RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8722
(223 letters)
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 256 bits (656), Expect = 4e-88
Identities = 134/168 (79%), Positives = 152/168 (90%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
S YSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTL ASFL KKLNI GKR+NLAIWD
Sbjct: 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKI 130
TAGQERFHALGPIYYR SNGA+LVYDITDEDSF+KVKNWVKEL+KMLGN+ICL I GNKI
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121
Query: 131 DLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
DLEK+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E
Sbjct: 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 244 bits (626), Expect = 4e-83
Identities = 81/180 (45%), Positives = 113/180 (62%)
Query: 3 ANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGK 62
++ L S+ KV LLG+ VGK+S+V R+V+D F+ T+ ASF+ K + +
Sbjct: 11 SSGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNE 70
Query: 63 RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC 122
IWDTAGQERFH+L P+YYR S AV+VYDIT +DSF +K WVKELK+ +I
Sbjct: 71 LHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIV 130
Query: 123 LTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+ IAGNK DL R V +DA++YA+S+GA+ TSAK IEE+F +S+++
Sbjct: 131 MAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPH 190
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 244 bits (625), Expect = 1e-82
Identities = 66/220 (30%), Positives = 117/220 (53%), Gaps = 12/220 (5%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
M+ + FK+V LGE VGKTS++ R++ D F+ + T+ FL+K + +
Sbjct: 4 MSTG-GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 62
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDI 121
+ + L +WDTAG ERF +L P Y R S AV+VYDIT+ +SF++ W+ +++ G+D+
Sbjct: 63 RTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 122
Query: 122 CLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
+ + GNK DL +R V E+ E+ A+ + + TSAK ++++F ++ +
Sbjct: 123 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 182
Query: 182 EFDLAKASELSRRGSMRRNVVVVEDEDLPTSSSTKSGCCL 221
D + R +++ ++ E ++ GC L
Sbjct: 183 TQDRS-----------REDMIDIKLEKPQEQPVSEGGCLL 211
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 242 bits (619), Expect = 2e-82
Identities = 77/168 (45%), Positives = 107/168 (63%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
S+ KV LLG+ VGK+S++ R+VED F+ T+ ASF+ K + + IWD
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKI 130
TAG ERF AL P+YYR S A++VYDIT E++F +KNWV+EL++ I + IAGNK
Sbjct: 62 TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121
Query: 131 DLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
DL R VM+ DA+ YA S+ A+ TSAK I E+F+E+S+R+
Sbjct: 122 DLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 239 bits (613), Expect = 2e-81
Identities = 70/178 (39%), Positives = 113/178 (63%)
Query: 5 SLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRL 64
S+ + + + K+VLLG+ GK+S+VLR+V+D+F E +T+ A+F ++ L + +
Sbjct: 2 SMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATV 61
Query: 65 NLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLT 124
IWDTAGQER+H+L P+YYR + A++V+D+T++ SFE+ K WV+EL+ ++ +
Sbjct: 62 KFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMA 121
Query: 125 IAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+AGNK DL R V EDA+ YAQ G TSAK ++E+F E+++R+
Sbjct: 122 LAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPT 179
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 238 bits (609), Expect = 8e-81
Identities = 69/168 (41%), Positives = 114/168 (67%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
+ FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWD
Sbjct: 2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKI 130
TAGQER+H+L P+YYR + A++VYDIT+E+SF + KNWVKEL++ +I + ++GNK
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 131 DLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
DL +R V ++A+ YA + TSAK + + E+F+ +++++ +
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 221 bits (565), Expect = 3e-74
Identities = 55/166 (33%), Positives = 95/166 (57%), Gaps = 1/166 (0%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+ K+V++G G VGK+S++ RY + F + + T+ FL +++ + + + L +WDTAG
Sbjct: 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 63
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QE F A+ YYR + VLV+ TD +SFE + +W +++ DI + NKIDL
Sbjct: 64 QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE-VGDIPTALVQNKIDLL 122
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+ E+AE A+ + + TS K + + E+F L+++ L+K
