Query psy8722
Match_columns 223
No_of_seqs 149 out of 1831
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 17:35:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8722.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8722hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 9.9E-44 3.4E-48 272.0 19.6 171 10-180 8-178 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 3.6E-36 1.2E-40 228.5 26.2 176 11-186 4-179 (206)
3 3cpj_B GTP-binding protein YPT 100.0 4.9E-36 1.7E-40 230.7 20.8 177 11-187 9-185 (223)
4 2bov_A RAla, RAS-related prote 100.0 2.4E-35 8.2E-40 223.6 22.9 177 3-180 2-179 (206)
5 2fu5_C RAS-related protein RAB 100.0 5.8E-35 2E-39 217.6 20.6 171 12-182 5-175 (183)
6 1vg8_A RAS-related protein RAB 100.0 2.1E-34 7.1E-39 218.7 23.2 171 12-183 5-180 (207)
7 2ew1_A RAS-related protein RAB 100.0 2.3E-34 8E-39 218.1 23.0 171 11-181 22-192 (201)
8 3tkl_A RAS-related protein RAB 100.0 3.8E-34 1.3E-38 215.4 23.8 173 11-183 12-184 (196)
9 2a5j_A RAS-related protein RAB 100.0 4.9E-34 1.7E-38 214.3 23.9 171 11-181 17-187 (191)
10 2hup_A RAS-related protein RAB 100.0 1.9E-34 6.6E-39 218.4 20.8 170 10-179 24-194 (201)
11 2gf9_A RAS-related protein RAB 100.0 1.3E-33 4.3E-38 211.7 24.9 169 12-180 19-187 (189)
12 1z08_A RAS-related protein RAB 100.0 3.5E-34 1.2E-38 210.6 21.5 167 12-178 3-169 (170)
13 3tw8_B RAS-related protein RAB 100.0 1.3E-33 4.4E-38 209.5 24.5 172 11-183 5-176 (181)
14 2bme_A RAB4A, RAS-related prot 100.0 5.8E-34 2E-38 212.6 22.5 172 12-183 7-178 (186)
15 1z0f_A RAB14, member RAS oncog 100.0 6.6E-34 2.3E-38 210.7 22.0 168 11-178 11-178 (179)
16 2g6b_A RAS-related protein RAB 100.0 1.7E-33 5.8E-38 209.0 23.6 171 10-180 5-176 (180)
17 2efe_B Small GTP-binding prote 100.0 9E-34 3.1E-38 210.6 22.1 171 10-180 7-177 (181)
18 2oil_A CATX-8, RAS-related pro 100.0 1.6E-33 5.4E-38 211.8 22.8 170 11-180 21-190 (193)
19 1zbd_A Rabphilin-3A; G protein 100.0 2.6E-33 8.8E-38 212.2 24.2 172 11-182 4-175 (203)
20 2o52_A RAS-related protein RAB 100.0 7.2E-34 2.4E-38 215.1 20.4 171 12-182 22-192 (200)
21 2fg5_A RAB-22B, RAS-related pr 100.0 7E-34 2.4E-38 213.7 19.6 175 5-179 13-187 (192)
22 1r2q_A RAS-related protein RAB 100.0 2.1E-33 7.1E-38 206.3 21.4 165 12-176 3-167 (170)
23 1z0j_A RAB-22, RAS-related pro 100.0 4.3E-33 1.5E-37 204.7 22.9 165 12-176 3-167 (170)
24 1g16_A RAS-related protein SEC 100.0 1.2E-33 4.1E-38 207.7 19.8 165 14-179 2-166 (170)
25 1z2a_A RAS-related protein RAB 100.0 1.6E-33 5.3E-38 206.7 20.3 166 12-178 2-167 (168)
26 3dz8_A RAS-related protein RAB 100.0 1.3E-34 4.5E-39 217.4 14.8 171 11-181 19-189 (191)
27 3bc1_A RAS-related protein RAB 100.0 4E-33 1.4E-37 209.1 22.8 174 9-182 5-189 (195)
28 1ek0_A Protein (GTP-binding pr 100.0 2.7E-33 9.4E-38 205.6 21.2 163 14-176 2-167 (170)
29 3kkq_A RAS-related protein M-R 100.0 3.7E-33 1.3E-37 207.9 22.0 166 12-178 15-182 (183)
30 2il1_A RAB12; G-protein, GDP, 100.0 1.3E-33 4.3E-38 212.4 19.6 168 11-178 22-190 (192)
31 3t5g_A GTP-binding protein RHE 100.0 1.6E-33 5.6E-38 209.4 19.9 169 12-181 3-172 (181)
32 2y8e_A RAB-protein 6, GH09086P 100.0 2.7E-33 9.2E-38 207.4 20.0 168 11-178 10-177 (179)
33 2fn4_A P23, RAS-related protei 100.0 6.8E-33 2.3E-37 205.6 21.9 169 11-180 5-174 (181)
34 3c5c_A RAS-like protein 12; GD 100.0 2.8E-33 9.5E-38 209.7 19.9 167 10-178 16-186 (187)
35 2hxs_A RAB-26, RAS-related pro 100.0 2E-33 6.9E-38 208.2 18.4 167 12-178 3-173 (178)
36 3cbq_A GTP-binding protein REM 100.0 1.9E-33 6.4E-38 212.1 18.1 170 10-179 18-189 (195)
37 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.5E-32 5.2E-37 203.3 22.5 167 11-178 3-174 (177)
38 3cph_A RAS-related protein SEC 100.0 1.2E-32 4.1E-37 209.9 22.5 171 9-180 14-184 (213)
39 2p5s_A RAS and EF-hand domain 100.0 2.1E-33 7.3E-38 212.2 17.9 168 11-178 24-197 (199)
40 3reg_A RHO-like small GTPase; 100.0 9.8E-33 3.3E-37 207.6 21.3 172 7-180 15-190 (194)
41 3ihw_A Centg3; RAS, centaurin, 100.0 1.2E-32 4.1E-37 205.8 21.6 165 10-181 15-183 (184)
42 2j0v_A RAC-like GTP-binding pr 100.0 2.7E-33 9.2E-38 213.5 18.2 167 13-181 7-183 (212)
43 3q85_A GTP-binding protein REM 100.0 7.3E-33 2.5E-37 203.5 19.9 165 15-179 2-168 (169)
44 3q3j_B RHO-related GTP-binding 100.0 5.7E-33 1.9E-37 212.4 20.0 171 10-182 22-207 (214)
45 1z06_A RAS-related protein RAB 100.0 7.3E-33 2.5E-37 207.5 20.1 167 12-178 17-188 (189)
46 2nzj_A GTP-binding protein REM 100.0 1.4E-32 4.6E-37 203.1 20.8 167 13-180 2-171 (175)
47 2iwr_A Centaurin gamma 1; ANK 100.0 3E-32 1E-36 202.0 22.4 164 13-183 5-174 (178)
48 3oes_A GTPase rhebl1; small GT 100.0 5.4E-33 1.9E-37 210.3 18.5 170 12-182 21-191 (201)
49 2f7s_A C25KG, RAS-related prot 100.0 2.9E-33 1E-37 214.1 17.1 172 11-182 21-203 (217)
50 1ky3_A GTP-binding protein YPT 100.0 1.3E-32 4.6E-37 204.2 20.2 170 11-180 4-180 (182)
51 1u8z_A RAS-related protein RAL 100.0 2.2E-32 7.4E-37 200.3 20.4 165 13-178 2-167 (168)
52 2atx_A Small GTP binding prote 100.0 4.8E-32 1.6E-36 203.8 22.7 167 9-177 12-192 (194)
53 2q3h_A RAS homolog gene family 100.0 4.2E-32 1.4E-36 205.2 22.3 170 10-181 15-198 (201)
54 2a9k_A RAS-related protein RAL 100.0 3.8E-32 1.3E-36 202.6 21.6 169 11-180 14-183 (187)
55 4dsu_A GTPase KRAS, isoform 2B 100.0 8.8E-32 3E-36 201.1 23.4 169 13-183 2-171 (189)
56 1x3s_A RAS-related protein RAB 100.0 2.3E-32 8E-37 205.3 20.2 168 12-180 12-180 (195)
57 2atv_A RERG, RAS-like estrogen 100.0 3.4E-32 1.2E-36 205.1 21.0 168 11-180 24-193 (196)
58 3clv_A RAB5 protein, putative; 100.0 7.2E-32 2.5E-36 203.8 22.8 165 13-180 5-206 (208)
59 2yc2_C IFT27, small RAB-relate 100.0 6.1E-33 2.1E-37 210.5 16.9 171 13-183 18-197 (208)
60 1c1y_A RAS-related protein RAP 100.0 4.7E-32 1.6E-36 198.5 20.2 163 14-177 2-166 (167)
61 3q72_A GTP-binding protein RAD 100.0 4.4E-32 1.5E-36 198.8 19.8 164 14-179 1-165 (166)
62 1kao_A RAP2A; GTP-binding prot 100.0 4.9E-32 1.7E-36 198.2 19.7 163 14-177 2-165 (167)
63 1m7b_A RND3/RHOE small GTP-bin 100.0 4.2E-32 1.4E-36 202.6 19.0 165 12-178 4-183 (184)
64 2g3y_A GTP-binding protein GEM 100.0 8.3E-32 2.8E-36 205.2 20.3 168 11-179 33-204 (211)
65 1mh1_A RAC1; GTP-binding, GTPa 100.0 3.2E-31 1.1E-35 197.5 22.0 165 13-179 3-181 (186)
66 1gwn_A RHO-related GTP-binding 100.0 9.8E-32 3.4E-36 204.2 19.4 165 12-178 25-204 (205)
67 3con_A GTPase NRAS; structural 100.0 6.8E-31 2.3E-35 196.8 23.6 167 12-180 18-185 (190)
68 2j1l_A RHO-related GTP-binding 100.0 1.2E-31 4E-36 205.0 19.3 167 12-180 31-211 (214)
69 2gco_A H9, RHO-related GTP-bin 100.0 7E-31 2.4E-35 198.7 22.5 163 13-177 23-199 (201)
70 2gf0_A GTP-binding protein DI- 100.0 3.9E-32 1.3E-36 204.8 15.4 165 12-178 5-171 (199)
71 2erx_A GTP-binding protein DI- 100.0 2.7E-31 9.2E-36 195.3 18.5 162 14-176 2-165 (172)
72 2cjw_A GTP-binding protein GEM 100.0 1.4E-30 4.8E-35 195.8 22.6 167 13-180 4-174 (192)
73 4gzl_A RAS-related C3 botulinu 100.0 2.3E-31 7.9E-36 201.9 18.1 169 6-176 21-203 (204)
74 3l0i_B RAS-related protein RAB 100.0 6E-34 2.1E-38 215.2 3.8 167 12-178 30-196 (199)
75 3t1o_A Gliding protein MGLA; G 100.0 4.5E-32 1.6E-36 203.9 13.8 171 8-182 7-196 (198)
76 2fv8_A H6, RHO-related GTP-bin 100.0 1.5E-30 5.2E-35 197.8 22.3 165 13-179 23-201 (207)
77 4djt_A GTP-binding nuclear pro 100.0 1.2E-31 4E-36 205.3 16.0 171 11-181 7-178 (218)
78 2ce2_X GTPase HRAS; signaling 100.0 1.4E-30 4.8E-35 190.1 21.0 162 14-177 2-164 (166)
79 3bwd_D RAC-like GTP-binding pr 100.0 6E-32 2E-36 200.9 13.9 164 12-177 5-180 (182)
80 2f9l_A RAB11B, member RAS onco 100.0 1E-29 3.5E-34 192.0 23.4 168 13-180 3-170 (199)
81 3gj0_A GTP-binding nuclear pro 100.0 3.6E-31 1.2E-35 203.1 14.5 170 8-180 8-177 (221)
82 4bas_A ADP-ribosylation factor 100.0 2.6E-30 8.9E-35 194.8 16.9 166 10-181 12-192 (199)
83 1oix_A RAS-related protein RAB 100.0 1.1E-28 3.9E-33 185.2 22.7 166 11-176 25-190 (191)
84 1ksh_A ARF-like protein 2; sma 100.0 3.9E-29 1.3E-33 186.6 18.7 160 13-179 16-181 (186)
85 1f6b_A SAR1; gtpases, N-termin 100.0 1.4E-29 4.9E-34 191.2 15.6 157 12-175 22-196 (198)
86 2h57_A ADP-ribosylation factor 100.0 6.3E-29 2.2E-33 186.2 17.9 161 12-178 18-187 (190)
87 1upt_A ARL1, ADP-ribosylation 100.0 1E-29 3.5E-34 186.9 13.1 159 13-178 5-169 (171)
88 1r8s_A ADP-ribosylation factor 100.0 4.4E-30 1.5E-34 187.7 10.5 157 16-179 1-163 (164)
89 1m2o_B GTP-binding protein SAR 100.0 6.4E-29 2.2E-33 186.4 17.1 157 12-175 20-189 (190)
90 1zd9_A ADP-ribosylation factor 100.0 7.3E-30 2.5E-34 191.1 11.6 161 13-179 20-186 (188)
91 2wkq_A NPH1-1, RAS-related C3 100.0 2.5E-28 8.4E-33 197.9 20.5 164 13-178 153-330 (332)
92 2zej_A Dardarin, leucine-rich 100.0 3.7E-30 1.3E-34 192.1 8.9 165 14-179 1-179 (184)
93 1zj6_A ADP-ribosylation factor 100.0 6.4E-29 2.2E-33 185.7 15.3 162 13-181 14-181 (187)
94 3th5_A RAS-related C3 botulinu 99.9 1.1E-31 3.7E-36 203.6 0.0 169 7-177 22-204 (204)
95 2b6h_A ADP-ribosylation factor 100.0 8.3E-30 2.9E-34 191.5 9.9 159 12-177 26-190 (192)
96 2h17_A ADP-ribosylation factor 100.0 7.2E-29 2.5E-33 184.5 13.9 157 12-175 18-180 (181)
97 1fzq_A ADP-ribosylation factor 100.0 1.1E-28 3.8E-33 183.6 14.8 161 12-179 13-179 (181)
98 2x77_A ADP-ribosylation factor 100.0 2.9E-29 9.9E-34 187.8 11.6 160 13-179 20-185 (189)
99 3llu_A RAS-related GTP-binding 100.0 1.5E-29 5.3E-34 190.6 9.9 163 9-176 14-195 (196)
100 1moz_A ARL1, ADP-ribosylation 100.0 2.7E-28 9.2E-33 181.4 15.1 160 13-179 16-181 (183)
101 3c5h_A Glucocorticoid receptor 100.0 7.3E-29 2.5E-33 194.4 10.0 166 10-177 14-254 (255)
102 2wji_A Ferrous iron transport 100.0 9.1E-28 3.1E-32 176.1 14.3 154 14-176 2-163 (165)
103 2qu8_A Putative nucleolar GTP- 100.0 3.7E-27 1.3E-31 181.7 17.3 170 13-185 27-212 (228)
104 2lkc_A Translation initiation 99.9 4.4E-27 1.5E-31 173.9 15.2 156 12-179 5-172 (178)
105 3r7w_A Gtpase1, GTP-binding pr 99.9 2.5E-27 8.6E-32 190.3 14.0 165 14-182 2-185 (307)
106 2fh5_B SR-beta, signal recogni 99.9 1.7E-27 5.9E-32 181.6 10.3 161 12-175 4-213 (214)
107 3r7w_B Gtpase2, GTP-binding pr 99.9 5.1E-28 1.8E-32 193.4 6.1 164 17-187 1-183 (331)
108 2wjg_A FEOB, ferrous iron tran 99.9 1.8E-26 6.3E-31 172.2 13.5 159 13-180 5-171 (188)
109 3iev_A GTP-binding protein ERA 99.9 2.3E-27 7.9E-32 190.6 8.5 200 9-213 4-221 (308)
110 2cxx_A Probable GTP-binding pr 99.9 7.6E-27 2.6E-31 174.4 10.4 156 16-180 2-186 (190)
111 3o47_A ADP-ribosylation factor 99.9 4.2E-27 1.4E-31 190.7 8.6 159 13-178 163-327 (329)
112 3a1s_A Iron(II) transport prot 99.9 1E-25 3.6E-30 176.6 15.5 157 12-177 2-166 (258)
113 2gj8_A MNME, tRNA modification 99.9 1.3E-26 4.4E-31 171.1 9.1 155 13-177 2-165 (172)
114 3lvq_E ARF-GAP with SH3 domain 99.9 5.1E-25 1.7E-29 187.9 18.1 164 13-183 320-489 (497)
115 1svi_A GTP-binding protein YSX 99.9 7E-26 2.4E-30 170.0 10.6 158 12-176 20-193 (195)
116 2dyk_A GTP-binding protein; GT 99.9 8.8E-26 3E-30 164.1 10.8 150 16-176 2-160 (161)
117 3dpu_A RAB family protein; roc 99.9 4.5E-26 1.6E-30 195.8 8.8 165 11-179 37-209 (535)
118 3iby_A Ferrous iron transport 99.9 3.1E-25 1E-29 173.7 10.2 151 16-175 2-164 (256)
119 3b1v_A Ferrous iron uptake tra 99.9 4.1E-25 1.4E-29 174.3 10.4 153 14-176 2-162 (272)
120 3pqc_A Probable GTP-binding pr 99.9 1.2E-24 4E-29 163.0 12.4 159 10-178 18-194 (195)
121 3k53_A Ferrous iron transport 99.9 2.7E-24 9.3E-29 169.8 13.0 157 14-178 2-166 (271)
122 3i8s_A Ferrous iron transport 99.9 5.8E-25 2E-29 173.9 9.2 155 14-177 2-168 (274)
123 2e87_A Hypothetical protein PH 99.9 5.2E-23 1.8E-27 168.5 19.1 167 13-184 165-342 (357)
124 1nrj_B SR-beta, signal recogni 99.9 3.9E-25 1.3E-29 168.9 5.1 145 11-164 8-170 (218)
125 1wf3_A GTP-binding protein; GT 99.9 4E-25 1.4E-29 176.8 4.3 191 13-212 5-212 (301)
126 2hjg_A GTP-binding protein ENG 99.9 5.8E-24 2E-28 178.5 10.8 163 13-181 173-352 (436)
127 3gee_A MNME, tRNA modification 99.9 1.8E-23 6.3E-28 176.3 13.9 157 14-177 232-397 (476)
128 4dhe_A Probable GTP-binding pr 99.9 3.1E-24 1.1E-28 164.4 8.2 164 11-180 25-213 (223)
129 4dcu_A GTP-binding protein ENG 99.9 2E-23 6.8E-28 176.2 11.7 167 12-184 192-375 (456)
130 3qq5_A Small GTP-binding prote 99.9 5.6E-24 1.9E-28 176.8 5.7 159 10-177 29-195 (423)
131 1ega_A Protein (GTP-binding pr 99.9 3.8E-23 1.3E-27 165.5 7.2 193 13-212 6-213 (301)
132 1lnz_A SPO0B-associated GTP-bi 99.9 1.4E-22 4.7E-27 164.4 9.4 157 17-178 160-330 (342)
133 1xzp_A Probable tRNA modificat 99.9 4.3E-22 1.5E-26 168.1 12.7 153 15-178 243-405 (482)
134 1mky_A Probable GTP-binding pr 99.9 1E-21 3.4E-26 165.0 14.3 151 16-178 2-166 (439)
135 3lxx_A GTPase IMAP family memb 99.9 3.4E-21 1.2E-25 149.3 16.1 167 8-178 22-214 (239)
136 3sjy_A Translation initiation 99.9 3.3E-21 1.1E-25 160.2 16.5 163 11-176 4-190 (403)
137 1cip_A Protein (guanine nucleo 99.9 2.9E-21 1E-25 157.1 15.3 123 55-179 186-345 (353)
138 2xtp_A GTPase IMAP family memb 99.9 1.4E-21 4.9E-26 153.2 12.6 165 11-180 18-210 (260)
139 1wb1_A Translation elongation 99.9 1.8E-21 6.1E-26 164.9 13.4 157 12-177 16-188 (482)
140 3geh_A MNME, tRNA modification 99.9 3.4E-22 1.2E-26 168.0 8.7 154 14-179 223-385 (462)
141 3cb4_D GTP-binding protein LEP 99.9 2.1E-21 7.1E-26 167.6 13.6 158 14-177 3-181 (599)
142 3ohm_A Guanine nucleotide-bind 99.9 3.9E-21 1.3E-25 154.3 14.1 124 54-179 159-319 (327)
143 2qtf_A Protein HFLX, GTP-bindi 99.9 5.4E-21 1.9E-25 156.4 15.2 165 14-181 177-357 (364)
144 3j2k_7 ERF3, eukaryotic polype 99.9 1.5E-21 5.2E-26 163.7 11.9 159 10-170 12-217 (439)
145 2ywe_A GTP-binding protein LEP 99.9 3.7E-21 1.3E-25 165.8 14.4 160 12-177 3-183 (600)
146 1s0u_A EIF-2-gamma, translatio 99.9 4.6E-21 1.6E-25 159.6 14.4 158 13-176 6-196 (408)
147 1kk1_A EIF2gamma; initiation o 99.9 4.6E-21 1.6E-25 159.7 13.1 159 12-176 7-198 (410)
148 3p26_A Elongation factor 1 alp 99.8 2.2E-21 7.6E-26 164.6 10.4 152 13-168 31-228 (483)
149 2ged_A SR-beta, signal recogni 99.8 2.1E-21 7.2E-26 145.3 9.1 117 12-137 45-173 (193)
150 1mky_A Probable GTP-binding pr 99.8 1.1E-20 3.9E-25 158.6 14.3 162 13-180 178-357 (439)
151 2xtz_A Guanine nucleotide-bind 99.8 1.1E-20 3.8E-25 153.7 13.5 119 62-180 181-347 (354)
152 3izy_P Translation initiation 99.8 7.3E-23 2.5E-27 174.2 -0.3 159 13-176 2-166 (537)
153 3lxw_A GTPase IMAP family memb 99.8 3.2E-20 1.1E-24 144.5 14.5 163 12-178 18-208 (247)
154 1zcb_A G alpha I/13; GTP-bindi 99.8 4.5E-20 1.6E-24 150.6 15.5 123 56-180 195-355 (362)
155 3t5d_A Septin-7; GTP-binding p 99.8 1.8E-21 6.2E-26 153.8 7.0 159 13-175 6-201 (274)
156 1azs_C GS-alpha; complex (lyas 99.8 7.5E-20 2.6E-24 150.5 16.0 123 57-181 212-388 (402)
157 3tr5_A RF-3, peptide chain rel 99.8 1.1E-20 3.6E-25 161.4 10.8 116 13-134 11-148 (528)
158 2hjg_A GTP-binding protein ENG 99.8 8.7E-22 3E-26 165.2 3.6 151 16-177 4-164 (436)
159 1jny_A EF-1-alpha, elongation 99.8 1.4E-21 4.8E-26 163.9 4.7 155 13-170 4-205 (435)
160 1g7s_A Translation initiation 99.8 8.4E-20 2.9E-24 157.6 15.8 158 14-178 4-218 (594)
161 1zun_B Sulfate adenylate trans 99.8 1.6E-20 5.3E-25 157.5 10.5 157 9-170 18-216 (434)
162 2qag_A Septin-2, protein NEDD5 99.8 2E-21 6.7E-26 159.1 4.9 161 13-179 35-234 (361)
163 2elf_A Protein translation elo 99.8 1.7E-20 5.7E-25 153.9 10.0 147 17-179 23-181 (370)
164 4fid_A G protein alpha subunit 99.8 4.6E-20 1.6E-24 148.6 11.9 116 63-178 160-328 (340)
165 1r5b_A Eukaryotic peptide chai 99.8 4.2E-21 1.4E-25 162.2 5.6 155 13-169 41-243 (467)
166 1d2e_A Elongation factor TU (E 99.8 1.6E-20 5.3E-25 155.8 8.8 159 14-176 2-193 (397)
167 2c78_A Elongation factor TU-A; 99.8 6.5E-21 2.2E-25 158.5 6.0 148 11-164 7-180 (405)
168 3izq_1 HBS1P, elongation facto 99.8 5.6E-20 1.9E-24 159.5 10.5 155 12-168 164-362 (611)
169 1zo1_I IF2, translation initia 99.8 1.3E-21 4.5E-26 165.3 -0.3 153 13-174 2-163 (501)
170 1f60_A Elongation factor EEF1A 99.8 2.5E-20 8.6E-25 157.1 6.1 152 12-168 4-202 (458)
171 3def_A T7I23.11 protein; chlor 99.8 1.2E-18 4.2E-23 136.7 13.7 124 13-139 34-170 (262)
172 3avx_A Elongation factor TS, e 99.8 1.6E-19 5.6E-24 163.1 8.4 160 11-174 292-482 (1289)
173 3mca_A HBS1, elongation factor 99.8 1.3E-20 4.5E-25 163.0 0.6 150 12-166 174-371 (592)
174 2aka_B Dynamin-1; fusion prote 99.8 1.3E-19 4.4E-24 144.7 5.6 159 12-174 23-249 (299)
175 4dcu_A GTP-binding protein ENG 99.8 1.2E-19 4.1E-24 153.0 5.2 152 14-176 22-183 (456)
176 2dy1_A Elongation factor G; tr 99.8 2.4E-18 8.1E-23 150.9 12.4 116 12-133 6-139 (665)
177 1pui_A ENGB, probable GTP-bind 99.8 2.7E-18 9.2E-23 130.0 9.2 159 11-178 22-199 (210)
178 1dar_A EF-G, elongation factor 99.8 1.3E-17 4.6E-22 146.7 14.4 120 9-134 6-143 (691)
179 1h65_A Chloroplast outer envel 99.8 2.9E-17 9.8E-22 129.4 14.9 122 13-137 37-171 (270)
180 1udx_A The GTP-binding protein 99.7 1.2E-17 4.1E-22 138.5 12.6 159 17-179 159-326 (416)
181 1u0l_A Probable GTPase ENGC; p 99.7 1.8E-18 6.2E-23 138.3 6.5 134 30-174 32-169 (301)
182 3t34_A Dynamin-related protein 99.7 1.3E-18 4.4E-23 142.6 5.6 155 16-172 35-255 (360)
183 2j69_A Bacterial dynamin-like 99.7 2.6E-17 9.1E-22 144.9 14.1 166 13-181 67-328 (695)
184 2h5e_A Peptide chain release f 99.7 4.5E-17 1.5E-21 139.2 14.8 116 13-134 11-148 (529)
185 2qnr_A Septin-2, protein NEDD5 99.7 1.1E-18 3.7E-23 139.5 4.0 161 13-178 16-214 (301)
186 2rdo_7 EF-G, elongation factor 99.7 1.5E-16 5.1E-21 140.2 16.3 121 10-134 5-148 (704)
187 1wxq_A GTP-binding protein; st 99.7 1.2E-18 4.2E-23 143.9 2.8 85 16-100 1-114 (397)
188 2qag_C Septin-7; cell cycle, c 99.7 1.2E-17 4E-22 138.6 8.7 159 13-175 29-224 (418)
189 2xex_A Elongation factor G; GT 99.7 1.3E-16 4.4E-21 140.5 15.6 118 11-134 6-141 (693)
190 1jwy_B Dynamin A GTPase domain 99.7 4.5E-17 1.5E-21 130.9 9.0 112 64-178 131-262 (315)
191 3vqt_A RF-3, peptide chain rel 99.7 1.2E-15 4.2E-20 130.8 13.8 116 13-134 29-166 (548)
192 2wsm_A Hydrogenase expression/ 99.6 2.9E-16 9.8E-21 119.8 8.1 155 14-179 29-215 (221)
193 1jal_A YCHF protein; nucleotid 99.6 4.1E-15 1.4E-19 120.8 14.6 147 15-161 2-240 (363)
194 2hf9_A Probable hydrogenase ni 99.6 1.7E-18 6E-23 132.7 -6.7 154 14-178 37-224 (226)
195 1n0u_A EF-2, elongation factor 99.6 1.9E-15 6.6E-20 135.6 9.6 118 12-133 16-163 (842)
196 2x2e_A Dynamin-1; nitration, h 99.6 1.1E-16 3.6E-21 130.9 0.8 159 13-174 29-254 (353)
197 3p32_A Probable GTPase RV1496/ 99.6 7.2E-16 2.5E-20 126.0 5.2 103 64-178 172-284 (355)
198 2dby_A GTP-binding protein; GD 99.6 1.6E-14 5.5E-19 118.0 10.5 156 16-171 2-255 (368)
199 2qpt_A EH domain-containing pr 99.5 4.2E-15 1.5E-19 127.6 5.2 122 11-135 61-233 (550)
200 2www_A Methylmalonic aciduria 99.5 6.1E-15 2.1E-19 120.1 4.9 103 64-178 167-279 (349)
201 4fn5_A EF-G 1, elongation fact 99.5 2E-13 6.7E-18 120.8 14.7 119 10-132 8-149 (709)
202 3j25_A Tetracycline resistance 99.5 5.8E-15 2E-19 129.0 4.1 112 16-133 3-132 (638)
203 4a9a_A Ribosome-interacting GT 99.5 5.5E-13 1.9E-17 108.9 13.8 134 15-152 72-222 (376)
204 1yrb_A ATP(GTP)binding protein 99.5 4.2E-13 1.4E-17 104.8 11.4 110 64-178 109-257 (262)
205 2p67_A LAO/AO transport system 99.5 4.3E-14 1.5E-18 114.8 4.9 103 64-177 149-260 (341)
206 2yv5_A YJEQ protein; hydrolase 99.4 7.1E-13 2.4E-17 105.8 9.9 97 74-173 66-164 (302)
207 3zvr_A Dynamin-1; hydrolase, D 99.4 5.6E-14 1.9E-18 123.6 3.3 157 13-175 49-275 (772)
208 2qm8_A GTPase/ATPase; G protei 99.3 9E-13 3.1E-17 106.7 5.1 103 64-177 148-260 (337)
209 2ohf_A Protein OLA1, GTP-bindi 99.3 1.6E-12 5.5E-17 106.6 5.2 90 13-102 20-131 (396)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 5.5E-11 1.9E-15 97.7 14.2 87 13-99 18-127 (392)
211 3l82_B F-box only protein 4; T 99.2 1.1E-11 3.7E-16 92.3 4.3 103 73-178 111-223 (227)
212 3l2o_B F-box only protein 4; s 99.1 1.1E-10 3.8E-15 91.0 5.3 107 71-179 194-309 (312)
213 3ec1_A YQEH GTPase; atnos1, at 98.9 1.9E-10 6.4E-15 94.3 -0.5 137 15-161 162-314 (369)
214 3h2y_A GTPase family protein; 98.8 3.7E-09 1.3E-13 86.5 6.6 96 73-175 55-157 (368)
215 2qag_B Septin-6, protein NEDD5 98.8 6.4E-09 2.2E-13 86.1 7.0 113 16-133 43-189 (427)
216 3sop_A Neuronal-specific septi 98.8 1.2E-08 4.3E-13 79.9 7.5 135 15-156 2-178 (270)
217 2j37_W Signal recognition part 98.7 6.4E-09 2.2E-13 88.1 4.5 152 13-175 99-310 (504)
218 1tq4_A IIGP1, interferon-induc 98.7 1.4E-07 4.9E-12 78.0 12.3 161 15-183 69-258 (413)
219 3h2y_A GTPase family protein; 98.7 7.6E-10 2.6E-14 90.6 -1.3 131 15-155 160-307 (368)
220 3ec1_A YQEH GTPase; atnos1, at 98.7 1.1E-08 3.8E-13 83.8 3.9 96 73-175 57-159 (369)
221 1puj_A YLQF, conserved hypothe 98.6 3.5E-08 1.2E-12 77.8 6.2 100 70-179 5-107 (282)
222 1puj_A YLQF, conserved hypothe 98.5 1.1E-07 3.9E-12 74.9 5.1 58 13-75 118-176 (282)
223 3cnl_A YLQF, putative uncharac 98.4 1.2E-07 4.1E-12 73.9 3.0 56 16-76 100-156 (262)
224 1f5n_A Interferon-induced guan 98.2 9.2E-07 3.2E-11 76.2 4.9 27 13-39 36-62 (592)
225 3dm5_A SRP54, signal recogniti 98.2 3.1E-06 1.1E-10 70.4 7.2 86 64-159 183-274 (443)
226 3cnl_A YLQF, putative uncharac 98.1 7.5E-07 2.6E-11 69.4 2.2 94 71-175 4-98 (262)
227 2v3c_C SRP54, signal recogniti 98.1 1.4E-05 4.7E-10 66.6 8.7 83 64-157 181-271 (432)
228 1t9h_A YLOQ, probable GTPase E 98.0 3.6E-06 1.2E-10 66.9 3.8 89 79-170 78-169 (307)
229 3szr_A Interferon-induced GTP- 97.8 1.8E-05 6E-10 68.9 5.5 25 17-41 47-71 (608)
230 1j8m_F SRP54, signal recogniti 97.8 2.3E-05 7.7E-10 62.1 5.7 90 64-166 181-279 (297)
231 3kl4_A SRP54, signal recogniti 97.8 1.2E-05 4.1E-10 66.8 3.9 90 64-165 180-277 (433)
232 2rcn_A Probable GTPase ENGC; Y 97.8 8.3E-05 2.8E-09 60.3 8.5 84 84-171 127-212 (358)
233 1bif_A 6-phosphofructo-2-kinas 97.8 1.1E-06 3.7E-11 74.2 -2.8 110 13-127 37-156 (469)
234 3q5d_A Atlastin-1; G protein, 97.7 4.8E-05 1.6E-09 63.5 6.0 26 12-37 64-89 (447)
235 1ye8_A Protein THEP1, hypothet 97.3 0.00012 4.2E-09 53.4 3.4 22 16-37 1-22 (178)
236 1kgd_A CASK, peripheral plasma 97.2 0.00017 5.9E-09 52.6 3.2 22 16-37 6-27 (180)
237 1lvg_A Guanylate kinase, GMP k 97.2 0.00019 6.6E-09 53.2 3.2 22 16-37 5-26 (198)
238 3a00_A Guanylate kinase, GMP k 97.1 0.0003 1E-08 51.6 3.1 20 18-37 4-23 (186)
239 3tr0_A Guanylate kinase, GMP k 97.1 0.00032 1.1E-08 51.9 3.2 22 17-38 9-30 (205)
240 1znw_A Guanylate kinase, GMP k 97.0 0.00034 1.2E-08 52.1 3.1 22 16-37 21-42 (207)
241 1s96_A Guanylate kinase, GMP k 97.0 0.00037 1.3E-08 52.6 3.2 23 16-38 17-39 (219)
242 1z6g_A Guanylate kinase; struc 97.0 0.00038 1.3E-08 52.4 3.1 23 15-37 23-45 (218)
243 3ney_A 55 kDa erythrocyte memb 97.0 0.0004 1.4E-08 51.5 3.2 24 14-37 18-41 (197)
244 1t9h_A YLOQ, probable GTPase E 97.0 0.00025 8.6E-09 56.3 2.1 24 15-38 173-196 (307)
245 1ex7_A Guanylate kinase; subst 97.0 0.00043 1.5E-08 50.8 3.2 20 18-37 4-23 (186)
246 1zp6_A Hypothetical protein AT 97.0 0.00039 1.3E-08 50.9 2.9 23 16-38 10-32 (191)
247 4gp7_A Metallophosphoesterase; 97.0 0.00045 1.5E-08 49.9 3.1 20 17-36 11-30 (171)
248 2xxa_A Signal recognition part 97.0 0.0045 1.5E-07 51.5 9.4 82 64-156 184-272 (433)
249 3t61_A Gluconokinase; PSI-biol 97.0 0.0004 1.4E-08 51.4 2.8 22 16-37 19-40 (202)
250 3c8u_A Fructokinase; YP_612366 96.9 0.00049 1.7E-08 51.3 3.3 26 12-37 19-44 (208)
251 3tau_A Guanylate kinase, GMP k 96.9 0.00051 1.7E-08 51.3 3.2 23 16-38 9-31 (208)
252 1htw_A HI0065; nucleotide-bind 96.9 0.0006 2E-08 48.7 3.1 23 17-39 35-57 (158)
253 3tif_A Uncharacterized ABC tra 96.9 0.00054 1.9E-08 52.3 3.1 22 17-38 33-54 (235)
254 1cke_A CK, MSSA, protein (cyti 96.9 0.00068 2.3E-08 51.0 3.4 22 16-37 6-27 (227)
255 2qor_A Guanylate kinase; phosp 96.8 0.00072 2.5E-08 50.2 3.2 23 15-37 12-34 (204)
256 1kag_A SKI, shikimate kinase I 96.8 0.00076 2.6E-08 48.5 3.1 22 16-37 5-26 (173)
257 3asz_A Uridine kinase; cytidin 96.8 0.00079 2.7E-08 50.1 3.2 24 14-37 5-28 (211)
258 2bdt_A BH3686; alpha-beta prot 96.8 0.00074 2.5E-08 49.4 3.0 21 17-37 4-24 (189)
259 2pcj_A ABC transporter, lipopr 96.8 0.00068 2.3E-08 51.3 2.8 22 17-38 32-53 (224)
260 2onk_A Molybdate/tungstate ABC 96.8 0.0008 2.7E-08 51.5 3.2 22 17-38 26-47 (240)
261 2j41_A Guanylate kinase; GMP, 96.8 0.00079 2.7E-08 49.8 3.1 25 15-39 6-30 (207)
262 3lw7_A Adenylate kinase relate 96.8 0.00089 3.1E-08 47.9 3.3 20 16-35 2-21 (179)
263 2bbw_A Adenylate kinase 4, AK4 96.7 0.00091 3.1E-08 51.2 3.4 22 15-36 27-48 (246)
264 3kb2_A SPBC2 prophage-derived 96.7 0.00091 3.1E-08 47.9 3.2 20 17-36 3-22 (173)
265 2rcn_A Probable GTPase ENGC; Y 96.7 0.00088 3E-08 54.3 3.4 23 17-39 217-239 (358)
266 1b0u_A Histidine permease; ABC 96.7 0.00084 2.9E-08 52.1 3.1 22 17-38 34-55 (262)
267 3gfo_A Cobalt import ATP-bindi 96.7 0.00086 2.9E-08 52.4 3.1 22 17-38 36-57 (275)
268 2yvu_A Probable adenylyl-sulfa 96.7 0.0013 4.6E-08 47.9 4.0 31 7-37 5-35 (186)
269 3fb4_A Adenylate kinase; psych 96.7 0.00094 3.2E-08 49.9 3.2 21 16-36 1-21 (216)
270 1sgw_A Putative ABC transporte 96.7 0.00092 3.1E-08 50.2 3.1 22 17-38 37-58 (214)
271 4eun_A Thermoresistant glucoki 96.7 0.00096 3.3E-08 49.4 3.2 23 15-37 29-51 (200)
272 2i3b_A HCR-ntpase, human cance 96.7 0.00091 3.1E-08 49.2 3.0 21 17-37 3-23 (189)
273 3dl0_A Adenylate kinase; phosp 96.7 0.00099 3.4E-08 49.8 3.2 21 16-36 1-21 (216)
274 2cbz_A Multidrug resistance-as 96.7 0.001 3.5E-08 50.8 3.3 22 17-38 33-54 (237)
275 2cdn_A Adenylate kinase; phosp 96.7 0.0012 4.2E-08 48.7 3.6 26 12-37 17-42 (201)
276 1g6h_A High-affinity branched- 96.7 0.00094 3.2E-08 51.6 3.1 22 17-38 35-56 (257)
277 1mv5_A LMRA, multidrug resista 96.7 0.0011 3.7E-08 50.8 3.3 22 17-38 30-51 (243)
278 1ly1_A Polynucleotide kinase; 96.7 0.001 3.5E-08 48.0 3.0 22 16-37 3-24 (181)
279 2ff7_A Alpha-hemolysin translo 96.7 0.0011 3.7E-08 51.0 3.3 22 17-38 37-58 (247)
280 2olj_A Amino acid ABC transpor 96.7 0.001 3.5E-08 51.6 3.1 22 17-38 52-73 (263)
281 4g1u_C Hemin import ATP-bindin 96.7 0.0013 4.6E-08 51.0 3.8 22 17-38 39-60 (266)
282 2pze_A Cystic fibrosis transme 96.6 0.0012 4E-08 50.2 3.3 22 17-38 36-57 (229)
283 1knq_A Gluconate kinase; ALFA/ 96.6 0.0014 5E-08 47.1 3.7 23 15-37 8-30 (175)
284 2eyu_A Twitching motility prot 96.6 0.0011 3.6E-08 51.5 3.1 23 15-37 25-47 (261)
285 1ji0_A ABC transporter; ATP bi 96.6 0.0011 3.7E-08 50.7 3.1 22 17-38 34-55 (240)
286 2qi9_C Vitamin B12 import ATP- 96.6 0.0011 3.8E-08 51.0 3.1 22 17-38 28-49 (249)
287 2v9p_A Replication protein E1; 96.6 0.0012 4E-08 52.3 3.3 22 16-37 127-148 (305)
288 3ec2_A DNA replication protein 96.6 0.0011 3.7E-08 48.1 2.9 23 15-37 38-60 (180)
289 1aky_A Adenylate kinase; ATP:A 96.6 0.0012 4.2E-08 49.5 3.3 23 14-36 3-25 (220)
290 1vpl_A ABC transporter, ATP-bi 96.6 0.0011 3.9E-08 51.2 3.1 22 17-38 43-64 (256)
291 2d2e_A SUFC protein; ABC-ATPas 96.6 0.0012 4E-08 50.8 3.2 22 17-38 31-52 (250)
292 3vaa_A Shikimate kinase, SK; s 96.6 0.0013 4.6E-08 48.5 3.3 22 15-36 25-46 (199)
293 3sr0_A Adenylate kinase; phosp 96.6 0.0014 4.7E-08 49.0 3.3 21 16-36 1-21 (206)
294 2ghi_A Transport protein; mult 96.6 0.0013 4.4E-08 50.9 3.3 22 17-38 48-69 (260)
295 2zu0_C Probable ATP-dependent 96.6 0.0013 4.3E-08 51.2 3.2 22 17-38 48-69 (267)
296 2ehv_A Hypothetical protein PH 96.6 0.0013 4.3E-08 50.1 3.2 21 16-36 31-51 (251)
297 2ihy_A ABC transporter, ATP-bi 96.6 0.0014 4.7E-08 51.4 3.3 22 17-38 49-70 (279)
298 1u0l_A Probable GTPase ENGC; p 96.6 0.0014 5E-08 51.8 3.5 23 17-39 171-193 (301)
299 3cm0_A Adenylate kinase; ATP-b 96.6 0.0017 5.7E-08 47.2 3.6 22 15-36 4-25 (186)
300 1qhx_A CPT, protein (chloramph 96.6 0.0013 4.5E-08 47.4 3.0 22 16-37 4-25 (178)
301 2yv5_A YJEQ protein; hydrolase 96.6 0.0012 4.2E-08 52.2 3.1 21 16-36 166-186 (302)
302 1np6_A Molybdopterin-guanine d 96.6 0.0014 4.8E-08 47.5 3.2 22 16-37 7-28 (174)
303 2jaq_A Deoxyguanosine kinase; 96.5 0.0015 5E-08 48.1 3.3 21 17-37 2-22 (205)
304 3b85_A Phosphate starvation-in 96.5 0.001 3.5E-08 49.8 2.4 22 17-38 24-45 (208)
305 3aez_A Pantothenate kinase; tr 96.5 0.0021 7.1E-08 51.2 4.3 26 12-37 87-112 (312)
306 2ixe_A Antigen peptide transpo 96.5 0.0014 4.9E-08 51.0 3.3 22 17-38 47-68 (271)
307 2nq2_C Hypothetical ABC transp 96.5 0.0013 4.5E-08 50.7 3.1 22 17-38 33-54 (253)
308 2if2_A Dephospho-COA kinase; a 96.5 0.0014 4.8E-08 48.4 3.1 22 16-37 2-23 (204)
309 3uc9_A Increased recombination 96.5 0.0015 5E-08 49.3 3.1 135 13-157 27-168 (233)
310 3lnc_A Guanylate kinase, GMP k 96.5 0.00084 2.9E-08 50.8 1.8 23 16-38 28-51 (231)
311 1jjv_A Dephospho-COA kinase; P 96.5 0.0017 5.7E-08 48.1 3.4 22 16-37 3-24 (206)
312 2yz2_A Putative ABC transporte 96.5 0.0014 4.8E-08 50.9 3.1 22 17-38 35-56 (266)
313 1kht_A Adenylate kinase; phosp 96.5 0.0017 5.7E-08 47.3 3.3 21 16-36 4-24 (192)
314 3tlx_A Adenylate kinase 2; str 96.5 0.0019 6.4E-08 49.4 3.7 24 13-36 27-50 (243)
315 2rhm_A Putative kinase; P-loop 96.5 0.0016 5.6E-08 47.5 3.3 23 15-37 5-27 (193)
316 2qt1_A Nicotinamide riboside k 96.5 0.0021 7.2E-08 47.6 3.8 26 13-38 19-44 (207)
317 1y63_A LMAJ004144AAA protein; 96.5 0.0019 6.6E-08 47.0 3.5 24 14-37 9-32 (184)
318 3trf_A Shikimate kinase, SK; a 96.5 0.0018 6.1E-08 47.0 3.2 21 16-36 6-26 (185)
319 1nks_A Adenylate kinase; therm 96.5 0.0017 5.9E-08 47.3 3.2 21 17-37 3-23 (194)
320 4ido_A Atlastin-1; GTPase, GTP 96.5 0.0055 1.9E-07 51.0 6.4 65 12-76 64-152 (457)
321 4a74_A DNA repair and recombin 96.4 0.0015 5.2E-08 49.0 2.8 21 17-37 27-47 (231)
322 3uie_A Adenylyl-sulfate kinase 96.4 0.0021 7.2E-08 47.5 3.5 24 14-37 24-47 (200)
323 1e4v_A Adenylate kinase; trans 96.4 0.0016 5.6E-08 48.6 2.9 21 16-36 1-21 (214)
324 2jeo_A Uridine-cytidine kinase 96.4 0.0021 7.1E-08 49.1 3.6 25 13-37 23-47 (245)
325 2pjz_A Hypothetical protein ST 96.4 0.002 7E-08 49.9 3.5 23 17-39 32-54 (263)
326 3co5_A Putative two-component 96.4 0.0032 1.1E-07 43.9 4.2 23 15-37 27-49 (143)
327 1gvn_B Zeta; postsegregational 96.4 0.0022 7.5E-08 50.4 3.6 27 11-37 29-55 (287)
328 3nh6_A ATP-binding cassette SU 96.4 0.0014 4.7E-08 52.1 2.4 21 17-37 82-102 (306)
329 2f1r_A Molybdopterin-guanine d 96.4 0.001 3.4E-08 48.2 1.5 21 17-37 4-24 (171)
330 1lw7_A Transcriptional regulat 96.4 0.0018 6.1E-08 52.6 3.1 24 15-38 170-193 (365)
331 1tev_A UMP-CMP kinase; ploop, 96.4 0.0023 7.9E-08 46.6 3.5 22 15-36 3-24 (196)
332 3tqc_A Pantothenate kinase; bi 96.4 0.0026 9E-08 50.7 4.0 25 12-36 89-113 (321)
333 2plr_A DTMP kinase, probable t 96.4 0.0023 7.9E-08 47.4 3.5 23 15-37 4-26 (213)
334 2pt5_A Shikimate kinase, SK; a 96.3 0.0025 8.5E-08 45.4 3.3 22 16-37 1-22 (168)
335 1via_A Shikimate kinase; struc 96.3 0.0021 7E-08 46.4 2.9 20 17-36 6-25 (175)
336 1odf_A YGR205W, hypothetical 3 96.3 0.003 1E-07 49.7 4.0 25 12-36 28-52 (290)
