Query psy8722
Match_columns 223
No_of_seqs 149 out of 1831
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 17:35:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8722.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8722hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 8.9E-44 1.9E-48 257.1 19.7 174 10-183 4-178 (205)
2 KOG0092|consensus 100.0 7.3E-42 1.6E-46 246.3 18.2 173 13-185 3-175 (200)
3 KOG0087|consensus 100.0 4.5E-40 9.7E-45 240.3 21.3 181 10-190 9-189 (222)
4 KOG0080|consensus 100.0 2.1E-40 4.6E-45 231.4 17.9 171 10-180 6-177 (209)
5 KOG0094|consensus 100.0 2.6E-40 5.7E-45 238.4 18.5 171 11-181 18-189 (221)
6 KOG0098|consensus 100.0 2.8E-40 6.1E-45 236.4 18.1 177 12-188 3-179 (216)
7 KOG0078|consensus 100.0 8.6E-40 1.9E-44 239.8 20.7 176 10-185 7-182 (207)
8 KOG0088|consensus 100.0 5.8E-39 1.3E-43 223.8 14.8 209 11-221 9-217 (218)
9 PLN03110 Rab GTPase; Provision 100.0 3.1E-37 6.8E-42 237.2 23.6 175 8-182 5-179 (216)
10 KOG0394|consensus 100.0 1.3E-37 2.8E-42 222.4 18.1 172 11-182 5-183 (210)
11 cd04121 Rab40 Rab40 subfamily. 100.0 3.6E-37 7.7E-42 231.6 20.3 169 12-181 3-171 (189)
12 cd04120 Rab12 Rab12 subfamily. 100.0 1.2E-36 2.6E-41 230.8 22.0 164 16-179 1-165 (202)
13 cd04111 Rab39 Rab39 subfamily. 100.0 1.8E-36 3.9E-41 232.1 22.6 208 14-221 1-211 (211)
14 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3.1E-36 6.7E-41 229.5 23.1 168 16-183 1-174 (201)
15 KOG0079|consensus 100.0 1.8E-37 3.8E-42 214.0 13.9 169 11-180 4-172 (198)
16 KOG0091|consensus 100.0 4.6E-37 1E-41 215.3 14.1 184 13-196 6-192 (213)
17 KOG0086|consensus 100.0 9E-37 1.9E-41 211.7 15.2 180 11-190 5-184 (214)
18 PLN03108 Rab family protein; P 100.0 5.6E-35 1.2E-39 223.8 23.2 169 13-181 4-172 (210)
19 KOG0095|consensus 100.0 2.2E-36 4.7E-41 209.0 13.2 176 11-186 3-178 (213)
20 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 5.3E-35 1.2E-39 218.7 21.0 164 12-177 2-180 (182)
21 KOG0093|consensus 100.0 1.1E-35 2.3E-40 204.9 15.4 170 13-182 19-188 (193)
22 cd04122 Rab14 Rab14 subfamily. 100.0 7.6E-35 1.7E-39 215.3 21.2 164 15-178 2-165 (166)
23 cd04112 Rab26 Rab26 subfamily. 100.0 8.4E-35 1.8E-39 219.8 20.9 190 16-220 1-191 (191)
24 cd04133 Rop_like Rop subfamily 100.0 1.3E-34 2.9E-39 215.3 20.9 160 16-177 2-173 (176)
25 cd04110 Rab35 Rab35 subfamily. 100.0 3.7E-34 8E-39 217.6 23.3 170 12-182 3-172 (199)
26 cd01867 Rab8_Rab10_Rab13_like 100.0 1.8E-34 4E-39 213.5 20.7 166 13-178 1-166 (167)
27 cd04126 Rab20 Rab20 subfamily. 100.0 3.3E-34 7.2E-39 219.8 22.3 164 16-184 1-197 (220)
28 cd04131 Rnd Rnd subfamily. Th 100.0 2.1E-34 4.6E-39 215.0 20.3 161 15-177 1-176 (178)
29 cd04109 Rab28 Rab28 subfamily. 100.0 1.9E-34 4.2E-39 221.7 20.5 164 16-179 1-168 (215)
30 cd04125 RabA_like RabA-like su 100.0 5.1E-34 1.1E-38 215.1 22.0 165 16-180 1-165 (188)
31 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 5.5E-34 1.2E-38 219.8 21.9 166 13-180 11-191 (232)
32 cd04117 Rab15 Rab15 subfamily. 100.0 4.6E-34 9.9E-39 210.2 20.4 160 16-175 1-160 (161)
33 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 4.1E-34 8.9E-39 212.6 20.3 164 15-179 2-166 (172)
34 cd04127 Rab27A Rab27a subfamil 100.0 7E-34 1.5E-38 212.8 20.9 167 13-179 2-179 (180)
35 PF00071 Ras: Ras family; Int 100.0 9E-34 1.9E-38 208.6 20.8 161 17-177 1-161 (162)
36 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 8.1E-34 1.8E-38 209.8 20.6 163 15-177 2-164 (166)
37 PTZ00369 Ras-like protein; Pro 100.0 1.1E-33 2.5E-38 213.3 21.5 167 13-180 3-170 (189)
38 cd01875 RhoG RhoG subfamily. 100.0 9.9E-34 2.1E-38 213.9 20.8 163 14-178 2-178 (191)
39 cd01865 Rab3 Rab3 subfamily. 100.0 1.4E-33 3.1E-38 208.3 20.7 162 16-177 2-163 (165)
40 cd04144 Ras2 Ras2 subfamily. 100.0 1.4E-33 3.1E-38 213.0 20.4 165 17-182 1-168 (190)
41 KOG0097|consensus 100.0 5.2E-34 1.1E-38 195.7 15.8 177 11-187 7-183 (215)
42 cd01866 Rab2 Rab2 subfamily. 100.0 4.7E-33 1E-37 206.2 21.5 166 13-178 2-167 (168)
43 cd04119 RJL RJL (RabJ-Like) su 100.0 2.9E-33 6.4E-38 206.7 20.1 162 16-177 1-167 (168)
44 cd04128 Spg1 Spg1p. Spg1p (se 100.0 3.5E-33 7.5E-38 209.2 20.6 162 16-178 1-167 (182)
45 cd01868 Rab11_like Rab11-like. 100.0 4.8E-33 1E-37 205.4 20.8 163 14-176 2-164 (165)
46 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 4.4E-33 9.6E-38 213.7 20.8 165 15-181 1-180 (222)
47 cd01874 Cdc42 Cdc42 subfamily. 100.0 4.8E-33 1E-37 207.4 20.4 160 15-176 1-174 (175)
48 PLN03118 Rab family protein; P 100.0 2.4E-32 5.2E-37 209.5 24.2 172 8-180 7-180 (211)
49 cd01864 Rab19 Rab19 subfamily. 100.0 8.5E-33 1.8E-37 204.1 20.2 162 14-175 2-164 (165)
50 cd04113 Rab4 Rab4 subfamily. 100.0 8.3E-33 1.8E-37 203.3 19.8 160 16-175 1-160 (161)
51 cd04136 Rap_like Rap-like subf 100.0 7.1E-33 1.5E-37 203.9 19.4 161 15-176 1-162 (163)
52 PLN03071 GTP-binding nuclear p 100.0 1.6E-32 3.6E-37 211.2 21.7 164 13-179 11-174 (219)
53 cd04132 Rho4_like Rho4-like su 100.0 2.4E-32 5.1E-37 205.8 21.4 166 16-183 1-173 (187)
54 cd04175 Rap1 Rap1 subgroup. T 100.0 1.8E-32 4E-37 202.1 19.9 161 15-176 1-162 (164)
55 cd04118 Rab24 Rab24 subfamily. 100.0 5E-32 1.1E-36 205.0 21.9 164 16-180 1-169 (193)
56 cd00877 Ran Ran (Ras-related n 100.0 4.2E-32 9.1E-37 200.7 21.0 160 16-178 1-160 (166)
57 smart00175 RAB Rab subfamily o 100.0 3.4E-32 7.4E-37 200.4 20.3 163 16-178 1-163 (164)
58 cd04106 Rab23_lke Rab23-like s 100.0 2.3E-32 5E-37 201.0 19.2 159 16-175 1-161 (162)
59 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 4.9E-32 1.1E-36 201.0 20.9 162 17-178 2-166 (170)
60 cd04116 Rab9 Rab9 subfamily. 100.0 4.6E-32 1E-36 201.1 20.6 163 12-175 2-169 (170)
61 KOG0081|consensus 100.0 4.3E-34 9.3E-39 199.6 8.8 174 10-183 4-187 (219)
62 cd04176 Rap2 Rap2 subgroup. T 100.0 4.7E-32 1E-36 199.7 20.2 161 15-176 1-162 (163)
63 cd01871 Rac1_like Rac1-like su 100.0 6.7E-32 1.4E-36 201.0 20.1 159 15-175 1-173 (174)
64 cd01861 Rab6 Rab6 subfamily. 100.0 8.4E-32 1.8E-36 197.9 20.0 160 16-175 1-160 (161)
65 cd04124 RabL2 RabL2 subfamily. 100.0 1E-31 2.2E-36 197.6 20.3 160 16-179 1-160 (161)
66 cd04140 ARHI_like ARHI subfami 100.0 8.8E-32 1.9E-36 198.7 20.0 159 16-175 2-163 (165)
67 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.3E-31 2.8E-36 198.8 20.3 162 15-176 2-168 (170)
68 smart00173 RAS Ras subfamily o 100.0 1.2E-31 2.7E-36 197.6 19.9 161 16-177 1-162 (164)
69 cd01860 Rab5_related Rab5-rela 100.0 1.9E-31 4.2E-36 196.3 20.7 162 15-176 1-162 (163)
70 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.8E-31 3.9E-36 196.6 20.4 162 14-176 1-163 (164)
71 cd04134 Rho3 Rho3 subfamily. 100.0 1.2E-31 2.6E-36 202.2 19.4 161 16-178 1-175 (189)
72 cd04138 H_N_K_Ras_like H-Ras/N 100.0 2.4E-31 5.2E-36 195.3 20.2 160 15-176 1-161 (162)
73 cd04142 RRP22 RRP22 subfamily. 100.0 2.5E-31 5.4E-36 201.6 20.4 165 16-180 1-177 (198)
74 cd04101 RabL4 RabL4 (Rab-like4 100.0 3.1E-31 6.7E-36 195.4 19.4 160 16-176 1-163 (164)
75 smart00176 RAN Ran (Ras-relate 100.0 3E-31 6.4E-36 201.0 19.6 156 21-179 1-156 (200)
76 cd04123 Rab21 Rab21 subfamily. 100.0 5.9E-31 1.3E-35 193.2 20.5 161 16-176 1-161 (162)
77 cd01873 RhoBTB RhoBTB subfamil 100.0 3.4E-31 7.5E-36 200.2 19.6 158 15-175 2-194 (195)
78 cd01862 Rab7 Rab7 subfamily. 100.0 9.3E-31 2E-35 194.2 20.9 164 16-179 1-169 (172)
79 cd04177 RSR1 RSR1 subgroup. R 100.0 1.4E-30 3.1E-35 192.8 20.7 162 15-177 1-164 (168)
80 smart00174 RHO Rho (Ras homolo 100.0 9E-31 2E-35 194.8 19.2 158 18-177 1-172 (174)
81 cd04146 RERG_RasL11_like RERG/ 100.0 1.1E-30 2.3E-35 192.9 18.8 160 17-177 1-164 (165)
82 cd04114 Rab30 Rab30 subfamily. 100.0 3.3E-30 7.2E-35 190.8 21.1 165 12-176 4-168 (169)
83 cd04103 Centaurin_gamma Centau 100.0 1.7E-30 3.8E-35 190.3 19.2 153 16-175 1-157 (158)
84 cd01863 Rab18 Rab18 subfamily. 100.0 3E-30 6.5E-35 189.6 20.5 159 16-175 1-160 (161)
85 cd01892 Miro2 Miro2 subfamily. 100.0 1.3E-30 2.8E-35 193.3 18.5 163 13-177 2-166 (169)
86 cd04143 Rhes_like Rhes_like su 100.0 1.8E-30 3.9E-35 202.7 20.1 160 16-176 1-170 (247)
87 KOG0083|consensus 100.0 7.2E-33 1.6E-37 188.2 5.3 161 20-180 2-163 (192)
88 cd04135 Tc10 TC10 subfamily. 100.0 4.3E-30 9.4E-35 191.2 20.7 159 16-176 1-173 (174)
89 cd04130 Wrch_1 Wrch-1 subfamil 100.0 5.5E-30 1.2E-34 190.6 20.8 157 16-174 1-171 (173)
90 cd04148 RGK RGK subfamily. Th 100.0 3.5E-30 7.7E-35 198.6 20.0 166 16-183 1-169 (221)
91 cd00154 Rab Rab family. Rab G 100.0 5.9E-30 1.3E-34 186.8 18.9 158 16-173 1-158 (159)
92 cd04139 RalA_RalB RalA/RalB su 100.0 3.6E-29 7.7E-34 184.2 20.0 161 16-177 1-162 (164)
93 cd04147 Ras_dva Ras-dva subfam 100.0 6.8E-29 1.5E-33 188.6 19.9 163 17-180 1-166 (198)
94 cd01870 RhoA_like RhoA-like su 100.0 1.2E-28 2.7E-33 183.5 20.9 160 15-176 1-174 (175)
95 cd00876 Ras Ras family. The R 100.0 5E-29 1.1E-33 182.6 18.4 158 17-175 1-159 (160)
96 cd04129 Rho2 Rho2 subfamily. 100.0 1.6E-28 3.5E-33 184.9 19.9 163 15-179 1-175 (187)
97 KOG0395|consensus 100.0 7.7E-29 1.7E-33 186.5 17.5 165 14-179 2-167 (196)
98 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.8E-28 3.9E-33 184.0 18.7 170 14-186 2-179 (183)
99 cd04149 Arf6 Arf6 subfamily. 100.0 6.6E-29 1.4E-33 183.9 15.4 155 13-174 7-167 (168)
100 cd04137 RheB Rheb (Ras Homolog 100.0 4.5E-28 9.8E-33 181.3 19.7 163 16-179 2-165 (180)
101 PLN00223 ADP-ribosylation fact 100.0 2.1E-28 4.6E-33 183.2 17.3 160 13-179 15-180 (181)
102 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 2.2E-29 4.7E-34 185.8 11.7 153 17-174 1-163 (164)
103 cd00157 Rho Rho (Ras homology) 100.0 8.9E-28 1.9E-32 178.0 20.3 157 16-174 1-170 (171)
104 PTZ00132 GTP-binding nuclear p 100.0 1.1E-27 2.3E-32 184.3 21.3 167 10-179 4-170 (215)
105 cd04102 RabL3 RabL3 (Rab-like3 100.0 4.8E-28 1E-32 183.4 19.0 148 16-163 1-176 (202)
106 cd04158 ARD1 ARD1 subfamily. 100.0 4.6E-28 1E-32 179.6 17.6 156 17-179 1-163 (169)
107 KOG0393|consensus 100.0 6.3E-29 1.4E-33 183.3 12.2 167 13-181 2-183 (198)
108 smart00177 ARF ARF-like small 100.0 4.2E-28 9.1E-33 180.8 16.8 157 13-176 11-173 (175)
109 PTZ00133 ADP-ribosylation fact 100.0 7.4E-28 1.6E-32 180.5 16.9 161 13-180 15-181 (182)
110 cd04154 Arl2 Arl2 subfamily. 100.0 9.1E-28 2E-32 178.6 16.4 158 10-174 9-172 (173)
111 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.7E-28 3.8E-33 180.1 12.3 152 16-174 1-158 (159)
112 cd01893 Miro1 Miro1 subfamily. 100.0 2E-27 4.3E-32 175.7 17.7 160 16-178 1-165 (166)
113 KOG4252|consensus 100.0 5.1E-29 1.1E-33 177.5 5.0 172 10-182 15-186 (246)
114 PLN00023 GTP-binding protein; 100.0 1.8E-26 3.9E-31 183.1 19.6 142 11-152 17-189 (334)
115 cd04157 Arl6 Arl6 subfamily. 99.9 5.2E-27 1.1E-31 172.4 14.2 152 17-174 1-161 (162)
116 cd04161 Arl2l1_Arl13_like Arl2 99.9 2.5E-27 5.4E-32 175.3 12.0 151 17-174 1-166 (167)
117 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 2.4E-26 5.2E-31 171.2 16.1 155 13-174 13-173 (174)
118 PTZ00099 rab6; Provisional 99.9 7.2E-26 1.6E-30 168.4 18.4 141 38-178 3-143 (176)
119 cd00879 Sar1 Sar1 subfamily. 99.9 3.5E-26 7.6E-31 172.5 16.0 157 12-175 16-189 (190)
120 cd04156 ARLTS1 ARLTS1 subfamil 99.9 2.5E-26 5.4E-31 168.5 13.6 152 17-174 1-159 (160)
121 cd04160 Arfrp1 Arfrp1 subfamil 99.9 5.7E-26 1.2E-30 167.8 14.9 152 17-174 1-166 (167)
122 PF00025 Arf: ADP-ribosylation 99.9 3.5E-25 7.6E-30 164.9 17.7 160 10-176 9-175 (175)
123 cd04151 Arl1 Arl1 subfamily. 99.9 1.5E-25 3.2E-30 164.3 15.0 151 17-174 1-157 (158)
124 cd00878 Arf_Arl Arf (ADP-ribos 99.9 8.4E-26 1.8E-30 165.5 13.5 151 17-174 1-157 (158)
125 smart00178 SAR Sar1p-like memb 99.9 3.2E-25 7E-30 166.5 15.6 157 12-175 14-183 (184)
126 cd01897 NOG NOG1 is a nucleola 99.9 6.7E-25 1.5E-29 162.2 15.6 156 17-177 2-168 (168)
127 cd01890 LepA LepA subfamily. 99.9 7.6E-25 1.6E-29 163.6 15.1 154 17-176 2-176 (179)
128 TIGR00231 small_GTP small GTP- 99.9 2.9E-24 6.3E-29 156.3 17.3 158 15-173 1-160 (161)
129 cd01898 Obg Obg subfamily. Th 99.9 1.2E-24 2.5E-29 161.2 14.6 157 17-175 2-169 (170)
130 cd04159 Arl10_like Arl10-like 99.9 8.5E-25 1.8E-29 159.6 13.4 151 18-174 2-158 (159)
131 PRK15494 era GTPase Era; Provi 99.9 3.7E-25 8E-30 180.3 11.9 191 13-213 50-256 (339)
132 COG1100 GTPase SAR1 and relate 99.9 1.1E-23 2.4E-28 162.3 19.3 172 14-185 4-193 (219)
133 KOG0073|consensus 99.9 7.6E-24 1.7E-28 149.0 16.4 163 12-179 13-180 (185)
134 cd04155 Arl3 Arl3 subfamily. 99.9 4.4E-24 9.5E-29 158.6 16.0 156 9-174 8-172 (173)
135 TIGR00436 era GTP-binding prot 99.9 3.8E-25 8.3E-30 175.5 10.2 189 17-213 2-204 (270)
136 cd01878 HflX HflX subfamily. 99.9 2.6E-24 5.7E-29 164.1 13.5 158 13-176 39-204 (204)
137 cd04171 SelB SelB subfamily. 99.9 9.6E-24 2.1E-28 155.2 14.7 152 16-174 1-163 (164)
138 PRK12299 obgE GTPase CgtA; Rev 99.9 1.5E-23 3.2E-28 169.9 16.9 161 17-178 160-329 (335)
139 TIGR02528 EutP ethanolamine ut 99.9 5.5E-24 1.2E-28 153.2 10.2 134 17-173 2-141 (142)
140 KOG0070|consensus 99.9 3.2E-23 7E-28 149.5 13.3 162 10-178 12-179 (181)
141 cd00882 Ras_like_GTPase Ras-li 99.9 1.1E-22 2.3E-27 146.7 16.2 153 20-173 1-156 (157)
142 cd01879 FeoB Ferrous iron tran 99.9 1.2E-22 2.7E-27 148.4 15.3 147 20-175 1-155 (158)
143 PRK04213 GTP-binding protein; 99.9 1.5E-23 3.2E-28 159.6 10.3 154 12-178 6-193 (201)
144 TIGR03156 GTP_HflX GTP-binding 99.9 1.6E-22 3.5E-27 165.1 15.5 154 14-175 188-350 (351)
145 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.8E-22 3.8E-27 149.1 14.0 156 17-176 2-165 (168)
146 cd01891 TypA_BipA TypA (tyrosi 99.9 8.1E-23 1.8E-27 154.7 11.7 149 16-168 3-173 (194)
147 TIGR02729 Obg_CgtA Obg family 99.9 5E-22 1.1E-26 160.9 16.4 159 16-176 158-328 (329)
148 PF02421 FeoB_N: Ferrous iron 99.9 1.1E-22 2.5E-27 146.5 11.1 148 16-172 1-156 (156)
149 PF08477 Miro: Miro-like prote 99.9 4E-22 8.6E-27 139.2 13.0 114 17-131 1-119 (119)
150 TIGR00450 mnmE_trmE_thdF tRNA 99.9 7.9E-22 1.7E-26 165.4 16.9 154 13-180 201-363 (442)
151 COG1159 Era GTPase [General fu 99.9 8.5E-23 1.8E-27 158.2 10.2 195 13-213 4-212 (298)
152 cd01881 Obg_like The Obg-like 99.9 3E-22 6.5E-27 148.9 12.7 154 20-175 1-175 (176)
153 KOG1673|consensus 99.9 5.2E-22 1.1E-26 138.6 12.4 167 12-179 17-188 (205)
154 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.5E-21 3.2E-26 142.3 15.3 146 16-176 2-156 (157)
155 PRK00089 era GTPase Era; Revie 99.9 1.9E-22 4.1E-27 162.0 11.3 194 14-213 4-211 (292)
156 PRK03003 GTP-binding protein D 99.9 7.8E-22 1.7E-26 167.7 14.7 172 13-190 209-395 (472)
157 PRK05291 trmE tRNA modificatio 99.9 1.4E-21 2.9E-26 164.8 14.7 149 14-178 214-371 (449)
158 KOG0075|consensus 99.9 2.7E-22 5.8E-27 138.7 8.5 156 13-177 18-182 (186)
159 cd01889 SelB_euk SelB subfamil 99.9 8.5E-22 1.8E-26 148.9 12.0 160 16-179 1-188 (192)
160 KOG3883|consensus 99.9 6E-21 1.3E-25 133.0 15.1 172 11-182 5-180 (198)
161 TIGR01393 lepA GTP-binding pro 99.9 3E-21 6.4E-26 167.3 15.7 157 15-177 3-180 (595)
162 PRK12297 obgE GTPase CgtA; Rev 99.9 1.2E-20 2.7E-25 156.6 18.5 158 17-179 160-329 (424)
163 PRK11058 GTPase HflX; Provisio 99.9 4.3E-21 9.3E-26 160.2 15.8 157 16-178 198-363 (426)
164 cd01894 EngA1 EngA1 subfamily. 99.9 2.5E-21 5.4E-26 141.2 12.5 146 19-175 1-156 (157)
165 TIGR03594 GTPase_EngA ribosome 99.9 1.3E-20 2.8E-25 159.0 18.0 164 13-183 170-350 (429)
166 cd00881 GTP_translation_factor 99.9 4E-21 8.7E-26 144.4 12.7 154 17-176 1-186 (189)
167 TIGR00487 IF-2 translation ini 99.9 1.2E-20 2.6E-25 162.8 17.1 154 13-174 85-247 (587)
168 PRK15467 ethanolamine utilizat 99.9 4.2E-21 9E-26 140.6 12.2 141 17-179 3-149 (158)
169 PRK03003 GTP-binding protein D 99.9 8.5E-21 1.8E-25 161.4 15.6 154 14-178 37-200 (472)
170 PRK12298 obgE GTPase CgtA; Rev 99.9 1.3E-20 2.8E-25 155.6 14.9 184 17-202 161-362 (390)
171 cd01895 EngA2 EngA2 subfamily. 99.9 4.1E-20 9E-25 136.7 16.1 155 15-175 2-173 (174)
172 KOG0071|consensus 99.9 2.4E-20 5.3E-25 128.1 13.4 158 12-176 14-177 (180)
173 PRK12296 obgE GTPase CgtA; Rev 99.9 4E-20 8.8E-25 155.5 17.3 162 16-180 160-343 (500)
174 KOG4423|consensus 99.9 2.8E-23 6.1E-28 149.1 -1.7 168 13-180 23-197 (229)
175 TIGR00475 selB selenocysteine- 99.8 2.8E-20 6.1E-25 161.1 15.6 153 16-177 1-166 (581)
176 PRK00454 engB GTP-binding prot 99.8 2.4E-20 5.2E-25 141.2 12.9 163 8-177 17-194 (196)
177 TIGR00437 feoB ferrous iron tr 99.8 4.3E-20 9.3E-25 160.1 15.5 146 22-176 1-154 (591)
178 cd01888 eIF2_gamma eIF2-gamma 99.8 2.2E-20 4.9E-25 142.2 12.1 159 16-176 1-198 (203)
179 PRK05306 infB translation init 99.8 7.4E-20 1.6E-24 161.6 16.4 154 12-174 287-449 (787)
180 cd04163 Era Era subfamily. Er 99.8 8.3E-20 1.8E-24 134.1 14.1 155 15-175 3-167 (168)
181 CHL00189 infB translation init 99.8 5.8E-20 1.3E-24 160.9 15.2 156 13-175 242-408 (742)
182 cd04105 SR_beta Signal recogni 99.8 1.2E-19 2.6E-24 138.1 15.2 117 17-134 2-123 (203)
183 TIGR03598 GTPase_YsxC ribosome 99.8 4E-20 8.7E-25 138.2 11.9 148 12-166 15-179 (179)
184 KOG0096|consensus 99.8 3.1E-20 6.7E-25 134.0 10.0 164 13-179 8-171 (216)
185 PRK05433 GTP-binding protein L 99.8 1.6E-19 3.5E-24 156.7 15.2 160 13-178 5-185 (600)
186 PF00009 GTP_EFTU: Elongation 99.8 5.8E-20 1.3E-24 138.4 10.7 159 14-176 2-186 (188)
187 PRK00093 GTP-binding protein D 99.8 3.1E-19 6.7E-24 150.9 16.1 162 13-181 171-348 (435)
188 PRK00093 GTP-binding protein D 99.8 2.9E-19 6.3E-24 151.1 15.6 146 16-174 2-159 (435)
189 TIGR03594 GTPase_EngA ribosome 99.8 2.5E-19 5.4E-24 151.3 15.0 151 17-178 1-161 (429)
190 PRK09554 feoB ferrous iron tra 99.8 8.7E-19 1.9E-23 155.4 18.4 154 14-176 2-167 (772)
191 cd00880 Era_like Era (E. coli 99.8 3E-19 6.6E-24 129.8 12.4 151 20-175 1-162 (163)
192 PRK09518 bifunctional cytidyla 99.8 6.4E-19 1.4E-23 156.5 16.5 161 14-182 449-626 (712)
193 TIGR00483 EF-1_alpha translati 99.8 5.2E-19 1.1E-23 148.9 13.1 157 11-170 3-200 (426)
194 PRK12317 elongation factor 1-a 99.8 6.9E-19 1.5E-23 148.2 13.8 156 11-170 2-198 (425)
195 cd01896 DRG The developmentall 99.8 5E-18 1.1E-22 131.8 17.4 151 17-176 2-225 (233)
196 PRK09518 bifunctional cytidyla 99.8 2.8E-18 6.1E-23 152.4 16.8 155 13-178 273-437 (712)
197 TIGR00491 aIF-2 translation in 99.8 2.6E-18 5.7E-23 148.2 15.5 155 16-177 5-216 (590)
198 COG2229 Predicted GTPase [Gene 99.8 5.6E-18 1.2E-22 122.3 14.6 158 10-175 5-176 (187)
199 KOG0076|consensus 99.8 4.2E-19 9.1E-24 126.4 8.1 163 11-179 13-189 (197)
200 COG0486 ThdF Predicted GTPase 99.8 4.3E-18 9.3E-23 139.5 14.5 155 13-179 215-378 (454)
201 KOG0072|consensus 99.8 1.2E-19 2.5E-24 125.3 4.4 167 6-179 9-181 (182)
202 COG1160 Predicted GTPases [Gen 99.8 8.2E-18 1.8E-22 137.5 15.9 171 14-190 177-364 (444)
203 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.2E-18 4.8E-23 131.8 10.8 147 17-168 1-185 (208)
204 TIGR01394 TypA_BipA GTP-bindin 99.8 2.8E-18 6E-23 148.6 12.7 157 17-177 3-191 (594)
205 PRK10218 GTP-binding protein; 99.8 9.8E-18 2.1E-22 145.1 15.8 160 14-177 4-195 (607)
206 KOG0074|consensus 99.8 2.9E-18 6.3E-23 118.1 9.4 156 10-174 12-176 (185)
207 cd01876 YihA_EngB The YihA (En 99.8 6.2E-18 1.3E-22 124.4 11.8 150 17-175 1-169 (170)
208 PRK04004 translation initiatio 99.8 2.8E-17 6.1E-22 142.3 17.0 157 13-176 4-217 (586)
209 TIGR03680 eif2g_arch translati 99.8 4.5E-18 9.8E-23 142.1 11.3 162 13-176 2-195 (406)
210 COG1160 Predicted GTPases [Gen 99.8 8.5E-18 1.8E-22 137.4 12.1 151 16-177 4-165 (444)
211 PRK04000 translation initiatio 99.8 6.5E-18 1.4E-22 141.2 11.7 160 11-176 5-200 (411)
212 PRK10512 selenocysteinyl-tRNA- 99.8 2.3E-17 5.1E-22 143.5 15.3 153 16-176 1-165 (614)
213 KOG1423|consensus 99.8 4.5E-18 9.7E-23 131.8 9.2 197 12-213 69-311 (379)
214 cd04168 TetM_like Tet(M)-like 99.8 5.5E-17 1.2E-21 126.1 15.2 113 17-133 1-129 (237)
215 cd01884 EF_Tu EF-Tu subfamily. 99.8 3.8E-17 8.2E-22 123.4 13.9 147 14-166 1-172 (195)
216 cd01883 EF1_alpha Eukaryotic e 99.7 1.1E-17 2.4E-22 128.9 10.1 146 17-166 1-194 (219)
217 PRK12736 elongation factor Tu; 99.7 5.4E-17 1.2E-21 135.2 13.9 146 12-163 9-179 (394)
218 PF10662 PduV-EutP: Ethanolami 99.7 3E-17 6.4E-22 115.9 10.3 135 17-173 3-142 (143)
219 KOG1707|consensus 99.7 1E-17 2.2E-22 139.6 9.2 171 8-180 2-178 (625)
220 cd04167 Snu114p Snu114p subfam 99.7 4.1E-17 8.9E-22 125.3 11.5 113 17-133 2-136 (213)
221 COG2262 HflX GTPases [General 99.7 1.1E-16 2.3E-21 129.2 14.3 161 13-180 190-359 (411)
222 TIGR00485 EF-Tu translation el 99.7 9.7E-17 2.1E-21 133.8 13.5 148 10-163 7-179 (394)
223 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 3.3E-17 7.2E-22 125.8 9.4 165 17-183 1-182 (232)
224 COG0370 FeoB Fe2+ transport sy 99.7 4.2E-16 9E-21 133.0 15.8 155 14-177 2-164 (653)
225 PRK12735 elongation factor Tu; 99.7 2E-16 4.4E-21 131.8 13.7 150 9-164 6-180 (396)
226 cd04169 RF3 RF3 subfamily. Pe 99.7 4E-16 8.7E-21 123.3 13.9 116 16-135 3-138 (267)
227 COG1084 Predicted GTPase [Gene 99.7 3.2E-16 7E-21 123.0 12.4 160 14-179 167-338 (346)
228 cd01885 EF2 EF2 (for archaea a 99.7 2.5E-16 5.4E-21 121.0 11.2 113 17-133 2-138 (222)
229 CHL00071 tufA elongation facto 99.7 7.4E-16 1.6E-20 129.0 14.0 148 12-165 9-181 (409)
230 cd04165 GTPBP1_like GTPBP1-lik 99.7 1.5E-15 3.2E-20 117.1 14.5 151 17-173 1-219 (224)
231 COG0218 Predicted GTPase [Gene 99.7 9.1E-16 2E-20 113.2 12.5 160 11-178 20-198 (200)
232 cd04104 p47_IIGP_like p47 (47- 99.7 2.3E-15 5.1E-20 114.1 15.2 160 15-182 1-189 (197)
233 cd01850 CDC_Septin CDC/Septin. 99.7 1.3E-15 2.8E-20 120.9 13.1 142 15-160 4-185 (276)
234 PLN00043 elongation factor 1-a 99.7 5.5E-16 1.2E-20 130.6 11.5 150 12-167 4-203 (447)
235 KOG1489|consensus 99.7 2.5E-15 5.3E-20 117.3 13.7 155 17-175 198-365 (366)
236 COG0532 InfB Translation initi 99.7 3.3E-15 7.2E-20 124.2 14.5 159 14-179 4-172 (509)
237 PRK00741 prfC peptide chain re 99.6 4.6E-15 1E-19 127.1 14.8 118 12-133 7-144 (526)
238 PLN03126 Elongation factor Tu; 99.6 2.4E-15 5.1E-20 127.4 12.5 149 11-165 77-250 (478)
239 PRK00049 elongation factor Tu; 99.6 6.2E-15 1.3E-19 122.9 14.6 150 9-164 6-180 (396)
240 PRK05124 cysN sulfate adenylyl 99.6 1.5E-15 3.3E-20 128.9 11.0 153 12-169 24-217 (474)
241 PLN03127 Elongation factor Tu; 99.6 5E-15 1.1E-19 124.7 14.0 150 9-164 55-232 (447)
242 cd01886 EF-G Elongation factor 99.6 6.1E-15 1.3E-19 116.7 13.6 112 17-134 1-130 (270)
243 TIGR02034 CysN sulfate adenyly 99.6 2.2E-15 4.7E-20 126.0 11.3 148 16-168 1-188 (406)
244 cd04170 EF-G_bact Elongation f 99.6 3.5E-15 7.6E-20 118.4 11.8 140 17-164 1-160 (268)
245 PTZ00141 elongation factor 1- 99.6 4.5E-15 9.8E-20 125.2 12.8 152 11-167 3-203 (446)
246 KOG0462|consensus 99.6 5.3E-15 1.1E-19 122.7 12.8 164 13-180 58-238 (650)
247 COG1163 DRG Predicted GTPase [ 99.6 2.4E-14 5.3E-19 112.2 15.4 155 14-177 62-289 (365)
248 PRK13351 elongation factor G; 99.6 7E-15 1.5E-19 130.7 13.9 116 12-133 5-138 (687)
249 PF01926 MMR_HSR1: 50S ribosom 99.6 1.3E-14 2.7E-19 100.7 12.3 106 17-129 1-116 (116)
250 PRK05506 bifunctional sulfate 99.6 5.2E-15 1.1E-19 130.3 11.8 154 9-167 18-211 (632)
251 cd01899 Ygr210 Ygr210 subfamil 99.6 1.8E-14 3.9E-19 116.1 13.1 81 18-98 1-110 (318)
252 PTZ00327 eukaryotic translatio 99.6 8E-15 1.7E-19 123.4 11.0 163 12-176 31-232 (460)
253 KOG1191|consensus 99.6 6.4E-15 1.4E-19 121.0 8.8 167 12-181 265-454 (531)
254 COG0481 LepA Membrane GTPase L 99.6 1.2E-13 2.6E-18 113.1 14.9 161 13-179 7-188 (603)
255 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 1.5E-13 3.3E-18 104.1 14.5 159 16-178 1-185 (196)
256 PRK12739 elongation factor G; 99.6 1.2E-13 2.5E-18 122.8 16.0 117 11-133 4-138 (691)
257 TIGR00484 EF-G translation elo 99.6 1E-13 2.2E-18 123.2 15.0 134 10-151 5-156 (689)
258 PF09439 SRPRB: Signal recogni 99.6 1.5E-14 3.2E-19 106.7 8.1 118 15-136 3-128 (181)
259 TIGR00503 prfC peptide chain r 99.6 4.6E-14 9.9E-19 121.1 12.3 119 12-134 8-146 (527)
260 KOG1145|consensus 99.6 1.1E-13 2.5E-18 115.0 14.0 155 13-175 151-314 (683)
261 COG0536 Obg Predicted GTPase [ 99.6 1E-13 2.2E-18 109.6 12.9 163 17-181 161-337 (369)
262 KOG0077|consensus 99.5 1.4E-14 3E-19 102.7 7.0 155 13-174 18-190 (193)
263 KOG1490|consensus 99.5 2.2E-14 4.9E-19 117.9 9.1 173 13-188 166-352 (620)
264 COG3596 Predicted GTPase [Gene 99.5 4.2E-14 9.2E-19 108.7 9.0 161 12-177 36-222 (296)
265 PRK09602 translation-associate 99.5 1.7E-13 3.7E-18 113.7 12.2 83 16-98 2-113 (396)
266 COG5256 TEF1 Translation elong 99.5 1.3E-13 2.9E-18 111.4 10.6 155 11-168 3-202 (428)
267 KOG3905|consensus 99.5 7.1E-13 1.5E-17 104.0 13.2 164 13-179 50-292 (473)
268 PRK12740 elongation factor G; 99.5 3.7E-13 8E-18 119.5 12.9 107 21-133 1-125 (668)
269 PRK00007 elongation factor G; 99.5 1.3E-12 2.8E-17 116.1 14.7 134 11-152 6-157 (693)
270 TIGR00490 aEF-2 translation el 99.5 9.8E-14 2.1E-18 123.6 7.1 118 12-133 16-151 (720)
271 smart00010 small_GTPase Small 99.5 6.8E-13 1.5E-17 92.7 9.6 114 16-166 1-115 (124)
272 PF05783 DLIC: Dynein light in 99.4 3.3E-12 7.2E-17 107.5 14.9 166 11-179 21-266 (472)
273 PRK14845 translation initiatio 99.4 2.9E-12 6.3E-17 116.4 14.7 142 27-175 473-671 (1049)
274 PRK09866 hypothetical protein; 99.4 3.9E-12 8.5E-17 108.9 14.6 109 64-174 230-350 (741)
275 COG4917 EutP Ethanolamine util 99.4 3.5E-13 7.6E-18 91.3 6.2 136 17-174 3-143 (148)
276 COG1217 TypA Predicted membran 99.4 2.5E-12 5.4E-17 105.3 11.6 157 16-176 6-194 (603)
277 cd01853 Toc34_like Toc34-like 99.4 4.2E-12 9.1E-17 99.2 11.9 121 11-133 27-162 (249)
278 TIGR00991 3a0901s02IAP34 GTP-b 99.4 1.1E-11 2.3E-16 98.6 13.7 119 13-133 36-166 (313)
279 KOG1707|consensus 99.4 1.5E-11 3.2E-16 103.3 15.1 168 8-180 418-586 (625)
280 KOG0090|consensus 99.4 4.4E-12 9.5E-17 94.0 10.2 115 14-133 37-158 (238)
281 TIGR00157 ribosome small subun 99.4 2.6E-12 5.6E-17 100.4 9.3 96 75-174 24-120 (245)
282 cd00066 G-alpha G protein alph 99.4 2.2E-11 4.8E-16 98.7 14.4 118 63-180 160-314 (317)
283 PF04548 AIG1: AIG1 family; I 99.4 4.5E-12 9.7E-17 97.2 9.7 161 16-180 1-189 (212)
284 COG2895 CysN GTPases - Sulfate 99.4 1E-11 2.2E-16 98.6 11.6 150 13-167 4-193 (431)
285 TIGR00101 ureG urease accessor 99.3 2E-11 4.2E-16 92.5 12.1 103 64-177 92-196 (199)
286 smart00275 G_alpha G protein a 99.3 5.6E-11 1.2E-15 97.2 15.1 118 64-181 184-338 (342)
287 PTZ00258 GTP-binding protein; 99.3 2.7E-11 5.9E-16 99.8 13.1 86 13-98 19-126 (390)
288 PLN00116 translation elongatio 99.3 4.9E-12 1.1E-16 114.5 8.9 119 11-133 15-163 (843)
289 PTZ00416 elongation factor 2; 99.3 5.2E-12 1.1E-16 114.1 9.0 118 12-133 16-157 (836)
290 PRK07560 elongation factor EF- 99.3 6.8E-12 1.5E-16 112.2 9.1 118 12-133 17-152 (731)
291 PRK13768 GTPase; Provisional 99.3 1.2E-11 2.7E-16 97.1 9.3 109 65-176 98-246 (253)
292 KOG0458|consensus 99.3 7.4E-11 1.6E-15 99.1 11.9 159 6-168 168-373 (603)
293 KOG1144|consensus 99.3 3.6E-11 7.9E-16 103.3 10.2 166 13-182 473-692 (1064)
294 TIGR00073 hypB hydrogenase acc 99.3 7.4E-11 1.6E-15 90.1 11.1 150 13-175 20-205 (207)
295 PRK09601 GTP-binding protein Y 99.2 2.3E-10 5E-15 93.3 13.9 83 16-98 3-107 (364)
296 cd01882 BMS1 Bms1. Bms1 is an 99.2 1.5E-10 3.2E-15 89.6 11.4 143 11-165 35-184 (225)
297 TIGR02836 spore_IV_A stage IV 99.2 5.7E-10 1.2E-14 91.3 15.1 156 13-173 15-233 (492)
298 KOG3887|consensus 99.2 7.4E-11 1.6E-15 89.2 9.1 167 15-184 27-209 (347)
299 KOG3886|consensus 99.2 4.9E-11 1.1E-15 89.6 7.8 164 14-179 3-180 (295)
300 PF05049 IIGP: Interferon-indu 99.2 4.3E-11 9.3E-16 97.6 8.1 163 13-182 33-223 (376)
301 KOG0082|consensus 99.2 6.4E-10 1.4E-14 89.7 14.6 128 53-182 186-349 (354)
302 PRK09435 membrane ATPase/prote 99.2 3.5E-10 7.6E-15 91.6 11.4 103 64-177 149-260 (332)
303 KOG0461|consensus 99.2 5.5E-10 1.2E-14 88.7 12.1 162 13-178 5-194 (522)
304 PF03029 ATP_bind_1: Conserved 99.2 4.9E-12 1.1E-16 98.3 0.5 112 65-176 92-236 (238)
305 PF00735 Septin: Septin; Inte 99.2 3.3E-10 7.1E-15 90.1 10.9 138 15-157 4-181 (281)
306 COG0480 FusA Translation elong 99.2 5.3E-10 1.2E-14 98.3 13.0 118 12-134 7-142 (697)
307 COG0378 HypB Ni2+-binding GTPa 99.2 5.3E-10 1.1E-14 82.3 10.9 78 89-176 119-200 (202)
308 KOG0705|consensus 99.2 1.3E-10 2.9E-15 96.9 8.4 169 10-185 25-197 (749)
309 KOG1532|consensus 99.1 2.5E-09 5.4E-14 82.6 14.2 121 64-184 116-271 (366)
310 cd01900 YchF YchF subfamily. 99.1 5.3E-10 1.1E-14 88.3 10.9 81 18-98 1-103 (274)
311 PF00350 Dynamin_N: Dynamin fa 99.1 1.8E-10 3.9E-15 84.9 7.7 63 65-130 102-168 (168)
312 KOG0468|consensus 99.1 3.1E-10 6.7E-15 96.7 9.4 118 11-132 124-261 (971)
313 COG4108 PrfC Peptide chain rel 99.1 5.5E-10 1.2E-14 91.2 10.5 134 13-152 10-163 (528)
314 KOG0410|consensus 99.1 6.9E-11 1.5E-15 93.0 4.2 158 13-182 176-346 (410)
315 TIGR00993 3a0901s04IAP86 chlor 99.1 1.4E-09 3.1E-14 93.7 11.7 119 13-133 116-249 (763)
316 KOG1486|consensus 99.1 9.2E-09 2E-13 78.5 14.6 89 14-104 61-156 (364)
317 TIGR00750 lao LAO/AO transport 99.1 1.4E-09 3E-14 87.7 10.4 104 63-177 126-238 (300)
318 COG5257 GCD11 Translation init 99.1 4.3E-10 9.3E-15 88.5 6.8 165 13-179 8-204 (415)
319 COG0050 TufB GTPases - transla 99.0 1.1E-09 2.4E-14 85.3 8.6 167 10-183 7-199 (394)
320 COG3276 SelB Selenocysteine-sp 99.0 3.2E-09 6.9E-14 87.0 11.1 155 17-177 2-162 (447)
321 smart00053 DYNc Dynamin, GTPas 99.0 3.3E-09 7.2E-14 82.2 9.1 68 64-134 125-206 (240)
322 COG0012 Predicted GTPase, prob 99.0 4.8E-08 1E-12 79.0 14.8 85 15-99 2-109 (372)
323 PF00503 G-alpha: G-protein al 98.9 1.8E-08 3.9E-13 84.2 12.4 113 64-176 236-389 (389)
324 COG5019 CDC3 Septin family pro 98.9 1.5E-08 3.3E-13 81.4 10.4 138 14-156 22-200 (373)
325 COG1703 ArgK Putative periplas 98.9 3.7E-08 8E-13 77.2 11.5 106 64-180 144-257 (323)
326 PF03308 ArgK: ArgK protein; 98.9 2E-09 4.4E-14 83.0 4.5 155 13-179 27-232 (266)
327 PRK10463 hydrogenase nickel in 98.9 1.5E-08 3.3E-13 80.2 9.1 55 121-175 231-287 (290)
328 cd01855 YqeH YqeH. YqeH is an 98.8 2.1E-08 4.6E-13 75.5 8.0 93 77-176 24-124 (190)
329 PRK12289 GTPase RsgA; Reviewed 98.8 2.5E-08 5.3E-13 81.8 8.8 92 79-175 81-173 (352)
330 cd01854 YjeQ_engC YjeQ/EngC. 98.8 2.1E-08 4.6E-13 80.3 8.2 89 81-174 72-161 (287)
331 KOG1547|consensus 98.8 7.5E-08 1.6E-12 73.1 10.4 144 15-163 46-229 (336)
332 KOG2655|consensus 98.8 1.2E-07 2.7E-12 76.7 12.1 142 15-161 21-201 (366)
333 cd01859 MJ1464 MJ1464. This f 98.7 1.7E-08 3.7E-13 73.5 5.5 94 78-177 3-96 (156)
334 PRK00098 GTPase RsgA; Reviewed 98.7 4E-08 8.7E-13 79.2 7.8 87 84-174 77-164 (298)
335 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 3.3E-08 7.1E-13 70.9 6.3 53 17-74 85-138 (141)
336 PRK12288 GTPase RsgA; Reviewed 98.7 9.8E-08 2.1E-12 78.2 9.3 88 85-175 118-206 (347)
337 cd04178 Nucleostemin_like Nucl 98.7 5.4E-08 1.2E-12 72.0 5.9 56 13-73 115-171 (172)
338 cd01858 NGP_1 NGP-1. Autoanti 98.6 1.3E-07 2.9E-12 68.9 7.0 55 14-73 101-156 (157)
339 TIGR03348 VI_IcmF type VI secr 98.6 6.5E-07 1.4E-11 84.3 12.8 112 18-134 114-257 (1169)
340 COG5258 GTPBP1 GTPase [General 98.6 4.4E-07 9.6E-12 73.4 9.7 158 10-171 112-333 (527)
341 TIGR03597 GTPase_YqeH ribosome 98.6 1.9E-07 4.2E-12 77.2 7.7 95 74-175 50-151 (360)
342 KOG0460|consensus 98.6 2.9E-07 6.4E-12 73.3 8.2 148 11-163 50-224 (449)
343 cd01856 YlqF YlqF. Proteins o 98.6 2.1E-07 4.6E-12 68.9 6.8 57 13-74 113-170 (171)
344 cd01859 MJ1464 MJ1464. This f 98.5 2.8E-07 6.2E-12 67.1 7.1 57 13-73 99-155 (156)
345 KOG2486|consensus 98.5 1.7E-07 3.7E-12 72.7 5.8 154 12-174 133-313 (320)
346 cd01855 YqeH YqeH. YqeH is an 98.5 1.3E-07 2.9E-12 71.2 5.2 54 15-73 127-189 (190)
347 KOG0467|consensus 98.5 3E-07 6.6E-12 79.9 7.5 118 10-131 4-135 (887)
348 PRK09563 rbgA GTPase YlqF; Rev 98.5 4.2E-07 9E-12 72.9 7.2 58 13-75 119-177 (287)
349 TIGR00092 GTP-binding protein 98.5 6.2E-07 1.3E-11 73.5 8.1 83 16-98 3-108 (368)
350 KOG1954|consensus 98.5 1.3E-06 2.9E-11 70.4 9.4 121 13-136 56-227 (532)
351 TIGR03596 GTPase_YlqF ribosome 98.5 5.2E-07 1.1E-11 72.0 7.2 57 13-74 116-173 (276)
352 KOG1143|consensus 98.5 8.3E-07 1.8E-11 71.7 7.9 151 14-168 166-379 (591)
353 COG1161 Predicted GTPases [Gen 98.4 4.6E-07 9.9E-12 73.7 6.4 57 13-74 130-187 (322)
354 KOG0448|consensus 98.4 4.7E-06 1E-10 72.0 12.5 144 13-160 107-309 (749)
355 cd01849 YlqF_related_GTPase Yl 98.4 6.7E-07 1.5E-11 65.1 6.2 56 13-73 98-154 (155)
356 cd01849 YlqF_related_GTPase Yl 98.4 2.2E-06 4.7E-11 62.4 8.8 86 89-178 1-86 (155)
357 cd01851 GBP Guanylate-binding 98.4 4.8E-06 1E-10 64.3 10.9 89 13-101 5-105 (224)
358 cd01858 NGP_1 NGP-1. Autoanti 98.4 1.4E-06 2.9E-11 63.6 7.0 88 84-176 5-94 (157)
359 COG5192 BMS1 GTP-binding prote 98.4 3.2E-06 6.9E-11 71.8 9.9 138 11-161 65-210 (1077)
360 KOG0464|consensus 98.4 3.8E-07 8.3E-12 74.5 4.1 134 14-153 36-185 (753)
361 KOG0447|consensus 98.4 1.7E-05 3.7E-10 67.2 13.7 90 58-150 405-509 (980)
362 KOG0099|consensus 98.3 3.6E-06 7.8E-11 65.0 8.8 69 64-132 202-281 (379)
363 cd01856 YlqF YlqF. Proteins o 98.3 9.4E-07 2E-11 65.4 4.7 99 71-177 2-101 (171)
364 PF09547 Spore_IV_A: Stage IV 98.3 3.4E-05 7.3E-10 63.8 13.8 154 14-172 16-232 (492)
365 KOG1491|consensus 98.3 4E-06 8.8E-11 66.9 8.0 88 12-99 17-126 (391)
366 KOG0085|consensus 98.3 8.7E-07 1.9E-11 67.1 4.0 119 62-180 197-352 (359)
367 KOG4273|consensus 98.3 6.7E-06 1.4E-10 63.1 8.4 113 16-132 5-121 (418)
368 KOG0463|consensus 98.2 7.9E-06 1.7E-10 66.3 9.0 161 13-179 131-359 (641)
369 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 3.4E-06 7.5E-11 60.3 6.4 76 83-164 7-84 (141)
370 PF03193 DUF258: Protein of un 98.2 1.5E-06 3.3E-11 63.1 4.3 23 16-38 36-58 (161)
371 TIGR03596 GTPase_YlqF ribosome 98.2 4E-06 8.7E-11 66.9 6.8 101 71-179 4-105 (276)
372 COG1618 Predicted nucleotide k 98.2 0.0001 2.2E-09 53.1 12.9 147 13-176 3-175 (179)
373 PRK01889 GTPase RsgA; Reviewed 98.2 9.7E-06 2.1E-10 67.0 8.0 84 84-173 109-193 (356)
374 PRK12289 GTPase RsgA; Reviewed 98.1 3.8E-06 8.3E-11 69.0 5.5 22 17-38 174-195 (352)
375 PRK12288 GTPase RsgA; Reviewed 98.1 5.2E-06 1.1E-10 68.2 6.1 58 17-77 207-270 (347)
376 PRK10416 signal recognition pa 98.1 2E-05 4.4E-10 64.0 8.9 95 63-169 196-302 (318)
377 cd03112 CobW_like The function 98.1 1.6E-05 3.5E-10 58.0 7.5 21 18-38 3-23 (158)
378 PRK09563 rbgA GTPase YlqF; Rev 98.1 6.5E-06 1.4E-10 66.1 5.9 101 71-179 7-108 (287)
379 KOG1424|consensus 98.1 3.8E-06 8.3E-11 70.4 4.5 57 14-75 313-370 (562)
380 TIGR00157 ribosome small subun 98.1 7.8E-06 1.7E-10 64.1 6.0 23 16-38 121-143 (245)
381 COG3523 IcmF Type VI protein s 98.1 2.1E-05 4.6E-10 72.9 9.4 112 19-134 129-270 (1188)
382 KOG0465|consensus 98.1 1.2E-05 2.6E-10 68.8 7.1 118 13-134 37-170 (721)
383 TIGR03597 GTPase_YqeH ribosome 98.1 6.3E-06 1.4E-10 68.2 5.5 55 16-75 155-215 (360)
384 PRK13796 GTPase YqeH; Provisio 98.1 1.7E-05 3.6E-10 65.8 7.9 92 76-175 58-157 (365)
385 KOG1487|consensus 98.1 5.3E-05 1.2E-09 58.6 9.9 88 16-105 60-154 (358)
386 PRK13695 putative NTPase; Prov 98.1 0.00014 3.1E-09 53.8 12.1 79 85-176 94-172 (174)
387 PRK13796 GTPase YqeH; Provisio 98.0 9.1E-06 2E-10 67.4 5.7 56 15-75 160-221 (365)
388 KOG0466|consensus 98.0 2.5E-06 5.3E-11 67.3 1.6 114 65-180 126-244 (466)
389 KOG0459|consensus 98.0 9.7E-06 2.1E-10 66.2 4.8 159 10-170 74-279 (501)
390 PRK14974 cell division protein 98.0 2.7E-05 5.8E-10 63.6 7.3 95 64-170 223-323 (336)
391 TIGR00064 ftsY signal recognit 97.9 5.8E-05 1.3E-09 60.0 8.6 94 64-169 155-260 (272)
392 PF03266 NTPase_1: NTPase; In 97.9 3.6E-05 7.8E-10 56.7 6.1 138 17-165 1-163 (168)
393 cd01854 YjeQ_engC YjeQ/EngC. 97.8 5.2E-05 1.1E-09 60.8 6.6 24 16-39 162-185 (287)
394 COG1162 Predicted GTPases [Gen 97.8 4E-05 8.7E-10 60.9 5.7 21 17-37 166-186 (301)
395 PRK12727 flagellar biosynthesi 97.8 0.00067 1.5E-08 58.4 12.7 141 13-165 348-523 (559)
396 PRK00098 GTPase RsgA; Reviewed 97.8 5.7E-05 1.2E-09 61.0 5.9 24 16-39 165-188 (298)
397 PRK14722 flhF flagellar biosyn 97.8 0.00024 5.3E-09 58.7 9.4 140 14-159 136-316 (374)
398 KOG2484|consensus 97.8 3.2E-05 6.9E-10 63.1 4.2 63 7-74 244-307 (435)
399 cd03115 SRP The signal recogni 97.8 0.00023 4.9E-09 52.7 8.5 83 64-156 83-171 (173)
400 COG1162 Predicted GTPases [Gen 97.7 0.00032 7E-09 55.8 9.5 91 82-175 74-165 (301)
401 cd03114 ArgK-like The function 97.6 0.00021 4.4E-09 51.6 6.6 58 63-131 91-148 (148)
402 TIGR01425 SRP54_euk signal rec 97.6 0.0002 4.4E-09 60.2 7.4 65 63-133 182-252 (429)
403 COG3640 CooC CO dehydrogenase 97.6 0.00071 1.5E-08 51.8 9.2 47 83-132 151-197 (255)
404 KOG2485|consensus 97.6 0.00013 2.9E-09 57.9 5.4 61 12-74 140-206 (335)
405 PF06858 NOG1: Nucleolar GTP-b 97.6 0.00032 6.9E-09 41.4 5.6 45 86-131 12-58 (58)
406 cd02038 FleN-like FleN is a me 97.5 0.00041 8.9E-09 49.5 6.9 103 20-132 5-109 (139)
407 KOG3859|consensus 97.5 0.00024 5.1E-09 55.6 5.5 59 15-73 42-104 (406)
408 cd02042 ParA ParA and ParB of 97.5 0.00078 1.7E-08 45.3 7.1 82 18-111 2-84 (104)
409 KOG0469|consensus 97.5 0.00067 1.5E-08 57.3 8.0 116 13-132 17-162 (842)
410 KOG2423|consensus 97.4 4.1E-05 8.8E-10 62.6 0.8 88 8-102 300-389 (572)
411 cd01983 Fer4_NifH The Fer4_Nif 97.4 0.0013 2.8E-08 43.1 8.0 69 18-100 2-71 (99)
412 cd00009 AAA The AAA+ (ATPases 97.4 0.0009 1.9E-08 47.2 7.7 26 14-39 18-43 (151)
413 PRK10867 signal recognition pa 97.4 0.0011 2.3E-08 56.2 8.7 86 64-159 184-275 (433)
414 cd03111 CpaE_like This protein 97.4 0.0017 3.7E-08 44.0 8.3 103 18-129 2-106 (106)
415 PF11111 CENP-M: Centromere pr 97.4 0.021 4.4E-07 41.9 13.9 141 12-180 12-152 (176)
416 COG0523 Putative GTPases (G3E 97.4 0.006 1.3E-07 49.7 12.4 88 64-159 85-184 (323)
417 TIGR00959 ffh signal recogniti 97.3 0.0009 2E-08 56.5 7.6 86 64-159 183-274 (428)
418 PF13207 AAA_17: AAA domain; P 97.3 0.00023 4.9E-09 49.3 2.9 21 17-37 1-21 (121)
419 COG0563 Adk Adenylate kinase a 97.3 0.00023 5E-09 52.9 3.1 23 16-38 1-23 (178)
420 PRK08118 topology modulation p 97.3 0.00024 5.2E-09 52.4 3.1 21 17-37 3-23 (167)
421 PRK11537 putative GTP-binding 97.3 0.0066 1.4E-07 49.5 11.6 86 64-158 91-186 (318)
422 PRK05703 flhF flagellar biosyn 97.2 0.0056 1.2E-07 51.9 11.4 90 64-165 300-396 (424)
423 TIGR00150 HI0065_YjeE ATPase, 97.2 0.00097 2.1E-08 47.0 5.8 23 16-38 23-45 (133)
424 PRK12726 flagellar biosynthesi 97.2 0.0011 2.4E-08 54.8 6.8 86 64-159 286-377 (407)
425 PRK07261 topology modulation p 97.2 0.00029 6.3E-09 52.1 3.1 22 16-37 1-22 (171)
426 PF13555 AAA_29: P-loop contai 97.2 0.00039 8.4E-09 42.0 3.0 23 17-39 25-47 (62)
427 PF13671 AAA_33: AAA domain; P 97.2 0.00031 6.7E-09 50.0 2.8 19 18-36 2-20 (143)
428 COG1126 GlnQ ABC-type polar am 97.2 0.00043 9.4E-09 52.4 3.6 22 17-38 30-51 (240)
429 PRK12723 flagellar biosynthesi 97.2 0.0044 9.5E-08 51.8 9.9 91 63-165 254-351 (388)
430 COG1419 FlhF Flagellar GTP-bin 97.1 0.002 4.3E-08 53.4 7.4 137 13-159 201-373 (407)
431 PF13521 AAA_28: AAA domain; P 97.1 0.00035 7.6E-09 51.1 2.5 22 17-38 1-22 (163)
432 COG1136 SalX ABC-type antimicr 97.1 0.00044 9.5E-09 53.1 2.9 21 17-37 33-53 (226)
433 PF02367 UPF0079: Uncharacteri 97.1 0.0013 2.8E-08 45.7 4.8 22 16-37 16-37 (123)
434 COG1116 TauB ABC-type nitrate/ 97.0 0.0007 1.5E-08 52.3 3.6 22 17-38 31-52 (248)
435 cd02019 NK Nucleoside/nucleoti 97.0 0.00071 1.5E-08 42.0 2.9 21 18-38 2-22 (69)
436 PRK10646 ADP-binding protein; 97.0 0.0034 7.5E-08 45.3 6.8 22 17-38 30-51 (153)
437 cd03110 Fer4_NifH_child This p 97.0 0.0045 9.7E-08 46.0 7.6 86 62-156 91-176 (179)
438 COG0802 Predicted ATPase or ki 97.0 0.0026 5.7E-08 45.4 5.8 26 15-40 25-50 (149)
439 KOG1534|consensus 96.9 0.0019 4.1E-08 48.7 5.1 22 15-36 3-24 (273)
440 PRK00771 signal recognition pa 96.9 0.011 2.4E-07 50.2 10.1 86 64-159 176-267 (437)
441 PF00005 ABC_tran: ABC transpo 96.9 0.00084 1.8E-08 47.5 3.0 22 17-38 13-34 (137)
442 PF04665 Pox_A32: Poxvirus A32 96.9 0.00082 1.8E-08 52.2 3.1 26 12-37 10-35 (241)
443 COG3840 ThiQ ABC-type thiamine 96.9 0.0013 2.7E-08 48.7 3.6 25 17-41 27-51 (231)
444 TIGR00235 udk uridine kinase. 96.9 0.0013 2.8E-08 50.2 3.9 26 12-37 3-28 (207)
445 PRK06217 hypothetical protein; 96.9 0.00097 2.1E-08 49.9 3.1 23 16-38 2-24 (183)
446 KOG0780|consensus 96.9 0.017 3.8E-07 47.5 10.3 92 15-106 101-232 (483)
447 PRK10078 ribose 1,5-bisphospho 96.9 0.00099 2.1E-08 49.9 3.2 22 17-38 4-25 (186)
448 cd00071 GMPK Guanosine monopho 96.8 0.001 2.3E-08 47.3 3.0 20 18-37 2-21 (137)
449 COG3638 ABC-type phosphate/pho 96.8 0.00093 2E-08 51.3 2.8 21 17-37 32-52 (258)
450 smart00382 AAA ATPases associa 96.8 0.0014 3.1E-08 45.7 3.7 26 16-41 3-28 (148)
451 cd00820 PEPCK_HprK Phosphoenol 96.8 0.0011 2.4E-08 44.8 2.8 21 16-36 16-36 (107)
452 PF00004 AAA: ATPase family as 96.8 0.0011 2.5E-08 46.2 3.0 21 18-38 1-21 (132)
453 PF03205 MobB: Molybdopterin g 96.8 0.0012 2.5E-08 47.2 3.1 22 17-38 2-23 (140)
454 PF13238 AAA_18: AAA domain; P 96.8 0.0011 2.4E-08 46.0 2.8 21 18-38 1-21 (129)
455 COG1117 PstB ABC-type phosphat 96.8 0.0011 2.4E-08 50.2 2.8 22 15-36 33-54 (253)
456 PRK03839 putative kinase; Prov 96.8 0.0012 2.6E-08 49.1 3.1 21 17-37 2-22 (180)
457 cd02036 MinD Bacterial cell di 96.8 0.034 7.3E-07 41.0 10.9 84 65-155 64-147 (179)
458 PRK14738 gmk guanylate kinase; 96.8 0.0015 3.2E-08 49.9 3.5 25 13-37 11-35 (206)
459 PRK14530 adenylate kinase; Pro 96.8 0.0012 2.7E-08 50.6 3.1 21 16-36 4-24 (215)
460 cd03238 ABC_UvrA The excision 96.8 0.0013 2.9E-08 48.8 3.2 22 15-36 21-42 (176)
461 KOG3929|consensus 96.7 0.00038 8.3E-09 53.9 0.2 94 13-109 43-142 (363)
462 TIGR02322 phosphon_PhnN phosph 96.7 0.0013 2.9E-08 48.8 3.0 22 17-38 3-24 (179)
463 PRK05480 uridine/cytidine kina 96.7 0.0017 3.7E-08 49.5 3.6 26 13-38 4-29 (209)
464 cd03222 ABC_RNaseL_inhibitor T 96.7 0.002 4.2E-08 48.0 3.8 26 14-39 24-49 (177)
465 cd01131 PilT Pilus retraction 96.7 0.0046 9.9E-08 46.9 5.9 21 18-38 4-24 (198)
466 PRK13949 shikimate kinase; Pro 96.7 0.0016 3.5E-08 48.1 3.1 20 17-36 3-22 (169)
467 TIGR03263 guanyl_kin guanylate 96.7 0.0015 3.3E-08 48.5 3.0 21 17-37 3-23 (180)
468 PRK10751 molybdopterin-guanine 96.7 0.002 4.4E-08 47.5 3.6 25 14-38 5-29 (173)
469 cd01130 VirB11-like_ATPase Typ 96.7 0.0018 3.8E-08 48.6 3.3 24 15-38 25-48 (186)
470 COG1120 FepC ABC-type cobalami 96.7 0.0015 3.3E-08 51.2 3.0 21 17-37 30-50 (258)
471 PF07728 AAA_5: AAA domain (dy 96.7 0.0017 3.7E-08 46.1 3.0 21 17-37 1-21 (139)
472 PRK14532 adenylate kinase; Pro 96.7 0.0017 3.6E-08 48.7 3.1 21 16-36 1-21 (188)
473 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0016 3.5E-08 48.6 3.0 20 17-36 5-24 (188)
474 PRK01889 GTPase RsgA; Reviewed 96.6 0.0025 5.5E-08 52.7 4.3 23 16-38 196-218 (356)
475 cd02023 UMPK Uridine monophosp 96.6 0.0018 3.8E-08 49.0 3.1 21 18-38 2-22 (198)
476 COG0194 Gmk Guanylate kinase [ 96.6 0.0014 3E-08 48.5 2.3 25 15-39 4-28 (191)
477 PRK13851 type IV secretion sys 96.6 0.011 2.3E-07 48.7 7.7 25 14-38 161-185 (344)
478 COG3839 MalK ABC-type sugar tr 96.6 0.0022 4.8E-08 52.3 3.6 23 18-40 32-54 (338)
479 PF05621 TniB: Bacterial TniB 96.6 0.0089 1.9E-07 47.8 6.8 107 10-130 56-190 (302)
480 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.6 0.0027 5.9E-08 48.7 3.8 22 17-38 32-53 (218)
481 cd03225 ABC_cobalt_CbiO_domain 96.6 0.0029 6.2E-08 48.3 3.9 22 17-38 29-50 (211)
482 PRK14737 gmk guanylate kinase; 96.6 0.0021 4.5E-08 48.2 3.0 23 16-38 5-27 (186)
483 COG1121 ZnuC ABC-type Mn/Zn tr 96.6 0.002 4.3E-08 50.3 3.0 21 17-37 32-52 (254)
484 PRK14531 adenylate kinase; Pro 96.5 0.0023 5E-08 47.8 3.1 22 15-36 2-23 (183)
485 PRK00625 shikimate kinase; Pro 96.5 0.0023 5E-08 47.4 3.1 21 16-36 1-21 (173)
486 cd03226 ABC_cobalt_CbiO_domain 96.5 0.0031 6.6E-08 48.0 3.9 22 17-38 28-49 (205)
487 TIGR00960 3a0501s02 Type II (G 96.5 0.003 6.6E-08 48.4 3.9 22 17-38 31-52 (216)
488 TIGR01166 cbiO cobalt transpor 96.5 0.0032 6.8E-08 47.3 3.9 22 17-38 20-41 (190)
489 cd03261 ABC_Org_Solvent_Resist 96.5 0.003 6.6E-08 49.1 3.9 22 17-38 28-49 (235)
490 PRK08233 hypothetical protein; 96.5 0.0028 6E-08 47.0 3.5 23 15-37 3-25 (182)
491 PRK02496 adk adenylate kinase; 96.5 0.0026 5.7E-08 47.5 3.2 21 16-36 2-22 (184)
492 cd03216 ABC_Carb_Monos_I This 96.5 0.0036 7.9E-08 45.8 3.9 22 17-38 28-49 (163)
493 TIGR03608 L_ocin_972_ABC putat 96.5 0.0034 7.4E-08 47.7 3.9 22 17-38 26-47 (206)
494 cd01428 ADK Adenylate kinase ( 96.5 0.0021 4.6E-08 48.3 2.7 21 17-37 1-21 (194)
495 PRK13900 type IV secretion sys 96.5 0.0085 1.8E-07 49.1 6.4 24 14-37 159-182 (332)
496 PRK15177 Vi polysaccharide exp 96.5 0.0033 7.2E-08 48.2 3.8 24 16-39 14-37 (213)
497 TIGR02673 FtsE cell division A 96.5 0.0035 7.5E-08 48.0 3.9 22 17-38 30-51 (214)
498 cd03292 ABC_FtsE_transporter F 96.5 0.0035 7.5E-08 47.9 3.9 22 17-38 29-50 (214)
499 PTZ00088 adenylate kinase 1; P 96.5 0.0025 5.5E-08 49.4 3.1 21 16-36 7-27 (229)
500 cd02025 PanK Pantothenate kina 96.5 0.0023 5.1E-08 49.3 2.9 20 18-37 2-21 (220)
No 1
>KOG0084|consensus
Probab=100.00 E-value=8.9e-44 Score=257.15 Aligned_cols=174 Identities=37% Similarity=0.717 Sum_probs=167.7
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
....+.+||+|+|++|+|||+|+.||....|.+.+..|+|.++..+.+.++++.++++||||+||++|++....||++||
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah 83 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 83 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCc-EEEecCCCCCCHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEM 168 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~ 168 (223)
++|+|||+++.+||+.+..|+.+++++...++|.++||||+|+.+.+.++.++++.|+..++++ |+++||+++.|+.++
T Consensus 84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~ 163 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDA 163 (205)
T ss_pred eEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8722 169 FLELSQRMLEKAQEF 183 (223)
Q Consensus 169 ~~~i~~~~~~~~~~~ 183 (223)
|..|...+.++....