Sbjct: 123 DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 220 bits (564), Expect = 6e-74
Identities = 61/175 (34%), Positives = 104/175 (59%), Gaps = 2/175 (1%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
M++ + FK+V LGE VGKTS++ R++ D F+ + T+ FL+K + +
Sbjct: 3 MSSG--DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 60
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDI 121
+ + L +WDTAGQERF +L P Y R S AV+VYDIT+ +SF + W+ +++ G+D+
Sbjct: 61 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV 120
Query: 122 CLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
+ + GNK DL +R V E+ E+ A+ + + TSAK ++++F ++ +
Sbjct: 121 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 215 bits (549), Expect = 4e-71
Identities = 45/170 (26%), Positives = 91/170 (53%), Gaps = 1/170 (0%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTL-QASFLNKKLNIAGKRLNLAIWDTA 72
++K+ L+G+G VGKT+ + R ++ +F + + T+ + L+ G + +WDTA
Sbjct: 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTA 69
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQE+ L +YY ++GA+L +D+T + + + WVKE + ++GN+ + + NKID+
Sbjct: 70 GQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDI 129
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+ ++ + ++ + + +F SAK FL L++ +
Sbjct: 130 KNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDL 179
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 212 bits (542), Expect = 5e-70
Identities = 64/224 (28%), Positives = 116/224 (51%), Gaps = 6/224 (2%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
M++ D FK+VL+G+ VGK++++ R+ +++FN +T+ F + L I G
Sbjct: 1 MSSE-DYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEG 59
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDI 121
KR+ IWDTAGQER+ A+ YYR + GA++VYDI+ S+E +W+ EL++ +++
Sbjct: 60 KRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNV 119
Query: 122 CLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
+ + GNK DL R V E+++ +AQ + TSA + +++ F EL + +K
Sbjct: 120 AVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVS 179
Query: 182 E-----FDLAKASELSRRGSMRRNVVVVEDEDLPTSSSTKSGCC 220
+ D + + + + + + + CC
Sbjct: 180 KHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 211 bits (539), Expect = 8e-70
Identities = 65/207 (31%), Positives = 117/207 (56%), Gaps = 8/207 (3%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++L+G VGK+ ++LR+ +D + +I+T+ F K + + GK + L IWDTAG
Sbjct: 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 66
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR S+G ++VYD+TD++SF VK W++E+ + + + + GNK DL+
Sbjct: 67 QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSR 193
+R V + A+++A + TSA + +E+ FL +++++ E + + +
Sbjct: 127 DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQ----QNLNETT 182
Query: 194 RGSMRRNVVVVEDEDLPTSSSTKSGCC 220
+ + V ++ S + GCC
Sbjct: 183 QKKEDKGNVNLKG----QSLTNTGGCC 205
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 210 bits (536), Expect = 3e-69
Identities = 48/181 (26%), Positives = 96/181 (53%), Gaps = 5/181 (2%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
MA++ FK+VL+G+G GKT+ V R++ +F +K++ TL +
Sbjct: 4 MASAAQGEPQ--VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR 61
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDI 121
+ +WDTAGQE+F L YY + A++++D+T +++ V NW ++L ++ +I
Sbjct: 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENI 120
Query: 122 CLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
+ + GNK+D++ ++ + + + ++ SAK N E+ FL L+++++
Sbjct: 121 PIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN 178
Query: 182 E 182
Sbjct: 179 L 179
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 209 bits (534), Expect = 5e-69
Identities = 59/216 (27%), Positives = 107/216 (49%), Gaps = 15/216 (6%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
S KV++LG+ VGKTS++ +YV KF+ ++ T+ A FL K++ + + + + I
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKK----MLGNDICLT 124
WDTAGQERF +LG +YR ++ VLV+D+T ++F+ + +W E +
Sbjct: 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 125 IAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFD 184
+ GNKIDLE ++ + +F TSAK +E+ F +++ L++ E +
Sbjct: 122 VLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 181
Query: 185 LAKASELSRRGSMRRNVVVVEDEDLPTSSSTKSGCC 220
L + ++ + + ++ C
Sbjct: 182 LYNEFP---------EPIKLDKNE--RAKASAESCS 206
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 208 bits (531), Expect = 9e-69
Identities = 60/192 (31%), Positives = 101/192 (52%), Gaps = 11/192 (5%)
Query: 2 MANSLDRNSSST-----------YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQA 50