337 1zd8_A GTP:AMP phosphotransfer 96.3 0.0021 7.2E-08 48.4 3.0 22 15-36 7-28 (227)
338 3tui_C Methionine import ATP-b 96.3 0.0022 7.7E-08 52.0 3.2 22 17-38 56-77 (366)
339 2p5t_B PEZT; postsegregational 96.3 0.0019 6.6E-08 49.6 2.7 27 11-37 28-54 (253)
340 3iij_A Coilin-interacting nucl 96.3 0.0027 9.1E-08 45.9 3.3 22 15-36 11-32 (180)
341 2v54_A DTMP kinase, thymidylat 96.3 0.0027 9.2E-08 46.8 3.4 24 15-38 4-27 (204)
342 2bbs_A Cystic fibrosis transme 96.3 0.0022 7.5E-08 50.5 3.0 22 17-38 66-87 (290)
343 3jvv_A Twitching mobility prot 96.3 0.0025 8.6E-08 51.6 3.4 21 17-37 125-145 (356)
344 1z47_A CYSA, putative ABC-tran 96.3 0.0024 8.1E-08 51.7 3.2 22 17-38 43-64 (355)
345 2xb4_A Adenylate kinase; ATP-b 96.3 0.0026 9E-08 47.9 3.3 21 16-36 1-21 (223)
346 3fvq_A Fe(3+) IONS import ATP- 96.3 0.0024 8.3E-08 51.7 3.2 23 17-39 32-54 (359)
347 1uf9_A TT1252 protein; P-loop, 96.3 0.0027 9.3E-08 46.7 3.3 26 13-38 6-31 (203)
348 2x8a_A Nuclear valosin-contain 96.3 0.0024 8.4E-08 49.7 3.1 20 18-37 47-66 (274)
349 1ukz_A Uridylate kinase; trans 96.3 0.0037 1.3E-07 46.1 4.0 24 13-36 13-36 (203)
350 2yyz_A Sugar ABC transporter, 96.2 0.0025 8.5E-08 51.7 3.2 22 17-38 31-52 (359)
351 3rlf_A Maltose/maltodextrin im 96.2 0.0026 8.8E-08 52.0 3.2 23 17-39 31-53 (381)
352 2it1_A 362AA long hypothetical 96.2 0.0026 8.9E-08 51.6 3.2 22 17-38 31-52 (362)
353 1jbk_A CLPB protein; beta barr 96.2 0.0031 1.1E-07 45.5 3.4 22 16-37 44-65 (195)
354 1sq5_A Pantothenate kinase; P- 96.2 0.0032 1.1E-07 49.9 3.7 25 13-37 78-102 (308)
355 1rj9_A FTSY, signal recognitio 96.2 0.0027 9.3E-08 50.3 3.1 85 65-159 186-282 (304)
356 1zak_A Adenylate kinase; ATP:A 96.2 0.0023 7.9E-08 48.0 2.6 22 15-36 5-26 (222)
357 1ixz_A ATP-dependent metallopr 96.2 0.0029 9.9E-08 48.5 3.2 20 18-37 52-71 (254)
358 1rz3_A Hypothetical protein rb 96.2 0.0036 1.2E-07 46.3 3.6 25 13-37 20-44 (201)
359 1v43_A Sugar-binding transport 96.2 0.0028 9.7E-08 51.6 3.2 22 17-38 39-60 (372)
360 1g29_1 MALK, maltose transport 96.2 0.0028 9.5E-08 51.7 3.2 23 17-39 31-53 (372)
361 4e22_A Cytidylate kinase; P-lo 96.2 0.003 1E-07 48.6 3.2 22 15-36 27-48 (252)
362 2c95_A Adenylate kinase 1; tra 96.2 0.0028 9.5E-08 46.3 2.9 22 15-36 9-30 (196)
363 2kjq_A DNAA-related protein; s 96.2 0.002 7E-08 45.4 2.0 22 16-37 37-58 (149)
364 2vp4_A Deoxynucleoside kinase; 96.2 0.0035 1.2E-07 47.4 3.4 27 12-38 17-43 (230)
365 1nn5_A Similar to deoxythymidy 96.1 0.003 1E-07 46.8 3.1 23 15-37 9-31 (215)
366 1ak2_A Adenylate kinase isoenz 96.1 0.0035 1.2E-07 47.5 3.4 24 13-36 14-37 (233)
367 2ewv_A Twitching motility prot 96.1 0.0032 1.1E-07 51.4 3.3 22 16-37 137-158 (372)
368 3b9q_A Chloroplast SRP recepto 96.1 0.0031 1.1E-07 49.9 3.2 23 14-36 99-121 (302)
369 2wwf_A Thymidilate kinase, put 96.1 0.0037 1.3E-07 46.3 3.4 24 14-37 9-32 (212)
370 1xjc_A MOBB protein homolog; s 96.1 0.004 1.4E-07 44.9 3.4 22 16-37 5-26 (169)
371 2pbr_A DTMP kinase, thymidylat 96.1 0.0035 1.2E-07 45.6 3.2 21 17-37 2-22 (195)
372 2gza_A Type IV secretion syste 96.1 0.0027 9.4E-08 51.5 2.8 23 16-38 176-198 (361)
373 1vht_A Dephospho-COA kinase; s 96.1 0.004 1.4E-07 46.5 3.6 23 15-37 4-26 (218)
374 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.0028 9.5E-08 50.8 2.8 22 17-38 173-194 (330)
375 3d31_A Sulfate/molybdate ABC t 96.1 0.0024 8.1E-08 51.6 2.4 22 17-38 28-49 (348)
376 1qf9_A UMP/CMP kinase, protein 96.1 0.0041 1.4E-07 45.2 3.5 21 16-36 7-27 (194)
377 2ze6_A Isopentenyl transferase 96.1 0.0034 1.2E-07 48.3 3.0 20 17-36 3-22 (253)
378 2z0h_A DTMP kinase, thymidylat 96.1 0.0039 1.3E-07 45.6 3.2 21 17-37 2-22 (197)
379 3be4_A Adenylate kinase; malar 96.1 0.0035 1.2E-07 46.9 3.0 22 15-36 5-26 (217)
380 1gtv_A TMK, thymidylate kinase 96.0 0.0015 5E-08 48.6 0.8 21 17-37 2-22 (214)
381 2bwj_A Adenylate kinase 5; pho 96.0 0.0032 1.1E-07 46.1 2.7 23 15-37 12-34 (199)
382 1p9r_A General secretion pathw 96.0 0.0036 1.2E-07 51.8 3.1 22 17-38 169-190 (418)
383 1e6c_A Shikimate kinase; phosp 96.0 0.0043 1.5E-07 44.4 3.1 21 17-37 4-24 (173)
384 3r20_A Cytidylate kinase; stru 96.0 0.0044 1.5E-07 47.1 3.3 23 14-36 8-30 (233)
385 1iy2_A ATP-dependent metallopr 96.0 0.0041 1.4E-07 48.4 3.2 20 18-37 76-95 (278)
386 3e70_C DPA, signal recognition 96.0 0.0054 1.8E-07 49.1 3.8 90 65-166 213-308 (328)
387 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.0042 1.5E-07 46.5 3.1 21 17-37 25-45 (235)
388 2pez_A Bifunctional 3'-phospho 96.0 0.0052 1.8E-07 44.4 3.5 24 14-37 4-27 (179)
389 1in4_A RUVB, holliday junction 96.0 0.0041 1.4E-07 49.8 3.1 21 17-37 53-73 (334)
390 3gd7_A Fusion complex of cysti 95.9 0.0037 1.3E-07 51.2 2.9 21 17-37 49-69 (390)
391 1zuh_A Shikimate kinase; alpha 95.9 0.0051 1.7E-07 43.9 3.3 20 17-36 9-28 (168)
392 2p65_A Hypothetical protein PF 95.9 0.0035 1.2E-07 45.1 2.5 23 15-37 43-65 (187)
393 2vli_A Antibiotic resistance p 95.9 0.0029 1E-07 45.7 2.0 22 15-36 5-26 (183)
394 1oxx_K GLCV, glucose, ABC tran 95.9 0.0023 8E-08 51.8 1.6 22 17-38 33-54 (353)
395 3kta_A Chromosome segregation 95.9 0.0043 1.5E-07 44.9 2.9 21 17-37 28-48 (182)
396 2oap_1 GSPE-2, type II secreti 95.9 0.0036 1.2E-07 53.2 2.7 23 16-38 261-283 (511)
397 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.0055 1.9E-07 47.3 3.5 22 16-37 5-26 (260)
398 1uj2_A Uridine-cytidine kinase 95.9 0.0054 1.9E-07 47.0 3.4 25 13-37 20-44 (252)
399 2iyv_A Shikimate kinase, SK; t 95.9 0.0049 1.7E-07 44.7 3.0 20 17-36 4-23 (184)
400 2og2_A Putative signal recogni 95.8 0.0051 1.7E-07 49.9 3.2 23 14-36 156-178 (359)
401 2obl_A ESCN; ATPase, hydrolase 95.8 0.0052 1.8E-07 49.6 3.1 23 17-39 73-95 (347)
402 3bos_A Putative DNA replicatio 95.8 0.0058 2E-07 45.9 3.2 23 15-37 52-74 (242)
403 3umf_A Adenylate kinase; rossm 95.8 0.0084 2.9E-07 45.0 4.0 20 17-36 31-50 (217)
404 1q3t_A Cytidylate kinase; nucl 95.8 0.0062 2.1E-07 46.2 3.3 28 10-37 11-38 (236)
405 2f6r_A COA synthase, bifunctio 95.8 0.0059 2E-07 47.7 3.2 24 13-36 73-96 (281)
406 2grj_A Dephospho-COA kinase; T 95.8 0.0073 2.5E-07 44.4 3.6 25 13-37 10-34 (192)
407 1lv7_A FTSH; alpha/beta domain 95.8 0.0056 1.9E-07 46.9 3.1 22 16-37 46-67 (257)
408 3nwj_A ATSK2; P loop, shikimat 95.7 0.0053 1.8E-07 47.2 2.8 21 16-36 49-69 (250)
409 2npi_A Protein CLP1; CLP1-PCF1 95.7 0.0046 1.6E-07 51.8 2.6 23 16-38 139-161 (460)
410 2yhs_A FTSY, cell division pro 95.7 0.0058 2E-07 51.5 3.2 23 14-36 292-314 (503)
411 2w58_A DNAI, primosome compone 95.7 0.007 2.4E-07 44.5 3.4 22 16-37 55-76 (202)
412 4eaq_A DTMP kinase, thymidylat 95.7 0.0091 3.1E-07 45.2 4.0 24 14-37 25-48 (229)
413 3t15_A Ribulose bisphosphate c 95.7 0.0078 2.7E-07 47.3 3.7 27 11-37 32-58 (293)
414 1cr0_A DNA primase/helicase; R 95.7 0.0056 1.9E-07 48.1 2.8 22 17-38 37-58 (296)
415 1n0w_A DNA repair protein RAD5 95.7 0.0067 2.3E-07 45.8 3.2 22 17-38 26-47 (243)
416 1m7g_A Adenylylsulfate kinase; 95.7 0.0081 2.8E-07 44.7 3.5 24 14-37 24-47 (211)
417 1nij_A Hypothetical protein YJ 95.6 0.0043 1.5E-07 49.5 2.0 22 17-38 6-27 (318)
418 2cvh_A DNA repair and recombin 95.6 0.0069 2.4E-07 45.0 3.1 21 17-37 22-42 (220)
419 1f2t_A RAD50 ABC-ATPase; DNA d 95.6 0.0071 2.4E-07 42.5 2.9 19 18-36 26-44 (149)
420 4dzz_A Plasmid partitioning pr 95.6 0.018 6E-07 42.3 5.1 85 64-155 76-162 (206)
421 3n70_A Transport activator; si 95.5 0.0076 2.6E-07 42.0 2.8 24 15-38 24-47 (145)
422 1yqt_A RNAse L inhibitor; ATP- 95.5 0.01 3.5E-07 50.8 4.2 24 16-39 48-71 (538)
423 3euj_A Chromosome partition pr 95.5 0.0079 2.7E-07 50.6 3.2 21 16-36 30-50 (483)
424 3syl_A Protein CBBX; photosynt 95.5 0.01 3.6E-07 46.6 3.8 24 13-36 65-88 (309)
425 1tue_A Replication protein E1; 95.5 0.0074 2.5E-07 44.9 2.6 22 16-37 59-80 (212)
426 1ltq_A Polynucleotide kinase; 95.5 0.0082 2.8E-07 47.1 3.0 22 16-37 3-24 (301)
427 1svm_A Large T antigen; AAA+ f 95.4 0.0084 2.9E-07 48.9 3.1 23 15-37 169-191 (377)
428 2dpy_A FLII, flagellum-specifi 95.4 0.0082 2.8E-07 50.0 3.1 22 17-38 159-180 (438)
429 3ozx_A RNAse L inhibitor; ATP 95.4 0.011 3.6E-07 50.7 3.8 27 13-39 23-49 (538)
430 1njg_A DNA polymerase III subu 95.4 0.0094 3.2E-07 44.5 3.1 20 17-36 47-66 (250)
431 3j16_B RLI1P; ribosome recycli 95.4 0.011 3.9E-07 51.2 3.9 23 17-39 105-127 (608)
432 2chg_A Replication factor C sm 95.4 0.0099 3.4E-07 43.8 3.1 21 17-37 40-60 (226)
433 3h4m_A Proteasome-activating n 95.4 0.0099 3.4E-07 46.2 3.2 23 15-37 51-73 (285)
434 3b9p_A CG5977-PA, isoform A; A 95.3 0.01 3.5E-07 46.4 3.2 23 15-37 54-76 (297)
435 3b60_A Lipid A export ATP-bind 95.3 0.0089 3.1E-07 51.7 3.1 22 17-38 371-392 (582)
436 2qz4_A Paraplegin; AAA+, SPG7, 95.3 0.011 3.8E-07 45.2 3.3 24 14-37 38-61 (262)
437 3b5x_A Lipid A export ATP-bind 95.2 0.013 4.6E-07 50.6 3.9 22 17-38 371-392 (582)
438 3gmt_A Adenylate kinase; ssgci 95.2 0.013 4.5E-07 44.3 3.4 23 14-36 7-29 (230)
439 3bk7_A ABC transporter ATP-bin 95.2 0.014 4.9E-07 50.6 4.0 24 16-39 118-141 (607)
440 3cf0_A Transitional endoplasmi 95.2 0.011 3.7E-07 46.6 2.9 23 15-37 49-71 (301)
441 3qf7_A RAD50; ABC-ATPase, ATPa 95.2 0.012 3.9E-07 47.9 3.2 21 15-36 24-44 (365)
442 1d2n_A N-ethylmaleimide-sensit 95.1 0.018 6.2E-07 44.5 4.0 25 13-37 62-86 (272)
443 1l8q_A Chromosomal replication 95.1 0.012 4.2E-07 46.7 3.1 22 16-37 38-59 (324)
444 1nlf_A Regulatory protein REPA 95.1 0.011 3.9E-07 45.9 2.8 21 17-37 32-52 (279)
445 4fcw_A Chaperone protein CLPB; 95.0 0.019 6.5E-07 45.1 4.0 23 15-37 47-69 (311)
446 3ake_A Cytidylate kinase; CMP 95.0 0.016 5.4E-07 42.7 3.2 21 17-37 4-24 (208)
447 2qmh_A HPR kinase/phosphorylas 95.0 0.013 4.4E-07 43.3 2.6 23 16-38 35-57 (205)
448 3ozx_A RNAse L inhibitor; ATP 95.0 0.017 5.9E-07 49.4 3.8 23 17-39 296-318 (538)
449 3zvl_A Bifunctional polynucleo 95.0 0.014 4.7E-07 48.3 3.1 24 14-37 257-280 (416)
450 4a82_A Cystic fibrosis transme 95.0 0.0087 3E-07 51.7 1.9 21 17-37 369-389 (578)
451 2yl4_A ATP-binding cassette SU 95.0 0.0093 3.2E-07 51.7 2.1 22 17-38 372-393 (595)
452 1yqt_A RNAse L inhibitor; ATP- 95.0 0.02 6.8E-07 49.0 4.1 23 17-39 314-336 (538)
453 3bk7_A ABC transporter ATP-bin 95.0 0.019 6.7E-07 49.8 4.1 23 17-39 384-406 (607)
454 2px0_A Flagellar biosynthesis 94.9 0.014 4.8E-07 46.0 2.9 85 64-158 183-273 (296)
455 3qf4_B Uncharacterized ABC tra 94.9 0.01 3.5E-07 51.5 2.3 22 17-38 383-404 (598)
456 2qby_A CDC6 homolog 1, cell di 94.9 0.014 4.7E-07 47.1 2.9 23 15-37 45-67 (386)
457 1ofh_A ATP-dependent HSL prote 94.9 0.015 5.2E-07 45.5 3.0 23 15-37 50-72 (310)
458 1fnn_A CDC6P, cell division co 94.9 0.017 5.8E-07 46.8 3.4 22 17-38 46-67 (389)
459 3crm_A TRNA delta(2)-isopenten 94.9 0.019 6.6E-07 45.7 3.6 21 16-36 6-26 (323)
460 2dr3_A UPF0273 protein PH0284; 94.9 0.015 5.1E-07 43.9 2.9 20 17-36 25-44 (247)
461 1sxj_E Activator 1 40 kDa subu 94.9 0.013 4.4E-07 47.0 2.6 20 18-37 39-58 (354)
462 3qf4_A ABC transporter, ATP-bi 94.8 0.012 4E-07 51.0 2.4 21 17-37 371-391 (587)
463 1vma_A Cell division protein F 94.8 0.018 6E-07 45.7 3.0 86 64-159 187-284 (306)
464 1sxj_C Activator 1 40 kDa subu 94.8 0.017 5.9E-07 46.2 3.1 22 17-38 48-69 (340)
465 3eie_A Vacuolar protein sortin 94.7 0.019 6.3E-07 45.7 3.2 24 14-37 50-73 (322)
466 3d3q_A TRNA delta(2)-isopenten 94.7 0.018 6.1E-07 46.2 3.0 21 16-36 8-28 (340)
467 3j16_B RLI1P; ribosome recycli 94.7 0.023 7.8E-07 49.3 3.9 22 18-39 381-402 (608)
468 1xwi_A SKD1 protein; VPS4B, AA 94.7 0.019 6.5E-07 45.7 3.2 25 14-38 44-68 (322)
469 3a8t_A Adenylate isopentenyltr 94.6 0.019 6.6E-07 46.0 3.0 22 16-37 41-62 (339)
470 3qks_A DNA double-strand break 94.6 0.022 7.5E-07 42.2 3.2 19 18-36 26-44 (203)
471 2qgz_A Helicase loader, putati 94.6 0.021 7.2E-07 45.2 3.2 23 15-37 152-174 (308)
472 1pzn_A RAD51, DNA repair and r 94.6 0.018 6E-07 46.5 2.8 23 16-38 132-154 (349)
473 1a7j_A Phosphoribulokinase; tr 94.6 0.0086 2.9E-07 47.0 0.9 24 14-37 4-27 (290)
474 4b4t_K 26S protease regulatory 94.6 0.019 6.6E-07 47.6 3.0 23 15-37 206-228 (428)
475 2ga8_A Hypothetical 39.9 kDa p 94.6 0.027 9.2E-07 45.5 3.8 23 14-36 23-45 (359)
476 3exa_A TRNA delta(2)-isopenten 94.6 0.021 7.1E-07 45.3 3.1 21 17-37 5-25 (322)
477 1p5z_B DCK, deoxycytidine kina 94.5 0.015 5E-07 44.9 2.1 25 13-37 22-46 (263)
478 2h92_A Cytidylate kinase; ross 94.5 0.022 7.4E-07 42.4 2.8 22 16-37 4-25 (219)
479 2r62_A Cell division protease 94.4 0.0099 3.4E-07 45.8 0.9 21 17-37 46-66 (268)
480 4b4t_L 26S protease subunit RP 94.4 0.023 7.7E-07 47.3 3.1 25 13-37 213-237 (437)
481 2v1u_A Cell division control p 94.4 0.02 6.7E-07 46.3 2.7 23 15-37 44-66 (387)
482 1sxj_D Activator 1 41 kDa subu 94.4 0.022 7.7E-07 45.4 3.0 21 17-37 60-80 (353)
483 3uk6_A RUVB-like 2; hexameric 94.4 0.022 7.5E-07 45.9 2.9 22 16-37 71-92 (368)
484 3pxg_A Negative regulator of g 94.4 0.02 6.8E-07 48.1 2.8 21 16-36 202-222 (468)
485 3tqf_A HPR(Ser) kinase; transf 94.4 0.028 9.6E-07 40.5 3.1 36 152-187 128-163 (181)
486 2qen_A Walker-type ATPase; unk 94.4 0.024 8.3E-07 45.0 3.2 22 17-38 33-54 (350)
487 2ocp_A DGK, deoxyguanosine kin 94.4 0.027 9.1E-07 42.7 3.2 22 16-37 3-24 (241)
488 3ld9_A DTMP kinase, thymidylat 94.4 0.032 1.1E-06 42.0 3.5 30 7-36 13-42 (223)
489 1c9k_A COBU, adenosylcobinamid 94.3 0.025 8.4E-07 41.1 2.8 21 18-38 2-22 (180)
490 2iw3_A Elongation factor 3A; a 94.3 0.029 9.8E-07 51.3 3.7 24 17-40 463-486 (986)
491 4b4t_M 26S protease regulatory 94.3 0.028 9.6E-07 46.7 3.4 25 13-37 213-237 (434)
492 3cwq_A Para family chromosome 94.3 0.22 7.4E-06 36.8 8.0 85 64-155 68-153 (209)
493 3pfi_A Holliday junction ATP-d 94.3 0.025 8.4E-07 45.1 3.0 22 16-37 56-77 (338)
494 2bjv_A PSP operon transcriptio 94.3 0.026 9E-07 43.3 3.1 23 16-38 30-52 (265)
495 1tf7_A KAIC; homohexamer, hexa 94.3 0.022 7.5E-07 48.5 2.8 19 17-35 41-59 (525)
496 3m6a_A ATP-dependent protease 94.3 0.026 8.7E-07 48.4 3.2 23 15-37 108-130 (543)
497 1um8_A ATP-dependent CLP prote 94.3 0.024 8.1E-07 46.1 2.8 23 15-37 72-94 (376)
498 3foz_A TRNA delta(2)-isopenten 94.3 0.035 1.2E-06 43.9 3.7 21 16-36 11-31 (316)
499 2iw3_A Elongation factor 3A; a 94.3 0.017 5.8E-07 52.7 2.1 22 17-38 701-722 (986)
500 3d8b_A Fidgetin-like protein 1 94.3 0.028 9.6E-07 45.4 3.2 24 14-37 116-139 (357)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=9.9e-44 Score=271.95 Aligned_cols=171 Identities=35% Similarity=0.638 Sum_probs=147.7
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
.++.+++||+|+|++|||||||+++|..+.|...+.+|++.++..+.+..++..+.+.||||+|+++|..++..++++++
T Consensus 8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~ 87 (216)
T 4dkx_A 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSA 87 (216)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCS
T ss_pred CCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcccc
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
++++|||++++.+|+.+..|+..+.....+++|++||+||+|+.+.+++..+++++++..++++|+++||++|.||+++|
T Consensus 88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F 167 (216)
T 4dkx_A 88 AAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 167 (216)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHH
Confidence 99999999999999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 170 LELSQRMLEKA 180 (223)
Q Consensus 170 ~~i~~~~~~~~ 180 (223)
+.|++.+....
T Consensus 168 ~~i~~~i~~~~ 178 (216)
T 4dkx_A 168 RRVAAALPGME 178 (216)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHhhh
Confidence 99999886543
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=3.6e-36 Score=228.49 Aligned_cols=176 Identities=35% Similarity=0.654 Sum_probs=161.3
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
..++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 35778999999999999999999999998888888999999888888899988999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||++|.|++++|+
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887777899999999999988777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy8722 171 ELSQRMLEKAQEFDLA 186 (223)
Q Consensus 171 ~i~~~~~~~~~~~~~~ 186 (223)
+|.+.+.+........
T Consensus 164 ~l~~~i~~~~~~~~~~ 179 (206)
T 2bcg_Y 164 TMARQIKESMSQQNLN 179 (206)
T ss_dssp HHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHhhcccc
Confidence 9999998776555433
No 3
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-36 Score=230.70 Aligned_cols=177 Identities=33% Similarity=0.630 Sum_probs=148.8
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
..++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 34778999999999999999999999988888888899988888888889988999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++...+++++++||+++.|++++|+
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE 168 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887767899999999999987778888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy8722 171 ELSQRMLEKAQEFDLAK 187 (223)
Q Consensus 171 ~i~~~~~~~~~~~~~~~ 187 (223)
+|++.+.+.....+...
T Consensus 169 ~l~~~i~~~~~~~~~~~ 185 (223)
T 3cpj_B 169 ELINTIYQKVSKHQMDL 185 (223)
T ss_dssp HHHHHHTTCC-------
T ss_pred HHHHHHHHHhhhcccCc
Confidence 99999987766655443
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=2.4e-35 Score=223.60 Aligned_cols=177 Identities=29% Similarity=0.498 Sum_probs=151.6
Q ss_pred cccCCCCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccc
Q psy8722 3 ANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGP 82 (223)
Q Consensus 3 ~~~~~~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 82 (223)
...-....+..+.+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+.
T Consensus 2 ~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 80 (206)
T 2bov_A 2 AANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRD 80 (206)
T ss_dssp ---------CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHH
T ss_pred CcccccCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHH
Confidence 33444445567789999999999999999999998888777777777665 45567788888999999999999999999
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM 161 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (223)
.+++.+|++++|||++++.++..+..|+..+..... .++|+++|+||+|+...+.+..+++.+++..++++++++||++
T Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (206)
T 2bov_A 81 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKT 160 (206)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTT
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCC
Confidence 999999999999999999999999999999887653 5789999999999988778888999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~~ 180 (223)
|.|++++|++|++.+.++.
T Consensus 161 g~gi~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 161 RANVDKVFFDLMREIRARK 179 (206)
T ss_dssp CTTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcc
Confidence 9999999999999998764
No 5
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=5.8e-35 Score=217.65 Aligned_cols=171 Identities=40% Similarity=0.725 Sum_probs=129.2
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 46789999999999999999999998888878888999888888888899889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.+++..++++++++||+++.|++++|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998876678999999999999877788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 172 LSQRMLEKAQE 182 (223)
Q Consensus 172 i~~~~~~~~~~ 182 (223)
|.+.+.++..+
T Consensus 165 l~~~i~~~~~~ 175 (183)
T 2fu5_C 165 LARDIKAKMDK 175 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999876554
No 6
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=2.1e-34 Score=218.67 Aligned_cols=171 Identities=35% Similarity=0.612 Sum_probs=151.7
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 46789999999999999999999999888888888999988888888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCccccccCCHHHHHHHHH-HhCCcEEEecCCCCCCHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-SVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~ 166 (223)
|+|||++++.++..+..|+..+..... .+.|+++|+||+|+. .+.+..++..+++. ..+++++++||++|.|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999998877653 468999999999997 45567788888887 677899999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEKAQEF 183 (223)
Q Consensus 167 ~~~~~i~~~~~~~~~~~ 183 (223)
++|++|.+.+.+.....
T Consensus 164 ~l~~~l~~~~~~~~~~~ 180 (207)
T 1vg8_A 164 QAFQTIARNALKQETEV 180 (207)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999998765443
No 7
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-34 Score=218.05 Aligned_cols=171 Identities=37% Similarity=0.691 Sum_probs=158.1
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+.++.+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 35678999999999999999999999988888888999999988888899988999999999999999889999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|+
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 181 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL 181 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887777899999999999987778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 171 ELSQRMLEKAQ 181 (223)
Q Consensus 171 ~i~~~~~~~~~ 181 (223)
+|.+.+.++..
T Consensus 182 ~l~~~i~~~~~ 192 (201)
T 2ew1_A 182 DLACRLISEAR 192 (201)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999887643
No 8
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=3.8e-34 Score=215.37 Aligned_cols=173 Identities=34% Similarity=0.681 Sum_probs=159.8
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
..++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 34678999999999999999999999999888888999999988889999998999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++|+
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999888777899999999999988888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 171 ELSQRMLEKAQEF 183 (223)
Q Consensus 171 ~i~~~~~~~~~~~ 183 (223)
+|.+.+.++....
T Consensus 172 ~l~~~i~~~~~~~ 184 (196)
T 3tkl_A 172 TMAAEIKKRMGPG 184 (196)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHhccc
Confidence 9999998876544
No 9
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=4.9e-34 Score=214.35 Aligned_cols=171 Identities=35% Similarity=0.695 Sum_probs=153.5
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
...+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 96 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 96 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence 35789999999999999999999999988887778888888888888889988999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|+
T Consensus 97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFI 176 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887777899999999999987778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 171 ELSQRMLEKAQ 181 (223)
Q Consensus 171 ~i~~~~~~~~~ 181 (223)
+|++.+.++..
T Consensus 177 ~l~~~i~~~~~ 187 (191)
T 2a5j_A 177 NTAKEIYRKIQ 187 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987643
No 10
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=218.44 Aligned_cols=170 Identities=40% Similarity=0.693 Sum_probs=147.4
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
.+.++.+||+|+|++|+|||||+++|....+...+.+|.+.++....+.+++..+.+.+|||||++.+...+..+++++|
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN 103 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence 34577899999999999999999999988888888888888888888888988899999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIEEM 168 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~ 168 (223)
++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++..+++ +++++||+++.|++++
T Consensus 104 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 183 (201)
T 2hup_A 104 GAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEA 183 (201)
T ss_dssp EEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999999999887767899999999999988778888999999999999 9999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 169 FLELSQRMLEK 179 (223)
Q Consensus 169 ~~~i~~~~~~~ 179 (223)
|++|++.+.++
T Consensus 184 ~~~l~~~i~~~ 194 (201)
T 2hup_A 184 FLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 11
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1.3e-33 Score=211.67 Aligned_cols=169 Identities=38% Similarity=0.674 Sum_probs=155.7
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 46789999999999999999999999888888788888888888888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++|++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 178 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFER 178 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998876678999999999999887778888999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy8722 172 LSQRMLEKA 180 (223)
Q Consensus 172 i~~~~~~~~ 180 (223)
|.+.+.++.
T Consensus 179 l~~~i~~~~ 187 (189)
T 2gf9_A 179 LVDVICEKM 187 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987653
No 12
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=3.5e-34 Score=210.65 Aligned_cols=167 Identities=80% Similarity=1.260 Sum_probs=147.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 46789999999999999999999999888888889999888888888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
++|+|++++.++..+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999988876667999999999999887788889999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy8722 172 LSQRMLE 178 (223)
Q Consensus 172 i~~~~~~ 178 (223)
|.+.+.+
T Consensus 163 l~~~~~~ 169 (170)
T 1z08_A 163 LCKRMIE 169 (170)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988753
No 13
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=209.54 Aligned_cols=172 Identities=38% Similarity=0.694 Sum_probs=155.9
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 35688999999999999999999999988888888999999988888999988999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++++.++..+..|+..+.... ++.|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999999999999988765 4689999999999988888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 171 ELSQRMLEKAQEF 183 (223)
Q Consensus 171 ~i~~~~~~~~~~~ 183 (223)
+|.+.+.+...+.
T Consensus 164 ~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 164 CITELVLRAKKDN 176 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhh
Confidence 9999998876554
No 14
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=5.8e-34 Score=212.62 Aligned_cols=172 Identities=33% Similarity=0.643 Sum_probs=158.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 46789999999999999999999999888888888989888888888899889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|+|||++++.++..+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|++
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ 166 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999988877778999999999999877788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 172 LSQRMLEKAQEF 183 (223)
Q Consensus 172 i~~~~~~~~~~~ 183 (223)
+.+.+.++....
T Consensus 167 l~~~~~~~~~~~ 178 (186)
T 2bme_A 167 CARKILNKIESG 178 (186)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHhhhc
Confidence 999998765443
No 15
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=6.6e-34 Score=210.75 Aligned_cols=168 Identities=33% Similarity=0.679 Sum_probs=154.8
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
..++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 35788999999999999999999999888888788888888888888889888999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.+++..++++++++||+++.|++++|+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999888777899999999999987778888999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy8722 171 ELSQRMLE 178 (223)
Q Consensus 171 ~i~~~~~~ 178 (223)
+|++.+.+
T Consensus 171 ~l~~~i~~ 178 (179)
T 1z0f_A 171 EAAKKIYQ 178 (179)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhh
Confidence 99988754
No 16
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-33 Score=208.95 Aligned_cols=171 Identities=34% Similarity=0.652 Sum_probs=146.9
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMS 88 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (223)
...++.+||+++|++|+|||||+++|.+..+. ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 34578999999999999999999999987774 46678888888887778899889999999999999999999999999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHH
Q psy8722 89 NGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (223)
|++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998877678999999999999887788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 169 FLELSQRMLEKA 180 (223)
Q Consensus 169 ~~~i~~~~~~~~ 180 (223)
|++|.+.+.++.
T Consensus 165 ~~~l~~~~~~~~ 176 (180)
T 2g6b_A 165 FTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHh
Confidence 999999886543
No 17
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=9e-34 Score=210.61 Aligned_cols=171 Identities=40% Similarity=0.724 Sum_probs=153.9
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
....+.+||+++|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 34577899999999999999999999998888888888888888888888888899999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
++|+|||++++.+++.+..|+..+.....++.|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 166 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 99999999999999999999999988877789999999999998777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 170 LELSQRMLEKA 180 (223)
Q Consensus 170 ~~i~~~~~~~~ 180 (223)
++|.+.+.+..
T Consensus 167 ~~l~~~~~~~~ 177 (181)
T 2efe_B 167 YEIARRLPRVQ 177 (181)
T ss_dssp HHHHHTCC---
T ss_pred HHHHHHHHhcC
Confidence 99998776543
No 18
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=211.76 Aligned_cols=170 Identities=34% Similarity=0.597 Sum_probs=156.2
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 100 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG 100 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 35778999999999999999999999988888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|+
T Consensus 101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 180 (193)
T 2oil_A 101 ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE 180 (193)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999998877667899999999999987777888999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 171 ELSQRMLEKA 180 (223)
Q Consensus 171 ~i~~~~~~~~ 180 (223)
+|.+.+.++.
