BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8722
(223 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17R06|RAB21_BOVIN Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 PE=2 SV=1
Length = 222
Score = 322 bits (824), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 151/211 (71%), Positives = 179/211 (84%), Gaps = 2/211 (0%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
TYSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIWDTA
Sbjct: 14 TYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTA 73
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQERFHALGPIYYR SNGA+LVYDITDEDSF+KVKNWVKEL+KMLGN+ICL I GNK+DL
Sbjct: 74 GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKVDL 133
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELS 192
EK+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E AQ + AK + S
Sbjct: 134 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSS 193
Query: 193 RRGSMRRNVVVVEDEDLPTSSSTKSGCCLTG 223
+ G+ RR V +++DE P + S GCC +G
Sbjct: 194 QPGAARRGVQIIDDE--PQAQSVGGGCCSSG 222
>sp|Q9UL25|RAB21_HUMAN Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3
Length = 225
Score = 320 bits (819), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 150/211 (71%), Positives = 179/211 (84%), Gaps = 2/211 (0%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
YSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIWDTA
Sbjct: 17 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTA 76
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQERFHALGPIYYR SNGA+LVYDITDEDSF+KVKNWVKEL+KMLGN+ICL I GNKIDL
Sbjct: 77 GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 136
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELS 192
EK+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E AQ + AK + S
Sbjct: 137 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSS 196
Query: 193 RRGSMRRNVVVVEDEDLPTSSSTKSGCCLTG 223
+ G+ RR V +++DE P + ++ GCC +G
Sbjct: 197 QPGTARRGVQIIDDE--PQAQTSGGGCCSSG 225
>sp|P35282|RAB21_MOUSE Ras-related protein Rab-21 OS=Mus musculus GN=Rab21 PE=1 SV=4
Length = 222
Score = 316 bits (810), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 150/210 (71%), Positives = 179/210 (85%), Gaps = 3/210 (1%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
YSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIWDTAG
Sbjct: 16 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 75
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERFHALGPIYYR SNGA+LVYD+TDEDSF+KVKNWVKEL+KMLGN+ICL I GNKIDLE
Sbjct: 76 QERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 135
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSR 193
K+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E AQ + AK + S+
Sbjct: 136 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQ 195
Query: 194 RGSMRRNVVVVEDEDLPTSSSTKSGCCLTG 223
G+ RR V +++DE P + S+ GCC +G
Sbjct: 196 AGAARRGVQIIDDE--PQAQSS-GGCCSSG 222
>sp|P55745|RAB21_CANFA Ras-related protein Rab-21 OS=Canis familiaris GN=RAB21 PE=3 SV=3
Length = 223
Score = 308 bits (789), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 145/195 (74%), Positives = 170/195 (87%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
YSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIWDTA
Sbjct: 15 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTA 74
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQERFHALGPIYYR SNGA+LVYDITDEDSF+KVKNWVKEL+KMLGN+ICL I GNKIDL
Sbjct: 75 GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 134
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELS 192
EK+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E AQ + AK + S
Sbjct: 135 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSS 194
Query: 193 RRGSMRRNVVVVEDE 207
+ G+ RR V +++DE
Sbjct: 195 QPGAARRGVQIIDDE 209
>sp|Q6AXT5|RAB21_RAT Ras-related protein Rab-21 OS=Rattus norvegicus GN=Rab21 PE=2 SV=1
Length = 223
Score = 307 bits (787), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 144/194 (74%), Positives = 170/194 (87%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
YSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIWDTAG
Sbjct: 16 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 75
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERFHALGPIYYR SNGA+LVYD+TDEDSF+KVKNWVKEL+KMLGN+ICL I GNKIDLE
Sbjct: 76 QERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 135
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSR 193
K+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E AQ + AK + S+
Sbjct: 136 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQ 195
