMSRLKIRL 180
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
S+ +++LLG GKT+++ + + + HIT Q F K + G +LN +W
Sbjct: 12 SAPDQEVRILLLGLDNAGKTTLLKQLASEDIS--HITPTQG-FNIKSVQSQGFKLN--VW 66
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEK 105
D GQ + Y+ ++ + V D D FE+
Sbjct: 67 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEE 102
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
S+ +++LLG GKT+++ + + + HIT Q F K + G +LN +W
Sbjct: 11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDIS--HITPTQG-FNIKSVQSQGFKLN--VW 65
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEK 105
D GQ + Y+ ++ + V D D FE+
Sbjct: 66 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEE 101
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 25/167 (14%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
T ++++LG GKT+++ R + +TT+ N + + K L +WD
Sbjct: 2 TREMRILILGLDGAGKTTILYRLQVGEV----VTTIPTIGFNVE-TVTYKNLKFQVWDLG 56
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGN 128
G YY ++ + V D D D K+ EL ML + L + N
Sbjct: 57 GLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS---ELVAMLEEEELRKAILVVFAN 113
Query: 129 KIDLEKQRTVMQEDAEKYAQSVGAVH--------FHTSAKMNRGIEE 167
K D+E+ T + + A S+G F TSA G++E
Sbjct: 114 KQDMEQAMT-----SSEMANSLGLPALKDRKWQIFKTSATKGTGLDE 155
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 25/173 (14%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
KV+++G GKT+++ ++ NE T+ +++ I R +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQF---SMNEVVHTSPTIGSNVEEIVINNTRF--LMWDIGGQES 72
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKIDL 132
+ YY + ++V D TD + + +EL KML ++ L I NK D+
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTR---EELYKMLAHEDLRKAGLLIFANKQDV 129
Query: 133 EKQRTVMQ----------EDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175
++ TV + +D + + Q+ A+ T + +G+E M L R
Sbjct: 130 KECMTVAEISQFLKLTSIKDHQWHIQACCAL---TGEGLCQGLEWMMSRLKIR 179
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 27/177 (15%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQAS--FLNKKLNIAGKRLNLAIWDTAG 73
++++LG GKT+++ KFN + + T+ + F K L G +LN IWD G
Sbjct: 2 LRLLMLGLDNAGKTTIL-----KKFNGEDVDTISPTLGFNIKTLEHRGFKLN--IWDVGG 54
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNK 129
+ + Y+ ++G + V D D +++++ +EL+ +L + L I NK
Sbjct: 55 LKSLRSYWRNYFESTDGLIWVVDSADR---QRMQDCQRELQSLLVEERLAGATLLIFANK 111
Query: 130 IDLEKQRT--VMQEDAEKYAQSVGAVHFH-------TSAKMNRGIEEMFLELSQRML 177
DL + +QE E S+ + H+ T + GI+ + ++S R+
Sbjct: 112 QDLPGALSCNAIQEALE--LDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRVF 166
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
KV+++G GKT+++ ++ NE T+ +++ I R +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQF---SMNEVVHTSPTIGSNVEEIVINNTRF--LMWDIGGQES 78
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKIDL 132
+ YY + ++V D TD + + +EL KML ++ L I NK D+
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDRERISVTR---EELYKMLAHEDLRKAGLLIFANKQDV 135
Query: 133 EKQRTVMQ 140
++ TV +
Sbjct: 136 KECMTVAE 143
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
KV+++G GKT+++ ++ NE T+ +++ I R +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQF---SMNEVVHTSPTIGSNVEEIVINNTRF--LMWDIGGQES 77
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKIDL 132
+ YY + ++V D TD + + +EL KML ++ L I NK D+
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTR---EELYKMLAHEDLRKAGLLIFANKQDV 134
Query: 133 EKQRTV 138
++ TV
Sbjct: 135 KECMTV 140
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
+++LLG GKT+++ + + + HIT Q F K + G +LN +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDIS--HITPTQG-FNIKSVQSQGFKLN--VWDIGGQRK 60
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEK 105
Y+ ++ + V D D FE+
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEE 89
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 25/166 (15%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