T Consensus 181 ~l~~~i~~~~ 190 (193)
T 2oil_A 181 TVLKEIFAKV 190 (193)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 19
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=2.6e-33 Score=212.19 Aligned_cols=172 Identities=36% Similarity=0.641 Sum_probs=157.9
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
..++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 35678999999999999999999999988888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++|+
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887667899999999999988778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 171 ELSQRMLEKAQE 182 (223)
Q Consensus 171 ~i~~~~~~~~~~ 182 (223)
+|.+.+.++..+
T Consensus 164 ~l~~~i~~~~~~ 175 (203)
T 1zbd_A 164 RLVDVICEKMSE 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999998876544
No 20
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.2e-34 Score=215.09 Aligned_cols=171 Identities=33% Similarity=0.653 Sum_probs=147.1
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 46789999999999999999999998888888888888888888888899889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|+|||++++.++..+..|+..+......++|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|++
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 181 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK 181 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998877778999999999999877778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 172 LSQRMLEKAQE 182 (223)
Q Consensus 172 i~~~~~~~~~~ 182 (223)
|.+.+.++...
T Consensus 182 l~~~i~~~~~~ 192 (200)
T 2o52_A 182 CARTILNKIDS 192 (200)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999876543
No 21
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7e-34 Score=213.73 Aligned_cols=175 Identities=46% Similarity=0.713 Sum_probs=153.4
Q ss_pred cCCCCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccc
Q psy8722 5 SLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIY 84 (223)
Q Consensus 5 ~~~~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 84 (223)
++......++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+
T Consensus 13 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 92 (192)
T 2fg5_A 13 GLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMY 92 (192)
T ss_dssp --------CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHH
T ss_pred ccccccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHh
Confidence 34444556889999999999999999999999988887788899988888888888888999999999999999999999
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG 164 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (223)
++.+|++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++..++++++++||+++.|
T Consensus 93 ~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 172 (192)
T 2fg5_A 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAIN 172 (192)
T ss_dssp HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBS
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcC
Confidence 99999999999999999999999999999887767899999999999987777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRMLEK 179 (223)
Q Consensus 165 i~~~~~~i~~~~~~~ 179 (223)
++++|++|.+.+.+.
T Consensus 173 i~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 173 IEELFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999877543
No 22
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=2.1e-33 Score=206.26 Aligned_cols=165 Identities=42% Similarity=0.792 Sum_probs=151.9
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+++|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 35789999999999999999999998888887788888888888888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
++|||++++.++..+..|+..+.....+++|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998877778999999999999877778888999999999999999999999999999999
Q ss_pred HHHHH
Q psy8722 172 LSQRM 176 (223)
Q Consensus 172 i~~~~ 176 (223)
|.+.+
T Consensus 163 i~~~~ 167 (170)
T 1r2q_A 163 IAKKL 167 (170)
T ss_dssp HHHTS
T ss_pred HHHHH
Confidence 98765
No 23
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=4.3e-33 Score=204.67 Aligned_cols=165 Identities=46% Similarity=0.761 Sum_probs=152.9
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 46789999999999999999999999888888888999888888888899889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
++|||++++.++..+..|+..+.....+..|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999998877778999999999999887788889999999999999999999999999999999
Q ss_pred HHHHH
Q psy8722 172 LSQRM 176 (223)
Q Consensus 172 i~~~~ 176 (223)
|.+.+
T Consensus 163 i~~~i 167 (170)
T 1z0j_A 163 ISRRI 167 (170)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98765
No 24
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=1.2e-33 Score=207.68 Aligned_cols=165 Identities=40% Similarity=0.730 Sum_probs=145.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 57999999999999999999999988888888899988888888888888999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
|+|++++.++..+..|+..+......+.|+++|+||+|+ ..+.+..++..+++..++++++++||+++.|++++|++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999998887778999999999999 4456678889999999999999999999999999999999
Q ss_pred HHHHHH
Q psy8722 174 QRMLEK 179 (223)
Q Consensus 174 ~~~~~~ 179 (223)
+.+.++
T Consensus 161 ~~~~~~ 166 (170)
T 1g16_A 161 KLIQEK 166 (170)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 988754
No 25
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=1.6e-33 Score=206.66 Aligned_cols=166 Identities=33% Similarity=0.608 Sum_probs=151.7
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
+++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 35789999999999999999999999888888888998888888888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++|++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 99999999999999999999887765 56899999999999877777889999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy8722 172 LSQRMLE 178 (223)
Q Consensus 172 i~~~~~~ 178 (223)
|.+.+.+
T Consensus 161 l~~~~~~ 167 (168)
T 1z2a_A 161 LAEKHLQ 167 (168)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988764
No 26
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-34 Score=217.44 Aligned_cols=171 Identities=36% Similarity=0.643 Sum_probs=157.5
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 34678999999999999999999999888888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++|+
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE 178 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999987777899999999999988888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 171 ELSQRMLEKAQ 181 (223)
Q Consensus 171 ~i~~~~~~~~~ 181 (223)
+|++.+.++..
T Consensus 179 ~l~~~i~~~~~ 189 (191)
T 3dz8_A 179 RLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhcc
Confidence 99999887643
No 27
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=4e-33 Score=209.12 Aligned_cols=174 Identities=36% Similarity=0.598 Sum_probs=155.0
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEE-EEEEEECCe---------EEEEEEEeCCCccccc
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFL-NKKLNIAGK---------RLNLAIWDTAGQERFH 78 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~~~ 78 (223)
..+.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++. ...+..++. .+.+.+|||||++.+.
T Consensus 5 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 84 (195)
T 3bc1_A 5 DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR 84 (195)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH
T ss_pred ccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH
Confidence 345688999999999999999999999988888888888888877 556666655 7899999999999999
Q ss_pred cccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEe
Q psy8722 79 ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHT 157 (223)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (223)
..+..+++++|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+...+.+..+++.+++..++++++++
T Consensus 85 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3bc1_A 85 SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFET 164 (195)
T ss_dssp HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEE
Confidence 8899999999999999999999999999999999887765 678999999999998777788899999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHH
Q psy8722 158 SAKMNRGIEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 158 Sa~~~~~i~~~~~~i~~~~~~~~~~ 182 (223)
||+++.|++++|++|.+.+.++...
T Consensus 165 Sa~~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 165 SAANGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999876543
No 28
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.7e-33 Score=205.61 Aligned_cols=163 Identities=44% Similarity=0.789 Sum_probs=150.2
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 57999999999999999999999888888888999988888888889988999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc---ccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ---RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
|+|++++.++..+..|+..+......+.|+++|+||+|+... +.+..++..+++...+++++++||+++.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998877778999999999999655 67788889999999999999999999999999999
Q ss_pred HHHHHH
Q psy8722 171 ELSQRM 176 (223)
Q Consensus 171 ~i~~~~ 176 (223)
+|.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 998754
No 29
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=3.7e-33 Score=207.86 Aligned_cols=166 Identities=27% Similarity=0.472 Sum_probs=151.7
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+|+|++|+|||||+++|....+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 46789999999999999999999998888888888888777 66777889889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCC-CCCCHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAK-MNRGIEEMF 169 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~~~ 169 (223)
++|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..++..+++..++++++++||+ ++.|++++|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~ 173 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHH
Confidence 99999999999999999999887643 4678999999999998888889999999999999999999999 999999999
Q ss_pred HHHHHHHHH
Q psy8722 170 LELSQRMLE 178 (223)
Q Consensus 170 ~~i~~~~~~ 178 (223)
++|.+.+.+
T Consensus 174 ~~l~~~i~~ 182 (183)
T 3kkq_A 174 HDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998765
No 30
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=212.38 Aligned_cols=168 Identities=38% Similarity=0.721 Sum_probs=147.4
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+..+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 34678999999999999999999999888887788899988888888889988999999999999999889999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHh-CCcEEEecCCCCCCHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV-GAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~ 169 (223)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++..+ +.+++++||+++.|++++|
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 181 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999999998887778999999999999887788888889998875 7899999999999999999
Q ss_pred HHHHHHHHH
Q psy8722 170 LELSQRMLE 178 (223)
Q Consensus 170 ~~i~~~~~~ 178 (223)
++|.+.+.+
T Consensus 182 ~~l~~~i~~ 190 (192)
T 2il1_A 182 LKLVDDILK 190 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998865
No 31
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1.6e-33 Score=209.40 Aligned_cols=169 Identities=30% Similarity=0.458 Sum_probs=151.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 35789999999999999999999998888888888888877 66777899889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
++|||++++.+++.+..|+..+..... .++|+++|+||+|+...+.+..+++.+++..++++++++||+++.|++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence 999999999999999999998876643 5789999999999988888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 171 ELSQRMLEKAQ 181 (223)
Q Consensus 171 ~i~~~~~~~~~ 181 (223)
+|++.+.....
T Consensus 162 ~l~~~~~~~~~ 172 (181)
T 3t5g_A 162 RIILEAEKMDG 172 (181)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHHhcC
Confidence 99998876543
No 32
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=2.7e-33 Score=207.44 Aligned_cols=168 Identities=36% Similarity=0.657 Sum_probs=153.2
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
.+.+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++|+
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 34678999999999999999999999888888888999988888888899988999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+++|||++++.++..+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|+
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 169 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR 169 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999998887777899999999999988778888999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy8722 171 ELSQRMLE 178 (223)
Q Consensus 171 ~i~~~~~~ 178 (223)
+|.+.+.+
T Consensus 170 ~l~~~~~~ 177 (179)
T 2y8e_A 170 RVAAALPG 177 (179)
T ss_dssp HHHHTCC-
T ss_pred HHHHHHhh
Confidence 99886643
No 33
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=6.8e-33 Score=205.64 Aligned_cols=169 Identities=30% Similarity=0.499 Sum_probs=151.6
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+..+.+||+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 3467899999999999999999999988888888888887765 667788888899999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
+++|||++++.++..+..|+..+... ...+.|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 99999999999999999999888544 44678999999999998877888899999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 170 LELSQRMLEKA 180 (223)
Q Consensus 170 ~~i~~~~~~~~ 180 (223)
++|.+.+.+..
T Consensus 164 ~~l~~~~~~~~ 174 (181)
T 2fn4_A 164 EQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999887654
No 34
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=209.68 Aligned_cols=167 Identities=18% Similarity=0.336 Sum_probs=143.7
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
....+.+||+|+|++|||||||+++|.+..+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+... ..+++.+|
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~ 93 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH 93 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence 3457789999999999999999999998888888888888776 445677888899999999999988775 56889999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecC-CCCCCH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLG---NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSA-KMNRGI 165 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i 165 (223)
++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..+++.+++..++++++++|| +++.|+
T Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv 173 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV 173 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence 99999999999999999999999887642 57899999999999887888899999999999999999999 899999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRMLE 178 (223)
Q Consensus 166 ~~~~~~i~~~~~~ 178 (223)
+++|+.|++.+.+
T Consensus 174 ~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 174 QHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988753
No 35
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=2e-33 Score=208.17 Aligned_cols=167 Identities=30% Similarity=0.514 Sum_probs=148.8
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECC-eEEEEEEEeCCCccccccccccccccCCE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG-KRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
..+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+|||||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45789999999999999999999998888777778888888888888876 67899999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLG---NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEE 167 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (223)
+|+|||++++.+++.+..|+..+..... ...|+++|+||+|+...+.+..++..+++..++++++++||+++.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999999998877532 3344899999999987777888999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 168 MFLELSQRMLE 178 (223)
Q Consensus 168 ~~~~i~~~~~~ 178 (223)
+|++|.+.+.+
T Consensus 163 l~~~l~~~~~~ 173 (178)
T 2hxs_A 163 CFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 36
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=212.08 Aligned_cols=170 Identities=22% Similarity=0.335 Sum_probs=145.2
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc-ccccccccC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA-LGPIYYRMS 88 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~ 88 (223)
.+..+.+||+|+|++|||||||+++|.+......+.++.+.++....+.+++..+.+.+|||+|++.+.. ++..+++.+
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 3456789999999999999999999975444434456667777777788899999999999999987765 667788999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHH
Q psy8722 89 NGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEE 167 (223)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (223)
|++|+|||++++.+|..+..|+..+..... .++|+++|+||+|+...+.+..++..+++..++++++++||+++.|+++
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 177 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHH
Confidence 999999999999999999999998887653 4789999999999987778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 168 MFLELSQRMLEK 179 (223)
Q Consensus 168 ~~~~i~~~~~~~ 179 (223)
+|++|++.+...
T Consensus 178 lf~~l~~~i~~~ 189 (195)
T 3cbq_A 178 LFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 37
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.5e-32 Score=203.27 Aligned_cols=167 Identities=38% Similarity=0.657 Sum_probs=147.8
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+..+.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 35678999999999999999999999888888888999998888888899988999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCccccccCCHHHHHHHHH-HhCCcEEEecCCCCCCH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-SVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i 165 (223)
+++|||++++.++..+..|+..+..... .+.|+++|+||+|+. .+.+..+++.+++. ..+++++++||+++.|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999999887654 678999999999997 55667888888888 56789999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRMLE 178 (223)
Q Consensus 166 ~~~~~~i~~~~~~ 178 (223)
+++|++|++.+++
T Consensus 162 ~~l~~~l~~~~~~ 174 (177)
T 1wms_A 162 AAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 38
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-32 Score=209.86 Aligned_cols=171 Identities=38% Similarity=0.700 Sum_probs=152.1
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccC
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMS 88 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (223)
.....+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+
T Consensus 14 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (213)
T 3cph_A 14 GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGA 93 (213)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTC
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence 33456789999999999999999999998888888889999888888888999889999999999999999999999999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHH
Q psy8722 89 NGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (223)
|++|+|||++++.++..+..|+..+......+.|+++|+||+|+ ..+.+..++..+++..++++++++||+++.|++++
T Consensus 94 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 172 (213)
T 3cph_A 94 MGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEI 172 (213)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998877778999999999999 45566788889999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 169 FLELSQRMLEKA 180 (223)
Q Consensus 169 ~~~i~~~~~~~~ 180 (223)
|++|.+.+.++.
T Consensus 173 ~~~l~~~~~~~~ 184 (213)
T 3cph_A 173 FFTLAKLIQEKI 184 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 39
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=212.21 Aligned_cols=168 Identities=36% Similarity=0.613 Sum_probs=139.7
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
...+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 34678999999999999999999999888877778888888888888889988999999999999999888999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc------ccccCCHHHHHHHHHHhCCcEEEecCCCCCC
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE------KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG 164 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (223)
+|+|||++++.++..+..|+..+......++|+++|+||+|+. ..+.+..++..+++...+++++++||+++.|
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 183 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 9999999999999999999999988776779999999999985 3466778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRMLE 178 (223)
Q Consensus 165 i~~~~~~i~~~~~~ 178 (223)
++++|++|++.+.+
T Consensus 184 v~el~~~l~~~i~~ 197 (199)
T 2p5s_A 184 IVEAVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
No 40
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=9.8e-33 Score=207.65 Aligned_cols=172 Identities=24% Similarity=0.518 Sum_probs=148.8
Q ss_pred CCCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q psy8722 7 DRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYR 86 (223)
Q Consensus 7 ~~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (223)
.......+.+||+++|++|+|||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..+++
T Consensus 15 ~~~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 93 (194)
T 3reg_A 15 GKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYA 93 (194)
T ss_dssp ------CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred ccccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhcc
Confidence 334455788999999999999999999999888888888888877653 5678888899999999999999999999999
Q ss_pred cCCEEEEEEECCCHHHHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCccc--cccCCHHHHHHHHHHhCCc-EEEecCCCC
Q psy8722 87 MSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEK--QRTVMQEDAEKYAQSVGAV-HFHTSAKMN 162 (223)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~ 162 (223)
++|++|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.. .+.+..++..+++..+++. ++++||+++
T Consensus 94 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 172 (194)
T 3reg_A 94 DSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAK 172 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTT
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCC
Confidence 99999999999999999997 67988888654 5689999999999965 3677889999999999998 999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~~~~ 180 (223)
.|++++|++|.+.+.++.
T Consensus 173 ~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 173 IGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp BSHHHHHHHHHHHHHCSC
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 999999999999887543
No 41
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.2e-32 Score=205.79 Aligned_cols=165 Identities=20% Similarity=0.381 Sum_probs=143.9
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
....+.+||+|+|++|||||||+++|....+...+.++ +..+ ...+.+++..+.+.+|||+|++.+. +++++|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 34577999999999999999999999998888777666 3334 4677889999999999999998775 788999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCc--cccccCCHHHHHHHHHHhC-CcEEEecCCCCCCH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDL--EKQRTVMQEDAEKYAQSVG-AVHFHTSAKMNRGI 165 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl--~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 165 (223)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+ ...+.+..+++.+++..++ ++|+++||+++.|+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence 99999999999999999999999987653 57899999999999 4567788899999999997 89999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRMLEKAQ 181 (223)
Q Consensus 166 ~~~~~~i~~~~~~~~~ 181 (223)
+++|++|++.+.+.+.
T Consensus 168 ~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 168 ERVFQDVAQKVVALRK 183 (184)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887643
No 42
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=2.7e-33 Score=213.53 Aligned_cols=167 Identities=28% Similarity=0.576 Sum_probs=144.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4689999999999999999999998888877778887665 445667888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccccc--------CCHHHHHHHHHHhCC-cEEEecCCCC
Q psy8722 93 LVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQRT--------VMQEDAEKYAQSVGA-VHFHTSAKMN 162 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (223)
+|||++++.++..+. .|+..+.... ++.|+++|+||+|+...+. +..++..+++..+++ +++++||+++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 999999999999987 7999988765 3789999999999865543 367888999999996 9999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~~~~~ 181 (223)
.|++++|++|++.+.+...
T Consensus 165 ~gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp TTHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHhhhhh
Confidence 9999999999998876543
No 43
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=7.3e-33 Score=203.50 Aligned_cols=165 Identities=23% Similarity=0.352 Sum_probs=135.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc-ccccccccCCEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA-LGPIYYRMSNGAVL 93 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~ 93 (223)
.+||+++|++|+|||||+++|.+..+.....++.+.+.....+.+++..+.+.+||++|++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999997777666667777788888888999999999999999998876 66777899999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..++..+++..++++++++||+++.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999999887654 478999999999998888889999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy8722 173 SQRMLEK 179 (223)
Q Consensus 173 ~~~~~~~ 179 (223)
.+.+..+
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988764
No 44
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=5.7e-33 Score=212.36 Aligned_cols=171 Identities=24% Similarity=0.426 Sum_probs=146.5
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
.+..+.+||+|+|++|||||||+++|....+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+...+..+++++|
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 3446789999999999999999999999988888888888776 455667888899999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHH-HHHHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cEE
Q psy8722 90 GAVLVYDITDEDSFEK-VKNWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VHF 155 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~ 155 (223)
++|+|||++++.++.. +..|+..+.... ++.|+++|+||+|+... +.+..+++.+++..+++ +++
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 179 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL 179 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence 9999999999999999 688999998875 57999999999999653 67889999999999999 999
Q ss_pred EecCCCCCC-HHHHHHHHHHHHHHHHHH
Q psy8722 156 HTSAKMNRG-IEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 156 ~~Sa~~~~~-i~~~~~~i~~~~~~~~~~ 182 (223)
++||+++.| ++++|++|++.+..+...
T Consensus 180 e~SA~~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 180 EGSAFTSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred EeccCCCcccHHHHHHHHHHHHhccCcC
Confidence 999999998 999999999998766543
No 45
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=7.3e-33 Score=207.50 Aligned_cols=167 Identities=34% Similarity=0.640 Sum_probs=148.4
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccc-cccccccccCCE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH-ALGPIYYRMSNG 90 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~ 90 (223)
..+.+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+|||||++.+. ..+..+++++|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 3567999999999999999999999988888888899988888888899988999999999999887 788889999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCC---CCHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMN---RGIE 166 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~ 166 (223)
+|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+...+.+..++..+++..++++++++||+++ .|+.
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~ 176 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE 176 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence 999999999999999999999988775 467999999999999887788889999999999999999999999 9999
Q ss_pred HHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLE 178 (223)
Q Consensus 167 ~~~~~i~~~~~~ 178 (223)
++|++|++.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (189)
T 1z06_A 177 AIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHC-----
T ss_pred HHHHHHHHHHhh
Confidence 999999887643
No 46
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=203.05 Aligned_cols=167 Identities=24% Similarity=0.350 Sum_probs=136.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc--cccccccccccCCE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER--FHALGPIYYRMSNG 90 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~ 90 (223)
.+.+||+++|++|+|||||+++|.+..+... .++.+.++....+.+++..+.+.+|||||++. +......+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 5689999999999999999999997776544 34566677677778889889999999999887 55666778899999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
+++|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999998887653 3478999999999998877888888899999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 170 LELSQRMLEKA 180 (223)
Q Consensus 170 ~~i~~~~~~~~ 180 (223)
++|.+.+..+.
T Consensus 161 ~~l~~~~~~~~ 171 (175)
T 2nzj_A 161 EGVVRQLRLRR 171 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999887654
No 47
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=3e-32 Score=202.01 Aligned_cols=164 Identities=18% Similarity=0.374 Sum_probs=141.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|||||||+++|.+..+.. +.+|.+..+ ...+.+++..+.+.+|||+|++. ..+++++|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 578999999999999999999999888876 667777554 56677888889999999999876 45788999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCc--cccccCCHHHHHHHHHHh-CCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLG---NDICLTIAGNKIDL--EKQRTVMQEDAEKYAQSV-GAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl--~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~ 166 (223)
+|||++++.++..+..|+..+..... +++|+++|+||+|+ ...+.+..+++.+++... +++++++||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 99999999999999998777666543 57899999999999 356677888999998877 6899999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEKAQEF 183 (223)
Q Consensus 167 ~~~~~i~~~~~~~~~~~ 183 (223)
++|++|++.+.......
T Consensus 158 ~lf~~l~~~~~~~~~~~ 174 (178)
T 2iwr_A 158 RVFQEVAQKVVTLRKQQ 174 (178)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999998775543
No 48
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.4e-33 Score=210.30 Aligned_cols=170 Identities=29% Similarity=0.444 Sum_probs=145.8
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 46789999999999999999999999888888788887776 55666677778999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++|+
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999987653 34689999999999988888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 171 ELSQRMLEKAQE 182 (223)
Q Consensus 171 ~i~~~~~~~~~~ 182 (223)
+|.+.+.+....
T Consensus 180 ~l~~~i~~~~~~ 191 (201)
T 3oes_A 180 KVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHhhhhh
Confidence 999998776544
No 49
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=2.9e-33 Score=214.08 Aligned_cols=172 Identities=34% Similarity=0.603 Sum_probs=152.7
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCe----------EEEEEEEeCCCccccccc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGK----------RLNLAIWDTAGQERFHAL 80 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~~~~ 80 (223)
+.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++. .+.+.||||||++.+...
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 3477899999999999999999999988887777788888887777777665 789999999999999888
Q ss_pred cccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecC
Q psy8722 81 GPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
+..+++.+|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+...+.+..++..+++..++++++++||
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 180 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA 180 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEEC
Confidence 89999999999999999999999999999887765443 57899999999999887788889999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~~~~~ 182 (223)
+++.|++++|++|.+.+.++..+
T Consensus 181 ~~g~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 181 ATGQNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp TTTBTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999876544
No 50
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1.3e-32 Score=204.19 Aligned_cols=170 Identities=37% Similarity=0.625 Sum_probs=136.5
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccCC
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA-GKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
...+.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 34678999999999999999999999988888888888888888777776 55678999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCcc-ccccCCHHHHHHHHH-HhCCcEEEecCCCCC
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDLE-KQRTVMQEDAEKYAQ-SVGAVHFHTSAKMNR 163 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 163 (223)
++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. ..+.+..++..+++. ..+.+++++||+++.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 99999999999999999999998887654 678999999999994 445567888888887 566799999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRMLEKA 180 (223)
Q Consensus 164 ~i~~~~~~i~~~~~~~~ 180 (223)
|++++|++|.+.+.++.
T Consensus 164 gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 164 NVDTAFEEIARSALQQN 180 (182)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999987654
No 51
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=2.2e-32 Score=200.29 Aligned_cols=165 Identities=30% Similarity=0.515 Sum_probs=144.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 3579999999999999999999998888777777776665 345677888889999999999999989999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
+|||++++.++..+..|+..+..... .+.|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 99999999999999999999887654 57999999999999887778889999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy8722 172 LSQRMLE 178 (223)
Q Consensus 172 i~~~~~~ 178 (223)
|.+.+.+
T Consensus 161 l~~~i~~ 167 (168)
T 1u8z_A 161 LMREIRA 167 (168)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9988753
No 52
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.8e-32 Score=203.80 Aligned_cols=167 Identities=30% Similarity=0.592 Sum_probs=147.3
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccC
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMS 88 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (223)
..+..+.+||+++|++|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 90 (194)
T 2atx_A 12 HGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMT 90 (194)
T ss_dssp SCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTC
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCC
Confidence 34456889999999999999999999998888877788877665 44566788889999999999999999999999999
Q ss_pred CEEEEEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cE
Q psy8722 89 NGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VH 154 (223)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~ 154 (223)
|++|+|||++++.++..+. .|+..+.... +++|+++|+||+|+... +.+..++..+++..+++ ++
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 169 (194)
T 2atx_A 91 DVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY 169 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEE
Confidence 9999999999999999997 7999888764 36899999999999653 46778899999999998 89
Q ss_pred EEecCCCCCCHHHHHHHHHHHHH
Q psy8722 155 FHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
+++||+++.|++++|++|++.++
T Consensus 170 ~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 170 VECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998875
No 53
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=4.2e-32 Score=205.18 Aligned_cols=170 Identities=26% Similarity=0.472 Sum_probs=140.2
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
....+.+||+++|++|+|||||+++|.+..+...+.+|.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 3457799999999999999999999998878777777776555 456677888899999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCccc------------cccCCHHHHHHHHHHhCC-cEE
Q psy8722 90 GAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEK------------QRTVMQEDAEKYAQSVGA-VHF 155 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~ 155 (223)
++|+|||++++.++..+. .|+..+..... ++|+++|+||+|+.. .+.+..++...++..++. +++
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI 172 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence 999999999999999997 69998887653 789999999999965 356778889999999998 899
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHH
Q psy8722 156 HTSAKMNRGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 156 ~~Sa~~~~~i~~~~~~i~~~~~~~~~ 181 (223)
++||+++.|++++|++|++.+.+...
T Consensus 173 ~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 173 ECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred EEecCCCCCHHHHHHHHHHHHhcccc
Confidence 99999999999999999999887644
No 54
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=3.8e-32 Score=202.62 Aligned_cols=169 Identities=30% Similarity=0.515 Sum_probs=149.4
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
...+.+||+|+|++|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 346789999999999999999999998888777777777665 4456678888899999999999999889999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
+++|||++++.++..+..|+..+..... .++|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++|
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence 9999999999999999999999887654 478999999999998877788899999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 170 LELSQRMLEKA 180 (223)
Q Consensus 170 ~~i~~~~~~~~ 180 (223)
++|.+.+.+++
T Consensus 173 ~~l~~~i~~~~ 183 (187)
T 2a9k_A 173 FDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999987654
No 55
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=8.8e-32 Score=201.05 Aligned_cols=169 Identities=29% Similarity=0.535 Sum_probs=146.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
++.+||+++|++|+|||||+++|.+..+...+.++.+. .....+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCE-EEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchh-eEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 57899999999999999999999988887776666644 44566678888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+. .+.+..+...+++..++++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999988754 3578999999999996 4456788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 172 LSQRMLEKAQEF 183 (223)
Q Consensus 172 i~~~~~~~~~~~ 183 (223)
|.+.+.+.....
T Consensus 160 l~~~~~~~~~~~ 171 (189)
T 4dsu_A 160 LVREIRKHKEKM 171 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhc
Confidence 999998776554
No 56
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-32 Score=205.27 Aligned_cols=168 Identities=39% Similarity=0.710 Sum_probs=152.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 45789999999999999999999999888888888999888888888899889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
|+|||++++.++..+..|+..+..... .++|+++|+||+|+. .+.+..++..+++...+++++++||+++.|++++|+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFE 170 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 999999999999999999998876542 578999999999994 445678889999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 171 ELSQRMLEKA 180 (223)
Q Consensus 171 ~i~~~~~~~~ 180 (223)
+|.+.+.+..
T Consensus 171 ~l~~~~~~~~ 180 (195)
T 1x3s_A 171 ELVEKIIQTP 180 (195)
T ss_dssp HHHHHHHTSG
T ss_pred HHHHHHHhhh
Confidence 9999987654
No 57
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.4e-32 Score=205.06 Aligned_cols=168 Identities=31% Similarity=0.491 Sum_probs=147.7
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
...+.+||+|+|++|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+||+||++. ...+..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 24 AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 346789999999999999999999998888877778877665 44567788889999999999887 6677888999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCC-CHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNR-GIEEM 168 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~ 168 (223)
+++|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..++..+++..++++++++||+++. |++++
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l 181 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEI 181 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHH
Confidence 999999999999999999999888764 3579999999999998877888899999999999999999999999 99999
Q ss_pred HHHHHHHHHHHH
Q psy8722 169 FLELSQRMLEKA 180 (223)
Q Consensus 169 ~~~i~~~~~~~~ 180 (223)
|++|++.+.++.
T Consensus 182 ~~~l~~~i~~~~ 193 (196)
T 2atv_A 182 FYELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999987654
No 58
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=7.2e-32 Score=203.80 Aligned_cols=165 Identities=37% Similarity=0.644 Sum_probs=147.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeE-----------------------------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKR----------------------------- 63 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 63 (223)
.+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 568999999999999999999999988888888899888888777777655
Q ss_pred --------EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc
Q psy8722 64 --------LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135 (223)
Q Consensus 64 --------~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (223)
+.+.+|||||++.+...+..+++.+|++|+|+|++++.++..+..|+..+..... .|+++|+||+| ...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-ccc
Confidence 8899999999999999999999999999999999999999999999999887653 89999999999 455
Q ss_pred ccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
+.+..+++.+++..++++++++||+++.|++++|++|.+.+.++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 677889999999999999999999999999999999999887653
No 59
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=6.1e-33 Score=210.52 Aligned_cols=171 Identities=24% Similarity=0.375 Sum_probs=116.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC--CCCCCCccccceeEEEEEEEECCe--EEEEEEEeCCCccccccccccccccC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED--KFNEKHITTLQASFLNKKLNIAGK--RLNLAIWDTAGQERFHALGPIYYRMS 88 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (223)
.+.+||+|+|++|+|||||+++|.+. .+...+.+|.+.++....+.+++. .+.+.+|||||++.+...+..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 57899999999999999999999987 777777788887887788888876 78999999999999999999999999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCccc-cccCCHHHHHHHHHHhCCcEEEecCCC-CC
Q psy8722 89 NGAVLVYDITDEDSFEKVKNWVKELKKMLG---NDICLTIAGNKIDLEK-QRTVMQEDAEKYAQSVGAVHFHTSAKM-NR 163 (223)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~ 163 (223)
|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.. .+.+..+++.+++..++++++++||++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988766 6799999999999987 677888999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRMLEKAQEF 183 (223)
Q Consensus 164 ~i~~~~~~i~~~~~~~~~~~ 183 (223)
|++++|++|.+.+.+...+.
T Consensus 178 gi~~l~~~i~~~~~~~~~~~ 197 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNYEDK 197 (208)
T ss_dssp --CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 99999999999988766544
No 60
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=4.7e-32 Score=198.54 Aligned_cols=163 Identities=30% Similarity=0.549 Sum_probs=145.2
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+++|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999988888777788776653 456677888999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHh-CCcEEEecCCCCCCHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV-GAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++..+++..+ +.+++++||++|.|++++|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 999999999999999998887754 357999999999999887788889999999888 789999999999999999999
Q ss_pred HHHHHH
Q psy8722 172 LSQRML 177 (223)
Q Consensus 172 i~~~~~ 177 (223)
|.+.+.
T Consensus 161 l~~~i~ 166 (167)
T 1c1y_A 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988763
No 61
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=4.4e-32 Score=198.75 Aligned_cols=164 Identities=23% Similarity=0.366 Sum_probs=124.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+++|++|+|||||+++|.+...... .++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|++++
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI 78 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence 368999999999999999999986555422 34444444 4566788889999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..++..+++...+++++++||++|.|++++|++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence 999999999999999999887653 3578999999999998888889999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy8722 173 SQRMLEK 179 (223)
Q Consensus 173 ~~~~~~~ 179 (223)
.+.+.++
T Consensus 159 ~~~~~~~ 165 (166)
T 3q72_A 159 VRQIRLR 165 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988765
No 62
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=4.9e-32 Score=198.22 Aligned_cols=163 Identities=30% Similarity=0.547 Sum_probs=145.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 468999999999999999999998888777777766544 5667788888899999999999998888999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
|||++++.++..+..|+..+..... .+.|+++|+||+|+...+++..++..+++..++++++++||+++.|++++|++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 9999999999999999988877643 579999999999998777888889999999999999999999999999999999
Q ss_pred HHHHH
Q psy8722 173 SQRML 177 (223)
Q Consensus 173 ~~~~~ 177 (223)
.+.+.
T Consensus 161 ~~~~~ 165 (167)
T 1kao_A 161 VRQMN 165 (167)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98774
No 63
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=4.2e-32 Score=202.62 Aligned_cols=165 Identities=22% Similarity=0.492 Sum_probs=144.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+++|++|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 46789999999999999999999998888877788887766 34566788889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhC-CcEEEe
Q psy8722 92 VLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVG-AVHFHT 157 (223)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 157 (223)
|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+... +.+..+++.+++..++ .+++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 67998887764 46899999999999642 5678888999999988 689999
Q ss_pred cCC-CCCCHHHHHHHHHHHHHH
Q psy8722 158 SAK-MNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 158 Sa~-~~~~i~~~~~~i~~~~~~ 178 (223)
||+ ++.|++++|+.+++.++.
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eecCCCcCHHHHHHHHHHHHhc
Confidence 998 689999999999988763
No 64
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.3e-32 Score=205.24 Aligned_cols=168 Identities=23% Similarity=0.354 Sum_probs=140.2
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCC--CCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc-ccccccccccc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDK--FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER-FHALGPIYYRM 87 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~ 87 (223)
...+.+||+|+|++|||||||+++|.+.. +... .++++.++....+.+++..+.+.+|||+|.+. +..+...+++.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 34667999999999999999999998533 3333 34577777777788899889999999999876 44556778899
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHH
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (223)
++++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+...+.+..++...++..++++++++||++|.|++
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~ 191 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999999988877542 3578999999999998777888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEK 179 (223)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (223)
++|++|++.+..+
T Consensus 192 elf~~l~~~i~~~ 204 (211)
T 2g3y_A 192 ELFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988543
No 65
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=3.2e-31 Score=197.50 Aligned_cols=165 Identities=28% Similarity=0.557 Sum_probs=145.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 5789999999999999999999998888877777776655 455678888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cEEEec
Q psy8722 93 LVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VHFHTS 158 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 158 (223)
+|||++++.++..+. .|+..+..... +.|+++|+||+|+... +.+..++..+++..++. +++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999987 69988887654 7899999999998653 46678888999999997 999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q psy8722 159 AKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 159 a~~~~~i~~~~~~i~~~~~~~ 179 (223)
|++|.|++++|++|.+.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCC
T ss_pred CCCccCHHHHHHHHHHHHhcc
Confidence 999999999999999887643
No 66
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=9.8e-32 Score=204.20 Aligned_cols=165 Identities=23% Similarity=0.495 Sum_probs=144.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+|+|++|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..+++++|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 46789999999999999999999999888887788887776 34566788889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCccc------------cccCCHHHHHHHHHHhC-CcEEEe
Q psy8722 92 VLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEK------------QRTVMQEDAEKYAQSVG-AVHFHT 157 (223)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~ 157 (223)
|+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.. .+.+..+++.+++..++ .+++++
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 182 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 182 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 999999999999998 68999887764 4689999999999964 25677888999999988 699999
Q ss_pred cCC-CCCCHHHHHHHHHHHHHH
Q psy8722 158 SAK-MNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 158 Sa~-~~~~i~~~~~~i~~~~~~ 178 (223)
||+ ++.|++++|+.|++.++.
T Consensus 183 SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 183 SALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHHHHhh
Confidence 999 689999999999998774
No 67
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=6.8e-31 Score=196.75 Aligned_cols=167 Identities=31% Similarity=0.545 Sum_probs=136.6
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+++|++|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 45789999999999999999999998887777666666554 45667788889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
++|||++++.++..+..|+..+..... .+.|+++|+||+|+.. +.+..++..+++..++++++++||+++.|++++|+
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 175 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFY 175 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999999887654 5789999999999865 55678889999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 171 ELSQRMLEKA 180 (223)
Q Consensus 171 ~i~~~~~~~~ 180 (223)
+|.+.+.+.+
T Consensus 176 ~l~~~~~~~~ 185 (190)
T 3con_A 176 TLVREIRQYR 185 (190)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999887653
No 68
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=1.2e-31 Score=205.00 Aligned_cols=167 Identities=31% Similarity=0.577 Sum_probs=125.9
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 45789999999999999999999998888777777776554 44567888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cEEEe
Q psy8722 92 VLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VHFHT 157 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 157 (223)
|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+... +.+..++..+++..+++ +++++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999997 6998887764 46899999999999654 25677888999999998 99999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 158 SAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 158 Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
||++|.|++++|++|++.+++..
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999987653
No 69
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=7e-31 Score=198.72 Aligned_cols=163 Identities=29% Similarity=0.588 Sum_probs=144.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
...+||+++|++|+|||||+++|....+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..+++++|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 568999999999999999999999888888878888877653 4677888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cEEEec
Q psy8722 93 LVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VHFHTS 158 (223)
Q Consensus 93 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 158 (223)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+... +.+..++..+++...+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999998 57888887754 46899999999998654 45778889999999998 899999
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q psy8722 159 AKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 159 a~~~~~i~~~~~~i~~~~~ 177 (223)
|+++.|++++|++|.+.++
T Consensus 181 A~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998875
No 70
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.9e-32 Score=204.82 Aligned_cols=165 Identities=30% Similarity=0.477 Sum_probs=143.1
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..++..+|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 356799999999999999999999988887777777765553 4556788888999999999999988888999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. +.+..++...++..++++++++||+++.|++++|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence 999999999999999998888777543 3689999999999965 4567788889999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy8722 170 LELSQRMLE 178 (223)
Q Consensus 170 ~~i~~~~~~ 178 (223)
++|.+.+.+
T Consensus 163 ~~l~~~~~~ 171 (199)
T 2gf0_A 163 QELLTLETR 171 (199)
T ss_dssp HHHHHHCSS
T ss_pred HHHHHHHhh
Confidence 999886643
No 71
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=2.7e-31 Score=195.29 Aligned_cols=162 Identities=31% Similarity=0.497 Sum_probs=142.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+++|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 5799999999999999999999988887777777766553 445677888899999999999998888889999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..++...++..++++++++||+++.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999999999888877643 46899999999999877778888889999999999999999999999999999
Q ss_pred HHHHH
Q psy8722 172 LSQRM 176 (223)
Q Consensus 172 i~~~~ 176 (223)
|.+.+
T Consensus 161 l~~~~ 165 (172)
T 2erx_A 161 LLNLE 165 (172)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 98754
No 72
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.98 E-value=1.4e-30 Score=195.82 Aligned_cols=167 Identities=23% Similarity=0.350 Sum_probs=138.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC--CCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc-cccccccccccCC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED--KFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER-FHALGPIYYRMSN 89 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d 89 (223)
.+.+||+++|++|||||||+++|.+. .+... .++++.++....+.+++..+.+.+|||+|.+. +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 45799999999999999999999853 33333 34567777777788899989999999999776 4556677889999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (223)
++++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+...+.+..++...++..++++++++||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999998887653 357899999999999777778888888888889999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 169 FLELSQRMLEKA 180 (223)
Q Consensus 169 ~~~i~~~~~~~~ 180 (223)
|+++++.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999886554
No 73
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.98 E-value=2.3e-31 Score=201.91 Aligned_cols=169 Identities=26% Similarity=0.530 Sum_probs=139.6
Q ss_pred CCCCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q psy8722 6 LDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYY 85 (223)
Q Consensus 6 ~~~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 85 (223)
+.+.....+.+||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++
T Consensus 21 m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 99 (204)
T 4gzl_A 21 MENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSY 99 (204)
T ss_dssp ---------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTTGGGGC
T ss_pred HHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHHHHHHh
Confidence 33444557789999999999999999999998888877777775443 55667788889999999999999999999999
Q ss_pred ccCCEEEEEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCccccc------------cCCHHHHHHHHHHhCC
Q psy8722 86 RMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQR------------TVMQEDAEKYAQSVGA 152 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~ 152 (223)
+++|++++|||++++.++..+. .|+..+.... .+.|+++|+||+|+.... .+..++...++..+++
T Consensus 100 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 178 (204)
T 4gzl_A 100 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 178 (204)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCC
Confidence 9999999999999999999997 7998888765 578999999999986543 3678889999999997
Q ss_pred -cEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 153 -VHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 153 -~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
+++++||++|.|++++|++|.+.+
T Consensus 179 ~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 179 VKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 599999999999999999998754
No 74
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.98 E-value=6e-34 Score=215.23 Aligned_cols=167 Identities=35% Similarity=0.714 Sum_probs=143.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 46789999999999999999999998888888788888888888888999989999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++|++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~ 189 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 189 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998877678999999999999877777777788899999999999999999999999999
Q ss_pred HHHHHHH
Q psy8722 172 LSQRMLE 178 (223)
Q Consensus 172 i~~~~~~ 178 (223)
|.+.+.+
T Consensus 190 l~~~l~~ 196 (199)
T 3l0i_B 190 MAAEIKK 196 (199)
T ss_dssp HTTTTTT
T ss_pred HHHHHHH
Confidence 9877643
No 75
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.98 E-value=4.5e-32 Score=203.94 Aligned_cols=171 Identities=23% Similarity=0.304 Sum_probs=140.5
Q ss_pred CCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCC-----------CccccceeEEEEEE-EECCeEEEEEEEeCCCcc
Q psy8722 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEK-----------HITTLQASFLNKKL-NIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 8 ~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~ 75 (223)
.....++.+||+|+|++|+|||||++.+.+ .+... +.+|.+.++....+ .+++..+.+.+|||||++
T Consensus 7 ~~~~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 85 (198)
T 3t1o_A 7 NFANREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV 85 (198)
T ss_dssp ETTTTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCC
T ss_pred chhccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChH
Confidence 345568899999999999999999976654 33333 23455556555444 567778899999999999
Q ss_pred ccccccccccccCCEEEEEEECC------CHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHH
Q psy8722 76 RFHALGPIYYRMSNGAVLVYDIT------DEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS 149 (223)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (223)
.+...+..+++++|++|+|||++ +..++..+..|+..+.. ...++|+++|+||+|+... +..+++.+++..