T Consensus 164 F~~la~~lk~~~~~~ 178 (205)
T KOG0084|consen 164 FLTLAKELKQRKGLH 178 (205)
T ss_pred HHHHHHHHHHhcccC
Confidence 999999998876554
No 2
>KOG0092|consensus
Probab=100.00 E-value=7.3e-42 Score=246.33 Aligned_cols=173 Identities=46% Similarity=0.794 Sum_probs=165.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
..++||+|+|..++|||||+.|+..+.|.+...+|+|..|....+.+++..+++.||||+|+++|+++.+.||++|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 46899999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
+|||+++.+||..++.|+.++.+..++++.+.++|||.||.+.+++..++++.++...++.|+++||+++.|+.++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 173 SQRMLEKAQEFDL 185 (223)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (223)
.+.+.....+...
T Consensus 163 a~~lp~~~~~~~~ 175 (200)
T KOG0092|consen 163 AEKLPCSDPQERQ 175 (200)
T ss_pred HHhccCccccccc
Confidence 9999877655443
No 3
>KOG0087|consensus
Probab=100.00 E-value=4.5e-40 Score=240.26 Aligned_cols=181 Identities=34% Similarity=0.640 Sum_probs=173.7
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
.+.++.+||+++|++++|||-|+.+|..+.|..+..+|+|.++..+.+.++++.++.+||||+|+++|+.....||+.+.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
++++|||++...+|+.+..|+.+++.+...++++++||||+||...+.+..++.+.++...+..|+++||.+..|+.++|
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF 168 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF 168 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy8722 170 LELSQRMLEKAQEFDLAKASE 190 (223)
Q Consensus 170 ~~i~~~~~~~~~~~~~~~~~~ 190 (223)
..++..++....+.......+
T Consensus 169 ~~~l~~I~~~vs~k~~~~~~~ 189 (222)
T KOG0087|consen 169 ERVLTEIYKIVSKKQLDENND 189 (222)
T ss_pred HHHHHHHHHHHHHHhhhcccc
Confidence 999999999988876666544
No 4
>KOG0080|consensus
Probab=100.00 E-value=2.1e-40 Score=231.44 Aligned_cols=171 Identities=43% Similarity=0.719 Sum_probs=162.1
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
+.+...+||++||.+|+|||||+.+|+.+.|.+....|+|.+|..+.+.+++..+++.||||+|+++|+.+.+.||+.|.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 55677899999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (223)
++|+|||++.+++|..+..|++++..... +++..++|+||+|.+.++.+..++...|+.++++-|+++||++.+|+...
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 99999999999999999999999998764 66778999999999989999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 169 FLELSQRMLEKA 180 (223)
Q Consensus 169 ~~~i~~~~~~~~ 180 (223)
|+.+++++++-.
T Consensus 166 FeelveKIi~tp 177 (209)
T KOG0080|consen 166 FEELVEKIIETP 177 (209)
T ss_pred HHHHHHHHhcCc
Confidence 999999998753
No 5
>KOG0094|consensus
Probab=100.00 E-value=2.6e-40 Score=238.38 Aligned_cols=171 Identities=36% Similarity=0.657 Sum_probs=161.6
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
.+-+.+||+++|+.++||||||+++..+.|...|.+|+|.+|...++.+.++++.+++|||+||++|+.+.+.|++++.+
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 34566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCC-CCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGN-DICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
+|+|||+++..||++..+|++.+....+. ++.+++||||.||.+.+++..++.+..++++++.|+++||+.|.||.++|
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLF 177 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHH
Confidence 99999999999999999999999998876 48889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 170 LELSQRMLEKAQ 181 (223)
Q Consensus 170 ~~i~~~~~~~~~ 181 (223)
..|..++.....
T Consensus 178 rrIaa~l~~~~~ 189 (221)
T KOG0094|consen 178 RRIAAALPGMEV 189 (221)
T ss_pred HHHHHhccCccc
Confidence 998877766544
No 6
>KOG0098|consensus
Probab=100.00 E-value=2.8e-40 Score=236.39 Aligned_cols=177 Identities=34% Similarity=0.661 Sum_probs=168.9
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
+.+.+|++++|+.|||||+|+.+|..+.|.+.+..|+|.++..+.+.++++.+++++|||+|++.|.+....||+.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|+|||+..+++|..+..|+..++++..+++.+++++||+||+..+.+..++.++|+.++|+.|+++||++++|+.|+|..
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy8722 172 LSQRMLEKAQEFDLAKA 188 (223)
Q Consensus 172 i~~~~~~~~~~~~~~~~ 188 (223)
+...+++.-++.-....
T Consensus 163 ta~~Iy~~~q~g~~~~~ 179 (216)
T KOG0098|consen 163 TAKEIYRKIQDGVFDDI 179 (216)
T ss_pred HHHHHHHHHHhcccccc
Confidence 99999998777544443
No 7
>KOG0078|consensus
Probab=100.00 E-value=8.6e-40 Score=239.79 Aligned_cols=176 Identities=43% Similarity=0.770 Sum_probs=169.2
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
.++.+.+||+++|+++||||+|+.+|..+.|...+..|+|.++..+.+..++..+.+++|||+|+++|.....+|++.|+
T Consensus 7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
++++|||+++..||+++..|+..+..+..+++|.++||||+|++..+++..+..+++|.++|++|+|+||++|.||+++|
T Consensus 87 gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF 166 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAF 166 (207)
T ss_pred eeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHH
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8722 170 LELSQRMLEKAQEFDL 185 (223)
Q Consensus 170 ~~i~~~~~~~~~~~~~ 185 (223)
-.+.+.++.+....+.
T Consensus 167 ~~La~~i~~k~~~~~~ 182 (207)
T KOG0078|consen 167 LSLARDILQKLEDAEL 182 (207)
T ss_pred HHHHHHHHhhcchhhh
Confidence 9999999986655533
No 8
>KOG0088|consensus
Probab=100.00 E-value=5.8e-39 Score=223.78 Aligned_cols=209 Identities=56% Similarity=0.903 Sum_probs=182.1
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
.....|||+++|..-+|||||+-++..+.|...+..|....|..+.+.+.+....+.||||+|+++|+.+.+.||+..++
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+++|||++|++||+.++.|..+++...+..+-+++|+||+||+.++.+..++++.++...|+.|+++||+++.||.++|+
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe 168 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFE 168 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccccceeeecCCCCCCCCCCCCcccc
Q psy8722 171 ELSQRMLEKAQEFDLAKASELSRRGSMRRNVVVVEDEDLPTSSSTKSGCCL 221 (223)
Q Consensus 171 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 221 (223)
.+...+++...+.+....+-... ++.-....-..|.+.|..++. ++||.
T Consensus 169 ~Lt~~MiE~~s~~qr~~~~~s~q-pp~t~r~~~~iD~e~~a~~sg-~~CC~ 217 (218)
T KOG0088|consen 169 SLTAKMIEHSSQRQRTRSPLSTQ-PPSTNRSIRLIDNEAEAERSG-KRCCR 217 (218)
T ss_pred HHHHHHHHHhhhcccccCCcCCC-CCCcccchhccCCCccccccc-CCccC
Confidence 99999999877665554333333 333333333444443444443 34886
No 9
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=3.1e-37 Score=237.18 Aligned_cols=175 Identities=34% Similarity=0.642 Sum_probs=160.0
Q ss_pred CCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q psy8722 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87 (223)
Q Consensus 8 ~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (223)
...+.++.+||+++|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.|||++|++.+...+..++++
T Consensus 5 ~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 84 (216)
T PLN03110 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84 (216)
T ss_pred cccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCC
Confidence 34456688999999999999999999999888888888999999988888899988999999999999999999999999
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHH
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEE 167 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (223)
++++|+|||++++.+|+.+..|+..+......++|+++|+||+|+...+.+..++...++...+++++++||+++.|+++
T Consensus 85 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 85 AVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEK 164 (216)
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999999999887777899999999999987777888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8722 168 MFLELSQRMLEKAQE 182 (223)
Q Consensus 168 ~~~~i~~~~~~~~~~ 182 (223)
+|++++..+.+....
T Consensus 165 lf~~l~~~i~~~~~~ 179 (216)
T PLN03110 165 AFQTILLEIYHIISK 179 (216)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999886544
No 10
>KOG0394|consensus
Probab=100.00 E-value=1.3e-37 Score=222.38 Aligned_cols=172 Identities=38% Similarity=0.669 Sum_probs=159.3
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
....-+||+++|++|+|||||++++++..|..++..|+|.++..+.+.++++.+.++||||+|+++|.++...+++.+|.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCccc--cccCCHHHHHHHHHHhC-CcEEEecCCCCC
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDLEK--QRTVMQEDAEKYAQSVG-AVHFHTSAKMNR 163 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 163 (223)
+++|||++++.||+.+..|..++-.... ...|++|+|||+|+.+ .++++...++++|...| +||||+||+...
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 9999999999999999999999887664 4578999999999965 38899999999998876 699999999999
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 164 ~i~~~~~~i~~~~~~~~~~ 182 (223)
||+++|..+...++.....
T Consensus 165 NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANEDR 183 (210)
T ss_pred cHHHHHHHHHHHHHhccch
Confidence 9999999999998877543
No 11
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=3.6e-37 Score=231.61 Aligned_cols=169 Identities=30% Similarity=0.516 Sum_probs=155.6
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.++.+||+++|..|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.|..++..+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999998888888888888888878888899999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|+|||++++.+|+.+..|+..+.... ++.|++||+||.|+...+.+..++++++++.++++|+++||++|.||+++|++
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999997765 57999999999999888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 172 LSQRMLEKAQ 181 (223)
Q Consensus 172 i~~~~~~~~~ 181 (223)
|++.+..+..
T Consensus 162 l~~~i~~~~~ 171 (189)
T cd04121 162 LARIVLMRHG 171 (189)
T ss_pred HHHHHHHhcC
Confidence 9998875543
No 12
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.2e-36 Score=230.80 Aligned_cols=164 Identities=38% Similarity=0.724 Sum_probs=152.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+.|+++|..|||||||+++|..+.|...+.+|.+.++....+.+++..+.+.+|||+|+++|..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999998888899999998888889998999999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHh-CCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV-GAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
|++++.||+.+..|+..+......++|+++|+||+|+...+++..++..++++.+ ++.|+++||++|.|++++|.++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999988776678999999999999888888888999999875 789999999999999999999999
Q ss_pred HHHHH
Q psy8722 175 RMLEK 179 (223)
Q Consensus 175 ~~~~~ 179 (223)
.+...
T Consensus 161 ~~~~~ 165 (202)
T cd04120 161 DILKK 165 (202)
T ss_pred HHHHh
Confidence 88654
No 13
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.8e-36 Score=232.08 Aligned_cols=208 Identities=35% Similarity=0.636 Sum_probs=180.3
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNI-AGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
+++||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+|||+|++.+...+..+++++|+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 4689999999999999999999988888888889988888777776 466789999999999999988899999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
+|||++++.+|+.+..|+..+..... ...|+++|+||.|+...+.+..++..++++.++++++++||+++.|++++|++
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999877654 45788999999999877788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhc-cccccceeeecCCCCCCCCCCCCcccc
Q psy8722 172 LSQRMLEKAQEFDLAKASELSRR-GSMRRNVVVVEDEDLPTSSSTKSGCCL 221 (223)
Q Consensus 172 i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~cc~ 221 (223)
|++.+.+.....+......|.+. ...+.+..-++.+..|+.+++...|||
T Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
T cd04111 161 LTQEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEERSPTFASPEKSCCC 211 (211)
T ss_pred HHHHHHHHhhcCCCCccccccccccCCCcccccccCcccccccCCCCCCCC
Confidence 99999888766654554445333 456666777777888999999888986
No 14
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.1e-36 Score=229.46 Aligned_cols=168 Identities=33% Similarity=0.558 Sum_probs=151.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA-GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
+||+++|++|||||||+++|....+...+.+|.+.++....+.++ +..+.+.+|||+|++.+..++..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 689999999999999999999988888888999988877777777 7789999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHc----CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC-CcEEEecCCCCCCHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKML----GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG-AVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~ 169 (223)
||++++.+|+.+..|+..+.... ..++|+++|+||.|+...+.+..+++.+++...+ ..++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999999887642 2568999999999997667778899999999999 589999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy8722 170 LELSQRMLEKAQEF 183 (223)
Q Consensus 170 ~~i~~~~~~~~~~~ 183 (223)
++|++.+....+..
T Consensus 161 ~~l~~~l~~~~~~~ 174 (201)
T cd04107 161 RFLVKNILANDKNL 174 (201)
T ss_pred HHHHHHHHHhchhh
Confidence 99999987664443
No 15
>KOG0079|consensus
Probab=100.00 E-value=1.8e-37 Score=213.97 Aligned_cols=169 Identities=38% Similarity=0.693 Sum_probs=161.4
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+..+-++.+++|++|+|||+|+.+|..+.|..+|..|+|.++..+++.++|..++++|||++|++.|+.+...|++..++
T Consensus 4 ~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg 83 (198)
T KOG0079|consen 4 DYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG 83 (198)
T ss_pred cHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+++|||+++.+||.++.+|+++++..+. .+|-++||||.|..+.+.+..+++..++...|+.+|++|++++.|+...|.
T Consensus 84 v~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 84 VIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFH 162 (198)
T ss_pred EEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHH
Confidence 9999999999999999999999999875 689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 171 ELSQRMLEKA 180 (223)
Q Consensus 171 ~i~~~~~~~~ 180 (223)
-|.++++...
T Consensus 163 cit~qvl~~k 172 (198)
T KOG0079|consen 163 CITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHH
Confidence 9999988776
No 16
>KOG0091|consensus
Probab=100.00 E-value=4.6e-37 Score=215.31 Aligned_cols=184 Identities=39% Similarity=0.636 Sum_probs=167.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNI-AGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.+++++++||++-+|||+|++.++.+.+.+-..||.|.++..+.+.+ +|..+++++|||+|+++|++....|+++.-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 47899999999999999999999999999999999999998887766 57778999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcC-CC-CeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLG-ND-ICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~-~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
++|||+++..||+.+..|+.+...+.+ +. +-+++||+|+||...++++.+++++++..+|+.|+|+|+++|.|++++|
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF 165 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF 165 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence 999999999999999999999887765 44 4468889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccc
Q psy8722 170 LELSQRMLEKAQEFDLAKASELSRRGS 196 (223)
Q Consensus 170 ~~i~~~~~~~~~~~~~~~~~~~~~~~~ 196 (223)
..+.+.+.....+.+.+....|-...+
T Consensus 166 ~mlaqeIf~~i~qGeik~edgw~gvKS 192 (213)
T KOG0091|consen 166 DMLAQEIFQAIQQGEIKLEDGWGGVKS 192 (213)
T ss_pred HHHHHHHHHHHhcCceeeeeccccccc
Confidence 999999999988877776665655444
No 17
>KOG0086|consensus
Probab=100.00 E-value=9e-37 Score=211.68 Aligned_cols=180 Identities=34% Similarity=0.638 Sum_probs=170.1
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
.+++-+|++++|+.|+|||+|+++|..+.+......|+|.+|..+.+.+.++.++++||||+|+++|++....|++.|.+
T Consensus 5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG 84 (214)
T KOG0086|consen 5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 84 (214)
T ss_pred hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+++|||++++++|+.+..|+...+....+++-+++++||.||+..+++...++.+|+++..+.++++|+.+|+|+.++|-
T Consensus 85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl 164 (214)
T KOG0086|consen 85 ALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL 164 (214)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q psy8722 171 ELSQRMLEKAQEFDLAKASE 190 (223)
Q Consensus 171 ~i~~~~~~~~~~~~~~~~~~ 190 (223)
.....++.+-+..+.++...
T Consensus 165 ~c~~tIl~kIE~GElDPer~ 184 (214)
T KOG0086|consen 165 KCARTILNKIESGELDPERM 184 (214)
T ss_pred HHHHHHHHHHhhcCCCHHHc
Confidence 99999988877766655433
No 18
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=5.6e-35 Score=223.77 Aligned_cols=169 Identities=33% Similarity=0.681 Sum_probs=154.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+|||+|++.+...+..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999988888888889998888888888888889999999999999888888999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
+|||++++.++..+..|+..+.......+|+++++||.|+...+.+..++..++++.++++++++||+++.|++++|.++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999998877766779999999999998877888899999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy8722 173 SQRMLEKAQ 181 (223)
Q Consensus 173 ~~~~~~~~~ 181 (223)
++.+++...
T Consensus 164 ~~~~~~~~~ 172 (210)
T PLN03108 164 AAKIYKKIQ 172 (210)
T ss_pred HHHHHHHhh
Confidence 999876543
No 19
>KOG0095|consensus
Probab=100.00 E-value=2.2e-36 Score=209.03 Aligned_cols=176 Identities=35% Similarity=0.663 Sum_probs=166.0
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+++.-+||+++|..|+|||+|+++|+.+-|++....|+|.++..+++.+++.+++++||||+|+++|++....|++.||+
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++...+|+-+.+|+.++....+..+--|+|+||+|+.+.++++.+..++|+......|+++||++-+|++.+|.
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 99999999999999999999999999888888899999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy8722 171 ELSQRMLEKAQEFDLA 186 (223)
Q Consensus 171 ~i~~~~~~~~~~~~~~ 186 (223)
.+...+.......+..
T Consensus 163 ~~a~rli~~ar~~d~v 178 (213)
T KOG0095|consen 163 DLACRLISEARQNDLV 178 (213)
T ss_pred HHHHHHHHHHHhccch
Confidence 9999888776665543
No 20
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=5.3e-35 Score=218.74 Aligned_cols=164 Identities=23% Similarity=0.494 Sum_probs=148.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.+..+||+++|++|+|||||++++..+.+...+.+|.+..+. ..+.+++..+.+.+|||+|++.|..++..+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 467899999999999999999999999999888899887664 5677889899999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCccc------------cccCCHHHHHHHHHHhCC-cEEEe
Q psy8722 92 VLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEK------------QRTVMQEDAEKYAQSVGA-VHFHT 157 (223)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 157 (223)
|+|||++++.||+.+ ..|+..+.... ++.|++||+||+|+.. .+.+..++++++++.+++ +|+||
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 999999999999997 78999998865 5689999999999854 346889999999999996 89999
Q ss_pred cCCCCCC-HHHHHHHHHHHHH
Q psy8722 158 SAKMNRG-IEEMFLELSQRML 177 (223)
Q Consensus 158 Sa~~~~~-i~~~~~~i~~~~~ 177 (223)
||+++.| |+++|..+++.++
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999998654
No 21
>KOG0093|consensus
Probab=100.00 E-value=1.1e-35 Score=204.90 Aligned_cols=170 Identities=36% Similarity=0.683 Sum_probs=161.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+-+|++++|+..+|||||+.++.+..|...+..|.|.++..+++.-....+.+++|||.|++.|+.....++++++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 56779999999999999999999999999999999999999998887888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
++||+.+.+||..++.|...+....-.+.|+|+++||+|+++++.++.+....++..+|+.|||+||+.+.|+..+|+.+
T Consensus 99 LmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~l 178 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERL 178 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHH
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 173 SQRMLEKAQE 182 (223)
Q Consensus 173 ~~~~~~~~~~ 182 (223)
...+-..+.+
T Consensus 179 v~~Ic~kmse 188 (193)
T KOG0093|consen 179 VDIICDKMSE 188 (193)
T ss_pred HHHHHHHhhh
Confidence 9888776554
No 22
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=7.6e-35 Score=215.32 Aligned_cols=164 Identities=34% Similarity=0.669 Sum_probs=151.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
.+||+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999888888888888888888888888889999999999999999899999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
||++++.+|+.+..|+..+.....++.|+++|+||+|+...+.+..+++.+++...+++++++||++|.|+.++|.+++.
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999988776677999999999999888888889999999999999999999999999999999998
Q ss_pred HHHH
Q psy8722 175 RMLE 178 (223)
Q Consensus 175 ~~~~ 178 (223)
.+++
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 8754
No 23
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=8.4e-35 Score=219.85 Aligned_cols=190 Identities=34% Similarity=0.640 Sum_probs=160.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCC-CCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNE-KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
+||+++|++|+|||||+++|....+.. .+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999877754 5677888888777788888889999999999999988888899999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
||++++.+++.+..|+..+......++|+++++||.|+...+.+..++...++..++.+++++||++|.|++++|.+|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998877668999999999999776777788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhccccccceeeecCCCCCCCCCCCCccc
Q psy8722 175 RMLEKAQEFDLAKASELSRRGSMRRNVVVVEDEDLPTSSSTKSGCC 220 (223)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 220 (223)
.+.....++ +....-.+.. ..++.++++.||
T Consensus 161 ~~~~~~~~~------------~~~~~~~~~~---~~~~~~~~~~~~ 191 (191)
T cd04112 161 ELKHRKYEQ------------PDEGKFKISD---YVTKQKKISRCC 191 (191)
T ss_pred HHHHhcccc------------CCCCcEEecc---ccCcccccCCCC
Confidence 887653222 1111112222 334778899999
No 24
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.3e-34 Score=215.34 Aligned_cols=160 Identities=31% Similarity=0.621 Sum_probs=144.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||+|+.++..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.|..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6999999999999999999999999988899998766 445678888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCccccc----------cCCHHHHHHHHHHhCC-cEEEecCCCCC
Q psy8722 96 DITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEKQR----------TVMQEDAEKYAQSVGA-VHFHTSAKMNR 163 (223)
Q Consensus 96 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 163 (223)
|++++.||+.+ ..|+..+.... ++.|++|||||+|+.+.+ .+..+++.+++...+. .|+|+||+++.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999998765 479999999999996543 4788999999999998 59999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRML 177 (223)
Q Consensus 164 ~i~~~~~~i~~~~~ 177 (223)
||+++|+.+++.++
T Consensus 160 nV~~~F~~~~~~~~ 173 (176)
T cd04133 160 NVKAVFDAAIKVVL 173 (176)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998763
No 25
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=3.7e-34 Score=217.63 Aligned_cols=170 Identities=39% Similarity=0.717 Sum_probs=153.4
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
+++.+||+|+|++|+|||||+++|.+..+...+.+|.+.++....+.+++..+.+.+||+||++.+...+..++++++++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 45689999999999999999999999888888889998888778888888888999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
++|||++++.+|+.+..|+..+.... +..|+++|+||+|+.....+..++..+++...+.+++++||+++.|++++|++
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 99999999999999999999987754 46899999999999777677778888899889999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 172 LSQRMLEKAQE 182 (223)
Q Consensus 172 i~~~~~~~~~~ 182 (223)
|...++.....
T Consensus 162 l~~~~~~~~~~ 172 (199)
T cd04110 162 ITELVLRAKKD 172 (199)
T ss_pred HHHHHHHhhhc
Confidence 99999866443
No 26
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1.8e-34 Score=213.49 Aligned_cols=166 Identities=41% Similarity=0.766 Sum_probs=152.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
++.+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|+++
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 35799999999999999999999999999988999998887778888888899999999999999888888999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
+|||++++.+|..+..|+..+......+.|+++++||.|+.+.+.+..++...++..++.+++++||+++.|++++|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988766779999999999998777777888889999999999999999999999999999
Q ss_pred HHHHHH
Q psy8722 173 SQRMLE 178 (223)
Q Consensus 173 ~~~~~~ 178 (223)
.+++..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 998864
No 27
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=3.3e-34 Score=219.80 Aligned_cols=164 Identities=36% Similarity=0.617 Sum_probs=142.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|.+|+|||||+++|..+.+.. +.+|.+.++....+ ..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999888864 56787776644332 4578999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc-------------------cccCCHHHHHHHHHHhC-----
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK-------------------QRTVMQEDAEKYAQSVG----- 151 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~----- 151 (223)
|++++.+|+.+..|+..+......+.|+++|+||+|+.. .+.+..+++++++.+.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999988877766556789999999999965 57788899999999876
Q ss_pred ---------CcEEEecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy8722 152 ---------AVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFD 184 (223)
Q Consensus 152 ---------~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~ 184 (223)
++|+++||++|.||+++|..+++.+++...+..
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~ 197 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQR 197 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 689999999999999999999998887655443
No 28
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.1e-34 Score=215.01 Aligned_cols=161 Identities=24% Similarity=0.492 Sum_probs=144.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
++||+++|++|+|||||+++|..+.++..+.+|.+..+. ..+.+++..+.+.+|||+|++.+......+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 479999999999999999999999999888899887764 5677889999999999999999999999999999999999
Q ss_pred EECCCHHHHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCccc------------cccCCHHHHHHHHHHhCC-cEEEecCC
Q psy8722 95 YDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEK------------QRTVMQEDAEKYAQSVGA-VHFHTSAK 160 (223)
Q Consensus 95 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (223)
||++++.||+.+ ..|+..+.... ++.|+++|+||.|+.. .+.+..++++++++.+++ +|+++||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 78999998765 4689999999999854 245788999999999997 79999999
Q ss_pred CCCC-HHHHHHHHHHHHH
Q psy8722 161 MNRG-IEEMFLELSQRML 177 (223)
Q Consensus 161 ~~~~-i~~~~~~i~~~~~ 177 (223)
+|++ ++++|..+++..+
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998654
No 29
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=1.9e-34 Score=221.69 Aligned_cols=164 Identities=32% Similarity=0.577 Sum_probs=149.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECC-eEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG-KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
+||+++|++|+|||||+++|....+...+.+|.+.++....+.+++ ..+.+.||||+|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888999999998888887754 568999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLG---NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
||++++++|+.+..|+..+..... .+.|+++|+||.|+...+.+..++..+++..++++++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999987653 35689999999999877788888999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy8722 172 LSQRMLEK 179 (223)
Q Consensus 172 i~~~~~~~ 179 (223)
+...+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99998765
No 30
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5.1e-34 Score=215.10 Aligned_cols=165 Identities=38% Similarity=0.662 Sum_probs=151.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999888778889988887778888888899999999999999889999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
|++++.+|..+..|+..+........|+++++||.|+.....+..++...++...+++++++||+++.|++++|.++++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988766678999999999998777777888888988889999999999999999999999999
Q ss_pred HHHHH
Q psy8722 176 MLEKA 180 (223)
Q Consensus 176 ~~~~~ 180 (223)
+..+.
T Consensus 161 ~~~~~ 165 (188)
T cd04125 161 IIKRL 165 (188)
T ss_pred HHHHh
Confidence 87653
No 31
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.5e-34 Score=219.78 Aligned_cols=166 Identities=26% Similarity=0.453 Sum_probs=149.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
...+||+++|+.|||||+|+++|..+.|...+.+|.+..+. ..+.+++..+.+.||||+|++.|..+...+++++|++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 56889999999999999999999999999999999987774 45778899999999999999999999999999999999
Q ss_pred EEEECCCHHHHHH-HHHHHHHHHHHcCCCCeEEEEEeCCCccc------------cccCCHHHHHHHHHHhCC-cEEEec
Q psy8722 93 LVYDITDEDSFEK-VKNWVKELKKMLGNDICLTIAGNKIDLEK------------QRTVMQEDAEKYAQSVGA-VHFHTS 158 (223)
Q Consensus 93 ~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~S 158 (223)
+|||++++.+|+. +..|+..+.... ++.|+++|+||+|+.. .+.+..++++++++.+++ .|++||
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 9999999999998 478999998765 4689999999999864 367888999999999999 699999
Q ss_pred CCCCC-CHHHHHHHHHHHHHHHH
Q psy8722 159 AKMNR-GIEEMFLELSQRMLEKA 180 (223)
Q Consensus 159 a~~~~-~i~~~~~~i~~~~~~~~ 180 (223)
|++|. |++++|..++..+++..
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~~~ 191 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLNKL 191 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHHhc
Confidence 99998 89999999999887643
No 32
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=4.6e-34 Score=210.19 Aligned_cols=160 Identities=36% Similarity=0.682 Sum_probs=148.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||++++..+.+.+.+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888899998887788888888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
|++++.+|+.+..|+..+......++|+++|+||.|+...+.+..++...+++.++.+|+++||++|.|++++|.+|+++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999987766679999999999998888888899999999999999999999999999999999865
No 33
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=4.1e-34 Score=212.58 Aligned_cols=164 Identities=32% Similarity=0.582 Sum_probs=148.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 58999999999999999999999999888888887655 44567788889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++..++++.++++|+++||+++.|++++|++++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999999998887754 35799999999999987788888899999999999999999999999999999999
Q ss_pred HHHHHH
Q psy8722 174 QRMLEK 179 (223)
Q Consensus 174 ~~~~~~ 179 (223)
+.+...
T Consensus 161 ~~~~~~ 166 (172)
T cd04141 161 REIRRK 166 (172)
T ss_pred HHHHHh
Confidence 887764
No 34
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=7e-34 Score=212.79 Aligned_cols=167 Identities=38% Similarity=0.658 Sum_probs=150.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC----------CeEEEEEEEeCCCccccccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA----------GKRLNLAIWDTAGQERFHALGP 82 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~ 82 (223)
++.+||+++|++|+|||||++++....+...+.++.+.++....+.+. +..+.+.+||++|++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 467999999999999999999999999998888999888876666554 4568999999999999999999
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM 161 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (223)
.+++++|++++|||++++.+|..+..|+..+.... .++.|+++|+||+|+...+.+..++..+++...+++++++||++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 99999999999999999999999999999987754 35689999999999987778888889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~ 179 (223)
+.|++++|++|++.++++
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 162 GTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999888654
No 35
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=9e-34 Score=208.61 Aligned_cols=161 Identities=42% Similarity=0.754 Sum_probs=153.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
||+++|+.|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||++|++.+......++.++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 97 ITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
++++.|++.+..|+..+......+.|++|++||.|+...+.+..+++++++..++.+|+++|++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998876799999999999988889999999999999999999999999999999999999987
Q ss_pred H
Q psy8722 177 L 177 (223)
Q Consensus 177 ~ 177 (223)
+
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 36
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=8.1e-34 Score=209.77 Aligned_cols=163 Identities=36% Similarity=0.732 Sum_probs=150.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
.+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999998888888888888888888888888889999999999999988889999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
||+++++++..+..|+..+.....++.|+++++||.|+.....+..++...++..++++++++||++|.|++++|..|++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999998876567899999999999877778888999999999999999999999999999999998
Q ss_pred HHH
Q psy8722 175 RML 177 (223)
Q Consensus 175 ~~~ 177 (223)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 775
No 37
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=213.33 Aligned_cols=167 Identities=29% Similarity=0.527 Sum_probs=148.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
...+||+++|++|+|||||++++....+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|+++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 3469999999999999999999998888878788887766 456678888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
+|||++++.+|+.+..|+..+.... ..+.|+++|+||.|+...+.+..++...++..++.+++++||+++.|+.++|.+
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 9999999999999999999887654 357899999999999777777778888888888999999999999999999999
Q ss_pred HHHHHHHHH
Q psy8722 172 LSQRMLEKA 180 (223)
Q Consensus 172 i~~~~~~~~ 180 (223)
|++.+.+..
T Consensus 162 l~~~l~~~~ 170 (189)
T PTZ00369 162 LVREIRKYL 170 (189)
T ss_pred HHHHHHHHh
Confidence 999887553
No 38
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=9.9e-34 Score=213.92 Aligned_cols=163 Identities=26% Similarity=0.525 Sum_probs=144.0
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
..+||+++|+.|||||||++++..+.+...+.+|.+..+. ..+.+++..+.+.+|||+|++.|..++..+++++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 3589999999999999999999999998888899887654 445678888999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhC-CcEEEecC
Q psy8722 94 VYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVG-AVHFHTSA 159 (223)
Q Consensus 94 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 159 (223)
|||++++.||+.+. .|+..+.... +++|+++|+||.|+.+. +.+..++..+++..++ .+|+++||
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999997 5988887654 47999999999999654 2356788899999998 58999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~ 178 (223)
++|.|+.++|+++++.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999988754
No 39
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.4e-33 Score=208.30 Aligned_cols=162 Identities=36% Similarity=0.664 Sum_probs=147.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988888888888877777777888899999999999999988999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
|++++.+++.+..|+..+........|+++|+||+|+...+.+..++..+++..++.+++++||+++.|+.++|+++...
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999987766678999999999998777777788888999999999999999999999999999886
Q ss_pred HH
Q psy8722 176 ML 177 (223)
Q Consensus 176 ~~ 177 (223)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 54
No 40
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.4e-33 Score=212.99 Aligned_cols=165 Identities=32% Similarity=0.537 Sum_probs=145.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
||+++|.+|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..+++++|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999998888877778877655 3455678888899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 97 ITDEDSFEKVKNWVKELKKMLG---NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
+++..+|+.+..|+..+..... .+.|+++|+||+|+...+.+..++..+++..++++++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999998876543 5689999999999977777788888889998999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy8722 174 QRMLEKAQE 182 (223)
Q Consensus 174 ~~~~~~~~~ 182 (223)
+.+..+...
T Consensus 160 ~~l~~~~~~ 168 (190)
T cd04144 160 RALRQQRQG 168 (190)
T ss_pred HHHHHhhcc
Confidence 887655444
No 41
>KOG0097|consensus
Probab=100.00 E-value=5.2e-34 Score=195.75 Aligned_cols=177 Identities=33% Similarity=0.648 Sum_probs=166.3
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
++.+-+|.+++|+-|+|||+|++.|+..+|-..-..++|.++..+.+.+.+.++++++|||+|+++|+.....|++.+.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 35677899999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+++|||+..+.++..+..|+...+...+++..+++++||.|++..+.+..+++++|+.++|..|+++|+++|.++.+.|-
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy8722 171 ELSQRMLEKAQEFDLAK 187 (223)
Q Consensus 171 ~i~~~~~~~~~~~~~~~ 187 (223)
....++++.-++...+.
T Consensus 167 e~akkiyqniqdgsldl 183 (215)
T KOG0097|consen 167 ETAKKIYQNIQDGSLDL 183 (215)
T ss_pred HHHHHHHHhhhcCcccc
Confidence 99998888777655444
No 42
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=4.7e-33 Score=206.19 Aligned_cols=166 Identities=35% Similarity=0.703 Sum_probs=152.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
...+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+......+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999998888888888888888888888888889999999999999888888999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
+|||++++.+++.+..|+..+.....++.|+++|+||.|+.....+..++...++...++.++++||+++.|++++|.++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988766789999999999997777778888999999999999999999999999999999
Q ss_pred HHHHHH
Q psy8722 173 SQRMLE 178 (223)
Q Consensus 173 ~~~~~~ 178 (223)
++.+++
T Consensus 162 ~~~~~~ 167 (168)
T cd01866 162 AKEIYE 167 (168)
T ss_pred HHHHHh
Confidence 988754
No 43
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=2.9e-33 Score=206.68 Aligned_cols=162 Identities=33% Similarity=0.627 Sum_probs=148.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888999999988888888898999999999999998888899999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcC-----CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLG-----NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
|++++.++..+..|+..+..... .+.|+++|+||+|+...+.+..++...++...+++++++||+++.|+.++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999987654 4689999999999975566678888888888899999999999999999999
Q ss_pred HHHHHHH
Q psy8722 171 ELSQRML 177 (223)
Q Consensus 171 ~i~~~~~ 177 (223)
+|++.++
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998875
No 44
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=3.5e-33 Score=209.23 Aligned_cols=162 Identities=27% Similarity=0.548 Sum_probs=143.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|+.|+|||||+++|..+.+...+.+|.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888999999988888889998899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc-----cccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK-----QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
|++++.+|+.+..|+..+........| ++|+||+|+.. ......++..+++...+.+++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999876555567 57899999842 111224567788888899999999999999999999
Q ss_pred HHHHHHHH
Q psy8722 171 ELSQRMLE 178 (223)
Q Consensus 171 ~i~~~~~~ 178 (223)
++.+.+++
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99988865
No 45
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=4.8e-33 Score=205.36 Aligned_cols=163 Identities=39% Similarity=0.712 Sum_probs=150.2
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+++|++|||||||++++....+...+.++.+.++....+..++..+.+.+||+||++.+..++..++++++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 46899999999999999999999888888888999988888888888888899999999999998888999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
|||++++.++..+..|+..+......+.|+++|+||.|+...+.+..++...++...+++++++||++|.|++++|++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999887766799999999999987777788888999988899999999999999999999998
Q ss_pred HHH
Q psy8722 174 QRM 176 (223)
Q Consensus 174 ~~~ 176 (223)
+.+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 775
No 46
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=4.4e-33 Score=213.70 Aligned_cols=165 Identities=21% Similarity=0.475 Sum_probs=144.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
++||+|+|++|+|||||+++|..+.++..+.+|.+..+. ..+.+++..+.+.||||+|++.|..++..+++++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 479999999999999999999999999899999987764 4667888899999999999999999999999999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cEEEecCC
Q psy8722 95 YDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VHFHTSAK 160 (223)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (223)
||++++++|+.+. .|...+.... ++.|++||+||+|+... .++..++...++++.++ +|+||||+
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 9999999999985 5877765543 57999999999999542 23677889999999996 89999999
Q ss_pred CCCC-HHHHHHHHHHHHHHHHH
Q psy8722 161 MNRG-IEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 161 ~~~~-i~~~~~~i~~~~~~~~~ 181 (223)
++.+ |.++|..++.+.+.+..
T Consensus 159 ~~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 159 SSERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred cCCcCHHHHHHHHHHHHHhccC
Confidence 9985 99999999998776544
No 47
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=4.8e-33 Score=207.37 Aligned_cols=160 Identities=28% Similarity=0.535 Sum_probs=141.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
.+||+++|++|+|||||+++|..+.+...+.+|.+..+. ..+.+++..+.+.+|||+|++.+...+..+++++|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 379999999999999999999999998888899887764 3466788889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhC-CcEEEecCC
Q psy8722 95 YDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVG-AVHFHTSAK 160 (223)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 160 (223)
||++++.+|+.+. .|+..+.... +++|+++|+||.|+... +.+..+++.+++...+ ..|+++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999997 5988887654 46899999999998543 5667788888998887 689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy8722 161 MNRGIEEMFLELSQRM 176 (223)
Q Consensus 161 ~~~~i~~~~~~i~~~~ 176 (223)
+|.|+.++|+.++.+.
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998754
No 48
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=2.4e-32 Score=209.53 Aligned_cols=172 Identities=36% Similarity=0.664 Sum_probs=148.9
Q ss_pred CCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q psy8722 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87 (223)
Q Consensus 8 ~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (223)
+..+....+||+|+|++|+|||||+++|....+. .+.++.+.++....+.+++..+.+.+|||||++.+..++..++++
T Consensus 7 ~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 85 (211)
T PLN03118 7 QSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRN 85 (211)
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhc
Confidence 4445677899999999999999999999977764 557788888877777788888899999999999999999999999
Q ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCH
Q psy8722 88 SNGAVLVYDITDEDSFEKVKN-WVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (223)
+|++|+|||++++.+|..+.. |...+.... ..+.|+++|+||.|+...+.+..++...++...+++|+++||+++.|+
T Consensus 86 ~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 86 AQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENV 165 (211)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999999976 766665443 245799999999999777777778888889889999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRMLEKA 180 (223)
Q Consensus 166 ~~~~~~i~~~~~~~~ 180 (223)
+++|++|...+....
T Consensus 166 ~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 166 EQCFEELALKIMEVP 180 (211)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999997653
No 49
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=8.5e-33 Score=204.12 Aligned_cols=162 Identities=44% Similarity=0.750 Sum_probs=147.3
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 57999999999999999999999888888778888888877788888888899999999999998888999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i 172 (223)
|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++...+. .++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999887667899999999999987777778888899988886 68999999999999999999
Q ss_pred HHH
Q psy8722 173 SQR 175 (223)
Q Consensus 173 ~~~ 175 (223)
.+.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 865
No 50
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=8.3e-33 Score=203.31 Aligned_cols=160 Identities=39% Similarity=0.709 Sum_probs=148.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888888888888888888888888899999999999999888899999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
|++++.++..+..|+..+.....+++|+++++||.|+...+.+..++...++...++.++++||+++.|+.++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999999887777789999999999997777778889999999999999999999999999999999875
No 51
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=7.1e-33 Score=203.89 Aligned_cols=161 Identities=33% Similarity=0.603 Sum_probs=142.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
.+||+++|++|||||||++++..+.+...+.+|.+. .....+.+++..+.+.+|||+|++.+...+..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 379999999999999999999988887777777763 3455677888888999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
||++++.+++.+..|+..+..... .++|+++++||+|+...+.+..++..+++..++.+++++||+++.|+.++|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999998877543 5789999999999977667777788888888889999999999999999999998
Q ss_pred HHH
Q psy8722 174 QRM 176 (223)
Q Consensus 174 ~~~ 176 (223)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 764
No 52
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.6e-32 Score=211.24 Aligned_cols=164 Identities=28% Similarity=0.505 Sum_probs=146.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
...+||+++|.+|+|||||++++..+.+...+.+|.+.++....+..++..+.+.+|||+|++.+...+..+++++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 78899999999999999999999999998888999999888877778888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
+|||++++.+|..+..|+..+.... ++.|+++|+||+|+.. +.+..++. +++...+++|+++||++|.|+.++|.+|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999998765 5699999999999854 33344444 7778888999999999999999999999
Q ss_pred HHHHHHH
Q psy8722 173 SQRMLEK 179 (223)
Q Consensus 173 ~~~~~~~ 179 (223)
++.+.+.
T Consensus 168 ~~~~~~~ 174 (219)
T PLN03071 168 ARKLAGD 174 (219)
T ss_pred HHHHHcC
Confidence 9988654
No 53
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.4e-32 Score=205.78 Aligned_cols=166 Identities=31% Similarity=0.542 Sum_probs=143.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA-GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
+||+++|++|+|||||+++|..+.+...+.++.+.++... +... +..+.+.+|||+|++.+...+..+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999999888888887776443 4444 6778999999999999998888899999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc----ccCCHHHHHHHHHHhCC-cEEEecCCCCCCHHHH
Q psy8722 95 YDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ----RTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIEEM 168 (223)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~ 168 (223)
||++++.+|+.+. .|+..+.... ++.|+++|+||.|+... +.+..++..+++..++. +++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999986 4888776543 56899999999998543 34567888899999998 8999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8722 169 FLELSQRMLEKAQEF 183 (223)
Q Consensus 169 ~~~i~~~~~~~~~~~ 183 (223)
|+.+.+.++......
T Consensus 159 f~~l~~~~~~~~~~~ 173 (187)
T cd04132 159 FDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHhhhhhh
Confidence 999999988765544
No 54
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.8e-32 Score=202.12 Aligned_cols=161 Identities=33% Similarity=0.611 Sum_probs=143.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
++||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 47999999999999999999998888777778877665 35677788889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
||+++..+|+.+..|+..+.... ..+.|+++++||+|+.....+..++..++++.++.+++++||+++.|++++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999999887653 36799999999999977766777778888888899999999999999999999998
Q ss_pred HHH
Q psy8722 174 QRM 176 (223)
Q Consensus 174 ~~~ 176 (223)
+.+
T Consensus 160 ~~l 162 (164)
T cd04175 160 RQI 162 (164)
T ss_pred HHh
Confidence 765
No 55
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=5e-32 Score=205.00 Aligned_cols=164 Identities=40% Similarity=0.706 Sum_probs=144.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCC-CCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNE-KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
+||+|+|++|+|||||+++|..+.+.. .+.++.+..+....+.+++..+.+.+||++|++.+..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999888874 5778888888777888899889999999999999988888899999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc----ccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ----RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
||++++.+++.+..|+..+... .++.|+++|+||.|+... +.+..+++.+++...+++++++||+++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL-EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc-CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999999988765 346899999999998432 34556778888888899999999999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 171 ELSQRMLEKA 180 (223)
Q Consensus 171 ~i~~~~~~~~ 180 (223)
+|.+.+....
T Consensus 160 ~i~~~~~~~~ 169 (193)
T cd04118 160 KVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHhc
Confidence 9999887543
No 56
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=4.2e-32 Score=200.68 Aligned_cols=160 Identities=31% Similarity=0.584 Sum_probs=141.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++.+...+..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888888889888887777777888899999999999999888888999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
|++++.++..+..|+..+..... ++|+++|+||+|+.. +.+. .+..+++...+.+++++||++|.|++++|++|++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999988765 799999999999863 3333 34456777778899999999999999999999988
Q ss_pred HHH
Q psy8722 176 MLE 178 (223)
Q Consensus 176 ~~~ 178 (223)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 864
No 57
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=3.4e-32 Score=200.37 Aligned_cols=163 Identities=46% Similarity=0.821 Sum_probs=149.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+......+++++|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 68999999999999999999988888888888888888888888888889999999999999888899999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
|++++.+++.+..|+..+.....+++|+++++||+|+...+.+..+.+.+++...+++++++|++++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988776789999999999997767777888888999999999999999999999999999988
Q ss_pred HHH
Q psy8722 176 MLE 178 (223)
Q Consensus 176 ~~~ 178 (223)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 754
No 58
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=2.3e-32 Score=201.04 Aligned_cols=159 Identities=34% Similarity=0.618 Sum_probs=144.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC--CeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+||+++|++|+|||||++++..+.+...+.++.+.++....+.++ +..+.+.+|||||++.+...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999988888888899888877777776 777899999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
|||+++++++..+..|+..+.... .++|+++|+||.|+.....+..++..+++..++++++++|++++.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999987654 4689999999999977777788889999999999999999999999999999987
Q ss_pred HH
Q psy8722 174 QR 175 (223)
Q Consensus 174 ~~ 175 (223)
..
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 54
No 59
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=4.9e-32 Score=201.02 Aligned_cols=162 Identities=31% Similarity=0.581 Sum_probs=143.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
||+++|++|+|||||++++..+.+...+.+|.+.++....+.+++..+.+.+|||+|++++..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998999999999887888888888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCcccccc--CCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 97 ITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRT--VMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
++++.++..+..|+..+.+.. ....|+++|+||.|+..... ...++..+++..++.+++++||+++.|++++|+.|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999876543 34578999999999855433 345667788888889999999999999999999999
Q ss_pred HHHHH
Q psy8722 174 QRMLE 178 (223)
Q Consensus 174 ~~~~~ 178 (223)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88754
No 60
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=4.6e-32 Score=201.12 Aligned_cols=163 Identities=38% Similarity=0.652 Sum_probs=146.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.+..+||+++|++|+|||||++++....+.+.+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 35679999999999999999999999888888888888888777888899999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIE 166 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 166 (223)
++|||++++.+++.+..|+..+..... .++|+++++||.|+. .+.+..+++.+++..++. +++++||+++.|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 999999999999999999988766542 468999999999986 556678889999988885 79999999999999
Q ss_pred HHHHHHHHH
Q psy8722 167 EMFLELSQR 175 (223)
Q Consensus 167 ~~~~~i~~~ 175 (223)
++|+.+++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999999865
No 61
>KOG0081|consensus
Probab=100.00 E-value=4.3e-34 Score=199.57 Aligned_cols=174 Identities=34% Similarity=0.603 Sum_probs=159.7
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC---------CeEEEEEEEeCCCccccccc
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA---------GKRLNLAIWDTAGQERFHAL 80 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~ 80 (223)
-++.+-||.+.+|++|+|||+++.+++.+.|..+...|.|.++..+.+-++ +..+.+++|||+|+++|+++
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 356778899999999999999999999999999999999999988877652 35578999999999999999
Q ss_pred cccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecC
Q psy8722 81 GPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
...++++|=+++++||+++..||-++..|+..++.+.- ++.-+++++||.|+++.+.++.+++.+++.++++|||++||
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA 163 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence 99999999999999999999999999999999987643 55678999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQRMLEKAQEF 183 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~~~~~~ 183 (223)
-+|.|+.+..+.+...++++.++-
T Consensus 164 ~tg~Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887664
No 62
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=4.7e-32 Score=199.69 Aligned_cols=161 Identities=30% Similarity=0.584 Sum_probs=141.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
++||+++|++|+|||||++++..+.+.+.+.++.+ ++....+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999998888877777765 44456677788888999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
||++++.++..+..|+..+..... .++|+++++||+|+...+.+...+...++...+.+++++||+++.|+.++|.++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999998877643 5799999999999976666667778888888889999999999999999999998
Q ss_pred HHH
Q psy8722 174 QRM 176 (223)
Q Consensus 174 ~~~ 176 (223)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 754
No 63
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=6.7e-32 Score=201.02 Aligned_cols=159 Identities=28% Similarity=0.568 Sum_probs=139.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
.+||+++|++|+|||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..+++++|++|+|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 37999999999999999999999999888888876544 44566788889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cEEEecCC
Q psy8722 95 YDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VHFHTSAK 160 (223)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (223)
||++++.+|+.+. .|+..+.... ++.|+++|+||.|+... +.+..+++.+++..++. +++++||+
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999996 5988887654 47999999999998542 35778899999999985 99999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy8722 161 MNRGIEEMFLELSQR 175 (223)
Q Consensus 161 ~~~~i~~~~~~i~~~ 175 (223)
+|.|++++|+.+++.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999998764
No 64
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=8.4e-32 Score=197.85 Aligned_cols=160 Identities=39% Similarity=0.714 Sum_probs=146.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||++++++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999998888888899999988888888888889999999999999888899999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
|++++.+|+.+..|+..+....+.+.|+++++||+|+........++...++...+++++++|++++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999999877665579999999999996666677888888888889999999999999999999999875
No 65
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1e-31 Score=197.62 Aligned_cols=160 Identities=26% Similarity=0.540 Sum_probs=140.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||++++....+.+.+.++.+.++....+.+++..+.+.+|||+|++.+...+..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998888887778777777777778888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
|++++.++..+..|+..+.... ++.|+++++||+|+... ..++...++...+++++++||+++.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999987653 46899999999998432 2344566777778899999999999999999999988
Q ss_pred HHHH
Q psy8722 176 MLEK 179 (223)
Q Consensus 176 ~~~~ 179 (223)
++++
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 8765
No 66
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=8.8e-32 Score=198.75 Aligned_cols=159 Identities=30% Similarity=0.506 Sum_probs=139.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+|||+|++.+..++..+++.++++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999888877777776554 344556677789999999999999888888899999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLG---NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
|++++.+++.+..|+..+..... +++|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999999988876543 568999999999997766777788888888889999999999999999999998
Q ss_pred HHH
Q psy8722 173 SQR 175 (223)
Q Consensus 173 ~~~ 175 (223)
++.
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 753
No 67
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1.3e-31 Score=198.81 Aligned_cols=162 Identities=34% Similarity=0.654 Sum_probs=146.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccc-cccccccccCCEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH-ALGPIYYRMSNGAVL 93 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~ 93 (223)
.+||+++|++|+|||||++++....+...+.++.+.++....+.+++..+.+.+||++|++.+. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999888888888888888888888888988999999999998876 467888999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC---CCCHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM---NRGIEEMF 169 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~ 169 (223)
|||++++.++..+..|+..+.... ..++|+++|+||.|+...+.+..++..+++...+++|+++||++ +.++.++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999999988764 35799999999999988888888888999999999999999999 89999999
Q ss_pred HHHHHHH
Q psy8722 170 LELSQRM 176 (223)
Q Consensus 170 ~~i~~~~ 176 (223)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9988765
No 68
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1.2e-31 Score=197.58 Aligned_cols=161 Identities=35% Similarity=0.626 Sum_probs=141.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||++++...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998888877777666433 456667888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
|++++++++.+..|...+.+... .+.|+++|+||+|+...+.+..++...++...+.+++++||+++.|++++|++|++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999999888776543 46899999999999776667778888889889999999999999999999999987
Q ss_pred HHH
Q psy8722 175 RML 177 (223)
Q Consensus 175 ~~~ 177 (223)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 654
No 69
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=1.9e-31 Score=196.31 Aligned_cols=162 Identities=46% Similarity=0.854 Sum_probs=148.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
++||+++|++|+|||||++++.+..+...+.++.+..+....+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999888877788888888788888899889999999999999888888899999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
+|++++.++..+..|+..+.....+.+|+++++||+|+...+....++...++..++++++++||++|.|+.++|+++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999998876677999999999998766667788888899999999999999999999999999998
Q ss_pred HH
Q psy8722 175 RM 176 (223)
Q Consensus 175 ~~ 176 (223)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 70
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1.8e-31 Score=196.57 Aligned_cols=162 Identities=31% Similarity=0.548 Sum_probs=141.7
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+++|++|+|||||++++....+...+.++.+..+ .....+++..+.+.+|||||++++..++..+++++|++++
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 468999999999999999999998887777777776544 3445678888899999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
|||++++.+++.+..|+..+.+.. ..+.|+++++||+|+...+.+..++..+++...+++++++||++|.|++++|++|
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 999999999999999998887753 3578999999999997776677778888888889999999999999999999999
Q ss_pred HHHH
Q psy8722 173 SQRM 176 (223)
Q Consensus 173 ~~~~ 176 (223)
+..+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8754
No 71
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.2e-31 Score=202.23 Aligned_cols=161 Identities=30% Similarity=0.537 Sum_probs=139.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
.||+++|++|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999998888888877664 45567788889999999999999999999999999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCccccc------------cCCHHHHHHHHHHhC-CcEEEecCCC
Q psy8722 96 DITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQR------------TVMQEDAEKYAQSVG-AVHFHTSAKM 161 (223)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~ 161 (223)
|++++.+|+.+. .|+..+.... ++.|+++|+||+|+...+ .+..++..+++...+ ++|+++||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999986 5998887654 478999999999996543 345667778887777 6899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRMLE 178 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~~~ 178 (223)
|.|++++|.++++.++.