KV+++G GKT+++ +++ ++ H + S + + I K + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEV--VHTSPTIGSNVEE---IVVKNTHFLMWDIGGQES 72
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKIDL 132
+ YY + +LV D D + K +EL +ML ++ + I NK D+
Sbjct: 73 LRSSWNTYYSNTEFIILVVDSIDRERLAITK---EELYRMLAHEDLRKAAVLIFANKQDM 129
Query: 133 EKQRTVMQ----------EDAEKYAQSVGAVHFHTSAKMNRGIEEM 168
+ T + +D + QS A+ T + +G+E M
Sbjct: 130 KGCMTAAEISKYLTLSSIKDHPWHIQSCCAL---TGEGLCQGLEWM 172
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 27/167 (16%)
Query: 26 VGKTSVVLRYVEDKFNEKHITTLQAS--FLNKKLNIAGKRLNLAIWDTAGQERFHALGPI 83
GKT+++ KFN + + T+ + F K L G +LN IWD GQ+ +
Sbjct: 29 AGKTTIL-----KKFNGEDVDTISPTLGFNIKTLEHRGFKLN--IWDVGGQKSLRSYWRN 81
Query: 84 YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKIDLEK--QRT 137
Y+ ++G + V D D ++ ++ +EL+ +L + L I NK DL
Sbjct: 82 YFESTDGLIWVVDSADR---QRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXN 138
Query: 138 VMQEDAEKYAQSVGAVHFH-------TSAKMNRGIEEMFLELSQRML 177
+QE E S+ + H+ T + GI+ + ++S R+
Sbjct: 139 AIQEALE--LDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRVF 183
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNE--KHITTLQASFLNKKLNIAGKR---LNLAIWDT 71
K+ ++G GKT+++ + + K ++ T+ + + I KR L L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 72 AGQERFHALGPIYYRMSNGAVLVYDITD-EDSFEKVKNWVKELKKMLGNDICLTIAGNKI 130
AG+E F++ P + + VYD++ + + K W+ +K + + + G +
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 120
Query: 131 DL--EKQR 136
D+ EKQR
Sbjct: 121 DVSDEKQR 128
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 33.5 bits (75), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNE--KHITTLQASFLNKKLNIAGKR---LNLAIWDT 71
K+ ++G GKT+++ + + K ++ T+ + + I KR L L +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 72 AGQERFHALGPIYYRMSNGAVLVYDITD-EDSFEKVKNWVKELKKMLGNDICLTIAGNKI 130
AG+E F++ P + + VYD++ + + K W+ +K + + + G +
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 122
Query: 131 DL--EKQR 136
D+ EKQR
Sbjct: 123 DVSDEKQR 130
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
+++LLG GKT+++ + + + HIT Q F K + G +LN +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDIS--HITPTQG-FNIKSVQSQGFKLN--VWDIGGLRK 60
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEK 105
Y+ ++ + V D D FE+
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEE 89
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 17/140 (12%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDT 71
S +VV+ G GKT+++ + + + KHIT A+ R+ ++D
Sbjct: 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHIT---ATVGYNVETFEKGRVAFTVFDM 70
Query: 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML-----------GND 120
G ++F L YY + + V D +D VK+ E++ ML G
Sbjct: 71 GGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKS---EIQAMLKHEDIRRELPGGGR 127
Query: 121 ICLTIAGNKIDLEKQRTVMQ 140
+ NK+D +T +
Sbjct: 128 VPFLFFANKMDAAGAKTAAE 147
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 18/124 (14%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG---KRLNLAIWDTA 72
+V++LG GKTS++ R H+ + + +N+ K ++ +WD
Sbjct: 23 IRVLMLGLDNAGKTSILYRL--------HLGDVVTTVPTVGVNLETLQYKNISFEVWDLG 74
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGN 128
GQ Y+ ++ + V D TD D K+ EL +L D L I N
Sbjct: 75 GQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKH---ELYALLDEDELRKSLLLIFAN 131
Query: 129 KIDL 132
K DL
Sbjct: 132 KQDL 135
>pdb|2HX0|A Chain A, Three-Dimensional Structure Of The Hypothetical Protein
From Salmonella Cholerae-Suis (Aka Salmonella Enterica)
At The Resolution 1.55 A. Northeast Structural Genomics
Target Scr59
Length = 154
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 24 GCVGK-TSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
GC G T V LRY + T + LN L + G+ L+LA+ D G
Sbjct: 51 GCTGSLTDVALRYAGQEATTSLTGTFEVISLNGTLELTGEHLHLAVSDPYG 101
>pdb|2NMU|A Chain A, Crystal Structure Of The Hypothetical Protein From