T Consensus 86 ~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~ 162 (198)
T 3t1o_A 86 FYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDP 162 (198)
T ss_dssp SCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTTC--CCHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhcccc--cCHHHHHHHHHh
Confidence 99999999999999999999999 56778888888877732 3357899999999998654 678899999999
Q ss_pred hCC-cEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Q psy8722 150 VGA-VHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 150 ~~~-~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 182 (223)
+++ +++++||+++.|++++|++|.+.+.++..+
T Consensus 163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 163 EGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp TCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred cCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 999 999999999999999999999999887543
No 76
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=1.5e-30 Score=197.76 Aligned_cols=165 Identities=29% Similarity=0.577 Sum_probs=139.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
...+||+++|++|+|||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..++.++|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 568999999999999999999999888887777787776644 3677888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cEEEec
Q psy8722 93 LVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VHFHTS 158 (223)
Q Consensus 93 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 158 (223)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+... +.+..++..+++...+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998 67988887754 46899999999999654 45677888899999998 899999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q psy8722 159 AKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 159 a~~~~~i~~~~~~i~~~~~~~ 179 (223)
|+++.|++++|++|.+.++..
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988643
No 77
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.98 E-value=1.2e-31 Score=205.32 Aligned_cols=171 Identities=26% Similarity=0.485 Sum_probs=147.2
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccCC
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA-GKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
...+.+||+|+|++|+|||||+++|.+..+...+.++.+.......+... +..+.+.+|||||++.+...+..++.++|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 34678999999999999999999999888877777888877766665554 44488999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
++|+|||++++.++..+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||++|.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 99999999999999999999999998887779999999999998777888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 170 LELSQRMLEKAQ 181 (223)
Q Consensus 170 ~~i~~~~~~~~~ 181 (223)
++|.+.+.....
T Consensus 167 ~~l~~~~~~~~~ 178 (218)
T 4djt_A 167 LHLARIFTGRPD 178 (218)
T ss_dssp HHHHHHHHCCTT
T ss_pred HHHHHHHhcccc
Confidence 999998866543
No 78
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.98 E-value=1.4e-30 Score=190.10 Aligned_cols=162 Identities=32% Similarity=0.577 Sum_probs=142.8
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 368999999999999999999998887777667666544 4556678888999999999999998888889999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.. +....++..+++..++++++++||+++.|++++|++|
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999999887654 4789999999999865 4567888999999999999999999999999999999
Q ss_pred HHHHH
Q psy8722 173 SQRML 177 (223)
Q Consensus 173 ~~~~~ 177 (223)
.+.+.
T Consensus 160 ~~~~~ 164 (166)
T 2ce2_X 160 VREIR 164 (166)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 79
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.98 E-value=6e-32 Score=200.91 Aligned_cols=164 Identities=27% Similarity=0.560 Sum_probs=127.5
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+++|++|+|||||+++|....+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 356899999999999999999999988887777777765543 2344566678889999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccccc----------CCHHHHHHHHHHhCC-cEEEecC
Q psy8722 92 VLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQRT----------VMQEDAEKYAQSVGA-VHFHTSA 159 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 159 (223)
++|||++++.+++.+. .|+..+.... ++.|+++|+||+|+...+. +..++..+++..++. +++++||
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 9999999999999997 6999888765 3789999999999865543 467888999999997 9999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQRML 177 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~ 177 (223)
+++.|++++|++|.+.++
T Consensus 163 ~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 163 KSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TTCTTHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998764
No 80
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=1e-29 Score=192.00 Aligned_cols=168 Identities=35% Similarity=0.644 Sum_probs=150.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
++.++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 46799999999999999999999998888777888888888888889999899999999999999888888899999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
+|+|+.+..++..+..|+..+......+.|+++++||+|+...+.+..+++..++...++.++++|++++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999899988876655678999999999998777778888999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy8722 173 SQRMLEKA 180 (223)
Q Consensus 173 ~~~~~~~~ 180 (223)
.+.+.+..
T Consensus 163 ~~~~~~~~ 170 (199)
T 2f9l_A 163 LTEIYRIV 170 (199)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
No 81
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=3.6e-31 Score=203.10 Aligned_cols=170 Identities=27% Similarity=0.531 Sum_probs=149.7
Q ss_pred CCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q psy8722 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87 (223)
Q Consensus 8 ~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (223)
......+.+||+|+|++|+|||||+++|+.+.+...+.++.+.++......+++..+.+.+|||||++.+...+..++++
T Consensus 8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (221)
T 3gj0_A 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ 87 (221)
T ss_dssp STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence 34456788999999999999999999988777777778888888888888889999999999999999999999999999
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHH
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEE 167 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (223)
+|++|+|||++++.++..+..|+..+.... .++|+++|+||+|+..... ..+...++...+++++++||+++.|+++
T Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEK 164 (221)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTTH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999999999998875 4689999999999965443 2356678888999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 168 MFLELSQRMLEKA 180 (223)
Q Consensus 168 ~~~~i~~~~~~~~ 180 (223)
+|++|.+.+....
T Consensus 165 l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 165 PFLWLARKLIGDP 177 (221)
T ss_dssp HHHHHHHHHHTCT
T ss_pred HHHHHHHHHHhCc
Confidence 9999999886553
No 82
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=2.6e-30 Score=194.76 Aligned_cols=166 Identities=18% Similarity=0.258 Sum_probs=129.6
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCC-CCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNE-KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMS 88 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (223)
++..+.+||+|+|++|||||||+++|.+..+.. .+.+|.+... ..+...+ +.+.+|||||++.+...+..+++++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKGR--VAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeCC--EEEEEEECCCCHhHHHHHHHHHhcC
Confidence 445778999999999999999999999888877 7778877443 3334443 7899999999999999999999999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHcC--------CCCeEEEEEeCCCccccccCCHHHHHHH------HHHhCCcE
Q psy8722 89 NGAVLVYDITDEDSFEKVKNWVKELKKMLG--------NDICLTIAGNKIDLEKQRTVMQEDAEKY------AQSVGAVH 154 (223)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~ 154 (223)
|++|+|||++++.+|..+..|+..+..... .++|+++|+||+|+..... .++..+. +...++++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~ 165 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVI 165 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEE
Confidence 999999999999999999998888765421 2689999999999965532 2222211 13466789
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy8722 155 FHTSAKMNRGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 181 (223)
+++||+++.|++++|++|.+.+.+...
T Consensus 166 ~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 166 FASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred EEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999887643
No 83
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=1.1e-28 Score=185.20 Aligned_cols=166 Identities=35% Similarity=0.654 Sum_probs=150.7
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+.++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+++...+..+++.+++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 45678999999999999999999999988888888999999888888999988899999999999998888888999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+++|+|..+..+++.+..|+..+......+.|+++++||.|+.+.+....+++..++...++.++++|++++.++.++|+
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~ 184 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQ 184 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999998899887766556789999999999987777788889999999999999999999999999999
Q ss_pred HHHHHH
Q psy8722 171 ELSQRM 176 (223)
Q Consensus 171 ~i~~~~ 176 (223)
.|.+.+
T Consensus 185 ~l~~~i 190 (191)
T 1oix_A 185 TILTEI 190 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
No 84
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=3.9e-29 Score=186.57 Aligned_cols=160 Identities=20% Similarity=0.236 Sum_probs=129.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|+|||||+++|.+.. ...+.+|.+.. ...+.+++ +.+.+|||||++.+...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 678999999999999999999999776 55666776644 34455555 78999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 166 (223)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.... ..++..+... ..+++++++||+++.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 999999999999999988877654 23578999999999996543 3344433322 235589999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEK 179 (223)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (223)
++|++|.+.+.++
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887654
No 85
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=1.4e-29 Score=191.17 Aligned_cols=157 Identities=24% Similarity=0.321 Sum_probs=123.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.++|+++|++|||||||+++|.+..+. .+.+|.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 96 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGI 96 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEE
Confidence 356789999999999999999999977664 345665554 34556666 7899999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHH-----------------hCCc
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS-----------------VGAV 153 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 153 (223)
++|+|++++.++..+..|+..+... ...++|+++|+||+|+.. .+..+++.+++.. .+.+
T Consensus 97 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (198)
T 1f6b_A 97 VFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLE 174 (198)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEE
Confidence 9999999999999999998887654 235789999999999965 4567777776653 2357
Q ss_pred EEEecCCCCCCHHHHHHHHHHH
Q psy8722 154 HFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 154 ~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
++++||++|.|++++|++|.+.
T Consensus 175 ~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 175 VFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EEECBTTTTBSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999999999999764
No 86
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=6.3e-29 Score=186.16 Aligned_cols=161 Identities=20% Similarity=0.267 Sum_probs=129.5
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCC-CCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDK-FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
..+.+||+|+|++|+|||||+++|.+.. +...+.+|.+ +....+.+++ +.+.+|||||++.+...+..+++++|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 3568999999999999999999999766 5555666665 3445555555 689999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCC
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLG---NDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMN 162 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 162 (223)
+|+|||++++.++..+..|+..+..... .+.|+++|+||+|+... ...++..+.+. ..+++++++||+++
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKG 171 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence 9999999999999999999888776533 47899999999999643 34566665553 23568999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRMLE 178 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~~ 178 (223)
.|++++|++|.+.+.+
T Consensus 172 ~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 172 EGLQEGVDWLQDQIQT 187 (190)
T ss_dssp BTHHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999887643
No 87
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.96 E-value=1e-29 Score=186.86 Aligned_cols=159 Identities=20% Similarity=0.291 Sum_probs=126.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|+|||||+++|....+.. +.++.+.. ...+.+++ +.+.+|||||++.+...+..+++++|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 467999999999999999999999777653 45666543 34455554 78999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHH-----HHHhCCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY-----AQSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~ 166 (223)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.... ...+..+. +...+++++++||+++.|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 9999999999999988887765532 2578999999999986543 22332222 22345679999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLE 178 (223)
Q Consensus 167 ~~~~~i~~~~~~ 178 (223)
++|++|.+.+.+
T Consensus 158 ~l~~~l~~~i~~ 169 (171)
T 1upt_A 158 EAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 88
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=4.4e-30 Score=187.69 Aligned_cols=157 Identities=18% Similarity=0.292 Sum_probs=121.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||+++|.++.+.. +.+|.+.. ...+..++ +.+.+|||||++.+...+..+++++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999766653 45666633 33344444 78999999999999888888999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
|++++.++..+..|+..+... ...+.|+++|+||+|+.... ..++..+... ..+++++++||+++.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999999888877653 23578999999999996542 2233322211 134579999999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 170 LELSQRMLEK 179 (223)
Q Consensus 170 ~~i~~~~~~~ 179 (223)
++|.+.+.++
T Consensus 154 ~~l~~~i~~~ 163 (164)
T 1r8s_A 154 DWLSNQLRNQ 163 (164)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHhhc
Confidence 9999887543
No 89
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=6.4e-29 Score=186.40 Aligned_cols=157 Identities=24% Similarity=0.311 Sum_probs=127.2
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+++|++|||||||++++.++.+. .+.+|.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 94 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGI 94 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 366789999999999999999999987765 345666554 44566666 7899999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHH------------hCCcEEEec
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS------------VGAVHFHTS 158 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~S 158 (223)
++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.. .+..+++.+.+.. .+++++++|
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 172 (190)
T 1m2o_B 95 VFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCS 172 (190)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECB
T ss_pred EEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeE
Confidence 99999999999999999988876542 35789999999999865 4456666665543 345799999
Q ss_pred CCCCCCHHHHHHHHHHH
Q psy8722 159 AKMNRGIEEMFLELSQR 175 (223)
Q Consensus 159 a~~~~~i~~~~~~i~~~ 175 (223)
|++|.|++++|++|.+.
T Consensus 173 a~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 173 VVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTTBSHHHHHHHHHTT
T ss_pred CCcCCCHHHHHHHHHhh
Confidence 99999999999998754
No 90
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.96 E-value=7.3e-30 Score=191.09 Aligned_cols=161 Identities=23% Similarity=0.302 Sum_probs=129.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+|+|++|+|||||+++|.+..+...+.+|.+.++.. +...+ +.+.+|||||++.+...+..+++++|++|
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 568999999999999999999999888887777888776643 33444 78899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 166 (223)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.... ..++..+... ..+++++++||+++.|++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 9999999999999999888776532 2578999999999986532 2333222221 234578999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEK 179 (223)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (223)
++|++|.+.+.++
T Consensus 174 ~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 174 ITLQWLIQHSKSR 186 (188)
T ss_dssp HHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhh
Confidence 9999999876543
No 91
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=2.5e-28 Score=197.89 Aligned_cols=164 Identities=27% Similarity=0.531 Sum_probs=144.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
...++|+++|++|+|||||++++..+.+...+.++++..+ ...+.+++..+.+.+|||||++.+...+..+++++|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3568999999999999999999998888777777776555 456678888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cEEEec
Q psy8722 93 LVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VHFHTS 158 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 158 (223)
+|||++++.++..+. .|+..+..... ++|+++|+||+|+... +.+..++..+++...++ +++++|
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 999999999999987 68888887654 7899999999998543 56788899999999997 999999
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q psy8722 159 AKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 159 a~~~~~i~~~~~~i~~~~~~ 178 (223)
|++|.|++++|+.|.+.++.
T Consensus 311 a~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHHhc
Confidence 99999999999999988764
No 92
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=3.7e-30 Score=192.14 Aligned_cols=165 Identities=16% Similarity=0.293 Sum_probs=123.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhC--CCCCCCccccceeEEEEEEEE---CCeEEEEEEEeCCCccccccccccccccC
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVED--KFNEKHITTLQASFLNKKLNI---AGKRLNLAIWDTAGQERFHALGPIYYRMS 88 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (223)
+++||+++|++|||||||+++|.+. .+...+.+|.+.++....+.+ ++..+.+.+|||+|++.+...+..+++++
T Consensus 1 ~~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 80 (184)
T 2zej_A 1 NRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQR 80 (184)
T ss_dssp --CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCC
Confidence 3589999999999999999999964 555566788888876655543 23567899999999999988888899999
Q ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC---HHHHHHHHHHhCCc----EEEecCC
Q psy8722 89 NGAVLVYDITDE-DSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM---QEDAEKYAQSVGAV----HFHTSAK 160 (223)
Q Consensus 89 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~ 160 (223)
+++++|||++++ .++..+..|+..+.... ++.|+++|+||+|+...+.+. .+...+++..++++ ++++||+
T Consensus 81 ~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 81 ALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred cEEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 999999999997 58999999999887654 468999999999986554332 23345566667776 9999999
Q ss_pred CCC-CHHHHHHHHHHHHHHH
Q psy8722 161 MNR-GIEEMFLELSQRMLEK 179 (223)
Q Consensus 161 ~~~-~i~~~~~~i~~~~~~~ 179 (223)
++. ++.++++.|.+.+...
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNF 179 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC
T ss_pred cCchhHHHHHHHHHHHHhcc
Confidence 997 8999998888776543
No 93
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=6.4e-29 Score=185.70 Aligned_cols=162 Identities=17% Similarity=0.241 Sum_probs=126.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|+|||||+++|.++.+. .+.+|.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 56899999999999999999999977766 455666543 34445555 78999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 166 (223)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+... ...+++.+... ..+++++++||+++.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999988877642 257899999999998653 23455544432 235689999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEKAQ 181 (223)
Q Consensus 167 ~~~~~i~~~~~~~~~ 181 (223)
++|++|++.+.....
T Consensus 167 ~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 167 QGLEWMMSRLKIRLE 181 (187)
T ss_dssp HHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999988755443
No 94
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=1.1e-31 Score=203.55 Aligned_cols=169 Identities=27% Similarity=0.539 Sum_probs=141.6
Q ss_pred CCCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q psy8722 7 DRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYR 86 (223)
Q Consensus 7 ~~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (223)
+..-...+.+||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++
T Consensus 22 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 100 (204)
T 3th5_A 22 ENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYP 100 (204)
Confidence 3344456789999999999999999999998888777667766554 444566777788999999999999999999999
Q ss_pred cCCEEEEEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCccccc------------cCCHHHHHHHHHHhCC-
Q psy8722 87 MSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQR------------TVMQEDAEKYAQSVGA- 152 (223)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~- 152 (223)
++|++|+|||++++.++..+. .|+..+..... ++|+++|+||+|+.... .+..++..+++..+++
T Consensus 101 ~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 179 (204)
T 3th5_A 101 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 179 (204)
Confidence 999999999999999999987 78888876543 68999999999996543 4556777888888887
Q ss_pred cEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 153 VHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 153 ~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
+++++||++|.|++++|++|++.++
T Consensus 180 ~~~~vSA~~g~gi~~l~~~l~~~il 204 (204)
T 3th5_A 180 KYLECSALTQRGLKTVFDEAIRAVL 204 (204)
Confidence 8999999999999999999987653
No 95
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=8.3e-30 Score=191.54 Aligned_cols=159 Identities=18% Similarity=0.285 Sum_probs=120.8
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+|+|++|+|||||+++|..+.+. .+.+|.+ +....+..++ +.+.+|||||++.+...+..+++++|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 467899999999999999999999977665 3455555 3344455555 7899999999999999988999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 165 (223)
|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.... ..+++.+... ..+++++++||+++.|+
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 99999999999999999888776532 3578999999999986542 2233222211 12346899999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRML 177 (223)
Q Consensus 166 ~~~~~~i~~~~~ 177 (223)
+++|++|++.+.
T Consensus 179 ~~l~~~l~~~i~ 190 (192)
T 2b6h_A 179 YDGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 96
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=7.2e-29 Score=184.54 Aligned_cols=157 Identities=17% Similarity=0.257 Sum_probs=124.8
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+++|++|+|||||+++|.+..+ ..+.++.+... ..+.+++ +.+.+|||||++.+...+..+++++|++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 92 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFV 92 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 46789999999999999999999998777 44456666443 3445555 7899999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 165 (223)
|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+... ...+++.+... ..+++++++||+++.|+
T Consensus 93 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi 170 (181)
T 2h17_A 93 IVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 170 (181)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence 99999999999999999888776542 357899999999998653 23444444332 23457999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 166 EEMFLELSQR 175 (223)
Q Consensus 166 ~~~~~~i~~~ 175 (223)
+++|++|.+.
T Consensus 171 ~~l~~~l~~~ 180 (181)
T 2h17_A 171 CQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 97
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=1.1e-28 Score=183.65 Aligned_cols=161 Identities=19% Similarity=0.239 Sum_probs=125.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
+.+.++|+++|++|||||||+++|.+..+. .+.++.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 87 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDIL 87 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 367899999999999999999999976543 345666643 34455554 7899999999999988888999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 165 (223)
++|||++++.++..+..|+..+... ...+.|+++|+||+|+.... ..++..+... ..+++++++||++|.|+
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 165 (181)
T 1fzq_A 88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGV 165 (181)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCH
Confidence 9999999999999999888776443 23578999999999986543 2333332221 22457999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRMLEK 179 (223)
Q Consensus 166 ~~~~~~i~~~~~~~ 179 (223)
+++|++|.+.+.++
T Consensus 166 ~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 166 QDGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999877654
No 98
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=2.9e-29 Score=187.79 Aligned_cols=160 Identities=22% Similarity=0.272 Sum_probs=126.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|+|||||+++|..+.+.. +.+|.+.. ...+..++ +.+.+|||||++.+...+..+++++|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 678999999999999999999998766643 45666543 34445554 78999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHH-----HHhCCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYA-----QSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 166 (223)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.... ..++..+.. ...+++++++||+++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999999988887765532 2578999999999986543 223332221 2234579999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEK 179 (223)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (223)
++|++|.+.+.++
T Consensus 173 ~l~~~l~~~i~~~ 185 (189)
T 2x77_A 173 EGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988653
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=1.5e-29 Score=190.59 Aligned_cols=163 Identities=22% Similarity=0.290 Sum_probs=123.0
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEE--EE-CCeEEEEEEEeCCCcccccccc---c
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKL--NI-AGKRLNLAIWDTAGQERFHALG---P 82 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~i~D~~G~~~~~~~~---~ 82 (223)
..+..+.+||+++|++|||||||++++.+. +... ++.+.++....+ .+ ++..+.+.+|||+|++.|.... .
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 90 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE 90 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc
Confidence 345678999999999999999999987764 3332 344433333322 23 2556789999999999987776 7
Q ss_pred cccccCCEEEEEEECCCH--HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc-------cccCCHHHHHHHHH----H
Q psy8722 83 IYYRMSNGAVLVYDITDE--DSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK-------QRTVMQEDAEKYAQ----S 149 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------~~~~~~~~~~~~~~----~ 149 (223)
.+++++|++|+|||++++ +++..+..|+..+... .++.|+++|+||+|+.. .+.+..++..+++. .
T Consensus 91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence 899999999999999997 6777777777776543 35799999999999743 34455566777777 6
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 150 VGAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 150 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
++++|+++||++ .|++++|+.|++.+
T Consensus 170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 170 LHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp SCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CCcceEEEEech-hhHHHHHHHHHHHh
Confidence 788999999999 99999999998865
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=2.7e-28 Score=181.36 Aligned_cols=160 Identities=21% Similarity=0.260 Sum_probs=125.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|||||||++++..+.+ ..+.++.+.. ...+.+++ ..+.+|||||++.+...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 6789999999999999999999997766 4455666644 34445555 78999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHH-----hCCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS-----VGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 166 (223)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+... ...+++.+.... .+++++++||+++.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999999888776543 357899999999998653 234444443322 23478999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEK 179 (223)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (223)
++|++|.+.+.++
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 101
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=7.3e-29 Score=194.38 Aligned_cols=166 Identities=20% Similarity=0.298 Sum_probs=128.1
Q ss_pred CCCCeeeEEEEECCC---------CCcHHHHHHHHhh---CCCCCCCcccc-ceeEEEEEEE--------------ECCe
Q psy8722 10 SSSTYSFKVVLLGEG---------CVGKTSVVLRYVE---DKFNEKHITTL-QASFLNKKLN--------------IAGK 62 (223)
Q Consensus 10 ~~~~~~~~I~viG~~---------~~GKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~~~--------------~~~~ 62 (223)
....+.+||+|+|.+ |||||||+++|.. ..+...+.+++ +.++....+. +++.
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 345778999999999 9999999999997 56666666665 4443322221 4567
Q ss_pred EEEEEEEe-----------------------CCCccccccccccccc---------------------cCCEEEEEEECC
Q psy8722 63 RLNLAIWD-----------------------TAGQERFHALGPIYYR---------------------MSNGAVLVYDIT 98 (223)
Q Consensus 63 ~~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~ 98 (223)
.+.+.||| ++|++++...+..+++ ++|++|+|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 78899999 6777777777877877 799999999999
Q ss_pred CH--HHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHH-hCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 99 DE--DSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS-VGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 99 ~~--~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
++ .+++.+..|+..+... ...++|+++|+||+|+...+.+ ++..+++.. .+++++++||+++.|++++|++|.+
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 98 9999999999988765 3457899999999999665543 567777776 4789999999999999999999988
Q ss_pred HHH
Q psy8722 175 RML 177 (223)
Q Consensus 175 ~~~ 177 (223)
.+.
T Consensus 252 ~l~ 254 (255)
T 3c5h_A 252 LID 254 (255)
T ss_dssp HHH
T ss_pred Hhc
Confidence 763
No 102
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=9.1e-28 Score=176.07 Aligned_cols=154 Identities=21% Similarity=0.228 Sum_probs=117.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc------ccccccc-
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA------LGPIYYR- 86 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~- 86 (223)
+.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||++.+.. ....+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 368999999999999999999997776655566666666556666666 5789999999887642 2345554
Q ss_pred -cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCH
Q psy8722 87 -MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 87 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (223)
++|++++|+|+++.+. ...|+..+.. .+.|+++|+||+|+...+.+.. +..+++..++++++++||++|.|+
T Consensus 80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 80 EKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGI 152 (165)
T ss_dssp HCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred CCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence 8999999999998543 3457666654 3689999999999865544432 467788888999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 166 EEMFLELSQRM 176 (223)
Q Consensus 166 ~~~~~~i~~~~ 176 (223)
+++|++|.+.+
T Consensus 153 ~~l~~~l~~~~ 163 (165)
T 2wji_A 153 EELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 103
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=3.7e-27 Score=181.68 Aligned_cols=170 Identities=15% Similarity=0.101 Sum_probs=121.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc---------cccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF---------HALGPI 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~ 83 (223)
.+.++|+|+|++|+|||||+++|.+..+.....+..+.+........++ ..+.+|||||+... ......
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 5679999999999999999999998776544444444455444444555 67899999998321 111233
Q ss_pred ccccCCEEEEEEECCCHHHHHH--HHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHH---HHHHHHHHhC--CcEEE
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEK--VKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQE---DAEKYAQSVG--AVHFH 156 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~~~ 156 (223)
++..+|++|+|||++++.++.. ...|+..+... ..+.|+++|+||+|+...+.+..+ ...+++...+ +++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 4678899999999999877642 23455554432 136899999999999776666554 4566777777 79999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy8722 157 TSAKMNRGIEEMFLELSQRMLEKAQEFDL 185 (223)
Q Consensus 157 ~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~ 185 (223)
+||++|.|++++|++|++.+...+.....
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~~~~~~~ 212 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKNDQAESIL 212 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877655443
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=4.4e-27 Score=173.91 Aligned_cols=156 Identities=16% Similarity=0.208 Sum_probs=122.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++. .+.+|||||++.+...+..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 357899999999999999999999988888777777777776666777774 577999999999999999999999999
Q ss_pred EEEEECCC---HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC---------CcEEEecC
Q psy8722 92 VLVYDITD---EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG---------AVHFHTSA 159 (223)
Q Consensus 92 i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa 159 (223)
|+|+|+++ ..+++.+ ......++|+++|+||+|+... ..++........+ ++++++||
T Consensus 83 i~v~d~~~~~~~~~~~~l-------~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVEAI-------NHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSA 152 (178)
T ss_dssp EEEEETTCCCCHHHHHHH-------HHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred EEEEECCCCCcHHHHHHH-------HHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence 99999988 4433322 2223346899999999998653 2333333332222 47999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~~ 179 (223)
+++.|++++|++|++.+...
T Consensus 153 ~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 153 KTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp SSSHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhhhhh
Confidence 99999999999999877654
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=2.5e-27 Score=190.33 Aligned_cols=165 Identities=19% Similarity=0.345 Sum_probs=131.3
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCC---CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc-----cccccccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFN---EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF-----HALGPIYY 85 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~ 85 (223)
..+||+++|++|||||||+++|.++... ..+.+|.+..+. .+.+.+ .+.+.+|||||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 5689999999999999999999865322 233455555443 444444 478999999999988 67788889
Q ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCccc--ccc----CCHHHHHHHHHHhC---CcE
Q psy8722 86 RMSNGAVLVYDITDEDSFEKVKNWVKELKKML--GNDICLTIAGNKIDLEK--QRT----VMQEDAEKYAQSVG---AVH 154 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~~ 154 (223)
+++|++|+|||++++.+++.+..|...+.... .+++|+++|+||+|+.. .+. +..+++.+++..+| +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999988766555432 35799999999999865 443 45578889999987 689
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHH
Q psy8722 155 FHTSAKMNRGIEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 182 (223)
+++||++ .++.++|..+++.+....+.
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li~~~~~ 185 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLIPNMSN 185 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTCSCHHH
T ss_pred EEeeecC-ChHHHHHHHHHHHHcCCHHH
Confidence 9999999 89999999999887655544
No 106
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.94 E-value=1.7e-27 Score=181.55 Aligned_cols=161 Identities=20% Similarity=0.233 Sum_probs=113.6
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCe-EEEEEEEeCCCcccccc-ccccccccCC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGK-RLNLAIWDTAGQERFHA-LGPIYYRMSN 89 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d 89 (223)
..+.+||+++|++|+|||||+++|....+...+. +++.++.. +.+++. .+.+.+|||||++.+.. .+..+++.+|
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 4568999999999999999999999888776654 44444433 445533 47899999999998887 7788899999
Q ss_pred EEEEEEECCCHH-HHHHHHH-HHHHHHHH--cCCCCeEEEEEeCCCccccccCC--HHHHHHHHH---------------
Q psy8722 90 GAVLVYDITDED-SFEKVKN-WVKELKKM--LGNDICLTIAGNKIDLEKQRTVM--QEDAEKYAQ--------------- 148 (223)
Q Consensus 90 ~~i~v~d~~~~~-s~~~~~~-~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~--------------- 148 (223)
++|+|||+++.. ++..... |...+... ...++|+++|+||+|+....... .+.+.+...
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~ 160 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 160 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence 999999999854 4555544 44444432 24578999999999986543210 011111111
Q ss_pred ------------------Hh--CCcEEEecCCCC------CCHHHHHHHHHHH
Q psy8722 149 ------------------SV--GAVHFHTSAKMN------RGIEEMFLELSQR 175 (223)
Q Consensus 149 ------------------~~--~~~~~~~Sa~~~------~~i~~~~~~i~~~ 175 (223)
.+ +++|+++||++| .|++++|++|.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999875
No 107
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=5.1e-28 Score=193.35 Aligned_cols=164 Identities=20% Similarity=0.233 Sum_probs=125.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCC---CCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc---ccccccccCCE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNE---KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA---LGPIYYRMSNG 90 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~ 90 (223)
||+++|+.|||||||++++..+.++. ...+|.+.++.. ++ ..+.+++|||+|+++|.. .+..|++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887554432 245777776643 22 347899999999999964 35789999999
Q ss_pred EEEEEECCCH--HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc-------ccCCHHHHHHHHHH----hCCcEEEe
Q psy8722 91 AVLVYDITDE--DSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ-------RTVMQEDAEKYAQS----VGAVHFHT 157 (223)
Q Consensus 91 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 157 (223)
+|+|||++++ .+...+..|+..+... .+++|+++++||+|+... +++..++.++++.. ++++|+++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999997 3344444445555443 357999999999999653 34666677777775 67899999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q psy8722 158 SAKMNRGIEEMFLELSQRMLEKAQEFDLAK 187 (223)
Q Consensus 158 Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~ 187 (223)
||++ .+|.++|..+++.+++..+..+.-.
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~~~~le~~L 183 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPELSFLENML 183 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTTHHHHHHHH
T ss_pred ccCC-CcHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9997 6999999999999987766655444
No 108
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=1.8e-26 Score=172.19 Aligned_cols=159 Identities=21% Similarity=0.236 Sum_probs=125.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccc------cccccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH------ALGPIYYR 86 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~ 86 (223)
.+.++|+++|++|||||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||++.+. .....++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 4679999999999999999999997666555566777776666677766 678999999988774 23445554
Q ss_pred --cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCC
Q psy8722 87 --MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG 164 (223)
Q Consensus 87 --~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (223)
.++++++|+|..+ ++....|+..+.. .+.|+++|+||+|+...+.+. ++..+++..++++++++||+++.|
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMG 155 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence 4999999999875 4555667766654 468999999999986655443 456778888899999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRMLEKA 180 (223)
Q Consensus 165 i~~~~~~i~~~~~~~~ 180 (223)
++++|+++.+.+.+..
T Consensus 156 v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 156 IEELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999998876543
No 109
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=2.3e-27 Score=190.59 Aligned_cols=200 Identities=15% Similarity=0.107 Sum_probs=146.0
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEEC-CeEEEEEEEeCCCccccc--------
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIA-GKRLNLAIWDTAGQERFH-------- 78 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~-------- 78 (223)
.+++.+.-.|+++|.+|||||||+|+|++..+. ....+.++..........+ + ..+.||||||+..+.
T Consensus 4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~ 81 (308)
T 3iev_A 4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHS 81 (308)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHH
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHH
Confidence 345678889999999999999999999977765 2334444444444444444 4 678899999986544
Q ss_pred --cccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC--CcE
Q psy8722 79 --ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG--AVH 154 (223)
Q Consensus 79 --~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~ 154 (223)
.....++..+|++++|+|+++..++.....|+..+.. .+.|+++|+||+|+........+...++...++ .++
T Consensus 82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i 158 (308)
T 3iev_A 82 MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI 158 (308)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCE
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeE
Confidence 4456678899999999999998888877777777765 368999999999987444555677777888875 689
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhh----hccccccceeeecCCCCCCCC
Q psy8722 155 FHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELS----RRGSMRRNVVVVEDEDLPTSS 213 (223)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 213 (223)
+.+||++|.|++++|++|.+.+.+....++.+...+.+ ..+..|++......+++||+.
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~ 221 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSI 221 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHC
T ss_pred EEEeCCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCee
Confidence 99999999999999999999886544433333222222 224466667777777777764
No 110
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=7.6e-27 Score=174.39 Aligned_cols=156 Identities=21% Similarity=0.259 Sum_probs=120.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCC-----------ccccccccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG-----------QERFHALGPIY 84 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~ 84 (223)
+||+++|++|+|||||+++|.+..+...+.++.+..... +.+. .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE--EecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 689999999999999999999888877776766554433 3333 588999999 56666666777
Q ss_pred ccc-CCEEEEEEECCCHHHHHHH-HHHHHH---------HHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCc
Q psy8722 85 YRM-SNGAVLVYDITDEDSFEKV-KNWVKE---------LKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV 153 (223)
Q Consensus 85 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~---------~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (223)
++. ++++++|+++.+..++..+ ..|... +......++|+++|+||+|+.... .+...+++..++++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 776 7777777777777788776 556542 222233578999999999986654 56778888888874
Q ss_pred -------EEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 154 -------HFHTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 154 -------~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
++++||++|.|++++|++|.+.+.+.+
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 699999999999999999999886643
No 111
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=4.2e-27 Score=190.65 Aligned_cols=159 Identities=18% Similarity=0.283 Sum_probs=120.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+|+|++|+|||||+++|....+... .+|.+..+ ..+...+ +.+.||||||++.+...+..+++.+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE--EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE--EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4568999999999999999999997776543 35555544 3344444 78999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHH-----hCCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS-----VGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 166 (223)
+|||++++.++..+..|+..+... ...++|+++|+||+|+.... ..+++...... .+++++++||+++.|++
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence 999999999999998877666543 23578999999999986543 23333322211 23469999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLE 178 (223)
Q Consensus 167 ~~~~~i~~~~~~ 178 (223)
++|++|.+.+.+
T Consensus 316 el~~~l~~~l~~ 327 (329)
T 3o47_A 316 EGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 112
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=1e-25 Score=176.57 Aligned_cols=157 Identities=18% Similarity=0.149 Sum_probs=123.2
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc------cccc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG------PIYY 85 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------~~~~ 85 (223)
+.+.++|+++|++|+|||||+|+|++..+.....++.+.+.....+..++ ..+.+|||||...+...+ ..++
T Consensus 2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~ 79 (258)
T 3a1s_A 2 PLHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYL 79 (258)
T ss_dssp -CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence 35789999999999999999999998776655566666666666666655 678999999988776532 4454
Q ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCC
Q psy8722 86 --RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNR 163 (223)
Q Consensus 86 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (223)
..+|++++|+|+++.++.. .|...+.. .++|+++++||+|+...+.+. .+..+++..++++++++||+++.
T Consensus 80 ~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~ 152 (258)
T 3a1s_A 80 LKGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGE 152 (258)
T ss_dssp HHSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCT
T ss_pred hhcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCc
Confidence 5899999999999865432 34444443 378999999999986655544 34678889999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRML 177 (223)
Q Consensus 164 ~i~~~~~~i~~~~~ 177 (223)
|++++|++|.+.+.
T Consensus 153 gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 153 GLEELKEKIVEYAQ 166 (258)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999988754
No 113
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=1.3e-26 Score=171.15 Aligned_cols=155 Identities=21% Similarity=0.232 Sum_probs=116.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc--------cc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG--------PI 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~ 83 (223)
.+.++|+++|++|+|||||+++|.+.... ....++++.++....+.+++. .+.+|||||+..+.... ..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQ 79 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHH
Confidence 35689999999999999999999966542 333456666666777777774 57899999986542211 13
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCC
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNR 163 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (223)
+++.+|++++|+|++++.++. ...|+..+......++|+++|+||+|+..... .++...+.+++++||+++.
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~ 151 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGE 151 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCT
T ss_pred HHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCC
Confidence 578999999999999988776 34687777776656799999999999854311 1122346689999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRML 177 (223)
Q Consensus 164 ~i~~~~~~i~~~~~ 177 (223)
|++++|++|.+.+.
T Consensus 152 gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 152 GVDVLRNHLKQSMG 165 (172)
T ss_dssp THHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999987764
No 114
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.93 E-value=5.1e-25 Score=187.88 Aligned_cols=164 Identities=18% Similarity=0.282 Sum_probs=125.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+|+|.+|||||||+++|....+. .+.+|.+..+ ..+..++ +.+.+|||+|++.+...+..+++++|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeE--EEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999977754 3456666554 3344444 68999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 166 (223)
+|||++++.++..+..|+..+.... ..++|+++|+||+|+.... ..++..+... ..+++++++||++|.|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 9999999999999998888775533 2578999999999986532 2333322221 123359999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEKAQEF 183 (223)
Q Consensus 167 ~~~~~i~~~~~~~~~~~ 183 (223)
++|++|.+.+.......
T Consensus 473 ~l~~~l~~~~~~~~~~~ 489 (497)
T 3lvq_E 473 EGLTWLTSNYKSKLAAA 489 (497)
T ss_dssp HHHHHHHHHCC------
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 99999998876554443
No 115
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.93 E-value=7e-26 Score=169.99 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=107.2
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCC----------cccccccc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG----------QERFHALG 81 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 81 (223)
....++|+|+|++|+|||||+++|.+..+.....++.+.+........++ .+.+||||| ++.+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 35689999999999999999999998775554445554444333344444 588999999 66666667
Q ss_pred ccccccC---CEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCH--HHHHH-HHHHhCCcEE
Q psy8722 82 PIYYRMS---NGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQ--EDAEK-YAQSVGAVHF 155 (223)
Q Consensus 82 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~-~~~~~~~~~~ 155 (223)
..+++.+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|+...+.+.. +++.+ +....+.+++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI 172 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence 7777777 9999999999876665532 2222222 4689999999999966543321 22222 2223356899
Q ss_pred EecCCCCCCHHHHHHHHHHHH
Q psy8722 156 HTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 156 ~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
++||+++.|++++|++|.+.+
T Consensus 173 ~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 173 LFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEccCCCCHHHHHHHHHHHh
Confidence 999999999999999998765
No 116
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.93 E-value=8.8e-26 Score=164.14 Aligned_cols=150 Identities=17% Similarity=0.179 Sum_probs=105.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc-------cccccccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF-------HALGPIYYRM 87 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~ 87 (223)
.||+++|++|+|||||+++|.+..+. ....++.+.+.....+..++. .+.+|||||+..+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999976643 333455555565666666664 6889999998763 3334557889
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHH
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIE 166 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 166 (223)
+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.... ++..+++ .+++ +++++||+++.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999998533322 112222222 368999999999986542 2334455 6677 89999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 167 EMFLELSQRM 176 (223)
Q Consensus 167 ~~~~~i~~~~ 176 (223)
++|++|.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998764
No 117
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=4.5e-26 Score=195.84 Aligned_cols=165 Identities=23% Similarity=0.341 Sum_probs=126.6
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEE------E--EECCeEEEEEEEeCCCccccccccc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKK------L--NIAGKRLNLAIWDTAGQERFHALGP 82 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~i~D~~G~~~~~~~~~ 82 (223)
...+.+||+++|.+|||||||+++|.+..+...+.+|.+.++.... + ..++..+.+.+||+||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3567899999999999999999999988888777888888775442 1 1233357899999999999999999
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCC
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMN 162 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (223)
.+++++|++|+|+|+++. +.+..|+..+.... ++.|+++|+||+|+...+.+..++.++++...+.+++++||+++
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 999999999999999765 55677888888765 36899999999999887788888899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRMLEK 179 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~~~ 179 (223)
.|++++++.|.+.+...