Query: 194 RGSMRRNVVVVEDE 207
G+ RR V +++DE
Sbjct: 196 AGAARRGVQIIDDE 209
>sp|Q8WQ53|RAB21_GEOCY Ras-related protein Rab-21 OS=Geodia cydonium GN=RAB21 PE=2 SV=1
Length = 229
Score = 262 bits (669), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 127/229 (55%), Positives = 165/229 (72%), Gaps = 11/229 (4%)
Query: 2 MANSLD--RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNI 59
MA+ D R +T KVVLLGEG VGKTS+VLRY E+KFN+KH TLQASF+ K+LNI
Sbjct: 1 MASPSDASRRRQATVKAKVVLLGEGAVGKTSLVLRYSENKFNDKHEQTLQASFVEKRLNI 60
Query: 60 AGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN 119
GKR+ LAIWDTAGQER+HALGPIYYR S GA++VYDITDEDSF K +NW+KELK+MLG+
Sbjct: 61 GGKRIQLAIWDTAGQERYHALGPIYYRDSQGAIIVYDITDEDSFHKARNWIKELKRMLGD 120
Query: 120 DICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+ L I GNKIDL++QRTV ++DA +YA+SVGA H++TSAK ++G+ E+FL+L++R+LE
Sbjct: 121 KVTLCIVGNKIDLDRQRTVSEKDALEYAESVGAKHYYTSAKQSKGVAELFLDLAKRILEA 180
Query: 180 AQEFDL--------AKASELSRRGSMRRNVVVVEDEDLPTSSSTKSGCC 220
A +S + R ++V +D + P S GCC
Sbjct: 181 NPPSSSTPPESQRGAPSSHPPSQPRQRSTLIVTDDSEQP-SPKQGGGCC 228
>sp|P34142|RAB21_DICDI Ras-related protein Rab-21 OS=Dictyostelium discoideum GN=rab21
PE=1 SV=2
Length = 212
Score = 252 bits (644), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 120/207 (57%), Positives = 152/207 (73%), Gaps = 4/207 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
SFKVVLLGEGCVGKTS+V RY+++ FN+KH+ T A F K +NI GKR+ L IWDTAGQ
Sbjct: 7 SFKVVLLGEGCVGKTSIVFRYIDNIFNDKHLMTQHAGFFQKHINIGGKRICLTIWDTAGQ 66
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
ERFHALGPIYYR S GA++VYDITD DSF K KNW+KELK MLGNDI L I GNK DLEK
Sbjct: 67 ERFHALGPIYYRGSQGALVVYDITDNDSFIKAKNWIKELKTMLGNDISLCIIGNKCDLEK 126
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRR 194
R + DAE YA+SVGA+H+ TSAK+N+GIEE+FL+L++RM+ + + + + +
Sbjct: 127 TRVIPLADAEAYAKSVGAIHYSTSAKLNKGIEELFLDLTRRMILNSSGVVIHSNTNTTGQ 186
Query: 195 GSMR-RNVVVVEDEDLPTSSSTKSGCC 220
+ R + +V D D S + + GCC
Sbjct: 187 TTNRSERIPIVPDSD---SGNKQPGCC 210
>sp|Q98932|RAB5C_CHICK Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1
Length = 216
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 125/205 (60%), Gaps = 12/205 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+ D+F + KNWVKEL++ +I + +AGNK DL +
Sbjct: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVIALAGNKADLATK 141
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRRG 195
R V +DA+ YA + TSAK + E+F+ ++++ L K + G
Sbjct: 142 RAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKK---------LPKNEPQNAPG 192
Query: 196 SMRRNVVVVEDEDLPTSSSTKSGCC 220
RN VV E +S ++S CC
Sbjct: 193 GPGRNRVVDLQE---SSQPSRSQCC 214
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1
Length = 216
Score = 161 bits (407), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 125/205 (60%), Gaps = 12/205 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+ D+F + KNWVKEL++ +I + +AGNK DL +
Sbjct: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRRG 195
R V ++A+ YA + TSAK + E+F+ ++++ L K + G
Sbjct: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK---------LPKNEPQNAAG 192
Query: 196 SMRRNVVVVEDEDLPTSSSTKSGCC 220
+ RN V E+ P S +S CC
Sbjct: 193 APSRNRGVDLQENSPAS---RSQCC 214
>sp|Q86JP3|RAB5A_DICDI Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A
PE=3 SV=1
Length = 201
Score = 161 bits (407), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 131/212 (61%), Gaps = 14/212 (6%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
N++ + FK+VLLGE VGK+S+VLR+V F + +T+ A+FL + + + + I
Sbjct: 3 NNNKIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLNDTTVKFEI 62
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGN 128
WDTAGQER+H L P+YYR + A++VYDI EDSFE+ WVKEL++ +I + +AGN
Sbjct: 63 WDTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALAGN 122
Query: 129 KIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKA 188
K+DL +R V +A++YA+ G + TSAK ++ + E+F+E+++++ +
Sbjct: 123 KLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKKLPK---------- 172
Query: 189 SELSRRGSMRRNVVVVEDEDLPTSSSTKSGCC 220
+ +R GS R + +++ + + K+ CC
Sbjct: 173 TPTTRPGSGRVAIAPIDNGN----TGKKNKCC 200
>sp|Q9UL26|RB22A_HUMAN Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2
Length = 194
Score = 160 bits (406), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 107/161 (66%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
KV LLG+ VGK+S+V R+VED F+ T+ ASF+ K + + IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF AL P+YYR S A++VYDIT E++F +KNWVKEL++ +I + IAGNK DL
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDV 125