Salmonella Typhimurium Lt2. Northeast Structural
Genomics Consortium Target Str127
Length = 156
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 24 GCVGK-TSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
GC G T V LRY + T + LN L + G+ L+LA+ D G
Sbjct: 51 GCTGSLTDVALRYAGQEATTSLTGTFEVISLNGTLELTGEHLHLAVSDPYG 101
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 79/180 (43%), Gaps = 15/180 (8%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDT 71
S ++ +LG+ GK+S++ R++ + T ++ K++ + G+ + I +
Sbjct: 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKT--ESEQYKKEMLVDGQTHLVLIREE 61
Query: 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG---NDICLTIAG- 127
AG A + ++ + V+ + DE+SF+ V +L + G + L + G
Sbjct: 62 AG-----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGT 116
Query: 128 -NKIDLEKQRTVMQEDAEKYAQSVG-AVHFHTSAKMNRGIEEMFLELSQRM--LEKAQEF 183
++I R V A + ++ T A ++ +F E++Q++ L K Q+
Sbjct: 117 QDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQL 176
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
S T ++++LG GKT+++ R + +TT+ N + + K L +W
Sbjct: 2 SHXTREXRILILGLDGAGKTTILYRLQVGEV----VTTIPTIGFNVE-TVTYKNLKFQVW 56
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDED 101
D G YY ++ + V D D D
Sbjct: 57 DLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD 88
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 79/180 (43%), Gaps = 15/180 (8%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDT 71
S ++ +LG+ GK+S++ R++ + T ++ K++ + G+ + I +
Sbjct: 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKT--ESEQYKKEMLVDGQTHLVLIREE 61
Query: 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG---NDICLTIAG- 127
AG A + ++ + V+ + DE+SF+ V +L + G + L + G
Sbjct: 62 AG-----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGT 116
Query: 128 -NKIDLEKQRTVMQEDAEKYAQSVG-AVHFHTSAKMNRGIEEMFLELSQRM--LEKAQEF 183
++I R V A + ++ T A ++ +F E++Q++ L K Q+
Sbjct: 117 QDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQL 176
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 18 VVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA----- 72
+ +LG GK+++ ++++ +F ++ L+ ++ +++ + + ++L + DTA
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTADLDTP 82
Query: 73 -GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELK---KMLGNDICLTIAGN 128
ER Y ++ ++VY + SF+ ++++ L K I + GN
Sbjct: 83 RNCER-------YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGN 135
Query: 129 KIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMN-RGIEEMFLE 171
K+D+ + R V + + A G + F SA ++ ++ +F E
Sbjct: 136 KLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHE 179
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 18 VVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF 77
V+ LG GKT+++ + ++I + K L+ ++D +GQ R+
Sbjct: 24 VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEK---FKSSSLSFTVFDMSGQGRY 80
Query: 78 HALGPIYYRMSNGAVLVYDITD 99
L YY+ + V D +D
Sbjct: 81 RNLWEHYYKEGQAIIFVIDSSD 102
>pdb|2EEN|A Chain A, Structure Of Ph1819 Protein From Pyrococcus Horikoshii Ot3
pdb|2EEN|B Chain B, Structure Of Ph1819 Protein From Pyrococcus Horikoshii Ot3
Length = 183
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 119 NDICLTIAGNKIDLEKQRTVM------QEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171
N++ LT G KID EK +T + QED +KY + + + F K+ + E+ ++E
Sbjct: 60 NEVFLTYKGPKID-EKSKTRLEIEVEIQEDVDKYFELLDRLGFKEVLKVVKTREKYYVE 117
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Query: 101 DSFEKVKNWVKEL--KKMLG 118
D FEK+KNW KE K+M+G
Sbjct: 107 DDFEKIKNWQKEAFHKQMMG 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,858,057
Number of Sequences: 62578
Number of extensions: 220329
Number of successful extensions: 1438
Number of sequences better than 100.0: 357
Number of HSP's better than 100.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 359
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)