T Consensus 193 ~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLHP 209 (535)
T ss_dssp --CTTHHHHHHHHHTCT
T ss_pred cCHHHHHHHHHHHHhcc
Confidence 99999999999987654
No 118
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=3.1e-25 Score=173.67 Aligned_cols=151 Identities=16% Similarity=0.141 Sum_probs=119.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc----------cccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA----------LGPIYY 85 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~ 85 (223)
.+|+++|++|+|||||+|+|++........++.+.+.....+.+++. .+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 38999999999999999999987776666788888877777777774 788999999877654 334556
Q ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCC
Q psy8722 86 --RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNR 163 (223)
Q Consensus 86 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (223)
.++|++|+|+|+++.+....+..|+ ...++|+++|+||+|+...+... .....++..++++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l------~~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQL------FELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHH------TTSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHH------HHcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCC
Confidence 8899999999999876554443332 23378999999999986544332 23556788889999999999999
Q ss_pred CHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQR 175 (223)
Q Consensus 164 ~i~~~~~~i~~~ 175 (223)
|++++|++|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999764
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=4.1e-25 Score=174.27 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=116.0
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc------ccccccc-
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA------LGPIYYR- 86 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~- 86 (223)
..++|+++|++|+|||||+|+|++........++.+.+.... .+.. ...+.+|||||+..+.. ....++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~--~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSG--LVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEE--ECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEE--EEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 468999999999999999999997665555455555443333 3343 46789999999887752 3455554
Q ss_pred -cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCH
Q psy8722 87 -MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 87 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (223)
.+|++++|+|+++.+.. ..|...+.. .++|+++++||+|+...+.+. .+..+++..++++++++||++|.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 69999999999886543 345555544 368999999999986554443 4567788889999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 166 EEMFLELSQRM 176 (223)
Q Consensus 166 ~~~~~~i~~~~ 176 (223)
+++|++|.+.+
T Consensus 152 ~el~~~i~~~~ 162 (272)
T 3b1v_A 152 DQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 120
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.92 E-value=1.2e-24 Score=163.04 Aligned_cols=159 Identities=21% Similarity=0.182 Sum_probs=111.9
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCC----------cccccc
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG----------QERFHA 79 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~ 79 (223)
.+....++|+|+|++|+|||||+++|.+.... ...++.+.+........+. .+.+||||| ++.+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHH
Confidence 34467889999999999999999999976633 2234443333333333333 477999999 555666
Q ss_pred ccccccccC---CEEEEEEECCCHHH--HHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc--cCCHHHHHHHHHHhC-
Q psy8722 80 LGPIYYRMS---NGAVLVYDITDEDS--FEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR--TVMQEDAEKYAQSVG- 151 (223)
Q Consensus 80 ~~~~~~~~~---d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~- 151 (223)
.+..+++.+ +++++|+|+.+..+ ...+..|+... +.|+++|+||+|+.... ....++..+++...+
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE 167 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence 666676665 99999999987533 33333444332 58999999999985432 233355566666544
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 152 AVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 152 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
++++++||+++.|++++|++|.+.+.+
T Consensus 168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 168 YTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999999987743
No 121
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=2.7e-24 Score=169.82 Aligned_cols=157 Identities=20% Similarity=0.149 Sum_probs=122.4
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA------LGPIYY-- 85 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~-- 85 (223)
+.++|+++|++|+|||||+++|++..+.....++.+.+.....+.+++. .+.+|||||...+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 4689999999999999999999987776667778888877777777774 588999999887665 344454
Q ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCH
Q psy8722 86 RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (223)
.++|++++|+|+++.. ....|...+... ...|+++++||+|+...+.... ....+...++++++++||++|.|+
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTH
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCH
Confidence 6899999999998853 222333333332 1289999999999865443332 267788889999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRMLE 178 (223)
Q Consensus 166 ~~~~~~i~~~~~~ 178 (223)
.++|+.+.+.+..
T Consensus 154 ~~l~~~i~~~~~~ 166 (271)
T 3k53_A 154 EELKRMIALMAEG 166 (271)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887643
No 122
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.91 E-value=5.8e-25 Score=173.85 Aligned_cols=155 Identities=14% Similarity=0.190 Sum_probs=119.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc----------ccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL----------GPI 83 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~ 83 (223)
++++|+++|++|+|||||+|+|++..+.....++++.+.....+...+ ..+.+|||||...+... ...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 468999999999999999999998777666677777777777777666 45778999998876632 122
Q ss_pred c--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC
Q psy8722 84 Y--YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM 161 (223)
Q Consensus 84 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (223)
+ ...+|++|+|+|+++.+....+.. .+... ++|+++|+||+|+...+.. ......++..++++++++||++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~---~l~~~---~~p~ivv~NK~Dl~~~~~~-~~~~~~l~~~lg~~~i~~SA~~ 152 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTL---QLLEL---GIPCIVALNMLDIAEKQNI-RIEIDALSARLGCPVIPLVSTR 152 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHH---HHHHH---TCCEEEEEECHHHHHHTTE-EECHHHHHHHHTSCEEECCCGG
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHH---HHHhc---CCCEEEEEECccchhhhhH-HHHHHHHHHhcCCCEEEEEcCC
Confidence 2 268999999999998665544433 33333 6899999999998654332 1235677888899999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRML 177 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~~ 177 (223)
|.|++++|++|.+.+.
T Consensus 153 g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 153 GRGIEALKLAIDRYKA 168 (274)
T ss_dssp GHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999987653
No 123
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=5.2e-23 Score=168.48 Aligned_cols=167 Identities=17% Similarity=0.160 Sum_probs=126.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc---------cccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA---------LGPI 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~ 83 (223)
...++|+++|++|+|||||+++|.+........+..+.......+..++ ..+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4678999999999999999999997665433334444444444444454 5789999999754321 1123
Q ss_pred ccccCCEEEEEEECCCHH--HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC
Q psy8722 84 YYRMSNGAVLVYDITDED--SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM 161 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (223)
+...+|++++|+|+++.. ++.....|+..+..... +.|+++|+||+|+..... .++..+++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence 445799999999999876 67777888888877654 689999999999865443 2456667777889999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRMLEKAQEFD 184 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~~~~~~ 184 (223)
|+|+++++++|.+.+........
T Consensus 320 g~gi~~l~~~i~~~l~~~~~~~~ 342 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPLAEKVA 342 (357)
T ss_dssp TBTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999876655543
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=3.9e-25 Score=168.94 Aligned_cols=145 Identities=18% Similarity=0.254 Sum_probs=107.3
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCC---CCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNE---KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (223)
...+.++|+++|++|+|||||+++|....+.. .+.++.+.++ ....+.+|||||++.+...+..+++.
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~ 78 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKT 78 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHh
Confidence 35678999999999999999999999777654 2344443332 33568999999999998888888877
Q ss_pred ----CCEEEEEEECC-CHHHHHHHHHHHHHHHHH----cCCCCeEEEEEeCCCccccccCC------HHHHHHHHHHhCC
Q psy8722 88 ----SNGAVLVYDIT-DEDSFEKVKNWVKELKKM----LGNDICLTIAGNKIDLEKQRTVM------QEDAEKYAQSVGA 152 (223)
Q Consensus 88 ----~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~ 152 (223)
+|++|+|+|++ ++.++..+..|+..+... ...++|+++|+||+|+...+.+. .++..+++...+.
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 158 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK 158 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999 888898888888777654 34579999999999997665433 4556677777778
Q ss_pred cEEEecCCCCCC
Q psy8722 153 VHFHTSAKMNRG 164 (223)
Q Consensus 153 ~~~~~Sa~~~~~ 164 (223)
+++++|++++.+
T Consensus 159 ~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 159 SLNEVERKINEE 170 (218)
T ss_dssp HHHC--------
T ss_pred cccccccccccc
Confidence 899999998865
No 125
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.90 E-value=4e-25 Score=176.78 Aligned_cols=191 Identities=21% Similarity=0.175 Sum_probs=124.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCccc--------ccccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER--------FHALGPI 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~ 83 (223)
.+..+|+++|.+|+|||||+|+|++..+. ....+.++.+........++ ..+.||||||... +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHH
Confidence 46678999999999999999999977664 23334344433333333344 6789999999765 3344456
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHH-HHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHh-C-CcEEEecCC
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWV-KELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV-G-AVHFHTSAK 160 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~ 160 (223)
+++.+|++++|+|++++.+.. ..|+ ..+.... .+.|+++|+||+|+..... ...+.+..+ + .+++++||+
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~ 155 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSAL 155 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTT
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCC
Confidence 789999999999998864433 3443 3444332 4689999999999865432 022233332 3 368999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhh-hhh----hhccccccceeeecCCCCCCC
Q psy8722 161 MNRGIEEMFLELSQRMLEKAQEFDLAKA-SEL----SRRGSMRRNVVVVEDEDLPTS 212 (223)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~ 212 (223)
++.|++++++.|.+.+.+....++.... .+. ...+..|++......+++|++
T Consensus 156 ~g~gv~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~ 212 (301)
T 1wf3_A 156 DERQVAELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYA 212 (301)
T ss_dssp CHHHHHHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred CCCCHHHHHHHHHHhcccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCce
Confidence 9999999999998876443322222211 111 122445666666666666664
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=5.8e-24 Score=178.48 Aligned_cols=163 Identities=16% Similarity=0.138 Sum_probs=117.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCc----------ccccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ----------ERFHALG 81 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~ 81 (223)
+..+||+++|.+|+|||||+|+|++.... ....++++.+.....+..++. .+.+|||||+ +.|....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 45799999999999999999999976653 445566777766667777774 5889999997 3333332
Q ss_pred c-cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHH-HHHHH----hCCcEE
Q psy8722 82 P-IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAE-KYAQS----VGAVHF 155 (223)
Q Consensus 82 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~ 155 (223)
. .+++.+|++++|+|++++.+++.. .|...+.. .+.|+++|+||+|+...+....++.. ++... .+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 2 467889999999999998877665 46666554 46899999999999765554333332 22232 357999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHH
Q psy8722 156 HTSAKMNRGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 156 ~~Sa~~~~~i~~~~~~i~~~~~~~~~ 181 (223)
++||++|.|++++|+.+.+.+.....
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~~~ 352 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENHSL 352 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred EEecccCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999998876543
No 127
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.90 E-value=1.8e-23 Score=176.32 Aligned_cols=157 Identities=13% Similarity=0.101 Sum_probs=101.4
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCC-CCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDK-FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG--------PIY 84 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 84 (223)
..++|+++|++|+|||||+|+|.+.. ......++++.+.....+.+++ +.+.+|||||...+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 46899999999999999999999664 3345567777777777777877 578999999987655433 346
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG 164 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (223)
+..+|++++|+|++++.++..+..+...+.... ++|+++|+||+|+...... ...++......+++++||+++.|
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCC
Confidence 799999999999999887754444433333332 6899999999998665432 22334443346899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRML 177 (223)
Q Consensus 165 i~~~~~~i~~~~~ 177 (223)
++++|++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998876
No 128
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.90 E-value=3.1e-24 Score=164.41 Aligned_cols=164 Identities=12% Similarity=0.081 Sum_probs=108.2
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCC--CCCCccccceeEEEEEEEEC-CeEEEEEEEeCCCc----------ccc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKF--NEKHITTLQASFLNKKLNIA-GKRLNLAIWDTAGQ----------ERF 77 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~----------~~~ 77 (223)
+....++|+|+|.+|+|||||+++|++... .....++.+..... ..+. .....+.||||||. +.+
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 102 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINY--FSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW 102 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEE--EEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEE--EEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence 345689999999999999999999997652 22333333333322 2232 22357889999994 333
Q ss_pred cccccccccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC--HHHHHHHHHH---
Q psy8722 78 HALGPIYYRM---SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM--QEDAEKYAQS--- 149 (223)
Q Consensus 78 ~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~--- 149 (223)
......++.. +|++++|+|+.+..+. ....|+..+.. .++|+++|+||+|+....... .+...+....
T Consensus 103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 103 EQLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 4444555555 7889999999875332 22334444443 468999999999986543221 1222233333
Q ss_pred ----hCCcEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 150 ----VGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 150 ----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
.+.+++++||+++.|++++|++|.+.+....
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 4568999999999999999999998876553
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=2e-23 Score=176.16 Aligned_cols=167 Identities=17% Similarity=0.168 Sum_probs=123.9
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCC-CCCCCccccceeEEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDK-FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG----------QERFHAL 80 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~ 80 (223)
....++|+++|.+|+|||||+++|.+.. ......++++.+.....+..++. .+.+||||| ++.+...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 4567999999999999999999999554 34455566676666666777774 688999999 5556555
Q ss_pred cc-cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHh-----CCcE
Q psy8722 81 GP-IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV-----GAVH 154 (223)
Q Consensus 81 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~ 154 (223)
.. .+++.+|++|+|+|+++..+ +....|...+.. .++|+++|+||+|+...+....++..+.+... ++++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 345 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence 44 36789999999999998543 223345555544 46899999999999876666667777666655 5799
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy8722 155 FHTSAKMNRGIEEMFLELSQRMLEKAQEFD 184 (223)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~ 184 (223)
+++||++|.|++++|+.+.+.+........
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~ 375 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASENHSLRVQ 375 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHTCCCC
T ss_pred EEEcCCCCcCHHHHHHHHHHHHHHhcccCC
Confidence 999999999999999999998876654433
No 130
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.89 E-value=5.6e-24 Score=176.80 Aligned_cols=159 Identities=19% Similarity=0.236 Sum_probs=116.4
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc-------
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG------- 81 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------- 81 (223)
.+..+.++|+|+|+.|+|||||+++|++..+. ....++++.+.....+.+.+. ..+.+|||||++.+....
T Consensus 29 ~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~ 107 (423)
T 3qq5_A 29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKA 107 (423)
T ss_dssp ---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHH
Confidence 34567899999999999999999999976653 344555566666666666654 278899999998776553
Q ss_pred ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC
Q psy8722 82 PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM 161 (223)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (223)
..++..+|++|+|+|+... .....|+..+... ++|+++|+||+|+...... +...+++..++++++++||++
T Consensus 108 ~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAkt 179 (423)
T 3qq5_A 108 RRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQ 179 (423)
T ss_dssp HHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCC
T ss_pred HHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCC
Confidence 3378899999999999433 2345566666654 6899999999999766543 666677777889999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRML 177 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~~ 177 (223)
+.|++++|++|.+.+.
T Consensus 180 g~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 180 KKGFDDIGKTISEILP 195 (423)
T ss_dssp TTSTTTHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHhhh
Confidence 9999999999998773
No 131
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.88 E-value=3.8e-23 Score=165.48 Aligned_cols=193 Identities=13% Similarity=0.134 Sum_probs=124.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcc---------ccccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE---------RFHALGP 82 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~ 82 (223)
.+..+|+++|++|+|||||+|+|++..+. ....+.++.+.....+..++ ..+.+|||||.. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 45668999999999999999999977653 22233333332223333444 578899999986 2344456
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCC
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKM 161 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 161 (223)
.++..+|++++|+|+.+ +.....|+... ....+.|+++++||+|+........+...++...+++ .++.+||++
T Consensus 84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~--l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR---WTPDDEMVLNK--LREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp SCCCCEEEEEEEEETTC---CCHHHHHHHHH--HHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HHHhcCCEEEEEEeCCC---CCHHHHHHHHH--HHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 77899999999999976 32333333222 2234689999999999865222223445556666676 689999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhhhh----hccccccceeeecCCCCCCC
Q psy8722 162 NRGIEEMFLELSQRMLEKAQEFDLAKASELS----RRGSMRRNVVVVEDEDLPTS 212 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 212 (223)
+.|++++++.+...+.+....++.....+.+ ..+..|++......+++|++
T Consensus 159 g~~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~ 213 (301)
T 1ega_A 159 GLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYS 213 (301)
T ss_dssp TTTHHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTT
T ss_pred CCCHHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeE
Confidence 9999999999987654332222111111111 12334556666666666665
No 132
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.87 E-value=1.4e-22 Score=164.39 Aligned_cols=157 Identities=19% Similarity=0.217 Sum_probs=116.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc----ccccccccccc---cCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE----RFHALGPIYYR---MSN 89 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~---~~d 89 (223)
+|+|+|.+|||||||+++|+.........+.++.......+.+++. ..+.+|||||.. .+..+...+++ .++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 6889999999999999999965433222333333333334445432 468899999953 33344455544 499
Q ss_pred EEEEEEECCC---HHHHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhC--CcEEEecCCCC
Q psy8722 90 GAVLVYDITD---EDSFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG--AVHFHTSAKMN 162 (223)
Q Consensus 90 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~ 162 (223)
++|+|+|+++ +.+++.+..|+..+..... .++|+++|+||+|+.... +..+++...+. .+++++||+++
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg 314 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR 314 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCC
Confidence 9999999998 7889999999999887642 478999999999985432 44566667766 68999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRMLE 178 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~~ 178 (223)
.|+++++++|.+.+.+
T Consensus 315 ~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 315 EGLRELLFEVANQLEN 330 (342)
T ss_dssp STTHHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999887743
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.87 E-value=4.3e-22 Score=168.13 Aligned_cols=153 Identities=18% Similarity=0.251 Sum_probs=117.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc-ccccc--------cccc
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE-RFHAL--------GPIY 84 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~~--------~~~~ 84 (223)
.++|+++|.+|+|||||+|+|.+... .....++++.++....+.+++ ..+.+|||||.. .+... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 48999999999999999999996543 345567777777777777877 568899999987 55432 2346
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG 164 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (223)
+..+|++|+|+|++++.+++... ++..+ .+.|+++|+||+|+... +..++..+++. .+.+++++||+++.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence 78999999999999887765543 22222 36899999999999643 34455544432 446899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRMLE 178 (223)
Q Consensus 165 i~~~~~~i~~~~~~ 178 (223)
+++++++|.+.+..
T Consensus 392 i~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 392 LEKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 134
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=1e-21 Score=165.02 Aligned_cols=151 Identities=17% Similarity=0.226 Sum_probs=104.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc---------cccccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF---------HALGPIYY 85 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~ 85 (223)
.+|+++|.+|||||||+|+|++.... ....++++.+.....+.+++. .+.+|||||.+.. ......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 37999999999999999999966543 455677777777777778875 5789999997642 23345678
Q ss_pred ccCCEEEEEEECCCHHHHHH--HHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHH-HHHHHHhCC-cEEEecCCC
Q psy8722 86 RMSNGAVLVYDITDEDSFEK--VKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDA-EKYAQSVGA-VHFHTSAKM 161 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~ 161 (223)
+++|++++|+|+.++.+... +..|+. . .++|+++|+||+|+.... ..+. .++. .+++ +++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~---~~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLR---K---STVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHH---H---HTCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEeccC
Confidence 99999999999987544332 333332 2 258999999999975321 1222 3443 5676 789999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRMLE 178 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~~~ 178 (223)
|.|+.++++++.+.+.+
T Consensus 150 g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 150 NINLDTMLETIIKKLEE 166 (439)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999887753
No 135
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=3.4e-21 Score=149.31 Aligned_cols=167 Identities=12% Similarity=0.097 Sum_probs=106.6
Q ss_pred CCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCcc--ccceeEEEEEEEECCeEEEEEEEeCCCcc----------
Q psy8722 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHIT--TLQASFLNKKLNIAGKRLNLAIWDTAGQE---------- 75 (223)
Q Consensus 8 ~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------- 75 (223)
...+....++|+|+|++|+|||||+|+|++..+.....+ +.+.......+.+++ ..+.||||||..
T Consensus 22 ~~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~ 99 (239)
T 3lxx_A 22 RQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETS 99 (239)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHH
T ss_pred cCCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHH
Confidence 444557789999999999999999999998777655444 455555555666776 467899999943
Q ss_pred -ccccccccccccCCEEEEEEECCCHHH--HHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC------HHHHHHH
Q psy8722 76 -RFHALGPIYYRMSNGAVLVYDITDEDS--FEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM------QEDAEKY 146 (223)
Q Consensus 76 -~~~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~ 146 (223)
.+......+++.+|++|+|+|+++... ...+..+...+... ...|+++|+||+|+.....+. .+.++++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l 177 (239)
T 3lxx_A 100 KEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDL 177 (239)
T ss_dssp HHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHH
Confidence 233334455678899999999875332 22233333322222 135999999999985543332 2467788
Q ss_pred HHHhCCcEEEecCCCC-----CCHHHHHHHHHHHHHH
Q psy8722 147 AQSVGAVHFHTSAKMN-----RGIEEMFLELSQRMLE 178 (223)
Q Consensus 147 ~~~~~~~~~~~Sa~~~-----~~i~~~~~~i~~~~~~ 178 (223)
+...+..++..+...+ .++.++|+.+...+.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 178 MDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 8888988888776644 5778888777666543
No 136
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.87 E-value=3.3e-21 Score=160.18 Aligned_cols=163 Identities=15% Similarity=0.103 Sum_probs=114.7
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEE----------------EEEEE---CCeEEEEEEEeC
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLN----------------KKLNI---AGKRLNLAIWDT 71 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~----------------~~~~~---~~~~~~~~i~D~ 71 (223)
...+.++|+++|++++|||||+++|++.......... ...... ..... ......+.+|||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 4567899999999999999999999864433211000 000000 00000 122367899999
Q ss_pred CCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC--CHHHHHHHHHH
Q psy8722 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV--MQEDAEKYAQS 149 (223)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~ 149 (223)
||++.|...+...+..+|++|+|+|+++..++.....|+..+.... ..|+++++||+|+.+.... ..++..++...
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 9999999888889999999999999999876777777777766553 2489999999998654321 11223333322
Q ss_pred h---CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 150 V---GAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 150 ~---~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
. +++++++||++|.|++++++.|.+.+
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 2 56899999999999999999888754
No 137
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.87 E-value=2.9e-21 Score=157.12 Aligned_cols=123 Identities=14% Similarity=0.202 Sum_probs=100.2
Q ss_pred EEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHc-CCCCeE
Q psy8722 55 KKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITD----------EDSFEKVKNWVKELKKML-GNDICL 123 (223)
Q Consensus 55 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ 123 (223)
..+.+++ +.+.+|||+|++.++..|..++++++++|+|||+++ ..++.....|+..+.... ..++|+
T Consensus 186 ~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi 263 (353)
T 1cip_A 186 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 263 (353)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence 3344554 789999999999999999999999999999999999 456777777777766532 257999
Q ss_pred EEEEeCCCccccc---------------cCCHHHHHHHHH-----------HhCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 124 TIAGNKIDLEKQR---------------TVMQEDAEKYAQ-----------SVGAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 124 ivv~nK~Dl~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
+|++||.|+...+ .+..+++.+++. ..++.+++|||+++.||.++|+++.+.++
T Consensus 264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 9999999985332 356788888876 34568899999999999999999999887
Q ss_pred HH
Q psy8722 178 EK 179 (223)
Q Consensus 178 ~~ 179 (223)
..
T Consensus 344 ~~ 345 (353)
T 1cip_A 344 KN 345 (353)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 138
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.87 E-value=1.4e-21 Score=153.23 Aligned_cols=165 Identities=15% Similarity=0.176 Sum_probs=108.7
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCC-CCCCCccc-cceeEEEEEEEECCeEEEEEEEeCCCccccccccc------
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDK-FNEKHITT-LQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGP------ 82 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~------ 82 (223)
+..+.++|+|+|++|||||||+++|++.. +.....++ ++.........+++ ..+.||||||+..+.....
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence 34568999999999999999999999665 44444444 45555555556666 4688999999876543222
Q ss_pred -----cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCC--CCeEEEEEe-CCCccccccCCH-------HHHHHHH
Q psy8722 83 -----IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN--DICLTIAGN-KIDLEKQRTVMQ-------EDAEKYA 147 (223)
Q Consensus 83 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivv~n-K~Dl~~~~~~~~-------~~~~~~~ 147 (223)
.+++.+|++|+|+|+.+.... ...++..+....+. ..|.++++| |+|+.... +.. +++.+++
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~--~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~ 172 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQ--DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLV 172 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHH--HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHH--HHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHH
Confidence 256889999999999862221 11122333333221 346666665 99986431 111 2244466
Q ss_pred HHhCCc---E--EEecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 148 QSVGAV---H--FHTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 148 ~~~~~~---~--~~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
..++.. + +.+||+++.|++++|++|.+.+....
T Consensus 173 ~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 173 AACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 666543 2 67999999999999999999887643
No 139
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.86 E-value=1.8e-21 Score=164.89 Aligned_cols=157 Identities=15% Similarity=0.103 Sum_probs=112.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCC-------CCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDK-------FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIY 84 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 84 (223)
..+.++|+++|+.++|||||+++|++.. +..+..++++.+.....+.+++ ..+.+|||||+++|...+...
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence 3568999999999999999999999655 3334444555555444555666 678899999999998888888
Q ss_pred cccCCEEEEEEECCC---HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc--CCHHHHHHHHHHh----CCcEE
Q psy8722 85 YRMSNGAVLVYDITD---EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT--VMQEDAEKYAQSV----GAVHF 155 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~----~~~~~ 155 (223)
+..+|++|+|+|+++ +++.+.+. .+.. .++|+++++||+|+.+... ...+++.+++... +.+++
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii 166 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII 166 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred HhhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence 999999999999998 44444432 2332 2578899999999864321 1234455566555 56899
Q ss_pred EecCCCCCCHHHHHHHHHHHHH
Q psy8722 156 HTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 156 ~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
.+||++|.|+++++++|.+.+.
T Consensus 167 ~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 167 PISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHhhc
Confidence 9999999999999999888764
No 140
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.86 E-value=3.4e-22 Score=168.00 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=106.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG--------PIY 84 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 84 (223)
..++|+++|++|+|||||+|+|.+... .....++++.++....+.+++ ..+.+|||||...+.... ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 468999999999999999999996543 244456777776666777777 567899999976544332 336
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG 164 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (223)
+..+|++++|+|++++.+... ..|+..+. ..|+++|+||+|+....... ...++. .+.+++++||+++.|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence 788999999999998765544 34444442 36999999999986654432 111111 356899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRMLEK 179 (223)
Q Consensus 165 i~~~~~~i~~~~~~~ 179 (223)
+++++++|.+.+...
T Consensus 371 i~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 371 IDSLETAILEIVQTG 385 (462)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887543
No 141
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.86 E-value=2.1e-21 Score=167.56 Aligned_cols=158 Identities=20% Similarity=0.206 Sum_probs=111.7
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCC--CCC-----CC------ccccceeEE--EEEEEE---CCeEEEEEEEeCCCcc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDK--FNE-----KH------ITTLQASFL--NKKLNI---AGKRLNLAIWDTAGQE 75 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~-----~~------~~~~~~~~~--~~~~~~---~~~~~~~~i~D~~G~~ 75 (223)
+-.||+++|+.++|||||+++|+... ... .. ....|.++. ...+.+ ++..+.+.||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46799999999999999999998421 111 00 011122222 222222 4567899999999999
Q ss_pred ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC---
Q psy8722 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA--- 152 (223)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--- 152 (223)
+|...+..++..+|++|+|+|+++..++.....|..... .++|+++++||+|+...+ ..+...++...+++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 999888889999999999999999777777777766554 368999999999996543 23445566666776
Q ss_pred cEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 153 VHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 153 ~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
.++.+||++|.|+++++++|.+.+.
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred eEEEeecccCCCchhHHHHHhhcCC
Confidence 4899999999999999999887664
No 142
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.86 E-value=3.9e-21 Score=154.34 Aligned_cols=124 Identities=13% Similarity=0.155 Sum_probs=97.5
Q ss_pred EEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHc-CCCCe
Q psy8722 54 NKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDIT----------DEDSFEKVKNWVKELKKML-GNDIC 122 (223)
Q Consensus 54 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p 122 (223)
...+.+++ +.+++||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+.... ..++|
T Consensus 159 ~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~ 236 (327)
T 3ohm_A 159 EYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS 236 (327)
T ss_dssp EEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCE
T ss_pred EEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCce
Confidence 33444555 78999999999999999999999999999999765 4556666666666554332 25799
Q ss_pred EEEEEeCCCccccc----------------cCCHHHHHHHHH----------HhCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 123 LTIAGNKIDLEKQR----------------TVMQEDAEKYAQ----------SVGAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 123 ~ivv~nK~Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
+++++||+|+...+ ....+++.+++. ..++.++++||+++.||..+|+.+.+.+
T Consensus 237 iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~I 316 (327)
T 3ohm_A 237 VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 316 (327)
T ss_dssp EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence 99999999985543 456778877743 3456789999999999999999999998
Q ss_pred HHH
Q psy8722 177 LEK 179 (223)
Q Consensus 177 ~~~ 179 (223)
++.
T Consensus 317 l~~ 319 (327)
T 3ohm_A 317 LQL 319 (327)
T ss_dssp HHT
T ss_pred HHH
Confidence 865
No 143
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.86 E-value=5.4e-21 Score=156.41 Aligned_cols=165 Identities=18% Similarity=0.073 Sum_probs=112.2
Q ss_pred eeeE-EEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc---------ccccccc
Q psy8722 14 YSFK-VVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER---------FHALGPI 83 (223)
Q Consensus 14 ~~~~-I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~ 83 (223)
..++ |+++|++|+|||||+|+|.+........++.+.+.....+.+++ ..+.+|||+|... +.... .
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~ 253 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-S 253 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-H
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-H
Confidence 3455 99999999999999999997766555556666666677778887 4678999999622 22222 2
Q ss_pred ccccCCEEEEEEECCCHH--HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC-CHHHHHHHHHHh---CCcEEEe
Q psy8722 84 YYRMSNGAVLVYDITDED--SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV-MQEDAEKYAQSV---GAVHFHT 157 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~~ 157 (223)
.+..+|++++|+|++++. ....+..|...+......+.|+++|+||+|+...... ..+.+..++..+ +.+++.+
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 333 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPI 333 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 468899999999999876 5666767777776654457899999999998543210 011233334554 2368999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHH
Q psy8722 158 SAKMNRGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 158 Sa~~~~~i~~~~~~i~~~~~~~~~ 181 (223)
||+++.|++++++.|.+.+.....
T Consensus 334 SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 334 SALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred ECCCCcCHHHHHHHHHHHhcccCC
Confidence 999999999999999887765433
No 144
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.86 E-value=1.5e-21 Score=163.68 Aligned_cols=159 Identities=16% Similarity=0.082 Sum_probs=108.8
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCC-------------------------------CCCCCccccceeEEEEEEE
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDK-------------------------------FNEKHITTLQASFLNKKLN 58 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 58 (223)
.+....+||+++|++++|||||+++|+... ...+..++++.+.....+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 345678999999999999999999995321 1112224455555555555
Q ss_pred ECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHH---HHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccc
Q psy8722 59 IAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDS---FEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEK 134 (223)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 134 (223)
.++ ..+.||||||+++|...+...+..+|++|+|+|+++... |+...++...+......++| +++++||+|+..
T Consensus 92 ~~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 92 TEK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 169 (439)
T ss_pred cCC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcc
Confidence 555 578999999999998888888999999999999998532 11111222222222223566 999999999843
Q ss_pred c------ccCCHHHHHHHHHHhC------CcEEEecCCCCCCHHHHHH
Q psy8722 135 Q------RTVMQEDAEKYAQSVG------AVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 135 ~------~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~ 170 (223)
. .....++...++..++ ++++.+||++|.|+.++++
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 2 1112244455555555 4699999999999999765
No 145
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.86 E-value=3.7e-21 Score=165.76 Aligned_cols=160 Identities=21% Similarity=0.269 Sum_probs=115.2
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhC--CCCCC-------------CccccceeEEEEEEEE---CCeEEEEEEEeCCC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVED--KFNEK-------------HITTLQASFLNKKLNI---AGKRLNLAIWDTAG 73 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~-------------~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G 73 (223)
.++..||+++|+.++|||||+++|+.. .+... ...+.+.......+.+ ++..+.+.||||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 356789999999999999999999742 21110 0111111111112222 45668999999999
Q ss_pred ccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-
Q psy8722 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA- 152 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~- 152 (223)
+.+|...+..++..+|++|+|+|+++..+......|..... .++|+++++||+|+.... ..+...++...+++
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~ 156 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLD 156 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCC
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCC
Confidence 99998888888999999999999999877777777766553 368999999999986543 23345566666676
Q ss_pred --cEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 153 --VHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 153 --~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
+++.+||++|.|++++|++|.+.+.
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhcc
Confidence 4899999999999999999887664
No 146
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=4.6e-21 Score=159.57 Aligned_cols=158 Identities=17% Similarity=0.195 Sum_probs=103.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC---CCCCCCcc--ccceeEEEEEEEE-------------C--C----eEEEEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED---KFNEKHIT--TLQASFLNKKLNI-------------A--G----KRLNLAI 68 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~i 68 (223)
.+.++|+++|+.++|||||+++|.+. .+..+..+ |....+....+.. + + ....+.|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 56799999999999999999999843 33344344 3333333322211 1 1 1368999
Q ss_pred EeCCCccccccccccccccCCEEEEEEECCC----HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc--CCHHH
Q psy8722 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITD----EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT--VMQED 142 (223)
Q Consensus 69 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~ 142 (223)
|||||++.|...+...+..+|++|+|+|+++ +++++.+.. +... ...|+++++||+|+..... ...++
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL--GIDKIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT--TCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc--CCCeEEEEEEccCCCCHHHHHHHHHH
Confidence 9999999988777777788999999999995 444444432 2222 1247999999999965433 23455
Q ss_pred HHHHHHH---hCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 143 AEKYAQS---VGAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 143 ~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
+.+++.. .+++++++||++|.|+++++++|.+.+
T Consensus 160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 6666654 356899999999999999999988654
No 147
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.85 E-value=4.6e-21 Score=159.68 Aligned_cols=159 Identities=16% Similarity=0.190 Sum_probs=109.9
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhC---CCCCCCccccce--eEEEEEEEE-------------C--C----eEEEEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVED---KFNEKHITTLQA--SFLNKKLNI-------------A--G----KRLNLA 67 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~---~~~~~~~~~~~~--~~~~~~~~~-------------~--~----~~~~~~ 67 (223)
..+.++|+++|+.++|||||+++|++. .+..+..++++. .+....+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 467899999999999999999999843 333343443333 333222211 1 1 136799
Q ss_pred EEeCCCccccccccccccccCCEEEEEEECCC----HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc--CCHH
Q psy8722 68 IWDTAGQERFHALGPIYYRMSNGAVLVYDITD----EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT--VMQE 141 (223)
Q Consensus 68 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~ 141 (223)
||||||++.|.......+..+|++|+|+|+++ +++.+.+.. +.... ..|+++++||+|+..... ...+
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~~--~~~iivviNK~Dl~~~~~~~~~~~ 160 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQIIG--QKNIIIAQNKIELVDKEKALENYR 160 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHHT--CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcC--CCcEEEEEECccCCCHHHHHHHHH
Confidence 99999999988777777788999999999995 344444432 22221 257999999999865432 1234
Q ss_pred HHHHHHHH---hCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 142 DAEKYAQS---VGAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 142 ~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
++.+++.. .+++++.+||+++.|+++++++|.+.+
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 44555543 356899999999999999999887654
No 148
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.85 E-value=2.2e-21 Score=164.65 Aligned_cols=152 Identities=21% Similarity=0.198 Sum_probs=99.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCC--C-----------------------------CCCCccccceeEEEEEEEECC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDK--F-----------------------------NEKHITTLQASFLNKKLNIAG 61 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (223)
.+.+||+++|++++|||||+++|+... + ..+...+++.+.....+...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-
Confidence 457999999999999999999997431 1 11112233333333333333
Q ss_pred eEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHH------HHHHHHHHHHHcCCCCeEEEEEeCCCcccc
Q psy8722 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEK------VKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135 (223)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (223)
...+.||||||+++|...+..++..+|++|+|+|+++..++.. ....+..... . ...|+++++||+|+.+.
T Consensus 110 -~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~-~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 110 -RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-L-GIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp -SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-T-TCCCEEEEEECGGGGTT
T ss_pred -CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-c-CCCcEEEEEECcCcccc
Confidence 3678999999999999888899999999999999998754322 1122222222 2 12469999999999754
Q ss_pred ccCCHHH----HHHHHHHhC-----CcEEEecCCCCCCHHHH
Q psy8722 136 RTVMQED----AEKYAQSVG-----AVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 136 ~~~~~~~----~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 168 (223)
++...++ +..++..++ ++++++||++|.|+.++
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 3322333 333444443 57899999999999864
No 149
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.1e-21 Score=145.31 Aligned_cols=117 Identities=20% Similarity=0.301 Sum_probs=88.8
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCC---CCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc-
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNE---KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM- 87 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~- 87 (223)
..+.++|+++|++|+|||||+++|.+..+.. ...++.+.++ ..+.+.+|||||++.+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 3678999999999999999999999776543 2223332222 23568899999999888777777766
Q ss_pred ---CCEEEEEEECC-CHHHHHHHHHHHHHHHHH----cCCCCeEEEEEeCCCcccccc
Q psy8722 88 ---SNGAVLVYDIT-DEDSFEKVKNWVKELKKM----LGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 88 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
+|++|+|+|++ +..++..+..|+..+... ...+.|+++|+||+|+.....
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 899999998888776654 235799999999999866543
No 150
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=1.1e-20 Score=158.57 Aligned_cols=162 Identities=18% Similarity=0.162 Sum_probs=109.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc----------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG---------- 81 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~---------- 81 (223)
...++|+++|++|||||||+|+|.+... .....++++.+.....+.+++. .+.+|||+|........
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 4569999999999999999999996653 2344556666666666777875 57899999974332211
Q ss_pred --ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHH-HHHHH----hCCcE
Q psy8722 82 --PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAE-KYAQS----VGAVH 154 (223)
Q Consensus 82 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~ 154 (223)
..++..+|++++|+|+.+..+.... .+...+.. .+.|+++++||+|+...+....++.. .+... .+.++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 2356789999999999886555432 22233332 36899999999998655443344333 22222 35689
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 155 FHTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
+++||++|.|++++|+.+.+.+....
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999998776554
No 151
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.85 E-value=1.1e-20 Score=153.66 Aligned_cols=119 Identities=13% Similarity=0.128 Sum_probs=93.4
Q ss_pred eEEEEEEEeCCCccccccccccccccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCC
Q psy8722 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDIT----------DEDSFEKVKNWVKELKKML-GNDICLTIAGNKI 130 (223)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~ 130 (223)
..+.+.+|||+|++.++..+..++++++++|+|||++ +..++.....|+..+.... ..++|++||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 7788888888888776542 2579999999999
Q ss_pred Ccccccc--C-------------------CHHHHHHHHHH----------------hCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 131 DLEKQRT--V-------------------MQEDAEKYAQS----------------VGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 131 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
|+...+. + ..+++.+++.. ..+.+++|||+++.||.++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9844321 1 13556666432 123468999999999999999999
Q ss_pred HHHHHHH
Q psy8722 174 QRMLEKA 180 (223)
Q Consensus 174 ~~~~~~~ 180 (223)
+.+++..