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R VM+ DA+ YA S+ A+ TSAK I E+F+E+S+R+
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>sp|Q58DS9|RAB5C_BOVIN Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1
Length = 216
Score = 160 bits (406), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 126/205 (61%), Gaps = 12/205 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+ D+F + KNWVKEL++ +I + +AGNK DL +
Sbjct: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRRG 195
R V ++A+ YA+ + TSAK + E+F+ ++++ L K + G
Sbjct: 142 RAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKK---------LPKNEPQNAAG 192
Query: 196 SMRRNVVVVEDEDLPTSSSTKSGCC 220
+ RN V E+ P S +S CC
Sbjct: 193 APGRNRGVDLQENNPAS---RSQCC 214
>sp|P35285|RB22A_MOUSE Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2
Length = 194
Score = 160 bits (406), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 106/161 (65%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
KV LLG+ VGK+S+V R+VED F+ T+ ASF+ K + + IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF AL P+YYR S A++VYDIT E++F +KNWV+EL++ I + IAGNK DL
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R VM+ DA+ YA S+ A+ TSAK I E+F+E+S+R+
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>sp|Q5R7L7|RAB5C_PONAB Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1
Length = 216
Score = 160 bits (404), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 125/205 (60%), Gaps = 12/205 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+ D+F + KNWVKEL++ +I + +AGNK DL +
Sbjct: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRRG 195
R V ++A+ YA + TSAK + E+F+ ++++ L K + G
Sbjct: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK---------LPKNEPQNATG 192
Query: 196 SMRRNVVVVEDEDLPTSSSTKSGCC 220
+ RN V E+ P S +S CC
Sbjct: 193 APGRNRGVDLQENNPAS---RSQCC 214
>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2
Length = 216
Score = 160 bits (404), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 125/205 (60%), Gaps = 12/205 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+ D+F + KNWVKEL++ +I + +AGNK DL +
Sbjct: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRRG 195
R V ++A+ YA + TSAK + E+F+ ++++ L K + G
Sbjct: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK---------LPKNEPQNATG 192
Query: 196 SMRRNVVVVEDEDLPTSSSTKSGCC 220
+ RN V E+ P S +S CC
Sbjct: 193 APGRNRGVDLQENNPAS---RSQCC 214
>sp|Q921E2|RAB31_MOUSE Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1
Length = 194
Score = 159 bits (403), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 108/161 (67%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
KV LLG+ VGK+S+V R+V+D F+ T+ ASF+ K + + IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 65
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RFH+L P+YYR S AV+VYDIT +DSF +K WVKELK+ +I + IAGNK DL
Sbjct: 66 RFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 125
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R V +DA++YA+S+GA+ TSAK IEE+F +S+++
Sbjct: 126 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 166
>sp|Q13636|RAB31_HUMAN Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1
Length = 194
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 108/161 (67%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
KV LLG+ VGK+S+V R+V+D F+ T+ ASF+ K + + IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 65
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RFH+L P+YYR S AV+VYDIT +DSF +K WVKELK+ +I + IAGNK DL
Sbjct: 66 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 125
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R V +DA++YA+S+GA+ TSAK IEE+F +S+++
Sbjct: 126 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 166
>sp|Q0IIG7|RAB5A_BOVIN Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1
Length = 215
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 129/205 (62%), Gaps = 12/205 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 80
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+E+SF + KNWVKEL++ +I + ++GNK DL +
Sbjct: 81 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 140
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRRG 195
R V ++A+ YA + TSAK + + E+F+ +++++ + + A S RG
Sbjct: 141 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGAN----STRG 196
Query: 196 SMRRNVVVVEDEDLPTSSSTKSGCC 220
R V + E PT T+S CC
Sbjct: 197 ---RGVDLTE----PT-QPTRSQCC 213
>sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2
SV=1
Length = 215
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 129/205 (62%), Gaps = 12/205 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 80