M +S + S+ + FKVVL+GE VGKT+++ R+ ++F+ TT+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGV 60
Query: 51 SFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWV 110
F + + + + IWDTAG ER+ A+ YYR + GA+LV+D+T ++ V+ W+
Sbjct: 61 EFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWL 120
Query: 111 KELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170
KEL I + + GNK DL + R V E+A +A++ G + TSA + +E F
Sbjct: 121 KELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE 180
Query: 171 ELSQRMLEKAQE 182
+ + + K +
Sbjct: 181 TVLKEIFAKVSK 192
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 207 bits (528), Expect = 2e-68
Identities = 63/188 (33%), Positives = 112/188 (59%), Gaps = 7/188 (3%)
Query: 2 MANSLDRNSSST-------YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLN 54
M +S + S+ Y FK +++G+ VGK+ ++L++ + +F H T+ F
Sbjct: 1 MGSSHHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA 60
Query: 55 KKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELK 114
+ +NI GK++ L IWDTAGQE F ++ YYR + GA+LVYDIT ++F + +W+++ +
Sbjct: 61 RMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDAR 120
Query: 115 KMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174
+ +++ + + GNK DLE +R V +E+ E +A+ G + TSAK +EE F+ ++
Sbjct: 121 QHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 180
Query: 175 RMLEKAQE 182
+ K Q+
Sbjct: 181 EIYRKIQQ 188
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 207 bits (528), Expect = 3e-68
Identities = 59/189 (31%), Positives = 100/189 (52%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FKVVL+G+ VGK++++ R+ ++FN + +T+ F + + + GK + IWDTAG
Sbjct: 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 63
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QER+ + YYR + GA+LVYDI ++E V+ W+KEL+ ++I + + GNK DL
Sbjct: 64 QERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSR 193
R V ++A +A+ TSA + +EE F + + + +A +
Sbjct: 124 HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDE 183
Query: 194 RGSMRRNVV 202
+
Sbjct: 184 SPGNNVVDI 192
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 206 bits (526), Expect = 4e-68
Identities = 64/175 (36%), Positives = 96/175 (54%), Gaps = 6/175 (3%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
+ + FKV+LLG+G VGK+S++ RYV +KF+ + T+ FLNK L + G + + IW
Sbjct: 2 AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 61
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKK----MLGNDICLTI 125
DTAGQERF +L +YR S+ +L + + D SF+ + NW KE I
Sbjct: 62 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 121
Query: 126 AGNKIDLEKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRMLEK 179
GNKID+ +R V E+A+ + + G + TSAK + F E +R+L
Sbjct: 122 LGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 205 bits (525), Expect = 5e-68
Identities = 56/165 (33%), Positives = 101/165 (61%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK +++G+ VGK+ ++ ++ E KF T+ F + + ++G+++ L IWDTAG
Sbjct: 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 73
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF A+ YYR + GA++VYDIT ++ + +W+ + + + + + + GNK DLE
Sbjct: 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
QR V E+A+++A+ G + SAK +E+ FLE ++++ +
Sbjct: 134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 205 bits (525), Expect = 5e-68
Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 4/170 (2%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGK-RLNLAIWDTA 72
K+V+LG+G GKTS+ + ++ F +++ T+ F +++ + G + L IWD
Sbjct: 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIG 64
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML---GNDICLTIAGNK 129
GQ + Y + G +LVYDIT+ SFE +++W +KK+ + + GNK
Sbjct: 65 GQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNK 124
Query: 130 IDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
IDLE RT+ E ++ Q G SAK + F +++ +L
Sbjct: 125 IDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 206 bits (526), Expect = 8e-68
Identities = 64/169 (37%), Positives = 109/169 (64%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+ FK+VL+G VGKT +V R+ + F T+ F+ K + I G+++ L IWDTAG
Sbjct: 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 84
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF ++ YYR +N +L YDIT E+SF + W++E+++ N + + GNKIDL
Sbjct: 85 QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
++R V Q+ AE+++++ + TSAK + +E++FL+L+ R++ +A++
Sbjct: 145 ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQ 193
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 205 bits (525), Expect = 9e-68
Identities = 56/169 (33%), Positives = 100/169 (59%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+ FK +++G GK+ ++ +++E+KF + T+ F ++ +N+ GK + L IWDTAG