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988873
No 72
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=2.4e-31 Score=195.32 Aligned_cols=160 Identities=33% Similarity=0.589 Sum_probs=139.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
++||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++++++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 47999999999999999999998888777777776554 45566788888899999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
||++++.+++.+..|+..+.+.. ..+.|+++|+||+|+.. +.....+..+++...+.+++++||+++.|++++|++++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999998887764 35789999999999865 44567778888888899999999999999999999998
Q ss_pred HHH
Q psy8722 174 QRM 176 (223)
Q Consensus 174 ~~~ 176 (223)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 654
No 73
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=2.5e-31 Score=201.57 Aligned_cols=165 Identities=26% Similarity=0.335 Sum_probs=139.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc--------ccccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL--------GPIYYRM 87 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~ 87 (223)
+||+|+|.+|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||||...+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999998888888888887776667778888899999999997654221 2234789
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHc---CCCCeEEEEEeCCCccccccCCHHHHHHHHH-HhCCcEEEecCCCCC
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML---GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-SVGAVHFHTSAKMNR 163 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 163 (223)
+|++|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..++..+++. .++++|+++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999999887764 4679999999999997666666677776654 568899999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRMLEKA 180 (223)
Q Consensus 164 ~i~~~~~~i~~~~~~~~ 180 (223)
|++++|+.++..++.+.
T Consensus 161 ~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 161 HILLLFKELLISATTRG 177 (198)
T ss_pred CHHHHHHHHHHHhhccC
Confidence 99999999998887553
No 74
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=3.1e-31 Score=195.45 Aligned_cols=160 Identities=28% Similarity=0.497 Sum_probs=141.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC--CCCCCCccccceeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED--KFNEKHITTLQASFLNKKLNIA-GKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
+||+++|++|||||||++++..+ .+...+.++.+.++....+.+. +..+.+.+|||+|++.+..++..++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999854 6778888899888877776664 56789999999999999888899999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.....+.......+....+.+++++||+++.|+.++|+.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999988764 468999999999997766667767777778888899999999999999999999
Q ss_pred HHHH
Q psy8722 173 SQRM 176 (223)
Q Consensus 173 ~~~~ 176 (223)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8875
No 75
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=3e-31 Score=200.99 Aligned_cols=156 Identities=28% Similarity=0.536 Sum_probs=140.1
Q ss_pred ECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCH
Q psy8722 21 LGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDE 100 (223)
Q Consensus 21 iG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 100 (223)
+|..|||||||++++..+.+...+.+|.+.++....+.+++..+.+.||||+|++.|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999998888888889999998888888888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 101 DSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 101 ~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
.+|..+..|+..+.+.. +++|+++|+||+|+.. +.+..+. .+++...++.|+++||++|.|+.++|.+|+..+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999998865 4799999999999854 3444443 467888899999999999999999999999988764
No 76
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=5.9e-31 Score=193.21 Aligned_cols=161 Identities=72% Similarity=1.146 Sum_probs=145.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||++++....+...+.++.+..+....+...+..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999988887777777777777777777788889999999999999888888999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
|++++.+++.+..|+..+......++|+++++||+|+.....+..++..+++...+.+++++|++++.|++++++++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988776689999999999998777777788888888899999999999999999999999876
Q ss_pred H
Q psy8722 176 M 176 (223)
Q Consensus 176 ~ 176 (223)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 77
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=3.4e-31 Score=200.16 Aligned_cols=158 Identities=23% Similarity=0.402 Sum_probs=130.4
Q ss_pred eeEEEEECCCCCcHHHHHH-HHhhCC-----CCCCCccccce-eEEEEE--------EEECCeEEEEEEEeCCCcccccc
Q psy8722 15 SFKVVLLGEGCVGKTSVVL-RYVEDK-----FNEKHITTLQA-SFLNKK--------LNIAGKRLNLAIWDTAGQERFHA 79 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~ 79 (223)
.+||+++|+.|||||||+. ++.+.. +...+.||++. +..... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 554433 44566777752 322222 24678889999999999875 3
Q ss_pred ccccccccCCEEEEEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCccc-------------------cccCC
Q psy8722 80 LGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEK-------------------QRTVM 139 (223)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~ 139 (223)
....+++++|++|+|||++++.||+.+. .|+..+.... ++.|+++|+||+|+.. .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4566889999999999999999999997 5999887765 4689999999999864 46788
Q ss_pred HHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 140 QEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
.++++++++.++++|+||||++|.|++++|+.++++
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 899999999999999999999999999999998864
No 78
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=9.3e-31 Score=194.23 Aligned_cols=164 Identities=41% Similarity=0.700 Sum_probs=146.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988888888888888888888888888899999999999999888999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCccccccCCHHHHHHHHHHhC-CcEEEecCCCCCCHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG-AVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~ 170 (223)
|++++.+++.+..|...+..... .++|+++|+||+|+........++...++...+ .+++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999999999887766543 368999999999997666667788888888887 6899999999999999999
Q ss_pred HHHHHHHHH
Q psy8722 171 ELSQRMLEK 179 (223)
Q Consensus 171 ~i~~~~~~~ 179 (223)
+|.+.+++.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999988876
No 79
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.98 E-value=1.4e-30 Score=192.83 Aligned_cols=162 Identities=31% Similarity=0.626 Sum_probs=143.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
++||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 47999999999999999999998888777777776554 56667788889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC-CcEEEecCCCCCCHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG-AVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i 172 (223)
||++++.+++.+..|...+.+.. ..+.|+++++||.|+...+....++...++..++ ++++++||+++.|++++|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999887654 3579999999999997777777788888888888 799999999999999999999
Q ss_pred HHHHH
Q psy8722 173 SQRML 177 (223)
Q Consensus 173 ~~~~~ 177 (223)
+..++
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 98765
No 80
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.98 E-value=9e-31 Score=194.84 Aligned_cols=158 Identities=31% Similarity=0.611 Sum_probs=138.1
Q ss_pred EEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEEC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDI 97 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 97 (223)
|+|+|++|+|||||+++|..+.+...+.++....+ ...+.+++..+.+.+|||+|++.+..++..++.++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999998888777776555 34566788888999999999999999999999999999999999
Q ss_pred CCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cEEEecCCCCC
Q psy8722 98 TDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VHFHTSAKMNR 163 (223)
Q Consensus 98 ~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 163 (223)
+++.+|+.+. .|+..+.... ++.|+++|+||+|+... +.+..++..+++...+. +++++||+++.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999986 5999887754 47999999999998542 23677888899999997 89999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRML 177 (223)
Q Consensus 164 ~i~~~~~~i~~~~~ 177 (223)
|++++|+.+++.++
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998765
No 81
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.98 E-value=1.1e-30 Score=192.92 Aligned_cols=160 Identities=31% Similarity=0.546 Sum_probs=137.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc-ccccccccccCCEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF-HALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d~~i~v~ 95 (223)
||+++|++|+|||||++++....+...+.++....+ ...+.+++..+.+.+||+||++.+ ......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999998887766667665444 455677888889999999998853 445667889999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCC-CCHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKML--GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMN-RGIEEMFLEL 172 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~~~~i 172 (223)
|++++.+|+.+..|+..+.... ..+.|+++|+||+|+...+.+..++..+++...+.+|+++||+++ .|++++|..+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999999888764 357999999999999777777888888999999999999999999 5999999999
Q ss_pred HHHHH
Q psy8722 173 SQRML 177 (223)
Q Consensus 173 ~~~~~ 177 (223)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98664
No 82
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=3.3e-30 Score=190.84 Aligned_cols=165 Identities=38% Similarity=0.698 Sum_probs=147.2
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.++|+++|++|+|||||++++....+.+.+.++.+.++....+.+.+..+.+.+||++|++.+...+..++..+|++
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 35679999999999999999999998888777778888888787888888888999999999999988888899999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
++|||+.++.++..+..|+..+......+.|+++++||+|+...+.+..+....+......+++++|+++|.|++++|++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence 99999999999999999999988876667999999999999777777777777787777789999999999999999999
Q ss_pred HHHHH
Q psy8722 172 LSQRM 176 (223)
Q Consensus 172 i~~~~ 176 (223)
|.+.+
T Consensus 164 i~~~~ 168 (169)
T cd04114 164 LACRL 168 (169)
T ss_pred HHHHh
Confidence 98765
No 83
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.98 E-value=1.7e-30 Score=190.35 Aligned_cols=153 Identities=21% Similarity=0.379 Sum_probs=130.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|+.|+|||||++++..+.+.+.+.++ +..+ ...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999988887665443 4444 45678888888999999999874 34668899999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCcc--ccccCCHHHHHHHHHHh-CCcEEEecCCCCCCHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLE--KQRTVMQEDAEKYAQSV-GAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|++++.||+.+..|+..+..... .++|+++|+||.|+. ..+.+..++.+++++.. ++.|++|||+++.||+++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999987754 568999999999985 35677888888898776 489999999999999999999
Q ss_pred HHHH
Q psy8722 172 LSQR 175 (223)
Q Consensus 172 i~~~ 175 (223)
+++.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8764
No 84
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.98 E-value=3e-30 Score=189.61 Aligned_cols=159 Identities=42% Similarity=0.763 Sum_probs=142.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 68999999999999999999988887777888888887777778888889999999999999888888999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
|++++.++..+..|+..+.... ..+.|+++++||+|+. ......++..+++...+++++++|+++|.|+.++++.+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999999999988765 3678999999999986 3345667888899999999999999999999999999887
Q ss_pred H
Q psy8722 175 R 175 (223)
Q Consensus 175 ~ 175 (223)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 85
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.3e-30 Score=193.26 Aligned_cols=163 Identities=20% Similarity=0.315 Sum_probs=141.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.+.+||+++|.+|+|||||+++|..+.+. ..+.+|.+..+....+.+++..+.+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 36799999999999999999999998888 78889998888777788888888999999999999988888899999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~ 170 (223)
++|||++++.+++.+..|+..+... .++|+++|+||.|+.........+..+++..+++ .++++||+++.|++++|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 9999999999999998888866432 3689999999999965554444556777888887 479999999999999999
Q ss_pred HHHHHHH
Q psy8722 171 ELSQRML 177 (223)
Q Consensus 171 ~i~~~~~ 177 (223)
.+.+.+.
T Consensus 160 ~l~~~~~ 166 (169)
T cd01892 160 KLATAAQ 166 (169)
T ss_pred HHHHHhh
Confidence 9998765
No 86
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=1.8e-30 Score=202.71 Aligned_cols=160 Identities=29% Similarity=0.475 Sum_probs=139.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||+++|..+.+...+.+|.+ ++....+.+++..+.+.||||+|++.|..+...++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999998888887777776 555667778888899999999999998888888889999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHH---------cCCCCeEEEEEeCCCccccccCCHHHHHHHHHH-hCCcEEEecCCCCCCH
Q psy8722 96 DITDEDSFEKVKNWVKELKKM---------LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS-VGAVHFHTSAKMNRGI 165 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~---------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 165 (223)
|++++++|+.+..|+..+... ...++|+++|+||+|+...+.+..+++.+++.. .++.++++||+++.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888654 224689999999999976667778888877754 4678999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 166 EEMFLELSQRM 176 (223)
Q Consensus 166 ~~~~~~i~~~~ 176 (223)
+++|++|.+.+
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 87
>KOG0083|consensus
Probab=99.97 E-value=7.2e-33 Score=188.16 Aligned_cols=161 Identities=35% Similarity=0.681 Sum_probs=151.0
Q ss_pred EECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECC
Q psy8722 20 LLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDIT 98 (223)
Q Consensus 20 viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 98 (223)
++|++++|||+|+=++..+.|. ....+|.|.++..+.+..++.++++++|||+|+++|++....|++.+|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6899999999999888866654 456799999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 99 DEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 99 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
+..||++.+.|+.++....+..+.+.+++||+|+..++.+..++.+++++.+++||.++||++|.|++..|-.|.+.+.+
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999988876
Q ss_pred HH
Q psy8722 179 KA 180 (223)
Q Consensus 179 ~~ 180 (223)
..
T Consensus 162 ~~ 163 (192)
T KOG0083|consen 162 LK 163 (192)
T ss_pred hc
Confidence 64
No 88
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=4.3e-30 Score=191.16 Aligned_cols=159 Identities=31% Similarity=0.613 Sum_probs=137.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999998888777777765444 445677888889999999999999999999999999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cEEEecCCC
Q psy8722 96 DITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VHFHTSAKM 161 (223)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 161 (223)
|+.++.+|+.+. .|+..+... .++.|+++++||+|+.+. +.+..+++..++..++. +++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999986 588888765 567999999999998543 35667888889988886 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRM 176 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~ 176 (223)
+.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999875
No 89
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=5.5e-30 Score=190.57 Aligned_cols=157 Identities=27% Similarity=0.514 Sum_probs=136.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||++++..+.+...+.+|. .+.....+.+++..+.+.+||+||++.+...+..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 689999999999999999999888888777775 4444556778888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCccc------------cccCCHHHHHHHHHHhCC-cEEEecCCC
Q psy8722 96 DITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEK------------QRTVMQEDAEKYAQSVGA-VHFHTSAKM 161 (223)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 161 (223)
|++++.+|+.+. .|+..+.... ++.|+++++||.|+.. .+.+..+++..++...+. .++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999985 6888887543 4689999999999853 456778889999999998 899999999
Q ss_pred CCCHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQ 174 (223)
Q Consensus 162 ~~~i~~~~~~i~~ 174 (223)
+.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999988764
No 90
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=3.5e-30 Score=198.55 Aligned_cols=166 Identities=21% Similarity=0.341 Sum_probs=141.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccc-cCCEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYR-MSNGAVL 93 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~ 93 (223)
+||+++|++|+|||||+++|..+.+. ..+.++.+.++....+.+++..+.+.+||++|++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999877776 56666666567777788888889999999999882 23344566 8999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
|||++++.+|+.+..|+..+.... ..++|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999999887754 2578999999999998777778888888888889999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 173 SQRMLEKAQEF 183 (223)
Q Consensus 173 ~~~~~~~~~~~ 183 (223)
++.+.......
T Consensus 159 ~~~~~~~~~~~ 169 (221)
T cd04148 159 VRQIRLRRDSK 169 (221)
T ss_pred HHHHHhhhccc
Confidence 99887655443
No 91
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=5.9e-30 Score=186.80 Aligned_cols=158 Identities=49% Similarity=0.866 Sum_probs=145.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888888889999888888888888899999999999988888899999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
|+++++++..+..|+..+......+.|+++++||+|+........++..+++...+.+++++|++++.|+.++|++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999999887766799999999999975666678889999998899999999999999999999886
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=3.6e-29 Score=184.17 Aligned_cols=161 Identities=34% Similarity=0.573 Sum_probs=141.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||++++....+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999998888777777766544 445567888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
|++++.++..+..|+..+..... .++|+++|+||+|+........++...++..++++++++||+++.|++++|+++.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999888887643 57999999999999765556677788888889999999999999999999999988
Q ss_pred HHH
Q psy8722 175 RML 177 (223)
Q Consensus 175 ~~~ 177 (223)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 765
No 93
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=6.8e-29 Score=188.57 Aligned_cols=163 Identities=29% Similarity=0.421 Sum_probs=135.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
||+++|++|+|||||+++|....+...+.++.. ++....+.+++..+.+.+||++|+..+..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999998888776666664 3445567778878899999999999988888889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccc-cccCCHHHHHHHHH-HhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 97 ITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEK-QRTVMQEDAEKYAQ-SVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
++++.+++.+..|+..+..... .++|+++|+||.|+.. .+.+..++..+... ..+.+++++||++|.|++++|++|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988877654 5799999999999854 34455555544443 4567899999999999999999999
Q ss_pred HHHHHHH
Q psy8722 174 QRMLEKA 180 (223)
Q Consensus 174 ~~~~~~~ 180 (223)
+.+....
T Consensus 160 ~~~~~~~ 166 (198)
T cd04147 160 RQANLPY 166 (198)
T ss_pred HHhhccc
Confidence 9776433
No 94
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=1.2e-28 Score=183.48 Aligned_cols=160 Identities=30% Similarity=0.602 Sum_probs=135.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
+.||+++|++|||||||+++|....+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..++.++|++++|
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 368999999999999999999998888888888776653 4567788888999999999999988888889999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cEEEecCC
Q psy8722 95 YDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VHFHTSAK 160 (223)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (223)
||++++++++.+. .|+..+.... .+.|+++++||.|+... ..+...+.++++...+. +++++||+
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999986 5888877643 46899999999998532 23456777888888775 79999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy8722 161 MNRGIEEMFLELSQRM 176 (223)
Q Consensus 161 ~~~~i~~~~~~i~~~~ 176 (223)
+|.|++++|++|.+.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998754
No 95
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=5e-29 Score=182.60 Aligned_cols=158 Identities=38% Similarity=0.628 Sum_probs=140.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
||+++|++|+|||||+++++...+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998777777777766 4555666677777899999999999888888889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 97 ITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
+++++++..+..|...+..... .+.|+++++||+|+...+....+++.+++..++.+++++|++++.|++++|++|++.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999988887765 579999999999997767777888999999999999999999999999999999875
No 96
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=1.6e-28 Score=184.90 Aligned_cols=163 Identities=28% Similarity=0.542 Sum_probs=136.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
+.||+|+|++|+|||||++++..+.+...+.++....+. ..+.+++..+.+.+||++|++.+......++..+|++++|
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 369999999999999999999977777766666655553 3556778778899999999988877777778999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCccc----------cccCCHHHHHHHHHHhCC-cEEEecCCCC
Q psy8722 95 YDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEK----------QRTVMQEDAEKYAQSVGA-VHFHTSAKMN 162 (223)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (223)
||+++.++++.+. .|+..+..... ++|+++|+||.|+.. .+.+..++...+++..+. +|+++||++|
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999997 59999887654 599999999999843 234556788888999985 8999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRMLEK 179 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~~~ 179 (223)
.|++++|+++.+.++.-
T Consensus 159 ~~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 159 EGVDDVFEAATRAALLV 175 (187)
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 99999999999877544
No 97
>KOG0395|consensus
Probab=99.97 E-value=7.7e-29 Score=186.50 Aligned_cols=165 Identities=37% Similarity=0.625 Sum_probs=152.7
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
..+||+++|.+|+|||+|..++....|...+.+|+. +.+.+.+.+++..+.+.|+||+|++.+..+...+++++|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999988 5557788889999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
||+++++.||+.+..++..+.+... ..+|+++||||+|+...+.+..++.+.++..++++|+|+||+.+.+++++|..+
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999999999855443 568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy8722 173 SQRMLEK 179 (223)
Q Consensus 173 ~~~~~~~ 179 (223)
...+...
T Consensus 161 ~r~~~~~ 167 (196)
T KOG0395|consen 161 VREIRLP 167 (196)
T ss_pred HHHHHhh
Confidence 9988763
No 98
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.96 E-value=1.8e-28 Score=184.04 Aligned_cols=170 Identities=23% Similarity=0.362 Sum_probs=134.2
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNI-AGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
+.+||+++|++|||||||++++....+... .+|.+.+.....+.. ++..+.+.+|||+|++.+...+..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999997777544 577776665555544 345688999999999999888999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHH--h----CCcEEEecCCCCCCH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS--V----GAVHFHTSAKMNRGI 165 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~----~~~~~~~Sa~~~~~i 165 (223)
+|+|++++.++..+..|+..+.... ..+.|+++++||+|+... ...++...+... . +.+++++||+++.|+
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 9999999999999888887776543 346899999999998543 234444444421 1 245789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy8722 166 EEMFLELSQRMLEKAQEFDLA 186 (223)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~~~~ 186 (223)
++++++|.+.+.+.++..+..
T Consensus 159 ~~l~~~l~~~l~~~~~~~~~~ 179 (183)
T cd04152 159 QEGLEKLYEMILKRRKMLRQQ 179 (183)
T ss_pred HHHHHHHHHHHHHHHhhhhhh
Confidence 999999999998776655443
No 99
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.96 E-value=6.6e-29 Score=183.89 Aligned_cols=155 Identities=20% Similarity=0.302 Sum_probs=123.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|+|||||++++....+. .+.+|.+.++. .+.. ..+.+.+|||+|++.+...+..+++++|++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999866664 35677776653 2223 3478999999999999888899999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHH-----hCCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS-----VGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 166 (223)
+|||++++.++..+..|+..+... ...++|+++|+||+|+... +..+++.+++.. ....++++||++|.|++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 999999999999988877665432 2346899999999998543 345666655432 22368999999999999
Q ss_pred HHHHHHHH
Q psy8722 167 EMFLELSQ 174 (223)
Q Consensus 167 ~~~~~i~~ 174 (223)
++|++|.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999864
No 100
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=4.5e-28 Score=181.33 Aligned_cols=163 Identities=34% Similarity=0.523 Sum_probs=140.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
.||+++|++|+|||||++++....+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998888777777766554 345567777788999999999998888888999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
|+++..+++.+..|+..+.... ..+.|+++++||+|+...+.+..++...++..++.+++++||+++.|+.++|+++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999877776653 356899999999999766666667778888888899999999999999999999998
Q ss_pred HHHHH
Q psy8722 175 RMLEK 179 (223)
Q Consensus 175 ~~~~~ 179 (223)
.+...
T Consensus 161 ~~~~~ 165 (180)
T cd04137 161 EIEKV 165 (180)
T ss_pred HHHHh
Confidence 77544
No 101
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=2.1e-28 Score=183.22 Aligned_cols=160 Identities=19% Similarity=0.288 Sum_probs=124.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
++.+||+++|+.|||||||++++..+.+. .+.+|.+.++. .+..+ .+.+.+||+||++.+..++..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 56799999999999999999999876665 45677776653 33343 478999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC-----CcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG-----AVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 166 (223)
+|||++++.++..+..|+..+... ...++|++|++||.|+.+.. ..++..+.+.... ..++++||++|+|+.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 999999999998888766655322 22468999999999986543 3344333332211 135579999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEK 179 (223)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (223)
++|++|.+.+..+
T Consensus 168 e~~~~l~~~~~~~ 180 (181)
T PLN00223 168 EGLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887654
No 102
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=2.2e-29 Score=185.79 Aligned_cols=153 Identities=20% Similarity=0.262 Sum_probs=125.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
.|+++|++|||||||+++|....+...+.+|.+... ..+++..+.+.+||++|++.+...+..+++++|++|+|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 379999999999999999998878777788887653 2234445889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCH----HHHHHHHHHhCCcEEEecCCC------CCCHH
Q psy8722 97 ITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQ----EDAEKYAQSVGAVHFHTSAKM------NRGIE 166 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~ 166 (223)
.+++.++.....|+..+.... +++|+++|+||.|+...+.+.. .++..++...++.++++||++ ++|++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999999999888876443 5799999999999876553321 123455566677888888888 99999
Q ss_pred HHHHHHHH
Q psy8722 167 EMFLELSQ 174 (223)
Q Consensus 167 ~~~~~i~~ 174 (223)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998874
No 103
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=8.9e-28 Score=178.02 Aligned_cols=157 Identities=32% Similarity=0.658 Sum_probs=132.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||+++|.+..+...+.++....+ ...+..++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999998888766666665443 445567788899999999999988888888889999999999
Q ss_pred ECCCHHHHHHHHH-HHHHHHHHcCCCCeEEEEEeCCCccccc-----------cCCHHHHHHHHHHhCC-cEEEecCCCC
Q psy8722 96 DITDEDSFEKVKN-WVKELKKMLGNDICLTIAGNKIDLEKQR-----------TVMQEDAEKYAQSVGA-VHFHTSAKMN 162 (223)
Q Consensus 96 d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (223)
|++++.++..... |+..+.... .+.|+++|+||+|+.... .+..++..+++..++. +++++||+++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 9999999988654 777777654 379999999999985544 3356778888888887 9999999999
Q ss_pred CCHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQ 174 (223)
Q Consensus 163 ~~i~~~~~~i~~ 174 (223)
.|+.++|++|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 104
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=1.1e-27 Score=184.29 Aligned_cols=167 Identities=29% Similarity=0.522 Sum_probs=145.4
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
......+||+++|++|||||||++++..+.+...+.+|.+.++....+..++..+.+.+||++|++.+...+..++.+++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 34567799999999999999999999988888888999999888877778888899999999999999888888999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
++++|||+++..++..+..|+..+.... .++|+++++||.|+... .... +..+++...++.++++|++++.|+++.|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKA-RQITFHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999988764 46899999999998543 2333 3346777788899999999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 170 LELSQRMLEK 179 (223)
Q Consensus 170 ~~i~~~~~~~ 179 (223)
.+|++.+...
T Consensus 161 ~~ia~~l~~~ 170 (215)
T PTZ00132 161 LWLARRLTND 170 (215)
T ss_pred HHHHHHHhhc
Confidence 9999988754
No 105
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=4.8e-28 Score=183.38 Aligned_cols=148 Identities=24% Similarity=0.357 Sum_probs=126.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC-----CeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA-----GKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+||+++|+.|+|||||++++..+.+...+.+|++.++..+.+.++ +..+.+.+|||+|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888999988877777663 467899999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHc-------------------CCCCeEEEEEeCCCccccccCCHHH----HHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKML-------------------GNDICLTIAGNKIDLEKQRTVMQED----AEKYA 147 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~p~ivv~nK~Dl~~~~~~~~~~----~~~~~ 147 (223)
+|+|||++++.||+.+..|+..+.... ..++|++||+||.|+...+.+..+. ...++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999987642 2468999999999997665544432 44667
Q ss_pred HHhCCcEEEecCCCCC
Q psy8722 148 QSVGAVHFHTSAKMNR 163 (223)
Q Consensus 148 ~~~~~~~~~~Sa~~~~ 163 (223)
...+++.++.++.++.
T Consensus 161 ~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGNAEEINLNCTNGR 176 (202)
T ss_pred HhcCCceEEEecCCcc
Confidence 8899998887776544
No 106
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=4.6e-28 Score=179.57 Aligned_cols=156 Identities=23% Similarity=0.316 Sum_probs=125.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
||+++|++|||||||++++....+.. +.+|.+..+. .+..+ .+.+.+||+||++.+...+..+++++|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999776653 5677766653 33333 4789999999999888888899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC------CcEEEecCCCCCCHHHHH
Q psy8722 97 ITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG------AVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~ 169 (223)
++++.++..+..|+..+.... ..+.|+++++||.|+.+ .+..+++.+++...+ +.++++||++|.|+.++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999999999888876532 24589999999999854 345666666654322 257899999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 170 LELSQRMLEK 179 (223)
Q Consensus 170 ~~i~~~~~~~ 179 (223)
++|.+.+.+.
T Consensus 154 ~~l~~~~~~~ 163 (169)
T cd04158 154 DWLSRQLVAA 163 (169)
T ss_pred HHHHHHHhhc
Confidence 9998877654
No 107
>KOG0393|consensus
Probab=99.96 E-value=6.3e-29 Score=183.31 Aligned_cols=167 Identities=31% Similarity=0.594 Sum_probs=150.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA-GKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
...+|++|||+.++|||+|+-.+..+.|+..+.||....+ ...+.++ ++.+.+.+|||+|+++|.+++...|.++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 4578999999999999999999999999999999998555 5567784 9999999999999999999998899999999
Q ss_pred EEEEECCCHHHHHHHHH-HHHHHHHHcCCCCeEEEEEeCCCccc------------cccCCHHHHHHHHHHhCC-cEEEe
Q psy8722 92 VLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAGNKIDLEK------------QRTVMQEDAEKYAQSVGA-VHFHT 157 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 157 (223)
++||++.++.||+++.. |+.++..++ +++|+++||+|.||.+ ...+..++..+++++.|+ .|+||
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 99999999999999765 999999988 6799999999999963 246778999999999995 89999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHH
Q psy8722 158 SAKMNRGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 158 Sa~~~~~i~~~~~~i~~~~~~~~~ 181 (223)
||++..|+.++|+..+...+...+
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhcccc
Confidence 999999999999999998887644
No 108
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=4.2e-28 Score=180.76 Aligned_cols=157 Identities=18% Similarity=0.294 Sum_probs=122.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|+|||||++++..+.+. .+.+|.+.++.. +..+ .+.+.+||++|++.+...+..+++++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 45799999999999999999999866664 456777776543 3333 478999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHHh-----CCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV-----GAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~ 166 (223)
+|||++++.+++....|+..+... ...++|++||+||.|+.+.. ..+++.+..... .+.++++||++|.|++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 999999999999988877776432 22468999999999986433 233333322211 2246689999999999
Q ss_pred HHHHHHHHHH
Q psy8722 167 EMFLELSQRM 176 (223)
Q Consensus 167 ~~~~~i~~~~ 176 (223)
++|++|.+.+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 109
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=7.4e-28 Score=180.46 Aligned_cols=161 Identities=19% Similarity=0.280 Sum_probs=123.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|+|||||++++..+.+.. +.+|.+.++. .+... .+.+.+||++|++.+...+..+++++|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 557999999999999999999998766654 5677776653 33343 478999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHH-----hCCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS-----VGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 166 (223)
+|||++++.++.....++..+... ...+.|++||+||.|+.+.. ..+++...... ..+.++++||++|.|++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 999999999999888766665332 22458999999999985432 23333222211 11246689999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEKA 180 (223)
Q Consensus 167 ~~~~~i~~~~~~~~ 180 (223)
++|++|.+.+.+.+
T Consensus 168 e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 168 EGLDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998887654
No 110
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=9.1e-28 Score=178.64 Aligned_cols=158 Identities=23% Similarity=0.276 Sum_probs=124.7
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
......++|+++|++|+|||||+++|.+..+ ..+.++.+.. ...+.+++ +.+.+||+||++.+...+..+++++|
T Consensus 9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d 83 (173)
T cd04154 9 KLKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ--IKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTD 83 (173)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 3446679999999999999999999997644 3445666543 33444553 78899999999988888888999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCC
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNR 163 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 163 (223)
++++|||++++.++.....|+..+... ...++|+++|+||+|+.... ..+++.+++. ..+++++++||++|.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 161 (173)
T cd04154 84 ALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGE 161 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence 999999999999999988888776532 33578999999999986533 4455555543 235689999999999
Q ss_pred CHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQ 174 (223)
Q Consensus 164 ~i~~~~~~i~~ 174 (223)
|++++|+++++
T Consensus 162 gi~~l~~~l~~ 172 (173)
T cd04154 162 GLLQGIDWLVD 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 111
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=1.7e-28 Score=180.06 Aligned_cols=152 Identities=18% Similarity=0.299 Sum_probs=117.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|.+|+|||||++++..+.+. .+.+|.+.++. .+... .+.+.+||++|++.+...+..+++++|++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999877775 46677776653 23333 478999999999999888999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHH-HcCCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKK-MLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
|++++.+++.+..|+..+.. ....+.|+++++||.|+.... ..++..+... ..++.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 99999999998887666533 222458999999999985432 2233222221 122356799999999999999
Q ss_pred HHHHH
Q psy8722 170 LELSQ 174 (223)
Q Consensus 170 ~~i~~ 174 (223)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 112
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=2e-27 Score=175.66 Aligned_cols=160 Identities=21% Similarity=0.359 Sum_probs=125.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|||||||+++|..+.+...+. +....+ .....+.+..+.+.+|||+|++.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVP-RVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCC-Ccccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999888865533 332222 233455667789999999999887777777789999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCccccccCC--HHHHHHHHHHhC--CcEEEecCCCCCCHHHHHH
Q psy8722 96 DITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQRTVM--QEDAEKYAQSVG--AVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~ 170 (223)
|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..... .++...++..+. .+++++||+++.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999985 5888887654 479999999999996554321 233334444443 3799999999999999999
Q ss_pred HHHHHHHH
Q psy8722 171 ELSQRMLE 178 (223)
Q Consensus 171 ~i~~~~~~ 178 (223)
.+.+.+++
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887754
No 113
>KOG4252|consensus
Probab=99.95 E-value=5.1e-29 Score=177.53 Aligned_cols=172 Identities=28% Similarity=0.510 Sum_probs=162.6
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
.+.+..||++++|..++||||+|+++..+-|...+.-+++.++..+.+.+.+..+...+||++|++.|......|+++|.
T Consensus 15 ~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaq 94 (246)
T KOG4252|consen 15 TDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQ 94 (246)
T ss_pred hhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcccc
Confidence 44678899999999999999999999999999999999999999999988888889999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
+.++||+-.|+.||+....|++.+....+. +|.++|-||+|+.+..++...+++.+++.+...+|.+|++...|+..+|
T Consensus 95 a~vLVFSTTDr~SFea~~~w~~kv~~e~~~-IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF 173 (246)
T KOG4252|consen 95 ASVLVFSTTDRYSFEATLEWYNKVQKETER-IPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVF 173 (246)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHHHHhcc-CCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHH
Confidence 999999999999999999999999987754 9999999999999988999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 170 LELSQRMLEKAQE 182 (223)
Q Consensus 170 ~~i~~~~~~~~~~ 182 (223)
..+++++.++..+
T Consensus 174 ~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 174 AYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988776
No 114
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=1.8e-26 Score=183.14 Aligned_cols=142 Identities=20% Similarity=0.404 Sum_probs=123.6
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC-------------CeEEEEEEEeCCCcccc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA-------------GKRLNLAIWDTAGQERF 77 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~D~~G~~~~ 77 (223)
+....+||+|+|+.|||||||+++|..+.+...+.+|++.++....+.++ +..+.+.||||+|++.|
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 45678999999999999999999999988888888999998877766664 24688999999999999
Q ss_pred ccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcC------------CCCeEEEEEeCCCccccc---c---CC
Q psy8722 78 HALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG------------NDICLTIAGNKIDLEKQR---T---VM 139 (223)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~Dl~~~~---~---~~ 139 (223)
..++..++++++++|+|||++++.+++.+..|+..+..... .++|++||+||+|+...+ . +.
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~ 176 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence 99999999999999999999999999999999999987631 258999999999996542 2 35
Q ss_pred HHHHHHHHHHhCC
Q psy8722 140 QEDAEKYAQSVGA 152 (223)
Q Consensus 140 ~~~~~~~~~~~~~ 152 (223)
.+++++++.++++
T Consensus 177 ~e~a~~~A~~~g~ 189 (334)
T PLN00023 177 VDAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHHcCC
Confidence 7899999999885
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=5.2e-27 Score=172.40 Aligned_cols=152 Identities=18% Similarity=0.254 Sum_probs=117.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC-CCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK-FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+|+++|++|||||||+++|.... ....+.++.+.... .+.. ..+.+.+|||||++.+...+..+++++|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999999765 34556677765432 2223 3478899999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHc---CCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKML---GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGIEE 167 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 167 (223)
|++++.++.....|+..+.... ..++|+++|+||+|+.... ..++..+... ....+++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999988888887765432 3579999999999986432 2233332221 1123589999999999999
Q ss_pred HHHHHHH
Q psy8722 168 MFLELSQ 174 (223)
Q Consensus 168 ~~~~i~~ 174 (223)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999865
No 116
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=2.5e-27 Score=175.29 Aligned_cols=151 Identities=23% Similarity=0.254 Sum_probs=119.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
+|+++|++|||||||++++.+. +...+.+|.+... ..+..++ +.+.+||+||++.+...+..+++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999866 6666677777643 3444444 788999999999998889999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHH------HHHHHhC--CcEEEecCCCC-----
Q psy8722 97 ITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAE------KYAQSVG--AVHFHTSAKMN----- 162 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~------~~~~~~~--~~~~~~Sa~~~----- 162 (223)
++++.++..+..|+..+..... .++|+++|+||.|+.+.+. ..+.. +++...+ ..++++||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 9999999999999888765422 4689999999999866542 22222 2232233 35677999998
Q ss_pred -CCHHHHHHHHHH
Q psy8722 163 -RGIEEMFLELSQ 174 (223)
Q Consensus 163 -~~i~~~~~~i~~ 174 (223)
.|+.+.|+||.+
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999975
No 117
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=2.4e-26 Score=171.16 Aligned_cols=155 Identities=18% Similarity=0.273 Sum_probs=119.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.++|+++|++|+|||||++++..+.+.. ..++.+.++. .+..+ .+.+.+||+||++.+...+..+++++|+++
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 87 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVI 87 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence 347899999999999999999999776654 4567666543 33344 378999999999998888889999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHH-----HHhCCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYA-----QSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 166 (223)
+|+|++++.++.....|+..+.... ..+.|+++++||+|+... ...++..+.. ...+++++++||+++.|++
T Consensus 88 ~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~ 165 (174)
T cd04153 88 LVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLP 165 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHH
Confidence 9999999999888877666654332 246899999999998553 2333332222 2234578999999999999
Q ss_pred HHHHHHHH
Q psy8722 167 EMFLELSQ 174 (223)
Q Consensus 167 ~~~~~i~~ 174 (223)
++|++|.+
T Consensus 166 e~~~~l~~ 173 (174)
T cd04153 166 EGLDWIAS 173 (174)
T ss_pred HHHHHHhc
Confidence 99999864
No 118
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=7.2e-26 Score=168.43 Aligned_cols=141 Identities=35% Similarity=0.626 Sum_probs=128.4
Q ss_pred CCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHc
Q psy8722 38 DKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML 117 (223)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 117 (223)
+.|.+.+.+|.+.++....+.+++..+.+.||||+|++.+...+..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45677888999999988888899999999999999999999999999999999999999999999999999999987766
Q ss_pred CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 118 GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 118 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
..++|+++|+||+|+...+.+..+++..++..++..|+++||++|.|++++|++|++.+.+
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5678999999999998777788888889999899999999999999999999999988755
No 119
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.94 E-value=3.5e-26 Score=172.54 Aligned_cols=157 Identities=26% Similarity=0.358 Sum_probs=124.7
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.++|+++|++|||||||++++.+..+. .+.++.+... ..+.+++ ..+.+||+||+..+...+..+++++|++
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~i 90 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGI 90 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 466899999999999999999999977663 4556655543 3444555 6788999999998888888899999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHH----------------hCCcE
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS----------------VGAVH 154 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~ 154 (223)
++|+|+++..++.....|+..+.... ..+.|+++++||.|+.. .+..++..+++.. ....+
T Consensus 91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T cd00879 91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV 168 (190)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence 99999999999988887777765433 24689999999999854 4455666666542 22468
Q ss_pred EEecCCCCCCHHHHHHHHHHH
Q psy8722 155 FHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
+++||++++|+.++|++|.+.
T Consensus 169 ~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 169 FMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEeEecCCCChHHHHHHHHhh
Confidence 999999999999999999875
No 120
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.94 E-value=2.5e-26 Score=168.55 Aligned_cols=152 Identities=24% Similarity=0.371 Sum_probs=117.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
+|+++|++|+|||||+++|....+.. ..++.+..+ ..+..+ ..+.+.+||++|++.+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999777653 356666544 233332 34789999999999888888888999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHH------HHhCCcEEEecCCCCCCHHHHH
Q psy8722 97 ITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYA------QSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
++++.++..+..|+..+.+.. ..+.|+++|+||+|+.... ..+++.... ...+.+++++||++|+|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999999999888777765432 2478999999999985432 233332221 1223468999999999999999
Q ss_pred HHHHH
Q psy8722 170 LELSQ 174 (223)
Q Consensus 170 ~~i~~ 174 (223)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 121
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.94 E-value=5.7e-26 Score=167.79 Aligned_cols=152 Identities=24% Similarity=0.309 Sum_probs=117.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC------CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKF------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
||+++|++|+|||||++++..... ...+.++.+..+ ..+.+++ ..+.+|||||++.+...+..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 689999999999999999975322 223344555544 3344444 788999999999998888889999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHH-------hCCcEEEecCCCC
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS-------VGAVHFHTSAKMN 162 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 162 (223)
+++|+|++++.++.....|+..+.+.. ..++|+++++||+|+... ...++..++... .+.+++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999988888888877765532 357899999999998543 334444444432 2357999999999
Q ss_pred CCHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQ 174 (223)
Q Consensus 163 ~~i~~~~~~i~~ 174 (223)
.|+++++++|.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999875
No 122
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.94 E-value=3.5e-25 Score=164.88 Aligned_cols=160 Identities=29% Similarity=0.440 Sum_probs=126.7
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
....+++||+++|+.|||||||++++....... ..||.+... ..+.+++ +.+.+||.+|+..++..|..++.++|
T Consensus 9 ~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~--~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~ 83 (175)
T PF00025_consen 9 KSKKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI--EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNAD 83 (175)
T ss_dssp TTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE--EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTES
T ss_pred cccCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc--ceeeeCc--EEEEEEeccccccccccceeeccccc
Confidence 345889999999999999999999998655443 466766554 4455566 67899999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHHh------CCcEEEecCCCC
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV------GAVHFHTSAKMN 162 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~ 162 (223)
++|||+|.++.+.+......+..+... .-.+.|+++++||.|+.+. ...+++....... .+.++.+||.+|
T Consensus 84 ~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g 161 (175)
T PF00025_consen 84 GIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTG 161 (175)
T ss_dssp EEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTT
T ss_pred eeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCC
Confidence 999999999988888777655554432 2257999999999998653 3556666554332 234788999999
Q ss_pred CCHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRM 176 (223)
Q Consensus 163 ~~i~~~~~~i~~~~ 176 (223)
+|+.+.++||.+++
T Consensus 162 ~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 162 EGVDEGLEWLIEQI 175 (175)
T ss_dssp BTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcC
Confidence 99999999999875
No 123
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.94 E-value=1.5e-25 Score=164.27 Aligned_cols=151 Identities=21% Similarity=0.297 Sum_probs=113.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
||+++|++++|||||++++....+. .+.++.+.++. .+... .+.+.+|||||++.+...+..++..+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 6899999999999999999866654 34566665543 23333 4789999999999998888999999999999999
Q ss_pred CCCHHHHHHHHHHHHHH-HHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCHHHHHH
Q psy8722 97 ITDEDSFEKVKNWVKEL-KKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
++++.++.....|+..+ ......++|+++++||+|+.+.. ...+..+... ..+.+++++||+++.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 99998887766655443 32222468999999999986433 2233222221 1124699999999999999999
Q ss_pred HHHH
Q psy8722 171 ELSQ 174 (223)
Q Consensus 171 ~i~~ 174 (223)
+|++
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9874
No 124
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.94 E-value=8.4e-26 Score=165.47 Aligned_cols=151 Identities=23% Similarity=0.302 Sum_probs=118.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
||+++|++|+|||||++++.+... ..+.++.+... ..+.+.+ +.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999997763 34455665544 3334443 789999999999988889999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHH-----hCCcEEEecCCCCCCHHHHHH
Q psy8722 97 ITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS-----VGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
++++.++.....|+..+.... ..+.|+++++||+|+.... ..++..+.... ...+++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999999888877765533 3578999999999986543 23333333322 345799999999999999999
Q ss_pred HHHH
Q psy8722 171 ELSQ 174 (223)
Q Consensus 171 ~i~~ 174 (223)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=3.2e-25 Score=166.50 Aligned_cols=157 Identities=24% Similarity=0.273 Sum_probs=121.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.++|+++|.+|||||||++++.+..+.. +.+|.+... ..+.+++ +.+.+||+||+..+...+..++.++|++
T Consensus 14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~i 88 (184)
T smart00178 14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGI 88 (184)
T ss_pred ccccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 3667999999999999999999999766542 344544432 3334444 7789999999998888889999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHHh------------CCcEEEec
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV------------GAVHFHTS 158 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~S 158 (223)
++|+|++++.++.....|+..+... ...++|+++++||.|+.. .+..+++.+..... ...++.+|
T Consensus 89 i~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~S 166 (184)
T smart00178 89 VYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCS 166 (184)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEee
Confidence 9999999999998888777765432 224689999999999854 34555555443211 22488999
Q ss_pred CCCCCCHHHHHHHHHHH
Q psy8722 159 AKMNRGIEEMFLELSQR 175 (223)
Q Consensus 159 a~~~~~i~~~~~~i~~~ 175 (223)
|+++.|++++++||.++
T Consensus 167 a~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 167 VVRRMGYGEGFKWLSQY 183 (184)
T ss_pred cccCCChHHHHHHHHhh
Confidence 99999999999999865
No 126
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.93 E-value=6.7e-25 Score=162.21 Aligned_cols=156 Identities=19% Similarity=0.232 Sum_probs=109.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc---------ccccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL---------GPIYYRM 87 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~---------~~~~~~~ 87 (223)
+|+++|++|+|||||+++|.+..+.....+..+.+.....+.. ..+.+.+|||||....... .......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 7999999999999999999977665433333333332223333 3478999999997421110 0011233
Q ss_pred CCEEEEEEECCCHHHH--HHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCH
Q psy8722 88 SNGAVLVYDITDEDSF--EKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (223)
+|++++|+|+++..++ +....|+..+.... .+.|+++|+||.|+.....+ .+..++....+.+++++||+++.|+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDL--SEIEEEEELEGEEVLKISTLTEEGV 156 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhH--HHHHHhhhhccCceEEEEecccCCH
Confidence 6899999999987643 55667877776543 36899999999998654332 2245555556678999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRML 177 (223)
Q Consensus 166 ~~~~~~i~~~~~ 177 (223)
+++|+++.+.++
T Consensus 157 ~~l~~~l~~~~~ 168 (168)
T cd01897 157 DEVKNKACELLL 168 (168)
T ss_pred HHHHHHHHHHhC
Confidence 999999998763
No 127
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=7.6e-25 Score=163.61 Aligned_cols=154 Identities=20% Similarity=0.267 Sum_probs=113.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC-------CCCCCccc------cceeEEEEEEE--E---CCeEEEEEEEeCCCccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK-------FNEKHITT------LQASFLNKKLN--I---AGKRLNLAIWDTAGQERFH 78 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~-------~~~~~~~~------~~~~~~~~~~~--~---~~~~~~~~i~D~~G~~~~~ 78 (223)
+|+++|++++|||||+++|.... +...+.++ .+.++...... + ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998532 11122221 22333322222 2 5667889999999999998
Q ss_pred cccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCc---EE
Q psy8722 79 ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV---HF 155 (223)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~ 155 (223)
..+..+++.+|++|+|+|+++..++.....|.... ..++|+++|+||+|+.... ......++++.++++ ++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 88888999999999999999876666666665432 2368999999999985432 123344566666663 89
Q ss_pred EecCCCCCCHHHHHHHHHHHH
Q psy8722 156 HTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 156 ~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
++||++|.|++++|++|.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998764
No 128
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=2.9e-24 Score=156.32 Aligned_cols=158 Identities=25% Similarity=0.416 Sum_probs=129.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
.+||+++|++|+|||||++++....+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999997778778788888888777777777778899999999998888888888999999999
Q ss_pred EECCCH-HHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 95 YDITDE-DSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 95 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
+|.... .++.... .|...+......+.|+++++||.|+.... ...+....+......+++++||.++.|+.++|++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999887 6666655 67777766654478999999999986543 33344444444455689999999999999999886
Q ss_pred H
Q psy8722 173 S 173 (223)
Q Consensus 173 ~ 173 (223)
-
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 3
No 129
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=1.2e-24 Score=161.17 Aligned_cols=157 Identities=19% Similarity=0.172 Sum_probs=112.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc----ccccccccc---ccCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER----FHALGPIYY---RMSN 89 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~---~~~d 89 (223)
+|+++|.+|+|||||+++|.+........+..+.+.....+..++. ..+.+|||||... ...+...++ ..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999865443222222233222223333332 4789999999642 222333333 4599
Q ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHH-hCCcEEEecCCCCCCH
Q psy8722 90 GAVLVYDITDE-DSFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQS-VGAVHFHTSAKMNRGI 165 (223)
Q Consensus 90 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 165 (223)
++++|+|++++ .+++.+..|++.+..... .+.|+++|+||+|+...... .+....+... .+.+++++|++++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999999 789999999998877542 36899999999998654432 3444455555 3678999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 166 EEMFLELSQR 175 (223)
Q Consensus 166 ~~~~~~i~~~ 175 (223)
+++|++|.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 130
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.93 E-value=8.5e-25 Score=159.56 Aligned_cols=151 Identities=26% Similarity=0.339 Sum_probs=119.8
Q ss_pred EEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEEC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDI 97 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 97 (223)
|+++|++|+|||||++++.+..+...+.++.+..+.. +..++ +.+.+||+||++.+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7999999999999999999998888888888876643 33333 7899999999999988888999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHH-----HHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 98 TDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYA-----QSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 98 ~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
++..++.....|+..+... ...++|+++++||.|+..... .++..... .....+++++|++++.|+++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence 9999998887777765442 224689999999999865432 22222121 112357899999999999999999
Q ss_pred HHH
Q psy8722 172 LSQ 174 (223)
Q Consensus 172 i~~ 174 (223)
|.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 875
No 131
>PRK15494 era GTPase Era; Provisional
Probab=99.92 E-value=3.7e-25 Score=180.30 Aligned_cols=191 Identities=17% Similarity=0.277 Sum_probs=141.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCC-CCccccceeEEEEEEEECCeEEEEEEEeCCCccc-cccccc-------c
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNE-KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER-FHALGP-------I 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~-------~ 83 (223)
.+.++|+++|.+|||||||+|+|.+..+.. ...+.++.+.....+..++ .++.||||||... +..+.. .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 566799999999999999999999776642 2223333444444455555 4689999999743 222211 2
Q ss_pred ccccCCEEEEEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC--CcEEEecCC
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG--AVHFHTSAK 160 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 160 (223)
.+.++|++++|+|..+ ++.... .|+..+... +.|.++|+||+|+... ...+..+++...+ ..++.+||+
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 3678999999999765 344443 355555432 4577889999998543 2445555655544 478999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc----cccccceeeecCCCCCCCC
Q psy8722 161 MNRGIEEMFLELSQRMLEKAQEFDLAKASELSRR----GSMRRNVVVVEDEDLPTSS 213 (223)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 213 (223)
+|.|++++|++|.+.+.+....++.+...+.+.+ +.+|++....+.+++||+.
T Consensus 200 tg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~ 256 (339)
T PRK15494 200 SGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKL 256 (339)
T ss_pred CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceE
Confidence 9999999999999999998888888888877766 6799999999999999985
No 132
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=1.1e-23 Score=162.30 Aligned_cols=172 Identities=36% Similarity=0.563 Sum_probs=142.0
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
..+||+++|+.|+|||||+++|....+...+.++.+..+........+..+.+.+|||+|++.+...+..++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34999999999999999999999999999999998888877777776668899999999999999999999999999999
Q ss_pred EEECCC-HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc------------cCCHHHHHHHHHHh---CCcEEEe
Q psy8722 94 VYDITD-EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR------------TVMQEDAEKYAQSV---GAVHFHT 157 (223)
Q Consensus 94 v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~~ 157 (223)
|+|..+ ..+++....|...+........|+++++||+|+.... .............. ...++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 999999 5566667789999988876679999999999996553 22223322222222 2348999
Q ss_pred cCC--CCCCHHHHHHHHHHHHHHHHHHHHH
Q psy8722 158 SAK--MNRGIEEMFLELSQRMLEKAQEFDL 185 (223)
Q Consensus 158 Sa~--~~~~i~~~~~~i~~~~~~~~~~~~~ 185 (223)
|+. ++.++.++|..+...+.........
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 193 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEIEKLVL 193 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhhhhhhh
Confidence 999 9999999999999999876655443
No 133
>KOG0073|consensus
Probab=99.92 E-value=7.6e-24 Score=149.02 Aligned_cols=163 Identities=23% Similarity=0.299 Sum_probs=127.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.+++++|+++|..|+||||++++|.+.. .....||.+.+ .+++.+++ +.+.+||.+|+...++.|+.||..+|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~--Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQ--IKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCcccee--eEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 4679999999999999999999998655 33345666654 45555555 7899999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHH-HHHcCCCCeEEEEEeCCCccccccCC----HHHHHHHHHHhCCcEEEecCCCCCCHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKEL-KKMLGNDICLTIAGNKIDLEKQRTVM----QEDAEKYAQSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (223)
|+|+|.+++..++.....++.+ ....-.+.|++|++||.|+...-... .-+..++++....+.+.||+.+|+++.
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence 9999999998887766544332 22222468999999999986432111 122344556667889999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEK 179 (223)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (223)
+.+.|++..+.++
T Consensus 168 ~gidWL~~~l~~r 180 (185)
T KOG0073|consen 168 EGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999874
No 134
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.92 E-value=4.4e-24 Score=158.64 Aligned_cols=156 Identities=21% Similarity=0.286 Sum_probs=117.8
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccC
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMS 88 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (223)
..+..+.++|+++|++|+|||||++++.+..+. ...++.+..+ ..+..++ ..+.+||++|+..+...+..+++++
T Consensus 8 ~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~ 82 (173)
T cd04155 8 LRKSSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENT 82 (173)
T ss_pred hhccCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCC
Confidence 334456899999999999999999999976553 2345555433 3344454 6788999999988888888889999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC--------cEEEecC
Q psy8722 89 NGAVLVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA--------VHFHTSA 159 (223)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa 159 (223)
|++++|+|+.+..++.....|+..+... ...++|+++++||.|+.... ..++. ...+++ +++++||
T Consensus 83 ~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i---~~~l~~~~~~~~~~~~~~~Sa 157 (173)
T cd04155 83 DCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEI---AEALNLHDLRDRTWHIQACSA 157 (173)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHH---HHHcCCcccCCCeEEEEEeEC
Confidence 9999999999998888877766655432 23468999999999985432 22222 333332 3689999
Q ss_pred CCCCCHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQ 174 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~ 174 (223)
++|+|++++|+||++
T Consensus 158 ~~~~gi~~~~~~l~~ 172 (173)
T cd04155 158 KTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999999975
No 135
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=3.8e-25 Score=175.49 Aligned_cols=189 Identities=14% Similarity=0.098 Sum_probs=134.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA--------LGPIYYRM 87 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~ 87 (223)
+|+++|.+|||||||+|+|++.... ....+.++.+........++ ..+.+|||||...... ....++..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999976653 23334344433222222233 4688999999653211 12345789
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHH
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIE 166 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 166 (223)
+|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+..... ..+....++...++ +++.+||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999876654 334444433 3689999999999853222 22334444454554 78999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhh----ccccccceeeecCCCCCCCC
Q psy8722 167 EMFLELSQRMLEKAQEFDLAKASELSR----RGSMRRNVVVVEDEDLPTSS 213 (223)
Q Consensus 167 ~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 213 (223)
+++++|.+.+.+....++.+...+.+. ++.+|++.....++++||+.
T Consensus 154 ~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~ 204 (270)
T TIGR00436 154 FLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSV 204 (270)
T ss_pred HHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceE
Confidence 999999998877666666666555554 47899999999999999986
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.92 E-value=2.6e-24 Score=164.13 Aligned_cols=158 Identities=20% Similarity=0.187 Sum_probs=114.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc--c------cccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA--L------GPIY 84 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--~------~~~~ 84 (223)
++.++|+|+|++|||||||++++.+..+.....+..+.+.....+.+.+. ..+.+|||||...... . ....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999976644333333333333444444443 3688999999732110 0 0112
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG 164 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (223)
+.++|++++|+|++++.++.....|...+......++|+++|+||+|+...... ...+...+.+++++||+++.|
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~g 192 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGEG 192 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCCC
Confidence 568999999999999988888888888877665556899999999998544321 134445567899999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRM 176 (223)
Q Consensus 165 i~~~~~~i~~~~ 176 (223)
+.+++++|..++
T Consensus 193 i~~l~~~L~~~~ 204 (204)
T cd01878 193 LDELLEAIEELL 204 (204)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 137
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=9.6e-24 Score=155.15 Aligned_cols=152 Identities=18% Similarity=0.144 Sum_probs=106.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC---CCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED---KFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
+.|+++|++|+|||||+++|.+. .+...+.++.+.+.....+.+.+ ...+.+|||||++.+......+++++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 36899999999999999999853 33333334445544444455542 357899999999988766667788999999
Q ss_pred EEEECCC---HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc--CCHHHHHHHHHH---hCCcEEEecCCCCCC
Q psy8722 93 LVYDITD---EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT--VMQEDAEKYAQS---VGAVHFHTSAKMNRG 164 (223)
Q Consensus 93 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~ 164 (223)
+|+|+++ ..+.+.+. .+... ...|+++++||+|+..... ...++..+.+.. .+.+++++||+++.|
T Consensus 80 ~V~d~~~~~~~~~~~~~~----~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHLE----ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHHH----HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999987 33333322 22222 1248999999999864321 112344444444 357899999999999
Q ss_pred HHHHHHHHHH
Q psy8722 165 IEEMFLELSQ 174 (223)
Q Consensus 165 i~~~~~~i~~ 174 (223)
++++++.+..
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 138
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=1.5e-23 Score=169.92 Aligned_cols=161 Identities=21% Similarity=0.154 Sum_probs=119.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc----cccccc---ccccCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF----HALGPI---YYRMSN 89 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~---~~~~~d 89 (223)
.|+|||.+|||||||+++|+.........+.++.......+.+.+ ...+.+||+||...- ..+... .+..++
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 689999999999999999996544433344445554444555532 146889999996421 122223 345789
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEE 167 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (223)
++++|+|+++.++++.+..|..++..... .++|+++|+||+|+........+....++...+.+++++||++++|+++
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~e 318 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDE 318 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHH
Confidence 99999999988889999999999887643 3689999999999865544333444555556678899999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 168 MFLELSQRMLE 178 (223)
Q Consensus 168 ~~~~i~~~~~~ 178 (223)
++++|.+.+.+
T Consensus 319 L~~~L~~~l~~ 329 (335)
T PRK12299 319 LLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHh
Confidence 99999987754
No 139
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.91 E-value=5.5e-24 Score=153.15 Aligned_cols=134 Identities=22% Similarity=0.208 Sum_probs=99.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc-----ccccccccccccCCEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE-----RFHALGPIYYRMSNGA 91 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~ 91 (223)
||+++|++|+|||||+++|.+..+. +.++.+.++ .. .+|||||.. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-------~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-------ND-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-------cC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999866542 233332222 11 588999973 2333323 47899999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~ 170 (223)
++|||++++.++.. ..|...+ ..|+++++||+|+.. +....++.+++++..+. +++++||+++.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999988754 3444322 249999999999854 33456677788877776 799999999999999998
Q ss_pred HHH
Q psy8722 171 ELS 173 (223)
Q Consensus 171 ~i~ 173 (223)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 140
>KOG0070|consensus
Probab=99.91 E-value=3.2e-23 Score=149.47 Aligned_cols=162 Identities=18% Similarity=0.265 Sum_probs=129.7
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
-...++.+|+++|--+|||||++.+|..++.... .||+|...... .+. ++.+.+||.+|+++++..|..|+++.+
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v--~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~ 86 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETV--EYK--NISFTVWDVGGQEKLRPLWKHYFQNTQ 86 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEE--EEc--ceEEEEEecCCCcccccchhhhccCCc
Confidence 3468899999999999999999999986666544 78888766444 444 488999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-----cEEEecCCCCC
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-----VHFHTSAKMNR 163 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-----~~~~~Sa~~~~ 163 (223)
++|||+|.+|++.+...+.-+..+-.... .+.|+++++||.|+++.- +..++.+......+ .+..++|.+|+
T Consensus 87 ~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al--s~~ei~~~L~l~~l~~~~w~iq~~~a~~G~ 164 (181)
T KOG0070|consen 87 GLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL--SAAEITNKLGLHSLRSRNWHIQSTCAISGE 164 (181)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC--CHHHHHhHhhhhccCCCCcEEeeccccccc
Confidence 99999999999988888775555544433 579999999999987654 44555444443333 35569999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRMLE 178 (223)
Q Consensus 164 ~i~~~~~~i~~~~~~ 178 (223)
|+.+.++|+.+.+..