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+E+SF + KNWVKEL++ +I + ++GNK DL +
Sbjct: 81 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 140
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRRG 195
R V ++A+ YA + TSAK + + E+F+ +++++ + + A S RG
Sbjct: 141 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGAN----SARG 196
Query: 196 SMRRNVVVVEDEDLPTSSSTKSGCC 220
R V + E PT T+S CC
Sbjct: 197 ---RGVDLTE----PT-QPTRSQCC 213
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1
Length = 215
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 129/205 (62%), Gaps = 12/205 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 80
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+E+SF + KNWVKEL++ +I + ++GNK DL +
Sbjct: 81 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 140
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRRG 195
R V ++A+ YA + TSAK + + E+F+ +++++ + + A S RG
Sbjct: 141 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGAN----SARG 196
Query: 196 SMRRNVVVVEDEDLPTSSSTKSGCC 220
R V + E PT T+S CC
Sbjct: 197 ---RGVDLTE----PT-QPTRSQCC 213
>sp|Q6GQP4|RAB31_RAT Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=1 SV=2
Length = 194
Score = 159 bits (401), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 108/161 (67%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
KV LLG+ VGK+S+V R+V+D F+ T+ ASF+ K + + IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 65
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RFH+L P+YYR S AV+VYDIT +DSF +K WVKELK+ +I + IAGNK DL
Sbjct: 66 RFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 125
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R V +DA++YA+S+GA+ TSAK IEE+F +S+++
Sbjct: 126 REVPLKDAKEYAESIGALVVETSAKNAINIEELFQGISRQI 166
>sp|Q8MYF2|RABJ_DICDI Ras-related protein RabJ OS=Dictyostelium discoideum GN=rabJ PE=3
SV=1
Length = 256
Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 115/168 (68%), Gaps = 1/168 (0%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
KVVLLG VGKT++ LRYV+ F ++ +T+ ASFL + +NI G ++ IWD+AGQ+R
Sbjct: 11 KVVLLGSSDVGKTALSLRYVDGIFPKRLTSTIGASFLTRTINIEGNKIKYLIWDSAGQDR 70
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136
F +L +YYR + A+LV+DIT + +F+ VK WV+ELK + +I + + GNKIDLE+ R
Sbjct: 71 FRSLATLYYRGACVAILVFDITQQKTFDIVKGWVEELKANIQEEIIMVLCGNKIDLEQNR 130
Query: 137 TVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM-LEKAQEF 183
V E A+ YA + A++ TSAK N G+E MFLE+ +++ L K E+
Sbjct: 131 QVKSETAKLYADEINAMYVETSAKENEGVEGMFLEIGKKLILNKHNEY 178
>sp|P51154|RB22A_CANFA Ras-related protein Rab-22A OS=Canis familiaris GN=RAB22A PE=1 SV=1
Length = 194
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 106/161 (65%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
KV LLG+ VGK+S+V R+VED F+ T+ ASF+ K + + IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
F AL P+YYR S A++VYDIT E++F +KNWVKEL++ +I + IAGNK DL
Sbjct: 66 AFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDV 125
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R VM+ DA+ YA S+ A+ TSAK I E+F+E+S+R+
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2
Length = 215
Score = 157 bits (398), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 129/205 (62%), Gaps = 12/205 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 80
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+E+SF + KNWVKEL++ +I + ++GNK DL +
Sbjct: 81 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 140
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRRG 195
R V ++A+ YA + TSAK + + E+F+ +++++ + + A S RG
Sbjct: 141 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGAN----SARG 196
Query: 196 SMRRNVVVVEDEDLPTSSSTKSGCC 220
R V + E PT T++ CC
Sbjct: 197 ---RGVDLTE----PT-QPTRNQCC 213
>sp|Q5RBG1|RAB5B_PONAB Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1
Length = 215
Score = 157 bits (397), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 124/205 (60%), Gaps = 12/205 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 21 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 80
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT++++F + K WVKEL++ I + +AGNK DL +
Sbjct: 81 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 140
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRRG 195
R V E+A+ YA + TSAK + ++FL ++++ L K++ +L A+ SR
Sbjct: 141 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK-LPKSEPQNLGGAAGRSRGV 199
Query: 196 SMRRNVVVVEDEDLPTSSSTKSGCC 220
+ S KS CC
Sbjct: 200 DLHEQ-----------SQQNKSQCC 213