Sbjct: 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAG 83
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF ++ YYR + GA+LVYDIT +++ + W+ + + + +I + + GNK DL+
Sbjct: 84 QERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+R V +A ++AQ + TSA +EE FL+ ++ +L K
Sbjct: 144 PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDS 192
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 205 bits (523), Expect = 1e-67
Identities = 67/189 (35%), Positives = 104/189 (55%), Gaps = 8/189 (4%)
Query: 2 MANSLDRNSSST--------YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFL 53
M +S + S+ Y FK++L+G VGKTS + RY +D F ++T+ F
Sbjct: 1 MGSSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK 60
Query: 54 NKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKEL 113
K + KR+ L IWDTAGQER+ + YYR + G +L+YDI +++SF V++W ++
Sbjct: 61 VKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI 120
Query: 114 KKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173
K ++ + + GNK DLE +R V ED + A +G F SAK N ++++F L
Sbjct: 121 KTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180
Query: 174 QRMLEKAQE 182
+ EK E
Sbjct: 181 DVICEKMNE 189
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 204 bits (521), Expect = 2e-67
Identities = 57/169 (33%), Positives = 101/169 (59%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+ FK +++G GK+ ++ +++E KF + T+ F +K +N+ GK + L IWDTAG
Sbjct: 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 68
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF ++ YYR + GA+LVYDIT +++ + NW+ + + + +I + + GNK DL+
Sbjct: 69 QERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
R V +A ++AQ + TSA +EE F++ ++++L K +
Sbjct: 129 ADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 177
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 204 bits (522), Expect = 2e-67
Identities = 59/169 (34%), Positives = 96/169 (56%)
Query: 7 DRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNL 66
R+ Y FKVVL+G+ VGK++++ R+ ++FN + +T+ F + + + GK +
Sbjct: 21 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA 80
Query: 67 AIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIA 126
IWDTAG ER+ A+ YYR + GA+LVYDI ++E V+ W+KEL+ ++I + +
Sbjct: 81 QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 140
Query: 127 GNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175
GNK DL R V ++A +A+ G TSA + +E F +
Sbjct: 141 GNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTE 189
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 204 bits (522), Expect = 3e-67
Identities = 69/177 (38%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Query: 7 DRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNL 66
D + + FK+VL+G+ VGKT VV R+ F+E+ +T+ F K L I GKR+ L
Sbjct: 21 DPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKL 80
Query: 67 AIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIA 126
IWDTAGQERF + YYR +NGA+L YDIT SF V +W+++++K G++I +
Sbjct: 81 QIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLI 140
Query: 127 GNKIDLEKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRMLEKAQE 182
GNK DL + R V +A+ A+ + TSAK + +EE FL ++ ++ +
Sbjct: 141 GNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGG 197
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 204 bits (522), Expect = 3e-67
Identities = 59/166 (35%), Positives = 105/166 (63%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++L+G+ VGK+ ++LR+ +D + E +I+T+ F + + + GK + L IWDTAG
Sbjct: 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 91
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR ++G ++VYD+TD++SF VK W++E+ + ++ + GNK DL
Sbjct: 92 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
++ V A+++A S+G TSAK +E+ F+ ++ + ++
Sbjct: 152 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 197
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 203 bits (519), Expect = 4e-67
Identities = 66/180 (36%), Positives = 110/180 (61%), Gaps = 7/180 (3%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLN-LA 67
+S KV++LG+ VGKTS++ RYV DK+++++ T+ A FL K++ + G ++ +
Sbjct: 2 SSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQ 61
Query: 68 IWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKK----MLGNDICL 123
+WDTAGQERF +LG +YR ++ VLVYD+T+ SFE +K+W E
Sbjct: 62 VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPF 121
Query: 124 TIAGNKIDLEK-QRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRMLEKAQ 181
I GNKID E+ ++ V ++ A++ A+S+G + TSAK ++ F E+++ L++ Q
Sbjct: 122 VILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 181