T Consensus 165 GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 165 GLYEGLDWLSNNLKK 179 (181)
T ss_pred cHHHHHHHHHHHHhc
Confidence 999999999988754
No 141
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=1.1e-22 Score=146.72 Aligned_cols=153 Identities=45% Similarity=0.781 Sum_probs=121.6
Q ss_pred EECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECC
Q psy8722 20 LLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDIT 98 (223)
Q Consensus 20 viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 98 (223)
++|++|+|||||++++..... .....++. .++........+....+.+||+||+..+......+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999997766 44444555 6776777777777889999999998888777788889999999999999
Q ss_pred CHHHHHHHHHHH-HHHHHHcCCCCeEEEEEeCCCccccccCCHHH-HHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 99 DEDSFEKVKNWV-KELKKMLGNDICLTIAGNKIDLEKQRTVMQED-AEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 99 ~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
++.++..+..|. .........+.|+++++||+|+.......... ..........+++++|+.++.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999999888873 33333445679999999999986554332222 4455566678999999999999999999875
No 142
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.90 E-value=1.2e-22 Score=148.42 Aligned_cols=147 Identities=20% Similarity=0.229 Sum_probs=111.5
Q ss_pred EECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--ccCCEE
Q psy8722 20 LLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL------GPIYY--RMSNGA 91 (223)
Q Consensus 20 viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~ 91 (223)
|+|++|+|||||++++.+..+.....++.+.+.....+.+++ ..+.+|||||+..+... ...++ .++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999997766555566667766666666766 46889999998766542 34445 489999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
++|+|+.+..... .|...+.. .++|+++++||+|+.+...+. .....+...++.+++++|+.++.|+.+++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIK-IDLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999999865432 33333333 368999999999996554433 3345777778899999999999999999999
Q ss_pred HHHH
Q psy8722 172 LSQR 175 (223)
Q Consensus 172 i~~~ 175 (223)
+.+.
T Consensus 152 l~~~ 155 (158)
T cd01879 152 IAEL 155 (158)
T ss_pred HHHH
Confidence 8775
No 143
>PRK04213 GTP-binding protein; Provisional
Probab=99.90 E-value=1.5e-23 Score=159.59 Aligned_cols=154 Identities=25% Similarity=0.245 Sum_probs=104.1
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCC-----------ccccccc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG-----------QERFHAL 80 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~ 80 (223)
+...++|+++|++|+|||||+++|.+..+.....++.+.. ...+... .+.+||||| ++.+...
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHHHHHHH
Confidence 3457899999999999999999999777765555555443 2333333 488999999 3445444
Q ss_pred cccccc----cCCEEEEEEECCCHHHH-H---------HHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHH
Q psy8722 81 GPIYYR----MSNGAVLVYDITDEDSF-E---------KVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKY 146 (223)
Q Consensus 81 ~~~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 146 (223)
+..++. .++++++|+|.+..... + .-..+...+. ..++|+++|+||+|+.... .+...++
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~ 153 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEI 153 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHH
Confidence 444443 45788888887643211 0 0011122222 2468999999999985433 3445566
Q ss_pred HHHhCC---------cEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 147 AQSVGA---------VHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 147 ~~~~~~---------~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
+..++. +++++||++| |+++++++|.+.+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 666664 4799999999 999999999987654
No 144
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=1.6e-22 Score=165.13 Aligned_cols=154 Identities=21% Similarity=0.192 Sum_probs=114.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc---------ccccccccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE---------RFHALGPIY 84 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~ 84 (223)
..++|+++|.+|+|||||+|+|++........++.+.+.....+.+.+. ..+.+|||+|.. .|.... ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 4489999999999999999999977655444555666666777777432 478899999962 122211 24
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG 164 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (223)
+.++|++++|+|++++.+++.+..|...+......+.|+++|+||+|+.... ..... .....+++.+||+++.|
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~-~~~~~~~i~iSAktg~G 339 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-----RIERL-EEGYPEAVFVSAKTGEG 339 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH-----hHHHH-HhCCCCEEEEEccCCCC
Confidence 6889999999999999888888777777766544568999999999985422 11111 12224689999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 165 IEEMFLELSQR 175 (223)
Q Consensus 165 i~~~~~~i~~~ 175 (223)
+++++++|.+.
T Consensus 340 I~eL~~~I~~~ 350 (351)
T TIGR03156 340 LDLLLEAIAER 350 (351)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 145
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.89 E-value=1.8e-22 Score=149.13 Aligned_cols=156 Identities=18% Similarity=0.174 Sum_probs=108.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA-GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
.|+++|++|+|||||+++|....+.....++.+.+.....+... +....+.+|||||++.+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999777766544555555444444443 13467889999999888888888889999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC-HHHHHHHHH------HhCCcEEEecCCCCCCHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM-QEDAEKYAQ------SVGAVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~ 168 (223)
|+++........ .+..+.. .++|+++|+||+|+....... ......+.. ....+++++|++++.|+.++
T Consensus 82 d~~~~~~~~~~~-~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTIE-AIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHHH-HHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 998843222111 1122222 368999999999986432111 111111111 11357999999999999999
Q ss_pred HHHHHHHH
Q psy8722 169 FLELSQRM 176 (223)
Q Consensus 169 ~~~i~~~~ 176 (223)
+++|.+..
T Consensus 158 ~~~l~~~~ 165 (168)
T cd01887 158 LEAILLLA 165 (168)
T ss_pred HHHHHHhh
Confidence 99998754
No 146
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.89 E-value=8.1e-23 Score=154.73 Aligned_cols=149 Identities=18% Similarity=0.188 Sum_probs=104.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhh--CCCCCCC------------ccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE--DKFNEKH------------ITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG 81 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 81 (223)
-+|+++|.+++|||||+++|.. +.+...+ ..+.+.++......+....+.+.+|||||++.|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3899999999999999999986 4544332 1223444444444444555789999999999999888
Q ss_pred ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc-CCHHHHHHHHH-------HhCCc
Q psy8722 82 PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT-VMQEDAEKYAQ-------SVGAV 153 (223)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~~ 153 (223)
..+++++|++++|+|+.+.. +.....|+..+.. .++|+++++||+|+...+. ...++..++.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 2233333333332 3689999999999854322 11234444442 23678
Q ss_pred EEEecCCCCCCHHHH
Q psy8722 154 HFHTSAKMNRGIEEM 168 (223)
Q Consensus 154 ~~~~Sa~~~~~i~~~ 168 (223)
++++||++|.|+.+.
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999887543
No 147
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.89 E-value=5e-22 Score=160.90 Aligned_cols=159 Identities=20% Similarity=0.192 Sum_probs=115.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc----ccccccc---cccC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF----HALGPIY---YRMS 88 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~ 88 (223)
..|+|+|.+|||||||+++|+.........+.++.......+.+.+ ...+.+||+||.... ..+...+ +..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 4799999999999999999996544333333334443344444443 256889999996422 1233333 3469
Q ss_pred CEEEEEEECCCH---HHHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCC
Q psy8722 89 NGAVLVYDITDE---DSFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNR 163 (223)
Q Consensus 89 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (223)
+++++|+|+++. .+++.+..|..++..... .++|+++|+||+|+..... ..+..+++...++.+++++||+++.
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence 999999999986 678888888888776532 3689999999999865432 2344555666677899999999999
Q ss_pred CHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRM 176 (223)
Q Consensus 164 ~i~~~~~~i~~~~ 176 (223)
|+++++++|.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998754
No 148
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.89 E-value=1.1e-22 Score=146.51 Aligned_cols=148 Identities=18% Similarity=0.230 Sum_probs=107.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--cc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA------LGPIYY--RM 87 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~ 87 (223)
|+|+++|.||+|||||+|+|++........|+.+.+.....+.+.+ ..+.++|+||...... ....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999998887777778888888888888888 4567779999543222 122233 68
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHH
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEE 167 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (223)
.|++|+|+|+++.+.- ..+...+. ..++|+++++||+|+...+... -+...+.+.+++|++.+||++++|+++
T Consensus 79 ~D~ii~VvDa~~l~r~---l~l~~ql~---e~g~P~vvvlN~~D~a~~~g~~-id~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLERN---LYLTLQLL---ELGIPVVVVLNKMDEAERKGIE-IDAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHHH---HHHHHHHH---HTTSSEEEEEETHHHHHHTTEE-E-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHHH---HHHHHHHH---HcCCCEEEEEeCHHHHHHcCCE-ECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 9999999999874322 12222222 2479999999999986554432 346778888999999999999999999
Q ss_pred HHHHH
Q psy8722 168 MFLEL 172 (223)
Q Consensus 168 ~~~~i 172 (223)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98765
No 149
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=4e-22 Score=139.16 Aligned_cols=114 Identities=31% Similarity=0.556 Sum_probs=88.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC--CCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFN--EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
||+|+|++|+|||||+++|.+..+. ..+..+.+.++.............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999977776 22234444455555666677766799999999998888877779999999999
Q ss_pred EECCCHHHHHHHHHH---HHHHHHHcCCCCeEEEEEeCCC
Q psy8722 95 YDITDEDSFEKVKNW---VKELKKMLGNDICLTIAGNKID 131 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~p~ivv~nK~D 131 (223)
||++++.+++.+..+ +..+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 999999999998654 5555543 34599999999998
No 150
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=7.9e-22 Score=165.43 Aligned_cols=154 Identities=19% Similarity=0.222 Sum_probs=118.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc--------ccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL--------GPI 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~ 83 (223)
.+.++|+++|++|+|||||+|+|++... .....++++.++....+.+++ ..+.+|||||...+... ...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 4578999999999999999999996543 234456777787777777877 45789999997654332 235
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCC
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNR 163 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (223)
+++++|++++|+|++++.+++.. |+..+.. .+.|+++|+||+|+... +...++..++.+++.+|+++ .
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~ 346 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-L 346 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-C
Confidence 67899999999999998877664 6555432 36899999999998543 12345666778899999997 6
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRMLEKA 180 (223)
Q Consensus 164 ~i~~~~~~i~~~~~~~~ 180 (223)
|+.++|+.+.+.+.+..
T Consensus 347 gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 347 KIKALVDLLTQKINAFY 363 (442)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999887654
No 151
>COG1159 Era GTPase [General function prediction only]
Probab=99.89 E-value=8.5e-23 Score=158.21 Aligned_cols=195 Identities=16% Similarity=0.145 Sum_probs=142.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA--------LGPI 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~ 83 (223)
.+.--|+++|.||||||||+|++++.... .+..+.+++......+..+ ..++.++||||-..... ....
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 45667999999999999999999976664 4555555555444444444 46788899999432222 2234
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCC
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMN 162 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (223)
.+..+|+++||+|+++...- .....++.+.. .+.|+++++||+|.........+....+.....+ ..+.+||.+|
T Consensus 82 sl~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred HhccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence 56889999999999984322 11122333333 3579999999999866544223333333344444 6899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc----cccccceeeecCCCCCCCC
Q psy8722 163 RGIEEMFLELSQRMLEKAQEFDLAKASELSRR----GSMRRNVVVVEDEDLPTSS 213 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 213 (223)
.|++.+.+.+...+.+...-++.+...+.+.+ +.+|++....+++++|||.
T Consensus 158 ~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv 212 (298)
T COG1159 158 DNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSV 212 (298)
T ss_pred CCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceE
Confidence 99999999999999999888888888887776 8899999999999999985
No 152
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.89 E-value=3e-22 Score=148.91 Aligned_cols=154 Identities=21% Similarity=0.210 Sum_probs=107.4
Q ss_pred EECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC-CeEEEEEEEeCCCcccc----cccc---ccccccCCEE
Q psy8722 20 LLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA-GKRLNLAIWDTAGQERF----HALG---PIYYRMSNGA 91 (223)
Q Consensus 20 viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~----~~~~---~~~~~~~d~~ 91 (223)
++|++|||||||+++|.+........+..+.+.....+.++ + ..+.+|||||.... .... ...++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 58999999999999999765422222333333333334444 4 56889999996421 2222 2346789999
Q ss_pred EEEEECCCH------HHHHHHHHHHHHHHHHcC-------CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEec
Q psy8722 92 VLVYDITDE------DSFEKVKNWVKELKKMLG-------NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTS 158 (223)
Q Consensus 92 i~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (223)
++|+|+.+. .++..+..|...+..... .+.|+++|+||+|+..................+.+++++|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 999999988 577787777777765432 3689999999999865543332222344445567899999
Q ss_pred CCCCCCHHHHHHHHHHH
Q psy8722 159 AKMNRGIEEMFLELSQR 175 (223)
Q Consensus 159 a~~~~~i~~~~~~i~~~ 175 (223)
++++.|++++++++...
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999988764
No 153
>KOG1673|consensus
Probab=99.88 E-value=5.2e-22 Score=138.59 Aligned_cols=167 Identities=27% Similarity=0.539 Sum_probs=146.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..-.+||.++|++..|||||+-.+..+.+.+++..+.|..+..+++.+.+..+.+.+||.+|++++..+.+....++-++
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence 35689999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc--ccc---CCHHHHHHHHHHhCCcEEEecCCCCCCHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK--QRT---VMQEDAEKYAQSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (223)
+|+||++.+.+...+.+|+...+...+.-+|+ +||+|.|+-- +.+ .....+..+++-++++.+.+|+..+.|+.
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~ 175 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ 175 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence 99999999999999999999998877666665 7899999611 111 11244667888899999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEK 179 (223)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (223)
.+|..+..++..-
T Consensus 176 KIFK~vlAklFnL 188 (205)
T KOG1673|consen 176 KIFKIVLAKLFNL 188 (205)
T ss_pred HHHHHHHHHHhCC
Confidence 9999888777654
No 154
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.88 E-value=1.5e-21 Score=142.35 Aligned_cols=146 Identities=21% Similarity=0.220 Sum_probs=107.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL--------GPIYYR 86 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~ 86 (223)
++|+++|++|+|||||++++.+.... ....++.+.++....+...+ ..+.+|||||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 68999999999999999999966542 23344555555555555554 56889999997654322 224567
Q ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHH
Q psy8722 87 MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (223)
.+|++++|+|++++.+......|.. ..+.|+++++||+|+...... .....+.+++++||+++.|+.
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 8999999999998777666544332 346899999999998654432 344456789999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 167 EMFLELSQRM 176 (223)
Q Consensus 167 ~~~~~i~~~~ 176 (223)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999987753
No 155
>PRK00089 era GTPase Era; Reviewed
Probab=99.88 E-value=1.9e-22 Score=162.00 Aligned_cols=194 Identities=16% Similarity=0.142 Sum_probs=130.4
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCC-CCccccceeEEEEEEEECCeEEEEEEEeCCCccccc--------cccccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNE-KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH--------ALGPIY 84 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~ 84 (223)
+.-.|+++|++|||||||+|+|++..... ...+.++..........+ ...+.+|||||..... ......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 45679999999999999999999766532 222322222222222222 2678999999964332 122335
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC-CcEEEecCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG-AVHFHTSAKMNR 163 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 163 (223)
+.++|++++|+|+++.... .....+..+. ..+.|+++|+||+|+............++....+ .+++.+||+++.
T Consensus 82 ~~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred HhcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 6889999999999883211 1122222222 2358999999999986332222344445555444 478999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----ccccccceeeecCCCCCCCC
Q psy8722 164 GIEEMFLELSQRMLEKAQEFDLAKASELSR----RGSMRRNVVVVEDEDLPTSS 213 (223)
Q Consensus 164 ~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 213 (223)
|++++++++.+.+.+....++.+...+.+. .+.+|++....+++++||+.
T Consensus 158 gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~ 211 (292)
T PRK00089 158 NVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSV 211 (292)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceE
Confidence 999999999998876665555554444444 36689999999999999984
No 156
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=7.8e-22 Score=167.73 Aligned_cols=172 Identities=19% Similarity=0.227 Sum_probs=120.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc----------cccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE----------RFHALG 81 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~ 81 (223)
...++|+++|.+|+|||||+|+|++... .....++++.+.....+.+++. .+.+|||||.. .+....
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence 3568999999999999999999996654 3455677777776667777775 45799999953 222221
Q ss_pred -ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC--CHHHHHH-HHHHhCCcEEEe
Q psy8722 82 -PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV--MQEDAEK-YAQSVGAVHFHT 157 (223)
Q Consensus 82 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~-~~~~~~~~~~~~ 157 (223)
..+++.+|++++|+|++++.++..+. ++..+.. .++|+++|+||+|+...... ..++..+ +.....++++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 23568999999999999988777664 3333332 47899999999998643210 1111221 222233689999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8722 158 SAKMNRGIEEMFLELSQRMLEKAQEFDLAKASE 190 (223)
Q Consensus 158 Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~ 190 (223)
||++|.|++++|+.+.+.+.............+
T Consensus 363 SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~ 395 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALESWDTRIPTGRLNA 395 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 999999999999999988766555544444333
No 157
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.88 E-value=1.4e-21 Score=164.82 Aligned_cols=149 Identities=21% Similarity=0.238 Sum_probs=114.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL--------GPIY 84 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 84 (223)
..++|+++|++|+|||||+|+|.+... .....++++.++....+.+++ ..+.+|||||...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 458999999999999999999996553 344456677777777777776 56789999997654332 2236
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG 164 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (223)
+.++|++++|+|++++.+++....|.. ..+.|+++|+||+|+....... ...+.+++++||++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 788999999999999877765544433 3468999999999986443221 33456799999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRMLE 178 (223)
Q Consensus 165 i~~~~~~i~~~~~~ 178 (223)
+++++++|.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 158
>KOG0075|consensus
Probab=99.88 E-value=2.7e-22 Score=138.73 Aligned_cols=156 Identities=25% Similarity=0.316 Sum_probs=125.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
..++.+.++|-.++|||||+|.+..+.+.+.-.|+.|..... +....+.+.+||.+|+..|.++|+.|++.+++++
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWerycR~v~aiv 93 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIV 93 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHHHHhhcCcEEE
Confidence 357889999999999999999998888887778888876533 4456688999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHH-HHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC--------cEEEecCCCCC
Q psy8722 93 LVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA--------VHFHTSAKMNR 163 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~~~ 163 (223)
||+|+.+++.+...++ +...+.+..-.++|++|+|||.|+.++- .... +...+|. ..|.+|+++..
T Consensus 94 Y~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL--~~~~---li~rmgL~sitdREvcC~siScke~~ 168 (186)
T KOG0075|consen 94 YVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL--SKIA---LIERMGLSSITDREVCCFSISCKEKV 168 (186)
T ss_pred EEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc--cHHH---HHHHhCccccccceEEEEEEEEcCCc
Confidence 9999999988877765 3334444444689999999999986543 2222 3334442 47889999999
Q ss_pred CHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRML 177 (223)
Q Consensus 164 ~i~~~~~~i~~~~~ 177 (223)
|++.+..||+++-.
T Consensus 169 Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 169 NIDITLDWLIEHSK 182 (186)
T ss_pred cHHHHHHHHHHHhh
Confidence 99999999998654
No 159
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.87 E-value=8.5e-22 Score=148.90 Aligned_cols=160 Identities=21% Similarity=0.144 Sum_probs=103.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC----CC---CCCCccccceeEEEEEEEEC------------CeEEEEEEEeCCCccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED----KF---NEKHITTLQASFLNKKLNIA------------GKRLNLAIWDTAGQER 76 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~----~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~ 76 (223)
+||+++|++++|||||+++|... .+ ..+..++.+.+.....+.+. +....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999862 11 11122233333333333332 3357889999999876
Q ss_pred cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc--CCHHHHHHHHH------
Q psy8722 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT--VMQEDAEKYAQ------ 148 (223)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~------ 148 (223)
+..........+|++++|+|+.+.........|. +.... +.|+++++||+|+..... ...++..+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5433334456789999999998754333332222 11222 579999999999853221 11222222211
Q ss_pred -HhCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 149 -SVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 149 -~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
..+++++.+||+++.|++++++++.+++...
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1356899999999999999999999887643
No 160
>KOG3883|consensus
Probab=99.87 E-value=6e-21 Score=133.00 Aligned_cols=172 Identities=24% Similarity=0.323 Sum_probs=138.4
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCC--CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc-cccccccccc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKF--NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF-HALGPIYYRM 87 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~ 87 (223)
.--+..||+++|..++|||++++.+..... .....+|+...+....-.-.+..-.++++||.|...+ ..+-..|+.-
T Consensus 5 kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~ 84 (198)
T KOG3883|consen 5 KMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQF 84 (198)
T ss_pred hhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhcc
Confidence 334568999999999999999999983333 3344566655554433333455558999999996655 5566788899
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHH
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (223)
+|++++||+..+++||+.+.-+...+.+... ..+|++|++||+|+.+++.+..+-+..+++...+..+++++.+...+-
T Consensus 85 aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ 164 (198)
T KOG3883|consen 85 ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLY 164 (198)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhh
Confidence 9999999999999999998877777766543 468999999999999899998899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEKAQE 182 (223)
Q Consensus 167 ~~~~~i~~~~~~~~~~ 182 (223)
+.|..++..+.+...+
T Consensus 165 epf~~l~~rl~~pqsk 180 (198)
T KOG3883|consen 165 EPFTYLASRLHQPQSK 180 (198)
T ss_pred hHHHHHHHhccCCccc
Confidence 9999999887665433
No 161
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.87 E-value=3e-21 Score=167.27 Aligned_cols=157 Identities=22% Similarity=0.253 Sum_probs=115.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCC-------CCCCCcc------ccceeEEEEE--EEE---CCeEEEEEEEeCCCccc
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDK-------FNEKHIT------TLQASFLNKK--LNI---AGKRLNLAIWDTAGQER 76 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~i~D~~G~~~ 76 (223)
--||+++|+.++|||||+++|+... +...+.. ..|.++.... +.+ ++..+.+.||||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3489999999999999999998532 2222211 1233333322 323 46668999999999999
Q ss_pred cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC---c
Q psy8722 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA---V 153 (223)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~ 153 (223)
|...+..++..+|++|+|+|+++..+......|..... .++|+++|+||+|+.... ..+...++...+++ .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 98888899999999999999999766666666654443 368999999999986432 12333455566665 3
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 154 HFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 154 ~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
++.+||++|.|++++|++|.+.+.
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCC
Confidence 799999999999999999987663
No 162
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=1.2e-20 Score=156.64 Aligned_cols=158 Identities=21% Similarity=0.229 Sum_probs=115.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc----cccccccc---cccCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER----FHALGPIY---YRMSN 89 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d 89 (223)
.|+|+|.+|||||||+++|++........+.++.......+.+.+ ...+.+||+||... ...+...+ +..++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 899999999999999999996554333334444444334444441 24688999999532 22233334 34589
Q ss_pred EEEEEEECCCH---HHHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCC
Q psy8722 90 GAVLVYDITDE---DSFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG 164 (223)
Q Consensus 90 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (223)
++++|+|+++. .+++....|..++..... .++|++||+||+|+.. ..+...++...++.+++.+||+++.|
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tgeG 314 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQG 314 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCCC
Confidence 99999999864 677788888888877543 3689999999999843 23445666666778899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRMLEK 179 (223)
Q Consensus 165 i~~~~~~i~~~~~~~ 179 (223)
+++++++|.+.+...
T Consensus 315 I~eL~~~L~~~l~~~ 329 (424)
T PRK12297 315 LDELLYAVAELLEET 329 (424)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999998877554
No 163
>PRK11058 GTPase HflX; Provisional
Probab=99.87 E-value=4.3e-21 Score=160.18 Aligned_cols=157 Identities=20% Similarity=0.193 Sum_probs=114.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc--ccccc------ccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF--HALGP------IYYRM 87 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~~------~~~~~ 87 (223)
.+|+++|++|||||||+|+|++........++.+.+.....+.+.+. ..+.+|||+|.... ...+. ..+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999976655545556666666666666542 25789999997331 22222 23588
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCc-EEEecCCCCCCHH
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIE 166 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~ 166 (223)
+|++++|+|++++.++..+..|...+......++|+++|+||+|+..... .... ....+.+ ++.+||++|.|++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence 99999999999998888876666666655445789999999999853211 1111 1123445 4889999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLE 178 (223)
Q Consensus 167 ~~~~~i~~~~~~ 178 (223)
+++++|.+.+..
T Consensus 352 eL~e~I~~~l~~ 363 (426)
T PRK11058 352 LLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHhhh
Confidence 999999988754
No 164
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=2.5e-21 Score=141.18 Aligned_cols=146 Identities=18% Similarity=0.169 Sum_probs=100.9
Q ss_pred EEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc--------ccccccccCC
Q psy8722 19 VLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA--------LGPIYYRMSN 89 (223)
Q Consensus 19 ~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d 89 (223)
+++|.+|+|||||+++|..... .....+..+.+........++ ..+.+|||||...+.. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 4799999999999999996542 122233444444444455555 5788999999876543 2344678899
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIEEM 168 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~ 168 (223)
++++|+|..+..+.... .+...+.. .+.|+++|+||+|+...... .......+. +++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999875443332 12222222 25899999999998654322 233344565 7899999999999999
Q ss_pred HHHHHHH
Q psy8722 169 FLELSQR 175 (223)
Q Consensus 169 ~~~i~~~ 175 (223)
|+++++.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999875
No 165
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=1.3e-20 Score=159.05 Aligned_cols=164 Identities=18% Similarity=0.202 Sum_probs=113.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc----------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG---------- 81 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~---------- 81 (223)
...++|+++|.+|+|||||+|+|++... .....++++.+.....+..++. .+.+|||||..+.....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 4568999999999999999999996542 3344455555555555556664 67899999975443221
Q ss_pred -ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHH-HHHHH----hCCcEE
Q psy8722 82 -PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAE-KYAQS----VGAVHF 155 (223)
Q Consensus 82 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~ 155 (223)
..+++.+|++|+|+|+.++.+..... ++..+.. .+.|+++|+||+|+.... ...++.. ++... .+++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceE
Confidence 23578999999999999887765543 3333322 368999999999986211 1122222 22222 236899
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8722 156 HTSAKMNRGIEEMFLELSQRMLEKAQEF 183 (223)
Q Consensus 156 ~~Sa~~~~~i~~~~~~i~~~~~~~~~~~ 183 (223)
++||++|.|+.++|+++.+.+.......
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~~~~~i 350 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYENANRRI 350 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhcCcC
Confidence 9999999999999999998876554443
No 166
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.86 E-value=4e-21 Score=144.37 Aligned_cols=154 Identities=18% Similarity=0.169 Sum_probs=108.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCcc----------------ccceeEEEEEEEECCeEEEEEEEeCCCccccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHIT----------------TLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL 80 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 80 (223)
+|+++|.+|+|||||+++|........... +.+........... ...+.+|||||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 589999999999999999987666543211 12222222233333 467899999999888888
Q ss_pred cccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC--CHHHHHHHHHH---------
Q psy8722 81 GPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV--MQEDAEKYAQS--------- 149 (223)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~--------- 149 (223)
+..+++.+|++++|+|+.++.+... ..++..+.. .+.|+++++||+|+...... ..+...+....
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8888899999999999988654332 233333333 46899999999998642211 12333333333
Q ss_pred -----hCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 150 -----VGAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 150 -----~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
...+++++||+++.|+++++.++...+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 246789999999999999999998875
No 167
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.86 E-value=1.2e-20 Score=162.81 Aligned_cols=154 Identities=18% Similarity=0.191 Sum_probs=114.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+..+|+++|+.++|||||+++|....+.....++++.++....+.+++. ..+.||||||++.|..++...+..+|++|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 45679999999999999999999987777665666666665555555443 26889999999999988888889999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC---------CcEEEecCCCCC
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG---------AVHFHTSAKMNR 163 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~ 163 (223)
+|+|+++....+.... +......++|+++++||+|+.+. ..+...+.+...+ .+++++||++|.
T Consensus 164 LVVda~dgv~~qT~e~----i~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 164 LVVAADDGVMPQTIEA----ISHAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred EEEECCCCCCHhHHHH----HHHHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 9999987432222222 22222246899999999998543 2334444433332 468999999999
Q ss_pred CHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQ 174 (223)
Q Consensus 164 ~i~~~~~~i~~ 174 (223)
|++++|++|..
T Consensus 237 GI~eLl~~I~~ 247 (587)
T TIGR00487 237 GIDELLDMILL 247 (587)
T ss_pred ChHHHHHhhhh
Confidence 99999999873
No 168
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.86 E-value=4.2e-21 Score=140.58 Aligned_cols=141 Identities=14% Similarity=0.092 Sum_probs=99.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccc----cccccccccCCEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH----ALGPIYYRMSNGAV 92 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~~~~~~d~~i 92 (223)
+|+++|++|+|||||+|++.+... .. ..+. .+.+... .+|||||..... ......+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~~-~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-LA-RKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-cC-ccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 799999999999999999875421 11 1121 1122222 269999963222 11123368999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC--cEEEecCCCCCCHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA--VHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|+++..++ +..|+..+ ..+.|+++++||+|+... ..+...+++...++ +++++||++++|++++|+
T Consensus 70 ~v~d~~~~~s~--~~~~~~~~----~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESR--LPAGLLDI----GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCcccc--cCHHHHhc----cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 99999988765 22344332 235789999999998542 35667777778875 899999999999999999
Q ss_pred HHHHHHHHH
Q psy8722 171 ELSQRMLEK 179 (223)
Q Consensus 171 ~i~~~~~~~ 179 (223)
.+.+.+...
T Consensus 141 ~l~~~~~~~ 149 (158)
T PRK15467 141 YLASLTKQE 149 (158)
T ss_pred HHHHhchhh
Confidence 988776443
No 169
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=8.5e-21 Score=161.42 Aligned_cols=154 Identities=19% Similarity=0.247 Sum_probs=110.8
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc--------cccccccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER--------FHALGPIY 84 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 84 (223)
...+|+|+|.+|||||||+|+|++... .....++.+.+.....+.+++. .+.+|||||.+. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 447899999999999999999996553 3345566666666666666664 578999999763 22234456
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNR 163 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 163 (223)
++.+|++|+|+|+++..++.. ..|...+.. .++|+++|+||+|+.... .+. .++. ..++ .++++||++|.
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~-~~~~-~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADA-AALW-SLGLGEPHPVSALHGR 185 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhh-HHHH-hcCCCCeEEEEcCCCC
Confidence 789999999999998755432 334444443 368999999999985421 112 2222 2343 45799999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRMLE 178 (223)
Q Consensus 164 ~i~~~~~~i~~~~~~ 178 (223)
|++++|++|.+.+.+
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999988754
No 170
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=1.3e-20 Score=155.64 Aligned_cols=184 Identities=18% Similarity=0.154 Sum_probs=126.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc----cc---ccccccCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA----LG---PIYYRMSN 89 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~~---~~~~~~~d 89 (223)
.|+|+|.+|||||||+|+|++........+.++.......+...+. ..+.++||||...-.. +. ...+..++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 7999999999999999999966554444555555544445555431 3578899999543111 11 12467899
Q ss_pred EEEEEEECC---CHHHHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhC--CcEEEecCCCC
Q psy8722 90 GAVLVYDIT---DEDSFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG--AVHFHTSAKMN 162 (223)
Q Consensus 90 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~ 162 (223)
++++|+|++ +...++....|+..+..... .+.|+++|+||+|+.....+ .+...++....+ .+++.+||+++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence 999999998 45667777788887776532 35799999999998543322 334445555544 36899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc----ccccccee
Q psy8722 163 RGIEEMFLELSQRMLEKAQEFDLAKASELSRR----GSMRRNVV 202 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 202 (223)
.|++++++.|.+.+.+....++.+...+.+.+ +.+|++..
T Consensus 319 ~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE~~~ 362 (390)
T PRK12298 319 LGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLE 362 (390)
T ss_pred cCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHHHhh
Confidence 99999999999988776555554444433332 44555543
No 171
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=4.1e-20 Score=136.73 Aligned_cols=155 Identities=18% Similarity=0.223 Sum_probs=103.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA-----------LGP 82 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~ 82 (223)
.++|+++|++|+|||||++++.+.... ....++.+.......+..++ ..+.+|||||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 579999999999999999999865432 23334444444444455555 3477999999653311 012
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHH-HHHHHHHh----CCcEEEe
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQED-AEKYAQSV----GAVHFHT 157 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~----~~~~~~~ 157 (223)
..+..+|++++|+|..++.+..... ++..+. ..+.|+++++||+|+........+. ...+...+ ..+++.+
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLIL---EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH---hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 2457899999999999887654432 222222 2358999999999986543222222 22233333 3589999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q psy8722 158 SAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 158 Sa~~~~~i~~~~~~i~~~ 175 (223)
||+++.|+.++++.+.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999988764
No 172
>KOG0071|consensus
Probab=99.85 E-value=2.4e-20 Score=128.09 Aligned_cols=158 Identities=20% Similarity=0.330 Sum_probs=121.1
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..++++|+++|-.++||||++..|..+... ...||+|+.+ ..+.+.+ +.+.+||.+|+++.+.+|..||....++
T Consensus 14 ~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvGFnv--etVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqgl 88 (180)
T KOG0071|consen 14 GNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGL 88 (180)
T ss_pred CcccceEEEEecccCCceehhhHHhcCCCc-ccccccceeE--EEEEeee--eEEeeeeccCchhhhHHHHhhccCCceE
Confidence 367999999999999999999999855443 3357777655 3444444 8899999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHH-HHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-----cEEEecCCCCCCH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKEL-KKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-----VHFHTSAKMNRGI 165 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-----~~~~~Sa~~~~~i 165 (223)
|||+|..+....+..+.-+..+ ...--...+++|.+||.|+.+.. ..+++..+...-.+ -+..+++.+++|+
T Consensus 89 IFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL 166 (180)
T KOG0071|consen 89 IFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGL 166 (180)
T ss_pred EEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhH
Confidence 9999999886666665422222 22112468999999999997765 56777776654433 2456889999999
Q ss_pred HHHHHHHHHHH
Q psy8722 166 EEMFLELSQRM 176 (223)
Q Consensus 166 ~~~~~~i~~~~ 176 (223)
.+.|.|+.+.+
T Consensus 167 ~eglswlsnn~ 177 (180)
T KOG0071|consen 167 KEGLSWLSNNL 177 (180)
T ss_pred HHHHHHHHhhc
Confidence 99999998764
No 173
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=4e-20 Score=155.49 Aligned_cols=162 Identities=19% Similarity=0.135 Sum_probs=113.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc----cccc---ccccccC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF----HALG---PIYYRMS 88 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~---~~~~~~~ 88 (223)
..|+|||.+|||||||+|+|+.........+.++.......+.+.+ ..+.+||+||.... ..+. -..+..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 4899999999999999999996554444445555555555566655 57889999995321 1111 1235679
Q ss_pred CEEEEEEECCC----HHHHHHHHHHHHHHHHHcC-----------CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCc
Q psy8722 89 NGAVLVYDITD----EDSFEKVKNWVKELKKMLG-----------NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV 153 (223)
Q Consensus 89 d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~-----------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (223)
+++|+|+|+++ +..+..+..|..++..... .+.|++||+||+|+.+.... .+.........+.+
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~ 316 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGWP 316 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCCe
Confidence 99999999975 2355556656655554321 35899999999998654332 22333344455789
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 154 HFHTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 154 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
++.+||+++.|+++++.+|.+.+...+
T Consensus 317 Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 317 VFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999999999886654
No 174
>KOG4423|consensus
Probab=99.85 E-value=2.8e-23 Score=149.15 Aligned_cols=168 Identities=33% Similarity=0.521 Sum_probs=146.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeE-EEEEEEeCCCccccccccccccccCCEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKR-LNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..-++++|+|..|+|||+++.+++...++..+..+++.++.-+...+++.. +++++||+.|++++..+...|++.+++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 557899999999999999999999999999999999999988887777655 4889999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCccccccC-CHHHHHHHHHHhCC-cEEEecCCCCCCH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDLEKQRTV-MQEDAEKYAQSVGA-VHFHTSAKMNRGI 165 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 165 (223)
.+|||++...+|+....|.+.+..... ..+|+++..||+|++..... ......++++++|+ ..+++|++.+.++
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni 182 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNI 182 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccCh
Confidence 999999999999999999999876542 35778999999998544322 34778889999998 6999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRMLEKA 180 (223)
Q Consensus 166 ~~~~~~i~~~~~~~~ 180 (223)
.|+-..+++.++..-
T Consensus 183 ~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 183 PEAQRELVEKILVND 197 (229)
T ss_pred hHHHHHHHHHHHhhc
Confidence 999999999887664
No 175
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.85 E-value=2.8e-20 Score=161.11 Aligned_cols=153 Identities=21% Similarity=0.197 Sum_probs=116.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhh---CCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE---DKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
++|+++|+.++|||||+++|++ ..++++...+++.++....+..++ ..+.+||+||++.|...+...+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 5799999999999999999985 344455566777777666666666 67899999999999888888889999999
Q ss_pred EEEECCC---HHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccccC--CHHHHHHHHHHh----CCcEEEecCCCC
Q psy8722 93 LVYDITD---EDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRTV--MQEDAEKYAQSV----GAVHFHTSAKMN 162 (223)
Q Consensus 93 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~ 162 (223)
+|+|+++ +.+++.+. .+.. .++| +++++||+|+.+...+ ..+++.+++... +.+++.+||++|
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999998 44444432 2222 2567 9999999998654322 223455555554 468999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRML 177 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~ 177 (223)
.|++++++.|.+.+.
T Consensus 152 ~GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 152 QGIGELKKELKNLLE 166 (581)
T ss_pred CCchhHHHHHHHHHH
Confidence 999999988876543
No 176
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.85 E-value=2.4e-20 Score=141.24 Aligned_cols=163 Identities=18% Similarity=0.161 Sum_probs=105.6
Q ss_pred CCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc----------cc
Q psy8722 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE----------RF 77 (223)
Q Consensus 8 ~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~ 77 (223)
+.......++|+++|++|+|||||+++|.+..+.....++.+.+........ ...+.+|||||.. .+
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~ 93 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKW 93 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHH
Confidence 3444567789999999999999999999976654444444444332222222 2578999999942 22
Q ss_pred cccccccccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC--CHHHHHHHHHHhCC
Q psy8722 78 HALGPIYYRM---SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV--MQEDAEKYAQSVGA 152 (223)
Q Consensus 78 ~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~ 152 (223)
......++.. .+++++|+|..++.+.... .+...+.. .++|+++++||.|+....+. ..+.+.+.......
T Consensus 94 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~ 169 (196)
T PRK00454 94 QKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDD 169 (196)
T ss_pred HHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 2333344443 4678889998775433221 11122222 36899999999998543221 12334444444467
Q ss_pred cEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 153 VHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 153 ~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
+++++|++++.|++++++.|...+.
T Consensus 170 ~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 170 EVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 8999999999999999999887654
No 177
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.84 E-value=4.3e-20 Score=160.11 Aligned_cols=146 Identities=21% Similarity=0.240 Sum_probs=111.5
Q ss_pred CCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--ccCCEEEE
Q psy8722 22 GEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL------GPIYY--RMSNGAVL 93 (223)
Q Consensus 22 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~ 93 (223)
|++|+|||||+|++++......+.++.+.+.....+.+++. .+.+|||||++.+... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999987766666777777776666767664 5789999998876543 22232 47899999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
|+|.++.+. ...+... ....++|+++++||+|+.+.+.+. .+.+++++.++++++++||++|.|++++++++.
T Consensus 79 VvDat~ler---~l~l~~q---l~~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQ---LLELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchh---hHHHHHH---HHhcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999987432 1222222 223478999999999986555443 456788888999999999999999999999998
Q ss_pred HHH
Q psy8722 174 QRM 176 (223)
Q Consensus 174 ~~~ 176 (223)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 764
No 178
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.84 E-value=2.2e-20 Score=142.24 Aligned_cols=159 Identities=18% Similarity=0.194 Sum_probs=99.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC---CCCCccccceeEEEEEEEEC---------------------------C----
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKF---NEKHITTLQASFLNKKLNIA---------------------------G---- 61 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~---- 61 (223)
++|+++|+.|+|||||+..+..... ........+.........+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 5899999999999999999974311 11111111111111111110 1
Q ss_pred eEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC--C
Q psy8722 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV--M 139 (223)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~ 139 (223)
....+.||||||++.+.......+.++|++++|+|+.++.........+..+... ...|+++++||+|+...... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1157899999999888777777778899999999998742111111122222221 12478999999998643211 1
Q ss_pred HHHHHHHHHHh---CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 140 QEDAEKYAQSV---GAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 140 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
.++..+++... +.+++.+||++|.|+++++++|.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 23334444432 56799999999999999999988654
No 179
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.84 E-value=7.4e-20 Score=161.58 Aligned_cols=154 Identities=19% Similarity=0.228 Sum_probs=113.5
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+..+|+++|+.++|||||+++|....+......+++.+.....+.+++ ..+.||||||++.|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 45778999999999999999999987766655555555555555555665 5688999999999999888888999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHH-------HHHHhC--CcEEEecCCCC
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEK-------YAQSVG--AVHFHTSAKMN 162 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~~~ 162 (223)
|+|+|+++......... +......++|++|++||+|+.+.. .+.+.. +...++ ++++++||++|
T Consensus 365 ILVVdAddGv~~qT~e~----i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG 437 (787)
T PRK05306 365 VLVVAADDGVMPQTIEA----INHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG 437 (787)
T ss_pred EEEEECCCCCCHhHHHH----HHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence 99999988422222222 222223468999999999985432 222211 122333 68999999999
Q ss_pred CCHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQ 174 (223)
Q Consensus 163 ~~i~~~~~~i~~ 174 (223)
.|++++|++|..
T Consensus 438 ~GI~eLle~I~~ 449 (787)
T PRK05306 438 EGIDELLEAILL 449 (787)
T ss_pred CCchHHHHhhhh
Confidence 999999999875
No 180
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.84 E-value=8.3e-20 Score=134.06 Aligned_cols=155 Identities=20% Similarity=0.151 Sum_probs=101.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCc-cccceeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccc
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHI-TTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA--------LGPIYY 85 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~ 85 (223)
..+|+++|++|+|||||++++.+........ +..+...... ........+.+|||||...... .....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRG--IYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEE--EEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 5789999999999999999998765432211 1111111111 1222336788999999654322 223457
Q ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC-CcEEEecCCCCCC
Q psy8722 86 RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG-AVHFHTSAKMNRG 164 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 164 (223)
..+|++++|+|+.++.+ .....+...+... +.|+++++||+|+........+....+....+ .+++.+|++++.|
T Consensus 81 ~~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 81 KDVDLVLFVVDASEPIG-EGDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN 156 (168)
T ss_pred HhCCEEEEEEECCCccC-chHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence 88999999999998721 1112223333332 57999999999986433333344445555443 5889999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 165 IEEMFLELSQR 175 (223)
Q Consensus 165 i~~~~~~i~~~ 175 (223)
++++++.|.+.
T Consensus 157 ~~~l~~~l~~~ 167 (168)
T cd04163 157 VDELLEEIVKY 167 (168)
T ss_pred hHHHHHHHHhh
Confidence 99999998765
No 181
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.84 E-value=5.8e-20 Score=160.94 Aligned_cols=156 Identities=16% Similarity=0.205 Sum_probs=112.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEE--EEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNK--KLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
.+..+|+++|+.++|||||+++|....+......+.+.+.... .+..++....+.||||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 4667999999999999999999997766655444444433222 23333455789999999999999998889999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHH-------HHHhC--CcEEEecCCC
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKY-------AQSVG--AVHFHTSAKM 161 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa~~ 161 (223)
+|+|+|+++.........| ......++|+++++||+|+.... .+.+.+. ...++ ++++++||++
T Consensus 322 aILVVDA~dGv~~QT~E~I----~~~k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAI----NYIQAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEECcCCCChhhHHHH----HHHHhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 9999999884322222222 11223468999999999986432 2222222 22233 5899999999
Q ss_pred CCCHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQR 175 (223)
Q Consensus 162 ~~~i~~~~~~i~~~ 175 (223)
|.|+++++++|...
T Consensus 395 G~GIdeLle~I~~l 408 (742)
T CHL00189 395 GTNIDKLLETILLL 408 (742)
T ss_pred CCCHHHHHHhhhhh
Confidence 99999999988765
No 182
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.84 E-value=1.2e-19 Score=138.11 Aligned_cols=117 Identities=24% Similarity=0.307 Sum_probs=86.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccC-CEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMS-NGAVLVY 95 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~v~ 95 (223)
+|+++|++|+|||+|+++|....+...+.++ ............+....+.+||+||+.++...+..+++++ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999987776554333 2322222222223346789999999999988888888998 9999999
Q ss_pred ECCCH-HHHHHHHHHHHHHHH---HcCCCCeEEEEEeCCCccc
Q psy8722 96 DITDE-DSFEKVKNWVKELKK---MLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 96 d~~~~-~s~~~~~~~~~~~~~---~~~~~~p~ivv~nK~Dl~~ 134 (223)
|+.+. .++..+..|+..+.. ....++|+++++||.|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99997 677776665544322 1235799999999999854
No 183
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.84 E-value=4e-20 Score=138.23 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=96.4
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc----------cccccc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE----------RFHALG 81 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~ 81 (223)
....++|+++|++|+|||||+|++.+..+.....++.+.+.....+..++ .+.+|||||.. .+....
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 46788999999999999999999997654333334443333333333333 58899999943 222333
Q ss_pred ccccc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc--cCCHHHHHHHHHHhC--CcE
Q psy8722 82 PIYYR---MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR--TVMQEDAEKYAQSVG--AVH 154 (223)
Q Consensus 82 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~--~~~ 154 (223)
..+++ .++++++|+|++++.+.... .++..+.. .++|+++++||+|+.... ....+++++.+...+ .++
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v 167 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV 167 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence 34444 35899999999885444443 22233332 368999999999985332 112344455555543 479
Q ss_pred EEecCCCCCCHH
Q psy8722 155 FHTSAKMNRGIE 166 (223)
Q Consensus 155 ~~~Sa~~~~~i~ 166 (223)
+.+||++|+|++
T Consensus 168 ~~~Sa~~g~gi~ 179 (179)
T TIGR03598 168 QLFSSLKKTGID 179 (179)
T ss_pred EEEECCCCCCCC
Confidence 999999999973
No 184
>KOG0096|consensus
Probab=99.83 E-value=3.1e-20 Score=133.97 Aligned_cols=164 Identities=27% Similarity=0.499 Sum_probs=142.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
...++++++|..|.||||++++++...|...+.+|.|.........-+...+.+..|||.|++.+..+...++-++.++|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 46899999999999999999999999999999999999887776655555699999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
++||+..+-++.++..|...+.+.++. +|++++|||.|..... .......+-...++.+|++|++.+-|...-|-|+
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~N-iPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L 164 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVREN-IPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL 164 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhcC-CCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHH
Confidence 999999999999999999999888764 9999999999975443 1233344556677899999999999999999999
Q ss_pred HHHHHHH
Q psy8722 173 SQRMLEK 179 (223)
Q Consensus 173 ~~~~~~~ 179 (223)
...+...
T Consensus 165 arKl~G~ 171 (216)
T KOG0096|consen 165 ARKLTGD 171 (216)
T ss_pred hhhhcCC
Confidence 9988443
No 185
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.83 E-value=1.6e-19 Score=156.69 Aligned_cols=160 Identities=23% Similarity=0.235 Sum_probs=113.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC--CCCC-----CC------ccccceeEEE--EEEEE---CCeEEEEEEEeCCCc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED--KFNE-----KH------ITTLQASFLN--KKLNI---AGKRLNLAIWDTAGQ 74 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~--~~~~-----~~------~~~~~~~~~~--~~~~~---~~~~~~~~i~D~~G~ 74 (223)
++--||+++|+.++|||||+.+|+.. .+.. .. ....+.++.. ..+.+ ++..+.+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 34459999999999999999999842 2111 10 0112222222 22222 455689999999999
Q ss_pred cccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCc-
Q psy8722 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV- 153 (223)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 153 (223)
.+|...+..++..+|++|+|+|+++.........|..... .++|+++|+||+|+.... ......++...+++.
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~ 158 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDA 158 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCc
Confidence 9998888889999999999999998755555555544322 368999999999985432 122234455556654
Q ss_pred --EEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 154 --HFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 154 --~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
++.+||++|.|+.+++++|.+.+..
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 8999999999999999999887643
No 186
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.83 E-value=5.8e-20 Score=138.41 Aligned_cols=159 Identities=19% Similarity=0.201 Sum_probs=105.7
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCC------------------CccccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEK------------------HITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
+.++|+++|+.++|||||+++|+....... .....+.......+........+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 568999999999999999999983332111 11222333333444311333577888999999
Q ss_pred ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC-CHHHHH-HHHHHhC--
Q psy8722 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV-MQEDAE-KYAQSVG-- 151 (223)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~-~~~~~~~-- 151 (223)
.|.......+..+|++|+|+|+.+..... ....+..+.. .++|+++++||+|+...+.. ..++.. .+.+..+
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeecccccccc-cccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 98888878889999999999998753322 2222333333 36889999999998622110 112222 3333332
Q ss_pred ----CcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 152 ----AVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 152 ----~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
++++.+||.+|.|+.++++.|.+.+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 4799999999999999999888765
No 187
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=3.1e-19 Score=150.94 Aligned_cols=162 Identities=19% Similarity=0.216 Sum_probs=110.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCC-CCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc-----------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDK-FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL----------- 80 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------- 80 (223)
...++|+++|.+|+|||||+|+|++.. ......++++.+.....+..++ ..+.+|||||..+....
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 457999999999999999999999543 3444456666665555555555 45678999995432111
Q ss_pred cccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHH----hCCcEEE
Q psy8722 81 GPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS----VGAVHFH 156 (223)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~ 156 (223)
...+++.+|++|+|+|+.++.+..... +...+.. .+.|+++++||+|+..... ..+...++... ..+++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCEEE
Confidence 123568899999999999876655543 2222322 3689999999999863321 11111122222 2468999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHH
Q psy8722 157 TSAKMNRGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 157 ~Sa~~~~~i~~~~~~i~~~~~~~~~ 181 (223)
+||+++.|+.++++.+.+.+.....
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~~~~ 348 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYENANR 348 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999887655443
No 188
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=2.9e-19 Score=151.11 Aligned_cols=146 Identities=18% Similarity=0.231 Sum_probs=105.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER--------FHALGPIYYR 86 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 86 (223)
.+|+++|.+|||||||+|+|.+... .....++.+.+.....+.+++ ..+.+|||||.+. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999999999996553 233355666666666666766 6789999999876 1222345678
Q ss_pred cCCEEEEEEECCCHHHHH--HHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCC
Q psy8722 87 MSNGAVLVYDITDEDSFE--KVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNR 163 (223)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 163 (223)
.+|++|+|+|+.++.+.. .+..|+. . .+.|+++|+||+|+... .+...++ ..+++ .++++||.+|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~---~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILR---K---SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999998853332 2333433 2 26899999999996432 1222333 34566 48999999999
Q ss_pred CHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQ 174 (223)
Q Consensus 164 ~i~~~~~~i~~ 174 (223)
|+.++++.+..
T Consensus 149 gv~~l~~~I~~ 159 (435)
T PRK00093 149 GIGDLLDAILE 159 (435)
T ss_pred CHHHHHHHHHh
Confidence 99999999887
No 189
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.82 E-value=2.5e-19 Score=151.27 Aligned_cols=151 Identities=22% Similarity=0.230 Sum_probs=107.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc--------cccccccccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE--------RFHALGPIYYRM 87 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~ 87 (223)
+|+++|.+|||||||+|+|.+... .....++.+.+.....+.+++ ..+.+|||||.. .+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999996553 233456666666666666766 458899999963 233344556789
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHH
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIE 166 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 166 (223)
+|++++|+|..+..+.... .+...+++ .++|+++|+||+|+...... ..+ +..+++ +++.+||.+|.|+.
T Consensus 79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence 9999999999875433321 22223333 26899999999998644321 122 345666 79999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLE 178 (223)
Q Consensus 167 ~~~~~i~~~~~~ 178 (223)
++++.+.+.+..
T Consensus 150 ~ll~~i~~~l~~ 161 (429)
T TIGR03594 150 DLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHhcCc
Confidence 999998877643
No 190
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.82 E-value=8.7e-19 Score=155.43 Aligned_cols=154 Identities=14% Similarity=0.188 Sum_probs=113.9
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc----------cc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG----------PI 83 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------~~ 83 (223)
+.++|+++|++|+|||||+|++++........++.+.+.....+..+ ...+.+||+||...+.... ..
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~--~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT--DHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC--ceEEEEEECCCccccccccccccHHHHHHHH
Confidence 35799999999999999999999766555545655555444444443 4678899999987664321 12
Q ss_pred c--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC
Q psy8722 84 Y--YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM 161 (223)
Q Consensus 84 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (223)
+ ...+|++++|+|+++.+.. ..|...+.+ .++|+++++||+|+.+.+.+ ..+.+++.+.++++++.+|+.+
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~ 152 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTR 152 (772)
T ss_pred HHhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeec
Confidence 2 2478999999999885432 223333433 36899999999998655444 4567788889999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRM 176 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~ 176 (223)
++|++++++.+.+..
T Consensus 153 g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 153 GRGIEALKLAIDRHQ 167 (772)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999998887754
No 191
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.82 E-value=3e-19 Score=129.85 Aligned_cols=151 Identities=18% Similarity=0.150 Sum_probs=102.3
Q ss_pred EECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc-------ccccccCCEE
Q psy8722 20 LLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG-------PIYYRMSNGA 91 (223)
Q Consensus 20 viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~~~~~~~d~~ 91 (223)
++|++|+|||||++++.+.... .....+.+............ ...+.+||+||........ ..++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999865444 33333333333333333321 3578999999977654333 3467899999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHH---HHHHHHHHhCCcEEEecCCCCCCHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQE---DAEKYAQSVGAVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (223)
++|+|..+........ |..... ..+.|+++++||.|+......... .........+.+++++|++++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999987665554 233332 247899999999998554322111 112223334568999999999999999
Q ss_pred HHHHHHH
Q psy8722 169 FLELSQR 175 (223)
Q Consensus 169 ~~~i~~~ 175 (223)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998765
No 192
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=6.4e-19 Score=156.50 Aligned_cols=161 Identities=19% Similarity=0.193 Sum_probs=112.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc----------cccc-c
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER----------FHAL-G 81 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~ 81 (223)
..++|+++|.+|+|||||+|+|++... .....++++.+.....+.+++.. +.+|||||..+ +... .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 458999999999999999999996654 23445666666666666677754 56899999532 1111 1
Q ss_pred ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHH-HHh----CCcEEE
Q psy8722 82 PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYA-QSV----GAVHFH 156 (223)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~~----~~~~~~ 156 (223)
..+++.+|++++|+|+++..+.....- +..+.. .++|+++|+||+|+.+... .+...+.. ... ..+++.
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 234688999999999999877766543 333322 3689999999999854321 12222222 111 246789
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHH
Q psy8722 157 TSAKMNRGIEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 157 ~Sa~~~~~i~~~~~~i~~~~~~~~~~ 182 (223)
+||++|.|++++++.+.+.+......
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~~~~~ 626 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALESWDQR 626 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhccc
Confidence 99999999999999999988764443
No 193
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.80 E-value=5.2e-19 Score=148.93 Aligned_cols=157 Identities=18% Similarity=0.155 Sum_probs=105.9
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhh--CCCC-----------------------------CCCccccceeEEEEEEEE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVE--DKFN-----------------------------EKHITTLQASFLNKKLNI 59 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 59 (223)
...+.++|+++|+.++|||||+.+|+. +... .+...+.+.+.....+..
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~ 82 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET 82 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence 357789999999999999999999974 2221 111234455554444444
Q ss_pred CCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHH-HHHHHHHHcCCCCeEEEEEeCCCcccccc-
Q psy8722 60 AGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAGNKIDLEKQRT- 137 (223)
Q Consensus 60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~- 137 (223)
..+.+.|||+||++.|.......+..+|++++|+|+++..++..... +...+....+ ..++++++||+|+.+...
T Consensus 83 --~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-~~~iIVviNK~Dl~~~~~~ 159 (426)
T TIGR00483 83 --DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-INQLIVAINKMDSVNYDEE 159 (426)
T ss_pred --CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-CCeEEEEEEChhccCccHH
Confidence 44788999999999886666666789999999999998753311111 1111222222 357999999999854211
Q ss_pred ---CCHHHHHHHHHHhC-----CcEEEecCCCCCCHHHHHH
Q psy8722 138 ---VMQEDAEKYAQSVG-----AVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 138 ---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 170 (223)
...+++.+++...+ ++++++||++|.|+.+.+.
T Consensus 160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 12345566666665 4789999999999987553
No 194
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.80 E-value=6.9e-19 Score=148.16 Aligned_cols=156 Identities=20% Similarity=0.185 Sum_probs=103.7
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCC--C-----------------------------CCCccccceeEEEEEEEE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKF--N-----------------------------EKHITTLQASFLNKKLNI 59 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~ 59 (223)
..++.++|+++|++++|||||+++|+...- . ++..++++.+.....+..
T Consensus 2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~ 81 (425)
T PRK12317 2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET 81 (425)
T ss_pred CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence 357789999999999999999999972211 1 111344555554444444
Q ss_pred CCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCcccccc-
Q psy8722 60 AGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEKQRT- 137 (223)
Q Consensus 60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~- 137 (223)
+ .+.+.+|||||+++|.......+..+|++++|+|+++...+... ..++..+. ..+ ..|+++++||+|+.....
T Consensus 82 ~--~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~~-~~~iivviNK~Dl~~~~~~ 157 (425)
T PRK12317 82 D--KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLAR-TLG-INQLIVAINKMDAVNYDEK 157 (425)
T ss_pred C--CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHH-HcC-CCeEEEEEEccccccccHH
Confidence 4 47889999999988866555567889999999999873122111 12222222 221 246899999999864211
Q ss_pred ---CCHHHHHHHHHHhC-----CcEEEecCCCCCCHHHHHH
Q psy8722 138 ---VMQEDAEKYAQSVG-----AVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 138 ---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 170 (223)
...+++.+++...+ .+++.+||++|.|+.+...
T Consensus 158 ~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 158 RYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 12245556665555 4689999999999987553
No 195
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.80 E-value=5e-18 Score=131.77 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=101.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccc----c---ccccccccCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH----A---LGPIYYRMSN 89 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~---~~~~~~~~~d 89 (223)
+|+++|++|+|||||+++|.+........+..+.+.....+.+++ ..+++||+||..... . ....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999996654333334444444455555666 578899999965332 1 1234678999
Q ss_pred EEEEEEECCCHH-HHHHHHHHHHHH-----------------------------------------HHH-----------
Q psy8722 90 GAVLVYDITDED-SFEKVKNWVKEL-----------------------------------------KKM----------- 116 (223)
Q Consensus 90 ~~i~v~d~~~~~-s~~~~~~~~~~~-----------------------------------------~~~----------- 116 (223)
++++|+|++++. ....+...+..+ ...
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998754 333332222110 000
Q ss_pred -----------cC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 117 -----------LG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 117 -----------~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
.+ ..+|+++|+||+|+.. .++...++.. ..++++||+++.|++++|+.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 00 1368999999999842 3444444443 4689999999999999999988754
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.80 E-value=2.8e-18 Score=152.41 Aligned_cols=155 Identities=21% Similarity=0.236 Sum_probs=107.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc--------ccccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER--------FHALGPI 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~ 83 (223)
....+|+++|.+|+|||||+|+|++... .....++.+.+.......+++ ..+.+|||||.+. +......
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~ 350 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQI 350 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence 4457899999999999999999996543 233446666665555555555 4688999999653 1223344
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCC
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMN 162 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (223)
++..+|++|+|+|+++.-.... ..|...++. .++|+++|+||+|+.... ....++. .++. ..+.+||++|
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g 421 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHG 421 (712)
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCC
Confidence 6789999999999986422111 234444543 468999999999975321 1222222 2333 4678999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRMLE 178 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~~ 178 (223)
.|+.+++++|++.+..
T Consensus 422 ~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 422 RGVGDLLDEALDSLKV 437 (712)
T ss_pred CCchHHHHHHHHhccc
Confidence 9999999999988744
No 197
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.79 E-value=2.6e-18 Score=148.21 Aligned_cols=155 Identities=21% Similarity=0.192 Sum_probs=102.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC----------------CeEEEEEEEeCCCcccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA----------------GKRLNLAIWDTAGQERFHA 79 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~~~ 79 (223)
--|+++|++++|||||+++|.+..+......+++.+.....+..+ .....+.||||||++.|..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 469999999999999999999776654433322222111111110 0011388999999999999
Q ss_pred ccccccccCCEEEEEEECCC---HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC------------CHHH--
Q psy8722 80 LGPIYYRMSNGAVLVYDITD---EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV------------MQED-- 142 (223)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~------------~~~~-- 142 (223)
++..+++.+|++++|+|+++ +.+++.+. .+.. .++|+++++||+|+...+.. ..+.
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 88889999999999999987 45544433 2222 36899999999998532110 0000
Q ss_pred ----------HHHHHH------------Hh--CCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 143 ----------AEKYAQ------------SV--GAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 143 ----------~~~~~~------------~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
..++.. .+ .++++.+||++|+|+++++.+|.....
T Consensus 158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 011111 11 257899999999999999998866543
No 198
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=5.6e-18 Score=122.26 Aligned_cols=158 Identities=21% Similarity=0.229 Sum_probs=120.1
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCC--------CCCCc----cccceeEEEEEEEECCeEEEEEEEeCCCcccc
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKF--------NEKHI----TTLQASFLNKKLNIAGKRLNLAIWDTAGQERF 77 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~--------~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 77 (223)
.......||+|+|+.++||||+++.+..... ...+. .|+..++.... +.+ ...+.+++||||++|
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~--~~~-~~~v~LfgtPGq~RF 81 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIE--LDE-DTGVHLFGTPGQERF 81 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceE--EcC-cceEEEecCCCcHHH
Confidence 3456788999999999999999999986553 11111 12233332222 222 256889999999999
Q ss_pred ccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHh--CCcEE
Q psy8722 78 HALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV--GAVHF 155 (223)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~ 155 (223)
.-+|..+.+++.++|+++|.+.+..+ .....+..+.... .+|++|++||.|+.+.+ +.+.+.++.... ..+.+
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi 156 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVI 156 (187)
T ss_pred HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCCC--CHHHHHHHHHhccCCCcee
Confidence 99999999999999999999999888 5555566555543 28999999999997765 566666666554 78999
Q ss_pred EecCCCCCCHHHHHHHHHHH
Q psy8722 156 HTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 156 ~~Sa~~~~~i~~~~~~i~~~ 175 (223)
+.++.++++..+.++.+...