>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1
Length = 215
Score = 157 bits (397), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 124/205 (60%), Gaps = 12/205 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 21 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 80
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT++++F + K WVKEL++ I + +AGNK DL +
Sbjct: 81 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 140
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRRG 195
R V E+A+ YA + TSAK + ++FL ++++ L K++ +L A+ SR
Sbjct: 141 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK-LPKSEPQNLGGAAGRSRGV 199
Query: 196 SMRRNVVVVEDEDLPTSSSTKSGCC 220
+ S KS CC
Sbjct: 200 DLHEQ-----------SQQNKSQCC 213
>sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1
Length = 215
Score = 157 bits (397), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 124/205 (60%), Gaps = 12/205 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 21 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 80
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT++++F + K WVKEL++ I + +AGNK DL +
Sbjct: 81 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 140
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRRG 195
R V E+A+ YA + TSAK + ++FL ++++ L K++ +L A+ SR
Sbjct: 141 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK-LPKSEPQNLGGAAGRSRGV 199
Query: 196 SMRRNVVVVEDEDLPTSSSTKSGCC 220
+ S KS CC
Sbjct: 200 DLHEQ-----------SQQNKSQCC 213
>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2
Length = 216
Score = 157 bits (396), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 123/205 (60%), Gaps = 12/205 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+ D+F + KNWVKEL++ +I + +AGNK DL +
Sbjct: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRRG 195
R V ++A+ YA + TSAK + E+F+ ++++ L K + G
Sbjct: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK---------LPKNEPQNAAG 192
Query: 196 SMRRNVVVVEDEDLPTSSSTKSGCC 220
+ R V E P S +S CC
Sbjct: 193 APGRTRGVDLQESNPAS---RSQCC 214
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1
Length = 215
Score = 157 bits (396), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 127/205 (61%), Gaps = 12/205 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 80
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+E+SF + KNWVKEL++ +I + ++GNK DL +
Sbjct: 81 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 140
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRRG 195
R V ++A+ YA + TSAK + + E+F+ +++++ + + A S RG
Sbjct: 141 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGAN----SARG 196
Query: 196 SMRRNVVVVEDEDLPTSSSTKSGCC 220
R V + E + +S CC
Sbjct: 197 ---RGVDLTE-----PAQPARSQCC 213
>sp|Q06AU6|RAB5A_PIG Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1
Length = 215
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 112/161 (69%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 80
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+E+SF + KNWVKEL++ +I + ++GNK DL +
Sbjct: 81 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 140
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R V ++A+ YA + TSAK + + E+F+ +++++
Sbjct: 141 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181
>sp|Q5ZHW4|RAB5B_CHICK Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1
Length = 215
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 123/205 (60%), Gaps = 12/205 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 21 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 80
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT++++F + K WVKEL++ I + +AGNK DL +
Sbjct: 81 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLASK 140
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRRG 195
R V E+A+ YA + TSAK + ++FL ++++ L K+ S G
Sbjct: 141 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK---------LPKSEPQSTSG 191
Query: 196 SMRRNVVVVEDEDLPTSSSTKSGCC 220
+ R+ V E + KS CC
Sbjct: 192 AAGRSRGVDLHEQ---TQQNKSQCC 213
>sp|Q9SN68|RAF2B_ARATH Ras-related protein RABF2b OS=Arabidopsis thaliana GN=RABF2B PE=1
SV=1
Length = 200
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 108/160 (67%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+VLLG+ GK+S+VLR+V+D+F E +T+ A+F ++ L + + IWDTAGQER
Sbjct: 12 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136
+H+L P+YYR + A++V+D+T++ SFE+ K WV+EL+ ++ + +AGNK DL R
Sbjct: 72 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 131
Query: 137 TVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
V EDA+ YAQ G TSAK ++E+F E+++R+
Sbjct: 132 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 171