T Consensus 341 ~~I~~~~ 347 (354)
T 2xtz_A 341 ETLRRRN 347 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887653
No 152
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.84 E-value=7.3e-23 Score=174.24 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=115.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
++..+|+++|++++|||||+++|....+.....++++.++....+..++. ..+.||||||++.|..++..++..+|++|
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 35678999999999999999999976666556666666655544444221 36889999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC-CHHHHHHH---HHHh--CCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV-MQEDAEKY---AQSV--GAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~ 166 (223)
+|+|+++........ .+......++|+++++||+|+...... ..++...+ +..+ .++++++||++|.|++
T Consensus 81 LVVDa~dg~~~qt~e----~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 81 LVVAADDGVMKQTVE----SIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp EECBSSSCCCHHHHH----HHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEEECCCCccHHHHH----HHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 999999865443333 333333457899999999998643221 11122111 1112 2478999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 167 EMFLELSQRM 176 (223)
Q Consensus 167 ~~~~~i~~~~ 176 (223)
++|++|...+
T Consensus 157 eLle~I~~l~ 166 (537)
T 3izy_P 157 ALAEATIALA 166 (537)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHhh
Confidence 9999988655
No 153
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.84 E-value=3.2e-20 Score=144.52 Aligned_cols=163 Identities=12% Similarity=0.114 Sum_probs=105.5
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccc--cceeEEEEEEEECCeEEEEEEEeCCCc--------ccccccc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITT--LQASFLNKKLNIAGKRLNLAIWDTAGQ--------ERFHALG 81 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~ 81 (223)
....+||+|+|.+|+|||||+|+|++.........+ ++..........++ ..+.||||||. +.+....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 367899999999999999999999976655433322 33333344455666 56889999995 3332223
Q ss_pred cccc----ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCccccccC------CHHHHHHHHH
Q psy8722 82 PIYY----RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG---NDICLTIAGNKIDLEKQRTV------MQEDAEKYAQ 148 (223)
Q Consensus 82 ~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~------~~~~~~~~~~ 148 (223)
..++ +.+|++|+|+|+++... ....++..+....+ .+.|+++++||.|+...... ..+..+.+..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~--~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTA--QDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCH--HHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCH--HHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHH
Confidence 2333 89999999999985321 11223334444332 25799999999998653210 1134677778
Q ss_pred HhCCcEEEecCCC-----CCCHHHHHHHHHHHHHH
Q psy8722 149 SVGAVHFHTSAKM-----NRGIEEMFLELSQRMLE 178 (223)
Q Consensus 149 ~~~~~~~~~Sa~~-----~~~i~~~~~~i~~~~~~ 178 (223)
..+..++..+... +.++.++++.|.+.+.+
T Consensus 174 ~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 174 ECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 8888777666554 57899999988887765
No 154
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.84 E-value=4.5e-20 Score=150.60 Aligned_cols=123 Identities=14% Similarity=0.201 Sum_probs=92.9
Q ss_pred EEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHH-cCCCCeEE
Q psy8722 56 KLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITD----------EDSFEKVKNWVKELKKM-LGNDICLT 124 (223)
Q Consensus 56 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~p~i 124 (223)
.+.+++ +.+.+|||+|++.+...+..++++++++|+|||+++ ..++.....|+..+... ...++|++
T Consensus 195 ~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piI 272 (362)
T 1zcb_A 195 DFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 272 (362)
T ss_dssp EEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred EeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEE
Confidence 344444 789999999999999999999999999999999999 67888888888777653 23579999
Q ss_pred EEEeCCCccccc----------------cCCHHHHHHHHH-----------HhCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 125 IAGNKIDLEKQR----------------TVMQEDAEKYAQ-----------SVGAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 125 vv~nK~Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
|++||+|+...+ .+..+++.+++. ..++.++++||+++.||.++|+++.+.++
T Consensus 273 Lv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 273 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp EEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 999999985332 256777777652 34567899999999999999999999887
Q ss_pred HHH
Q psy8722 178 EKA 180 (223)
Q Consensus 178 ~~~ 180 (223)
+..
T Consensus 353 ~~~ 355 (362)
T 1zcb_A 353 HDN 355 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 155
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.84 E-value=1.8e-21 Score=153.83 Aligned_cols=159 Identities=14% Similarity=0.166 Sum_probs=91.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh-CCCCCCC-------ccccceeEEEEEEEECCeEEEEEEEeCCCcccc-------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE-DKFNEKH-------ITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF------- 77 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------- 77 (223)
...++|+|+|.+|+|||||+|+|.. ..+...+ .+|.+.+.....+..++..+.+.+|||||....
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 3579999999999999999999874 3344443 456666666666656666678999999996322
Q ss_pred cccc-------cccc-------------ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 78 HALG-------PIYY-------------RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 78 ~~~~-------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
.... ..++ ..+|+++++++.........-..++..+.. ++|+++|+||+|+.....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHH
Confidence 1111 1222 237899999977652211122233333332 689999999999753322
Q ss_pred C--CHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 138 V--MQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 138 ~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
. ..+.+.+.+...+++++.+|+.+++|+.+++++|.+.
T Consensus 162 ~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 162 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 1 1133455566778999999999999999998887654
No 156
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.84 E-value=7.5e-20 Score=150.51 Aligned_cols=123 Identities=14% Similarity=0.128 Sum_probs=98.1
Q ss_pred EEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHc-CCCCeEEE
Q psy8722 57 LNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITD----------EDSFEKVKNWVKELKKML-GNDICLTI 125 (223)
Q Consensus 57 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~iv 125 (223)
+.+++ +.+.+|||+|++.++..+..++++++++|+|||+++ ..++.....|+..+.... ..++|++|
T Consensus 212 ~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiL 289 (402)
T 1azs_C 212 FQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVIL 289 (402)
T ss_dssp EEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEE
T ss_pred eecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEE
Confidence 44444 789999999999999999999999999999999999 889999999998887642 35789999
Q ss_pred EEeCCCcccccc---C---------------------------CHHHHHHHH-----HH--------hCCcEEEecCCCC
Q psy8722 126 AGNKIDLEKQRT---V---------------------------MQEDAEKYA-----QS--------VGAVHFHTSAKMN 162 (223)
Q Consensus 126 v~nK~Dl~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~ 162 (223)
|+||+|+...+. + ..+++.+++ .. .++.++++||+++
T Consensus 290 vgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~ 369 (402)
T 1azs_C 290 FLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDT 369 (402)
T ss_dssp EEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCH
T ss_pred EEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecC
Confidence 999999844322 1 134555553 22 2456789999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~~~~~ 181 (223)
.||.++|..+.+.++....
T Consensus 370 ~nV~~vF~~v~~~I~~~~l 388 (402)
T 1azs_C 370 ENIRRVFNDCRDIIQRMHL 388 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 9999999999888876543
No 157
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.83 E-value=1.1e-20 Score=161.38 Aligned_cols=116 Identities=12% Similarity=0.056 Sum_probs=83.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC------------------C----CCccccceeEEEEEEEECCeEEEEEEEe
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN------------------E----KHITTLQASFLNKKLNIAGKRLNLAIWD 70 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D 70 (223)
.+..+|+|+|++|+|||||+++|+..... . ....+++.......+.+++ +.+.|||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 45789999999999999999999611100 0 0012222233333444555 6789999
Q ss_pred CCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
|||+.+|......+++.+|++|+|+|+++........-|.. + ...++|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~---~~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-C---RLRHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-H---HTTTCCEEEEEECTTSCC
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-H---HHcCCCEEEEEeCCCCcc
Confidence 99999999999999999999999999998766655554432 2 234689999999999854
No 158
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.83 E-value=8.7e-22 Score=165.24 Aligned_cols=151 Identities=14% Similarity=0.204 Sum_probs=97.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcc--------ccccccccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE--------RFHALGPIYYR 86 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~ 86 (223)
.+|+++|.+|||||||+|+|.+.... ....++.+.+.....+.+.+ ..+.+|||||.+ .+......+++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 68999999999999999999966553 23344555555444444444 468899999975 44555667889
Q ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCH
Q psy8722 87 MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGI 165 (223)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 165 (223)
.+|++|+|+|+.++.+.... .+...++ ..++|+++|+||+|+..... +..++. .+++ +++++||++|.|+
T Consensus 82 ~ad~il~vvD~~~~~~~~d~-~~~~~l~---~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADE-EVAKILY---RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGL 152 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHH-HHHHHHT---TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTH
T ss_pred hCCEEEEEEeCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCCh
Confidence 99999999999986554432 2222232 24789999999999854321 111222 3455 7899999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRML 177 (223)
Q Consensus 166 ~~~~~~i~~~~~ 177 (223)
.++++++.+.+.
T Consensus 153 ~~L~~~i~~~l~ 164 (436)
T 2hjg_A 153 GDLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHHTGG
T ss_pred HHHHHHHHHhcC
Confidence 999999987764
No 159
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.83 E-value=1.4e-21 Score=163.88 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=106.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC--CCCCC-----------------------------CccccceeEEEEEEEECC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED--KFNEK-----------------------------HITTLQASFLNKKLNIAG 61 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 61 (223)
.+.+||+++|+.++|||||+++|+.. .+... ...+++.+.....+..++
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 56799999999999999999999853 33211 012233333333333333
Q ss_pred eEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHc----CCCC-eEEEEEeCCCccccc
Q psy8722 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML----GNDI-CLTIAGNKIDLEKQR 136 (223)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~-p~ivv~nK~Dl~~~~ 136 (223)
..+.||||||+++|...+..++..+|++|+|+|+++ .+|+.+..|......+. ..+. ++++++||+|+.+..
T Consensus 84 --~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 84 --YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp --CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred --eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 578999999999998888889999999999999999 67776554433332221 1233 689999999986521
Q ss_pred ------cCCHHHHHHHHHHhC-----CcEEEecCCCCCCHHHHHH
Q psy8722 137 ------TVMQEDAEKYAQSVG-----AVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 137 ------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 170 (223)
....+++.+++..++ ++++++||++|.|+.+++.
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 112355667777766 5799999999999986654
No 160
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.83 E-value=8.4e-20 Score=157.64 Aligned_cols=158 Identities=22% Similarity=0.204 Sum_probs=107.0
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCC----ccccceeEEEEEE------------EECCeEEEEEEEeCCCcccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKH----ITTLQASFLNKKL------------NIAGKRLNLAIWDTAGQERF 77 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~i~D~~G~~~~ 77 (223)
+.++|+++|++++|||||+++|.+..+.... .++.+..+..... .++.....+.||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 4679999999999999999999865443221 1222322221100 00001125889999999999
Q ss_pred ccccccccccCCEEEEEEECCC---HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC-------------H-
Q psy8722 78 HALGPIYYRMSNGAVLVYDITD---EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM-------------Q- 140 (223)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-------------~- 140 (223)
..++..++..+|++|+|+|+++ +.+++.+.. +.. .++|+++++||+|+....... .
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9999999999999999999999 666655442 222 368999999999985432110 0
Q ss_pred --H-------HHHHHHHHhC---------------CcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 141 --E-------DAEKYAQSVG---------------AVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 141 --~-------~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
+ +..+.....+ ++++.+||++|.|+++++++|...+..
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 0 1111122222 278999999999999999999886653
No 161
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.83 E-value=1.6e-20 Score=157.50 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=106.3
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhCC--CCCC----------Ccc---------------------ccceeEEEE
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDK--FNEK----------HIT---------------------TLQASFLNK 55 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~----------~~~---------------------~~~~~~~~~ 55 (223)
.....+.+||+++|+.++|||||+++|+... +... ... +++.+....
T Consensus 18 ~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~ 97 (434)
T 1zun_B 18 QHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR 97 (434)
T ss_dssp STTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred hcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeee
Confidence 3344677999999999999999999998432 1110 001 112222222
Q ss_pred EEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc
Q psy8722 56 KLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135 (223)
Q Consensus 56 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (223)
.+..++ ..+.||||||+++|...+..++..+|++|+|+|+++... .....|+..+... ...|+++++||+|+.+.
T Consensus 98 ~~~~~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 98 YFSTAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL--GIKHIVVAINKMDLNGF 172 (434)
T ss_dssp EEECSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCEEEEEEECTTTTTS
T ss_pred EeecCC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEEcCcCCcc
Confidence 233333 578899999999998888888999999999999998542 2233444444432 12369999999998652
Q ss_pred cc----CCHHHHHHHHHHhC-----CcEEEecCCCCCCHHHHHH
Q psy8722 136 RT----VMQEDAEKYAQSVG-----AVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 136 ~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 170 (223)
.. ...++..+++..++ ++++++||++|.|+.++++
T Consensus 173 ~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 173 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred cHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 21 12345666777777 5799999999999988544
No 162
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.83 E-value=2e-21 Score=159.12 Aligned_cols=161 Identities=16% Similarity=0.248 Sum_probs=88.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh-CCCCCCCc--------cccceeEEEEEEEECCeEEEEEEEeCCCc-------cc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE-DKFNEKHI--------TTLQASFLNKKLNIAGKRLNLAIWDTAGQ-------ER 76 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~ 76 (223)
...++|+|+|++|+|||||+++|.+ ..+...+. ++.+.......+...+..+.+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 3468999999999999999999874 33333322 34444443333444566678999999998 55
Q ss_pred cccccc-------cccccC-------------CEEEEEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc
Q psy8722 77 FHALGP-------IYYRMS-------------NGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ 135 (223)
Q Consensus 77 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (223)
+..+.. .++..+ |+++|+++.. ..++..+. .|+..+ ..++|+++|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence 555554 444433 3444444431 33444443 333333 357899999999998665
Q ss_pred ccCCH--HHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 136 RTVMQ--EDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 136 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
+.+.. +++.+++..++++++++||+++.+ ++.|.++.+.+...
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 54433 466677777889999999999999 88898888887654
No 163
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.83 E-value=1.7e-20 Score=153.90 Aligned_cols=147 Identities=12% Similarity=0.056 Sum_probs=107.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
+|+++|++++|||||+++|+ ..+++.+.....+..++ ..+.+|||||+++|.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 22333333333444444 468999999999998777778899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCeE-EEEEe-CCCccccccCC--HHHHHHHHHHhC---CcEEE--ecCCC---CCC
Q psy8722 97 ITDEDSFEKVKNWVKELKKMLGNDICL-TIAGN-KIDLEKQRTVM--QEDAEKYAQSVG---AVHFH--TSAKM---NRG 164 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~--~Sa~~---~~~ 164 (223)
++ ..+....+|+..+... ++|. ++++| |+|+ +..... .+++.+++...+ ++++. +||++ +.|
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 53 3445555666655543 4676 88899 9998 432211 134555554443 58999 99999 999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRMLEK 179 (223)
Q Consensus 165 i~~~~~~i~~~~~~~ 179 (223)
++++++.|.+.+...
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999998876554
No 164
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.82 E-value=4.6e-20 Score=148.64 Aligned_cols=116 Identities=15% Similarity=0.153 Sum_probs=93.1
Q ss_pred EEEEEEEeCCCccccccccccccccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCC
Q psy8722 63 RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDIT----------DEDSFEKVKNWVKELKKML-GNDICLTIAGNKID 131 (223)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D 131 (223)
.+.+++||++|++.++..|..|+++++++|+|||++ +..++.....|+..+.... ..++|++|++||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 378999999999999999999999999999999998 6677877777777665532 35799999999999
Q ss_pred ccccc---------------cCCHHHHHHHHHH-h--------------------------CCcEEEecCCCCCCHHHHH
Q psy8722 132 LEKQR---------------TVMQEDAEKYAQS-V--------------------------GAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 132 l~~~~---------------~~~~~~~~~~~~~-~--------------------------~~~~~~~Sa~~~~~i~~~~ 169 (223)
+...+ ....+++.+++.. . .+.++++||+++.||..+|
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 84321 1235555554432 2 3568899999999999999
Q ss_pred HHHHHHHHH
Q psy8722 170 LELSQRMLE 178 (223)
Q Consensus 170 ~~i~~~~~~ 178 (223)
+.+.+.+++
T Consensus 320 ~~v~~~Il~ 328 (340)
T 4fid_A 320 MLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999988
No 165
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.82 E-value=4.2e-21 Score=162.17 Aligned_cols=155 Identities=13% Similarity=0.112 Sum_probs=93.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh--CCCCC-----------------------------CCccccceeEEEEEEEECC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE--DKFNE-----------------------------KHITTLQASFLNKKLNIAG 61 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 61 (223)
.+.++|+++|+.++|||||+++|+. +.+.. +...+++.+.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 5679999999999999999999973 22210 0012223333333344444
Q ss_pred eEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHH---HHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccc-
Q psy8722 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDED---SFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQR- 136 (223)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~- 136 (223)
..+.||||||+++|...+...+..+|++|+|+|+++.. +|+...+|...+......++| +++++||+|+....
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 57889999999999988888899999999999999863 333222333333333334677 99999999985321
Q ss_pred -----cCCHHHHHHHHHHh-C------CcEEEecCCCCCCHHHHH
Q psy8722 137 -----TVMQEDAEKYAQSV-G------AVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 137 -----~~~~~~~~~~~~~~-~------~~~~~~Sa~~~~~i~~~~ 169 (223)
....++..+++... + ++++++||++|.|+.+++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11223466666665 3 569999999999998766
No 166
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.82 E-value=1.6e-20 Score=155.81 Aligned_cols=159 Identities=12% Similarity=0.074 Sum_probs=105.8
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCC-------CCCC-------CccccceeEEEEEEEECCeEEEEEEEeCCCcccccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDK-------FNEK-------HITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA 79 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 79 (223)
+.+||+++|+.++|||||+++|.... +... .....+.++......+......+.||||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 57999999999999999999998531 1100 001122222222233333335788999999999888
Q ss_pred ccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCcccccc---CCHHHHHHHHHHhC----
Q psy8722 80 LGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRT---VMQEDAEKYAQSVG---- 151 (223)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~---- 151 (223)
.+..++..+|++|+|+|+++....+... ++..+.. .++| +++++||+|+..... ...+++.+++..++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTRE-HLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHH-HHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 8888899999999999999854333222 2233333 2578 689999999864211 12245666777766
Q ss_pred -CcEEEecCCCCCC----------HHHHHHHHHHHH
Q psy8722 152 -AVHFHTSAKMNRG----------IEEMFLELSQRM 176 (223)
Q Consensus 152 -~~~~~~Sa~~~~~----------i~~~~~~i~~~~ 176 (223)
++++++||+++.| +.++++.|.+.+
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 5899999998764 666666665443
No 167
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.82 E-value=6.5e-21 Score=158.54 Aligned_cols=148 Identities=11% Similarity=0.120 Sum_probs=102.4
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhC--------CCCCC---------CccccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVED--------KFNEK---------HITTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
...+.++|+++|++++|||||+++|... .+... ...+.+.+. ....++.....+.||||||
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~~~~~~~~iiDtpG 84 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT--AHVEYETAKRHYSHVDCPG 84 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSC--EEEEEECSSCEEEEEECCC
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEe--eeeEeccCCeEEEEEECCC
Confidence 3467899999999999999999999852 11100 012223333 2333333336788999999
Q ss_pred ccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCcccccc---CCHHHHHHHHHH
Q psy8722 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRT---VMQEDAEKYAQS 149 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~ 149 (223)
+++|...+..++..+|++|+|+|+++... .....|+..+... ++| +++++||+|+..... ...++..+++..
T Consensus 85 ~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (405)
T 2c78_A 85 HADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQ 160 (405)
T ss_dssp SGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHH
Confidence 99998888888999999999999988643 3344555555443 578 889999999864211 112355666766
Q ss_pred hC-----CcEEEecCCCCCC
Q psy8722 150 VG-----AVHFHTSAKMNRG 164 (223)
Q Consensus 150 ~~-----~~~~~~Sa~~~~~ 164 (223)
++ ++++++||+++.|
T Consensus 161 ~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 161 YEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp TTSCTTTSCEEECCHHHHHH
T ss_pred hcccccCCCEEEccHHHhhh
Confidence 65 5899999999987
No 168
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.81 E-value=5.6e-20 Score=159.55 Aligned_cols=155 Identities=17% Similarity=0.147 Sum_probs=104.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCC-------------------------------ccccceeEEEEEEEEC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKH-------------------------------ITTLQASFLNKKLNIA 60 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 60 (223)
..+.+||+++|++++|||||+++|+........ .++++.+.....+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 356899999999999999999999854322111 1233444444444444
Q ss_pred CeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHH---HHHHHHHHHHHHHHcCCC-CeEEEEEeCCCccccc
Q psy8722 61 GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDS---FEKVKNWVKELKKMLGND-ICLTIAGNKIDLEKQR 136 (223)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~~~~ 136 (223)
+ ..+.||||||++.|...+..++..+|++|+|+|+++... +.....+...+......+ .|++||+||+|+....
T Consensus 244 ~--~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 244 R--ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp S--CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTC
T ss_pred C--ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchh
Confidence 4 578999999999998888889999999999999987521 101112222222222223 4599999999986532
Q ss_pred cCC----HHHHHHHHHHhC-----CcEEEecCCCCCCHHHH
Q psy8722 137 TVM----QEDAEKYAQSVG-----AVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 137 ~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 168 (223)
... .+++..++...+ ++++.+||++|.|+.++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 222 233444445444 58999999999999876
No 169
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.81 E-value=1.3e-21 Score=165.27 Aligned_cols=153 Identities=21% Similarity=0.236 Sum_probs=108.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
++..+|+++|+.++|||||+++|....+.....++++.+.....+..++ ..+.||||||++.|..++...+..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4568999999999999999999986555544444454444333344444 36789999999999999999999999999
Q ss_pred EEEECCCH---HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc--cCCHH--HHHHHHHHhC--CcEEEecCCCCC
Q psy8722 93 LVYDITDE---DSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR--TVMQE--DAEKYAQSVG--AVHFHTSAKMNR 163 (223)
Q Consensus 93 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~--~~~~~~~~~~--~~~~~~Sa~~~~ 163 (223)
+|+|+++. ++.+.+ ..+. ..++|+++++||+|+.... .+..+ +...+...++ ++++++||++|.
T Consensus 80 LVVda~~g~~~qT~e~l----~~~~---~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI----QHAK---AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp EEEETTTBSCTTTHHHH----HHHH---HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred EEeecccCccHHHHHHH----HHHH---hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 99999883 333222 2222 2368999999999986431 11100 0000112233 689999999999
Q ss_pred CHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQ 174 (223)
Q Consensus 164 ~i~~~~~~i~~ 174 (223)
|++++|++|..
T Consensus 153 gI~eLle~I~~ 163 (501)
T 1zo1_I 153 GIDELLDAILL 163 (501)
T ss_dssp TCTTHHHHTTT
T ss_pred Ccchhhhhhhh
Confidence 99999998864
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.80 E-value=2.5e-20 Score=157.07 Aligned_cols=152 Identities=14% Similarity=0.142 Sum_probs=103.8
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhC--CCCCC-----------------------------CccccceeEEEEEEEEC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVED--KFNEK-----------------------------HITTLQASFLNKKLNIA 60 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 60 (223)
..+.++|+++|++++|||||+++|+.. .+... ...+++.+.....+..+
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 356899999999999999999999853 22110 01223333333333334
Q ss_pred CeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHcCCCCe-EEEEEeCCCcc
Q psy8722 61 GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDED---SFE---KVKNWVKELKKMLGNDIC-LTIAGNKIDLE 133 (223)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~ 133 (223)
+ ..+.||||||+++|...+..++..+|++|+|+|+++.. +|+ ....++..+.. .++| +++++||+|+.
T Consensus 84 ~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 84 K--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSV 158 (458)
T ss_dssp S--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGG
T ss_pred C--ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccc
Confidence 4 67999999999999888888899999999999999763 221 22222222222 2455 89999999986
Q ss_pred cccc----CCHHHHHHHHHHhC-----CcEEEecCCCCCCHHHH
Q psy8722 134 KQRT----VMQEDAEKYAQSVG-----AVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 134 ~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 168 (223)
.... ...+++.+++..++ ++++++||++|.|+.+.
T Consensus 159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 3111 12244566666666 58999999999999754
No 171
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.79 E-value=1.2e-18 Score=136.72 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=88.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccc-----
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYR----- 86 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~----- 86 (223)
.+.++|+++|.+|+|||||+++|++.... ....++.+.......+..++ ..+.||||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 46899999999999999999999976642 23233334444445555666 47889999999887666555443
Q ss_pred ----cCCEEEEEEECCCHHHHHHH-HHHHHHHHHHcCCC--CeEEEEEeCCCccccccCC
Q psy8722 87 ----MSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGND--ICLTIAGNKIDLEKQRTVM 139 (223)
Q Consensus 87 ----~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~p~ivv~nK~Dl~~~~~~~ 139 (223)
.+|++++|++++... +... ..|+..+....+.+ .|+++|+||+|+...+...
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~ 170 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELS 170 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCcc
Confidence 789999999998754 4333 46777777765543 4899999999985444333
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.79 E-value=1.6e-19 Score=163.07 Aligned_cols=160 Identities=14% Similarity=0.065 Sum_probs=106.0
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCC-------CCC-------CCccccceeEEEEEEEECCeEEEEEEEeCCCccc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDK-------FNE-------KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 76 (223)
...+.+||+++|+.++|||||+++|+... +.. ....+.|.++....+.++.....+.||||||+++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 44678999999999999999999998531 000 0011222222222233333346789999999999
Q ss_pred cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCcccccc---CCHHHHHHHHHHhC-
Q psy8722 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRT---VMQEDAEKYAQSVG- 151 (223)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~- 151 (223)
|...+..++..+|++|+|+|+++.... ....|+..+... ++| +++++||+|+..... ...+++.+++..++
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 988888889999999999999985432 233444444443 577 789999999864221 12245666777766
Q ss_pred ----CcEEEecCCCC--------CCHHHHHHHHHH
Q psy8722 152 ----AVHFHTSAKMN--------RGIEEMFLELSQ 174 (223)
Q Consensus 152 ----~~~~~~Sa~~~--------~~i~~~~~~i~~ 174 (223)
++++++||++| .|+.++++.|.+
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~ 482 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS 482 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence 58999999999 346666665554
No 173
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.78 E-value=1.3e-20 Score=163.00 Aligned_cols=150 Identities=17% Similarity=0.164 Sum_probs=81.7
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCC-------------------------------CCCCCccccceeEEEEEEEEC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDK-------------------------------FNEKHITTLQASFLNKKLNIA 60 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 60 (223)
....+||+++|++++|||||+++|+... +..+..++++.+.....+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4567899999999999999999996311 111112344444444444443
Q ss_pred CeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHH---HH---HHHHHHHHHHHHHcCCCCe-EEEEEeCCCcc
Q psy8722 61 GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDED---SF---EKVKNWVKELKKMLGNDIC-LTIAGNKIDLE 133 (223)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~ 133 (223)
...+.||||||++.|...+...+..+|++|+|+|+++.. .+ ......+..+.. .++| +++|+||+|+.
T Consensus 254 --~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 254 --KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLM 328 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGG
T ss_pred --CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccc
Confidence 367889999999999988888999999999999998532 11 111111222222 2455 89999999986
Q ss_pred ccccCC----HHHHHHHH-HHhCC-----cEEEecCCCCCCHH
Q psy8722 134 KQRTVM----QEDAEKYA-QSVGA-----VHFHTSAKMNRGIE 166 (223)
Q Consensus 134 ~~~~~~----~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~ 166 (223)
...... .+++..++ ...++ +++.+||++|.|+.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 522111 13333444 33454 68999999999998
No 174
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.78 E-value=1.3e-19 Score=144.70 Aligned_cols=159 Identities=17% Similarity=0.145 Sum_probs=100.4
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCC------Cccc----------------------ccee------------
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEK------HITT----------------------LQAS------------ 51 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~------~~~~----------------------~~~~------------ 51 (223)
....++|+|+|.+|+|||||+|+|++..+.+. ..++ .+.+
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999997776321 1122 0000
Q ss_pred -------E----EEEEEEECCeEEEEEEEeCCCccc-------------cccccccccccCCEEE-EEEECCCHHHHHHH
Q psy8722 52 -------F----LNKKLNIAGKRLNLAIWDTAGQER-------------FHALGPIYYRMSNGAV-LVYDITDEDSFEKV 106 (223)
Q Consensus 52 -------~----~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~ 106 (223)
+ ....+... ....+.||||||... +......+++.++.+| +|+|+++..+....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred hcccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 0 00000111 125689999999642 3344566778888776 79999875444333
Q ss_pred HHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHH--hC-CcEEEecCCCCCCHHHHHHHHHH
Q psy8722 107 KNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS--VG-AVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 107 ~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
..|+..+ ...+.|+++|+||+|+........+........ .+ .+++++||+++.|++++++.|.+
T Consensus 182 ~~~~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 182 LKIAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHHHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHHHHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 3333333 335789999999999865443223222211011 12 35788999999999999999887
No 175
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=1.2e-19 Score=153.05 Aligned_cols=152 Identities=13% Similarity=0.194 Sum_probs=96.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCC--------ccccccccccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAG--------QERFHALGPIY 84 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~ 84 (223)
...+|+|+|.+|||||||+|+|.+..+. ....++.+.+.....+...+ ..+.+||||| ++.+......+
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--SCCEEECCCC------CCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--ceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 4579999999999999999999966553 23334444443333333333 5789999999 55666677778
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNR 163 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 163 (223)
++.+|++|+|+|..+..+. ...|+..+.+ ..++|+++|+||+|+.... ....++. .+++ .++.+||++|.
T Consensus 100 ~~~ad~il~VvD~~~~~~~--~d~~l~~~l~--~~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~ 170 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVTA--ADEEVAKILY--RTKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGL 170 (456)
T ss_dssp HHHCSEEEEEEESSSCSCH--HHHHHHHHHT--TCCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCT
T ss_pred HhhCCEEEEEEeCCCCCCh--HHHHHHHHHH--HcCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeeccccc
Confidence 8999999999998764322 2233322222 2478999999999975332 1111222 2333 56899999999
Q ss_pred CHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRM 176 (223)
Q Consensus 164 ~i~~~~~~i~~~~ 176 (223)
|+.++++.+.+.+
T Consensus 171 gv~~L~~~i~~~l 183 (456)
T 4dcu_A 171 GLGDLLDAVAEHF 183 (456)
T ss_dssp THHHHHHHHHTTG
T ss_pred chHHHHHHHHhhc
Confidence 9999999987654
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.77 E-value=2.4e-18 Score=150.93 Aligned_cols=116 Identities=11% Similarity=0.024 Sum_probs=81.5
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCc------------------cccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHI------------------TTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
..+..+|+++|+.|+|||||+++|.......... ...+.......+... .+.+.+|||||
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG 83 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPG 83 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCC
Confidence 4567899999999999999999998332211000 112222222333333 37789999999
Q ss_pred ccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
+..|......+++.+|++++|+|+.+...... ..++..+.. .++|+++++||+|+.
T Consensus 84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 84 YGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred ccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence 99998888889999999999999887543332 234444433 368999999999986
No 177
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.75 E-value=2.7e-18 Score=130.04 Aligned_cols=159 Identities=16% Similarity=0.158 Sum_probs=98.1
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc----------cccc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER----------FHAL 80 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~ 80 (223)
+..+..+|+++|++|+|||||+++|.+..+.....++.|.......+.+++ .+.+||+||... +...
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHH
Confidence 346678999999999999999999987654333344444443333333333 467899999742 2222
Q ss_pred ccccc---ccCCEEEEEEECCCHHHHH--HHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc--CCHHHHHHHHHHhC--
Q psy8722 81 GPIYY---RMSNGAVLVYDITDEDSFE--KVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT--VMQEDAEKYAQSVG-- 151 (223)
Q Consensus 81 ~~~~~---~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~-- 151 (223)
...++ ..++++++++|+.++.+.. .+..|+. . .+.|+++++||+|+....+ ...+.+..++...+
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~ 172 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD 172 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCC
Confidence 22333 4689999999998865443 2233332 1 3579999999999754321 11234444554444
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 152 AVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 152 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
+.++.+|++++.|++++++.|.+.+.+
T Consensus 173 ~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 173 VQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 467889999999999999998876543
No 178
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.75 E-value=1.3e-17 Score=146.68 Aligned_cols=120 Identities=17% Similarity=0.132 Sum_probs=85.2
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhC--CCC------CC----------CccccceeEEEEEEEECCeEEEEEEEe
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVED--KFN------EK----------HITTLQASFLNKKLNIAGKRLNLAIWD 70 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~--~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D 70 (223)
..+..+..+|+|+|+.|+|||||+++|+.. .+. .. .....+.......+.+++ +.+.|||
T Consensus 6 ~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liD 83 (691)
T 1dar_A 6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIID 83 (691)
T ss_dssp CCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEEC
T ss_pred cCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEE
Confidence 344577899999999999999999999831 110 00 011122222223334444 6789999
Q ss_pred CCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
|||+..|...+..+++.+|++|+|+|+++..++.....|..... .++|+++++||+|+..
T Consensus 84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~----~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK----YKVPRIAFANKMDKTG 143 (691)
T ss_dssp CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----TTCCEEEEEECTTSTT
T ss_pred CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH----cCCCEEEEEECCCccc
Confidence 99999998888889999999999999999877766666654332 3689999999999853
No 179
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.75 E-value=2.9e-17 Score=129.44 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=83.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccc--------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPI-------- 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-------- 83 (223)
...++|+++|.+|+|||||+|+|.+..+. ....++.+.......+..++ ..+.+|||||...+......
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 45899999999999999999999976652 22223333333333344444 67899999998766533221
Q ss_pred -ccccCCEEEEEEECCCHHHHHH-HHHHHHHHHHHcCCC--CeEEEEEeCCCcccccc
Q psy8722 84 -YYRMSNGAVLVYDITDEDSFEK-VKNWVKELKKMLGND--ICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 84 -~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~p~ivv~nK~Dl~~~~~ 137 (223)
....+|++++|+|++.. ++.. ...|+..+....+.+ .|+++|+||+|+.....
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~ 171 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG 171 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence 13479999999998763 2433 236777777665433 69999999999865443
No 180
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.75 E-value=1.2e-17 Score=138.45 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=108.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc----ccccccc---cccCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF----HALGPIY---YRMSN 89 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~d 89 (223)
.|+|+|++|||||||++++.+........+..+.......+..++ ...+.+||+||.... ..+...+ ...++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 589999999999999999986533222222222222233344443 245789999996432 2222222 34689
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEE 167 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (223)
.+++++|++ ..++..+..|...+..... ...|.++++||+|+... ...+...+.+...+.+++.+||+++.|+++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 999999998 5667777777766655421 24688999999998654 223445555566678999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 168 MFLELSQRMLEK 179 (223)
Q Consensus 168 ~~~~i~~~~~~~ 179 (223)
++++|.+.+.+.
T Consensus 315 L~~~i~~~l~~~ 326 (416)
T 1udx_A 315 LKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhc
Confidence 999999988654
No 181
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.74 E-value=1.8e-18 Score=138.30 Aligned_cols=134 Identities=19% Similarity=0.151 Sum_probs=110.0
Q ss_pred HHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHH-HHHHHH
Q psy8722 30 SVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDED-SFEKVK 107 (223)
Q Consensus 30 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 107 (223)
+|++++..+.|. ..+.+|+|..+. ..+..++ .+.+||+ ++++..++..+++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 578888888888 788899995553 3322222 6899999 8999999999999999999999999987 788899
Q ss_pred HHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC--CcEEEecCCCCCCHHHHHHHHHH
Q psy8722 108 NWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG--AVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 108 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
.|+..+.. .++|+++|+||+|+...+.+ ++..+++..++ .+++++||+++.|++++|..+..
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99988765 36899999999999654432 45677777777 89999999999999999988754
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.74 E-value=1.3e-18 Score=142.59 Aligned_cols=155 Identities=17% Similarity=0.123 Sum_probs=103.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEE-----------------------------------------
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLN----------------------------------------- 54 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~----------------------------------------- 54 (223)
.+|+|+|++|||||||+|+|++..+.+....+.+.....
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 399999999999999999999877633322222110000
Q ss_pred -----------EEEEE-CCeEEEEEEEeCCCcccc-------------ccccccccccCCEEEEEEECCCHHHHHHHHHH
Q psy8722 55 -----------KKLNI-AGKRLNLAIWDTAGQERF-------------HALGPIYYRMSNGAVLVYDITDEDSFEKVKNW 109 (223)
Q Consensus 55 -----------~~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 109 (223)
..+.+ ......+.+|||||...+ ......++.++|++|+|+|..+..... ..|
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~ 192 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDA 192 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHH
Confidence 00000 011135889999997765 445567889999999999876533221 345
Q ss_pred HHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 110 VKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 110 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
+..+......+.|+++|+||+|+........+....+...++.+|+.+++..+.++++.+..+
T Consensus 193 ~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 193 IKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp HHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred HHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 555665555678999999999987655555555555555667789999999888877665543
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.74 E-value=2.6e-17 Score=144.90 Aligned_cols=166 Identities=12% Similarity=0.133 Sum_probs=108.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccce--------------eE-------------------------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQA--------------SF------------------------- 52 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~--------------~~------------------------- 52 (223)
...++|+|+|.+|+|||||+|+|++.... ....+++.. .+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 35789999999999999999999976643 333333310 00
Q ss_pred --------------EEEEEEECCeE--EEEEEEeCCCccc---cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHH
Q psy8722 53 --------------LNKKLNIAGKR--LNLAIWDTAGQER---FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKEL 113 (223)
Q Consensus 53 --------------~~~~~~~~~~~--~~~~i~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 113 (223)
....+..+... ..+.||||||... .......++.++|++|+|+|++++.+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 00001111000 2488999999654 2344567789999999999999887777666565444
Q ss_pred HHHcCCCCeEEEEEeCCCccccccCCHH----------HHHH-----HHHH--------hCCcEEEecCC----------
Q psy8722 114 KKMLGNDICLTIAGNKIDLEKQRTVMQE----------DAEK-----YAQS--------VGAVHFHTSAK---------- 160 (223)
Q Consensus 114 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~----------~~~~-----~~~~--------~~~~~~~~Sa~---------- 160 (223)
.. .+.|+++|+||+|+.....+..+ .+.+ +... ...+++.+||+
T Consensus 227 ~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 227 KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 32 35789999999998544311111 1111 1111 12368999999
Q ss_pred ----CCCCHHHHHHHHHHHHHHHHH
Q psy8722 161 ----MNRGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 161 ----~~~~i~~~~~~i~~~~~~~~~ 181 (223)
++.|++++++.|.+.+...+.
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~l~~~~~ 328 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTFLTRERA 328 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHHHHHTHH
T ss_pred hhhhhccCHHHHHHHHHHHHHHhHH
Confidence 999999999999988765443
No 184
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.73 E-value=4.5e-17 Score=139.19 Aligned_cols=116 Identities=13% Similarity=0.035 Sum_probs=78.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCC--------------------Ccccccee--EEEEEEEECCeEEEEEEEe
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEK--------------------HITTLQAS--FLNKKLNIAGKRLNLAIWD 70 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~--~~~~~~~~~~~~~~~~i~D 70 (223)
.+.++|+++|++|+|||||+++|+....... ...+.+.+ .....+..++ +.+.|||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 5678999999999999999999985311000 00111111 1122233444 6788999
Q ss_pred CCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
|||+..|......++..+|++|+|+|+.+..... ...++ ......++|+++++||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~---~~~~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLM---EVTRLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHH---HHHTTTTCCEEEEEECTTSCC
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHH---HHHHHcCCCEEEEEcCcCCcc
Confidence 9999999888888999999999999998853221 12222 222334789999999999854
No 185
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.73 E-value=1.1e-18 Score=139.51 Aligned_cols=161 Identities=16% Similarity=0.236 Sum_probs=85.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC-CCCCCCc--------cccceeEEEEEEEECCeEEEEEEEeCCCc-------cc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED-KFNEKHI--------TTLQASFLNKKLNIAGKRLNLAIWDTAGQ-------ER 76 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~ 76 (223)
.-.++|+|+|++|+|||||+++|.+. .++.... ++.............+....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45689999999999999999998754 4443321 12222221222223344568999999997 44
Q ss_pred cccccc-------ccccc-------------CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc
Q psy8722 77 FHALGP-------IYYRM-------------SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136 (223)
Q Consensus 77 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (223)
+..... .+++. ++++++..+.+. .+++.+. ...+... ....++++|+||.|+...+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l-~~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAI-HNKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHH-TTTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHH-HhcCCEEEEEEeCCCCCHH
Confidence 444333 33322 234555554322 1222222 1223333 2457999999999986543
Q ss_pred cC--CHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 137 TV--MQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 137 ~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
++ ..+++.+++..++++++++||+++ +++++|..+.+.+..
T Consensus 172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 32 245778888999999999999999 999999999888753
No 186
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.72 E-value=1.5e-16 Score=140.25 Aligned_cols=121 Identities=16% Similarity=0.064 Sum_probs=84.3
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhC--CCCCC------C----------ccccceeEEEEEEEEC-----CeEEEE
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVED--KFNEK------H----------ITTLQASFLNKKLNIA-----GKRLNL 66 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~------~----------~~~~~~~~~~~~~~~~-----~~~~~~ 66 (223)
.+.++..||+|+|+.|+|||||+++|+.. .+... . ...++.......+.++ +..+.+
T Consensus 5 ~~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i 84 (704)
T 2rdo_7 5 TPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRI 84 (704)
T ss_pred CCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeE
Confidence 34567889999999999999999999742 11110 0 1111222222223332 234789
Q ss_pred EEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 67 AIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 67 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
.||||||+.+|...+..+++.+|++|+|+|+++.........|... . ..++|+++++||+|+..
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~-~---~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 85 NIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA-N---KYKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHH-H---HcCCCEEEEEeCCCccc
Confidence 9999999999988888899999999999999987655544444332 2 23689999999999743
No 187
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.72 E-value=1.2e-18 Score=143.95 Aligned_cols=85 Identities=18% Similarity=0.130 Sum_probs=47.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEE--E-------------------EECC-eEEEEEEEeCCC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKK--L-------------------NIAG-KRLNLAIWDTAG 73 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~i~D~~G 73 (223)
++|+++|.+|||||||+|+|++........+.++.+..... + .+++ ..+.+.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999966543333333332221111 1 1222 246899999999
Q ss_pred ccc----cccccc---cccccCCEEEEEEECCCH
Q psy8722 74 QER----FHALGP---IYYRMSNGAVLVYDITDE 100 (223)
Q Consensus 74 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 100 (223)
... ...+.. .+++.+|++++|+|+.+.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222222 456899999999999875
No 188
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=138.56 Aligned_cols=159 Identities=15% Similarity=0.181 Sum_probs=83.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCC-------ccccceeEEEEEEEECCeEEEEEEEeCCCccccc------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKH-------ITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH------ 78 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------ 78 (223)
.-.++|+|+|++|+|||||++.|.+..+. ... .++.+.......+...+....+.+||++|...+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 44678999999999999999999976553 211 1222222222222223333578999999965431
Q ss_pred -c------------------ccccccccCCEEEEEEECCCH-HHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 79 -A------------------LGPIYYRMSNGAVLVYDITDE-DSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 79 -~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
. ....++.++++.+++|..... .++.... .|+..+. .++|+++|+||+|+...+.