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999999998887765
No 199
>KOG0076|consensus
Probab=99.79 E-value=4.2e-19 Score=126.42 Aligned_cols=163 Identities=21% Similarity=0.325 Sum_probs=122.4
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhC---CCC----CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVED---KFN----EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPI 83 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 83 (223)
..+..+.|+++|..++|||||+.+.... .+. ..-.+|.|... ..+.+.+ ..+.+||..|++...++|..
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni--g~i~v~~--~~l~fwdlgGQe~lrSlw~~ 88 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI--GTIEVCN--APLSFWDLGGQESLRSLWKK 88 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee--cceeecc--ceeEEEEcCChHHHHHHHHH
Confidence 3466789999999999999999887521 111 12234444444 4444443 57899999999999999999
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHHHHH-HHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHH---Hh---CCcEEE
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWVKEL-KKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ---SV---GAVHFH 156 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~---~~~~~~ 156 (223)
||..+|++|+++|+.+++-|+....-+..+ ......++|+++.+||.|+++.- ...+++..+. .. ..++..
T Consensus 89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~--~~~El~~~~~~~e~~~~rd~~~~p 166 (197)
T KOG0076|consen 89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM--EAAELDGVFGLAELIPRRDNPFQP 166 (197)
T ss_pred HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh--hHHHHHHHhhhhhhcCCccCcccc
Confidence 999999999999999998888877644443 33344689999999999986653 3444444433 22 247889
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 157 TSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 157 ~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
+||.+|+||.+...|+...+.+.
T Consensus 167 vSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 167 VSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred chhhhcccHHHHHHHHHHHHhhc
Confidence 99999999999999999887655
No 200
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.78 E-value=4.3e-18 Score=139.47 Aligned_cols=155 Identities=19% Similarity=0.247 Sum_probs=117.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHh-hCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc--------cc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYV-EDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG--------PI 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~ 83 (223)
...++|+++|.||||||||+|.|. .........+++++++....+.++| +.+.+.||+|........ ..
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 456899999999999999999999 5556678899999999999999999 667788999965433322 33
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCC
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNR 163 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (223)
.+.+||.+++|+|.+.+.+-.... . +. ....+.|+++|.||.|+....... ......+.+++.+|+++++
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~-~---~~-~~~~~~~~i~v~NK~DL~~~~~~~-----~~~~~~~~~~i~iSa~t~~ 362 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLA-L---IE-LLPKKKPIIVVLNKADLVSKIELE-----SEKLANGDAIISISAKTGE 362 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHH-H---HH-hcccCCCEEEEEechhcccccccc-----hhhccCCCceEEEEecCcc
Confidence 568899999999999863222221 1 11 334568999999999996654311 1122234468999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRMLEK 179 (223)
Q Consensus 164 ~i~~~~~~i~~~~~~~ 179 (223)
|++.+.+.|.+.+...
T Consensus 363 Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 363 GLDALREAIKQLFGKG 378 (454)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999988887666
No 201
>KOG0072|consensus
Probab=99.78 E-value=1.2e-19 Score=125.33 Aligned_cols=167 Identities=18% Similarity=0.226 Sum_probs=122.4
Q ss_pred CCCCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q psy8722 6 LDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYY 85 (223)
Q Consensus 6 ~~~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 85 (223)
++....++.+.+|+++|--|+||||++-++...+.. ...|+++..... +..++..+++||..|+-.....|+.||
T Consensus 9 f~~L~g~e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRcYy 83 (182)
T KOG0072|consen 9 FKALQGPEREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRCYY 83 (182)
T ss_pred HHHhcCCccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCccc----cccccccceeeEccCcccccHHHHHHh
Confidence 345566779999999999999999999888754443 335777765433 233568999999999999999999999
Q ss_pred ccCCEEEEEEECCCHHHHHHHHH-HHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHH-----HHHhCCcEEEecC
Q psy8722 86 RMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKY-----AQSVGAVHFHTSA 159 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa 159 (223)
.+.+++|||+|.+|.+....... ++..+....-.+..++|++||.|....- ...++... .+..-+.++++||
T Consensus 84 ~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~--t~~E~~~~L~l~~Lk~r~~~Iv~tSA 161 (182)
T KOG0072|consen 84 ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL--TRSEVLKMLGLQKLKDRIWQIVKTSA 161 (182)
T ss_pred cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh--hHHHHHHHhChHHHhhheeEEEeecc
Confidence 99999999999999876655443 3333433322457889999999975432 12222111 1222256899999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~~ 179 (223)
.+|+|++.+++|+.+.+..+
T Consensus 162 ~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 162 VKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred ccccCCcHHHHHHHHHHhcc
Confidence 99999999999999877643
No 202
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=8.2e-18 Score=137.47 Aligned_cols=171 Identities=18% Similarity=0.227 Sum_probs=122.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh-hCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc----------ccccc-c
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV-EDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE----------RFHAL-G 81 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~-~ 81 (223)
..++|+++|.||+|||||+|+++ .........++++++.....+.++++.+. ++||+|.. .|... .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~--liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYV--LIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEE--EEECCCCCcccccccceEEEeehhh
Confidence 57999999999999999999999 55556777889999998889999897655 55999933 22211 1
Q ss_pred ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHH----HHhC-CcEEE
Q psy8722 82 PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYA----QSVG-AVHFH 156 (223)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~----~~~~-~~~~~ 156 (223)
...+..+|.+++|+|+.++-+-+... ....+. ..+.++++++||+|+.+......++.++-. ...+ ++.+.
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~---~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLR-IAGLIE---EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHH-HHHHHH---HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 33467899999999999976654433 222222 247899999999998654333333332222 2222 47899
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8722 157 TSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASE 190 (223)
Q Consensus 157 ~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~ 190 (223)
+||.++.++.++|+.+.................+
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~ 364 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYECATRRISTSLLNR 364 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHHhccccCHHHHHH
Confidence 9999999999999999887766655544444333
No 203
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.78 E-value=2.2e-18 Score=131.77 Aligned_cols=147 Identities=18% Similarity=0.142 Sum_probs=94.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC-C------------------------------CCccccceeEEEEEEEECCeEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFN-E------------------------------KHITTLQASFLNKKLNIAGKRLN 65 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~-~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (223)
||+++|++|+|||||+++|+...-. . +.....+.+.....+..++ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 6899999999999999999732211 1 0113334444444444444 46
Q ss_pred EEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC----CHH
Q psy8722 66 LAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV----MQE 141 (223)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~ 141 (223)
+.+|||||++.|.......+..+|++|+|+|++++..-.. ......+.. .+ ..++++|+||+|+...... ...
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~-~~-~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSL-LG-IRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHH-cC-CCcEEEEEEchhcccCCHHHHHHHHH
Confidence 7899999998876666667889999999999987532211 121222222 11 2357888999998542211 123
Q ss_pred HHHHHHHHhCC---cEEEecCCCCCCHHHH
Q psy8722 142 DAEKYAQSVGA---VHFHTSAKMNRGIEEM 168 (223)
Q Consensus 142 ~~~~~~~~~~~---~~~~~Sa~~~~~i~~~ 168 (223)
+..+++..+++ +++.+||+++.|+.+.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 44555666664 4899999999999753
No 204
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.78 E-value=2.8e-18 Score=148.59 Aligned_cols=157 Identities=16% Similarity=0.191 Sum_probs=108.4
Q ss_pred EEEEECCCCCcHHHHHHHHhh--CCCCCCC------------ccccceeEEEEEEEECCeEEEEEEEeCCCccccccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE--DKFNEKH------------ITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGP 82 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 82 (223)
||+++|+.++|||||+++|+. +.+.... ....+.++......+......+.+|||||+.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 799999999999999999984 3332211 11123333333333333347888999999999988888
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC-CHHHHHHHHH-------HhCCcE
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV-MQEDAEKYAQ-------SVGAVH 154 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~~ 154 (223)
.++..+|++++|+|+.+. .......|+..+.. .++|+++++||+|+.+.+.. ..+++.+++. ...+++
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence 899999999999999874 23344455555544 36899999999998654321 1233344432 235689
Q ss_pred EEecCCCCC----------CHHHHHHHHHHHHH
Q psy8722 155 FHTSAKMNR----------GIEEMFLELSQRML 177 (223)
Q Consensus 155 ~~~Sa~~~~----------~i~~~~~~i~~~~~ 177 (223)
+.+||++|. |+..+|+.|++.+.
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 999999995 78888888877654
No 205
>PRK10218 GTP-binding protein; Provisional
Probab=99.77 E-value=9.8e-18 Score=145.13 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=110.2
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh--CCCCCCC------------ccccceeEEEEEEEECCeEEEEEEEeCCCcccccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE--DKFNEKH------------ITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA 79 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 79 (223)
+-.||+++|+.++|||||+++|+. +.+.... ..+.+.++......+....+.+.+|||||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 346899999999999999999985 3332221 22345555555555555568899999999999998
Q ss_pred ccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC-CHHHHHHHHHH-------hC
Q psy8722 80 LGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV-MQEDAEKYAQS-------VG 151 (223)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~-------~~ 151 (223)
.+..+++.+|++|+|+|+.+..... ...++..+.. .++|.++++||+|+...+.. ..+++.++... ..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 8899999999999999998753222 2222232222 36899999999998654321 12333333322 34
Q ss_pred CcEEEecCCCCC----------CHHHHHHHHHHHHH
Q psy8722 152 AVHFHTSAKMNR----------GIEEMFLELSQRML 177 (223)
Q Consensus 152 ~~~~~~Sa~~~~----------~i~~~~~~i~~~~~ 177 (223)
++++.+||.+|. ++..+++.|++.+.
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 678999999998 46777766665553
No 206
>KOG0074|consensus
Probab=99.77 E-value=2.9e-18 Score=118.10 Aligned_cols=156 Identities=24% Similarity=0.290 Sum_probs=115.5
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
+.+.+++||+++|-.++|||||+..|.+... ....+|.|+. .+.+...+ .+.+.+||++|+...+..|..||.+.|
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn--~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd 87 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFN--TKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVD 87 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcc--eEEEeecC-cEEEEEEecCCccccchhhhhhhhccc
Confidence 3457899999999999999999999875433 2334555544 45555544 488999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHH-HHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC--------CcEEEecCC
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKE-LKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG--------AVHFHTSAK 160 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~-~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~ 160 (223)
++|||+|.+|..-|+.+..-+.+ +....-..+|++++.||.|+-.+.. . .+.+.+.+ ..+-++|+.
T Consensus 88 ~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~--~---eeia~klnl~~lrdRswhIq~csal 162 (185)
T KOG0074|consen 88 GLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK--V---EEIALKLNLAGLRDRSWHIQECSAL 162 (185)
T ss_pred eEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc--h---HHHHHhcchhhhhhceEEeeeCccc
Confidence 99999999999888887664333 4444445799999999999743322 2 22233322 235679999
Q ss_pred CCCCHHHHHHHHHH
Q psy8722 161 MNRGIEEMFLELSQ 174 (223)
Q Consensus 161 ~~~~i~~~~~~i~~ 174 (223)
+++|+..-.+|+..
T Consensus 163 s~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 163 SLEGSTDGSDWVQS 176 (185)
T ss_pred cccCccCcchhhhc
Confidence 99999888877754
No 207
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.77 E-value=6.2e-18 Score=124.37 Aligned_cols=150 Identities=19% Similarity=0.235 Sum_probs=97.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc----------cccccccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER----------FHALGPIYYR 86 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~ 86 (223)
.|+++|++|+|||||++.+.+........++.+.+.....+..++ .+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996555544455555544444444443 788999999432 2223333333
Q ss_pred ---cCCEEEEEEECCCHH--HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC--CHHHHHHHHH--HhCCcEEEe
Q psy8722 87 ---MSNGAVLVYDITDED--SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV--MQEDAEKYAQ--SVGAVHFHT 157 (223)
Q Consensus 87 ---~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~--~~~~~~~~~ 157 (223)
+++++++++|..+.. ....+..|+... +.|+++++||+|+...... .......... ....+++.+
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 457889999998653 222233343322 4799999999998432211 1122222222 234578999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q psy8722 158 SAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 158 Sa~~~~~i~~~~~~i~~~ 175 (223)
|++++.++.+++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 208
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.76 E-value=2.8e-17 Score=142.32 Aligned_cols=157 Identities=24% Similarity=0.251 Sum_probs=102.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCcc----ccceeEEEEEEEE--CCeE-----E-----EEEEEeCCCccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHIT----TLQASFLNKKLNI--AGKR-----L-----NLAIWDTAGQER 76 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~-----~-----~~~i~D~~G~~~ 76 (223)
.+...|+++|+.++|||||+++|.+......... +.+..+....... .+.. . .+.||||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 3456799999999999999999986554333222 2222222111100 0111 1 268999999999
Q ss_pred cccccccccccCCEEEEEEECCC---HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC----C----------
Q psy8722 77 FHALGPIYYRMSNGAVLVYDITD---EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV----M---------- 139 (223)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~---------- 139 (223)
|..++...+..+|++++|+|+++ +.++..+.. +.. .++|+++++||+|+...+.. .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 98888888899999999999997 555554432 222 36899999999998422110 0
Q ss_pred --HH-------HHHHHHHHh---------------CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 140 --QE-------DAEKYAQSV---------------GAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 140 --~~-------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
.+ +........ .++++.+||.+|.|+++++..+...+
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00 011111211 24689999999999999998876443
No 209
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.76 E-value=4.5e-18 Score=142.14 Aligned_cols=162 Identities=17% Similarity=0.163 Sum_probs=103.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC---CCCccccceeEEEEE------------------EEECC------eEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN---EKHITTLQASFLNKK------------------LNIAG------KRLN 65 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~------------------~~~~~------~~~~ 65 (223)
++.++|+++|+.++|||||+++|...... ++.....+....... ...++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 46899999999999999999999743221 111111111111000 00011 1357
Q ss_pred EEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC--CHHHH
Q psy8722 66 LAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV--MQEDA 143 (223)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~ 143 (223)
+.+||+||+++|...+......+|++++|+|+++..........+..+... + ..|+++++||+|+...... ..+++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-g-i~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-G-IKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-C-CCeEEEEEEccccCCHHHHHHHHHHH
Confidence 889999999998877777778899999999999643111222222233222 1 2478999999998643211 12334
Q ss_pred HHHHHHh---CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 144 EKYAQSV---GAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 144 ~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
.++.... +.+++.+||+++.|+++++++|...+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 4444433 56899999999999999999988654
No 210
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.76 E-value=8.5e-18 Score=137.39 Aligned_cols=151 Identities=18% Similarity=0.165 Sum_probs=110.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccc---------ccccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH---------ALGPIYY 85 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~ 85 (223)
..|+++|.||||||||+|+|++... ..+..++++++.......+.+.. |.++||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 5799999999999999999995554 46778899999888888888855 7777999966322 1224457
Q ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCC
Q psy8722 86 RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRG 164 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 164 (223)
..||++|||+|....-+-.+- .....++. .++|+++|+||+|-. ..++...-...+|+ .++.+||..|.|
T Consensus 82 ~eADvilfvVD~~~Git~~D~-~ia~~Lr~---~~kpviLvvNK~D~~-----~~e~~~~efyslG~g~~~~ISA~Hg~G 152 (444)
T COG1160 82 EEADVILFVVDGREGITPADE-EIAKILRR---SKKPVILVVNKIDNL-----KAEELAYEFYSLGFGEPVPISAEHGRG 152 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHH-HHHHHHHh---cCCCEEEEEEcccCc-----hhhhhHHHHHhcCCCCceEeehhhccC
Confidence 889999999999874433221 11122222 358999999999953 12333333445565 789999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRML 177 (223)
Q Consensus 165 i~~~~~~i~~~~~ 177 (223)
+.++++.++..+.
T Consensus 153 i~dLld~v~~~l~ 165 (444)
T COG1160 153 IGDLLDAVLELLP 165 (444)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999988874
No 211
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.76 E-value=6.5e-18 Score=141.19 Aligned_cols=160 Identities=18% Similarity=0.181 Sum_probs=101.9
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCC---CCCCccccceeEEEEEEEE------------------C--C----eE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKF---NEKHITTLQASFLNKKLNI------------------A--G----KR 63 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~------------------~--~----~~ 63 (223)
..++.++|+++|+.++|||||+.+|.+... ..+.....+.........+ + + ..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 456789999999999999999999964311 1111222222221110000 0 1 12
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHH----HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC-
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDED----SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV- 138 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~- 138 (223)
..+.||||||++.|..........+|++++|+|+.++. +...+. .+... ...|+++++||+|+.+....
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~~~--~i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALDII--GIKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHHHc--CCCcEEEEEEeeccccchhHH
Confidence 57899999999887665555556789999999999642 332222 22221 12468999999998653221
Q ss_pred -CHHHHHHHHHHh---CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 139 -MQEDAEKYAQSV---GAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 139 -~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
..+++..++... +.+++.+||+++.|++++++.|...+
T Consensus 159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 123344444332 46899999999999999999887654
No 212
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.76 E-value=2.3e-17 Score=143.50 Aligned_cols=153 Identities=21% Similarity=0.178 Sum_probs=105.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhh---CCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE---DKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
+-|+++|+.++|||||+++|++ ..+.++...+++.+.....+...+. ..+.+|||||+++|.......+..+|+++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 3589999999999999999985 3344444455555554444433222 34789999999998777777788999999
Q ss_pred EEEECCCH---HHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccccC--CHHHHHHHHHHhC---CcEEEecCCCCC
Q psy8722 93 LVYDITDE---DSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRTV--MQEDAEKYAQSVG---AVHFHTSAKMNR 163 (223)
Q Consensus 93 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~ 163 (223)
+|+|+++. .+.+.+ ..+... ++| ++||+||+|+.+.... ..+++.+++...+ .+++.+||++|.
T Consensus 80 LVVda~eg~~~qT~ehl----~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~ 152 (614)
T PRK10512 80 LVVACDDGVMAQTREHL----AILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGR 152 (614)
T ss_pred EEEECCCCCcHHHHHHH----HHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Confidence 99999873 333332 223222 345 5799999998543221 1234455555444 589999999999
Q ss_pred CHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRM 176 (223)
Q Consensus 164 ~i~~~~~~i~~~~ 176 (223)
|++++++.|.+..
T Consensus 153 gI~~L~~~L~~~~ 165 (614)
T PRK10512 153 GIDALREHLLQLP 165 (614)
T ss_pred CCHHHHHHHHHhh
Confidence 9999998887543
No 213
>KOG1423|consensus
Probab=99.75 E-value=4.5e-18 Score=131.81 Aligned_cols=197 Identities=19% Similarity=0.197 Sum_probs=130.4
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCC-ccccceeEEEEEEEECCeEEEEEEEeCCCccc------cc------
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKH-ITTLQASFLNKKLNIAGKRLNLAIWDTAGQER------FH------ 78 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------~~------ 78 (223)
..+-++|+|||.||+|||||.|.+++.+...-. ...++..-.... +.....++.|+||||.-. +.
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi--~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI--ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE--EecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 367889999999999999999999977665433 222222222222 223336899999999221 11
Q ss_pred cccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc-------------cCCH--HHH
Q psy8722 79 ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR-------------TVMQ--EDA 143 (223)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------------~~~~--~~~ 143 (223)
........+||.+++++|+++....-.- ..+..+.... .+|-+++.||.|....+ .+.. .+.
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 1112345779999999999974322111 1233344332 57999999999963221 1111 111
Q ss_pred -HHHHHH---------hCC----cEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc----cccccceeeec
Q psy8722 144 -EKYAQS---------VGA----VHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRR----GSMRRNVVVVE 205 (223)
Q Consensus 144 -~~~~~~---------~~~----~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 205 (223)
+++... .|. .+|.+||..|+|++++.++|+.++.....+++.+...+.+.+ +.+|++.+...
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd~~ 303 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLDHL 303 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHHHHHHHHhhC
Confidence 111110 011 378899999999999999999999999988888777766666 66899999999
Q ss_pred CCCCCCCC
Q psy8722 206 DEDLPTSS 213 (223)
Q Consensus 206 ~~~~~~~~ 213 (223)
++++||.=
T Consensus 304 pqEVPY~l 311 (379)
T KOG1423|consen 304 PQEVPYNL 311 (379)
T ss_pred ccccCcce
Confidence 99999853
No 214
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.75 E-value=5.5e-17 Score=126.13 Aligned_cols=113 Identities=19% Similarity=0.132 Sum_probs=78.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCC--------CC--------ccccceeEEEEEEEECCeEEEEEEEeCCCccccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNE--------KH--------ITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL 80 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~--------~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 80 (223)
||+++|+.|+|||||+++|+...-.. .. ....+..+......+.....++.+|||||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 68999999999999999997432110 00 011122222222333333478899999999998888
Q ss_pred cccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 81 GPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
+..+++.+|++++|+|..+.... ....|+..+.. .++|+++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence 88899999999999999986433 33444444443 368999999999975
No 215
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.75 E-value=3.8e-17 Score=123.37 Aligned_cols=147 Identities=14% Similarity=0.094 Sum_probs=95.8
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCC----------------CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKF----------------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF 77 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 77 (223)
+.++|+++|+.++|||||+++|+.... ..+.....+.+.. ...+......+.++||||+..+
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~~~~ 78 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTA--HVEYETANRHYAHVDCPGHADY 78 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEee--eeEecCCCeEEEEEECcCHHHH
Confidence 368999999999999999999974310 0111223333332 3333333456778899999888
Q ss_pred ccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccccC---CHHHHHHHHHHhC--
Q psy8722 78 HALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRTV---MQEDAEKYAQSVG-- 151 (223)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 151 (223)
.......+..+|++++|+|+.....-. ....+..+.. .++| +++++||+|+...... ..+++.++....+
T Consensus 79 ~~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~ 154 (195)
T cd01884 79 IKNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFD 154 (195)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccc
Confidence 776777788999999999998743221 2222333333 2566 7789999998432211 1234555555544
Q ss_pred ---CcEEEecCCCCCCHH
Q psy8722 152 ---AVHFHTSAKMNRGIE 166 (223)
Q Consensus 152 ---~~~~~~Sa~~~~~i~ 166 (223)
++++.+||.+|.|+.
T Consensus 155 ~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 155 GDNTPIVRGSALKALEGD 172 (195)
T ss_pred ccCCeEEEeeCccccCCC
Confidence 579999999999864
No 216
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.74 E-value=1.1e-17 Score=128.87 Aligned_cols=146 Identities=17% Similarity=0.156 Sum_probs=92.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC--C-----------------------------CCCccccceeEEEEEEEECCeEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKF--N-----------------------------EKHITTLQASFLNKKLNIAGKRLN 65 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 65 (223)
+|+++|+.++|||||+.+|+.... . .+....++.+.....+..++ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 689999999999999999862111 0 11123334444444455554 67
Q ss_pred EEEEeCCCccccccccccccccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc--cc
Q psy8722 66 LAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDS---F---EKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ--RT 137 (223)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~ 137 (223)
+.+|||||+..+.......+..+|++|+|+|+.+... + ......+..... . ...|+++++||+|+... ..
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-L-GVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH-c-CCCeEEEEEEccccccccccH
Confidence 8899999988776666666788999999999998421 1 111121222222 2 13689999999998632 11
Q ss_pred C----CHHHHHHHHHHhC-----CcEEEecCCCCCCHH
Q psy8722 138 V----MQEDAEKYAQSVG-----AVHFHTSAKMNRGIE 166 (223)
Q Consensus 138 ~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 166 (223)
. ..+++..+....+ .+++.+||++|.|++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1 1123333444443 469999999999987
No 217
>PRK12736 elongation factor Tu; Reviewed
Probab=99.74 E-value=5.4e-17 Score=135.21 Aligned_cols=146 Identities=15% Similarity=0.115 Sum_probs=95.7
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCC----------------CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKF----------------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
..+.++|+++|+.++|||||+++|+.... ..+.....+.+. ....+......+.+|||||++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHH
Confidence 57789999999999999999999974211 111123333333 333343344567899999999
Q ss_pred ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccccCC---HHHHHHHHHHhC
Q psy8722 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRTVM---QEDAEKYAQSVG 151 (223)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~ 151 (223)
+|.......+..+|++++|+|+.+...... ..++..+.. .++| +++++||+|+.+..... .+++.+++...+
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 887666666688999999999987422221 222233332 2577 67889999986332211 234555555555
Q ss_pred -----CcEEEecCCCCC
Q psy8722 152 -----AVHFHTSAKMNR 163 (223)
Q Consensus 152 -----~~~~~~Sa~~~~ 163 (223)
++++.+||.++.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 163 FPGDDIPVIRGSALKAL 179 (394)
T ss_pred CCcCCccEEEeeccccc
Confidence 479999999983
No 218
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.73 E-value=3e-17 Score=115.92 Aligned_cols=135 Identities=24% Similarity=0.261 Sum_probs=95.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc----ccccccccccccCCEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE----RFHALGPIYYRMSNGAV 92 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i 92 (223)
||++||+.|+|||||+++|.+.... +..|....+ .+ .++||||.- .+.........+||.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~~-------~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIEY-------YD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeEe-------cc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 7999999999999999999875542 223322222 12 246999943 22222333446899999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~ 171 (223)
++.|++++.+.-. ..+...+ +.|+|-|+||+|+... ....+.++++.+..|+ ..|++|+.+++|++++.++
T Consensus 69 ll~dat~~~~~~p-----P~fa~~f--~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASMF--NKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCC-----chhhccc--CCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999998653211 1233333 4799999999999732 2256778888888888 5799999999999999987
Q ss_pred HH
Q psy8722 172 LS 173 (223)
Q Consensus 172 i~ 173 (223)
|-
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 219
>KOG1707|consensus
Probab=99.73 E-value=1e-17 Score=139.58 Aligned_cols=171 Identities=18% Similarity=0.322 Sum_probs=127.2
Q ss_pred CCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q psy8722 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87 (223)
Q Consensus 8 ~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (223)
..+...+.+||+++|+.|+||||||-++....+++.-.+-...-..+ ..+....+...+.|++....-......-++.
T Consensus 2 ~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~~~~~l~~Eirk 79 (625)
T KOG1707|consen 2 SDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSDDRLCLRKEIRK 79 (625)
T ss_pred CCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccchhHHHHHHHhh
Confidence 45567789999999999999999999999988876643322211112 3333344567888998655555555667899
Q ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHH-HHHHHHHhC-C-cEEEecCCC
Q psy8722 88 SNGAVLVYDITDEDSFEKVKN-WVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQED-AEKYAQSVG-A-VHFHTSAKM 161 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~ 161 (223)
||++.+||+.+++.+++.+.. |+..+++..+ .++|+|+||||+|.......+.+. ...+...+. + ..++|||++
T Consensus 80 A~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~ 159 (625)
T KOG1707|consen 80 ADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALT 159 (625)
T ss_pred cCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhh
Confidence 999999999999999999875 9999999774 579999999999986655443333 333333332 1 368999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~~ 180 (223)
..++.++|...-.+++...
T Consensus 160 ~~n~~e~fYyaqKaVihPt 178 (625)
T KOG1707|consen 160 LANVSELFYYAQKAVIHPT 178 (625)
T ss_pred hhhhHhhhhhhhheeeccC
Confidence 9999999999888876554
No 220
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.73 E-value=4.1e-17 Score=125.26 Aligned_cols=113 Identities=24% Similarity=0.264 Sum_probs=78.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCC-----------------ccccceeEE--EEEEEE---CCeEEEEEEEeCCCc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKH-----------------ITTLQASFL--NKKLNI---AGKRLNLAIWDTAGQ 74 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~-----------------~~~~~~~~~--~~~~~~---~~~~~~~~i~D~~G~ 74 (223)
+|+++|+.++|||||+++|+........ ....+.++. ...+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999854332210 011112221 112211 355688999999999
Q ss_pred cccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
..+......++..+|++++|+|+.+..+... ..|+..... .++|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9988888888999999999999987655432 334333322 358999999999974
No 221
>COG2262 HflX GTPases [General function prediction only]
Probab=99.73 E-value=1.1e-16 Score=129.17 Aligned_cols=161 Identities=16% Similarity=0.121 Sum_probs=119.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc---------cccccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE---------RFHALGPI 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~ 83 (223)
..-..|.++|.+|+|||||+|+|++.........+.+.+-+.+.+.+.+ ...+.+.||.|-- .|.+..+
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE- 267 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE- 267 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH-
Confidence 4566899999999999999999997777766677777777778887775 2456777999922 1222222
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCC
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNR 163 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (223)
-...+|.++.|+|++++.....+..-...+.......+|+++|.||+|+..... .........-..+.+||+++.
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~ 342 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGE 342 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCc
Confidence 236799999999999998877777777777776556699999999999643322 111122221158999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRMLEKA 180 (223)
Q Consensus 164 ~i~~~~~~i~~~~~~~~ 180 (223)
|++.+++.|.+.+....
T Consensus 343 gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 343 GLDLLRERIIELLSGLR 359 (411)
T ss_pred CHHHHHHHHHHHhhhcc
Confidence 99999999999887554
No 222
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.72 E-value=9.7e-17 Score=133.80 Aligned_cols=148 Identities=13% Similarity=0.090 Sum_probs=97.3
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCC----------------CCCCccccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKF----------------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
.+..+.++|+++|+.++|||||+++|+.... ..+...+.+.+. ..+.++.....+.||||||
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpG 84 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPG 84 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCc
Confidence 4467899999999999999999999973210 111123344443 3334444446788999999
Q ss_pred ccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEE-EEEeCCCccccccCC---HHHHHHHHHH
Q psy8722 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLT-IAGNKIDLEKQRTVM---QEDAEKYAQS 149 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~ 149 (223)
+++|..........+|++++|+|+.+...... .+.+..+.. .++|.+ +++||+|+.+..... .+++.+++..
T Consensus 85 h~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~ 160 (394)
T TIGR00485 85 HADYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred hHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 99887655555678899999999987422221 122222332 256655 689999985432211 2356666666
Q ss_pred hC-----CcEEEecCCCCC
Q psy8722 150 VG-----AVHFHTSAKMNR 163 (223)
Q Consensus 150 ~~-----~~~~~~Sa~~~~ 163 (223)
++ ++++.+|+.++.
T Consensus 161 ~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 161 YDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred cCCCccCccEEECcccccc
Confidence 65 689999999875
No 223
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.72 E-value=3.3e-17 Score=125.80 Aligned_cols=165 Identities=19% Similarity=0.270 Sum_probs=102.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCc-cccceeEEEEEEEECCeEEEEEEEeCCCcccccc-----ccccccccCCE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHI-TTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA-----LGPIYYRMSNG 90 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~ 90 (223)
||+++|++++||||+.+.+..+..+.+.. -..+.+.....+... ..+.+.+||+||+..+.. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999988777554443321 122333333333322 336899999999875543 34667899999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHH--cCCCCeEEEEEeCCCccc--cccCC----HHHHHHHHHHhC---CcEEEecC
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKM--LGNDICLTIAGNKIDLEK--QRTVM----QEDAEKYAQSVG---AVHFHTSA 159 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~--~~~~~----~~~~~~~~~~~~---~~~~~~Sa 159 (223)
+|||+|+...+-.+.+..+...+... ..++..+.++++|+|+.. .+... .+.+.+.+...+ +.++.+|.
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 99999999544444444444433332 346899999999999732 22111 233444445555 67888888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQRMLEKAQEF 183 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~~~~~~ 183 (223)
.+ +.+.++|..+++.+.+.....
T Consensus 160 ~D-~Sly~A~S~Ivq~LiP~~~~l 182 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLIPNLSTL 182 (232)
T ss_dssp TS-THHHHHHHHHHHTTSTTHCCC
T ss_pred cC-cHHHHHHHHHHHHHcccHHHH
Confidence 86 689999999999988765443
No 224
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.71 E-value=4.2e-16 Score=132.98 Aligned_cols=155 Identities=23% Similarity=0.220 Sum_probs=119.2
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL------GPIYY-- 85 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~-- 85 (223)
+..+|+++|+||+|||||+|++++........++.+.+.....+..+++. +.+.|.||-...... ...++
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 34679999999999999999999888888888999999888888888865 667799995433221 12232
Q ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCH
Q psy8722 86 RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (223)
.++|++|-|+|+++-+.--.+ .++. .+-+.|++++.|+.|....+.+ .-+.+++.+.+|+|++.++|++|.|+
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyl--tlQL----lE~g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~ 152 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYL--TLQL----LELGIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGL 152 (653)
T ss_pred CCCCEEEEEcccchHHHHHHH--HHHH----HHcCCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCH
Confidence 467999999999986532221 2222 2237899999999998655443 56678889999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRML 177 (223)
Q Consensus 166 ~~~~~~i~~~~~ 177 (223)
+++...+.+...
T Consensus 153 ~~l~~~i~~~~~ 164 (653)
T COG0370 153 EELKRAIIELAE 164 (653)
T ss_pred HHHHHHHHHhcc
Confidence 999998876443
No 225
>PRK12735 elongation factor Tu; Reviewed
Probab=99.71 E-value=2e-16 Score=131.83 Aligned_cols=150 Identities=13% Similarity=0.073 Sum_probs=96.8
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhCCC----------------CCCCccccceeEEEEEEEECCeEEEEEEEeCC
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKF----------------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (223)
.-+..+.++|+++|+.++|||||+++|+.... ..+...+.+.+. ....++.....+.|+|||
T Consensus 6 ~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~--~~~~~~~~~~~i~~iDtP 83 (396)
T PRK12735 6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINT--SHVEYETANRHYAHVDCP 83 (396)
T ss_pred cCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEE--eeeEEcCCCcEEEEEECC
Confidence 34557889999999999999999999985210 011123333333 233333334567899999
Q ss_pred CccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEE-EEEeCCCccccccC---CHHHHHHHHH
Q psy8722 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLT-IAGNKIDLEKQRTV---MQEDAEKYAQ 148 (223)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~---~~~~~~~~~~ 148 (223)
|++.|.......+..+|++++|+|+.+.... ....++..+.. .++|.+ +++||+|+...... ..+++..++.
T Consensus 84 Gh~~f~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred CHHHHHHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 9988766666667889999999999874322 22233333332 357755 57999998532211 1234555666
Q ss_pred HhC-----CcEEEecCCCCCC
Q psy8722 149 SVG-----AVHFHTSAKMNRG 164 (223)
Q Consensus 149 ~~~-----~~~~~~Sa~~~~~ 164 (223)
.++ ++++.+|+.++.+
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 160 KYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HcCCCcCceeEEecchhcccc
Confidence 554 5789999999854
No 226
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.70 E-value=4e-16 Score=123.27 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=78.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCc---------c-----------ccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHI---------T-----------TLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
-+|+++|++|+|||||+++|+...-..... . ..+..+......+....+.+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999997321110000 0 01222333333444445789999999999
Q ss_pred ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc
Q psy8722 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135 (223)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (223)
+|.......++.+|++|+|+|+.+.... ....++..... .++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCCC
Confidence 8877677788999999999999875322 22233333322 36899999999997554
No 227
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=3.2e-16 Score=122.96 Aligned_cols=160 Identities=19% Similarity=0.241 Sum_probs=116.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc-c-ccccc-------ccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE-R-FHALG-------PIY 84 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~-~~~~~-------~~~ 84 (223)
....|+|.|+||||||||++.++.........|+++..+....+...+ ..++++||||.- + ....+ ...
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 466899999999999999999997777777778887777777777766 567788999921 1 11111 112
Q ss_pred cccCCEEEEEEECCCH--HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCC
Q psy8722 85 YRMSNGAVLVYDITDE--DSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKM 161 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 161 (223)
-+-.++++|+||.+.. .+.+....++..+...+. .|+++|+||.|+.+... .++........+. ....+++..
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~ 320 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEK--LEEIEASVLEEGGEEPLKISATK 320 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhH--HHHHHHHHHhhccccccceeeee
Confidence 2346889999999874 456777778888888774 79999999999865443 3444444444444 478888988
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~ 179 (223)
+.+++..-..+.....+.
T Consensus 321 ~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 321 GCGLDKLREEVRKTALEP 338 (346)
T ss_pred hhhHHHHHHHHHHHhhch
Confidence 999988887777765544
No 228
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.69 E-value=2.5e-16 Score=120.95 Aligned_cols=113 Identities=19% Similarity=0.225 Sum_probs=78.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC--CCC--------------CccccceeEEEEEEEEC--------CeEEEEEEEeCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKF--NEK--------------HITTLQASFLNKKLNIA--------GKRLNLAIWDTA 72 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~--~~~--------------~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~ 72 (223)
+|+++|+.++|||||+.+|+.... ... .....+.......+.+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999984321 110 01111222222222232 346889999999
Q ss_pred CccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
|+..|......+++.+|++++|+|+.+........ .++.....++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~----~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET----VLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH----HHHHHHHcCCCEEEEEECCCcc
Confidence 99999998899999999999999999875544322 2222223468999999999974
No 229
>CHL00071 tufA elongation factor Tu
Probab=99.68 E-value=7.4e-16 Score=129.00 Aligned_cols=148 Identities=14% Similarity=0.074 Sum_probs=97.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCC----------------CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKF----------------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
..+.++|+++|++++|||||+++|+.... ..+...+.+.+..... +......+.+.||||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~--~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVE--YETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEE--EccCCeEEEEEECCChH
Confidence 57789999999999999999999985311 1111233333333333 33333567788999998
Q ss_pred ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccccC---CHHHHHHHHHHhC
Q psy8722 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRTV---MQEDAEKYAQSVG 151 (223)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 151 (223)
.|.......+..+|++++|+|+..... ......+..+.. .++| +++++||+|+.+.... ..+++.++....+
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 877666667788999999999986432 222222333332 2567 7788999998543221 1234555555554
Q ss_pred -----CcEEEecCCCCCCH
Q psy8722 152 -----AVHFHTSAKMNRGI 165 (223)
Q Consensus 152 -----~~~~~~Sa~~~~~i 165 (223)
++++.+|+.+|.++
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 163 FPGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCCcceEEEcchhhcccc
Confidence 57899999998754
No 230
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.68 E-value=1.5e-15 Score=117.09 Aligned_cols=151 Identities=16% Similarity=0.128 Sum_probs=94.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccc-----------------------cceeEEE---------------EEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITT-----------------------LQASFLN---------------KKLN 58 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~-----------------------~~~~~~~---------------~~~~ 58 (223)
||+++|+.++|||||+++|..+.+....... .+.+... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999876554321100 0111000 0111
Q ss_pred ECCeEEEEEEEeCCCcccccccccccc--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc
Q psy8722 59 IAGKRLNLAIWDTAGQERFHALGPIYY--RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136 (223)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (223)
..+ ..+.++||||+++|.......+ ..+|++++|+|+..... .....++..+.. .++|+++++||+|+....
T Consensus 81 ~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KSS--KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eCC--cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHH
Confidence 122 4577889999988865544434 36899999999887543 222233333333 368999999999974332
Q ss_pred cC--CHHHHHHHHHH--------------------------hCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 137 TV--MQEDAEKYAQS--------------------------VGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 137 ~~--~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
.. ..+++.++... ...|++.+|+.+|+|+++++..|.
T Consensus 155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 11 11222222221 123789999999999999987764
No 231
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=9.1e-16 Score=113.22 Aligned_cols=160 Identities=19% Similarity=0.194 Sum_probs=107.7
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG----------QERFHAL 80 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~ 80 (223)
+.+...-|+++|.+|||||||||+|++..--.-...|.|.+.....+.+++. +.++|.|| .+.+..+
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence 3456679999999999999999999986644444556666666666666664 67889999 3344555
Q ss_pred ccccccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC----c
Q psy8722 81 GPIYYRM---SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA----V 153 (223)
Q Consensus 81 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~ 153 (223)
...|+.. -.++++++|+..+-.-.+. +.++.+.. .++|++|++||+|.....+. .......+..++. .
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~-~k~l~~v~~~l~~~~~~~ 171 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSER-NKQLNKVAEELKKPPPDD 171 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHH-HHHHHHHHHHhcCCCCcc
Confidence 5556543 5678889998875433222 22222222 47899999999997554322 2222333333332 2
Q ss_pred --EEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 154 --HFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 154 --~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
++..|+.++.|++++...|.+.+..
T Consensus 172 ~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 172 QWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred ceEEEEecccccCHHHHHHHHHHHhhc
Confidence 6778999999999999999887654
No 232
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.68 E-value=2.3e-15 Score=114.10 Aligned_cols=160 Identities=13% Similarity=0.153 Sum_probs=95.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccce-eEE--EEEEEECCeEEEEEEEeCCCcccccccc-----ccccc
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQA-SFL--NKKLNIAGKRLNLAIWDTAGQERFHALG-----PIYYR 86 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----~~~~~ 86 (223)
++||+++|.+|+|||||+|.|.+.........+.+. ... ...+... ....+.+||+||........ ...+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 479999999999999999999975543322222221 110 1111111 12368899999965332222 22357
Q ss_pred cCCEEEEEEECCCHHHHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCcccccc-----------CCHHHHHHHH----HHh
Q psy8722 87 MSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEKQRT-----------VMQEDAEKYA----QSV 150 (223)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~~~~~~----~~~ 150 (223)
.+|+++++.+. .+... ..|+..+... +.|+++|+||+|+..... ...++..+.+ ...
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 78998888542 22222 3455555554 579999999999832211 0111222222 222
Q ss_pred C---CcEEEecCC--CCCCHHHHHHHHHHHHHHHHHH
Q psy8722 151 G---AVHFHTSAK--MNRGIEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 151 ~---~~~~~~Sa~--~~~~i~~~~~~i~~~~~~~~~~ 182 (223)
+ .++|-+|+. .+.++..+.+.|+..+...+..
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 2 268889998 5789999999999988775443
No 233
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.67 E-value=1.3e-15 Score=120.91 Aligned_cols=142 Identities=12% Similarity=0.157 Sum_probs=92.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCC----------CccccceeEEEEEEEECCeEEEEEEEeCCCcccccc-----
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEK----------HITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA----- 79 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----- 79 (223)
.++|+|+|.+|+|||||+|+|.+..+... ..+|.+.......+..++..+.+.+|||||-.....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 68999999999999999999997666443 234445555555666678778999999999332211
Q ss_pred ---------------------ccccccc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc--
Q psy8722 80 ---------------------LGPIYYR--MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK-- 134 (223)
Q Consensus 80 ---------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-- 134 (223)
.....+. .+|+++|+++.+... ..... +..+..... .+|+++|+||+|+-.
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D--~~~lk~l~~-~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLD--IEFMKRLSK-RVNIIPVIAKADTLTPE 159 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHH--HHHHHHHhc-cCCEEEEEECCCcCCHH
Confidence 1112233 467888888876421 11110 222332222 589999999999843
Q ss_pred cccCCHHHHHHHHHHhCCcEEEecCC
Q psy8722 135 QRTVMQEDAEKYAQSVGAVHFHTSAK 160 (223)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (223)
+.....+.+.+.+..+++++|.....
T Consensus 160 e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 160 ELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred HHHHHHHHHHHHHHHcCCceECCCCC
Confidence 22234566777888889998876653
No 234
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.67 E-value=5.5e-16 Score=130.60 Aligned_cols=150 Identities=15% Similarity=0.152 Sum_probs=101.4
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCC--C-----------------------------CCCccccceeEEEEEEEEC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKF--N-----------------------------EKHITTLQASFLNKKLNIA 60 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~ 60 (223)
..+.++|+++|+.++|||||+.+|+...- . ++....++.+... ..+.
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~--~~~~ 81 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIAL--WKFE 81 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEE--EEec
Confidence 46789999999999999999998863111 0 1112223333333 3334
Q ss_pred CeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHH-------HHHHHHHHHHHHcCCCC-eEEEEEeCCCc
Q psy8722 61 GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFE-------KVKNWVKELKKMLGNDI-CLTIAGNKIDL 132 (223)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl 132 (223)
.....+.++|+||+++|.......+..+|++|+|+|+.+. .|+ ...+.+..+.. .++ ++++++||+|+
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDA 157 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccC
Confidence 4446778889999999998888889999999999999873 232 22222222222 356 47888999997
Q ss_pred ccc-c-----cCCHHHHHHHHHHhC-----CcEEEecCCCCCCHHH
Q psy8722 133 EKQ-R-----TVMQEDAEKYAQSVG-----AVHFHTSAKMNRGIEE 167 (223)
Q Consensus 133 ~~~-~-----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 167 (223)
... . ....+++..++...+ ++|+.+|+.+|+|+.+
T Consensus 158 ~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 158 TTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 521 1 112355667777766 5699999999999864
No 235
>KOG1489|consensus
Probab=99.66 E-value=2.5e-15 Score=117.28 Aligned_cols=155 Identities=21% Similarity=0.235 Sum_probs=110.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc----ccccccc---cccCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF----HALGPIY---YRMSN 89 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~d 89 (223)
.|.+||-||+|||||++++...+......++++..-....+.+++.. .+.+=|+||.-+- ..+-..| +..++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 67899999999999999999655555544554444434444454432 2566699994332 2222333 35689
Q ss_pred EEEEEEECCCH---HHHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCc-EEEecCCCCC
Q psy8722 90 GAVLVYDITDE---DSFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV-HFHTSAKMNR 163 (223)
Q Consensus 90 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 163 (223)
.++||+|++.. ..++.+..+..+++.+.+ ...|.++|+||+|+.+.. ...+.+++..+.-+ ++.+||++++
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~e 353 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSGE 353 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeecccc
Confidence 99999999998 888888887777765533 468999999999985321 22246677777655 8999999999
Q ss_pred CHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQR 175 (223)
Q Consensus 164 ~i~~~~~~i~~~ 175 (223)
++.++++.|.+.
T Consensus 354 gl~~ll~~lr~~ 365 (366)
T KOG1489|consen 354 GLEELLNGLREL 365 (366)
T ss_pred chHHHHHHHhhc
Confidence 999999887653
No 236
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=3.3e-15 Score=124.25 Aligned_cols=159 Identities=18% Similarity=0.186 Sum_probs=120.0
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECC-eEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG-KRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
+..-|+++|+...|||||+..+............++.++.-..+..+. ..-.+.|+|||||+.|..++..-..-+|++|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 445689999999999999999998877777777888888777776642 1235677799999999999988888899999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC---------cEEEecCCCCC
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA---------VHFHTSAKMNR 163 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~Sa~~~~ 163 (223)
+|+++++.--.+.++ .+......++|++|.+||+|..+. .++....-.+++|+ .++.+||++|+
T Consensus 84 LVVa~dDGv~pQTiE----AI~hak~a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 84 LVVAADDGVMPQTIE----AINHAKAAGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEccCCcchhHHH----HHHHHHHCCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 999999953332222 233344458999999999998743 34444444444453 58999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRMLEK 179 (223)
Q Consensus 164 ~i~~~~~~i~~~~~~~ 179 (223)
|+++++..+.-.....
T Consensus 157 Gi~eLL~~ill~aev~ 172 (509)
T COG0532 157 GIDELLELILLLAEVL 172 (509)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999998877654443
No 237
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.65 E-value=4.6e-15 Score=127.13 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=79.4
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh--CCCCCC-----------C-------ccccceeEEEEEEEECCeEEEEEEEeC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE--DKFNEK-----------H-------ITTLQASFLNKKLNIAGKRLNLAIWDT 71 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~--~~~~~~-----------~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~ 71 (223)
..+..+|+++|+.++|||||+++|+. +..... . ....+..+......+....+.+.+|||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 35677999999999999999999973 111000 0 001122232333333334477899999
Q ss_pred CCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
||+.+|......+++.+|++|+|+|+.+.... ....++.... ..++|+++++||+|+.
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~---~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR---LRDTPIFTFINKLDRD 144 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH---hcCCCEEEEEECCccc
Confidence 99999888777788999999999999875321 2233333332 2478999999999974
No 238
>PLN03126 Elongation factor Tu; Provisional
Probab=99.64 E-value=2.4e-15 Score=127.40 Aligned_cols=149 Identities=14% Similarity=0.068 Sum_probs=98.2
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCC----------------CCCCccccceeEEEEEEEECCeEEEEEEEeCCCc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKF----------------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (223)
...+.++|+++|+.++|||||+++|+.... ..+.....+.+.....+..++ ..+.++|+||+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh 154 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGH 154 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCH
Confidence 357789999999999999999999984211 112223333333333333344 56788899999
Q ss_pred cccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccccC---CHHHHHHHHHHh
Q psy8722 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRTV---MQEDAEKYAQSV 150 (223)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~ 150 (223)
++|.......+..+|++++|+|+.+..... ..+++..+.. .++| +++++||+|+.+.... ..+++.++....
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~ 230 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSY 230 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhc
Confidence 998777766778899999999998753222 2333333333 2577 7788999998542211 123455555554
Q ss_pred -----CCcEEEecCCCCCCH
Q psy8722 151 -----GAVHFHTSAKMNRGI 165 (223)
Q Consensus 151 -----~~~~~~~Sa~~~~~i 165 (223)
+++++.+|+.++.++
T Consensus 231 g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 231 EFPGDDIPIISGSALLALEA 250 (478)
T ss_pred CCCcCcceEEEEEccccccc
Confidence 357899999887543
No 239
>PRK00049 elongation factor Tu; Reviewed
Probab=99.64 E-value=6.2e-15 Score=122.89 Aligned_cols=150 Identities=13% Similarity=0.087 Sum_probs=96.7
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhCCC----------------CCCCccccceeEEEEEEEECCeEEEEEEEeCC
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKF----------------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (223)
..+..+.++|+++|+.++|||||+++|+.... ..+...+.+.+.. ...+......+.++|||
T Consensus 6 ~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtP 83 (396)
T PRK00049 6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTA--HVEYETEKRHYAHVDCP 83 (396)
T ss_pred ccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeee--EEEEcCCCeEEEEEECC
Confidence 44567899999999999999999999985211 1111233333333 33343333567788999
Q ss_pred CccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEE-EEEeCCCccccccC---CHHHHHHHHH
Q psy8722 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLT-IAGNKIDLEKQRTV---MQEDAEKYAQ 148 (223)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~---~~~~~~~~~~ 148 (223)
|+.+|.......+..+|++++|+|+.+... .....++..+.. .++|.+ +++||+|+...... ...++.++..
T Consensus 84 G~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~ 159 (396)
T PRK00049 84 GHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred CHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence 998877666667789999999999987532 222233333333 257875 58999998532211 1223444444
Q ss_pred HhC-----CcEEEecCCCCCC
Q psy8722 149 SVG-----AVHFHTSAKMNRG 164 (223)
Q Consensus 149 ~~~-----~~~~~~Sa~~~~~ 164 (223)
..+ ++++.+||.++.+
T Consensus 160 ~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 160 KYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred hcCCCccCCcEEEeecccccC
Confidence 433 5789999998753
No 240
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.64 E-value=1.5e-15 Score=128.93 Aligned_cols=153 Identities=18% Similarity=0.136 Sum_probs=95.7
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCC--CCC-------------------------------CCccccceeEEEEEEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDK--FNE-------------------------------KHITTLQASFLNKKLN 58 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~-------------------------------~~~~~~~~~~~~~~~~ 58 (223)
....+||+++|+.++|||||+.+|+... ... +...+++.+.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 4667999999999999999999997322 111 0011223333333333
Q ss_pred ECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC
Q psy8722 59 IAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV 138 (223)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (223)
.+ ...+.||||||++.|.......+..+|++++|+|+.+...-.....| ..+.. .+ ..++++++||+|+.+....
T Consensus 104 ~~--~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~-lg-~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 104 TE--KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATL-LG-IKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred cC--CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHH-hC-CCceEEEEEeeccccchhH
Confidence 33 35788999999988866555557999999999999865321111111 11222 21 2478899999998643221
Q ss_pred CHH----HHHHHHHHhC----CcEEEecCCCCCCHHHHH
Q psy8722 139 MQE----DAEKYAQSVG----AVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 139 ~~~----~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~ 169 (223)
..+ +...+....+ .+++.+||++|.|+.+.-
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 122 2223333333 578999999999998653
No 241
>PLN03127 Elongation factor Tu; Provisional
Probab=99.64 E-value=5e-15 Score=124.75 Aligned_cols=150 Identities=13% Similarity=0.088 Sum_probs=92.9
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhC------C----------CCCCCccccceeEEEEEEEECCeEEEEEEEeCC
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVED------K----------FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (223)
.....+.++|+++|+.++|||||+++|.+. . ..++...+++.+..... ++....++.++|||
T Consensus 55 ~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~--~~~~~~~i~~iDtP 132 (447)
T PLN03127 55 FTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVE--YETAKRHYAHVDCP 132 (447)
T ss_pred hhcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEE--EcCCCeEEEEEECC
Confidence 444678999999999999999999999621 1 11222344455543333 43334567888999
Q ss_pred CccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccccCC---HHHHHHHHH
Q psy8722 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRTVM---QEDAEKYAQ 148 (223)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~ 148 (223)
|+.+|..........+|++++|+|+.+...-+ ..+.+..+.. .++| +++++||+|+....... .+++.++..
T Consensus 133 Gh~~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~ 208 (447)
T PLN03127 133 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLS 208 (447)
T ss_pred CccchHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 99887665555567799999999998653221 2222223332 3578 57889999985422211 112333433
Q ss_pred Hh-----CCcEEEecCC---CCCC
Q psy8722 149 SV-----GAVHFHTSAK---MNRG 164 (223)
Q Consensus 149 ~~-----~~~~~~~Sa~---~~~~ 164 (223)
.. .++++.+|+. ++.|
T Consensus 209 ~~~~~~~~vpiip~Sa~sa~~g~n 232 (447)
T PLN03127 209 FYKFPGDEIPIIRGSALSALQGTN 232 (447)
T ss_pred HhCCCCCcceEEEeccceeecCCC
Confidence 32 2567888765 4554
No 242
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.64 E-value=6.1e-15 Score=116.67 Aligned_cols=112 Identities=16% Similarity=0.116 Sum_probs=78.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC------------------CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKF------------------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH 78 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (223)
||+++|++++|||||+++|+.... +.+....++.+.....+.+++ ..+.+|||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 689999999999999999973211 111223334444444455555 678889999998888
Q ss_pred cccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 79 ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
..+...++.+|++|+|+|+.+...-.. ...+..+.. .++|+++++||+|+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 888888999999999999987532221 222233332 3689999999999864
No 243
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.63 E-value=2.2e-15 Score=125.99 Aligned_cols=148 Identities=17% Similarity=0.171 Sum_probs=93.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCC--CCC-------------------------------CCccccceeEEEEEEEECCe
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDK--FNE-------------------------------KHITTLQASFLNKKLNIAGK 62 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~--~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 62 (223)
+||+++|+.++|||||+.+|+... ... +.....+.+.....+..++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~- 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK- 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence 589999999999999999996221 111 1112223343333333444
Q ss_pred EEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC---
Q psy8722 63 RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM--- 139 (223)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--- 139 (223)
..+.||||||+++|.......+..+|++++|+|+...........| ..+... + ..++++++||+|+.......
T Consensus 80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~-~-~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLL-G-IRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHc-C-CCcEEEEEEecccccchHHHHHH
Confidence 5788999999998876666677899999999999875322211111 122221 1 23688999999985432211
Q ss_pred -HHHHHHHHHHhC---CcEEEecCCCCCCHHHH
Q psy8722 140 -QEDAEKYAQSVG---AVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 140 -~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~ 168 (223)
.++...+....+ ++++.+||.+|.|+.+.
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 122333344444 36999999999999863
No 244
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.63 E-value=3.5e-15 Score=118.44 Aligned_cols=140 Identities=17% Similarity=0.177 Sum_probs=88.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCc------------------cccceeEEEEEEEECCeEEEEEEEeCCCccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHI------------------TTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH 78 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (223)
+|+++|++|+|||||+++++......... ...+.......+.+++ ..+.+|||||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 68999999999999999997432111000 1111222223333444 678899999998877
Q ss_pred cccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEE--E
Q psy8722 79 ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHF--H 156 (223)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~ 156 (223)
..+..++..+|++++|+|+++........-|. .+. ..++|.++++||+|..... ..+...++...++.+++ .
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~---~~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLWE-FAD---EAGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHH---HcCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEE
Confidence 77788889999999999999865443333332 222 2368999999999986542 23334445455555433 3
Q ss_pred ecCCCCCC
Q psy8722 157 TSAKMNRG 164 (223)
Q Consensus 157 ~Sa~~~~~ 164 (223)
+...++.+
T Consensus 153 ip~~~~~~ 160 (268)
T cd04170 153 LPIGEGDD 160 (268)
T ss_pred ecccCCCc
Confidence 33444443
No 245
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.63 E-value=4.5e-15 Score=125.16 Aligned_cols=152 Identities=14% Similarity=0.140 Sum_probs=98.3
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhC--CCC-----------------------------CCCccccceeEEEEEEEE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVED--KFN-----------------------------EKHITTLQASFLNKKLNI 59 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~ 59 (223)
...+.++|+++|+.++|||||+.+|+.. ... ++.....+.+..... +
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~--~ 80 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWK--F 80 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEE--E
Confidence 3578899999999999999999998741 111 111223333333333 3
Q ss_pred CCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHcCCCCe-EEEEEeCCCc
Q psy8722 60 AGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDS---F---EKVKNWVKELKKMLGNDIC-LTIAGNKIDL 132 (223)
Q Consensus 60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl 132 (223)
......+.|+|+||+.+|.......+..+|++++|+|+.+... + ....+.+..+.. .++| +++++||+|.
T Consensus 81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDD 157 (446)
T ss_pred ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEcccc
Confidence 3444677888999999998877777899999999999987421 1 122222222222 2555 6789999995
Q ss_pred cc--cc----cCCHHHHHHHHHHhC-----CcEEEecCCCCCCHHH
Q psy8722 133 EK--QR----TVMQEDAEKYAQSVG-----AVHFHTSAKMNRGIEE 167 (223)
Q Consensus 133 ~~--~~----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 167 (223)
.. .. ....+++.+++...+ ++++.+|+.+|+|+.+
T Consensus 158 ~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 158 KTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 32 11 111234444444443 5689999999999864
No 246
>KOG0462|consensus
Probab=99.63 E-value=5.3e-15 Score=122.74 Aligned_cols=164 Identities=18% Similarity=0.160 Sum_probs=117.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC--CC-------------CCccccceeEEEEEEE-ECCeEEEEEEEeCCCccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF--NE-------------KHITTLQASFLNKKLN-IAGKRLNLAIWDTAGQER 76 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~--~~-------------~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~G~~~ 76 (223)
++--|+.+|-+-.-|||||..+|+.... .. +...+++..-....+. .++..+.+.++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 5566899999999999999999973222 11 1123333333333332 246668999999999999
Q ss_pred cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC-HHHHHHHHHHhCCcEE
Q psy8722 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM-QEDAEKYAQSVGAVHF 155 (223)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~ 155 (223)
|.......+..++++|+|+|++..-.-+.+-.++..+. .+..+|.|+||+|+...+... ..++.+++.....+.+
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i 213 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI 213 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence 99999999999999999999998655444444444444 468899999999997765321 1223333344445789
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 156 HTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 156 ~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
.+||++|.|+.++++.|++.+....
T Consensus 214 ~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 214 YVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred EEEeccCccHHHHHHHHHhhCCCCC
Confidence 9999999999999999998875543
No 247
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.62 E-value=2.4e-14 Score=112.20 Aligned_cols=155 Identities=17% Similarity=0.132 Sum_probs=110.8
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc----c---cccccccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF----H---ALGPIYYR 86 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~---~~~~~~~~ 86 (223)
-..+++++|.|++|||||++.|++........++++.+..+..+.+++ ..+++.|+||.-.- . ...-...+
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 356899999999999999999998777766667777777788888888 67888899983221 1 22345679
Q ss_pred cCCEEEEEEECCCHHH-HHHHHHHHHHHHHHcC---C-------------------------------------------
Q psy8722 87 MSNGAVLVYDITDEDS-FEKVKNWVKELKKMLG---N------------------------------------------- 119 (223)
Q Consensus 87 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~---~------------------------------------------- 119 (223)
+||++++|+|+....+ .+.+.+.+...--..+ +
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999987554 3333332111110000 0
Q ss_pred -------------------CCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 120 -------------------DICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 120 -------------------~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
-+|.++|.||.|+.. .++...+.... .++.+||..+.|++++.+.|.+.+-
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 478899999999754 34444444444 7899999999999999998888763
No 248
>PRK13351 elongation factor G; Reviewed
Probab=99.62 E-value=7e-15 Score=130.70 Aligned_cols=116 Identities=18% Similarity=0.135 Sum_probs=81.9
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCC--------CCC----------ccccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFN--------EKH----------ITTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
.++..||+++|+.++|||||+++|+..... ... ....+.......+.++ ...+.+|||||
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG 82 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--NHRINLIDTPG 82 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--CEEEEEEECCC
Confidence 356789999999999999999999842210 000 0111222222233344 47889999999
Q ss_pred ccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
+.++...+..+++.+|++++|+|+.+.........|.. +.. .++|+++++||+|+.