>sp|P36017|VPS21_YEAST Vacuolar protein sorting-associated protein 21 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS21 PE=1
SV=1
Length = 210
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 112/176 (63%), Gaps = 3/176 (1%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
++S S K+VLLGE VGK+S+VLR+V + F E T+ A+FL +++ I + IW
Sbjct: 2 NTSVTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIW 61
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNK 129
DTAGQERF +L P+YYR + A++VYD+T SF K ++WVKEL + DI + + GNK
Sbjct: 62 DTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNK 121
Query: 130 IDLEK---QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
ID+ + +R V +E+ EK A+ G + F TSAK + ++FL + +++ K E
Sbjct: 122 IDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLKTAE 177
>sp|Q5KTJ6|RAB13_MESAU Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2
SV=1
Length = 203
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 109/165 (66%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK++L+G+ VGKT +++R+ ED FN +I+T+ F + + I GKR+ L +WDTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQE 68
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF + YYR + G +LVYDITDE SFE ++NW+K +K+ + + GNK D+E +
Sbjct: 69 RFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAK 128
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180
R V++E A+K A+ G F TSAK + ++E F L++ +L K+
Sbjct: 129 RKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDILLKS 173
>sp|P31582|RAF2A_ARATH Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1
SV=1
Length = 200
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 116/175 (66%), Gaps = 4/175 (2%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
MA+S ++N ++ K+VLLG+ GK+S+VLR+V+D+F E +T+ A+F ++ L +
Sbjct: 1 MASSGNKNINA----KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVND 56
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDI 121
+ IWDTAGQER+H+L P+YYR + A++V+DIT++ SFE+ K WV+EL+ ++
Sbjct: 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNM 116
Query: 122 CLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
+ +AGNK DL R V E+AE YAQ TSAK ++++F E+++R+
Sbjct: 117 VMALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRL 171
>sp|Q58DS5|RAB13_BOVIN Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1
Length = 203
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 109/165 (66%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK++L+G+ VGKT +++R+ ED FN +I+T+ F + ++I GK++ L +WDTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQE 68
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF + YYR + G +LVYDITDE SFE ++NW+K +K+ + + GNK D+E +
Sbjct: 69 RFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAK 128
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180
R V +E A+K A+ G F TSAK + ++E F L++ +L K+
Sbjct: 129 RKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKS 173
>sp|P31583|RHN1_NICPL Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2
SV=1
Length = 200
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 107/165 (64%), Gaps = 1/165 (0%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+VLLG+ GK+S+V+R+V+ +F E +T+ A+F + L + + IWDTAGQER
Sbjct: 12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQER 71
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136
+H+L P+YYR + A++VYDIT DSF + K WV+EL+K ++ + +AGNK DLE +R
Sbjct: 72 YHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRR 131
Query: 137 TVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
V E+A YA+ G TSAK + +F E+++R L +AQ
Sbjct: 132 KVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKR-LPRAQ 175
>sp|P51153|RAB13_HUMAN Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1
Length = 203
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 109/165 (66%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK++L+G+ VGKT +++R+ ED FN +I+T+ F + ++I GK++ L +WDTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQE 68
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF + YYR + G +LVYDITDE SFE ++NW+K +K+ + + GNK D+E +
Sbjct: 69 RFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAK 128
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180
R V +E A+K A+ G F TSAK + ++E F L++ +L K+
Sbjct: 129 RKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKS 173
>sp|P29687|RAB5_TOBAC Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1
Length = 200
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 116/204 (56%), Gaps = 16/204 (7%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+VLLG+ GK+S+V+R+V+ +F E +T+ A+F + +++ + IWDTAGQER