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHH
Confidence 1 123355666655555555432 2343333 4555553 3689999999999865544
Q ss_pred CCH--HHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 138 VMQ--EDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 138 ~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
+.. +.+.+.+..+++++|++|++++.++.++|..+...
T Consensus 185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 433 56777888889999999999999999877666553
No 189
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.72 E-value=1.3e-16 Score=140.51 Aligned_cols=118 Identities=18% Similarity=0.149 Sum_probs=84.3
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhh--CCCCCC-----------C-----ccccceeEEEEEEEECCeEEEEEEEeCC
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVE--DKFNEK-----------H-----ITTLQASFLNKKLNIAGKRLNLAIWDTA 72 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~--~~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (223)
+..+..+|+++|++|+|||||+++|+. ..+... + ...++.......+.+++ +.+.|||||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 83 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTP 83 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECc
Confidence 456789999999999999999999984 222100 0 11122222223344454 678999999
Q ss_pred CccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
|+..+......+++.+|++|+|+|+.+..+......|.. +.. .++|+++|+||+|+..
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 999998888889999999999999998776666555544 332 3689999999999853
No 190
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.69 E-value=4.5e-17 Score=130.92 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=67.9
Q ss_pred EEEEEEeCCCccc-------------cccccccccccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHcCCCCeEEEEEeC
Q psy8722 64 LNLAIWDTAGQER-------------FHALGPIYYRMSNGAVLVYDITDED-SFEKVKNWVKELKKMLGNDICLTIAGNK 129 (223)
Q Consensus 64 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK 129 (223)
..+.||||||... +......++..+|++++|+|..+.. .... +...+......+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~---~~~i~~~~~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSD---ALQLAKEVDPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCS---HHHHHHHHCSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhH---HHHHHHHhCCCCCcEEEEEcC
Confidence 4689999999653 3344566788999999999974322 1111 111222223347899999999
Q ss_pred CCccccccCCHHHHHHHHHHhCCcEEEecCC---C---CCCHHHHHHHHHHHHHH
Q psy8722 130 IDLEKQRTVMQEDAEKYAQSVGAVHFHTSAK---M---NRGIEEMFLELSQRMLE 178 (223)
Q Consensus 130 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~---~~~i~~~~~~i~~~~~~ 178 (223)
+|+........+.........+..++.+++. + +.|+.++++.+.+.+..
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 9986544322222221111122456666554 4 78899998888776654
No 191
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.66 E-value=1.2e-15 Score=130.82 Aligned_cols=116 Identities=13% Similarity=0.027 Sum_probs=82.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC----------------------CCCCccccceeEEEEEEEECCeEEEEEEEe
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF----------------------NEKHITTLQASFLNKKLNIAGKRLNLAIWD 70 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 70 (223)
.+.-||+|+|+.++|||||..+|+...- ..+...+++.......+.+++ +.+.|+|
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlID 106 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLD 106 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEEC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEe
Confidence 4567999999999999999999862110 112223333333444556666 5677789
Q ss_pred CCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
|||+.+|.......++-+|++|+|+|+.+.-......-|..... .++|.++++||+|...
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~----~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM----RATPVMTFVNKMDREA 166 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCCEEEEEECTTSCC
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH----hCCceEEEEecccchh
Confidence 99999999999999999999999999998655554444544433 3789999999999743
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.65 E-value=2.9e-16 Score=119.85 Aligned_cols=155 Identities=19% Similarity=0.144 Sum_probs=95.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCcccccee--------------EEEEEEEE----------------CCeE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQAS--------------FLNKKLNI----------------AGKR 63 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~~ 63 (223)
+..+|+++|.+|+|||||+++|...............+ .....+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 45799999999999999999998542211111111000 00011111 0112
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHH
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDA 143 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 143 (223)
+.+.+|||+|+.... ..+....+.+++|+|+.+... ....+... . +.|+++++||+|+........++.
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI---F---RVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh---h---hcCCEEEEecccCCcchhhHHHHH
Confidence 467899999851110 011135688999999876532 11111111 1 368899999999865433456666
Q ss_pred HHHHHHhC--CcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 144 EKYAQSVG--AVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 144 ~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
.+.+...+ .+++++||++|.|+++++++|.+.+...
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 66666553 6899999999999999999999877554
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.64 E-value=4.1e-15 Score=120.83 Aligned_cols=147 Identities=15% Similarity=0.108 Sum_probs=91.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCe---------------EEEEEEEeCCCccccc-
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGK---------------RLNLAIWDTAGQERFH- 78 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~- 78 (223)
.++|+++|.+|+|||||+|+|++..+.....++.+.+.....+.+++. ...+.+|||||...+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 478999999999999999999976654433343333322233444442 1468999999987653
Q ss_pred ---ccccc---ccccCCEEEEEEECCCH----------HHHHHHHHHHHHH-----------------------------
Q psy8722 79 ---ALGPI---YYRMSNGAVLVYDITDE----------DSFEKVKNWVKEL----------------------------- 113 (223)
Q Consensus 79 ---~~~~~---~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~----------------------------- 113 (223)
.+... +++.+|++++|+|+++. +++..+..+..++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~ 161 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE 161 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence 23222 46899999999999862 2333332211111
Q ss_pred -----------HH-------------------H-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC
Q psy8722 114 -----------KK-------------------M-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM 161 (223)
Q Consensus 114 -----------~~-------------------~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (223)
.. . ....+|+++++|+.|.........+.+.+++...+.+++.+||+.
T Consensus 162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 10 0 012489999999998643222345677788888899999999653
No 194
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.62 E-value=1.7e-18 Score=132.66 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=93.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEE------------EEEEEEC-CeE-----------------
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFL------------NKKLNIA-GKR----------------- 63 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~----------------- 63 (223)
+.++|+|+|.+|||||||+++|....+...+.++.+.++. ...+.++ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999966554444444443332 1111121 111
Q ss_pred --EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHH
Q psy8722 64 --LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQE 141 (223)
Q Consensus 64 --~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 141 (223)
..+.++|++|.-... ..+-...+..+.++|......... ..... . ..|.++|+||+|+........+
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI---M---KTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH---H---TTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH---h---hcCCEEEEeccccCchhHHHHH
Confidence 134455665521100 011122344566777532111000 00011 1 3688999999998665445667
Q ss_pred HHHHHHHHh--CCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 142 DAEKYAQSV--GAVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 142 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
+..+++... +.+++++||++|.|++++|++|.+.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 777777665 5689999999999999999999887653
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.60 E-value=1.9e-15 Score=135.58 Aligned_cols=118 Identities=16% Similarity=0.210 Sum_probs=86.1
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCC--CCC--------------CCcc--ccceeEEEEEEE------------ECC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDK--FNE--------------KHIT--TLQASFLNKKLN------------IAG 61 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~--------------~~~~--~~~~~~~~~~~~------------~~~ 61 (223)
..+..||+|+|+.++|||||+++|+... ... +... |+........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4567899999999999999999998431 110 0111 221222222222 234
Q ss_pred eEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
..+.+.||||||+.+|...+..+++.+|++|+|+|+.+..++.....|..... .++|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 46889999999999999999999999999999999999877777666655432 368999999999985
No 196
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.59 E-value=1.1e-16 Score=130.85 Aligned_cols=159 Identities=17% Similarity=0.130 Sum_probs=93.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCC------cccc----------------------cee-------------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKH------ITTL----------------------QAS------------- 51 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~------~~~~----------------------~~~------------- 51 (223)
....+|+|+|.+|||||||+|+|++..+.+.. .++. +.+
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34579999999999999999999987763221 1220 000
Q ss_pred --------EEEEEEEEC-CeEEEEEEEeCCCccc-------------cccccccccccCCEE-EEEEECCCHHHHHHHHH
Q psy8722 52 --------FLNKKLNIA-GKRLNLAIWDTAGQER-------------FHALGPIYYRMSNGA-VLVYDITDEDSFEKVKN 108 (223)
Q Consensus 52 --------~~~~~~~~~-~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~~~ 108 (223)
.....+.+. .....+.||||||... +..+...|+.+++.+ ++|.|++....-. .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~---~ 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS---D 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGC---H
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchh---H
Confidence 000001110 1124689999999532 333455566666544 5566665432211 2
Q ss_pred HHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHH--HHHhC-CcEEEecCCCCCCHHHHHHHHHH
Q psy8722 109 WVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKY--AQSVG-AVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 109 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~--~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
|...+......+.|+++|+||+|+........+..... ....+ .+++.+||+++.|++++++.+..
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 33334444455789999999999865433222211100 00122 24678999999999999988876
No 197
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.59 E-value=7.2e-16 Score=125.98 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=69.2
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHH
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDA 143 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 143 (223)
+.+.||||||... ........+|++++|+|....+....+..+ + ...|+++|+||+|+...... ....
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---~-----~~~p~ivVlNK~Dl~~~~~~-~~~~ 239 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG---V-----LELADIVVVNKADGEHHKEA-RLAA 239 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT---S-----GGGCSEEEEECCCGGGHHHH-HHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh---H-----hhcCCEEEEECCCCcChhHH-HHHH
Confidence 5788999999432 122345889999999998765433222210 0 13689999999998543221 1112
Q ss_pred HHHHHH---h-------CCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 144 EKYAQS---V-------GAVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 144 ~~~~~~---~-------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
.++... . +.+++.+||++|.|+++++++|.+.+..
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 222221 2 5789999999999999999999988765
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.56 E-value=1.6e-14 Score=117.96 Aligned_cols=156 Identities=17% Similarity=0.089 Sum_probs=94.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECC-------------------eEEEEEEEeCCCccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG-------------------KRLNLAIWDTAGQER 76 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~~ 76 (223)
++|+++|.+|+|||||+|+|++........+..+.+.......+.+ ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999995443222222222211111222221 224689999999775
Q ss_pred ccc----ccc---cccccCCEEEEEEECCCH----------HHHHHHHHHHHHH--------------------------
Q psy8722 77 FHA----LGP---IYYRMSNGAVLVYDITDE----------DSFEKVKNWVKEL-------------------------- 113 (223)
Q Consensus 77 ~~~----~~~---~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~-------------------------- 113 (223)
... +.. ..++.+|++++|+|+.+. +.+..+..+..++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 432 222 246899999999999862 1222221111101
Q ss_pred ---------HHHc------------------------CCCCeEEEEEeCCCcc--cc-ccCCHHHHHHHHHHhCCcEEEe
Q psy8722 114 ---------KKML------------------------GNDICLTIAGNKIDLE--KQ-RTVMQEDAEKYAQSVGAVHFHT 157 (223)
Q Consensus 114 ---------~~~~------------------------~~~~p~ivv~nK~Dl~--~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (223)
.... -..+|+++++||.|.. +. +....+.+.+++...+.+++.+
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 0000 0137999999999843 21 1234577888888889999999
Q ss_pred cCCCCCCHHHHHHH
Q psy8722 158 SAKMNRGIEEMFLE 171 (223)
Q Consensus 158 Sa~~~~~i~~~~~~ 171 (223)
||+...++.++...
T Consensus 242 SAk~E~el~eL~~~ 255 (368)
T 2dby_A 242 SARLEAELAELSGE 255 (368)
T ss_dssp CHHHHHHHHTSCHH
T ss_pred echhHHHHHHhchH
Confidence 99987666655544
No 199
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.53 E-value=4.2e-15 Score=127.62 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=80.2
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCC---CCCccccceeEEEEE-------------------------------
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFN---EKHITTLQASFLNKK------------------------------- 56 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~------------------------------- 56 (223)
......+|+|+|.+|+|||||+|+|++..+. ....+++........
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 3456789999999999999999999987663 333333321110000
Q ss_pred -----EEECCeE-EEEEEEeCCCccc-----------cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCC
Q psy8722 57 -----LNIAGKR-LNLAIWDTAGQER-----------FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN 119 (223)
Q Consensus 57 -----~~~~~~~-~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 119 (223)
..+++.. ..+.||||||... +......++..+|++|+|+|+++.........|+..+.. .
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~ 217 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---H 217 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---C
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---c
Confidence 0000000 2478999999764 334445567889999999999875444455556555433 3
Q ss_pred CCeEEEEEeCCCcccc
Q psy8722 120 DICLTIAGNKIDLEKQ 135 (223)
Q Consensus 120 ~~p~ivv~nK~Dl~~~ 135 (223)
+.|+++|+||+|+...
T Consensus 218 ~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 218 EDKIRVVLNKADMVET 233 (550)
T ss_dssp GGGEEEEEECGGGSCH
T ss_pred CCCEEEEEECCCccCH
Confidence 5799999999998643
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.52 E-value=6.1e-15 Score=120.10 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=62.2
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHH
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDA 143 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 143 (223)
+.+.++||+|.... .......+|.+++|+|+..+.....+.. ... ..|.++++||+|+...... ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~------~il--~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR------GII--EMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------------C--CSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH------HHH--hcCCEEEEeeecCCCchhH-HHHH
Confidence 46789999995321 1234578999999999987543222211 111 3578999999998532110 1112
Q ss_pred HHHHH----------HhCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 144 EKYAQ----------SVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 144 ~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
.++.. .++.+++.+||+++.|+++++++|.+.+..
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 22221 124578999999999999999999887643
No 201
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.52 E-value=2e-13 Score=120.76 Aligned_cols=119 Identities=17% Similarity=0.127 Sum_probs=82.7
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCC--------CC----------CCCccccceeEEEEEEEECC-----eEEEE
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDK--------FN----------EKHITTLQASFLNKKLNIAG-----KRLNL 66 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~-----~~~~~ 66 (223)
.+-++--||+|+|+.++|||||..+|+... .. .+....++.......+.+.+ ..+.+
T Consensus 8 ~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~i 87 (709)
T 4fn5_A 8 TPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRV 87 (709)
T ss_dssp SCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEE
T ss_pred CchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEE
Confidence 344667799999999999999999986211 10 01122233333333333432 35788
Q ss_pred EEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCc
Q psy8722 67 AIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132 (223)
Q Consensus 67 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (223)
.|+|||||.+|.......++-+|++|+|+|+.+.-......-|.+.... ++|.++++||+|.
T Consensus 88 NlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr 149 (709)
T 4fn5_A 88 NVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDR 149 (709)
T ss_dssp EEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSS
T ss_pred EEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEccccc
Confidence 8999999999999999999999999999999986554444445555544 6899999999996
No 202
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.51 E-value=5.8e-15 Score=128.98 Aligned_cols=112 Identities=19% Similarity=0.120 Sum_probs=79.0
Q ss_pred eEEEEECCCCCcHHHHHHHHh--hCCCCCC----------------CccccceeEEEEEEEECCeEEEEEEEeCCCcccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV--EDKFNEK----------------HITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF 77 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~--~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 77 (223)
.||+|+|+.++|||||..+|+ .+..... ...+++.......+.+++ ..+.|+|||||.+|
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~DF 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSST
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHHH
Confidence 489999999999999999986 2222110 001222222223334445 56778899999999
Q ss_pred ccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 78 HALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
.......++-+|++|+|+|+.+.-..+...-|...... ++|.++++||+|..
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~----~lp~i~~INKmDr~ 132 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM----GIPTIFFINKIDQN 132 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH----TCSCEECCEECCSS
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc----CCCeEEEEeccccc
Confidence 99999999999999999999986444443445444443 68999999999963
No 203
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.48 E-value=5.5e-13 Score=108.91 Aligned_cols=134 Identities=13% Similarity=0.037 Sum_probs=91.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc----c---ccccccc
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA----L---GPIYYRM 87 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~---~~~~~~~ 87 (223)
..+|+++|.||||||||+|+|++........++++.+.....+.+++ ..++++||||...... . .-..++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 46899999999999999999997666556667788888788888888 4577889999542211 1 1223578
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCccc--------cccCCHHHHHHHHHHhCC
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML--GNDICLTIAGNKIDLEK--------QRTVMQEDAEKYAQSVGA 152 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~ 152 (223)
+|++++|+|++++.. .......++.... -...|.++++||.|... ......++.+.+...+.+
T Consensus 150 ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~l 222 (376)
T 4a9a_A 150 CNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRI 222 (376)
T ss_dssp CSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC
T ss_pred cCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcc
Confidence 999999999998743 2222223333321 13467888999999632 123456667777666665
No 204
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.47 E-value=4.2e-13 Score=104.84 Aligned_cols=110 Identities=19% Similarity=0.070 Sum_probs=67.5
Q ss_pred EEEEEEeCCCccccccccc------cccccCCEEEEEEECCCH---HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 64 LNLAIWDTAGQERFHALGP------IYYRMSNGAVLVYDITDE---DSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
+.+.||||||......... ..+.. +++++++|.... ..+.....+.. ......+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFAL--LIDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHH--HHHHHHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHH--HHhcccCCCeEEEEecccccc
Confidence 4689999999765433221 13455 888889987543 22222211111 111123579999999999854
Q ss_pred cccCCHHHHHH----------------------------HHHHhC--CcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 135 QRTVMQEDAEK----------------------------YAQSVG--AVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 135 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
.... ++..+ ++..++ .+++++||+++.|+++++++|.+.+..
T Consensus 186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 3321 11111 123333 479999999999999999999877643
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.45 E-value=4.3e-14 Score=114.82 Aligned_cols=103 Identities=19% Similarity=0.169 Sum_probs=64.6
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCH--H
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQ--E 141 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~ 141 (223)
+.+.||||||...... .....+|++++|+|.........+.. .. .+.|.++|+||+|+........ +
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 5688999999654332 24588999999999976543211111 11 1358899999999854321110 1
Q ss_pred HHHHHHHHh-------CCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 142 DAEKYAQSV-------GAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 142 ~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
+..+..... ..+++.+||++|.|+++++++|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 222222222 356889999999999999999998765
No 206
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.42 E-value=7.1e-13 Score=105.83 Aligned_cols=97 Identities=21% Similarity=0.119 Sum_probs=80.2
Q ss_pred ccccccccccccccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC-HHHHHHHHHHhC
Q psy8722 74 QERFHALGPIYYRMSNGAVLVYDITDED-SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM-QEDAEKYAQSVG 151 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 151 (223)
++++..+...++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.....+. .++..+++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 6777888888999999999999999986 88888999987765 368999999999986543222 345566677788
Q ss_pred CcEEEecCCCCCCHHHHHHHHH
Q psy8722 152 AVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 152 ~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
++++++||+++.|++++++.+.
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHhhcc
Confidence 9999999999999999998764
No 207
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.41 E-value=5.6e-14 Score=123.59 Aligned_cols=157 Identities=15% Similarity=0.111 Sum_probs=94.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccce-----------------------------------------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQA----------------------------------------- 50 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~----------------------------------------- 50 (223)
....+|+|+|.+++|||||+|+|++..+ +.....++..
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3456999999999999999999998765 2221111100
Q ss_pred ---------eEEEEEEEECCeEEEEEEEeCCCccc-------------ccccccccc-ccCCEEEEEEECCCHHHHHHHH
Q psy8722 51 ---------SFLNKKLNIAGKRLNLAIWDTAGQER-------------FHALGPIYY-RMSNGAVLVYDITDEDSFEKVK 107 (223)
Q Consensus 51 ---------~~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~ 107 (223)
+.....+...+ ...+.|+||||-.. +......++ ..+|++++|+|++.........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 00111111111 12477899999443 112223333 5789999999998753322221
Q ss_pred HHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHH----hC-CcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 108 NWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS----VG-AVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 108 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~-~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
.+ +......+.|+++|+||+|+......... ..+ ... .+ .+++.+||+++.|++++++.+.+.
T Consensus 208 ~l---l~~L~~~g~pvIlVlNKiDlv~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KI---AKEVDPQGQRTIGVITKLDLMDEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HH---HHHHCTTCSSEEEEEECTTSSCTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HH---HHHHHhcCCCEEEEEeCcccCCcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 22 23333457899999999998654433221 111 001 12 246779999999999999988864
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.33 E-value=9e-13 Score=106.75 Aligned_cols=103 Identities=13% Similarity=0.153 Sum_probs=62.1
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHH
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDA 143 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 143 (223)
+.+.|+||+|..... ......+|.+++++|.........+..+ +. ..+.++++||+|+...........
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHHH
Confidence 568889999964321 1234789999999998654322111111 11 135577789999643222111222
Q ss_pred HHHHHH----------hCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 144 EKYAQS----------VGAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 144 ~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
.++... +..+++.+|+.++.|++++++.|.+.+.
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 233221 1357889999999999999999988654
No 209
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.30 E-value=1.6e-12 Score=106.65 Aligned_cols=90 Identities=13% Similarity=0.105 Sum_probs=52.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCe---------------EEEEEEEeCCCcccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGK---------------RLNLAIWDTAGQERF 77 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~ 77 (223)
...++|+++|.+|+|||||+|+|++........++++.+.....+.+++. ...+.+|||||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 55789999999999999999999977665555555555544445544432 135899999997754
Q ss_pred cc-------ccccccccCCEEEEEEECCCHHH
Q psy8722 78 HA-------LGPIYYRMSNGAVLVYDITDEDS 102 (223)
Q Consensus 78 ~~-------~~~~~~~~~d~~i~v~d~~~~~s 102 (223)
.. ....+++.+|++++|+|+.+..+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 43 23456789999999999986544
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.30 E-value=5.5e-11 Score=97.72 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=61.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCe-------------E--EEEEEEeCCCccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGK-------------R--LNLAIWDTAGQER 76 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------------~--~~~~i~D~~G~~~ 76 (223)
.+..+|+++|++|||||||+|.|++... .....++++.+.....+.+.+. . ..+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4567999999999999999999997665 5555565555554555555541 1 3578999999543
Q ss_pred ccc-------ccccccccCCEEEEEEECCC
Q psy8722 77 FHA-------LGPIYYRMSNGAVLVYDITD 99 (223)
Q Consensus 77 ~~~-------~~~~~~~~~d~~i~v~d~~~ 99 (223)
..+ .....++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 221 22334578999999999864
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=92.33 Aligned_cols=103 Identities=8% Similarity=-0.085 Sum_probs=67.5
Q ss_pred CccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHc-----CCCCeEEEEEeCC-CccccccCCHHHHHHH
Q psy8722 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML-----GNDICLTIAGNKI-DLEKQRTVMQEDAEKY 146 (223)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~~ 146 (223)
|++..+.+|..||.++|++|||+|.+|.+-++ ...-+..+.... ..+.|++|++||. |+. ...+..++.+.
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~e~ 187 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAHE 187 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHHHH
Confidence 78889999999999999999999999875433 222222222221 1468999999985 664 34455555544
Q ss_pred HHHh----CCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 147 AQSV----GAVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 147 ~~~~----~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
.... ...+..|||++|+|+.+.++||.+.+..
T Consensus 188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 3222 2246779999999999999999877643
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.07 E-value=1.1e-10 Score=91.01 Aligned_cols=107 Identities=8% Similarity=-0.094 Sum_probs=72.8
Q ss_pred CCCccccccccccccccCCEEEEEEECCCHHHHH---HHHHHHHHHHHH-cCCCCeEEEEEeC-CCccccccCCHHHHHH
Q psy8722 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFE---KVKNWVKELKKM-LGNDICLTIAGNK-IDLEKQRTVMQEDAEK 145 (223)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~~~~~-~~~~~p~ivv~nK-~Dl~~~~~~~~~~~~~ 145 (223)
.+|++..+.+|..|+.++|++|||+|.+|.+-++ .+.++...+... ...+.|++|++|| .|+.. ..+..++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence 3578889999999999999999999999976433 222222233222 1247899999996 57743 345555544
Q ss_pred HHHHh----CCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 146 YAQSV----GAVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 146 ~~~~~----~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
..... ...+..|||.+|+|+.+.++||.+.+..+
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 43221 12367799999999999999999877543
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.87 E-value=1.9e-10 Score=94.27 Aligned_cols=137 Identities=15% Similarity=0.187 Sum_probs=77.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC------CCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc----c---
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVED------KFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL----G--- 81 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----~--- 81 (223)
..+|+++|.+|+|||||+|+|.+. .......++++.+. ..+.+... +.++||||-...... .
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM--IEIPLESG---ATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE--EEEECSTT---CEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee--EEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHH
Confidence 357999999999999999999854 33333334444333 23333332 678899994322211 1
Q ss_pred -cccc--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEec
Q psy8722 82 -PIYY--RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTS 158 (223)
Q Consensus 82 -~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (223)
..++ ...+.++++++....-.+..+.. +......+.|+++++||.|....... ......+.+..+..+...+
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~ 311 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPS 311 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSC
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCC
Confidence 1111 56789999999843211111110 11122346899999999997543322 2333445555665544444
Q ss_pred CCC
Q psy8722 159 AKM 161 (223)
Q Consensus 159 a~~ 161 (223)
+..
T Consensus 312 ~~~ 314 (369)
T 3ec1_A 312 KRY 314 (369)
T ss_dssp GGG
T ss_pred chh
Confidence 443
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.85 E-value=3.7e-09 Score=86.54 Aligned_cols=96 Identities=23% Similarity=0.296 Sum_probs=73.7
Q ss_pred CccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHH----HHHHH
Q psy8722 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDA----EKYAQ 148 (223)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~~~ 148 (223)
..+.|.+....+++.++++++|+|+.++. ..|...+.+... +.|+++|+||+|+.... ...+.. .+++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 35678888888999999999999999863 456666766654 68999999999985432 233333 33466
Q ss_pred HhCC---cEEEecCCCCCCHHHHHHHHHHH
Q psy8722 149 SVGA---VHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 149 ~~~~---~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
..++ +++.+||+++.|++++++.|.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6777 78999999999999999888654
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.82 E-value=6.4e-09 Score=86.09 Aligned_cols=113 Identities=20% Similarity=0.177 Sum_probs=57.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCC----ccccceeEEEEEEEECCeEEEEEEEeCCCccccc-------------
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKH----ITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH------------- 78 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------------- 78 (223)
++++|+|++|+|||||++.|.+..+.... .+..............+-...+.++|++|.....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 56999999999999999999866432211 1111111111111212222367888998843210
Q ss_pred -----ccccc---------ccccC--CE-EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 79 -----ALGPI---------YYRMS--NG-AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 79 -----~~~~~---------~~~~~--d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
..... ....+ |+ ++++.|....-+...+ ..+.. ...+.|+|+|+||+|.-
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di----eilk~-L~~~~~vI~Vi~KtD~L 189 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL----VTMKK-LDSKVNIIPIIAKADAI 189 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH----HHHHH-TCSCSEEEEEESCGGGS
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH----HHHHH-HhhCCCEEEEEcchhcc
Confidence 00001 11222 33 5556666543332221 22222 23578999999999964
No 216
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.79 E-value=1.2e-08 Score=79.88 Aligned_cols=135 Identities=16% Similarity=0.144 Sum_probs=68.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCC--------c-cccceeEEEEEEEECCeE--EEEEEEeCCCcccccc----
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKH--------I-TTLQASFLNKKLNIAGKR--LNLAIWDTAGQERFHA---- 79 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~--~~~~i~D~~G~~~~~~---- 79 (223)
.++++++|+.|+|||||+|.|.+...+... . .+.... ...+..+... ..+.++|++|-.....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~--~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIK--AIGHVIEEGGVKMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCC--EEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeee--eeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence 589999999999999999999853332211 0 011111 1111122222 2578889998321100
Q ss_pred --cc----------------------ccccccCCEEEEEEECCC-HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 80 --LG----------------------PIYYRMSNGAVLVYDITD-EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 80 --~~----------------------~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
.. ...+..+++.++++|... +-.... ...+..+ ... +++++|++|.|.-.
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L---~~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL---SKV-VNIIPVIAKADTMT 154 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH---HTT-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH---Hhc-CcEEEEEeccccCC
Confidence 00 011233688888898542 211111 1222223 223 89999999999643
Q ss_pred cccC--CHHHHHHHHHHhCCcEEE
Q psy8722 135 QRTV--MQEDAEKYAQSVGAVHFH 156 (223)
Q Consensus 135 ~~~~--~~~~~~~~~~~~~~~~~~ 156 (223)
..+. ....+.+.....++.+|.
T Consensus 155 ~~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 155 LEEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHcCccccC
Confidence 3221 123344445566776654
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.73 E-value=6.4e-09 Score=88.07 Aligned_cols=152 Identities=15% Similarity=0.133 Sum_probs=83.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHh------hCCCC----CCCcccc-----------ceeEEEEEEE-------------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYV------EDKFN----EKHITTL-----------QASFLNKKLN------------- 58 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~------~~~~~----~~~~~~~-----------~~~~~~~~~~------------- 58 (223)
.+...|+++|.+|+||||+++.|. +.... ..+.+.. +..+......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 456789999999999999999997 22110 0000100 1111110000
Q ss_pred ECCeEEEEEEEeCCCcccccc-cc---ccc--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeE-EEEEeCCC
Q psy8722 59 IAGKRLNLAIWDTAGQERFHA-LG---PIY--YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICL-TIAGNKID 131 (223)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D 131 (223)
.....+.+.|+||||...... .. ... ...+|.+++|+|+...... ......+... .|+ ++|+||.|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~~----~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKDK----VDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHHH----HCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHhh----cCceEEEEeCCc
Confidence 000225688999999653221 11 111 2278999999999875321 1112223322 464 88899999
Q ss_pred ccccccCCHHHHHHHHHHhCCcE------------------EEecCCCCCC-HHHHHHHHHHH
Q psy8722 132 LEKQRTVMQEDAEKYAQSVGAVH------------------FHTSAKMNRG-IEEMFLELSQR 175 (223)
Q Consensus 132 l~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~~~~~i~~~ 175 (223)
...... .........+.|+ +.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 753221 1222334455543 2368888888 88888887654
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.73 E-value=1.4e-07 Score=77.99 Aligned_cols=161 Identities=13% Similarity=0.097 Sum_probs=84.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCcccc-ceeEEE-EEEEECCeEEEEEEEeCCCcccccccccc-----cccc
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTL-QASFLN-KKLNIAGKRLNLAIWDTAGQERFHALGPI-----YYRM 87 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-----~~~~ 87 (223)
...++|+|++|+|||||+|.+.+...+..-.-.. +.+... ..+.-......+.+||++|.......... -+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 4489999999999999999998643322211111 111000 11111111114678999984321111111 1233
Q ss_pred CCEEEEEEECC--CHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc-------ccccCCHHHH----HHHH----HHh
Q psy8722 88 SNGAVLVYDIT--DEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE-------KQRTVMQEDA----EKYA----QSV 150 (223)
Q Consensus 88 ~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-------~~~~~~~~~~----~~~~----~~~ 150 (223)
.+..++ ++.. ...-. .+...+.. .+.|+++|.||.|+- .-.....+++ .++. ...
T Consensus 149 ~~~~~~-lS~G~~~kqrv----~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 149 YDFFII-ISATRFKKNDI----DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp CSEEEE-EESSCCCHHHH----HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCeEE-eCCCCccHHHH----HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 455554 7765 22211 11122222 357999999999962 1122233333 3332 122
Q ss_pred C---CcEEEecC--CCCCCHHHHHHHHHHHHHHHHHHH
Q psy8722 151 G---AVHFHTSA--KMNRGIEEMFLELSQRMLEKAQEF 183 (223)
Q Consensus 151 ~---~~~~~~Sa--~~~~~i~~~~~~i~~~~~~~~~~~ 183 (223)
+ ...+.+|+ ..+.|++++.+.+.+.+.+....+
T Consensus 221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~ 258 (413)
T 1tq4_A 221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHN 258 (413)
T ss_dssp TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHH
T ss_pred CCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhH
Confidence 2 25678898 556679999999988775555443
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.73 E-value=7.6e-10 Score=90.60 Aligned_cols=131 Identities=15% Similarity=0.215 Sum_probs=71.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCC-------CCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc----c--
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFN-------EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL----G-- 81 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----~-- 81 (223)
..+|+++|.+|+|||||+|+|.+.... ....+.++.+. ..+.+... +.++||||-...... .
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~ 234 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDL--IDIPLDEE---SSLYDTPGIINHHQMAHYVGKQ 234 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CE--EEEESSSS---CEEEECCCBCCTTSGGGGSCHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecce--EEEEecCC---eEEEeCCCcCcHHHHHHHhhHH
Confidence 358999999999999999999854211 12223333222 22333332 678899995332211 1
Q ss_pred --ccc--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEE
Q psy8722 82 --PIY--YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHF 155 (223)
Q Consensus 82 --~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 155 (223)
..+ ....+..+++++......+..+.. +......+.|+++++||.|...... .......+.+..|..++
T Consensus 235 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~-~~~~~~~~~~~~g~~l~ 307 (368)
T 3h2y_A 235 SLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTK-LEKADELYKNHAGDLLS 307 (368)
T ss_dssp HHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE-HHHHHHHHHHHBTTTBC
T ss_pred HHHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccccc-HHHHHHHHHHHhCCccC
Confidence 111 256788888888743211111100 1112234689999999999754432 23333444455554433
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.67 E-value=1.1e-08 Score=83.76 Aligned_cols=96 Identities=19% Similarity=0.210 Sum_probs=71.7
Q ss_pred CccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHH----HHHH
Q psy8722 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAE----KYAQ 148 (223)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~ 148 (223)
.++.|.+....++..++++++|+|+.++.+ .|...+.+... +.|+++|+||+|+.... ...+... +++.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 477888888888899999999999999763 45555555543 68999999999985432 2233333 3456
Q ss_pred HhCC---cEEEecCCCCCCHHHHHHHHHHH
Q psy8722 149 SVGA---VHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 149 ~~~~---~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
..|. .++.+||+++.|++++++.+.+.
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 6676 68999999999999999888654
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.65 E-value=3.5e-08 Score=77.80 Aligned_cols=100 Identities=10% Similarity=0.031 Sum_probs=71.0
Q ss_pred eCCCcc-ccccccccccccCCEEEEEEECCCHHHHH--HHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHH
Q psy8722 70 DTAGQE-RFHALGPIYYRMSNGAVLVYDITDEDSFE--KVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKY 146 (223)
Q Consensus 70 D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 146 (223)
..|||. +........+.++|+++.|+|+.++.+.. .+.+|+ .++|.++|+||+|+..... .+...++
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~~~ 74 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWKEH 74 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHHHH
Confidence 688876 44455566789999999999999987654 344333 3689999999999865321 2333445
Q ss_pred HHHhCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 147 AQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 147 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
....+++++.+||.++.|+.++++.+.+.+...
T Consensus 75 ~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 75 FENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 555678999999999999999999887776544
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.49 E-value=1.1e-07 Score=74.86 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=35.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCC-CCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDK-FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
...++|+++|.+|+|||||+|+|.+.. ......++++.+.. .+.... .+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcC
Confidence 456899999999999999999999654 33343444443332 222332 47789999954
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.39 E-value=1.2e-07 Score=73.92 Aligned_cols=56 Identities=14% Similarity=0.260 Sum_probs=34.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 76 (223)
++++++|.+|+|||||+|+|.+.... ....++.+... ..+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGI--QWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCS--CEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccce--EEEEeCC---CEEEEECCCccc
Confidence 69999999999999999999965542 22223222222 2222222 478999999653
No 224
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.23 E-value=9.2e-07 Score=76.21 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=24.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~ 39 (223)
.+.++|+|+|.+|+|||||+|+|.+..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 567899999999999999999999665
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.19 E-value=3.1e-06 Score=70.44 Aligned_cols=86 Identities=20% Similarity=0.082 Sum_probs=50.8
Q ss_pred EEEEEEeCCCcccccccc----c--cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 64 LNLAIWDTAGQERFHALG----P--IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
+.+.|+||+|........ . .....+|.+++|+|+...... ......+... -.+..+|+||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~---~~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA---TPIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS---CTTEEEEEECCSSCSS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh---CCCeEEEEECCCCccc--
Confidence 568889999944322111 1 112357899999998864332 2222333332 2355688999997432
Q ss_pred CCHHHHHHHHHHhCCcEEEecC
Q psy8722 138 VMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
.-.+..+....+.|+.+++.
T Consensus 255 --gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 255 --GGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp --HHHHHHHHHTTCCCEEEEEC
T ss_pred --ccHHHHHHHHHCCCEEEEEc
Confidence 23345556678888877765
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.13 E-value=7.5e-07 Score=69.40 Aligned_cols=94 Identities=16% Similarity=0.024 Sum_probs=62.2
Q ss_pred CCCccc-cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHH
Q psy8722 71 TAGQER-FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS 149 (223)
Q Consensus 71 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (223)
.|||.. ........+.++|+++.|+|+.++.+..... +. .. ++|.++|+||+|+..... .+...++...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l~-ll--~k~~iivlNK~DL~~~~~--~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-----VD-FS--RKETIILLNKVDIADEKT--TKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-----SC-CT--TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-----HH-hc--CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence 577653 2344566778999999999999986653211 11 11 589999999999865321 2333445556
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 150 VGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 150 ~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
.+.++ .+||.++.|+.++++.+...
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 68888 99999999999988776543
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.07 E-value=1.4e-05 Score=66.65 Aligned_cols=83 Identities=20% Similarity=0.070 Sum_probs=47.3
Q ss_pred EEEEEEeCCCcccccc-cc-----ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCC-e-EEEEEeCCCcccc
Q psy8722 64 LNLAIWDTAGQERFHA-LG-----PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDI-C-LTIAGNKIDLEKQ 135 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~-~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~Dl~~~ 135 (223)
+.+.|+||||...... .. ......+|.+++|+|+..... .......+. ... | ..+|+||.|....
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCST
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCccc
Confidence 5678889999553211 11 111236899999999876431 111122222 234 5 7889999997422
Q ss_pred ccCCHHHHHHHHHHhCCcEEEe
Q psy8722 136 RTVMQEDAEKYAQSVGAVHFHT 157 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~ 157 (223)
......+....+.++..+
T Consensus 254 ----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 254 ----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp ----THHHHHHHHHSSCCEEEE
T ss_pred ----hHHHHHHHHHHCCCEEEe
Confidence 123344666677776554
No 228
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.00 E-value=3.6e-06 Score=66.91 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=60.1
Q ss_pred cccccccccCCEEEEEEECCCHHH-HHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc--CCHHHHHHHHHHhCCcEE
Q psy8722 79 ALGPIYYRMSNGAVLVYDITDEDS-FEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT--VMQEDAEKYAQSVGAVHF 155 (223)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 155 (223)
.+......++|.+++|+|+.++.. ...+.+++...+. .++|.++|+||+|+..... ...+...+.....|.+++
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 334456789999999999997653 3344554444333 3689999999999965432 012344455556788999
Q ss_pred EecCCCCCCHHHHHH
Q psy8722 156 HTSAKMNRGIEEMFL 170 (223)
Q Consensus 156 ~~Sa~~~~~i~~~~~ 170 (223)
.+|+.++.|+++++.
T Consensus 155 ~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 155 LTSSKDQDSLADIIP 169 (307)
T ss_dssp ECCHHHHTTCTTTGG
T ss_pred EEecCCCCCHHHHHh
Confidence 999988887765543
No 229
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.84 E-value=1.8e-05 Score=68.89 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFN 41 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~ 41 (223)
.|+|+|+.|||||||++.+.+-..+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 3999999999999999999876433
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.83 E-value=2.3e-05 Score=62.13 Aligned_cols=90 Identities=21% Similarity=0.127 Sum_probs=54.0
Q ss_pred EEEEEEeCCCccc--ccc-ccc-----cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccc
Q psy8722 64 LNLAIWDTAGQER--FHA-LGP-----IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEK 134 (223)
Q Consensus 64 ~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 134 (223)
+.+.|+||||... ... ... .....+|.+++|+|..... ........+.. ..+ ..+|+||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 5688899999665 211 111 1234689999999986432 12222222322 245 678899999642
Q ss_pred cccCCHHHHHHHHHHhCCcEEEecCCCCCCHH
Q psy8722 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (223)
....+..+....+.|+..++ .|++++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~ 279 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG--TGEKID 279 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred ----chHHHHHHHHHHCcCEEEEe--CCCChh
Confidence 23345567778888887766 355554
No 231
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.81 E-value=1.2e-05 Score=66.81 Aligned_cols=90 Identities=17% Similarity=0.090 Sum_probs=53.7
Q ss_pred EEEEEEeCCCccc--ccc-cc---cc--ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc
Q psy8722 64 LNLAIWDTAGQER--FHA-LG---PI--YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135 (223)
Q Consensus 64 ~~~~i~D~~G~~~--~~~-~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (223)
+.+.|+||||... ... .. .. .....+.+++|+|+...... ......+.... .+..+|+||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~~---~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQAS---PIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHHC---SSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhccc---CCcEEEEecccccc-
Confidence 5677889999543 111 11 11 11246899999999865332 22223344332 35678999999642
Q ss_pred ccCCHHHHHHHHHHhCCcEEEecCCCCCCH
Q psy8722 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (223)
..-.+.......+.|+.+++. |+++
T Consensus 253 ---~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ---KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 234455666678999877775 5544
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.79 E-value=8.3e-05 Score=60.28 Aligned_cols=84 Identities=15% Similarity=0.200 Sum_probs=56.9
Q ss_pred ccccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC-CHHHHHHHHHHhCCcEEEecCCC
Q psy8722 84 YYRMSNGAVLVYDITDED-SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV-MQEDAEKYAQSVGAVHFHTSAKM 161 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~ 161 (223)
...++|.+++|.+.. +. +...+..++...... ++|.++|+||+|+...... ..+.........|++++.+|+.+
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 468899999887654 54 344455565554443 5788999999998654210 01223334456788999999999
Q ss_pred CCCHHHHHHH
Q psy8722 162 NRGIEEMFLE 171 (223)
Q Consensus 162 ~~~i~~~~~~ 171 (223)
+.|++++...