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~-~~~---~~~p~iiviNK~D~~ 138 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQ-ADR---YGIPRLIFINKMDRV 138 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHh---cCCCEEEEEECCCCC
Confidence 99888888889999999999999998766554444432 222 368999999999974
No 249
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.62 E-value=1.3e-14 Score=100.74 Aligned_cols=106 Identities=22% Similarity=0.230 Sum_probs=70.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc---------ccccccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF---------HALGPIYYR 86 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~ 86 (223)
+|+|+|.+|+|||||+|+|++... .....+..+.......+.+++.. +.++||||.... .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 699999999999999999996432 33334445555444555667754 468899994321 111222347
Q ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeC
Q psy8722 87 MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNK 129 (223)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 129 (223)
.+|++++|+|.+++.. +....++..++ .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 8999999999887422 22333333342 46899999998
No 250
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.61 E-value=5.2e-15 Score=130.27 Aligned_cols=154 Identities=15% Similarity=0.129 Sum_probs=96.7
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhCCC--CCC-------------------------------CccccceeEEEE
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKF--NEK-------------------------------HITTLQASFLNK 55 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~--~~~-------------------------------~~~~~~~~~~~~ 55 (223)
..+....++|+++|++++|||||+++|+...- ... ...+.+.+....
T Consensus 18 ~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~ 97 (632)
T PRK05506 18 QHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYR 97 (632)
T ss_pred hccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeee
Confidence 34556789999999999999999999983221 100 011222233333
Q ss_pred EEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc
Q psy8722 56 KLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135 (223)
Q Consensus 56 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (223)
.+..++ ..+.|+||||++.|.......+..+|++++|+|+.+...-.. ......+... + ..+++|++||+|+...
T Consensus 98 ~~~~~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~-~-~~~iivvvNK~D~~~~ 172 (632)
T PRK05506 98 YFATPK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLL-G-IRHVVLAVNKMDLVDY 172 (632)
T ss_pred EEccCC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHh-C-CCeEEEEEEecccccc
Confidence 333334 467789999998876555556789999999999976532211 1112222222 1 2578899999998542
Q ss_pred ccCCH----HHHHHHHHHhCC---cEEEecCCCCCCHHH
Q psy8722 136 RTVMQ----EDAEKYAQSVGA---VHFHTSAKMNRGIEE 167 (223)
Q Consensus 136 ~~~~~----~~~~~~~~~~~~---~~~~~Sa~~~~~i~~ 167 (223)
..... .++.++....++ +++.+||++|.|+.+
T Consensus 173 ~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 173 DQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 11111 223344455554 589999999999985
No 251
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.60 E-value=1.8e-14 Score=116.15 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=54.7
Q ss_pred EEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEE---------------------ECC-eEEEEEEEeCCCc-
Q psy8722 18 VVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLN---------------------IAG-KRLNLAIWDTAGQ- 74 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~G~- 74 (223)
|+++|.+++|||||+|+|++........+..+.+....... .++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999997665433333333222211111 122 3367999999996
Q ss_pred ---cccccccccc---cccCCEEEEEEECC
Q psy8722 75 ---ERFHALGPIY---YRMSNGAVLVYDIT 98 (223)
Q Consensus 75 ---~~~~~~~~~~---~~~~d~~i~v~d~~ 98 (223)
+.+..+...+ ++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3444444443 79999999999997
No 252
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.60 E-value=8e-15 Score=123.44 Aligned_cols=163 Identities=14% Similarity=0.170 Sum_probs=102.9
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCC---CCCCccccceeEEEEEE---------------EECCe-----------
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKF---NEKHITTLQASFLNKKL---------------NIAGK----------- 62 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~~----------- 62 (223)
....++|.++|+...|||||+.+|++... .++.....+.+...... ..+..
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 36789999999999999999999984322 22322222222111100 01000
Q ss_pred -----EEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 63 -----RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 63 -----~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
...+.|+|+||++.|..........+|++++|+|+.+........+.+..+.. .+ -.++++++||+|+.+...
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~-lg-i~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEI-MK-LKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHH-cC-CCcEEEEEecccccCHHH
Confidence 13578889999998877766677899999999999974211112222222222 21 246889999999854221
Q ss_pred C--CHHHHHHHHHH---hCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 138 V--MQEDAEKYAQS---VGAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 138 ~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
. ..+++.++... .+.+++.+||.+|.|++.+++.|.+.+
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 1 12333333332 356899999999999999988887644
No 253
>KOG1191|consensus
Probab=99.58 E-value=6.4e-15 Score=120.99 Aligned_cols=167 Identities=17% Similarity=0.184 Sum_probs=111.5
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHh-hCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc-cccc--------c
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYV-EDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER-FHAL--------G 81 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~--------~ 81 (223)
.+..++|+++|+||+|||||+|.|. .........++++++.....+.++| +.+.+.||+|-.+ -... .
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA 342 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERA 342 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHH
Confidence 3556999999999999999999999 4455577789999998888888888 5677779999543 1111 1
Q ss_pred ccccccCCEEEEEEECCCH--HHHHHHHHHHHHHHHHcC------CCCeEEEEEeCCCcccc-ccCCHHHHHHHHHHhC-
Q psy8722 82 PIYYRMSNGAVLVYDITDE--DSFEKVKNWVKELKKMLG------NDICLTIAGNKIDLEKQ-RTVMQEDAEKYAQSVG- 151 (223)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~------~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~- 151 (223)
...+..+|++++|+|+... ++-..+.+.+........ ...+++++.||+|+... .+..... ..+....+
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~ 421 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGR 421 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccC
Confidence 2345789999999999442 222222333333322111 24688999999998554 1111111 11112122
Q ss_pred --C-cEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy8722 152 --A-VHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 152 --~-~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 181 (223)
+ ...++|+++++|+..+.+.+.+.+.....
T Consensus 422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 422 SVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred cccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 2 34569999999999999888887765544
No 254
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.57 E-value=1.2e-13 Score=113.13 Aligned_cols=161 Identities=20% Similarity=0.208 Sum_probs=119.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC--CC-------------CCccccceeEEEEEEEE---CCeEEEEEEEeCCCc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF--NE-------------KHITTLQASFLNKKLNI---AGKRLNLAIWDTAGQ 74 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~--~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~ 74 (223)
++--|..++-+-.-|||||..+++.... .. +...+++.......+.+ +|.++.++++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 3445778899999999999999873222 11 22334444444444443 457899999999999
Q ss_pred cccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC--
Q psy8722 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-- 152 (223)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 152 (223)
-+|.-.....+..|.++++|+|++..---+.+.+.+..+.. +.-++-|+||+||+.... ..-..++..-.|+
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adp--ervk~eIe~~iGid~ 160 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADP--ERVKQEIEDIIGIDA 160 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCH--HHHHHHHHHHhCCCc
Confidence 99988888888999999999999987655566655555544 678899999999976642 3344455566776
Q ss_pred -cEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 153 -VHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 153 -~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
..+.+||++|.|+.++++.|++++...
T Consensus 161 ~dav~~SAKtG~gI~~iLe~Iv~~iP~P 188 (603)
T COG0481 161 SDAVLVSAKTGIGIEDVLEAIVEKIPPP 188 (603)
T ss_pred chheeEecccCCCHHHHHHHHHhhCCCC
Confidence 468899999999999999998877543
No 255
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.56 E-value=1.5e-13 Score=104.14 Aligned_cols=159 Identities=13% Similarity=0.137 Sum_probs=95.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCC--ccccceeEEEEEEEECCeEEEEEEEeCCCcccccc-------c----cc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKH--ITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA-------L----GP 82 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~----~~ 82 (223)
++|+++|.+|+|||||+|.+++....... .+..+.........+++. .+.++||||-..... . ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~--~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGR--RVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCe--EEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 48999999999999999999965443222 223333333444445564 577889999543211 0 11
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCC--CCeEEEEEeCCCccccccC------CHHHHHHHHHHhCCcE
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN--DICLTIAGNKIDLEKQRTV------MQEDAEKYAQSVGAVH 154 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~ 154 (223)
....++|++++|+++.+ .+- .....+..+...+++ -.+++++.|+.|.-....+ .....+.+.+..+..+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 22467899999999887 221 122334444444432 2478888999885322110 1244556666666665
Q ss_pred EEec-----CCCCCCHHHHHHHHHHHHHH
Q psy8722 155 FHTS-----AKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 155 ~~~S-----a~~~~~i~~~~~~i~~~~~~ 178 (223)
+..+ +..+.++.++++.|.+.+.+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 4444 34567777777777766655
No 256
>PRK12739 elongation factor G; Reviewed
Probab=99.56 E-value=1.2e-13 Score=122.75 Aligned_cols=117 Identities=16% Similarity=0.102 Sum_probs=82.8
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCC------------------CCCccccceeEEEEEEEECCeEEEEEEEeCC
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFN------------------EKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (223)
+.++-.||+++|+.++|||||+++|+...-. .+....++.+.....+.+++ ..+.++|||
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTP 81 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTP 81 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCC
Confidence 3456779999999999999999999732110 01133445555555566665 567888999
Q ss_pred CccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
|+..+...+...+..+|++|+|+|+.+....... ..+..+. ..++|.++++||+|+.
T Consensus 82 G~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~---~~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 82 GHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQAD---KYGVPRIVFVNKMDRI 138 (691)
T ss_pred CHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECCCCC
Confidence 9988877778888999999999999876432222 2222222 2368999999999975
No 257
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.56 E-value=1e-13 Score=123.21 Aligned_cols=134 Identities=16% Similarity=0.088 Sum_probs=89.5
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCC------------------CCccccceeEEEEEEEECCeEEEEEEEeC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNE------------------KHITTLQASFLNKKLNIAGKRLNLAIWDT 71 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 71 (223)
.+.++-.||+++|+.++|||||+++|+...-.. +....++.+.....+.+++ ..+.+|||
T Consensus 5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDT 82 (689)
T TIGR00484 5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDT 82 (689)
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEEC
Confidence 345566799999999999999999997321110 0112334444444555555 67889999
Q ss_pred CCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC
Q psy8722 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG 151 (223)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 151 (223)
||+.++.......++.+|++++|+|+.+........ ++..+.. .++|+++++||+|+.... ......++...++
T Consensus 83 PG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~ivviNK~D~~~~~--~~~~~~~i~~~l~ 156 (689)
T TIGR00484 83 PGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR---YEVPRIAFVNKMDKTGAN--FLRVVNQIKQRLG 156 (689)
T ss_pred CCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhC
Confidence 999988777788899999999999998864443322 2222322 368999999999986533 1233344444444
No 258
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.56 E-value=1.5e-14 Score=106.68 Aligned_cols=118 Identities=23% Similarity=0.263 Sum_probs=69.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEE-CCeEEEEEEEeCCCcccccccccc---ccccCCE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNI-AGKRLNLAIWDTAGQERFHALGPI---YYRMSNG 90 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~d~ 90 (223)
.-.|+++|+.|+|||+|+.+|..+...+...+. ... ....+ ......+.++|+|||.+.+..... +..++.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n---~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENN---IAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEE---EECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCC---ceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 457899999999999999999977554332222 111 12222 112235678899999987764433 4788999
Q ss_pred EEEEEECCC-HHHHHHHHH-HHHHHHHHc--CCCCeEEEEEeCCCccccc
Q psy8722 91 AVLVYDITD-EDSFEKVKN-WVKELKKML--GNDICLTIAGNKIDLEKQR 136 (223)
Q Consensus 91 ~i~v~d~~~-~~s~~~~~~-~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~ 136 (223)
+|||+|.+. ......+.+ ++..+.... ...+|++|+.||.|+...+
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 999999975 334444433 444444332 4678999999999985543
No 259
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.56 E-value=4.6e-14 Score=121.06 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=81.1
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh--CCCCCC------------------CccccceeEEEEEEEECCeEEEEEEEeC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE--DKFNEK------------------HITTLQASFLNKKLNIAGKRLNLAIWDT 71 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~--~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 71 (223)
..+..+|+++|++++|||||+++|+. +..... .....+..+......++...+.+.+|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 45678999999999999999999862 211100 0011123333333444445578899999
Q ss_pred CCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
||+..|.......+..+|++|+|+|+.+... .....++..... .++|+++++||+|+..
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 9998887777778899999999999987421 222334333332 4689999999999854
No 260
>KOG1145|consensus
Probab=99.56 E-value=1.1e-13 Score=114.96 Aligned_cols=155 Identities=16% Similarity=0.137 Sum_probs=115.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
++..-|-++|+..-|||||+..|...........+++.++.-..+..... -.+.|.|||||..|..++..-..-+|+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 34557889999999999999999877776665666666665555555422 45667799999999999988888899999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC---------cEEEecCCCCC
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA---------VHFHTSAKMNR 163 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~Sa~~~~ 163 (223)
+|+.++|.-..+.+ +.+......++|+++.+||+|.++. ..+.+.+-...+|+ ..+.+||++|+
T Consensus 230 LVVAadDGVmpQT~----EaIkhAk~A~VpiVvAinKiDkp~a---~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 230 LVVAADDGVMPQTL----EAIKHAKSANVPIVVAINKIDKPGA---NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred EEEEccCCccHhHH----HHHHHHHhcCCCEEEEEeccCCCCC---CHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 99999985433332 2344444458999999999997654 35555555554543 57999999999
Q ss_pred CHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQR 175 (223)
Q Consensus 164 ~i~~~~~~i~~~ 175 (223)
|++.+-+.+...
T Consensus 303 nl~~L~eaill~ 314 (683)
T KOG1145|consen 303 NLDLLEEAILLL 314 (683)
T ss_pred ChHHHHHHHHHH
Confidence 999887666543
No 261
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.55 E-value=1e-13 Score=109.58 Aligned_cols=163 Identities=20% Similarity=0.201 Sum_probs=104.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEE-CCeEEEEEEEeCCCcccc----ccccccc---cccC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNI-AGKRLNLAIWDTAGQERF----HALGPIY---YRMS 88 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~ 88 (223)
-|.+||-|++||||||+.+...+..-...+.++..-.--.+.+ .+. .|.+=|+||.-.- ..+-..| +..+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~--sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGE--SFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCC--cEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 4678999999999999999955554443444433322223333 333 3555599993321 2222333 3557
Q ss_pred CEEEEEEECCCHH---HHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCc-EEEecCCCC
Q psy8722 89 NGAVLVYDITDED---SFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV-HFHTSAKMN 162 (223)
Q Consensus 89 d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~ 162 (223)
.++++|+|++..+ ..++......++..+.. .+.|.+||+||+|+....+......+.+....+.. ++.+|+.++
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 8999999998654 35555555566655432 46899999999997554433333344444444443 222999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~~~~~ 181 (223)
+|++++...+.+.+.....
T Consensus 319 ~g~~~L~~~~~~~l~~~~~ 337 (369)
T COG0536 319 EGLDELLRALAELLEETKA 337 (369)
T ss_pred cCHHHHHHHHHHHHHHhhh
Confidence 9999999888888777653
No 262
>KOG0077|consensus
Probab=99.55 E-value=1.4e-14 Score=102.74 Aligned_cols=155 Identities=24% Similarity=0.303 Sum_probs=111.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.=|++++|-.|+|||||++.|.++.... +.||.- -+...+.+.+ +++.-+|.+|+......+..|+..+|+++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccc-cCCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 456699999999999999999998766643 233322 2233455666 67888899999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHH---HHh---C-----------CcE
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYA---QSV---G-----------AVH 154 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---~~~---~-----------~~~ 154 (223)
+.+|+.+.+.|...+.-++.+-... -...|+++.+||+|....- +.++..... +.. + +..
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev 170 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV 170 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence 9999999998888776554443321 2468999999999986543 333322221 111 1 135
Q ss_pred EEecCCCCCCHHHHHHHHHH
Q psy8722 155 FHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~i~~ 174 (223)
+.||...+.+.-+.|.|+..
T Consensus 171 fmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 171 FMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred EEEEEEccCccceeeeehhh
Confidence 77888888888888877654
No 263
>KOG1490|consensus
Probab=99.55 E-value=2.2e-14 Score=117.95 Aligned_cols=173 Identities=14% Similarity=0.138 Sum_probs=124.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc----cccc-----cc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF----HALG-----PI 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~-----~~ 83 (223)
.+.-.++|+|.+++|||||+|.++......+..++++..+....+.+.. ...+++||||.-+. .... ..
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 4566899999999999999999997766666666666666666655554 46777799993211 1111 11
Q ss_pred ccccCCEEEEEEECCCH--HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHH---HHHHHHHhCCcEEEec
Q psy8722 84 YYRMSNGAVLVYDITDE--DSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQED---AEKYAQSVGAVHFHTS 158 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~S 158 (223)
..+--.+++|++|+++. .|......++..+...+. +.|+|+|+||+|+-....+..+. ...+...-+++++++|
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 22334678999999884 456666667777776664 57999999999985554444322 3333444458999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8722 159 AKMNRGIEEMFLELSQRMLEKAQEFDLAKA 188 (223)
Q Consensus 159 a~~~~~i~~~~~~i~~~~~~~~~~~~~~~~ 188 (223)
+.+.+|+..+....+++++..+-+..+...
T Consensus 323 ~~~eegVm~Vrt~ACe~LLa~RVE~Klks~ 352 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALLAARVEQKLKSE 352 (620)
T ss_pred ccchhceeeHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999998877655543
No 264
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.53 E-value=4.2e-14 Score=108.75 Aligned_cols=161 Identities=15% Similarity=0.152 Sum_probs=106.4
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEE-EECCeEEEEEEEeCCCccc-------ccccccc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKL-NIAGKRLNLAIWDTAGQER-------FHALGPI 83 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~-------~~~~~~~ 83 (223)
....++|+++|.+|+|||||||+|......+-..-..+.+...+.. .+++ -.+.+||+||-++ +......
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 4578999999999999999999999554444333333333333332 2333 4688999999543 5555667
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc-------cCCHHHHHHH----------
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR-------TVMQEDAEKY---------- 146 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------~~~~~~~~~~---------- 146 (223)
++...|.++++.++.++.--.....|.+.+... .+.++++++|..|....- ......++++
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HhhhccEEEEeccCCCccccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 788899999999999875333333344443332 237999999999974320 0111111111
Q ss_pred -HHHhCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 147 -AQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 147 -~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
+++ -.|++.++...+.|++++...+++.+.
T Consensus 192 ~~q~-V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 192 LFQE-VKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHhh-cCCeEEeccccCccHHHHHHHHHHhCc
Confidence 122 137888889999999999999998874
No 265
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.52 E-value=1.7e-13 Score=113.65 Aligned_cols=83 Identities=17% Similarity=0.166 Sum_probs=56.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEE---------------------EC-CeEEEEEEEeCCC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLN---------------------IA-GKRLNLAIWDTAG 73 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~i~D~~G 73 (223)
++|+++|.+|+|||||+|+|++........+..+.+....... .+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 6899999999999999999997666543334333322222211 11 1236789999999
Q ss_pred cc----ccccccccc---cccCCEEEEEEECC
Q psy8722 74 QE----RFHALGPIY---YRMSNGAVLVYDIT 98 (223)
Q Consensus 74 ~~----~~~~~~~~~---~~~~d~~i~v~d~~ 98 (223)
.. ....+...+ ++++|++++|+|..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 43 233333444 78999999999997
No 266
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.3e-13 Score=111.45 Aligned_cols=155 Identities=21% Similarity=0.177 Sum_probs=101.5
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhh--CCCCC-----------------------------CCccccceeEEEEEEEE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVE--DKFNE-----------------------------KHITTLQASFLNKKLNI 59 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 59 (223)
..++.++++++|+..+|||||+-+|+. +.++. +... |.++......+
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERer--GvTi~~~~~~f 80 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERER--GVTIDVAHSKF 80 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhc--ceEEEEEEEEe
Confidence 457899999999999999999988762 22211 1112 33333334444
Q ss_pred CCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHH-----HHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 60 AGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSF-----EKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-----~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
....+.+.|+|+||+.+|...+-.-..+||++|+|+|+.+.+.- ....+-...+.+..+ -..++|++||+|+.+
T Consensus 81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~ 159 (428)
T COG5256 81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVS 159 (428)
T ss_pred ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccc
Confidence 44556788999999999888777778899999999999986311 111122222333333 246788899999865
Q ss_pred cccCCHHH----HHHHHHHhC-----CcEEEecCCCCCCHHHH
Q psy8722 135 QRTVMQED----AEKYAQSVG-----AVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 135 ~~~~~~~~----~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 168 (223)
-++...++ +..+.+..| ++|+.+|+..|+|+.+.
T Consensus 160 wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 160 WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 33322333 333444444 46999999999998764
No 267
>KOG3905|consensus
Probab=99.50 E-value=7.1e-13 Score=103.98 Aligned_cols=164 Identities=18% Similarity=0.261 Sum_probs=117.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEE--CCeEEEEEEEeCCCccccccccccccccC--
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNI--AGKRLNLAIWDTAGQERFHALGPIYYRMS-- 88 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-- 88 (223)
+..-+|+|+|..++||||||.+|.+.. ......+.+|..-.+.- .+...++.+|-..|......+....+...
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ 126 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSL 126 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCc
Confidence 456689999999999999999998654 23455555554443322 23334677888888665544444333222
Q ss_pred --CEEEEEEECCCHHH-HHHHHHHHHHHHHHcCC----------------------------------------------
Q psy8722 89 --NGAVLVYDITDEDS-FEKVKNWVKELKKMLGN---------------------------------------------- 119 (223)
Q Consensus 89 --d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~---------------------------------------------- 119 (223)
..+|++.|+++++. .+.+..|...+..+...
T Consensus 127 aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de 206 (473)
T KOG3905|consen 127 AETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADE 206 (473)
T ss_pred cceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccc
Confidence 47799999999965 46677787766554321
Q ss_pred ---------------CCeEEEEEeCCCc----ccccc-------CCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 120 ---------------DICLTIAGNKIDL----EKQRT-------VMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 120 ---------------~~p~ivv~nK~Dl----~~~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
++|++||+||+|. +.+.+ .....+..||..+|...+++|++...|++-+...|.
T Consensus 207 ~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYiv 286 (473)
T KOG3905|consen 207 HVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIV 286 (473)
T ss_pred ccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHH
Confidence 7999999999996 22222 233557889999999999999999999999999999
Q ss_pred HHHHHH
Q psy8722 174 QRMLEK 179 (223)
Q Consensus 174 ~~~~~~ 179 (223)
++++..
T Consensus 287 hr~yG~ 292 (473)
T KOG3905|consen 287 HRSYGF 292 (473)
T ss_pred HHhcCc
Confidence 988543
No 268
>PRK12740 elongation factor G; Reviewed
Probab=99.49 E-value=3.7e-13 Score=119.52 Aligned_cols=107 Identities=18% Similarity=0.166 Sum_probs=74.3
Q ss_pred ECCCCCcHHHHHHHHhhCCCC--------C----------CCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccc
Q psy8722 21 LGEGCVGKTSVVLRYVEDKFN--------E----------KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGP 82 (223)
Q Consensus 21 iG~~~~GKSsli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 82 (223)
+|+.++|||||+++|+...-. . +...+++.......+.+++ +.+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 699999999999999632111 0 0012333333344445555 6788999999988777777
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
.++..+|++++|+|.++........-|. .+. ..++|+++++||+|+.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~---~~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVWR-QAE---KYGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHH---HcCCCEEEEEECCCCC
Confidence 7889999999999998865554433332 222 2368999999999974
No 269
>PRK00007 elongation factor G; Reviewed
Probab=99.47 E-value=1.3e-12 Score=116.10 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=88.7
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhh--CCCCC----------------CCccccceeEEEEEEEECCeEEEEEEEeCC
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVE--DKFNE----------------KHITTLQASFLNKKLNIAGKRLNLAIWDTA 72 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (223)
+.++-.||+++|+.++|||||+++|+. +.... +....++.+.....+.+++ ..+.++|||
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTP 83 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTP 83 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCC
Confidence 455677999999999999999999973 11100 0133445555455556665 567778999
Q ss_pred CccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC
Q psy8722 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA 152 (223)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 152 (223)
|+..|.......+..+|++++|+|+..........-|. .+. ..++|.++++||+|+.... ......++...++.
T Consensus 84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~---~~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~ 157 (693)
T PRK00007 84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QAD---KYKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGA 157 (693)
T ss_pred CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHH---HcCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCC
Confidence 99887766777788999999999988764333322222 222 2368999999999986533 23334444444443
No 270
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.46 E-value=9.8e-14 Score=123.61 Aligned_cols=118 Identities=17% Similarity=0.160 Sum_probs=80.2
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCC---------------CCCC---CccccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDK---------------FNEK---HITTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
.++-.||+++|+.++|||||+++|+... +.+. ...|+........+.+++..+.+.+|||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 4566799999999999999999997421 1110 111222222222333556668899999999
Q ss_pred ccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
+.+|.......++.+|++|+|+|+.+....+...-|.. ....+.|.++++||+|..
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~----~~~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ----ALKENVKPVLFINKVDRL 151 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH----HHHcCCCEEEEEEChhcc
Confidence 99888778888999999999999987432222222222 222357888999999974
No 271
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.45 E-value=6.8e-13 Score=92.74 Aligned_cols=114 Identities=28% Similarity=0.332 Sum_probs=83.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCc-cccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHI-TTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998776654433 3333 222334566788999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (223)
++..+..+++.+ |...+....+.+.|.++++||.|+.....+..+.. ..++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 999999998766 87777665556688999999999854434333332 245677888898874
No 272
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.45 E-value=3.3e-12 Score=107.55 Aligned_cols=166 Identities=17% Similarity=0.269 Sum_probs=118.6
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC--CeEEEEEEEeCCCccccccccccccccC
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTAGQERFHALGPIYYRMS 88 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (223)
.....-+|+|+|..++||||||.+|.+.. ....+.+.+|....+.-+ +...++.+|-..|...+..+....+...
T Consensus 21 ~~~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~ 97 (472)
T PF05783_consen 21 KLPSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPE 97 (472)
T ss_pred cCCCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcc
Confidence 33556799999999999999999987543 334566766655554322 2334789999988666666665554432
Q ss_pred ----CEEEEEEECCCHHHH-HHHHHHHHHHHHHcCC--------------------------------------------
Q psy8722 89 ----NGAVLVYDITDEDSF-EKVKNWVKELKKMLGN-------------------------------------------- 119 (223)
Q Consensus 89 ----d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------------------------------- 119 (223)
-++|+|.|++.|+.+ +.+..|+..++.+...
T Consensus 98 ~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~ 177 (472)
T PF05783_consen 98 NLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSS 177 (472)
T ss_pred cccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccc
Confidence 478899999998765 4566676555443210
Q ss_pred ------------------CCeEEEEEeCCCcc----ccc-------cCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 120 ------------------DICLTIAGNKIDLE----KQR-------TVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 120 ------------------~~p~ivv~nK~Dl~----~~~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
++|++||++|.|.- ... ....+.++.+|..+|+.++++|++...+++-++.
T Consensus 178 ~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~ 257 (472)
T PF05783_consen 178 DDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYK 257 (472)
T ss_pred ccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHH
Confidence 58999999999952 111 1233557788899999999999999999999998
Q ss_pred HHHHHHHHH
Q psy8722 171 ELSQRMLEK 179 (223)
Q Consensus 171 ~i~~~~~~~ 179 (223)
.|.+.++..
T Consensus 258 yi~h~l~~~ 266 (472)
T PF05783_consen 258 YILHRLYGF 266 (472)
T ss_pred HHHHHhccC
Confidence 888877543
No 273
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.44 E-value=2.9e-12 Score=116.36 Aligned_cols=142 Identities=22% Similarity=0.275 Sum_probs=97.2
Q ss_pred cHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeE----------------EEEEEEeCCCccccccccccccccCCE
Q psy8722 27 GKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKR----------------LNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 27 GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+||||+.++.+.........+++.++.-..+..+... -.+.||||||++.|..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 4999999999777776666666666655554443110 127899999999998887777888999
Q ss_pred EEEEEECCC---HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC----------------HHHHH----HH-
Q psy8722 91 AVLVYDITD---EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM----------------QEDAE----KY- 146 (223)
Q Consensus 91 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----------------~~~~~----~~- 146 (223)
+++|+|+++ +.+++.+. .+.. .++|+++++||+|+...+... .++.. ++
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~ 625 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI 625 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 999999987 44444433 2222 258999999999985332210 01110 01
Q ss_pred --HHHh---------------CCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 147 --AQSV---------------GAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 147 --~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
.... .++++.+||++|+|+++++..|...
T Consensus 626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 1111 2478999999999999999877654
No 274
>PRK09866 hypothetical protein; Provisional
Probab=99.44 E-value=3.9e-12 Score=108.87 Aligned_cols=109 Identities=16% Similarity=0.131 Sum_probs=71.6
Q ss_pred EEEEEEeCCCcccc-----ccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC
Q psy8722 64 LNLAIWDTAGQERF-----HALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV 138 (223)
Q Consensus 64 ~~~~i~D~~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (223)
..+.|+||||.... .......+..+|+++||+|.....+... ......+... +...|+++|+||+|+.+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccc
Confidence 35788899995432 1123346899999999999987433332 1223334332 223599999999998543322
Q ss_pred CHHHHHHHHHH----hCC---cEEEecCCCCCCHHHHHHHHHH
Q psy8722 139 MQEDAEKYAQS----VGA---VHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 139 ~~~~~~~~~~~----~~~---~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
..+.+..+... .++ .+|.+||+.|.|++.+++.|..
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 34455554322 222 5899999999999999988877
No 275
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.43 E-value=3.5e-13 Score=91.32 Aligned_cols=136 Identities=21% Similarity=0.165 Sum_probs=94.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc----ccccccccccccCCEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE----RFHALGPIYYRMSNGAV 92 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i 92 (223)
||+++|..|+|||||.+++.+...... .|...+ +++. -.+||||.- .+..........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--KTQAve-------~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--KTQAVE-------FNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc--ccceee-------ccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 799999999999999999986544322 222222 2221 145999943 22222333457899999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~ 171 (223)
+|-.++++++.- -..+.... ..|+|-+++|.||.+.. ..+..+++..+.|. ++|++|+.++.|+++++..
T Consensus 70 ~v~~and~~s~f-----~p~f~~~~--~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRF-----PPGFLDIG--VKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccC-----Cccccccc--ccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 999999986521 11122222 35699999999997532 45677888888887 7899999999999999987
Q ss_pred HHH
Q psy8722 172 LSQ 174 (223)
Q Consensus 172 i~~ 174 (223)
+..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 754
No 276
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.42 E-value=2.5e-12 Score=105.30 Aligned_cols=157 Identities=18% Similarity=0.179 Sum_probs=106.1
Q ss_pred eEEEEECCCCCcHHHHHHHHh--hCCCCCCC------------ccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV--EDKFNEKH------------ITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG 81 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~--~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 81 (223)
-||++|-+..-|||||+..|+ ++.|.... ...-|.++..+...++...+.+.|.|||||.+|-...
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 489999999999999999998 44443321 1122334444433344444778888999999999999
Q ss_pred ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC-HHHHHHHHHH-------hCCc
Q psy8722 82 PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM-QEDAEKYAQS-------VGAV 153 (223)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~-------~~~~ 153 (223)
+..+..+|++++++|+.+.-.. +..--+.+....+.+.|||+||+|-++.+... .++...++.. +++|
T Consensus 86 ERvl~MVDgvlLlVDA~EGpMP----QTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP 161 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGPMP----QTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP 161 (603)
T ss_pred hhhhhhcceEEEEEEcccCCCC----chhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence 9999999999999999984321 11122344444577888999999987665321 1334444433 4578
Q ss_pred EEEecCCCCC----------CHHHHHHHHHHHH
Q psy8722 154 HFHTSAKMNR----------GIEEMFLELSQRM 176 (223)
Q Consensus 154 ~~~~Sa~~~~----------~i~~~~~~i~~~~ 176 (223)
+++.|+..|. ++.-+|+.|++.+
T Consensus 162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 162 IVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred EEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 8998887663 5566666666554
No 277
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.41 E-value=4.2e-12 Score=99.24 Aligned_cols=121 Identities=13% Similarity=0.128 Sum_probs=72.3
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCC-CCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc---c------
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNE-KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA---L------ 80 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~------ 80 (223)
.....++|+|+|.+|+|||||+|+|++..... ......+..........++ ..+.+|||||...... .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence 34678999999999999999999999655432 2222233333333334455 5678999999553310 0
Q ss_pred -ccccc--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCC--CeEEEEEeCCCcc
Q psy8722 81 -GPIYY--RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND--ICLTIAGNKIDLE 133 (223)
Q Consensus 81 -~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~Dl~ 133 (223)
...++ ...|++++|..++....-..-...+..+...++.. .++++|.||+|..
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 11222 25688888876664321111123444444443322 4689999999974
No 278
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.40 E-value=1.1e-11 Score=98.63 Aligned_cols=119 Identities=14% Similarity=0.144 Sum_probs=70.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc-------ccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG-------PIY 84 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~~~ 84 (223)
.+.++|+++|.+|+||||++|+|++.... .+...+.+...........+ ..+.+|||||........ ..+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 57899999999999999999999965532 11122222222222223444 578899999955432111 111
Q ss_pred c--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCC--CCeEEEEEeCCCcc
Q psy8722 85 Y--RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN--DICLTIAGNKIDLE 133 (223)
Q Consensus 85 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~ 133 (223)
+ ...|+++||..++....-..-...+..+...++. -.+++|+.|+.|..
T Consensus 114 l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 1 2689999997655321111112334444444432 24689999999964
No 279
>KOG1707|consensus
Probab=99.39 E-value=1.5e-11 Score=103.27 Aligned_cols=168 Identities=16% Similarity=0.287 Sum_probs=125.6
Q ss_pred CCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q psy8722 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87 (223)
Q Consensus 8 ~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (223)
......+-+++.++|+.++|||.|++.+.+..+..++..+....+....+...+....+++-|.+-. ....+...- ..
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~ 495 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AA 495 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ce
Confidence 3444567889999999999999999999998888877777777777777777777777778888764 222222222 67
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHH
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIE 166 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 166 (223)
+|+++++||.+++.+|..+...++.-... ...|+++|++|.|+....+...-.-.+++.++++ +.+..|.+.... .
T Consensus 496 cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~ 572 (625)
T KOG1707|consen 496 CDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-N 572 (625)
T ss_pred eeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-c
Confidence 99999999999999999888755554433 5789999999999976554333223889999998 356677774333 8
Q ss_pred HHHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEKA 180 (223)
Q Consensus 167 ~~~~~i~~~~~~~~ 180 (223)
++|..|..+.....
T Consensus 573 ~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 573 ELFIKLATMAQYPH 586 (625)
T ss_pred hHHHHHHHhhhCCC
Confidence 89998888775543
No 280
>KOG0090|consensus
Probab=99.39 E-value=4.4e-12 Score=93.98 Aligned_cols=115 Identities=21% Similarity=0.181 Sum_probs=75.8
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccc---cCCE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYR---MSNG 90 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~ 90 (223)
++-.|+++|+.++|||+|+-+|..+.+..... ...-....+..+.. .+.++|.|||.+.+.....++. .+-+
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt---Siepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~aka 111 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGTVT---SIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKA 111 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCccCeee---eeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHcccccccee
Confidence 33579999999999999999998664432211 11111222233333 3678899999987766666665 7899
Q ss_pred EEEEEECCCH-HHHHHHH-HHHHHHHHH--cCCCCeEEEEEeCCCcc
Q psy8722 91 AVLVYDITDE-DSFEKVK-NWVKELKKM--LGNDICLTIAGNKIDLE 133 (223)
Q Consensus 91 ~i~v~d~~~~-~s~~~~~-~~~~~~~~~--~~~~~p~ivv~nK~Dl~ 133 (223)
++||+|...- .....+. -++..+... ....+|+++..||.|+-
T Consensus 112 iVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 112 IVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred EEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 9999997642 2223333 344444444 35678999999999983
No 281
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.38 E-value=2.6e-12 Score=100.42 Aligned_cols=96 Identities=23% Similarity=0.288 Sum_probs=78.7
Q ss_pred cccccccccccccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCc
Q psy8722 75 ERFHALGPIYYRMSNGAVLVYDITDED-SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV 153 (223)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (223)
+++..+.+.++.++|++++|||+.++. ++..+.+|+..+.. .++|+++|+||+||.....+..+....+ ..++.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 667778888999999999999999887 89999999987654 4689999999999965444333344444 457889
Q ss_pred EEEecCCCCCCHHHHHHHHHH
Q psy8722 154 HFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 154 ~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
++++||+++.|++++|+.+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999988764
No 282
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.37 E-value=2.2e-11 Score=98.71 Aligned_cols=118 Identities=16% Similarity=0.199 Sum_probs=81.9
Q ss_pred EEEEEEEeCCCccccccccccccccCCEEEEEEECCCHH-------HHHHHHHHHHHHHHHcC----CCCeEEEEEeCCC
Q psy8722 63 RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDED-------SFEKVKNWVKELKKMLG----NDICLTIAGNKID 131 (223)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D 131 (223)
.+.+.+||++|+...+..|..++.+++++|+|+|+++.. ..+.+..-+..+..... .++|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 477899999999999999999999999999999998731 11233333333333222 4789999999999
Q ss_pred ccc----------------cccCCHHHHHHHHHH----------hCCcEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 132 LEK----------------QRTVMQEDAEKYAQS----------VGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 132 l~~----------------~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
+-. ......+.+..+... ..+..+.++|.+..++..+|+.+.+.++...
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 611 001233444444322 1233567899999999999999998887764
No 283
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.37 E-value=4.5e-12 Score=97.17 Aligned_cols=161 Identities=13% Similarity=0.171 Sum_probs=90.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCC--ccccceeEEEEEEEECCeEEEEEEEeCCCcccccc-------cc----c
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKH--ITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA-------LG----P 82 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~----~ 82 (223)
++|+|+|.+|+||||++|.+++....... ....+.........+++. .+.++||||-..... .. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~--~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGR--QVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTE--EEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecce--EEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999966554332 122333444444567774 466779999322111 01 1
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCC--CeEEEEEeCCCccccccC-------CHHHHHHHHHHhCCc
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND--ICLTIAGNKIDLEKQRTV-------MQEDAEKYAQSVGAV 153 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~Dl~~~~~~-------~~~~~~~~~~~~~~~ 153 (223)
....+.|++++|+.+.. -+-. -...+..+...+++. ..++||.|..|......+ ......++....+-.
T Consensus 79 ~~~~g~ha~llVi~~~r-~t~~-~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGR-FTEE-DREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHH-HHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCc-chHH-HHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 23456899999999983 2221 222333444444432 357888888775333221 012355666777777
Q ss_pred EEEecCC------CCCCHHHHHHHHHHHHHHHH
Q psy8722 154 HFHTSAK------MNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 154 ~~~~Sa~------~~~~i~~~~~~i~~~~~~~~ 180 (223)
|+..+.+ ....+.++++.|-+.+.+..
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 8777665 22456666666665555443
No 284
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.36 E-value=1e-11 Score=98.57 Aligned_cols=150 Identities=17% Similarity=0.181 Sum_probs=106.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC---------------------------------CCCccccceeEEEEEEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN---------------------------------EKHITTLQASFLNKKLNI 59 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~ 59 (223)
...+|.+.+|...=||||||-+|+.+.-. .+...+++.++..+++..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 45689999999999999999998632210 112445677777777766
Q ss_pred CCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC
Q psy8722 60 AGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM 139 (223)
Q Consensus 60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 139 (223)
+.++ |++-|||||++|.+.+..-...||++|+++|+... .....+-...+....+- ..+++.+||+||.+..+..
T Consensus 84 ~KRk--FIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLLGI-rhvvvAVNKmDLvdy~e~~ 158 (431)
T COG2895 84 EKRK--FIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLLGI-RHVVVAVNKMDLVDYSEEV 158 (431)
T ss_pred ccce--EEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHhCC-cEEEEEEeeecccccCHHH
Confidence 6654 56669999999988887777889999999999643 22222223334444432 5788889999997665433
Q ss_pred H----HHHHHHHHHhCC---cEEEecCCCCCCHHH
Q psy8722 140 Q----EDAEKYAQSVGA---VHFHTSAKMNRGIEE 167 (223)
Q Consensus 140 ~----~~~~~~~~~~~~---~~~~~Sa~~~~~i~~ 167 (223)
+ .+...|+..+++ .++.+||..|+|+-.
T Consensus 159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 3 445567788876 588999999999864
No 285
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.35 E-value=2e-11 Score=92.54 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=63.7
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHH
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDA 143 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 143 (223)
....++++.|......... .-++.+|.|+|+.+..+... .+...+ ...-++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 4556778888422111111 12688999999987655321 111111 122388999999874322233444
Q ss_pred HHHHHH--hCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 144 EKYAQS--VGAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 144 ~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
.+.... .+.+++++|+++|+|+.++|++|.+.++
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 444443 3468999999999999999999987654
No 286
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.34 E-value=5.6e-11 Score=97.16 Aligned_cols=118 Identities=18% Similarity=0.226 Sum_probs=80.7
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHH-------HHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCc
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDED-------SFEKVKNWVKELKKMLG----NDICLTIAGNKIDL 132 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl 132 (223)
+.+.+||++|+...+..|..++.+++++|||+|+++.. ....+..-+..+..... .+.|++|++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 66889999999999999999999999999999999731 11223333333333322 46899999999996
Q ss_pred ccc---------------ccCCHHHHHHHHH-----HhC------CcEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy8722 133 EKQ---------------RTVMQEDAEKYAQ-----SVG------AVHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 133 ~~~---------------~~~~~~~~~~~~~-----~~~------~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 181 (223)
-.. .....+.+.++.. ... +-.+.++|.+..++..+|+.+.+.++....
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l 338 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL 338 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence 210 0012333333332 111 234678899999999999999888887653
No 287
>PTZ00258 GTP-binding protein; Provisional
Probab=99.34 E-value=2.7e-11 Score=99.76 Aligned_cols=86 Identities=20% Similarity=0.211 Sum_probs=60.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeE---------------EEEEEEeCCCcccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKR---------------LNLAIWDTAGQERF 77 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~ 77 (223)
...++|+++|.||+|||||+|+|++........+.++.+.....+.+.+.. ..+.++|+||...-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 456799999999999999999999766665555666665555555444322 24788899994421
Q ss_pred c----ccc---ccccccCCEEEEEEECC
Q psy8722 78 H----ALG---PIYYRMSNGAVLVYDIT 98 (223)
Q Consensus 78 ~----~~~---~~~~~~~d~~i~v~d~~ 98 (223)
. .+. -..++++|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 111 22357899999999974
No 288
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.32 E-value=4.9e-12 Score=114.46 Aligned_cols=119 Identities=16% Similarity=0.168 Sum_probs=80.5
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCC--CC--------------CCccccceeEEEEEEEE--------------C
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKF--NE--------------KHITTLQASFLNKKLNI--------------A 60 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~--------------~ 60 (223)
++++-.||+|+|+.++|||||+++|+...- .. +.....+.......+.+ +
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 345667999999999999999999983221 11 00111122211122222 2
Q ss_pred CeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 61 GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
+..+.+.++||||+.+|.......++.+|++|+|+|+.+.-......-|... ...++|+++++||+|..
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~----~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA----LGERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHH----HHCCCCEEEEEECCccc
Confidence 2356778899999999988888888999999999999986443333333332 23478999999999974
No 289
>PTZ00416 elongation factor 2; Provisional
Probab=99.32 E-value=5.2e-12 Score=114.11 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=78.5
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCC--CC--------------CCccccceeEEEEEEEEC--------CeEEEEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKF--NE--------------KHITTLQASFLNKKLNIA--------GKRLNLA 67 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~ 67 (223)
.++-.||+++|+.++|||||+++|+...- .. +...+++.......+.+. +....+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 45566999999999999999999984221 10 001111222111222232 2246788
Q ss_pred EEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 68 IWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 68 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
++||||+.+|.......++.+|++|+|+|+.+.-......-| +.....++|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~----~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL----RQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH----HHHHHcCCCEEEEEEChhhh
Confidence 899999998888788888999999999999885433322222 22222468999999999985
No 290
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.31 E-value=6.8e-12 Score=112.21 Aligned_cols=118 Identities=17% Similarity=0.134 Sum_probs=77.8
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCC--CCC--------------CccccceeEEEEE--EEECCeEEEEEEEeCCC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKF--NEK--------------HITTLQASFLNKK--LNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~--~~~--------------~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~G 73 (223)
.++-.+|+++|+.++|||||+.+|+...- ... ....++....... +..++....+.|+||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 45566899999999999999999973221 110 0011122111112 22344457788999999
Q ss_pred ccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
+.+|.......++.+|++|+|+|+..........-|..... .+.|.++++||+|..
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH----cCCCeEEEEECchhh
Confidence 99988878888899999999999887533322222332222 246789999999974
No 291
>PRK13768 GTPase; Provisional
Probab=99.31 E-value=1.2e-11 Score=97.10 Aligned_cols=109 Identities=18% Similarity=0.169 Sum_probs=68.2
Q ss_pred EEEEEeCCCccccc---cccccccc---c--CCEEEEEEECCCHHHHHHHH--HHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 65 NLAIWDTAGQERFH---ALGPIYYR---M--SNGAVLVYDITDEDSFEKVK--NWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 65 ~~~i~D~~G~~~~~---~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
.+.+||+||+.... ..+..+++ . ++++++++|+.......... .|+..... ...++|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~-~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ-LRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH-HHcCCCEEEEEEhHhhcC
Confidence 58899999976532 22222222 2 88999999997644332222 12222221 123689999999999854
Q ss_pred cccCCHHHHHH----------------------------HHHHhC--CcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 135 QRTVMQEDAEK----------------------------YAQSVG--AVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 135 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
..+. +...+ .....+ .+++.+|+.++.|+++++++|.+.+
T Consensus 177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 3221 11111 122333 4789999999999999999998765
No 292
>KOG0458|consensus
Probab=99.26 E-value=7.4e-11 Score=99.12 Aligned_cols=159 Identities=21% Similarity=0.217 Sum_probs=103.2
Q ss_pred CCCCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCC-------------------------------CCCCccccceeEEE
Q psy8722 6 LDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKF-------------------------------NEKHITTLQASFLN 54 (223)
Q Consensus 6 ~~~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~ 54 (223)
++.+.++...++++++|+..+|||||+.+++...- .++... |+....
T Consensus 168 ~~~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERer--GvTm~v 245 (603)
T KOG0458|consen 168 IDEQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERER--GVTMDV 245 (603)
T ss_pred cccccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhc--ceeEEe
Confidence 44556667899999999999999999988752111 111122 333333
Q ss_pred EEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHH---HHHH---HHHHHHHHHHHcCCCCeEEEEEe
Q psy8722 55 KKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDED---SFEK---VKNWVKELKKMLGNDICLTIAGN 128 (223)
Q Consensus 55 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~---~~~~~~~~~~~~~~~~p~ivv~n 128 (223)
...+++.....+.|.|+||+..|......-...||++++|+|++... .|+. .++....++. .+ -..++|++|
T Consensus 246 ~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~-Lg-i~qlivaiN 323 (603)
T KOG0458|consen 246 KTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRS-LG-ISQLIVAIN 323 (603)
T ss_pred eeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHH-cC-cceEEEEee
Confidence 44444555567888899999999888777778899999999998632 2221 1112222222 22 346788899
Q ss_pred CCCccccccCCHHH----HHHHH-HHhC-----CcEEEecCCCCCCHHHH
Q psy8722 129 KIDLEKQRTVMQED----AEKYA-QSVG-----AVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 129 K~Dl~~~~~~~~~~----~~~~~-~~~~-----~~~~~~Sa~~~~~i~~~ 168 (223)
|.|+.+=.+-.+++ +..|. +..| +.|+.+|+..|+|+...
T Consensus 324 KmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 324 KMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 99985433323333 33344 3344 36899999999998654
No 293
>KOG1144|consensus
Probab=99.26 E-value=3.6e-11 Score=103.26 Aligned_cols=166 Identities=22% Similarity=0.218 Sum_probs=106.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC------------C----eEEEEEEEeCCCccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA------------G----KRLNLAIWDTAGQER 76 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~----~~~~~~i~D~~G~~~ 76 (223)
-+..-|||+|+..+|||-|+..+.+.........+++..+.-.++... + ..-.+.++||||++.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 345679999999999999999998766655544444333322222111 0 111377889999999
Q ss_pred cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc-----ccc-----------CCH
Q psy8722 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK-----QRT-----------VMQ 140 (223)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-----~~~-----------~~~ 140 (223)
|..++......||.+|+|+|+...--...+.. ++.++. .+.|+||.+||+|--- .+. ...
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlepqtiES-i~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~ 628 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIES-INLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQ 628 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCcchhHH-HHHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHH
Confidence 99999988899999999999987422222221 122333 4789999999999410 000 000
Q ss_pred HH--------HHHHHH-HhC-------------CcEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Q psy8722 141 ED--------AEKYAQ-SVG-------------AVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 141 ~~--------~~~~~~-~~~-------------~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 182 (223)
.+ +.+|+. .++ +.++.+||..|+||-+++-+|++.....+.+
T Consensus 629 ~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~ 692 (1064)
T KOG1144|consen 629 NEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE 692 (1064)
T ss_pred HHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH
Confidence 11 112211 111 1346699999999999999999887666544
No 294
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.26 E-value=7.4e-11 Score=90.14 Aligned_cols=150 Identities=16% Similarity=0.130 Sum_probs=85.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-C-----------CCcc----ccceeEEEEEEE------------------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-E-----------KHIT----TLQASFLNKKLN------------------ 58 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~-----------~~~~----~~~~~~~~~~~~------------------ 58 (223)
.....|+|+|+.|+|||||++++...... . .... ..+.. ...+.
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~--~~~l~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAP--AIQINTGKECHLDAHMVAHALED 97 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCc--EEEEcCCCcccCChHHHHHHHHH
Confidence 45678999999999999999998732110 0 0000 00000 00000
Q ss_pred ECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC
Q psy8722 59 IAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV 138 (223)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (223)
.......+.++|+.|.-... ..+....+..+.|+|+.+.... .... ... ...|.++++||+|+......
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~---~~~---~~~a~iiv~NK~Dl~~~~~~ 166 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKY---PGM---FKEADLIVINKADLAEAVGF 166 (207)
T ss_pred hccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhh---HhH---HhhCCEEEEEHHHccccchh
Confidence 00112467777888821100 1111234556778888754321 1111 111 13578999999998654322
Q ss_pred CHHHHHHHHHHhC--CcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 139 MQEDAEKYAQSVG--AVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 139 ~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
......+.....+ .+++.+|++++.|++++++++.+.
T Consensus 167 ~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 167 DVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 2344444444444 789999999999999999999764
No 295
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.25 E-value=2.3e-10 Score=93.31 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=57.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeE---------------EEEEEEeCCCccccc--
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKR---------------LNLAIWDTAGQERFH-- 78 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~-- 78 (223)
++|+++|.||+|||||+|+|++........+.++.+.....+.+.+.. ..+.+.|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999766555545666555544444444321 257888999954221
Q ss_pred --ccccc---ccccCCEEEEEEECC
Q psy8722 79 --ALGPI---YYRMSNGAVLVYDIT 98 (223)
Q Consensus 79 --~~~~~---~~~~~d~~i~v~d~~ 98 (223)
.+... .++.+|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11112 357899999999984
No 296
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.23 E-value=1.5e-10 Score=89.57 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=81.9
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
...+...|+++|++|+|||||++.+.............|. + .+ .......+.++||||.. .. .....+.+|+
T Consensus 35 ~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDv 106 (225)
T cd01882 35 EEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADL 106 (225)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HH-HHHHHHhcCE
Confidence 3566788999999999999999999854221111111111 1 11 11123467788999853 22 2233578999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeE-EEEEeCCCccccccCCH---HHHHH-HHHH--hCCcEEEecCCCCC
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICL-TIAGNKIDLEKQRTVMQ---EDAEK-YAQS--VGAVHFHTSAKMNR 163 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~~~---~~~~~-~~~~--~~~~~~~~Sa~~~~ 163 (223)
+++++|......... ..++..+.. .+.|. ++|+||+|+........ +++.+ +..+ -+.+++.+||+++-
T Consensus 107 VllviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 107 VLLLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEEEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 999999986443222 223333332 24674 55999999853221111 12222 2221 23589999998874
Q ss_pred CH
Q psy8722 164 GI 165 (223)
Q Consensus 164 ~i 165 (223)
.+
T Consensus 183 ~~ 184 (225)
T cd01882 183 RY 184 (225)
T ss_pred CC
Confidence 43
No 297
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.23 E-value=5.7e-10 Score=91.33 Aligned_cols=156 Identities=14% Similarity=0.170 Sum_probs=92.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC----CCC------------CCCccc-----cceeE---EEEEEE-ECCeEEEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED----KFN------------EKHITT-----LQASF---LNKKLN-IAGKRLNLA 67 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~----~~~------------~~~~~~-----~~~~~---~~~~~~-~~~~~~~~~ 67 (223)
.-++.|.|+|+.++|||||||+|.+. ... ++..++ +...+ ....+. .++-...+.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 44789999999999999999999876 222 111111 11222 111221 245556888
Q ss_pred EEeCCCccc--------ccc--c-------------------cccccc-cCCEEEEEE-ECCC----HHHH-HHHHHHHH
Q psy8722 68 IWDTAGQER--------FHA--L-------------------GPIYYR-MSNGAVLVY-DITD----EDSF-EKVKNWVK 111 (223)
Q Consensus 68 i~D~~G~~~--------~~~--~-------------------~~~~~~-~~d~~i~v~-d~~~----~~s~-~~~~~~~~ 111 (223)
++||+|-.. ... + ....+. .+++.|+|. |.+- ++.+ +.-.+|+.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 999999221 111 0 122334 789999998 6641 1222 33345667
Q ss_pred HHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC--CCCHHHHHHHHH
Q psy8722 112 ELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM--NRGIEEMFLELS 173 (223)
Q Consensus 112 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i~ 173 (223)
.+... ++|+++++|+.|-.... ..+...++..+++++++.+|+.. .+.+..+++.+.
T Consensus 175 eLk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 175 ELKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred HHHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 77664 79999999999932211 34445567777888877666542 234444444433
No 298
>KOG3887|consensus
Probab=99.22 E-value=7.4e-11 Score=89.23 Aligned_cols=167 Identities=19% Similarity=0.298 Sum_probs=104.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc---ccccccCCEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG---PIYYRMSNGA 91 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~---~~~~~~~d~~ 91 (223)
.-+|+++|...+||||+-.....+..+.+...-..... ...-.+.+..+.+.+||.||+..+..-. ...++.+.++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTsk-i~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSK-ITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCc-ccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 35599999999999998655444433332211111111 1111233455789999999988664332 5578999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCc-ccc------ccCCHHHHHHHH----HHhCCcEEEec
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKML--GNDICLTIAGNKIDL-EKQ------RTVMQEDAEKYA----QSVGAVHFHTS 158 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl-~~~------~~~~~~~~~~~~----~~~~~~~~~~S 158 (223)
|+|+|+.+. -.+.+..+...+.+.. ++++.+-|++.|.|- .+. +.+......+++ ....+.|+-+|
T Consensus 106 ifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 106 IFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 999999874 3455555555555543 478999999999994 222 111111112222 12233566666
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy8722 159 AKMNRGIEEMFLELSQRMLEKAQEFD 184 (223)
Q Consensus 159 a~~~~~i~~~~~~i~~~~~~~~~~~~ 184 (223)
.. ..++.++|..+.+.+.++.+--+
T Consensus 185 Iy-DHSIfEAFSkvVQkLipqLptLE 209 (347)
T KOG3887|consen 185 IY-DHSIFEAFSKVVQKLIPQLPTLE 209 (347)
T ss_pred ec-chHHHHHHHHHHHHHhhhchhHH
Confidence 55 67899999999999988876543
No 299
>KOG3886|consensus
Probab=99.22 E-value=4.9e-11 Score=89.57 Aligned_cols=164 Identities=18% Similarity=0.282 Sum_probs=101.3
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc-----cccccccccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF-----HALGPIYYRM 87 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~ 87 (223)
..-||+++|.+|+|||++=..+..+.. -....++.+.++.-....+-| +..+.+||++|++.+ .......+.+
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 346899999999999998544442221 122234455555444443333 267899999998843 2244567899
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCccc--cccCCHHHHHHHH----HHhCCcEEEecC
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML--GNDICLTIAGNKIDLEK--QRTVMQEDAEKYA----QSVGAVHFHTSA 159 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~----~~~~~~~~~~Sa 159 (223)
++++|+|||+...+-..++..+...+.... .+...+.+..+|.|+.. .+....+...+.. ...++.++.+|.
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 999999999998876666665555444433 25567888899999843 3333333333222 233345666665
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~~ 179 (223)
. ++.+-.+|..+...+.+.
T Consensus 162 w-Detl~KAWS~iv~~lipn 180 (295)
T KOG3886|consen 162 W-DETLYKAWSSIVYNLIPN 180 (295)
T ss_pred h-hHHHHHHHHHHHHhhCCC
Confidence 5 445666666666655433
No 300
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.22 E-value=4.3e-11 Score=97.61 Aligned_cols=163 Identities=13% Similarity=0.159 Sum_probs=77.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccce---eEEEEEEEECCeEEEEEEEeCCCccccccccc-----cc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQA---SFLNKKLNIAGKRLNLAIWDTAGQERFHALGP-----IY 84 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-----~~ 84 (223)
...++|+|+|.+|+|||||||.|.+-...+.....+|. +.....+.. ...-++.+||.||..-..-... .-
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 35789999999999999999999753332222222211 111111111 1112589999999542221112 23
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc--c-----cccCCH----HHHHHHH----HH
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE--K-----QRTVMQ----EDAEKYA----QS 149 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~-----~~~~~~----~~~~~~~----~~ 149 (223)
+...|.+|++.+-.=... .+ .+...+.+ .++|+++|-+|+|.. . ++.... +++++-+ ++
T Consensus 112 ~~~yD~fiii~s~rf~~n--dv-~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 112 FYRYDFFIIISSERFTEN--DV-QLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GGG-SEEEEEESSS--HH--HH-HHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred ccccCEEEEEeCCCCchh--hH-HHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 566798888777442221 11 12233443 378999999999961 1 111121 2222222 22
Q ss_pred hCC---cEEEecCCCCC--CHHHHHHHHHHHHHHHHHH
Q psy8722 150 VGA---VHFHTSAKMNR--GIEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 150 ~~~---~~~~~Sa~~~~--~i~~~~~~i~~~~~~~~~~ 182 (223)
.|+ ++|-+|..+-. +...+.+.+...+...+..
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~ 223 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH 223 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence 343 57888887654 4666666666665444433
No 301
>KOG0082|consensus
Probab=99.21 E-value=6.4e-10 Score=89.72 Aligned_cols=128 Identities=14% Similarity=0.230 Sum_probs=89.3
Q ss_pred EEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCH-------HHHHHHHHHHHHHHHHcC----CCC
Q psy8722 53 LNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDE-------DSFEKVKNWVKELKKMLG----NDI 121 (223)
Q Consensus 53 ~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~----~~~ 121 (223)
....+.+++ ..+.++|++||...+..|..++.+++++|||+++++- ..-+.+.+-+..+...++ .+.
T Consensus 186 ~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~t 263 (354)
T KOG0082|consen 186 VEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANT 263 (354)
T ss_pred eEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccC
Confidence 344555556 6778889999999999999999999999999999873 223445555556665554 468
Q ss_pred eEEEEEeCCCcc--------------cccc-CCHHHHHHHHH-----Hh-----CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 122 CLTIAGNKIDLE--------------KQRT-VMQEDAEKYAQ-----SV-----GAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 122 p~ivv~nK~Dl~--------------~~~~-~~~~~~~~~~~-----~~-----~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
++|+++||.|+= +-.. -..+++..+.. .+ .+-++.+.|.+..+|+.+|....+.+
T Consensus 264 siiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~I 343 (354)
T KOG0082|consen 264 SIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTI 343 (354)
T ss_pred cEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHH
Confidence 999999999971 1111 12334333332 11 12345678999999999999999988
Q ss_pred HHHHHH
Q psy8722 177 LEKAQE 182 (223)
Q Consensus 177 ~~~~~~ 182 (223)
.....+
T Consensus 344 i~~nlk 349 (354)
T KOG0082|consen 344 IQNNLK 349 (354)
T ss_pred HHHHHH
Confidence 876543
No 302
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.18 E-value=3.5e-10 Score=91.58 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=65.6
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC--CHH
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV--MQE 141 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~ 141 (223)
+.+.|+||+|...-... ....+|.++++.+.........+.. .+.. ..-++|+||+|+...... ...
T Consensus 149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHHHH
Confidence 67888999996533222 4567999999977444444433321 1111 233799999998543211 112
Q ss_pred HHHHHHHH-------hCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 142 DAEKYAQS-------VGAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 142 ~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
+....... +..+++.+|+.++.|++++++.|.+.+.