Sbjct: 12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVKFEIWDTAGQER 71
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136
+H+L P+YYR + A++VYDIT +S + K WV+EL+K ++ + +AGNK DLE +R
Sbjct: 72 YHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNKADLEDKR 131
Query: 137 TVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRRGS 196
V E+A YA+ G TSAK + ++F E+++R+ R
Sbjct: 132 KVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRL----------------PRAQ 175
Query: 197 MRRNVVVVEDEDLPTSSSTKSGCC 220
+N + ED P S + CC
Sbjct: 176 PAQNPAGMVLEDKPAQGSQAASCC 199
>sp|Q9DD03|RAB13_MOUSE Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=1 SV=1
Length = 202
Score = 147 bits (371), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 107/164 (65%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK++L+G+ VGKT +++R+ ED FN +I+T+ F + ++I GKR+ L +WDTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQE 68
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF + YYR + G +LVYDITDE SFE ++NW+K +K+ + + GNK D+E +
Sbjct: 69 RFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAK 128
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
R V +E AEK A+ F TSAK + ++E F L++ +L K
Sbjct: 129 RQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDILLK 172
>sp|P36019|YPT53_YEAST GTP-binding protein YPT53 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT53 PE=1 SV=1
Length = 220
Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 114/179 (63%), Gaps = 8/179 (4%)
Query: 6 LDRNSSS--TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKR 63
+D+++++ T + KVVLLGE VGK+S+VLR+V D F E T+ A+FL K++ GK
Sbjct: 1 MDKHTAAIPTLTIKVVLLGESAVGKSSIVLRFVSDDFKESKEPTIGAAFLTKRITRDGKV 60
Query: 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICL 123
+ IWDTAGQERF L P+YYR + A++V+D+T+E SF K +NWV+EL + +G+DI +
Sbjct: 61 IKFEIWDTAGQERFAPLAPMYYRNAQAALVVFDVTNEGSFYKAQNWVEELHEKVGHDIVI 120
Query: 124 TIAGNKIDL-----EKQRTVMQEDA-EKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
+ GNK+DL E + M+ A + + ++F SAK I ++F L +++
Sbjct: 121 ALVGNKMDLLNNDDENENRAMKAPAVQNLCERENLLYFEASAKTGENIYQIFQTLGEKV 179
>sp|P35286|RAB13_RAT Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2
Length = 203
Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 106/164 (64%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK++L+G+ VGKT +++R+ ED FN +I+T+ F + + I GKR+ L +WDTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQE 68
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF + YYR + G +LVYDITDE SFE ++NW+K +K+ + + GNK D+E +
Sbjct: 69 RFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAK 128
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
R V +E AE+ A+ F TSAK + ++E F L++ +L K
Sbjct: 129 RKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDILLK 172
>sp|P36018|YPT52_YEAST GTP-binding protein YPT52 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT52 PE=1 SV=1
Length = 234
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 123/208 (59%), Gaps = 35/208 (16%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLN--------LA 67
FK+VLLG+ VGK+S+V R+V+D F+E +T+ A+FL++ + I N
Sbjct: 4 FKLVLLGDSSVGKSSIVHRFVKDTFDELRESTIGAAFLSQSITIHPNDGNETKDVVIKFE 63
Query: 68 IWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIA 126
IWDTAGQER+ +L P+YYR +N A++VYDIT EDS +K +NWV ELK +G +D+ + +
Sbjct: 64 IWDTAGQERYKSLAPMYYRNANAALVVYDITQEDSLQKARNWVDELKNKVGDDDLVIYLL 123
Query: 127 GNKIDL--------------------EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIE 166
GNK+DL +K R + E+A++YAQ G + SAK G++
Sbjct: 124 GNKVDLCQETPSTETSPDSNEGGDEEQKVRAISTEEAKQYAQEQGLLFREVSAKTGEGVK 183
Query: 167 EMFLELSQRMLEKAQEFDLAKASELSRR 194
E+F ++ +++ +DL K LS++
Sbjct: 184 EIFQDIGEKL------YDLKKDEILSKQ 205
>sp|Q5F470|RAB8A_CHICK Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1
Length = 207
Score = 143 bits (361), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 98/161 (60%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++L+G+ VGKT + R+ ED FN I+T+ F + + + GKR+ L IWDTAG
Sbjct: 7 YLFKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAG 66
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR + G +LVYDIT+E SFE ++NWV+ +++ D+ I GNK D
Sbjct: 67 QERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDAN 126
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174
+R V +E EK A S G TSAK N IE F L++
Sbjct: 127 DKRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLAR 167
>sp|P70550|RAB8B_RAT Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1
Length = 207