T Consensus 203 ~~gl~~L~~~ 212 (358)
T 2rcn_A 203 QDGLKPLEEA 212 (358)
T ss_dssp TBTHHHHHHH
T ss_pred CcCHHHHHHh
Confidence 9999887654
No 233
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.79 E-value=1.1e-06 Score=74.23 Aligned_cols=110 Identities=12% Similarity=0.066 Sum_probs=62.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc--ccccc--------c
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER--FHALG--------P 82 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~--------~ 82 (223)
...++|+++|.+|+||||+.++|...... ....+.............+......+||..|.+. ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999998743211 1111111100000000111112346789988732 22222 4
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEE
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAG 127 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~ 127 (223)
.++...++.++|+|.++. +......|+..+... +.+++++-
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~ 156 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVE 156 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEE
Confidence 455567888999999987 456666777776654 34555444
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.71 E-value=4.8e-05 Score=63.48 Aligned_cols=26 Identities=15% Similarity=0.051 Sum_probs=22.7
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
..+-.-|+|+|++++|||+|+|.|++
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhh
Confidence 34667799999999999999999985
No 235
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.35 E-value=0.00012 Score=53.40 Aligned_cols=22 Identities=45% Similarity=0.733 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+++++|++|+|||||++.+.+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999874
No 236
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.24 E-value=0.00017 Score=52.57 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
--++|+|++|||||||++.|..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999974
No 237
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.21 E-value=0.00019 Score=53.21 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
-.++|+|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999874
No 238
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.08 E-value=0.0003 Score=51.56 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
++|+|++|||||||++.|.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999974
No 239
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.07 E-value=0.00032 Score=51.93 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-|+|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999998753
No 240
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.04 E-value=0.00034 Score=52.15 Aligned_cols=22 Identities=45% Similarity=0.471 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
=-++|+|++|||||||++.+.+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3588999999999999999874
No 241
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.02 E-value=0.00037 Score=52.61 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
--++|+|++|||||||++.+.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36889999999999999998843
No 242
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.00 E-value=0.00038 Score=52.41 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.++|+|++|+|||||++.+.+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999885
No 243
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.00 E-value=0.0004 Score=51.45 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=20.7
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+.--|+|+|++|+|||||++.|..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 444688999999999999999984
No 244
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.99 E-value=0.00025 Score=56.27 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.-.++|+|++|+|||||+|.|.+.
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCEEEEECCCCCCHHHHHHHhccc
Confidence 347899999999999999999753
No 245
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.98 E-value=0.00043 Score=50.84 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
|+|+||+|||||||+++|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999973
No 246
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.98 E-value=0.00039 Score=50.88 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
-.|+|+|++|||||||++.|...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999764
No 247
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.96 E-value=0.00045 Score=49.92 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=17.6
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
-++++|++|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999754
No 248
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.96 E-value=0.0045 Score=51.53 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=44.9
Q ss_pred EEEEEEeCCCcccccc-ccc-----cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccc
Q psy8722 64 LNLAIWDTAGQERFHA-LGP-----IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQR 136 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~ 136 (223)
+.+.|+||||...... ... .....++.+++|+|+..... .......+... .+ ..+|+||.|.....
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~~----l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNEA----LPLTGVVLTKVDGDARG 256 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHHH----SCCCCEEEECTTSSSCC
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhcc----CCCeEEEEecCCCCccH
Confidence 5688889999543321 111 11346889999999875432 22222233322 33 34688999964322
Q ss_pred cCCHHHHHHHHHHhCCcEEE
Q psy8722 137 TVMQEDAEKYAQSVGAVHFH 156 (223)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~ 156 (223)
..+..+....+.|+..
T Consensus 257 ----g~~l~i~~~~~~Pi~~ 272 (433)
T 2xxa_A 257 ----GAALSIRHITGKPIKF 272 (433)
T ss_dssp ----THHHHHHHHHCCCEEE
T ss_pred ----HHHHHHHHHHCCCeEE
Confidence 2333555566765433
No 249
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.95 E-value=0.0004 Score=51.44 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
..|+|+|++||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 250
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.95 E-value=0.00049 Score=51.32 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=22.4
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
..+...|+|+|++|+|||||++.+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35567899999999999999998874
No 251
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.92 E-value=0.00051 Score=51.26 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
--|+|+|++|||||||++.|...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45889999999999999999854
No 252
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.88 E-value=0.0006 Score=48.71 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999998543
No 253
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.88 E-value=0.00054 Score=52.26 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|||||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999988753
No 254
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.86 E-value=0.00068 Score=51.01 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
..|+++|++|+||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 255
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.80 E-value=0.00072 Score=50.20 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
..-|+|+|++|||||||++.|..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999974
No 256
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.78 E-value=0.00076 Score=48.46 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
..|+|+|++|+||||+.+.|..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 257
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.78 E-value=0.00079 Score=50.09 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.0
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+...|+|+|+.|+|||||++.|.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998874
No 258
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.77 E-value=0.00074 Score=49.36 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.++++|++|+|||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999974
No 259
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.77 E-value=0.00068 Score=51.31 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988753
No 260
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.77 E-value=0.0008 Score=51.48 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998754
No 261
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.76 E-value=0.00079 Score=49.79 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=21.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCC
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~ 39 (223)
...|+|+|++||||||+++.|....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3478999999999999999987543
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.76 E-value=0.00089 Score=47.89 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=18.5
Q ss_pred eEEEEECCCCCcHHHHHHHH
Q psy8722 16 FKVVLLGEGCVGKTSVVLRY 35 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l 35 (223)
..|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 263
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.74 E-value=0.00091 Score=51.17 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
.-.|+|+|++|||||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999987
No 264
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.73 E-value=0.00091 Score=47.86 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
.|+|.|++||||||+.+.|.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999986
No 265
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.73 E-value=0.00088 Score=54.28 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
.++|+|++|+|||||+|.|.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999998543
No 266
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.73 E-value=0.00084 Score=52.07 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988754
No 267
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.72 E-value=0.00086 Score=52.41 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|||||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988753
No 268
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.72 E-value=0.0013 Score=47.87 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=23.6
Q ss_pred CCCCCCCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 7 DRNSSSTYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 7 ~~~~~~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+.....+...|+++|.+|+||||+.+.|..
T Consensus 5 ~~~~~~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 5 TTYKCIEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp ---CCCSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3444555677899999999999999998863
No 269
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.71 E-value=0.00094 Score=49.88 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=19.2
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
++|+|.|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999985
No 270
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.71 E-value=0.00092 Score=50.23 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998754
No 271
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.70 E-value=0.00096 Score=49.36 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.|+|+|++|+|||||++.|..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 272
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.70 E-value=0.00091 Score=49.24 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.++++|+.|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 588999999999999999874
No 273
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.69 E-value=0.00099 Score=49.79 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=19.2
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
++|+|+|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999985
No 274
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.69 E-value=0.001 Score=50.79 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999988754
No 275
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.68 E-value=0.0012 Score=48.71 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
....+.|+|+|++|+||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999998863
No 276
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.68 E-value=0.00094 Score=51.63 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998754
No 277
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.67 E-value=0.0011 Score=50.80 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998754
No 278
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.67 E-value=0.001 Score=47.97 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
..|+|.|++|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999975
No 279
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.66 E-value=0.0011 Score=50.97 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998754
No 280
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.65 E-value=0.001 Score=51.61 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5789999999999999988754
No 281
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.65 E-value=0.0013 Score=51.03 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999998754
No 282
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.65 E-value=0.0012 Score=50.19 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988754
No 283
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.65 E-value=0.0014 Score=47.11 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.|+|+|++|+||||+.+.|..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999998863
No 284
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.64 E-value=0.0011 Score=51.47 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.=.++|+|++|+|||||++.+.+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 33689999999999999999874
No 285
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.63 E-value=0.0011 Score=50.74 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988754
No 286
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.62 E-value=0.0011 Score=50.96 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998754
No 287
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.62 E-value=0.0012 Score=52.35 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
=.++|+|++|+|||||++.|.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 3689999999999999999874
No 288
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.62 E-value=0.0011 Score=48.12 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.++++|++|+|||||++.+.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998874
No 289
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.62 E-value=0.0012 Score=49.48 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~ 36 (223)
+...|+|+|++||||||+.+.|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44789999999999999999886
No 290
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.62 E-value=0.0011 Score=51.17 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998754
No 291
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.61 E-value=0.0012 Score=50.85 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 292
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.59 E-value=0.0013 Score=48.52 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
.-.|+++|++|+||||+.+.|.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 3479999999999999999886
No 293
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.59 E-value=0.0014 Score=48.96 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.0
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
++|+|+|+|||||+|....|.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999998876
No 294
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.59 E-value=0.0013 Score=50.95 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999998753
No 295
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.58 E-value=0.0013 Score=51.21 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998864
No 296
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.58 E-value=0.0013 Score=50.14 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.9
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
=-++++|++|+|||||++.+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 368899999999999999887
No 297
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.57 E-value=0.0014 Score=51.37 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|+.|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999988754
No 298
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.57 E-value=0.0014 Score=51.77 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
.++++|++|+|||||+|.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 68899999999999999998543
No 299
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.57 E-value=0.0017 Score=47.22 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
...|+++|++||||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
No 300
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.57 E-value=0.0013 Score=47.40 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
..|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
No 301
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.56 E-value=0.0012 Score=52.20 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
-.++++|++|+|||||+|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 302
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.56 E-value=0.0014 Score=47.53 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-++++|++|+|||||++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3588999999999999999984
No 303
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.55 E-value=0.0015 Score=48.13 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998863
No 304
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.55 E-value=0.001 Score=49.77 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998854
No 305
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.55 E-value=0.0021 Score=51.17 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.7
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
..+..-|+|+|++|+|||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 45677899999999999999998874
No 306
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.54 E-value=0.0014 Score=51.03 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|+.|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988754
No 307
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.54 E-value=0.0013 Score=50.68 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988754
No 308
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.54 E-value=0.0014 Score=48.44 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+|+|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999875
No 309
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0015 Score=49.34 Aligned_cols=135 Identities=8% Similarity=0.009 Sum_probs=64.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEE-eCCC-ccccc----c-cccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW-DTAG-QERFH----A-LGPIYY 85 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-D~~G-~~~~~----~-~~~~~~ 85 (223)
.+.+=|++-|+++.||++|++++.+..... .. ......+..+.....+-|| |.-. ...+. + ......
T Consensus 27 ~nkilvl~~~~~~~~~~~~~~~lf~~~~~~---~~---i~k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EVR 100 (233)
T 3uc9_A 27 QNKILVLSDHPHNFLKTQFLQDLFHCSSTG---IS---IVKDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPLR 100 (233)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHHHCCCCCS---SC---EEEEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHHH
T ss_pred CCceEEEecCcccccHHHHHHHHhcccccc---cc---cccCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHHH
Confidence 444445555999999999999998652211 11 1223334555666667666 5433 11111 1 111112
Q ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEe
Q psy8722 86 RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHT 157 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (223)
.-..++|+||+...+...+.+.. ..........+++|+.-.+.........++....+..+|+.|+..
T Consensus 101 ~viggII~~f~~p~~~~~~~i~~----~~~~~~~dg~~v~Vg~~~~~~~~~~de~~e~~~~~~~~GfE~V~~ 168 (233)
T 3uc9_A 101 NVMAGIILITDIRQTKPQELLHQ----FMIAAHRNTFVVLVNVNEEVEQDEIDELNEIWSNAFTNVIEFVNW 168 (233)
T ss_dssp HTEEEEEEEECHHHHCGGGTHHH----HHHHSCTTCEEEEEECCTTCCHHHHHHHHHHHTTSSSSCEEEEEC
T ss_pred HhcceEEEEEeCCCcchHHHHHH----HhccCCCCceEEEEecCCccCCCchhhHHHHHHHHHhcCeEEEEe
Confidence 23478999998655444333332 222233344455554333221110001122222233456777764
No 310
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.52 E-value=0.00084 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=15.3
Q ss_pred eEEEEECCCCCcHHHHHHHHh-hC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV-ED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~-~~ 38 (223)
--|+|+|++|||||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 368999999999999999998 54
No 311
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.51 E-value=0.0017 Score=48.13 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 312
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.51 E-value=0.0014 Score=50.91 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998754
No 313
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.50 E-value=0.0017 Score=47.32 Aligned_cols=21 Identities=29% Similarity=0.178 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
..|+|.|++||||||+.+.|.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999986
No 314
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.50 E-value=0.0019 Score=49.41 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
.+.++|+|.|++||||||+.+.|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 356799999999999999999986
No 315
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.50 E-value=0.0016 Score=47.46 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
...|+|.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 316
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.49 E-value=0.0021 Score=47.65 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.+...|+|+|++|+||||+.+.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44568999999999999999998753
No 317
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.48 E-value=0.0019 Score=47.02 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.0
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+..+|+|+|++|+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 318
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.47 E-value=0.0018 Score=47.05 Aligned_cols=21 Identities=33% Similarity=0.317 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
.+|+++|++|+||||+.+.|.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999986
No 319
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.46 E-value=0.0017 Score=47.26 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.|+|.|++|+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
No 320
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.45 E-value=0.0055 Score=51.01 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=39.8
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHh---h---------------CCCCCC---CccccceeEEEEEEEE---CCeEEEEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYV---E---------------DKFNEK---HITTLQASFLNKKLNI---AGKRLNLA 67 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~---~---------------~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~ 67 (223)
..+-.-|.|+|+.++|||+|+|.|+ . ..|... ...|.|.-.....+.+ ++....+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 3566778899999999999999654 1 222221 1223333322222211 56678899
Q ss_pred EEeCCCccc
Q psy8722 68 IWDTAGQER 76 (223)
Q Consensus 68 i~D~~G~~~ 76 (223)
+.||.|...
T Consensus 144 llDTEG~~d 152 (457)
T 4ido_A 144 LMDTQGTFD 152 (457)
T ss_dssp EEEECCBTC
T ss_pred EEeccCCCC
Confidence 999999543
No 321
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.44 E-value=0.0015 Score=49.01 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-++|+|++|+|||||++.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999975
No 322
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.44 E-value=0.0021 Score=47.47 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=20.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+.-.|+|+|++|+||||+.+.|..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 323
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.44 E-value=0.0016 Score=48.60 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.2
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
++|+|.|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999886
No 324
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.44 E-value=0.0021 Score=49.14 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+...|+|+|+.|+|||||++.|.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 325
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.44 E-value=0.002 Score=49.91 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987654
No 326
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.41 E-value=0.0032 Score=43.89 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=19.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
...|++.|++|+|||++.+.+..
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCcEEEECCCCccHHHHHHHHHH
Confidence 34699999999999999987753
No 327
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.40 E-value=0.0022 Score=50.40 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=22.5
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
...+..-|+|.|++||||||+.+.|..
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999999863
No 328
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.40 E-value=0.0014 Score=52.05 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.++|+|+.|+|||||++.+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 689999999999999998864
No 329
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.40 E-value=0.001 Score=48.19 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.|+|+|++|+|||||++.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 330
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.39 E-value=0.0018 Score=52.65 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.-+++|+|++|+|||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998753
No 331
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.38 E-value=0.0023 Score=46.63 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
...|+|.|.+||||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
No 332
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.38 E-value=0.0026 Score=50.73 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.1
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
....+-|+|+|++|||||||++.|.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 4567889999999999999999886
No 333
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.38 E-value=0.0023 Score=47.36 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
...|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36799999999999999999863
No 334
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.33 E-value=0.0025 Score=45.44 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998863
No 335
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.33 E-value=0.0021 Score=46.36 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
+|+|+|++|+||||+.+.|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 69999999999999999885
No 336
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.32 E-value=0.003 Score=49.66 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=21.8
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
..+...|+|+|++|+|||||++.|.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4567789999999999999998875
No 337
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.32 E-value=0.0021 Score=48.44 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
...|+|+|++||||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999886
No 338
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.31 E-value=0.0022 Score=52.00 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++++|+.|||||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 5789999999999999988754
No 339
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.29 E-value=0.0019 Score=49.63 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=22.8
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.......|+++|++|+||||+.+.|..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345567899999999999999999863
No 340
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.29 E-value=0.0027 Score=45.94 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
...|+++|++|+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4579999999999999999886
No 341
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.29 E-value=0.0027 Score=46.76 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
...|+|.|++||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999998753
No 342
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.29 E-value=0.0022 Score=50.47 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5889999999999999988754
No 343
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.28 E-value=0.0025 Score=51.65 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.|+|+|++|+|||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999874
No 344
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.27 E-value=0.0024 Score=51.73 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++++|+.|+|||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998754
No 345
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.27 E-value=0.0026 Score=47.87 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=19.0
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
+.|+|.|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999886
No 346
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.27 E-value=0.0024 Score=51.70 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
-++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999987643
No 347
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.27 E-value=0.0027 Score=46.67 Aligned_cols=26 Identities=15% Similarity=0.059 Sum_probs=22.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.+...|+|+|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999998754
No 348
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.26 E-value=0.0024 Score=49.74 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
++++|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999875
No 349
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.26 E-value=0.0037 Score=46.06 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
.+...|+|.|++|+||||+.+.|.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 445689999999999999999886
No 350
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.24 E-value=0.0025 Score=51.68 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++++|+.|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 5789999999999999998754
No 351
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.24 E-value=0.0026 Score=51.97 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999987543
No 352
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.23 E-value=0.0026 Score=51.64 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++++|+.|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5789999999999999998754
No 353
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.22 E-value=0.0031 Score=45.45 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
-.+++.|++|+|||+|++.+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 354
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.22 E-value=0.0032 Score=49.91 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=21.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+...|+|+|+.|+|||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999998874
No 355
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.20 E-value=0.0027 Score=50.30 Aligned_cols=85 Identities=14% Similarity=0.044 Sum_probs=45.7
Q ss_pred EEEEEeCCCcccccc-cc-----------ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCc
Q psy8722 65 NLAIWDTAGQERFHA-LG-----------PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132 (223)
Q Consensus 65 ~~~i~D~~G~~~~~~-~~-----------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (223)
.+.+.|++|...... .. .......+.++++.|...... +...+..+.... + ..++++||.|.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~---~~~~~~~~~~~~--~-~t~iivTh~d~ 259 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN---GLEQAKKFHEAV--G-LTGVIVTKLDG 259 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH---HHHHHHHHHHHH--C-CSEEEEECTTS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH---HHHHHHHHHHHc--C-CcEEEEECCcc
Confidence 356779999532211 00 112345777888999876543 222223333322 2 34577899885
Q ss_pred cccccCCHHHHHHHHHHhCCcEEEecC
Q psy8722 133 EKQRTVMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
.... -.+.......+.|+.++..
T Consensus 260 ~a~g----g~~l~i~~~~~~pi~~ig~ 282 (304)
T 1rj9_A 260 TAKG----GVLIPIVRTLKVPIKFVGV 282 (304)
T ss_dssp SCCC----TTHHHHHHHHCCCEEEEEC
T ss_pred cccc----cHHHHHHHHHCCCeEEEeC
Confidence 3221 2234556677888776653
No 356
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.19 E-value=0.0023 Score=48.02 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
...|+|+|++||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999886
No 357
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.19 E-value=0.0029 Score=48.48 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
++++|++|+|||||++.+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999874
No 358
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.18 E-value=0.0036 Score=46.26 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=21.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+...|+|+|++|+|||||++.|..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999998863
No 359
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.18 E-value=0.0028 Score=51.60 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++++|+.|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5789999999999999998754
No 360
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.18 E-value=0.0028 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999987543
No 361
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.18 E-value=0.003 Score=48.57 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
...|+|+|++|+||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999886
No 362
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.17 E-value=0.0028 Score=46.34 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
...|+|.|++||||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999886
No 363
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.17 E-value=0.002 Score=45.39 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
-.++++|++|+|||+|++.+.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999874
No 364
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.15 E-value=0.0035 Score=47.44 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=22.9
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
..+..-|+|.|+.|+|||||++.|.+.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 355678999999999999999988753
No 365
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.15 E-value=0.003 Score=46.85 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
...|+|.|++||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999863
No 366
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.14 E-value=0.0035 Score=47.47 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
....+|+|+|++|+||||+.+.|.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999886
No 367
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.14 E-value=0.0032 Score=51.39 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
=.|+|+|++|+|||||++.+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999999874
No 368
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.13 E-value=0.0031 Score=49.88 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~ 36 (223)
+.--++++|+.|+||||+++.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 44578999999999999999875
No 369
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.12 E-value=0.0037 Score=46.33 Aligned_cols=24 Identities=25% Similarity=0.156 Sum_probs=20.9
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999863
No 370
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.12 E-value=0.004 Score=44.90 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
..|.++|++|+|||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999874
No 371
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.12 E-value=0.0035 Score=45.64 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 372
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.11 E-value=0.0027 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
-.++|+|++|+|||||++.+.+-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 38999999999999999999753
No 373
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.11 E-value=0.004 Score=46.49 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 374
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.11 E-value=0.0028 Score=50.84 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|++|+|||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999998754
No 375
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.10 E-value=0.0024 Score=51.60 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++++|+.|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 5789999999999999998754
No 376
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.10 E-value=0.0041 Score=45.20 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
..|+|.|++|+||||+.+.|.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999886
No 377
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.07 E-value=0.0034 Score=48.29 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
-|+|+|++|+|||||.+.|.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 47899999999999999885
No 378
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.06 E-value=0.0039 Score=45.57 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 379
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.05 E-value=0.0035 Score=46.91 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
.++|+|+|++||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999886
No 380
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.05 E-value=0.0015 Score=48.61 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999863
No 381
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.04 E-value=0.0032 Score=46.10 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
...|+|.|++|+||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 382
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.02 E-value=0.0036 Score=51.85 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.|+|+|+.|+|||||++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998753
No 383
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.98 E-value=0.0043 Score=44.38 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998863
No 384
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.98 E-value=0.0044 Score=47.07 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=20.2
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~ 36 (223)
+.+.|++.|++|+||||+.+.+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999886
No 385
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.97 E-value=0.0041 Score=48.36 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
|+++|++|+|||||++.+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 99999999999999999874
No 386
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.97 E-value=0.0054 Score=49.12 Aligned_cols=90 Identities=14% Similarity=0.147 Sum_probs=50.6
Q ss_pred EEEEEeCCCcccccccc-cc-----ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC
Q psy8722 65 NLAIWDTAGQERFHALG-PI-----YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV 138 (223)
Q Consensus 65 ~~~i~D~~G~~~~~~~~-~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (223)
.+.++|++|........ .. ..-..|-.+++.|..... .+......+.... -.-.+++||.|....
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a~--- 283 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADAR--- 283 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCSC---
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCccc---
Confidence 35678999964322111 11 012368889999976542 3333333444332 233677899985221
Q ss_pred CHHHHHHHHHHhCCcEEEecCCCCCCHH
Q psy8722 139 MQEDAEKYAQSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (223)
.-.+.......+.|+.+++ +|++++
T Consensus 284 -~G~~l~~~~~~~~pi~~i~--~Ge~v~ 308 (328)
T 3e70_C 284 -GGAALSISYVIDAPILFVG--VGQGYD 308 (328)
T ss_dssp -CHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred -hhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence 2335566777888887776 455553
No 387
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.96 E-value=0.0042 Score=46.51 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-++++|++|+|||||++.+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999873
No 388
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.96 E-value=0.0052 Score=44.36 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=20.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+...|+++|.+|+||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998864
No 389
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.96 E-value=0.0041 Score=49.85 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.++++|++|+|||||++.+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999874
No 390
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.95 E-value=0.0037 Score=51.24 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.++++|+.|+|||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 589999999999999998875
No 391
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.94 E-value=0.0051 Score=43.90 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
+|+|.|.+||||||+.+.|.
T Consensus 9 ~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999875
No 392
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.94 E-value=0.0035 Score=45.09 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.++|.|++|+|||+|++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998863
No 393
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.93 E-value=0.0029 Score=45.70 Aligned_cols=22 Identities=27% Similarity=0.108 Sum_probs=15.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
...|+|.|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999986
No 394
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.93 E-value=0.0023 Score=51.75 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++++|+.|+|||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998754
No 395
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.92 E-value=0.0043 Score=44.88 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-.+|+|+.|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999863
No 396
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.91 E-value=0.0036 Score=53.22 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
-.++|+|++|||||||++.+.+-
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35999999999999999999753
No 397
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.88 E-value=0.0055 Score=47.28 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 398
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.88 E-value=0.0054 Score=47.01 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+.+.|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998863
No 399
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.88 E-value=0.0049 Score=44.67 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
.|+|+|++|+||||+.+.|.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 59999999999999998886
No 400
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.83 E-value=0.0051 Score=49.85 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.2
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~ 36 (223)
+.-.|+++|+.|+||||+++.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHH
Confidence 44578999999999999999875
No 401
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.80 E-value=0.0052 Score=49.60 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
+++++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998653
No 402
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.79 E-value=0.0058 Score=45.93 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.++|.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 403
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.79 E-value=0.0084 Score=45.04 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=17.3
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
-|+|+|+|||||+|....|.
T Consensus 31 iI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35678999999999998876
No 404
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.77 E-value=0.0062 Score=46.16 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=22.0
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
++..+...|+|+|++|+||||+.+.|..
T Consensus 11 ~~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 11 DDKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp ---CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456677899999999999999988763
No 405
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.77 E-value=0.0059 Score=47.75 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=21.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
...+.|+|.|++||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999886
No 406
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.76 E-value=0.0073 Score=44.44 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=22.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
-..+.|++.|..||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998864
No 407
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.76 E-value=0.0056 Score=46.95 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
-.|+++|++|+|||+|++.+..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3599999999999999999874
No 408
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.74 E-value=0.0053 Score=47.21 Aligned_cols=21 Identities=29% Similarity=0.170 Sum_probs=19.1
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
-+|+|+|++|+||||+.+.|.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999885
No 409
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.0046 Score=51.84 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
=.++|+|+.|+|||||++.+.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999998754
No 410
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.72 E-value=0.0058 Score=51.53 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~ 36 (223)
+.--|+|+|+.|+|||||++.|.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHH
Confidence 44578999999999999999875
No 411
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.72 E-value=0.007 Score=44.51 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
-.+++.|++|+|||+|++.+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998874
No 412
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.69 E-value=0.0091 Score=45.17 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.3
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+..-|+|.|++|+||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 556799999999999999999873
No 413
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.69 E-value=0.0078 Score=47.29 Aligned_cols=27 Identities=11% Similarity=0.022 Sum_probs=22.0
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
......-+++.|++|+|||+|.+.+..
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344556788889999999999999874
No 414
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.68 E-value=0.0056 Score=48.06 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++|+|++|+|||||++.+...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999999988743
No 415
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.67 E-value=0.0067 Score=45.82 Aligned_cols=22 Identities=23% Similarity=0.233 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999853
No 416
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.65 E-value=0.0081 Score=44.65 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=20.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+...|+++|++|+||||+.+.|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998863
No 417
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.64 E-value=0.0043 Score=49.46 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++|+|+.|||||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4678999999999999999854
No 418
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.64 E-value=0.0069 Score=44.99 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 419
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.62 E-value=0.0071 Score=42.52 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=17.1
Q ss_pred EEEECCCCCcHHHHHHHHh
Q psy8722 18 VVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~ 36 (223)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4689999999999999975
No 420
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.57 E-value=0.018 Score=42.30 Aligned_cols=85 Identities=13% Similarity=0.049 Sum_probs=56.2
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCccccccCCHH
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML--GNDICLTIAGNKIDLEKQRTVMQE 141 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~ 141 (223)
+.+.|+|+|+.. .......+..+|.+|+++..+... ..+..++..+.... .++.++.+|+|+.|.... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence 567889999865 333445667799999999887654 66666666666543 345678999999985322 224
Q ss_pred HHHHHHHHhCCcEE
Q psy8722 142 DAEKYAQSVGAVHF 155 (223)
Q Consensus 142 ~~~~~~~~~~~~~~ 155 (223)
+..+....++.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 45555666665544
No 421
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.54 E-value=0.0076 Score=42.02 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=20.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
...|++.|++|+|||++.+.+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999988754
No 422
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.54 E-value=0.01 Score=50.76 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~ 39 (223)
=.++++|+.|+|||||++.+.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999988643
No 423
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.49 E-value=0.0079 Score=50.64 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.7
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
=.++|+|+.|+|||||++.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHh
Confidence 357899999999999999986
No 424
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.49 E-value=0.01 Score=46.60 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=20.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
.....++|.|++|+|||++++.+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 445689999999999999998665
No 425
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.47 E-value=0.0074 Score=44.88 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
-.+++.||+|+|||+++.++..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999988864
No 426
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.46 E-value=0.0082 Score=47.13 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
..|+++|++|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 427
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.44 E-value=0.0084 Score=48.92 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.|+++|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999999874
No 428
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.44 E-value=0.0082 Score=50.01 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
+++++|++|+|||||++.+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7899999999999999998854
No 429
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.43 E-value=0.011 Score=50.69 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=21.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~ 39 (223)
.+.=-++++|+.|+|||||++.+.+..
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 334468999999999999999988643
No 430
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.40 E-value=0.0094 Score=44.55 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
.++|.|++|+|||+|++.+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999886
No 431
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.011 Score=51.25 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
.++++|+.|+|||||++.+.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999999987543
No 432
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.37 E-value=0.0099 Score=43.84 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.+++.|++|+|||+|++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998864
No 433
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.36 E-value=0.0099 Score=46.18 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.+++.|++|+|||+|++.+..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 44699999999999999999874
No 434
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.32 E-value=0.01 Score=46.42 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.|++.|++|+|||+|++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 435
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.32 E-value=0.0089 Score=51.66 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 7899999999999999988753
No 436
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.32 E-value=0.011 Score=45.20 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=20.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
..-.|++.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999874
No 437
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.23 E-value=0.013 Score=50.56 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999988753
No 438
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.23 E-value=0.013 Score=44.33 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=19.7
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~ 36 (223)
..+++.|+|++||||||+...|.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHH
Confidence 46899999999999999998875
No 439
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.23 E-value=0.014 Score=50.63 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~ 39 (223)
=.++++|+.|+|||||++.+.+..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 368999999999999999987543
No 440
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.19 E-value=0.011 Score=46.62 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.|++.|++|+|||+|++.+..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHH
Confidence 34699999999999999999874
No 441
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.18 E-value=0.012 Score=47.90 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=18.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
.+ .+|+|+.|+|||||++.+.
T Consensus 24 g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EE-EEEECCTTSSHHHHHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHH
Confidence 45 4589999999999999976
No 442
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.13 E-value=0.018 Score=44.48 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
...-.+++.|++|+|||+|++.+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3456899999999999999999874
No 443
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.10 E-value=0.012 Score=46.67 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
-.+++.|++|+|||+|++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999998874
No 444
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.10 E-value=0.011 Score=45.88 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999998874
No 445
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.04 E-value=0.019 Score=45.08 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.+++.|++|+|||++++.+..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHH
Confidence 34799999999999999998874
No 446
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.01 E-value=0.016 Score=42.65 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.|+|.|++|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 447
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.99 E-value=0.013 Score=43.34 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
..|+|+|++|+|||+|...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998743
No 448
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.97 E-value=0.017 Score=49.39 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
.++|+|+.|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999987543
No 449
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.96 E-value=0.014 Score=48.32 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=20.4
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
...-|+++|++|+||||+.+.|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999864
No 450
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.96 E-value=0.0087 Score=51.69 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.++++|+.|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 789999999999999987764
No 451
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.96 E-value=0.0093 Score=51.68 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988753
No 452
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.96 E-value=0.02 Score=49.03 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
.++|+|+.|+|||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998643
No 453
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.96 E-value=0.019 Score=49.78 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
.++|+|+.|+|||||++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998643
No 454
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.93 E-value=0.014 Score=45.95 Aligned_cols=85 Identities=18% Similarity=0.033 Sum_probs=47.0
Q ss_pred EEEEEEeCCCccccccc-c---ccccc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 64 LNLAIWDTAGQERFHAL-G---PIYYR--MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~-~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
+.+.|+||+|....... . ...+. ..+..++|+|.... ...+..+...+.. -+ ..-+|.||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCcccc--
Confidence 46788899996543221 1 11222 35778899987643 2333333332221 11 23466799996432
Q ss_pred CCHHHHHHHHHHhCCcEEEec
Q psy8722 138 VMQEDAEKYAQSVGAVHFHTS 158 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~S 158 (223)
...+...+...+.|+..+.
T Consensus 255 --~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEEC
T ss_pred --hhHHHHHHHHHCcCEEEEE
Confidence 2355667777888765554
No 455
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.93 E-value=0.01 Score=51.45 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 7899999999999999988743
No 456
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.91 E-value=0.014 Score=47.14 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.++|.|++|+|||+|++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999874
No 457
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.90 E-value=0.015 Score=45.52 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999874
No 458
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.89 E-value=0.017 Score=46.77 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998743
No 459
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.88 E-value=0.019 Score=45.71 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.0
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
..|+|+|++|+|||||...|.
T Consensus 6 ~~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999998876
No 460
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.87 E-value=0.015 Score=43.92 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=17.7
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
-++++|++|+|||||+..+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999987775
No 461
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.86 E-value=0.013 Score=47.01 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998875
No 462
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.84 E-value=0.012 Score=51.00 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.++++|+.|+|||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 789999999999999988764
No 463
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.76 E-value=0.018 Score=45.65 Aligned_cols=86 Identities=19% Similarity=0.100 Sum_probs=47.8
Q ss_pred EEEEEEeCCCcccccccc-------cc-----ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q psy8722 64 LNLAIWDTAGQERFHALG-------PI-----YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKID 131 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~-------~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (223)
+.+.++|+||........ .. .-..++.+++|+|.... .+.+.. ...+.... + ..-+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~~--~-i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEAV--N-VTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHHS--C-CCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhcC--C-CCEEEEeCCC
Confidence 357888999953221110 00 11247889999998733 222222 12233221 2 3346679999
Q ss_pred ccccccCCHHHHHHHHHHhCCcEEEecC
Q psy8722 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 132 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
.... .-.+..+....+.|+.++..
T Consensus 261 ~~~~----gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTAK----GGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCSC----TTHHHHHHHHHCCCEEEEEC
T ss_pred Cccc----hHHHHHHHHHHCCCEEEEeC
Confidence 5322 22366778888988877654
No 464
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.75 E-value=0.017 Score=46.19 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
++++.|++|+||||+++.+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998743
No 465
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.73 E-value=0.019 Score=45.71 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.0
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+.-.|++.|++|+|||+|++.+..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999999864
No 466
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.72 E-value=0.018 Score=46.24 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.1
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
.-|+|+|++|||||||...|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La 28 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVA 28 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHH
Confidence 468999999999999999886
No 467
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.71 E-value=0.023 Score=49.35 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhhCC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~~ 39 (223)
++|+|+.|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999988543
No 468
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.71 E-value=0.019 Score=45.71 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=21.3
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
+.-.|++.|++|+|||+|++.+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3457999999999999999998753
No 469
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.64 E-value=0.019 Score=45.97 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-|+|+|++|+|||+|...|..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998863
No 470
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.63 E-value=0.022 Score=42.18 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=16.8
Q ss_pred EEEECCCCCcHHHHHHHHh
Q psy8722 18 VVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~ 36 (223)
.+|+|+.|+||||++..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4688999999999999875
No 471
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.63 E-value=0.021 Score=45.21 Aligned_cols=23 Identities=17% Similarity=0.275 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 472
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.62 E-value=0.018 Score=46.51 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
--+.|+|++|+|||||++.+...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999853
No 473
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.62 E-value=0.0086 Score=47.05 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=17.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+.+-|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998863
No 474
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.60 E-value=0.019 Score=47.56 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.--|++.||||+|||+|++++.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999874
No 475
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.60 E-value=0.027 Score=45.46 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=19.7
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~ 36 (223)
...+|+++|++|+||||+.+.|.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 34689999999999999998764
No 476
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.58 E-value=0.021 Score=45.31 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-|+|+||+|+|||+|...|..
T Consensus 5 ~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 578999999999999999864
No 477
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.53 E-value=0.015 Score=44.86 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=20.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+...|+|.|..|+||||+++.|..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999988863
No 478
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.46 E-value=0.022 Score=42.38 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
+.|++.|++|+||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988763
No 479
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.45 E-value=0.0099 Score=45.78 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.|++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999999874
No 480
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.42 E-value=0.023 Score=47.26 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=21.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+.--|++.||||+|||+|++++.+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3445799999999999999999874
No 481
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.41 E-value=0.02 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.++|.|++|+|||+|++.+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 44799999999999999998874
No 482
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.41 E-value=0.022 Score=45.45 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.+++.|++|+|||++++.+..
T Consensus 60 ~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998864
No 483
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.41 E-value=0.022 Score=45.91 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
-.++|.|++|+|||+|++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999873
No 484
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.41 E-value=0.02 Score=48.11 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=19.1
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
-+++++|++|+|||++++.+.
T Consensus 202 ~~~LL~G~pG~GKT~la~~la 222 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLA 222 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHH
Confidence 378999999999999999886
No 485
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.40 E-value=0.028 Score=40.55 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=26.3
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q psy8722 152 AVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAK 187 (223)
Q Consensus 152 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~ 187 (223)
+|.+.+-...|.|+..+.+........+..-+....
T Consensus 128 iP~i~iPv~~GRn~a~iiE~Aa~n~~lk~~G~~~a~ 163 (181)
T 3tqf_A 128 VPKILFPIHPGRNLPLLIETLVRNHRLKMEGYDSSH 163 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEeccCCCCcHHHHHHHHHHHHHHHHhCCcHHH
Confidence 467778888899999988888776666655554444
No 486
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.40 E-value=0.024 Score=45.03 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++|.|++|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 6889999999999999998743
No 487
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.36 E-value=0.027 Score=42.71 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
..|++.|..|+||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999999873
No 488
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.35 E-value=0.032 Score=42.02 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=21.5
Q ss_pred CCCCCCCeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 7 DRNSSSTYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 7 ~~~~~~~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
+......+..-|++.|..|+||||+++.|.
T Consensus 13 ~~~~~~~~~~~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 13 EAQTQGPGSMFITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp ------CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 334444567789999999999999999886
No 489
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.33 E-value=0.025 Score=41.12 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~ 38 (223)
|+|+|.+++|||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999844
No 490
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.33 E-value=0.029 Score=51.25 Aligned_cols=24 Identities=13% Similarity=0.272 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKF 40 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~ 40 (223)
.++|+|+.|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 579999999999999999986443
No 491
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.33 E-value=0.028 Score=46.67 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=21.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+.-.|++.||||+|||+|++++.+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHH
Confidence 3455799999999999999999874
No 492
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.31 E-value=0.22 Score=36.80 Aligned_cols=85 Identities=13% Similarity=0.021 Sum_probs=55.9
Q ss_pred EEEEEEeCCCc-cccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHH
Q psy8722 64 LNLAIWDTAGQ-ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQED 142 (223)
Q Consensus 64 ~~~~i~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 142 (223)
+.+.++|+|+. .. ......+..+|.+|+++..+ ..+...+...+..+.... +.++.+|+|+.|.... ....+
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE 140 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence 56788899986 32 22344567899999999876 456677777777666633 4568899999985430 12345
Q ss_pred HHHHHHHhCCcEE
Q psy8722 143 AEKYAQSVGAVHF 155 (223)
Q Consensus 143 ~~~~~~~~~~~~~ 155 (223)
..+....++.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 5555666776554
No 493
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.30 E-value=0.025 Score=45.10 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
-.|++.|++|+|||+|++.+..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4699999999999999999863
No 494
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.29 E-value=0.026 Score=43.32 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
..|++.|++|+|||++++.+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 57999999999999999998754
No 495
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.29 E-value=0.022 Score=48.55 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=17.6
Q ss_pred EEEEECCCCCcHHHHHHHH
Q psy8722 17 KVVLLGEGCVGKTSVVLRY 35 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l 35 (223)
-++|+|++|+|||||++.|
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5889999999999999995
No 496
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.28 E-value=0.026 Score=48.39 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.++++|++|+|||||++.+..
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 33689999999999999998863
No 497
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.27 E-value=0.024 Score=46.07 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
...|++.|++|+|||++.+.+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
No 498
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.26 E-value=0.035 Score=43.92 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.8
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
.-|+|+||+|+|||+|...|.
T Consensus 11 ~~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHH
Confidence 357899999999999999986
No 499
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.25 E-value=0.017 Score=52.72 Aligned_cols=22 Identities=14% Similarity=0.451 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|+.|+|||||++.+.+-
T Consensus 701 ivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998754
No 500
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.25 E-value=0.028 Score=45.39 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=20.9
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
..-.|+|.|++|+|||+|++.+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999874
Done!