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22222222 2357999999999999999999998764
No 303
>KOG0461|consensus
Probab=99.17 E-value=5.5e-10 Score=88.71 Aligned_cols=162 Identities=19% Similarity=0.216 Sum_probs=95.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCC----C---CCCCccccceeEEEEEEEE-------CCeEEEEEEEeCCCccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDK----F---NEKHITTLQASFLNKKLNI-------AGKRLNLAIWDTAGQERFH 78 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~----~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~G~~~~~ 78 (223)
.-.+|+.++|+..+|||||.+++..-. | +.+....++.+.....+.+ ++....+.++|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 445999999999999999999986321 1 2222333444444444332 4566788999999986543
Q ss_pred cccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc--ccCCH-HHHHHHHHHh-----
Q psy8722 79 ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ--RTVMQ-EDAEKYAQSV----- 150 (223)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~-~~~~~~~~~~----- 150 (223)
+..-....-.|..++|+|+.....-+..+.++ +-... ....+||+||+|+-.+ +.-.. +..+++.+.+
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f 160 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF 160 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhh--hhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence 33322334458889999998754333333321 11121 2356788899986322 22111 2223333222
Q ss_pred --CCcEEEecCCCC----CCHHHHHHHHHHHHHH
Q psy8722 151 --GAVHFHTSAKMN----RGIEEMFLELSQRMLE 178 (223)
Q Consensus 151 --~~~~~~~Sa~~~----~~i~~~~~~i~~~~~~ 178 (223)
+.|++++|+..| +++.++.+.+..++.+
T Consensus 161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred CCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 258999999999 5666665555555543
No 304
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.17 E-value=4.9e-12 Score=98.25 Aligned_cols=112 Identities=20% Similarity=0.153 Sum_probs=58.6
Q ss_pred EEEEEeCCCcccccccccccc--------ccCCEEEEEEECCCHHHH-HHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc
Q psy8722 65 NLAIWDTAGQERFHALGPIYY--------RMSNGAVLVYDITDEDSF-EKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135 (223)
Q Consensus 65 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (223)
.+.++|||||.++...+.... ...-++++++|.....+. ..+..++..+......+.|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 678899999887654443322 345578889997654332 22333444444333347899999999998552
Q ss_pred cc-------C------------CHHHHHHHHHH---hC-C-cEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 136 RT-------V------------MQEDAEKYAQS---VG-A-VHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 136 ~~-------~------------~~~~~~~~~~~---~~-~-~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
.. . ......+++.. .+ . .++.+|+.+++++.+++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 10 0 00111122222 22 2 689999999999999998876654
No 305
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.17 E-value=3.3e-10 Score=90.12 Aligned_cols=138 Identities=18% Similarity=0.222 Sum_probs=73.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCC----------ccccceeEEEEEEEECCeEEEEEEEeCCCccc--------
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKH----------ITTLQASFLNKKLNIAGKRLNLAIWDTAGQER-------- 76 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------- 76 (223)
.++|+|+|.+|+|||||||.|.+....... ..+.........+.-++..+.+.++||||-..
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 689999999999999999999865543331 12222333333444567778999999999221
Q ss_pred ----------ccccc---------ccccccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc
Q psy8722 77 ----------FHALG---------PIYYRMSNGAVLVYDITDED-SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136 (223)
Q Consensus 77 ----------~~~~~---------~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (223)
|.... ...=..+|+++|.++.+... .-.++ ..+..+. ..+++|-|+.|.|.-...
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLS----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhc----ccccEEeEEecccccCHH
Confidence 00000 00012368999999987532 11122 2333333 358999999999963221
Q ss_pred c--CCHHHHHHHHHHhCCcEEEe
Q psy8722 137 T--VMQEDAEKYAQSVGAVHFHT 157 (223)
Q Consensus 137 ~--~~~~~~~~~~~~~~~~~~~~ 157 (223)
+ ...+.+.+-...+++.+|.-
T Consensus 159 el~~~k~~i~~~l~~~~I~~f~f 181 (281)
T PF00735_consen 159 ELQAFKQRIREDLEENNIKIFDF 181 (281)
T ss_dssp HHHHHHHHHHHHHHHTT--S---
T ss_pred HHHHHHHHHHHHHHHcCceeecc
Confidence 1 12233444556677776653
No 306
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=5.3e-10 Score=98.27 Aligned_cols=118 Identities=19% Similarity=0.160 Sum_probs=86.1
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh--CCCCC---CC-------------ccccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE--DKFNE---KH-------------ITTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~--~~~~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
.++--||.++|+..+|||||..+++. +.... .. ..+++.......+.+.+ .+.+.++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 56778999999999999999999872 22211 00 12233333344444554 46778889999
Q ss_pred ccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
|-+|.......++-+|++++|+|+.+.-..+.-.-|.+... .++|.++++||+|...
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRLG 142 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECccccc
Confidence 99999999999999999999999998655544444555444 4789999999999643
No 307
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.17 E-value=5.3e-10 Score=82.32 Aligned_cols=78 Identities=22% Similarity=0.207 Sum_probs=57.1
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHcCCC--CeEEEEEeCCCccccccCCHHHHHHHHHHhC--CcEEEecCCCCCC
Q psy8722 89 NGAVLVYDITDEDSFEKVKNWVKELKKMLGND--ICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG--AVHFHTSAKMNRG 164 (223)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~ 164 (223)
+.-|+|+|....+- +.+...+. ..=++|+||.|+...-....+...+-+++.+ .+++++|+++|+|
T Consensus 119 ~~~v~VidvteGe~----------~P~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G 188 (202)
T COG0378 119 HLRVVVIDVTEGED----------IPRKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEG 188 (202)
T ss_pred ceEEEEEECCCCCC----------CcccCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcC
Confidence 47899999987642 11111111 1348999999997776666677777777665 5899999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRM 176 (223)
Q Consensus 165 i~~~~~~i~~~~ 176 (223)
++++++|+....
T Consensus 189 ~~~~~~~i~~~~ 200 (202)
T COG0378 189 LDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHHhhc
Confidence 999999887654
No 308
>KOG0705|consensus
Probab=99.16 E-value=1.3e-10 Score=96.90 Aligned_cols=169 Identities=22% Similarity=0.406 Sum_probs=126.1
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
+.+-+++|+.|+|..++|||+|+++++...+.....+ .+..| ...+.+.+....+.+.|.+|+.. ..|-..+|
T Consensus 25 srsipelk~givg~~~sgktalvhr~ltgty~~~e~~-e~~~~-kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvd 97 (749)
T KOG0705|consen 25 SRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESP-EGGRF-KKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVD 97 (749)
T ss_pred ecccchhheeeeecccCCceeeeeeeccceeccccCC-cCccc-eeeEEeeccceEeeeecccCCch-----hhhhhhcc
Confidence 4567899999999999999999999998888766443 34444 45555677777888889888432 34567799
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCcc--ccccCCHHHHHHHHHH-hCCcEEEecCCCCCCH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLE--KQRTVMQEDAEKYAQS-VGAVHFHTSAKMNRGI 165 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 165 (223)
++||||.+.+..+|+.+..+...+..... ..+|+++++++.-.. ..+.+......+++.. ..+.+|++.+..|-++
T Consensus 98 avIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv 177 (749)
T KOG0705|consen 98 AVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNV 177 (749)
T ss_pred ceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhH
Confidence 99999999999999999887776665433 457888888874432 2344444444444444 4468999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRMLEKAQEFDL 185 (223)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~~~ 185 (223)
...|+.+..++...++....
T Consensus 178 ~rvf~~~~~k~i~~~~~qq~ 197 (749)
T KOG0705|consen 178 ERVFQEVAQKIVQLRKYQQL 197 (749)
T ss_pred HHHHHHHHHHHHHHHhhhhc
Confidence 99999999998887555433
No 309
>KOG1532|consensus
Probab=99.15 E-value=2.5e-09 Score=82.57 Aligned_cols=121 Identities=15% Similarity=0.148 Sum_probs=69.7
Q ss_pred EEEEEEeCCCccccc-cc-cccc------cccCCEEEEEEECCCHHHHHH-HHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 64 LNLAIWDTAGQERFH-AL-GPIY------YRMSNGAVLVYDITDEDSFEK-VKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~-~~-~~~~------~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
+...++||||+-... .. .... -....+++||+|.....+... +...+=.-........|+|++.||.|+.+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d 195 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSD 195 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccc
Confidence 567788999965321 11 1111 123467888888655322222 11211112222345799999999999854
Q ss_pred c-----ccCCHHHHHHHHHH---------------------hCCcEEEecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy8722 135 Q-----RTVMQEDAEKYAQS---------------------VGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFD 184 (223)
Q Consensus 135 ~-----~~~~~~~~~~~~~~---------------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~ 184 (223)
. +.-..+..++..+. .++..+-+|+.+|.|.+++|..+.+.+-++...+.
T Consensus 196 ~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~yk 271 (366)
T KOG1532|consen 196 SEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEYK 271 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHhh
Confidence 3 11111222111111 13467889999999999999999988876665543
No 310
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.15 E-value=5.3e-10 Score=88.33 Aligned_cols=81 Identities=15% Similarity=0.102 Sum_probs=56.3
Q ss_pred EEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeE---------------EEEEEEeCCCccccc----
Q psy8722 18 VVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKR---------------LNLAIWDTAGQERFH---- 78 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~---- 78 (223)
|+++|.||+|||||+|+|++........++++.+.....+.+.+.. ..+.++|+||...-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999766665555666655555555554431 258899999944211
Q ss_pred ccccc---ccccCCEEEEEEECC
Q psy8722 79 ALGPI---YYRMSNGAVLVYDIT 98 (223)
Q Consensus 79 ~~~~~---~~~~~d~~i~v~d~~ 98 (223)
.+... .++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 11112 247799999999874
No 311
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.14 E-value=1.8e-10 Score=84.94 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=43.3
Q ss_pred EEEEEeCCCccc----cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCC
Q psy8722 65 NLAIWDTAGQER----FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKI 130 (223)
Q Consensus 65 ~~~i~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 130 (223)
.+.|+||||-.. ....+..+++.+|++|+|.+++...+-.....|....... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 478889999542 2345677789999999999999866555555444444433 34588888984
No 312
>KOG0468|consensus
Probab=99.13 E-value=3.1e-10 Score=96.71 Aligned_cols=118 Identities=24% Similarity=0.260 Sum_probs=88.5
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCc-----------------cccceeEEEEEEE---ECCeEEEEEEEe
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHI-----------------TTLQASFLNKKLN---IAGKRLNLAIWD 70 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~---~~~~~~~~~i~D 70 (223)
.+..-.+++++|+-+.|||+|+..|.....+.... .+.+....+.++- .++..+-+.+.|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 35667899999999999999999998666644321 1122223333332 356778899999
Q ss_pred CCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCc
Q psy8722 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132 (223)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (223)
||||..|.......++.+|++++|+|+.+.-++..-+ .+....+.+.|+.+|+||.|.
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr----~ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER----IIKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH----HHHHHHhccCcEEEEEehhHH
Confidence 9999999999999999999999999999887665543 234444457899999999994
No 313
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=5.5e-10 Score=91.17 Aligned_cols=134 Identities=17% Similarity=0.130 Sum_probs=92.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHh--hCCCCCCC------------------ccccceeEEEEEEEECCeEEEEEEEeCC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYV--EDKFNEKH------------------ITTLQASFLNKKLNIAGKRLNLAIWDTA 72 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~--~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (223)
.++-.-++|-+|.+|||||-..|+ ++.....- ...-|..++...+.++.....+.+.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 345567899999999999999986 32221100 0112455566666666666788889999
Q ss_pred CccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC
Q psy8722 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA 152 (223)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 152 (223)
||++|..-...-+.-+|.+++|+|+...---.. +.++.-..-.++|++-++||.|-+... +.+...++.+.+++
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT----~KLfeVcrlR~iPI~TFiNKlDR~~rd--P~ELLdEiE~~L~i 163 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT----LKLFEVCRLRDIPIFTFINKLDREGRD--PLELLDEIEEELGI 163 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHH----HHHHHHHhhcCCceEEEeeccccccCC--hHHHHHHHHHHhCc
Confidence 999999888888888999999999986432221 122322233589999999999964433 45666666666654
No 314
>KOG0410|consensus
Probab=99.10 E-value=6.9e-11 Score=92.96 Aligned_cols=158 Identities=15% Similarity=0.105 Sum_probs=105.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc---------cccccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE---------RFHALGPI 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~ 83 (223)
...--|.++|+.|+||||||+.|+.....+....+.+.+.+.+....+.+ ..+.+.||.|-- .|.+...
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATLe- 253 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQATLE- 253 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHHHH-
Confidence 34457899999999999999999966666666666666665665555443 245677999921 1222222
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe----EEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecC
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC----LTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p----~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
-...+|.++.|.|++.|..-......+..++...=+..| ++=|-||+|.+..... ...++ .+-+|+
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e--------~E~n~--~v~isa 323 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE--------EEKNL--DVGISA 323 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc--------cccCC--cccccc
Confidence 236789999999999998766666666666554222223 3455688886543321 12222 577899
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~~~~~ 182 (223)
.+|+|++++.+.+-.++......
T Consensus 324 ltgdgl~el~~a~~~kv~~~t~~ 346 (410)
T KOG0410|consen 324 LTGDGLEELLKAEETKVASETTV 346 (410)
T ss_pred ccCccHHHHHHHHHHHhhhhhee
Confidence 99999999998888777655433
No 315
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.09 E-value=1.4e-09 Score=93.72 Aligned_cols=119 Identities=13% Similarity=0.191 Sum_probs=72.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCC-CCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc------c----c
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDK-FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA------L----G 81 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~----~ 81 (223)
...++|+|+|.+|+||||++|.|++.. +........+..........++ ..+.|+||||...... . .
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 456899999999999999999999654 3332221112222222233455 4678889999553210 1 1
Q ss_pred ccccc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCC--CeEEEEEeCCCcc
Q psy8722 82 PIYYR--MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND--ICLTIAGNKIDLE 133 (223)
Q Consensus 82 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~Dl~ 133 (223)
..++. .+|++|+|..+........-..++..+...++.. ..+||+.|+.|..
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~l 249 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASA 249 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccC
Confidence 11323 4799999998764332222235666666666533 4578888998864
No 316
>KOG1486|consensus
Probab=99.08 E-value=9.2e-09 Score=78.52 Aligned_cols=89 Identities=16% Similarity=0.167 Sum_probs=61.4
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc-------ccccccccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF-------HALGPIYYR 86 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~ 86 (223)
-..+|+++|-|.+|||||+..++.........-+++.+..+..+.+++. .+++.|.||.-.- -+..-...+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEee
Confidence 3569999999999999999999844433333334455555667777884 5677799993221 112234557
Q ss_pred cCCEEEEEEECCCHHHHH
Q psy8722 87 MSNGAVLVYDITDEDSFE 104 (223)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~ 104 (223)
.||.+++|.|+...+.-.
T Consensus 139 taDlilMvLDatk~e~qr 156 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQR 156 (364)
T ss_pred cccEEEEEecCCcchhHH
Confidence 899999999998765433
No 317
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.07 E-value=1.4e-09 Score=87.73 Aligned_cols=104 Identities=20% Similarity=0.141 Sum_probs=63.8
Q ss_pred EEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCH--
Q psy8722 63 RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQ-- 140 (223)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-- 140 (223)
.+.+.|+||+|..... ......+|.++++.... +.+.+......+. .+|.++++||+|+........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHH
Confidence 3678889999954222 12456678888885433 2233333333232 467899999999864322110
Q ss_pred H----HHHHHHH---HhCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 141 E----DAEKYAQ---SVGAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 141 ~----~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
. ....+.. .+..+++.+|++++.|+++++++|.+.+.
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0 0011111 12346899999999999999999988743
No 318
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=4.3e-10 Score=88.47 Aligned_cols=165 Identities=16% Similarity=0.158 Sum_probs=107.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh---CCCCCCCccccceeEEEEEEE------------------EC-----CeE-EE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE---DKFNEKHITTLQASFLNKKLN------------------IA-----GKR-LN 65 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~---~~~~~~~~~~~~~~~~~~~~~------------------~~-----~~~-~~ 65 (223)
++++||.++|+..-|||||..+|.+ ..++++....++....+.... .. ... -.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 7899999999999999999999863 233332222222211110000 00 111 25
Q ss_pred EEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc--CCHHHH
Q psy8722 66 LAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT--VMQEDA 143 (223)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~ 143 (223)
+.|.|.|||+-..+.+-+-..-.|++++|+.++++..-.+..+.+-.+.... -..++++=||+|+..... .+.+++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence 7788999998665544444445799999999999654444444333444332 257888899999954322 234666
Q ss_pred HHHHHH---hCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 144 EKYAQS---VGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 144 ~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
++|.+. -+.|++.+||..+.|++-+++.|.+.+...
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 666653 356899999999999999998887766443
No 319
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.1e-09 Score=85.28 Aligned_cols=167 Identities=14% Similarity=0.147 Sum_probs=103.2
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhh---CC-------------CCCCCccccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVE---DK-------------FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
....+.+||..||+..-|||||..+++. .. .+++ ...|.++....+.++-.+-.+...|+||
T Consensus 7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeE--k~rGITIntahveyet~~rhyahVDcPG 84 (394)
T COG0050 7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEE--KARGITINTAHVEYETANRHYAHVDCPG 84 (394)
T ss_pred cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchH--hhcCceeccceeEEecCCceEEeccCCC
Confidence 3457899999999999999999988752 11 1112 2234444445555544444566679999
Q ss_pred ccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccccC---CHHHHHHHHHH
Q psy8722 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRTV---MQEDAEKYAQS 149 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~ 149 (223)
|.+|-...-.-..+.|++|+|+++.+....+. ++.+...++ -++| +++++||+|+.+..+. -..++.++..+
T Consensus 85 HaDYvKNMItgAaqmDgAILVVsA~dGpmPqT-rEHiLlarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~ 160 (394)
T COG0050 85 HADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred hHHHHHHHhhhHHhcCccEEEEEcCCCCCCcc-hhhhhhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence 99887666555678899999999998432211 111112222 2565 5667899999764332 23567788888
Q ss_pred hCC-----cEEEecCCCC-CCHHHHHHHHHHHHHHHHHHH
Q psy8722 150 VGA-----VHFHTSAKMN-RGIEEMFLELSQRMLEKAQEF 183 (223)
Q Consensus 150 ~~~-----~~~~~Sa~~~-~~i~~~~~~i~~~~~~~~~~~ 183 (223)
+++ |++..|+..- +|-.. +..-+..++.....+
T Consensus 161 y~f~gd~~Pii~gSal~ale~~~~-~~~~i~eLm~avd~y 199 (394)
T COG0050 161 YGFPGDDTPIIRGSALKALEGDAK-WEAKIEELMDAVDSY 199 (394)
T ss_pred cCCCCCCcceeechhhhhhcCCcc-hHHHHHHHHHHHHhc
Confidence 886 4666665532 33222 444455555554444
No 320
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=3.2e-09 Score=87.01 Aligned_cols=155 Identities=19% Similarity=0.101 Sum_probs=107.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC---CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKF---NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
.|...|+---|||||+..+.+... ++....+++.+.........+. .+.|+|.||++++-...-..+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~--~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG--VMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC--ceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 578889999999999999984433 4455567777776666666554 67777999999887776667778999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHH---hCCcEEEecCCCCCCHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS---VGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
|++.++.-..+..+. +..+.. .+ -...++++||.|..+... ..+..+++... -..+++.+|+++|+|++++.+
T Consensus 80 vV~~deGl~~qtgEh-L~iLdl-lg-i~~giivltk~D~~d~~r-~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 80 VVAADEGLMAQTGEH-LLILDL-LG-IKNGIIVLTKADRVDEAR-IEQKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred EEeCccCcchhhHHH-HHHHHh-cC-CCceEEEEeccccccHHH-HHHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 999976433322221 122222 21 234589999999865432 12333333333 235789999999999999999
Q ss_pred HHHHHHH
Q psy8722 171 ELSQRML 177 (223)
Q Consensus 171 ~i~~~~~ 177 (223)
.|.+..-
T Consensus 156 ~l~~L~~ 162 (447)
T COG3276 156 ELIDLLE 162 (447)
T ss_pred HHHHhhh
Confidence 9998874
No 321
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.98 E-value=3.3e-09 Score=82.22 Aligned_cols=68 Identities=16% Similarity=0.084 Sum_probs=42.0
Q ss_pred EEEEEEeCCCcccc-------------cccccccccc-CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeC
Q psy8722 64 LNLAIWDTAGQERF-------------HALGPIYYRM-SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNK 129 (223)
Q Consensus 64 ~~~~i~D~~G~~~~-------------~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 129 (223)
..+.++|+||-... ..+...|+++ .+++++|+|+...-.-.....+...+. ..+.++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 46888999995321 1234556664 468999998865322222222222232 346899999999
Q ss_pred CCccc
Q psy8722 130 IDLEK 134 (223)
Q Consensus 130 ~Dl~~ 134 (223)
.|...
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99754
No 322
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=4.8e-08 Score=79.01 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=56.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEE------------C--C--eEEEEEEEeCCCccc--
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNI------------A--G--KRLNLAIWDTAGQER-- 76 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~--~--~~~~~~i~D~~G~~~-- 76 (223)
.+++.++|-||+|||||+|.++.........|..+.+-......+ . . ....+.|+|++|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999966655444555544432222221 1 1 224688999999432
Q ss_pred --cccccccc---cccCCEEEEEEECCC
Q psy8722 77 --FHALGPIY---YRMSNGAVLVYDITD 99 (223)
Q Consensus 77 --~~~~~~~~---~~~~d~~i~v~d~~~ 99 (223)
-..+...| ++.+|+++.|++..+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 23333333 578999999999764
No 323
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.93 E-value=1.8e-08 Score=84.23 Aligned_cols=113 Identities=13% Similarity=0.163 Sum_probs=76.3
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCH-------HHHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCc
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDE-------DSFEKVKNWVKELKKMLG----NDICLTIAGNKIDL 132 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl 132 (223)
..+.++|++|+...+..|..++.+++++|||+++++- .....+..-+..+...+. .+.|++|++||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 5678899999998899999999999999999998752 122334444444444332 46899999999996
Q ss_pred ------ccc----------c--cCCHHHHHHHHHHh------------CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 133 ------EKQ----------R--TVMQEDAEKYAQSV------------GAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 133 ------~~~----------~--~~~~~~~~~~~~~~------------~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
... . .-..+.+..+.... .+.++.++|.+..++..+|+.+.+.+
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 111 1 12344554444321 12356789998899999998887643
No 324
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.90 E-value=1.5e-08 Score=81.38 Aligned_cols=138 Identities=20% Similarity=0.245 Sum_probs=79.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCC----------CccccceeEEEEEEEECCeEEEEEEEeCCCccccc---cc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEK----------HITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH---AL 80 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---~~ 80 (223)
-.++|+++|+.|.|||||+|.|.+...... ..++.........+.-++..+.+.++||||-.++- ..
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 478999999999999999999986533222 12333344444444456777889999999922211 11
Q ss_pred c-----------cccc--------------ccCCEEEEEEECCCHHHHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 81 G-----------PIYY--------------RMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 81 ~-----------~~~~--------------~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
| ..|+ ..+|+++|.+..+... ...+ ...+..+.. .+.+|-|+-|.|.-.
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls~----~vNlIPVI~KaD~lT 176 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLSK----RVNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHhc----ccCeeeeeeccccCC
Confidence 1 1111 2368999999876532 1111 123333333 467788889999621
Q ss_pred c--ccCCHHHHHHHHHHhCCcEEE
Q psy8722 135 Q--RTVMQEDAEKYAQSVGAVHFH 156 (223)
Q Consensus 135 ~--~~~~~~~~~~~~~~~~~~~~~ 156 (223)
. .....+.+.+....+++++|.
T Consensus 177 ~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 177 DDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHHHHHHHHHHHhCCceeC
Confidence 1 111223344444555555553
No 325
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.88 E-value=3.7e-08 Score=77.25 Aligned_cols=106 Identities=18% Similarity=0.135 Sum_probs=67.2
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHH
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDA 143 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 143 (223)
+.++|++|.|--+.+.. ....+|.+++|.-..-.+..+.++.-+-++ -=++|+||.|.........+..
T Consensus 144 ~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--------aDi~vINKaD~~~A~~a~r~l~ 212 (323)
T COG1703 144 YDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEI--------ADIIVINKADRKGAEKAARELR 212 (323)
T ss_pred CCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhh--------hheeeEeccChhhHHHHHHHHH
Confidence 66788899884433222 335689999988777666666665433332 3378899999644322111111
Q ss_pred HHH--H------HHhCCcEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 144 EKY--A------QSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 144 ~~~--~------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
..+ . ..|..+++.+||.+|+|++++|+.|.+......
T Consensus 213 ~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~ 257 (323)
T COG1703 213 SALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLT 257 (323)
T ss_pred HHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHH
Confidence 111 1 123357899999999999999999988764433
No 326
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.88 E-value=2e-09 Score=83.01 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=86.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-----------CCCCccc---------------cceeEEEEEEEEC------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-----------NEKHITT---------------LQASFLNKKLNIA------ 60 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-----------~~~~~~~---------------~~~~~~~~~~~~~------ 60 (223)
.+.+.|.|-|+||+|||||++.|...-. +++...+ .....+.+.+-..
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 3578999999999999999999752110 1110000 0112233333221
Q ss_pred ------------CeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy8722 61 ------------GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGN 128 (223)
Q Consensus 61 ------------~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~n 128 (223)
-..+.++|++|.|--+.+. ....-+|.+++|.-..-.+..+.++.-+-++ .=++|+|
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVN 175 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEe
Confidence 1126677888887332221 2335699999999877665555444322222 3478899
Q ss_pred CCCccccccCCHHHHHHHHHH-------hCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 129 KIDLEKQRTVMQEDAEKYAQS-------VGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 129 K~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
|.|....... ..+.+..... +..|++.+||.++.|++++++.|.+.....
T Consensus 176 KaD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 176 KADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp --SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 9997554332 2333333322 234799999999999999999888754333
No 327
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.87 E-value=1.5e-08 Score=80.20 Aligned_cols=55 Identities=20% Similarity=0.118 Sum_probs=38.8
Q ss_pred CeEEEEEeCCCccccccCCHHHHHHHHHHh--CCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 121 ICLTIAGNKIDLEKQRTVMQEDAEKYAQSV--GAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 121 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
.+-++|+||+|+........+...+..... ..+++.+|+++|+|++++.+||.++
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 466899999998543221233333333333 4689999999999999999998763
No 328
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.81 E-value=2.1e-08 Score=75.52 Aligned_cols=93 Identities=23% Similarity=0.227 Sum_probs=65.0
Q ss_pred cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHH-----HHhC
Q psy8722 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYA-----QSVG 151 (223)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~ 151 (223)
+...+..+++.+|++++|+|+.++.. .|...+... ..+.|+++|+||+|+..... ..+....+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence 46677888999999999999987541 122233222 23579999999999854322 233333333 2333
Q ss_pred C---cEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 152 A---VHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 152 ~---~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
. .++.+||+++.|++++++.|.+.+
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3 589999999999999999998876
No 329
>PRK12289 GTPase RsgA; Reviewed
Probab=98.81 E-value=2.5e-08 Score=81.76 Aligned_cols=92 Identities=15% Similarity=0.215 Sum_probs=68.2
Q ss_pred cccccccccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEe
Q psy8722 79 ALGPIYYRMSNGAVLVYDITDED-SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHT 157 (223)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (223)
.+....+.++|.+++|+|+.++. ....+..|+..+.. .++|+++|+||+|+..... .+...+....++++++.+
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFI 155 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence 33445678999999999999875 44566777776643 3689999999999853321 122333445678899999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q psy8722 158 SAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 158 Sa~~~~~i~~~~~~i~~~ 175 (223)
||.++.|++++++.+...
T Consensus 156 SA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 156 SVETGIGLEALLEQLRNK 173 (352)
T ss_pred EcCCCCCHHHHhhhhccc
Confidence 999999999999888654
No 330
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.81 E-value=2.1e-08 Score=80.33 Aligned_cols=89 Identities=18% Similarity=0.137 Sum_probs=69.0
Q ss_pred cccccccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecC
Q psy8722 81 GPIYYRMSNGAVLVYDITDED-SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
.+..+.++|.+++|+|+.++. ++..+.+|+..+... ++|+++|+||+|+..... ...........+.+++.+|+
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA 146 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSA 146 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEEC
Confidence 344578999999999999987 888888888877653 689999999999854321 12223334557889999999
Q ss_pred CCCCCHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQ 174 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~ 174 (223)
+++.|+++++..+..
T Consensus 147 ~~g~gi~~L~~~L~~ 161 (287)
T cd01854 147 KTGEGLDELREYLKG 161 (287)
T ss_pred CCCccHHHHHhhhcc
Confidence 999999999887764
No 331
>KOG1547|consensus
Probab=98.80 E-value=7.5e-08 Score=73.13 Aligned_cols=144 Identities=15% Similarity=0.225 Sum_probs=82.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCC---------CCccccceeEEEEEEEECCeEEEEEEEeCCCccc---ccccc-
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNE---------KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER---FHALG- 81 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---~~~~~- 81 (223)
+|||.|+|.+|.|||||+|.+....... ....|+........+.-++...++.++||||-.+ ....|
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 6899999999999999999986322211 1122344444444555577778899999999221 11111
Q ss_pred ----------cccc--------------ccCCEEEEEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcc--c
Q psy8722 82 ----------PIYY--------------RMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLE--K 134 (223)
Q Consensus 82 ----------~~~~--------------~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~--~ 134 (223)
..|+ ..+|+++|.+..+.- +...+. .++..+.. -+.++-|+-|.|-- +
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~----vvNvvPVIakaDtlTle 200 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE----VVNVVPVIAKADTLTLE 200 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh----hheeeeeEeecccccHH
Confidence 1111 235788888877653 222221 23333333 25677778898831 1
Q ss_pred cccCCHHHHHHHHHHhCCcEEEecCCCCC
Q psy8722 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNR 163 (223)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (223)
++....+.+.+-...+++.+|.--+.+-+
T Consensus 201 Er~~FkqrI~~el~~~~i~vYPq~~fded 229 (336)
T KOG1547|consen 201 ERSAFKQRIRKELEKHGIDVYPQDSFDED 229 (336)
T ss_pred HHHHHHHHHHHHHHhcCcccccccccccc
Confidence 22223344555556677777765554433
No 332
>KOG2655|consensus
Probab=98.79 E-value=1.2e-07 Score=76.71 Aligned_cols=142 Identities=15% Similarity=0.210 Sum_probs=83.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCC-------Ccc--ccceeEEEEEEEECCeEEEEEEEeCCCccccc-------
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEK-------HIT--TLQASFLNKKLNIAGKRLNLAIWDTAGQERFH------- 78 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------- 78 (223)
.|++.++|++|.|||||||.|....+... ..+ +.........+.-+|..+++.++||||-.+..
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 48999999999999999999886544322 111 33333333334446777889999999922110
Q ss_pred ------------------cccccccc--cCCEEEEEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 79 ------------------ALGPIYYR--MSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 79 ------------------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
...+..+. .+|+++|.+...... ...+. ..+..+. ..+.+|-|+-|.|.-...+
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKLS----KKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHHh----ccccccceeeccccCCHHH
Confidence 00111112 478999999876531 11111 2223333 3577888889999632221
Q ss_pred --CCHHHHHHHHHHhCCcEEEecCCC
Q psy8722 138 --VMQEDAEKYAQSVGAVHFHTSAKM 161 (223)
Q Consensus 138 --~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (223)
.....+.+-+...++++|.-....
T Consensus 176 l~~~K~~I~~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 176 LNQFKKRIRQDIEEHNIKVFDFPTDE 201 (366)
T ss_pred HHHHHHHHHHHHHHcCcceecCCCCc
Confidence 122445555666777777655443
No 333
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.75 E-value=1.7e-08 Score=73.54 Aligned_cols=94 Identities=19% Similarity=0.081 Sum_probs=63.0
Q ss_pred ccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEe
Q psy8722 78 HALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHT 157 (223)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (223)
..+.....+++|++++|+|+.++..... ..+...+. ..+.|+++|+||+|+..... .+....+....+.+++.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~i 76 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVYV 76 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEEE
Confidence 3445667788999999999987643222 11222222 23589999999999843211 112223334456789999
Q ss_pred cCCCCCCHHHHHHHHHHHHH
Q psy8722 158 SAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 158 Sa~~~~~i~~~~~~i~~~~~ 177 (223)
||+++.|++++++.+.+.+.
T Consensus 77 Sa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 77 SAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EccccccHHHHHHHHHHHHh
Confidence 99999999999999887664
No 334
>PRK00098 GTPase RsgA; Reviewed
Probab=98.74 E-value=4e-08 Score=79.16 Aligned_cols=87 Identities=23% Similarity=0.216 Sum_probs=65.3
Q ss_pred ccccCCEEEEEEECCCHHHHHH-HHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCC
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEK-VKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMN 162 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (223)
...++|.+++|+|+.++.+... +..|+..+.. .++|+++|+||+|+..... ..+...+.....+.+++.+||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4589999999999988765444 5677776654 3689999999999853222 123344555667889999999999
Q ss_pred CCHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQ 174 (223)
Q Consensus 163 ~~i~~~~~~i~~ 174 (223)
.|++++++.+..
T Consensus 153 ~gi~~L~~~l~g 164 (298)
T PRK00098 153 EGLDELKPLLAG 164 (298)
T ss_pred ccHHHHHhhccC
Confidence 999999887643
No 335
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.73 E-value=3.3e-08 Score=70.88 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=37.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (223)
+++++|.+|+|||||+|++.+.... ....+..+.+ ...+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKH--FQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccc--eEEEEeCC---CEEEEECCCc
Confidence 8999999999999999999966553 2222333333 33344443 4689999994
No 336
>PRK12288 GTPase RsgA; Reviewed
Probab=98.71 E-value=9.8e-08 Score=78.19 Aligned_cols=88 Identities=20% Similarity=0.218 Sum_probs=67.7
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc-CCHHHHHHHHHHhCCcEEEecCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT-VMQEDAEKYAQSVGAVHFHTSAKMNR 163 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (223)
..|+|.+++|++.....++..+..|+..+.. .++|.++|+||+|+..... ...+...+.....+.+++.+||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999888899999999876653 3689999999999954321 11122333445678899999999999
Q ss_pred CHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQR 175 (223)
Q Consensus 164 ~i~~~~~~i~~~ 175 (223)
|++++++.|...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999888653
No 337
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.66 E-value=5.4e-08 Score=72.02 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=39.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
...++++++|.+|+|||||+|++.+... .....++++..... +.++. .+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~--~~~~~---~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQE--VHLDK---KVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEE--EEeCC---CEEEEECcC
Confidence 3458999999999999999999996443 44445555544333 23322 467889998
No 338
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.62 E-value=1.3e-07 Score=68.94 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=36.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
..++|+++|.+|+|||||+|+|.+... .....++.+... ..+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVW--QYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeE--EEEEcCC---CEEEEECcC
Confidence 468899999999999999999985443 333334433332 2223322 256779998
No 339
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.61 E-value=6.5e-07 Score=84.29 Aligned_cols=112 Identities=21% Similarity=0.231 Sum_probs=70.2
Q ss_pred EEEECCCCCcHHHHHHHHhhCCCCCCC------ccccceeEEEEEEEECCeEEEEEEEeCCCcc--------cccccccc
Q psy8722 18 VVLLGEGCVGKTSVVLRYVEDKFNEKH------ITTLQASFLNKKLNIAGKRLNLAIWDTAGQE--------RFHALGPI 83 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~ 83 (223)
.+|||++|+||||+|+.- +-.++-.. ..+.+.+. ...+++.+ ...++||+|.. .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 579999999999999876 22332211 11122222 12333333 34588999922 11122333
Q ss_pred cc---------ccCCEEEEEEECCCH---------HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 84 YY---------RMSNGAVLVYDITDE---------DSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 84 ~~---------~~~d~~i~v~d~~~~---------~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
++ +..|++|+++|+.+- ..-..++..+.++....+-..||+|++||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 32 457999999998662 1123456677888888888899999999999743
No 340
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.59 E-value=4.4e-07 Score=73.44 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=94.6
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCcc--------------ccceeEEEEEEEEC---------------
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHIT--------------TLQASFLNKKLNIA--------------- 60 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~--------------- 60 (223)
...+.++.+.+.|+...|||||+-.|..+......-. +.+.+.....+-++
T Consensus 112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 3457899999999999999999988875444332211 11111111111111
Q ss_pred ------CeEEEEEEEeCCCcccccccc--ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCc
Q psy8722 61 ------GKRLNLAIWDTAGQERFHALG--PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132 (223)
Q Consensus 61 ------~~~~~~~i~D~~G~~~~~~~~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (223)
...-.+.|.||.||+.|.+.. ..+-.+.|..++++.+++.-+- +.+ ..+--......|+++++||+|+
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~--~tk--EHLgi~~a~~lPviVvvTK~D~ 267 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK--MTK--EHLGIALAMELPVIVVVTKIDM 267 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch--hhh--HhhhhhhhhcCCEEEEEEeccc
Confidence 111346788999999886543 4455778999999999985432 111 1111112236899999999998
Q ss_pred cccccC--CHHHHHHHHH----------------------HhC---CcEEEecCCCCCCHHHHHHH
Q psy8722 133 EKQRTV--MQEDAEKYAQ----------------------SVG---AVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 133 ~~~~~~--~~~~~~~~~~----------------------~~~---~~~~~~Sa~~~~~i~~~~~~ 171 (223)
...... ..+++..+.+ +.+ +|++.+|+.+|+|++-+.+.
T Consensus 268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~ 333 (527)
T COG5258 268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF 333 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH
Confidence 432111 1122222221 111 37899999999998755433
No 341
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.58 E-value=1.9e-07 Score=77.15 Aligned_cols=95 Identities=28% Similarity=0.339 Sum_probs=69.6
Q ss_pred ccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHH----HHHHH
Q psy8722 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAE----KYAQS 149 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~ 149 (223)
.+.|..+...+++.++++++|+|+.+.. ..|...+.+... +.|+++|+||+|+... ....+... +++..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 4567777888889999999999997643 235555555543 5799999999998542 22333333 34666
Q ss_pred hCC---cEEEecCCCCCCHHHHHHHHHHH
Q psy8722 150 VGA---VHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 150 ~~~---~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
.++ .++.+||+++.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 776 48999999999999999988653
No 342
>KOG0460|consensus
Probab=98.58 E-value=2.9e-07 Score=73.30 Aligned_cols=148 Identities=17% Similarity=0.128 Sum_probs=92.0
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhC---CC-------------CCCCccccceeEEEEEEEECCeEEEEEEEeCCCc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVED---KF-------------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (223)
...+.+||.-||+..-|||||-.+++.. .- +++ ..-|.++....+.++-..-...=.|+|||
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEE--kaRGITIn~aHveYeTa~RhYaH~DCPGH 127 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEE--KARGITINAAHVEYETAKRHYAHTDCPGH 127 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhh--hhccceEeeeeeeeeccccccccCCCCch
Confidence 3578999999999999999998876421 11 111 22344444444444333333445599999
Q ss_pred cccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc-C--CHHHHHHHHHHhC
Q psy8722 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT-V--MQEDAEKYAQSVG 151 (223)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~--~~~~~~~~~~~~~ 151 (223)
.+|-...-.-..+.|++|+|+.+.|.... +.++.+...++. + -..+++++||.|+.++.+ + -.-++.++...+|
T Consensus 128 ADYIKNMItGaaqMDGaILVVaatDG~MP-QTrEHlLLArQV-G-V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~g 204 (449)
T KOG0460|consen 128 ADYIKNMITGAAQMDGAILVVAATDGPMP-QTREHLLLARQV-G-VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFG 204 (449)
T ss_pred HHHHHHhhcCccccCceEEEEEcCCCCCc-chHHHHHHHHHc-C-CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcC
Confidence 98866665555778999999999995322 222222233332 1 135778899999863322 1 2345677788887
Q ss_pred C-----cEEEec---CCCCC
Q psy8722 152 A-----VHFHTS---AKMNR 163 (223)
Q Consensus 152 ~-----~~~~~S---a~~~~ 163 (223)
+ |++.-| |..+.
T Consensus 205 f~Gd~~PvI~GSAL~ALeg~ 224 (449)
T KOG0460|consen 205 FDGDNTPVIRGSALCALEGR 224 (449)
T ss_pred CCCCCCCeeecchhhhhcCC
Confidence 5 677755 44553
No 343
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.56 E-value=2.1e-07 Score=68.88 Aligned_cols=57 Identities=18% Similarity=0.268 Sum_probs=38.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (223)
...++++++|.+|+|||||+|++.+..+. ....++++.. ...+.++ ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~--~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKG--IQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEee--eEEEEec---CCEEEEECCCC
Confidence 45689999999999999999999976553 2223333333 3333333 24678999994
No 344
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.55 E-value=2.8e-07 Score=67.09 Aligned_cols=57 Identities=19% Similarity=0.160 Sum_probs=38.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
....+++++|.+|+|||||+|++.+... ....++.+.+.....+..++ .+.+|||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 3467899999999999999999985442 22233444333333333333 588999998
No 345
>KOG2486|consensus
Probab=98.54 E-value=1.7e-07 Score=72.68 Aligned_cols=154 Identities=15% Similarity=0.122 Sum_probs=87.8
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCC-CCccccceeEEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNE-KHITTLQASFLNKKLNIAGKRLNLAIWDTAG----------QERFHAL 80 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~ 80 (223)
.....+++++|.+|+|||+|||.++...... ...+..+.......+.++. .+.+.|.|| ...+...
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence 3567899999999999999999998433322 2222333333333333333 456679999 1233444
Q ss_pred cccccccCC---EEEEEEECCCHHHHHH--HHHHHHHHHHHcCCCCeEEEEEeCCCcccc------ccC-----CHHHHH
Q psy8722 81 GPIYYRMSN---GAVLVYDITDEDSFEK--VKNWVKELKKMLGNDICLTIAGNKIDLEKQ------RTV-----MQEDAE 144 (223)
Q Consensus 81 ~~~~~~~~d---~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------~~~-----~~~~~~ 144 (223)
...|+.+-+ -+.+.+|++-+-.-.+ ...|+. ..++|+.+|.||+|.... ++. ..+...
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~g------e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLG------ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHh------hcCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 455543322 3344555554321111 112322 247999999999996321 111 112222
Q ss_pred HHHHHhCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 145 KYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 145 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
+.+-....+++.+|+.++.|++.++-.|.+
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhh
Confidence 222333457788999999999988766654
No 346
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.54 E-value=1.3e-07 Score=71.17 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=36.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCC---------CCCCccccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKF---------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
..+++++|.+|+|||||+|+|..... ..+..++++.+ ...+.++. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLD--LIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeee--eEEEecCC---CCEEEeCcC
Confidence 46899999999999999999985432 22333443333 33333332 367889999
No 347
>KOG0467|consensus
Probab=98.52 E-value=3e-07 Score=79.89 Aligned_cols=118 Identities=18% Similarity=0.169 Sum_probs=81.4
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHh-hCCCCCC-------------CccccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYV-EDKFNEK-------------HITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~-~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
.+++.--+|+++-+..-|||||...|+ .+..... ...+.|.+....-+..-.+.+.+.++|+|||.
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 345667799999999999999999987 2222111 12233333333344443345778888999999
Q ss_pred ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q psy8722 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKID 131 (223)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (223)
+|.+......+-+|++++.+|+.+.-..+...-+.+.+. .+...++|+||+|
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~----~~~~~~lvinkid 135 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI----EGLKPILVINKID 135 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH----ccCceEEEEehhh
Confidence 999999999999999999999988543332222222222 3567789999999
No 348
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.49 E-value=4.2e-07 Score=72.92 Aligned_cols=58 Identities=17% Similarity=0.316 Sum_probs=41.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
...++|+++|.+|+|||||+|+|.+... .....++++... ..+..+. .+.++||||-.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC---cEEEEECCCcC
Confidence 4568999999999999999999996554 444455555444 3333333 36789999953
No 349
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.49 E-value=6.2e-07 Score=73.51 Aligned_cols=83 Identities=14% Similarity=-0.033 Sum_probs=56.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCe---------------EEEEEEEeCCCccccc-
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGK---------------RLNLAIWDTAGQERFH- 78 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~- 78 (223)
+++.++|.|++|||||++.+++... .....+..+.+.....+.+.+. ...+.+.|+||...-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999997666 4444455444444444444332 1357788999954321
Q ss_pred ---ccc---ccccccCCEEEEEEECC
Q psy8722 79 ---ALG---PIYYRMSNGAVLVYDIT 98 (223)
Q Consensus 79 ---~~~---~~~~~~~d~~i~v~d~~ 98 (223)
.+. -..++++|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 111 22468899999999985
No 350
>KOG1954|consensus
Probab=98.47 E-value=1.3e-06 Score=70.41 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=74.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCc-cccceeEEEEEEEE--------------------------------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHI-TTLQASFLNKKLNI-------------------------------- 59 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-------------------------------- 59 (223)
...-=|+++|.-..||||+|+.|+...++.... +..+.++....+.-
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 444568999999999999999999888864332 11222222221110
Q ss_pred ------CC-eEEEEEEEeCCCcc-----------ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCC
Q psy8722 60 ------AG-KRLNLAIWDTAGQE-----------RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDI 121 (223)
Q Consensus 60 ------~~-~~~~~~i~D~~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 121 (223)
.+ ..-.+.|+||||.- .|....+=+...+|.+|++||...-+--+..... +....+..-
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~v---i~aLkG~Ed 212 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRV---IDALKGHED 212 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHH---HHHhhCCcc
Confidence 01 11247788999922 1223334456789999999998664433334433 333444456
Q ss_pred eEEEEEeCCCccccc
Q psy8722 122 CLTIAGNKIDLEKQR 136 (223)
Q Consensus 122 p~ivv~nK~Dl~~~~ 136 (223)
.+-||+||.|..+..
T Consensus 213 kiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 213 KIRVVLNKADQVDTQ 227 (532)
T ss_pred eeEEEeccccccCHH
Confidence 788999999975543
No 351
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.47 E-value=5.2e-07 Score=71.97 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=40.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (223)
...++++++|.+|+|||||+|+|.+... .....++++... ..+.+.. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC---CEEEEECCCc
Confidence 4568999999999999999999996543 334444444433 3344433 3678999995
No 352
>KOG1143|consensus
Probab=98.45 E-value=8.3e-07 Score=71.66 Aligned_cols=151 Identities=18% Similarity=0.188 Sum_probs=91.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCcc-----------------------ccceeEEEEEEEE----------C
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHIT-----------------------TLQASFLNKKLNI----------A 60 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~~----------~ 60 (223)
-+++++++|.-.+|||||+-.|+.+..+...-. ..|++-....+.+ +
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 367999999999999999987765554432200 1122211111111 1
Q ss_pred CeEEEEEEEeCCCccccccccccccc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc-
Q psy8722 61 GKRLNLAIWDTAGQERFHALGPIYYR--MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT- 137 (223)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~- 137 (223)
...--+.++|.+|+.+|.......+. -.|.+++|++++....+.. ++.+..+.. -++|++++++|+|+.+...
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A---L~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA---LNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH---hCCCeEEEEEeeccccchhH
Confidence 22235778899999988766544332 3688999999887654432 222333333 3799999999999854311
Q ss_pred -----------------------CCHHHHHHHHHHh----CCcEEEecCCCCCCHHHH
Q psy8722 138 -----------------------VMQEDAEKYAQSV----GAVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 138 -----------------------~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~~ 168 (223)
-..+++...+++. -.|+|-+|+..|+|++-+
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 1122222222222 247899999999997643
No 353
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.44 E-value=4.6e-07 Score=73.70 Aligned_cols=57 Identities=18% Similarity=0.249 Sum_probs=41.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (223)
...+++.|+|.||+|||||||+|.+... ..+..| |.+.....+.++.. +.++||||-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCCC---eEEecCCCc
Confidence 4568899999999999999999996555 344444 44444455555543 778899993
No 354
>KOG0448|consensus
Probab=98.44 E-value=4.7e-06 Score=72.00 Aligned_cols=144 Identities=20% Similarity=0.230 Sum_probs=83.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCc-ccc-------------------------------------------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHI-TTL------------------------------------------- 48 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~-~~~------------------------------------------- 48 (223)
....||++.|..++||||++|+++....-++.. +++
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 346799999999999999999988555433321 111
Q ss_pred ceeEEEEEEEECCeE----EEEEEEeCCCcc---ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCC
Q psy8722 49 QASFLNKKLNIAGKR----LNLAIWDTAGQE---RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDI 121 (223)
Q Consensus 49 ~~~~~~~~~~~~~~~----~~~~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 121 (223)
+.....+.++-++.. -.+.+.|.||.+ ....-...+..++|++|+|.++.+.-+...- .+ +......+.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~F---f~~vs~~Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QF---FHKVSEEKP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HH---HHHhhccCC
Confidence 000011111111100 146677899844 2333345667889999999999876544332 22 232222344
Q ss_pred eEEEEEeCCCccccccCCHHHHHHHHHHhCC--------cEEEecCC
Q psy8722 122 CLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA--------VHFHTSAK 160 (223)
Q Consensus 122 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~ 160 (223)
.+.++.||+|.....+...+++.....++.. .+|.+|++
T Consensus 263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 5677778999866554444555544333332 36677743
No 355
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.42 E-value=6.7e-07 Score=65.10 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=38.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCC-CCCCCccccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDK-FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
....+|+++|.+|+|||||+|.+.+.. ...+..+.++...... ... ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~--~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEV--KLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEE--Eec---CCEEEEECCC
Confidence 456889999999999999999999544 3334344444444332 222 2467889998
No 356
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.41 E-value=2.2e-06 Score=62.41 Aligned_cols=86 Identities=17% Similarity=0.122 Sum_probs=56.0
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHH
Q psy8722 89 NGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (223)
|.+++|+|+.++.+... .++.. ......++|+++|+||+|+.....+ .+....+....+..++.+||.++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 68999999988755432 22221 1222346899999999998432211 11122233334556889999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 169 FLELSQRMLE 178 (223)
Q Consensus 169 ~~~i~~~~~~ 178 (223)
++.+.+.+.+
T Consensus 77 ~~~i~~~~~~ 86 (155)
T cd01849 77 ESAFTKQTNS 86 (155)
T ss_pred HHHHHHHhHH
Confidence 9998877543
No 357
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.40 E-value=4.8e-06 Score=64.34 Aligned_cols=89 Identities=13% Similarity=0.029 Sum_probs=52.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC--CCCCCCc-cccceeEEEEEEEEC-CeEEEEEEEeCCCccccccc------cc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED--KFNEKHI-TTLQASFLNKKLNIA-GKRLNLAIWDTAGQERFHAL------GP 82 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~------~~ 82 (223)
.+-.-|+|+|++++|||+|+|.|.+. .+..... ...+..+........ +....+.++||+|....... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 45567899999999999999999977 6653322 112222222222121 23467889999995533221 11
Q ss_pred ccccc--CCEEEEEEECCCHH
Q psy8722 83 IYYRM--SNGAVLVYDITDED 101 (223)
Q Consensus 83 ~~~~~--~d~~i~v~d~~~~~ 101 (223)
..+.. ++.+|+..+.....
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 12223 78888877766543
No 358
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.38 E-value=1.4e-06 Score=63.62 Aligned_cols=88 Identities=20% Similarity=0.157 Sum_probs=56.0
Q ss_pred ccccCCEEEEEEECCCHHH--HHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC
Q psy8722 84 YYRMSNGAVLVYDITDEDS--FEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM 161 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (223)
.+.++|.+++|+|+.++.. ...+.+++ .. ...+.|+++|+||+|+..... .......+.+.+....+.+||+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l---~~-~~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYL---KK-EKPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHH---Hh-ccCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeeccc
Confidence 4578999999999998632 22333333 22 233589999999999843221 11122222222223347799999
Q ss_pred CCCHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRM 176 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~ 176 (223)
+.|++++++.+.+.+
T Consensus 80 ~~~~~~L~~~l~~~~ 94 (157)
T cd01858 80 PFGKGSLIQLLRQFS 94 (157)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999998886643
No 359
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=3.2e-06 Score=71.77 Aligned_cols=138 Identities=16% Similarity=0.172 Sum_probs=80.7
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+.++.+-++|+||+|+||||||+.|+..-... |+.....+.++ +.+..-.+.+.++|.. .+.+. ...+-+|.
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~----ti~~i~GPiTv-vsgK~RRiTflEcp~D--l~~mi-DvaKIaDL 136 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ----TIDEIRGPITV-VSGKTRRITFLECPSD--LHQMI-DVAKIADL 136 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHHh----hhhccCCceEE-eecceeEEEEEeChHH--HHHHH-hHHHhhhe
Confidence 34678899999999999999999987322211 11110111111 3455567788899842 22222 23466899
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccccCCHHHHHH-----HHHH--hCCcEEEecCCC
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRTVMQEDAEK-----YAQS--VGAVHFHTSAKM 161 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~--~~~~~~~~Sa~~ 161 (223)
+++.+|.+-.--.+.+ .+++.+..+ ++| ++-|+|..|+-.... ....++. |..+ .|+++|.+|-..
T Consensus 137 VlLlIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlfk~~s-tLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 137 VLLLIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLFKNPS-TLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred eEEEeccccCceehHH-HHHHHHhhc---CCCceEEEEeecccccChH-HHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 9999998865433333 244455444 455 677889999843321 1222222 2222 257788887653
No 360
>KOG0464|consensus
Probab=98.36 E-value=3.8e-07 Score=74.52 Aligned_cols=134 Identities=17% Similarity=0.171 Sum_probs=90.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCC--C------CCCC--------ccccceeEEEEEEEECCeEEEEEEEeCCCcccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDK--F------NEKH--------ITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF 77 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~--~------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 77 (223)
+--+|.++.+-.+||||.-.+++.-. . .... ....|.++...-+.++.+...+.++||||+.+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 34589999999999999999976211 1 1110 111234444444555555577888899999999
Q ss_pred ccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCc
Q psy8722 78 HALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV 153 (223)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (223)
.-..+.+++-.|+++.|||.+-.-..+.+.-|.+. -..++|.+.++||+|..... ....+....+++++.
T Consensus 116 ~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~an--fe~avdsi~ekl~ak 185 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLAAN--FENAVDSIEEKLGAK 185 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhhhh--hhhHHHHHHHHhCCc
Confidence 99999999999999999999876554555555543 34578999999999974332 122333444555553
No 361
>KOG0447|consensus
Probab=98.36 E-value=1.7e-05 Score=67.23 Aligned_cols=90 Identities=16% Similarity=0.231 Sum_probs=58.7
Q ss_pred EECCeEE-EEEEEeCCCc-------------cccccccccccccCCEEEEEEECCCHHHHHHHHHHH-HHHHHHcCCCCe
Q psy8722 58 NIAGKRL-NLAIWDTAGQ-------------ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWV-KELKKMLGNDIC 122 (223)
Q Consensus 58 ~~~~~~~-~~~i~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p 122 (223)
.+.|... ...+.|.||- +....+...+..+.+++|+|+---.- +.-..-. ..+...-+.+..
T Consensus 405 tVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV---DAERSnVTDLVsq~DP~GrR 481 (980)
T KOG0447|consen 405 NVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV---DAERSIVTDLVSQMDPHGRR 481 (980)
T ss_pred eecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc---chhhhhHHHHHHhcCCCCCe
Confidence 3444444 5778899992 12345567788999999999853222 2222211 233444456788
Q ss_pred EEEEEeCCCccccccCCHHHHHHHHHHh
Q psy8722 123 LTIAGNKIDLEKQRTVMQEDAEKYAQSV 150 (223)
Q Consensus 123 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 150 (223)
.|+|+||.|+.+.+...++.++++....
T Consensus 482 TIfVLTKVDlAEknlA~PdRI~kIleGK 509 (980)
T KOG0447|consen 482 TIFVLTKVDLAEKNVASPSRIQQIIEGK 509 (980)
T ss_pred eEEEEeecchhhhccCCHHHHHHHHhcC
Confidence 9999999999887777778787776543
No 362
>KOG0099|consensus
Probab=98.35 E-value=3.6e-06 Score=64.96 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=49.7
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCH-------HHHHHHHHHHHHHHHHc----CCCCeEEEEEeCCCc
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDE-------DSFEKVKNWVKELKKML----GNDICLTIAGNKIDL 132 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl 132 (223)
++|+.+|++|+...+..|..++.++.++|||+..+.- .+-+.+.+-+..+...- -..+.+|+++||.|+
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 281 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence 6799999999999999999999999999999987652 12222333222222211 124789999999997
No 363
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.30 E-value=9.4e-07 Score=65.41 Aligned_cols=99 Identities=18% Similarity=0.113 Sum_probs=63.1
Q ss_pred CCCcc-ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHH
Q psy8722 71 TAGQE-RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS 149 (223)
Q Consensus 71 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (223)
.||+. +........+.++|.+++|+|+.++...... .+...+ .+.|+++|+||+|+..... .....++...
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHh
Confidence 34433 3334445677899999999999876432211 111211 2468999999999843211 1122233333
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 150 VGAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 150 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
.+..++.+|++++.|++++.+.+...+.
T Consensus 74 ~~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 74 KGEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 4557899999999999999988887753
No 364
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.29 E-value=3.4e-05 Score=63.79 Aligned_cols=154 Identities=17% Similarity=0.237 Sum_probs=84.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCC--------------Ccc-------ccceeEEEEE---EEE-CCeEEEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEK--------------HIT-------TLQASFLNKK---LNI-AGKRLNLAI 68 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~--------------~~~-------~~~~~~~~~~---~~~-~~~~~~~~i 68 (223)
-.+=|.|+||.-+||||||++|......+. ..+ |+...|.+.. +.+ ++-.+++++
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 356789999999999999999863222111 011 2222332222 223 567789999
Q ss_pred EeCCCc--------c--cccccc-cccc------------------cc-CC-EEEEEEECCC----HHHHHHHH-HHHHH
Q psy8722 69 WDTAGQ--------E--RFHALG-PIYY------------------RM-SN-GAVLVYDITD----EDSFEKVK-NWVKE 112 (223)
Q Consensus 69 ~D~~G~--------~--~~~~~~-~~~~------------------~~-~d-~~i~v~d~~~----~~s~~~~~-~~~~~ 112 (223)
+|+.|- . .-.++. .-++ .. +. ++++.-|-+- ++.+.... +.+.+
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 999981 1 000110 1111 11 12 3444444322 34444433 35555
Q ss_pred HHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC--CCCHHHHHHHH
Q psy8722 113 LKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM--NRGIEEMFLEL 172 (223)
Q Consensus 113 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i 172 (223)
+... ++|+++++|-.+-. .....+...++..+++++++.+++.. .+.+..+++.+
T Consensus 176 Lk~i---gKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~v 232 (492)
T PF09547_consen 176 LKEI---GKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEV 232 (492)
T ss_pred HHHh---CCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHH
Confidence 5554 78999999987632 22245667778888888887766542 23444444433
No 365
>KOG1491|consensus
Probab=98.28 E-value=4e-06 Score=66.93 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=62.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC---------------CeEEEEEEEeCCCccc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA---------------GKRLNLAIWDTAGQER 76 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~i~D~~G~~~ 76 (223)
..+.++|.++|-|++|||||+|.|+.....+...|..+.+-....+.+. -....+.++|++|.-+
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 3478899999999999999999999777777777776666544444332 1234688999999443
Q ss_pred c----cccccc---ccccCCEEEEEEECCC
Q psy8722 77 F----HALGPI---YYRMSNGAVLVYDITD 99 (223)
Q Consensus 77 ~----~~~~~~---~~~~~d~~i~v~d~~~ 99 (223)
- ..+... -++.+|+++-|+++.+
T Consensus 97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred CcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 2 222222 3577999999988654
No 366
>KOG0085|consensus
Probab=98.28 E-value=8.7e-07 Score=67.14 Aligned_cols=119 Identities=12% Similarity=0.174 Sum_probs=76.3
Q ss_pred eEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHH-------HHHHHHHHHHHHHHcC----CCCeEEEEEeCC
Q psy8722 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDS-------FEKVKNWVKELKKMLG----NDICLTIAGNKI 130 (223)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~----~~~p~ivv~nK~ 130 (223)
.++.+.+.|.+|+......|..++.++..++|.+.+++.+. -+.+++-...++.... .+.++|+++||.
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence 44677888999998888889999999888888777665321 1112222222222211 467899999999
Q ss_pred Ccccc----------------ccCCHHHHHHHHHHh----CC------cEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 131 DLEKQ----------------RTVMQEDAEKYAQSV----GA------VHFHTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 131 Dl~~~----------------~~~~~~~~~~~~~~~----~~------~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
|+-++ .+...+.+.+|..++ +- -...+.|.+.+|+.-+|..+-+.+++..