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 104/166 (62%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++L+G+ VGKT ++ R+ ED FN I+T+ F + + + GK++ L IWDTAG
Sbjct: 7 YLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAG 66
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR + G +LVYDIT+E SF+ +KNW++ +++ +D+ I GNK D+
Sbjct: 67 QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMN 126
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+R V +E EK A G TSAK + +EE F L++ ++ K
Sbjct: 127 DKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTK 172
>sp|P61028|RAB8B_MOUSE Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1
Length = 207
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 104/166 (62%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++L+G+ VGKT ++ R+ ED FN I+T+ F + + + GK++ L IWDTAG
Sbjct: 7 YLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAG 66
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR + G +LVYDIT+E SF+ +KNW++ +++ +D+ I GNK D+
Sbjct: 67 QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMN 126
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+R V +E EK A G TSAK + +EE F L++ ++ K
Sbjct: 127 DKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTK 172
>sp|Q92930|RAB8B_HUMAN Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2
Length = 207
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 104/166 (62%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++L+G+ VGKT ++ R+ ED FN I+T+ F + + + GK++ L IWDTAG
Sbjct: 7 YLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAG 66
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR + G +LVYDIT+E SF+ +KNW++ +++ +D+ I GNK D+
Sbjct: 67 QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMN 126
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+R V +E EK A G TSAK + +EE F L++ ++ K
Sbjct: 127 DKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTK 172
>sp|Q5REC9|RAB8B_PONAB Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1
Length = 207
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 104/166 (62%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++L+G+ VGKT ++ R+ ED FN I+T+ F + + + GK++ L IWDTAG
Sbjct: 7 YLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAG 66
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR + G +LVYDIT+E SF+ +KNW++ +++ +D+ I GNK D+
Sbjct: 67 QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMN 126
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+R V +E EK A G TSAK + +EE F L++ ++ K
Sbjct: 127 DKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTK 172
>sp|P36586|YPT5_SCHPO GTP-binding protein ypt5 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt5 PE=1 SV=1
Length = 211
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 136/222 (61%), Gaps = 13/222 (5%)
Query: 1 MMANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNI- 59
M +N+ +N T + K+VLLG+ VGK+S+VLR+V+D+F++ +T+ A+FL + L I
Sbjct: 1 MASNTAPKNVV-TINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPID 59
Query: 60 AGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN 119
+ L IWDTAGQER+ +L P+YYR +N A++VYDIT S EK K+W+KEL++
Sbjct: 60 ENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPE 119
Query: 120 DICLTIAGNKIDL-EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
I + +AGNK+DL +++R V + DAE YA + F TSAK + E+F +++++
Sbjct: 120 GIVIALAGNKLDLAQERRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKL-- 177
Query: 179 KAQEFDLAKASELSRRGSMRRNVVVVEDEDLPTSSSTKSGCC 220
E L +A RG++ R V + E P + + S C
Sbjct: 178 -PLEDKLNQA-----RGAVNRGVNLSEAR--PAAQPSGSCSC 211
>sp|Q9CB01|RABF1_ARATH Ras-related protein RABF1 OS=Arabidopsis thaliana GN=RABF1 PE=1
SV=1
Length = 202
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 103/165 (62%), Gaps = 1/165 (0%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA-GKRLNLAIWDTAGQE 75
K+VLLG+ VGK+ +VLR+V +F+ T+ ASFL++ + + + IWDTAGQE
Sbjct: 35 KLVLLGDSGVGKSCIVLRFVRGQFDATSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+ AL P+YYR + AV+VYDIT +SF+K + WVKEL+K DI + + GNK DL ++
Sbjct: 95 RYSALAPLYYRGAGVAVIVYDITSPESFKKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180
R V ED + A+ G TSAK I ++F E+ +R+ A
Sbjct: 155 REVPTEDGMELAEKNGMFFIETSAKTADNINQLFEEIGKRLPRPA 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,211,395
Number of Sequences: 539616
Number of extensions: 2833448
Number of successful extensions: 12391
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 193
Number of HSP's that attempted gapping in prelim test: 10507
Number of HSP's gapped (non-prelim): 1214
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)