T Consensus 277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 97321 111234444454332 21 1355788899999999999988887654
No 367
>KOG4273|consensus
Probab=98.26 E-value=6.7e-06 Score=63.12 Aligned_cols=113 Identities=16% Similarity=0.209 Sum_probs=73.2
Q ss_pred eEEEEECCCCC--cHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeE--EEEEEEeCCCccccccccccccccCCEE
Q psy8722 16 FKVVLLGEGCV--GKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKR--LNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 16 ~~I~viG~~~~--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.-++|+|-+|+ ||.+|+++|....+.....+.....+..+++..+... +.+.+.-... .+.-..........++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicd--e~~lpn~~~a~pl~a~ 82 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICD--EKFLPNAEIAEPLQAF 82 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccc--hhccCCcccccceeeE
Confidence 35789999998 9999999999877776655555555655555433222 2222222221 1211122233556789
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCc
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (223)
++|||++.......+..|+.......- -..+.++||.|-
T Consensus 83 vmvfdlse~s~l~alqdwl~htdinsf--dillcignkvdr 121 (418)
T KOG4273|consen 83 VMVFDLSEKSGLDALQDWLPHTDINSF--DILLCIGNKVDR 121 (418)
T ss_pred EEEEeccchhhhHHHHhhccccccccc--hhheeccccccc
Confidence 999999999999999999886543211 134667899995
No 368
>KOG0463|consensus
Probab=98.25 E-value=7.9e-06 Score=66.25 Aligned_cols=161 Identities=13% Similarity=0.116 Sum_probs=88.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCC------------------ccccceeEEEE-------------------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKH------------------ITTLQASFLNK------------------- 55 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~------------------- 55 (223)
--+++|+++|...+|||||+-.|+........ .+..|.++...
T Consensus 131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred ceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 44789999999999999999666544433211 11222221110
Q ss_pred EEEECCeEEEEEEEeCCCccccccccc--cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 56 KLNIAGKRLNLAIWDTAGQERFHALGP--IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 56 ~~~~~~~~~~~~i~D~~G~~~~~~~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
.-...+..-.+.|+|.+|+++|..... .--+..|...+++-++-.. ..-.++.+.. ...-.+|+++|++|+|+-
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgL---ALaL~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGL---ALALHVPVFVVVTKIDMC 286 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhh---hhhhcCcEEEEEEeeccC
Confidence 000123334577889999998865432 2234467777777665421 1111111111 122368999999999984
Q ss_pred ccccCCHHHHHHH---HHH--------------------------hCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 134 KQRTVMQEDAEKY---AQS--------------------------VGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 134 ~~~~~~~~~~~~~---~~~--------------------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
-.+. ..+..+.+ .+. .-+|+|++|-.+|.|+.- +..+.+.+..+
T Consensus 287 PANi-LqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L-LkmFLNlls~R 359 (641)
T KOG0463|consen 287 PANI-LQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL-LKMFLNLLSLR 359 (641)
T ss_pred cHHH-HHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH-HHHHHhhcCcc
Confidence 3321 22222222 111 124678999999999764 44444444433
No 369
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.24 E-value=3.4e-06 Score=60.34 Aligned_cols=76 Identities=21% Similarity=0.175 Sum_probs=52.2
Q ss_pred cccccCCEEEEEEECCCHHHHH--HHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCC
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFE--KVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAK 160 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (223)
..+..+|++++|+|+.++.+.. .+..|+... ..++|+++++||+|+..... .....+..+..+..++.+||.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence 3567899999999998876543 344444332 13689999999999853321 233445556667789999999
Q ss_pred CCCC
Q psy8722 161 MNRG 164 (223)
Q Consensus 161 ~~~~ 164 (223)
++.+
T Consensus 81 ~~~~ 84 (141)
T cd01857 81 KENA 84 (141)
T ss_pred CCCc
Confidence 8763
No 370
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.23 E-value=1.5e-06 Score=63.12 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
-.++++|++|||||||+|.|...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46889999999999999999854
No 371
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.21 E-value=4e-06 Score=66.89 Aligned_cols=101 Identities=17% Similarity=0.090 Sum_probs=65.2
Q ss_pred CCCcc-ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHH
Q psy8722 71 TAGQE-RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS 149 (223)
Q Consensus 71 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (223)
.|||. +........+..+|++++|+|+.++.+.... .+...+ .+.|+++|+||+|+..... .+...+....
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~ 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEE 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHH
Confidence 46644 2333445677899999999999876443221 111111 2579999999999843211 1222222333
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 150 VGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 150 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
.+.+++.+|++++.|+.++.+.+.+.+.+.
T Consensus 76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 76 KGIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 456789999999999999998887776543
No 372
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.20 E-value=0.0001 Score=53.09 Aligned_cols=147 Identities=18% Similarity=0.256 Sum_probs=78.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCC-Ccccccc------------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA-GQERFHA------------ 79 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~~~~~~------------ 79 (223)
...+||.+-|+||+||||++.++...--... ... ..+....+.-++..+-|.+.|+. |...+.+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kv-gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKV-GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcC--cee-eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 4578999999999999999988763222111 111 12333444455666667777776 4221100
Q ss_pred -------------ccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHH
Q psy8722 80 -------------LGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKY 146 (223)
Q Consensus 80 -------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 146 (223)
..+..+..||+ +++|--.+--+ ...++...+......+.|++.++.+.+- . ..+++
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDv--IIIDEIGpMEl-ks~~f~~~ve~vl~~~kpliatlHrrsr---~----P~v~~- 148 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADV--IIIDEIGPMEL-KSKKFREAVEEVLKSGKPLIATLHRRSR---H----PLVQR- 148 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCE--EEEecccchhh-ccHHHHHHHHHHhcCCCcEEEEEecccC---C----hHHHH-
Confidence 01112233444 44564443211 1234555666666667898888887652 1 11222
Q ss_pred HHHhCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 147 AQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 147 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
....+-.++. .+..|-+.+++.|...+
T Consensus 149 ik~~~~v~v~---lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 149 IKKLGGVYVF---LTPENRNRILNEILSVL 175 (179)
T ss_pred hhhcCCEEEE---EccchhhHHHHHHHHHh
Confidence 2333333333 44566667777776655
No 373
>PRK01889 GTPase RsgA; Reviewed
Probab=98.15 E-value=9.7e-06 Score=66.96 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=60.4
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHH-HhCCcEEEecCCCC
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-SVGAVHFHTSAKMN 162 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 162 (223)
...++|.+++|+++..+-....+..++..+... +++.++|+||+||.... .+....+.. ..+.+++.+|++++
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g 182 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDG 182 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCC
Confidence 358899999999997555555677776666654 57778999999996431 111222222 34678999999999
Q ss_pred CCHHHHHHHHH
Q psy8722 163 RGIEEMFLELS 173 (223)
Q Consensus 163 ~~i~~~~~~i~ 173 (223)
.|++++..++.
T Consensus 183 ~gl~~L~~~L~ 193 (356)
T PRK01889 183 EGLDVLAAWLS 193 (356)
T ss_pred ccHHHHHHHhh
Confidence 99999888774
No 374
>PRK12289 GTPase RsgA; Reviewed
Probab=98.15 E-value=3.8e-06 Score=68.97 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|++|||||||||.|...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc
Confidence 3899999999999999999843
No 375
>PRK12288 GTPase RsgA; Reviewed
Probab=98.14 E-value=5.2e-06 Score=68.16 Aligned_cols=58 Identities=16% Similarity=0.244 Sum_probs=34.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC-CCCCcc---ccceeEEE--EEEEECCeEEEEEEEeCCCcccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKF-NEKHIT---TLQASFLN--KKLNIAGKRLNLAIWDTAGQERF 77 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~-~~~~~~---~~~~~~~~--~~~~~~~~~~~~~i~D~~G~~~~ 77 (223)
-++|+|.+|||||||||+|..... .....+ ..|.+.+. ..+.+.+. ..++||||-..+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 378999999999999999985432 222222 22222221 12233322 247899996544
No 376
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.11 E-value=2e-05 Score=63.99 Aligned_cols=95 Identities=18% Similarity=0.144 Sum_probs=55.5
Q ss_pred EEEEEEEeCCCccccccc----cccc--------cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCC
Q psy8722 63 RLNLAIWDTAGQERFHAL----GPIY--------YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKI 130 (223)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 130 (223)
.+.+.|+||||....... ...+ -...+..++|+|++... +.+... ..+.... -+.-+|+||.
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~~---~~~giIlTKl 269 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEAV---GLTGIILTKL 269 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhhC---CCCEEEEECC
Confidence 357889999996432211 1111 12467889999998542 233321 2222221 2446888999
Q ss_pred CccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 131 DLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 131 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
|.... .-.+...+...+.|+.+++ +|++++++-
T Consensus 270 D~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 270 DGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 95322 2234455677799998888 577776553
No 377
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.10 E-value=1.6e-05 Score=58.04 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~ 38 (223)
++++|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999998744
No 378
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.10 E-value=6.5e-06 Score=66.06 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=65.9
Q ss_pred CCCcc-ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHH
Q psy8722 71 TAGQE-RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS 149 (223)
Q Consensus 71 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (223)
.|||. +........+..+|++++|+|+.++.+... .++... .. +.|+++|+||+|+..... .+...++...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~---~~-~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKI---IG-NKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHH---hC-CCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 56754 223344566789999999999987644222 111111 11 579999999999853211 1222233334
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 150 VGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 150 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
.+.+++.+|++++.|++++.+.+.+.+...
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 467789999999999999998887776543
No 379
>KOG1424|consensus
Probab=98.10 E-value=3.8e-06 Score=70.39 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=43.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh-hCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV-EDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
..+.|.+||.|||||||+||.|. ......+..|+.+.+|....+ .. .+.+.|+||.-
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l--s~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL--SP---SVCLCDCPGLV 370 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc--CC---CceecCCCCcc
Confidence 36999999999999999999999 555667766777777655443 33 35677999954
No 380
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.09 E-value=7.8e-06 Score=64.07 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
-.++++|++|+|||||+|+|...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 37889999999999999999854
No 381
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=2.1e-05 Score=72.92 Aligned_cols=112 Identities=21% Similarity=0.204 Sum_probs=64.7
Q ss_pred EEECCCCCcHHHHHHHHhhCCCC--CCCc--cccceeEEEEEEEECCeEEEEEEEeCCCccc--------cccccccc--
Q psy8722 19 VLLGEGCVGKTSVVLRYVEDKFN--EKHI--TTLQASFLNKKLNIAGKRLNLAIWDTAGQER--------FHALGPIY-- 84 (223)
Q Consensus 19 ~viG~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~-- 84 (223)
+|||++|+||||++..- +..|+ .... ...+.........+.+ .-.++||.|... ....|..+
T Consensus 129 ~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL~ 204 (1188)
T COG3523 129 MVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFLG 204 (1188)
T ss_pred EEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence 68999999999998543 22222 1110 1111111111222333 356779999321 12233322
Q ss_pred -------cccCCEEEEEEECCCH------H---HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 85 -------YRMSNGAVLVYDITDE------D---SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 85 -------~~~~d~~i~v~d~~~~------~---s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
.+..|++|+.+|+.+- + ....+..-+.++.....-..|++|++||.|+..
T Consensus 205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 3557999999998662 1 122244456667776777899999999999844
No 382
>KOG0465|consensus
Probab=98.07 E-value=1.2e-05 Score=68.78 Aligned_cols=118 Identities=19% Similarity=0.106 Sum_probs=79.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCC-----c-----------cccceeEEEEEEEECCeEEEEEEEeCCCccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKH-----I-----------TTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 76 (223)
.+.-+|.++-+-.+||||+-++.+....-... . ...|.+....-..+..+.+.+.++|||||-+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 45668999999999999999987622111100 0 0112222222222233357888999999999
Q ss_pred cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
|.-.....++-.|++++|+|....---+...-|.+.-+ .++|.+.++||.|--.
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r----y~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKR----YNVPRICFINKMDRMG 170 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHh----cCCCeEEEEehhhhcC
Confidence 99888999999999999999877543344444555443 3789999999999533
No 383
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.07 E-value=6.3e-06 Score=68.22 Aligned_cols=55 Identities=16% Similarity=0.286 Sum_probs=36.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC------CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKF------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
.+++++|.+|||||||+|+|..... ..+..+.++.+. ..+.+.+ .+.++||||-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~--~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDL--IEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeE--EEEEeCC---CCEEEECCCCC
Confidence 4899999999999999999985332 233344444443 3333422 24688999944
No 384
>PRK13796 GTPase YqeH; Provisional
Probab=98.07 E-value=1.7e-05 Score=65.83 Aligned_cols=92 Identities=26% Similarity=0.347 Sum_probs=60.8
Q ss_pred ccccccccccccCC-EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHH----HHHHHHh
Q psy8722 76 RFHALGPIYYRMSN-GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDA----EKYAQSV 150 (223)
Q Consensus 76 ~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~~~~~ 150 (223)
.|....... ..++ .+++|+|+.+.. ..|...+.+... +.|+++|+||+|+... ....+.. ..+++..
T Consensus 58 ~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence 344433333 3444 889999998743 235555555443 5789999999999532 2233333 3345556
Q ss_pred CC---cEEEecCCCCCCHHHHHHHHHHH
Q psy8722 151 GA---VHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 151 ~~---~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
++ .++.+||+++.|++++++.|.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 65 57899999999999999998654
No 385
>KOG1487|consensus
Probab=98.07 E-value=5.3e-05 Score=58.59 Aligned_cols=88 Identities=16% Similarity=0.113 Sum_probs=56.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc----cc---cccccccccC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER----FH---ALGPIYYRMS 88 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~---~~~~~~~~~~ 88 (223)
-+|.++|-|.+||||++..+.+.........+++.......+.+++ -++++.|.||.-. -. ...-...+.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 4899999999999999999986554433223333333333444555 4577779999321 11 1123345778
Q ss_pred CEEEEEEECCCHHHHHH
Q psy8722 89 NGAVLVYDITDEDSFEK 105 (223)
Q Consensus 89 d~~i~v~d~~~~~s~~~ 105 (223)
+.+++|.|+..+-+-..
T Consensus 138 nli~~vld~~kp~~hk~ 154 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKK 154 (358)
T ss_pred cEEEEEeeccCcccHHH
Confidence 99999999887655444
No 386
>PRK13695 putative NTPase; Provisional
Probab=98.06 E-value=0.00014 Score=53.83 Aligned_cols=79 Identities=9% Similarity=0.178 Sum_probs=43.4
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG 164 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (223)
+..++. +++|--.+.... -..++..+......+.|++++.+|... .....++....+..++++ +.+|
T Consensus 94 l~~~~~--lllDE~~~~e~~-~~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~~~~ 160 (174)
T PRK13695 94 LEEADV--IIIDEIGKMELK-SPKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---TPEN 160 (174)
T ss_pred cCCCCE--EEEECCCcchhh-hHHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---cchh
Confidence 345555 677842111010 123445555554557899999998532 223344555556667766 3456
Q ss_pred HHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRM 176 (223)
Q Consensus 165 i~~~~~~i~~~~ 176 (223)
-+++.+.+.+.+
T Consensus 161 r~~~~~~~~~~~ 172 (174)
T PRK13695 161 RDSLPFEILNRL 172 (174)
T ss_pred hhhHHHHHHHHH
Confidence 667777776654
No 387
>PRK13796 GTPase YqeH; Provisional
Probab=98.03 E-value=9.1e-06 Score=67.37 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=36.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCC------CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKF------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
..++.++|.+|||||||||+|..... ..+..++++.+. ..+.+++. ..++||||-.
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~--~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK--IEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee--EEEEcCCC---cEEEECCCcc
Confidence 34799999999999999999984321 123334444443 33334332 3688999953
No 388
>KOG0466|consensus
Probab=98.00 E-value=2.5e-06 Score=67.25 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=72.2
Q ss_pred EEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC--CHHH
Q psy8722 65 NLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV--MQED 142 (223)
Q Consensus 65 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~ 142 (223)
.+.|.|+||++-..+.+-.-..-.|++++.+..++...-.+..+.+..+.-.. -..++++-||+|+..+.+. ..+.
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiDli~e~~A~eq~e~ 203 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLIKESQALEQHEQ 203 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhhhhhHHHHHHHHHH
Confidence 46688999998654443332333578888887776422222222222222221 2578888999999654432 2244
Q ss_pred HHHHHHHh---CCcEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 143 AEKYAQSV---GAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 143 ~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
+..|.+.- +.|++.+||-.+.|++-+.+.|...+....
T Consensus 204 I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 204 IQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred HHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 55555433 568999999999999999999988775443
No 389
>KOG0459|consensus
Probab=97.99 E-value=9.7e-06 Score=66.18 Aligned_cols=159 Identities=14% Similarity=0.063 Sum_probs=93.2
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCC-------------------------------CCCCCccccceeEEEEEEE
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDK-------------------------------FNEKHITTLQASFLNKKLN 58 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 58 (223)
.++...+|+.++|+..+||||+-..++... ..+......+.......+.
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 345778999999999999999875542110 0111111122223333333
Q ss_pred ECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHH---HHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccc
Q psy8722 59 IAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDED---SFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~ 134 (223)
... -.+.+.|.||+..|....-.-..+||..++|+++...+ .|+.--+......-+ ...-...++++||.|-..
T Consensus 154 te~--~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPt 231 (501)
T KOG0459|consen 154 TEN--KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 231 (501)
T ss_pred ecc--eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCc
Confidence 334 35667799999988777666667899999999985432 233322222222111 122356888899999532
Q ss_pred c-c-cC----CHHHHHHHHHHhCC------cEEEecCCCCCCHHHHHH
Q psy8722 135 Q-R-TV----MQEDAEKYAQSVGA------VHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 135 ~-~-~~----~~~~~~~~~~~~~~------~~~~~Sa~~~~~i~~~~~ 170 (223)
. + .. ..+....|...+|+ .|+.+|..+|.++.+...
T Consensus 232 vnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 232 VNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 1 1 11 12334444444442 488999999999887553
No 390
>PRK14974 cell division protein FtsY; Provisional
Probab=97.98 E-value=2.7e-05 Score=63.60 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=54.7
Q ss_pred EEEEEEeCCCccccccc----cccc--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 64 LNLAIWDTAGQERFHAL----GPIY--YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
+.+.++||+|....... ...+ ..+.|..++|+|+..... .+ .....+.... ..--+|+||.|.....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d--~~-~~a~~f~~~~---~~~giIlTKlD~~~~~- 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND--AV-EQAREFNEAV---GIDGVILTKVDADAKG- 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh--HH-HHHHHHHhcC---CCCEEEEeeecCCCCc-
Confidence 46889999996532211 1111 125788899999876431 11 1112232221 2346788999974322
Q ss_pred CCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 138 VMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
=.+..++...+.|+.+++ +|++++++..
T Consensus 296 ---G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 296 ---GAALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred ---cHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 223444556788888887 5888876543
No 391
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.94 E-value=5.8e-05 Score=60.03 Aligned_cols=94 Identities=15% Similarity=0.084 Sum_probs=55.2
Q ss_pred EEEEEEeCCCcccccccc----cc--------ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q psy8722 64 LNLAIWDTAGQERFHALG----PI--------YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKID 131 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~----~~--------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (223)
+.+.|+||+|........ .. .-..+|..++|+|+... .+.+.. ...+.+.. -+--+|+||.|
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~-~~~f~~~~---~~~g~IlTKlD 228 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQ-AKVFNEAV---GLTGIILTKLD 228 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHH-HHHHHhhC---CCCEEEEEccC
Confidence 678899999965432221 11 11237899999999753 222322 22333222 24568889999
Q ss_pred ccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 132 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
..... -.+.......+.|+.+++ +|++++++-
T Consensus 229 e~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 229 GTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 64332 233445556688888887 577776543
No 392
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.90 E-value=3.6e-05 Score=56.73 Aligned_cols=138 Identities=18% Similarity=0.270 Sum_probs=67.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeC-CCcc--------------------
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDT-AGQE-------------------- 75 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~~-------------------- 75 (223)
||++.|++|+|||||++++...--... .+.. .+....+.-++..+-+.+.|. .|..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~-~~v~--Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKG-LPVG--GFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTC-GGEE--EEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccC-Cccc--eEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 689999999999999999873221110 1111 122233334444555555565 3311
Q ss_pred --cccccccccccc--CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC
Q psy8722 76 --RFHALGPIYYRM--SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG 151 (223)
Q Consensus 76 --~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 151 (223)
.+.......+.. .+.=++|+|--.+-- .....|.+.+......+.|++.++.+.. ...-++++....+
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~liviDEIG~mE-l~~~~F~~~v~~~l~s~~~vi~vv~~~~-------~~~~l~~i~~~~~ 149 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSDLIVIDEIGKME-LKSPGFREAVEKLLDSNKPVIGVVHKRS-------DNPFLEEIKRRPD 149 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCHEEEE---STTC-CC-CHHHHHHHHHHCTTSEEEEE--SS---------SCCHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhhcCCCCEEEEeccchhh-hcCHHHHHHHHHHHcCCCcEEEEEecCC-------CcHHHHHHHhCCC
Confidence 111111112222 133377888543210 1122356666666667789988888762 0122345566667
Q ss_pred CcEEEecCCCCCCH
Q psy8722 152 AVHFHTSAKMNRGI 165 (223)
Q Consensus 152 ~~~~~~Sa~~~~~i 165 (223)
+.+++++..+.+.+
T Consensus 150 ~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 150 VKIFEVTEENRDAL 163 (168)
T ss_dssp SEEEE--TTTCCCH
T ss_pred cEEEEeChhHHhhH
Confidence 88888877655544
No 393
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.83 E-value=5.2e-05 Score=60.84 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~ 39 (223)
-.++++|++|+|||||+|.|.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 479999999999999999998543
No 394
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.83 E-value=4e-05 Score=60.88 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-.+++|.+|+|||||+|+|..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCc
Confidence 578999999999999999973
No 395
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=0.00067 Score=58.35 Aligned_cols=141 Identities=13% Similarity=0.100 Sum_probs=74.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC------CC----CCcccc---------cee--EEEEEEEE---------CCe
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF------NE----KHITTL---------QAS--FLNKKLNI---------AGK 62 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~------~~----~~~~~~---------~~~--~~~~~~~~---------~~~ 62 (223)
...-.|+|+|+.|+||||++..|...-. .. ...... +.. +......- .-.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 3456889999999999999988753110 00 000000 000 00011000 012
Q ss_pred EEEEEEEeCCCcccccccccc---ccc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 63 RLNLAIWDTAGQERFHALGPI---YYR--MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
.+.++|+||+|.......... .+. .....++|++..- +...+...+..+... .+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~--- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETG--- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCcc---
Confidence 367889999995432211100 010 1234567777664 233334433333332 36678999999632
Q ss_pred CCHHHHHHHHHHhCCcEEEecCCCCCCH
Q psy8722 138 VMQEDAEKYAQSVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (223)
..-.+.......+.++.+++. |+.|
T Consensus 499 -~lG~aLsv~~~~~LPI~yvt~--GQ~V 523 (559)
T PRK12727 499 -RFGSALSVVVDHQMPITWVTD--GQRV 523 (559)
T ss_pred -chhHHHHHHHHhCCCEEEEeC--CCCc
Confidence 234566667778888777665 5555
No 396
>PRK00098 GTPase RsgA; Reviewed
Probab=97.77 E-value=5.7e-05 Score=60.99 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~ 39 (223)
..++++|++|+|||||+|.|.+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 368999999999999999998543
No 397
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00024 Score=58.73 Aligned_cols=140 Identities=12% Similarity=0.074 Sum_probs=70.9
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCC---CCCCccccceeE------------------EEEEEEE---------CCeE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKF---NEKHITTLQASF------------------LNKKLNI---------AGKR 63 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~------------------~~~~~~~---------~~~~ 63 (223)
+.-.++|+|++|+||||++..|..... ........+.+. ......- .-..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 345889999999999999999863211 100000000000 0000100 0122
Q ss_pred EEEEEEeCCCcccccccc----ccc--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCC-----CeEEEEEeCCCc
Q psy8722 64 LNLAIWDTAGQERFHALG----PIY--YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-----ICLTIAGNKIDL 132 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-----~p~ivv~nK~Dl 132 (223)
..+.++||+|........ ..+ .....-.++|++++... +.+...+..+....... -+--+|+||.|.
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE 293 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--DTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE 293 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--HHHHHHHHHHHHhhcccccccCCCCEEEEecccc
Confidence 467889999955332221 111 12234458888887632 22222223333321100 123577799996
Q ss_pred cccccCCHHHHHHHHHHhCCcEEEecC
Q psy8722 133 EKQRTVMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
... .=.+..+....+.|+.+++.
T Consensus 294 t~~----~G~~l~~~~~~~lPi~yvt~ 316 (374)
T PRK14722 294 ASN----LGGVLDTVIRYKLPVHYVST 316 (374)
T ss_pred CCC----ccHHHHHHHHHCcCeEEEec
Confidence 432 23445566777877766654
No 398
>KOG2484|consensus
Probab=97.75 E-value=3.2e-05 Score=63.12 Aligned_cols=63 Identities=22% Similarity=0.303 Sum_probs=45.1
Q ss_pred CCCCCCCeeeEEEEECCCCCcHHHHHHHHh-hCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCc
Q psy8722 7 DRNSSSTYSFKVVLLGEGCVGKTSVVLRYV-EDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74 (223)
Q Consensus 7 ~~~~~~~~~~~I~viG~~~~GKSsli~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (223)
.+...-...+++.|+|.|++||||+||+|. .........++.+....... .+. .+.|.|.||.
T Consensus 244 ~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~--Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 244 CRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK--LDK---KIRLLDSPGI 307 (435)
T ss_pred ccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee--ccC---CceeccCCce
Confidence 334445789999999999999999999999 55556666666665543332 222 4667799993
No 399
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.75 E-value=0.00023 Score=52.67 Aligned_cols=83 Identities=19% Similarity=0.161 Sum_probs=45.6
Q ss_pred EEEEEEeCCCccccccc----cccc--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 64 LNLAIWDTAGQERFHAL----GPIY--YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
..+.++|++|...+... ...+ ....+.+++|+|...... ...+...+.+..+ ...+|.||.|.....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~~~- 155 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDARG- 155 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCCCc-
Confidence 45778899996432111 1111 124899999999865432 2233344433322 356777999964322
Q ss_pred CCHHHHHHHHHHhCCcEEE
Q psy8722 138 VMQEDAEKYAQSVGAVHFH 156 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~ 156 (223)
-.+...+...++|+..
T Consensus 156 ---g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 156 ---GAALSIRAVTGKPIKF 171 (173)
T ss_pred ---chhhhhHHHHCcCeEe
Confidence 2223366666766543
No 400
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.74 E-value=0.00032 Score=55.84 Aligned_cols=91 Identities=21% Similarity=0.209 Sum_probs=66.0
Q ss_pred ccccccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCC
Q psy8722 82 PIYYRMSNGAVLVYDITDED-SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAK 160 (223)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (223)
+.-..+.|-+++|+.+.+|+ +...+.+++-..... ++..++++||+|+.+......++.......++.+++.+|++
T Consensus 74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~ 150 (301)
T COG1162 74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAK 150 (301)
T ss_pred CCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCc
Confidence 33445678888888888876 455566666665553 56677889999996654433345566677789999999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy8722 161 MNRGIEEMFLELSQR 175 (223)
Q Consensus 161 ~~~~i~~~~~~i~~~ 175 (223)
++.++.++.+.+...
T Consensus 151 ~~~~~~~l~~~l~~~ 165 (301)
T COG1162 151 NGDGLEELAELLAGK 165 (301)
T ss_pred CcccHHHHHHHhcCC
Confidence 999999988776544
No 401
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.64 E-value=0.00021 Score=51.61 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=36.1
Q ss_pred EEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q psy8722 63 RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKID 131 (223)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (223)
.+.+.|+||+|.... ...++..+|-++++....-.+.+.-++- ..+. ..=++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~------~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKA--GIME------IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhh--hHhh------hcCEEEEeCCC
Confidence 367889999985422 2347788999999988774333322221 1222 23368889987
No 402
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.63 E-value=0.0002 Score=60.17 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=36.9
Q ss_pred EEEEEEEeCCCcccccccc----ccc--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 63 RLNLAIWDTAGQERFHALG----PIY--YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
.+.+.|+||+|........ ..+ ..+.+-+++|+|+.-...- ......+.... .+--+|+||.|..
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~~---~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDSV---DVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhcc---CCcEEEEECccCC
Confidence 3678899999954332111 111 2346789999998754322 11222333221 2556888999963
No 403
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.60 E-value=0.00071 Score=51.81 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=32.9
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCc
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (223)
...+++|.+|+|+|.+- .++...++........ + =.++.+|+||.|-
T Consensus 151 g~~~~vD~vivVvDpS~-~sl~taeri~~L~~el-g-~k~i~~V~NKv~e 197 (255)
T COG3640 151 GTIEGVDLVIVVVDPSY-KSLRTAERIKELAEEL-G-IKRIFVVLNKVDE 197 (255)
T ss_pred ccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHh-C-CceEEEEEeeccc
Confidence 34477999999999985 4555555544444443 1 2689999999984
No 404
>KOG2485|consensus
Probab=97.60 E-value=0.00013 Score=57.86 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=40.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCC------CCCCCccccceeEEEEEEEECCeEEEEEEEeCCCc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDK------FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (223)
-+.++++.|+|-||+|||||||++.... ......++.+..+.......+.. .+.+.||||-
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp--~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP--PVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC--ceEEecCCCc
Confidence 3568899999999999999999975322 22344555555554433323333 3667799993
No 405
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.58 E-value=0.00032 Score=41.37 Aligned_cols=45 Identities=22% Similarity=0.376 Sum_probs=30.2
Q ss_pred ccCCEEEEEEECCCH--HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q psy8722 86 RMSNGAVLVYDITDE--DSFEKVKNWVKELKKMLGNDICLTIAGNKID 131 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (223)
+-.++++|++|+++. .+.+....++..++..+. ++|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 447899999999985 456666678888888764 589999999998
No 406
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.53 E-value=0.00041 Score=49.45 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=60.0
Q ss_pred EECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC--CeEEEEEEEeCCCccccccccccccccCCEEEEEEEC
Q psy8722 20 LLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDI 97 (223)
Q Consensus 20 viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 97 (223)
.-|.+|+|||++--.+...-.. ....+.- ...... .-.+.+.++|+|+.. .......+..+|.++++.+.
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~-----vd~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~ 76 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAK-LGKRVLL-----LDADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTP 76 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHH-CCCcEEE-----EECCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCC
Confidence 4477899999997665421111 1011111 111111 111568899999743 23334578889999999998
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCc
Q psy8722 98 TDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132 (223)
Q Consensus 98 ~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (223)
+. .++......+..+.... ...++.+++|+.+-
T Consensus 77 ~~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 77 EP-TSITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred Ch-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 74 45555455455554432 34577899999874
No 407
>KOG3859|consensus
Probab=97.50 E-value=0.00024 Score=55.63 Aligned_cols=59 Identities=25% Similarity=0.414 Sum_probs=42.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCc----cccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHI----TTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
.+||+.+|..|.|||||+..|.+..+..... ++.........+.-.+..+++.+.||.|
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 6899999999999999999999877754432 2333332233333345567888999998
No 408
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.45 E-value=0.00078 Score=45.29 Aligned_cols=82 Identities=11% Similarity=0.145 Sum_probs=50.2
Q ss_pred EEEEC-CCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 18 VVLLG-EGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 18 I~viG-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
|++.| ..|+||||+...+...-.... .+. ..+..+.. +.+.++|+|+.... .....+..+|.++++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~-~~v-------l~~d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRG-KRV-------LLIDLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCC-CcE-------EEEeCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence 56777 468999999877652211111 111 11112211 67889999986432 23366778999999998
Q ss_pred CCCHHHHHHHHHHHH
Q psy8722 97 ITDEDSFEKVKNWVK 111 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~ 111 (223)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 76 456666666655
No 409
>KOG0469|consensus
Probab=97.45 E-value=0.00067 Score=57.31 Aligned_cols=116 Identities=14% Similarity=0.147 Sum_probs=73.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCC------Ccc--------ccceeEEEEEEEE----------------CCe
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEK------HIT--------TLQASFLNKKLNI----------------AGK 62 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~------~~~--------~~~~~~~~~~~~~----------------~~~ 62 (223)
.+--|+.+|-+..-|||||-..|....-.-. ... ..+.++...-+.. ++.
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 3445889999999999999999863222110 001 1111221111111 244
Q ss_pred EEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCc
Q psy8722 63 RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132 (223)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (223)
.+.+.++|.|||-+|.+.....++-.|++++|+|.-+.--.+.-.-+.+.+. ..+.-+++.||.|-
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~----ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA----ERIKPVLVMNKMDR 162 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHH----hhccceEEeehhhH
Confidence 5788899999999999999999999999999999876432222111223333 23445678899994
No 410
>KOG2423|consensus
Probab=97.44 E-value=4.1e-05 Score=62.57 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=53.7
Q ss_pred CCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccc--ccccccc
Q psy8722 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH--ALGPIYY 85 (223)
Q Consensus 8 ~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~~~~~~~ 85 (223)
......++|-|.+||.||+||||+||.|.......- .|..|.+....++..-. .+-++|+||-.... +.....+
T Consensus 300 kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItLmk---rIfLIDcPGvVyps~dset~ivL 375 (572)
T KOG2423|consen 300 KLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITLMK---RIFLIDCPGVVYPSSDSETDIVL 375 (572)
T ss_pred hhccCccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHHHh---ceeEecCCCccCCCCCchHHHHh
Confidence 345567899999999999999999999986555422 23333322222222211 35677999954332 3333333
Q ss_pred ccCCEEEEEEECCCHHH
Q psy8722 86 RMSNGAVLVYDITDEDS 102 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~~s 102 (223)
+ +++=|=.+.+++.
T Consensus 376 k---GvVRVenv~~pe~ 389 (572)
T KOG2423|consen 376 K---GVVRVENVKNPED 389 (572)
T ss_pred h---ceeeeeecCCHHH
Confidence 3 4666777777653
No 411
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.43 E-value=0.0013 Score=43.09 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=43.6
Q ss_pred EEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc-cccccccCCEEEEEEE
Q psy8722 18 VVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL-GPIYYRMSNGAVLVYD 96 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d 96 (223)
+++.|..|+||||+...+...-.... . +...++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g------~----~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG------K----RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC------C----eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 67889999999999988763221111 1 111122 5788899985432221 1345567899999998
Q ss_pred CCCH
Q psy8722 97 ITDE 100 (223)
Q Consensus 97 ~~~~ 100 (223)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7754
No 412
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.43 E-value=0.0009 Score=47.23 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=21.8
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCC
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~ 39 (223)
..-.+++.|++|+|||++++.+....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998543
No 413
>PRK10867 signal recognition particle protein; Provisional
Probab=97.40 E-value=0.0011 Score=56.16 Aligned_cols=86 Identities=17% Similarity=0.100 Sum_probs=47.5
Q ss_pred EEEEEEeCCCccccccc-c---ccc--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 64 LNLAIWDTAGQERFHAL-G---PIY--YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~-~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
+.+.|+||+|....... . ..+ .-..+.+++|+|.... .........+.... ...-+|+||.|-....
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~---~i~giIlTKlD~~~rg- 256 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL---GLTGVILTKLDGDARG- 256 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC---CCCEEEEeCccCcccc-
Confidence 56889999995432111 1 111 1246778999998653 22333333344322 1235677999953221
Q ss_pred CCHHHHHHHHHHhCCcEEEecC
Q psy8722 138 VMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
=.+.......+.|+.++..
T Consensus 257 ---G~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 257 ---GAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ---cHHHHHHHHHCcCEEEEeC
Confidence 1255566777888766544
No 414
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.40 E-value=0.0017 Score=43.96 Aligned_cols=103 Identities=15% Similarity=0.135 Sum_probs=60.2
Q ss_pred EEEEC-CCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 18 VVLLG-EGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 18 I~viG-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
|+++| ..|+||||+...|...-.... +.+........+... .+.++|+|+.... .....+..+|.++++.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~-----~~~~~l~d~d~~~~~-D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~ 73 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEA-----GRRVLLVDLDLQFGD-DYVVVDLGRSLDE--VSLAALDQADRVFLVTQ 73 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcC-----CCcEEEEECCCCCCC-CEEEEeCCCCcCH--HHHHHHHHcCeEEEEec
Confidence 34544 477999998766642111110 111111111111111 6788899985432 23446688999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCC-CCeEEEEEeC
Q psy8722 97 ITDEDSFEKVKNWVKELKKMLGN-DICLTIAGNK 129 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK 129 (223)
.+. .+...+..+++.++....+ ...+.+|+|+
T Consensus 74 ~~~-~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 74 QDL-PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CCh-HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 764 5677777777777765433 4567777775
No 415
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.38 E-value=0.021 Score=41.88 Aligned_cols=141 Identities=11% Similarity=0.073 Sum_probs=92.2
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+...|+++|..+.++..|.+.+...... .....+... -.|-.... ...-...|.+
T Consensus 12 ~ln~atiLLVg~e~~~~~~LA~a~l~~~~~--------~~l~Vh~a~-----------sLPLp~e~----~~lRprIDlI 68 (176)
T PF11111_consen 12 ELNTATILLVGTEEALLQQLAEAMLEEDKE--------FKLKVHLAK-----------SLPLPSEN----NNLRPRIDLI 68 (176)
T ss_pred CcceeEEEEecccHHHHHHHHHHHHhhccc--------eeEEEEEec-----------cCCCcccc----cCCCceeEEE
Confidence 466889999999999999999999842110 111111110 11111111 1112458999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
+|++|.....|+..++.-+..+...+-.+ .+.++.+-....+...+...++.+++..+..|++.+.-...++. ..
T Consensus 69 VFvinl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~----~~ 143 (176)
T PF11111_consen 69 VFVINLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGR----TS 143 (176)
T ss_pred EEEEecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHH----HH
Confidence 99999999999999887666654433233 44555666665666778899999999999999999877665554 44
Q ss_pred HHHHHHHHH
Q psy8722 172 LSQRMLEKA 180 (223)
Q Consensus 172 i~~~~~~~~ 180 (223)
+++++++..
T Consensus 144 lAqRLL~~l 152 (176)
T PF11111_consen 144 LAQRLLRML 152 (176)
T ss_pred HHHHHHHHH
Confidence 555555443
No 416
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.37 E-value=0.006 Score=49.71 Aligned_cols=88 Identities=19% Similarity=0.094 Sum_probs=49.2
Q ss_pred EEEEEEeCCCcccccccccccc--------ccCCEEEEEEECCCHHHHHH-HHH-HHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 64 LNLAIWDTAGQERFHALGPIYY--------RMSNGAVLVYDITDEDSFEK-VKN-WVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~-~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
+...++++.|..........++ -..|+++-|+|+..-..... +.. ....+. ..=++++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia------~AD~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA------FADVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH------hCcEEEEecccCC
Confidence 5567788888443322221111 23588999999876433222 121 111121 1337889999997
Q ss_pred ccccCCHHHHHHHHHHhC--CcEEEecC
Q psy8722 134 KQRTVMQEDAEKYAQSVG--AVHFHTSA 159 (223)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa 159 (223)
+... .+..++....++ ++++.++.
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEccc
Confidence 6653 455555555555 46777766
No 417
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.34 E-value=0.0009 Score=56.52 Aligned_cols=86 Identities=17% Similarity=0.113 Sum_probs=49.5
Q ss_pred EEEEEEeCCCccccccc-cc---cc--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 64 LNLAIWDTAGQERFHAL-GP---IY--YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~-~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
+.+.|+||+|....... .. .+ .-+.+.+++|+|+... .....+...+.... ...-+|.||.|-....
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~i~giIlTKlD~~~~~- 255 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL---GLTGVVLTKLDGDARG- 255 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC---CCCEEEEeCccCcccc-
Confidence 56889999995432211 11 11 2347888999998753 23333344444332 1346778999953221
Q ss_pred CCHHHHHHHHHHhCCcEEEecC
Q psy8722 138 VMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
=.+...+...++|+.++..
T Consensus 256 ---G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 256 ---GAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ---cHHHHHHHHHCcCEEEEeC
Confidence 1256667777888766554
No 418
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.28 E-value=0.00023 Score=49.28 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.|+|.|++||||||+.+.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
No 419
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.28 E-value=0.00023 Score=52.95 Aligned_cols=23 Identities=17% Similarity=0.518 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.||+|+|+|||||||+.+.|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999855
No 420
>PRK08118 topology modulation protein; Reviewed
Probab=97.27 E-value=0.00024 Score=52.35 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
+|+|+|++|+|||||.+.|..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999874
No 421
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.26 E-value=0.0066 Score=49.49 Aligned_cols=86 Identities=10% Similarity=0.166 Sum_probs=44.6
Q ss_pred EEEEEEeCCCcccccccccccc--------ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc
Q psy8722 64 LNLAIWDTAGQERFHALGPIYY--------RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (223)
....++++.|..........++ -..+++|.|+|+.+-... +........+.. ..=+|++||+|+...
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~--~~~~~~~~~Qi~---~AD~IvlnK~Dl~~~ 165 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQ--MNQFTIAQSQVG---YADRILLTKTDVAGE 165 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhh--ccccHHHHHHHH---hCCEEEEeccccCCH
Confidence 4567789999654333332221 124789999998753221 111111111111 123688899998653
Q ss_pred ccCCHHHHHHHHHHhC--CcEEEec
Q psy8722 136 RTVMQEDAEKYAQSVG--AVHFHTS 158 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~--~~~~~~S 158 (223)
. +.+.+....++ ++++.++
T Consensus 166 ~----~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 166 A----EKLRERLARINARAPVYTVV 186 (318)
T ss_pred H----HHHHHHHHHhCCCCEEEEec
Confidence 2 44555555444 3555544
No 422
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.25 E-value=0.0056 Score=51.88 Aligned_cols=90 Identities=14% Similarity=0.083 Sum_probs=50.8
Q ss_pred EEEEEEeCCCccccc----cccccccc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc
Q psy8722 64 LNLAIWDTAGQERFH----ALGPIYYR---MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (223)
+.+.|+||+|..... .....++. ...-.++|++++-.. ..+......+... + +--+|+||.|....
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~---~-~~~vI~TKlDet~~- 372 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL---P-LDGLIFTKLDETSS- 372 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC---C-CCEEEEeccccccc-
Confidence 568899999964332 11222222 234567788876432 2333322333221 1 23578899996332
Q ss_pred cCCHHHHHHHHHHhCCcEEEecCCCCCCH
Q psy8722 137 TVMQEDAEKYAQSVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (223)
.-.+..++...+.|+.+++. |++|
T Consensus 373 ---~G~i~~~~~~~~lPv~yit~--Gq~V 396 (424)
T PRK05703 373 ---LGSILSLLIESGLPISYLTN--GQRV 396 (424)
T ss_pred ---ccHHHHHHHHHCCCEEEEeC--CCCC
Confidence 23566777888888877765 4554
No 423
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.25 E-value=0.00097 Score=47.01 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
--|++.|+.|+|||||++.+...
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999854
No 424
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.0011 Score=54.79 Aligned_cols=86 Identities=12% Similarity=0.036 Sum_probs=46.6
Q ss_pred EEEEEEeCCCccccccc----cccccc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 64 LNLAIWDTAGQERFHAL----GPIYYR--MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
+.+.|+||+|....... ...+.. ..+..++|.++.. ....+...+..+.. --+--+|+||.|....
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~~----l~i~glI~TKLDET~~-- 357 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLAE----IPIDGFIITKMDETTR-- 357 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcCc----CCCCEEEEEcccCCCC--
Confidence 57889999996433221 122222 3466677777632 22233332222221 1234677899996432
Q ss_pred CCHHHHHHHHHHhCCcEEEecC
Q psy8722 138 VMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
.=.+..++...+.|+.+++.
T Consensus 358 --~G~~Lsv~~~tglPIsylt~ 377 (407)
T PRK12726 358 --IGDLYTVMQETNLPVLYMTD 377 (407)
T ss_pred --ccHHHHHHHHHCCCEEEEec
Confidence 23345567778888777665
No 425
>PRK07261 topology modulation protein; Provisional
Probab=97.22 E-value=0.00029 Score=52.10 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+|+|+|++|+|||||.+.+..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999863
No 426
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.21 E-value=0.00039 Score=42.01 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
..+|.|+.|+|||||+.++..--
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999986433
No 427
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.18 E-value=0.00031 Score=50.05 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHh
Q psy8722 18 VVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~ 36 (223)
|+++|++|+|||||++.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999987
No 428
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.18 E-value=0.00043 Score=52.38 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++||+|+|||||++.+-.-
T Consensus 30 vv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999998643
No 429
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.0044 Score=51.76 Aligned_cols=91 Identities=12% Similarity=0.036 Sum_probs=50.5
Q ss_pred EEEEEEEeCCCcccccc----ccccccccC--C-EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc
Q psy8722 63 RLNLAIWDTAGQERFHA----LGPIYYRMS--N-GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135 (223)
Q Consensus 63 ~~~~~i~D~~G~~~~~~----~~~~~~~~~--d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (223)
.+.+.++||+|...... ....++... + -.++|+|++... ..+...+..+... -+--+++||.|-...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~~----~~~~~I~TKlDet~~ 327 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSPF----SYKTVIFTKLDETTC 327 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeccCCCc
Confidence 35788999999543221 112222221 2 578999998652 3333332322211 134577899995332
Q ss_pred ccCCHHHHHHHHHHhCCcEEEecCCCCCCH
Q psy8722 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (223)
.=.+..++...+.|+.+++. |+++
T Consensus 328 ----~G~~l~~~~~~~~Pi~yit~--Gq~v 351 (388)
T PRK12723 328 ----VGNLISLIYEMRKEVSYVTD--GQIV 351 (388)
T ss_pred ----chHHHHHHHHHCCCEEEEeC--CCCC
Confidence 23345566777888766654 5555
No 430
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.14 E-value=0.002 Score=53.44 Aligned_cols=137 Identities=16% Similarity=0.179 Sum_probs=71.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC--CCCC-ccccceeE---------------EEEEEEE------------CCe
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF--NEKH-ITTLQASF---------------LNKKLNI------------AGK 62 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~-~~~~~~~~---------------~~~~~~~------------~~~ 62 (223)
.+.-.|+++||+||||||-+-.|...-. .... ...++.|. ....+.. .-.
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~ 280 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR 280 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh
Confidence 3466899999999999999888753222 1111 01111110 0001110 112
Q ss_pred EEEEEEEeCCCccccccc----cccccccC--CEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc
Q psy8722 63 RLNLAIWDTAGQERFHAL----GPIYYRMS--NGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136 (223)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~----~~~~~~~~--d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (223)
.+.++++||.|...+... ...++... .-..+|++++-. ...+...+..++.. + .--+++||.|....
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~---~-i~~~I~TKlDET~s- 353 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF---P-IDGLIFTKLDETTS- 353 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC---C-cceeEEEcccccCc-
Confidence 357889999996654432 23333222 334567777653 34455444444432 1 23567899995332
Q ss_pred cCCHHHHHHHHHHhCCcEEEecC
Q psy8722 137 TVMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
.=....+..+.+.|+.+++-
T Consensus 354 ---~G~~~s~~~e~~~PV~YvT~ 373 (407)
T COG1419 354 ---LGNLFSLMYETRLPVSYVTN 373 (407)
T ss_pred ---hhHHHHHHHHhCCCeEEEeC
Confidence 23344556666766655543
No 431
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.10 E-value=0.00035 Score=51.14 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=17.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999843
No 432
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.08 E-value=0.00044 Score=53.08 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-|+++||+|||||||+|.+.+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998864
No 433
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.05 E-value=0.0013 Score=45.67 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
--|++-|+-|||||||.+.+..
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~ 37 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLAR 37 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999873
No 434
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.03 E-value=0.0007 Score=52.34 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-|+++|++|+|||||+|.+.+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988643
No 435
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.01 E-value=0.00071 Score=42.01 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~ 38 (223)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998744
No 436
>PRK10646 ADP-binding protein; Provisional
Probab=97.01 E-value=0.0034 Score=45.28 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-|++-|+-|+|||||.+.+...
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999743
No 437
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.98 E-value=0.0045 Score=45.96 Aligned_cols=86 Identities=20% Similarity=0.224 Sum_probs=60.0
Q ss_pred eEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHH
Q psy8722 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQE 141 (223)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 141 (223)
..+.+.++|+|+... ......+..+|.+++++..+. .+...+..++..+... +.++.+|+|+.|.... ..+
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 346788999997532 223345688999999999884 3566666666666543 4678899999986432 346
Q ss_pred HHHHHHHHhCCcEEE
Q psy8722 142 DAEKYAQSVGAVHFH 156 (223)
Q Consensus 142 ~~~~~~~~~~~~~~~ 156 (223)
+.+++++..+++++-
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 677788888887653
No 438
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.96 E-value=0.0026 Score=45.40 Aligned_cols=26 Identities=27% Similarity=0.175 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCC
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKF 40 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~ 40 (223)
.--|++-|+-|||||||.+-+...-.
T Consensus 25 g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 25 GDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 34578899999999999999984333
No 439
>KOG1534|consensus
Probab=96.95 E-value=0.0019 Score=48.70 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=19.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
.+-++|+||.|+||||+.+.+.
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~ 24 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMY 24 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHH
Confidence 4668899999999999999875
No 440
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.91 E-value=0.011 Score=50.23 Aligned_cols=86 Identities=21% Similarity=0.095 Sum_probs=46.0
Q ss_pred EEEEEEeCCCcccccccc----cc--ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 64 LNLAIWDTAGQERFHALG----PI--YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
..+.|+||+|........ .. ....+|.+++|+|+.... ........+.... ...-+|.||.|.....
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a~~- 248 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTAKG- 248 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCCcc-
Confidence 368899999965432111 11 133578899999987642 2222222233221 1235678999953221
Q ss_pred CCHHHHHHHHHHhCCcEEEecC
Q psy8722 138 VMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
=.+..+....+.|+.+++.
T Consensus 249 ---G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 249 ---GGALSAVAETGAPIKFIGT 267 (437)
T ss_pred ---cHHHHHHHHHCcCEEEEec
Confidence 2234445566666655443
No 441
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.91 E-value=0.00084 Score=47.47 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|+.|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 6899999999999999988754
No 442
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.91 E-value=0.00082 Score=52.21 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=22.9
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
-+..++++|+|++|+|||+|+..++.
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~ 35 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLY 35 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999998874
No 443
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.87 E-value=0.0013 Score=48.70 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFN 41 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~ 41 (223)
.++++|++|+|||||+|-+.+=..+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P 51 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETP 51 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCC
Confidence 7899999999999999988654443
No 444
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.87 E-value=0.0013 Score=50.22 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.6
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+++..-|+|+|++|+|||||++.+..
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 35667899999999999999999974
No 445
>PRK06217 hypothetical protein; Validated
Probab=96.86 E-value=0.00097 Score=49.85 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.+|+|+|.+|+|||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999743
No 446
>KOG0780|consensus
Probab=96.86 E-value=0.017 Score=47.54 Aligned_cols=92 Identities=14% Similarity=0.172 Sum_probs=51.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh----CCCCCC------Ccc-----------ccceeEEEEEEEE-------------C
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE----DKFNEK------HIT-----------TLQASFLNKKLNI-------------A 60 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~----~~~~~~------~~~-----------~~~~~~~~~~~~~-------------~ 60 (223)
.--|.++|-.|+||||.+-.|.. ..+... +.+ -.+..++...... .
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK 180 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK 180 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH
Confidence 44678999999999998877531 111110 000 0122222222221 2
Q ss_pred CeEEEEEEEeCCCccccc-ccccc-----ccccCCEEEEEEECCCHHHHHHH
Q psy8722 61 GKRLNLAIWDTAGQERFH-ALGPI-----YYRMSNGAVLVYDITDEDSFEKV 106 (223)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~-~~~~~-----~~~~~d~~i~v~d~~~~~s~~~~ 106 (223)
..++.++|.||+|..... ++... -.-+.|-+|+|.|++-...-...
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Q 232 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQ 232 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHH
Confidence 455889999999944322 11111 12457999999999876654443
No 447
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.86 E-value=0.00099 Score=49.94 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.|+|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999643
No 448
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.85 E-value=0.001 Score=47.26 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
|+|+|++|+|||||++.|..
T Consensus 2 i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999984
No 449
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.00093 Score=51.28 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-|+++|++|+|||||++.+-+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999998865
No 450
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.84 E-value=0.0014 Score=45.74 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFN 41 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~ 41 (223)
-.++++|++|+|||++++.+......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 47899999999999999999755443
No 451
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.82 E-value=0.0011 Score=44.78 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=18.6
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 457999999999999999875
No 452
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.81 E-value=0.0011 Score=46.20 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~ 38 (223)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999743
No 453
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.81 E-value=0.0012 Score=47.19 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.|+|+|+.|+|||||++.|.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 454
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.79 E-value=0.0011 Score=46.03 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~ 38 (223)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999743
No 455
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.0011 Score=50.21 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=18.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
.--.+++||+|+|||||++.|-
T Consensus 33 ~~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 33 NKVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred CceEEEECCCCcCHHHHHHHHH
Confidence 3456899999999999999885
No 456
>PRK03839 putative kinase; Provisional
Probab=96.78 E-value=0.0012 Score=49.14 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
+|+|+|++|+||||+.+.|..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998863
No 457
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.78 E-value=0.034 Score=40.96 Aligned_cols=84 Identities=11% Similarity=0.013 Sum_probs=51.7
Q ss_pred EEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHH
Q psy8722 65 NLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAE 144 (223)
Q Consensus 65 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 144 (223)
.+.|+|+|+.... .....+..+|.+|++++.+. .+...+..++..+... ......+++|+.+..... ..+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~~--~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMVE--GGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc--CCceEEEEEeCCcccccc--hhhHHH
Confidence 5888999985432 23345678999999998875 3455555566655542 123567889999853221 222234
Q ss_pred HHHHHhCCcEE
Q psy8722 145 KYAQSVGAVHF 155 (223)
Q Consensus 145 ~~~~~~~~~~~ 155 (223)
.+.+.++.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 55555676654
No 458
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.78 E-value=0.0015 Score=49.91 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=21.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+..-|+|+|++|+|||||++.|..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3556688999999999999999974
No 459
>PRK14530 adenylate kinase; Provisional
Probab=96.76 E-value=0.0012 Score=50.59 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
.+|+|+|++||||||+.+.|.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 389999999999999999885
No 460
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.76 E-value=0.0013 Score=48.79 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
.-.++|+|+.|+|||||++.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3478999999999999999875
No 461
>KOG3929|consensus
Probab=96.75 E-value=0.00038 Score=53.90 Aligned_cols=94 Identities=17% Similarity=0.282 Sum_probs=54.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECC-eEEEEEEEeCCCccccccccccccc--c--
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG-KRLNLAIWDTAGQERFHALGPIYYR--M-- 87 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~--~-- 87 (223)
..+..|++.|..+. |++|++.....-... .++...+|......-.+ ..-...+|+.+|......+..--+. +
T Consensus 43 ~~E~~I~~~Gn~~~--tt~I~~~FdR~e~~~-~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~ 119 (363)
T KOG3929|consen 43 KFEFFIGSKGNGGK--TTIILRCFDRDEPPK-PPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLR 119 (363)
T ss_pred cceeEEEEecCCce--eEeehhhcCcccCCC-CCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchh
Confidence 56788999998776 889988874443322 45555555443332222 2224679999986544433322221 1
Q ss_pred CCEEEEEEECCCHHH-HHHHHHH
Q psy8722 88 SNGAVLVYDITDEDS-FEKVKNW 109 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s-~~~~~~~ 109 (223)
.=++|++.|++++.. |..++..
T Consensus 120 ~~slIL~LDls~p~~~W~t~E~~ 142 (363)
T KOG3929|consen 120 TFSLILVLDLSKPNDLWPTMENL 142 (363)
T ss_pred hhhheeeeecCChHHHHHHHHHH
Confidence 125789999999643 3334433
No 462
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.74 E-value=0.0013 Score=48.80 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998743
No 463
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.72 E-value=0.0017 Score=49.54 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.+.+.|+|.|++|+|||||.+.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999998753
No 464
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.72 E-value=0.002 Score=47.96 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=21.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCC
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~ 39 (223)
+.=.++++|+.|+|||||++.+.+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 33478999999999999999887543
No 465
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.71 E-value=0.0046 Score=46.86 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~ 38 (223)
|+|+|++|+||||+++.+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988743
No 466
>PRK13949 shikimate kinase; Provisional
Probab=96.69 E-value=0.0016 Score=48.07 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
+|+|+|++|+||||+.+.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La 22 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALA 22 (169)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999998876
No 467
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.68 E-value=0.0015 Score=48.48 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-|+|+|++|+|||||++.|..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999999985
No 468
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.68 E-value=0.002 Score=47.55 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=21.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
...-+.|+|++|+|||||++++...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3446899999999999999999843
No 469
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.67 E-value=0.0018 Score=48.60 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.-.++++|++|+|||||++.+.+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457999999999999999998753
No 470
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.67 E-value=0.0015 Score=51.17 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-++++||.|+|||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999875
No 471
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.66 E-value=0.0017 Score=46.09 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998863
No 472
>PRK14532 adenylate kinase; Provisional
Probab=96.65 E-value=0.0017 Score=48.69 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=19.2
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
++|+++|++|+||||+.++|.
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la 21 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLV 21 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999886
No 473
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.65 E-value=0.0016 Score=48.56 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
.|+++|++||||||+++.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68899999999999999987
No 474
>PRK01889 GTPase RsgA; Reviewed
Probab=96.64 E-value=0.0025 Score=52.74 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
-+++++|.+|+|||||+|.+.+.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 47999999999999999999853
No 475
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.63 E-value=0.0018 Score=49.03 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~ 38 (223)
|+|.|++|+|||||++.|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999753
No 476
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.62 E-value=0.0014 Score=48.54 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=21.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCC
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~ 39 (223)
..=++|.||+|+|||||++.|....
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3457899999999999999998544
No 477
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.62 E-value=0.011 Score=48.73 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
...+|+|.|++|+|||||++.|...
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcc
Confidence 3578999999999999999999844
No 478
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.61 E-value=0.0022 Score=52.30 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhhCCC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVEDKF 40 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~~~ 40 (223)
++++||+|+|||||++.+.+-.-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999875433
No 479
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.58 E-value=0.0089 Score=47.84 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=60.4
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc---c---------
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER---F--------- 77 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---~--------- 77 (223)
++..+--+++++|++|.|||+++++|...-. ...... . ..+.|.....|.... +
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp-~~~d~~-~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHP-PQSDED-A------------ERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCC-CCCCCC-C------------ccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 3344556899999999999999999984322 111111 1 112344445543111 0
Q ss_pred ------------ccccccccccCCEEEEEEECCC---HHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCC
Q psy8722 78 ------------HALGPIYYRMSNGAVLVYDITD---EDSFEKVKNWVKELKKMLG-NDICLTIAGNKI 130 (223)
Q Consensus 78 ------------~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~ 130 (223)
.......++....=++++|--. ..+.......++.++...+ -.+|++.+|++-
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 0111234455677788888543 2344445555666655533 468999998763
No 480
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.57 E-value=0.0027 Score=48.72 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|+.|+|||||++.+.+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6899999999999999999754
No 481
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.57 E-value=0.0029 Score=48.34 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998854
No 482
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.57 E-value=0.0021 Score=48.25 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.=|+|+||+|+|||||+++|...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34889999999999999999853
No 483
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.002 Score=50.32 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-++++||.|+|||||++.+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999986
No 484
>PRK14531 adenylate kinase; Provisional
Probab=96.54 E-value=0.0023 Score=47.83 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
..+|+++|+||+||||+.+.+.
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la 23 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLC 23 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999886
No 485
>PRK00625 shikimate kinase; Provisional
Probab=96.53 E-value=0.0023 Score=47.38 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=19.1
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
.+|+++|.+|+||||+.+.+.
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La 21 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALA 21 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999885
No 486
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.53 E-value=0.0031 Score=47.98 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998754
No 487
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.53 E-value=0.003 Score=48.39 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998864
No 488
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.53 E-value=0.0032 Score=47.29 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988754
No 489
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.53 E-value=0.003 Score=49.08 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999854
No 490
>PRK08233 hypothetical protein; Provisional
Probab=96.51 E-value=0.0028 Score=47.05 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+-|+|.|++|+|||||.+.|..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 36788899999999999999974
No 491
>PRK02496 adk adenylate kinase; Provisional
Probab=96.50 E-value=0.0026 Score=47.47 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
.+|+|+|++|+||||+.+.|.
T Consensus 2 ~~i~i~G~pGsGKst~a~~la 22 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLA 22 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999886
No 492
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.50 E-value=0.0036 Score=45.83 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7889999999999999988754
No 493
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.49 E-value=0.0034 Score=47.69 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|+.|+|||||++.+.+.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 494
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.49 E-value=0.0021 Score=48.25 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
+|+|+|++|+||||+.+.|..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 495
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.49 E-value=0.0085 Score=49.13 Aligned_cols=24 Identities=17% Similarity=0.247 Sum_probs=21.7
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
...+|+|.|++|+|||||++.|..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~ 182 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALR 182 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHh
Confidence 367999999999999999999874
No 496
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.49 E-value=0.0033 Score=48.19 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~ 39 (223)
=.++++|+.|+|||||++.+.+..
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 368899999999999999988643
No 497
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.48 E-value=0.0035 Score=47.97 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988754
No 498
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.48 E-value=0.0035 Score=47.95 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998854
No 499
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.48 E-value=0.0025 Score=49.38 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
++|+|+|++||||||+.+.|.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La 27 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILS 27 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 789999999999999999875
No 500
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.48 E-value=0.0023 Score=49.30 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
|++.|++|||||||++.|..
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 68999999999999999874
Done!