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 203 bits (519), Expect = 7e-67
Identities = 61/177 (34%), Positives = 108/177 (61%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++L+G+ VGK+ ++LR+ +D + E +I+T+ F + + + GK + L IWDTAG
Sbjct: 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 74
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR ++G ++VYD+TD++SF VK W++E+ + ++ + GNK DL
Sbjct: 75 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASE 190
++ V A+++A S+G TSAK +E+ F+ ++ + ++ A +E
Sbjct: 135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAE 191
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 202 bits (517), Expect = 1e-66
Identities = 74/188 (39%), Positives = 109/188 (57%), Gaps = 6/188 (3%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
MA + D Y FK++L+G+ VGKT V+ R+ ED FN I+T+ F + + + G
Sbjct: 1 MAKTYD------YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDG 54
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDI 121
KR+ L IWDTAGQERF + YYR + G +LVYDIT+E SF+ ++NW++ +++ D+
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 122 CLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
I GNK D+ +R V +E EK A G TSAK N +E F L++ + K
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174
Query: 182 EFDLAKAS 189
+ A A+
Sbjct: 175 KNWKATAA 182
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 202 bits (516), Expect = 2e-66
Identities = 61/169 (36%), Positives = 98/169 (57%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++++G VGKTS + RY +D F ++T+ F K + KR+ L IWDTAG
Sbjct: 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAG 81
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QER+ + YYR + G +L+YDIT+E+SF V++W ++K ++ + + GNK D+E
Sbjct: 82 QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
++R V E + A+ +G F SAK N + + F L + +K +
Sbjct: 142 EERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 190
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 202 bits (515), Expect = 2e-66
Identities = 62/179 (34%), Positives = 101/179 (56%), Gaps = 6/179 (3%)
Query: 7 DRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNL 66
++ SS ++K+VL G+ VGK+S ++R +++F E TL F K L + G+R L
Sbjct: 20 AKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVL 79
Query: 67 AIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIA 126
+WDTAGQERF ++ Y+R ++G +L+YD+T E SF ++ WV ++ + + +
Sbjct: 80 QLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLV 139
Query: 127 GNKIDL------EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
GNK D+ E Q+ V EK A + GA+ TSAK I E L L++ + ++
Sbjct: 140 GNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 201 bits (514), Expect = 2e-66
Identities = 65/169 (38%), Positives = 110/169 (65%), Gaps = 1/169 (0%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+ FK++++G+ VGK+S++LR+ ++ F+ +ITT+ F + + I G+++ L IWDTAG
Sbjct: 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAG 67
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR ++G ++VYD+T +SF VK W+ E+ + +D+C + GNK D
Sbjct: 68 QERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ-NCDDVCRILVGNKNDDP 126
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+++ V EDA K+A +G F TSAK N +EEMF +++ +L ++
Sbjct: 127 ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKD 175
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 202 bits (515), Expect = 3e-66
Identities = 65/177 (36%), Positives = 105/177 (59%), Gaps = 2/177 (1%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+ K++++GE VGK+S++LR+ +D F+ + T+ F K +++ G + LAIWDTAG
Sbjct: 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 73
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDL 132
QERF L P YYR + G +LVYD+T D+F K+ NW+ EL+ NDI + GNKID
Sbjct: 74 QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 133
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKAS 189
E R V + + K+A+ + SAK G++ F EL +++++ ++ +
Sbjct: 134 EN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQN 189
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 202 bits (515), Expect = 3e-66
Identities = 62/179 (34%), Positives = 98/179 (54%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++++G VGKTS + RY +D F ++T+ F K + KR+ L IWDTAG
Sbjct: 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 66
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
ER+ + YYR + G +L+YDIT+E+SF V++W ++K ++ + + GNK D+E
Sbjct: 67 LERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 126
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELS 192
+R V E + A +G F SAK N +++ F L + EK E ++
Sbjct: 127 DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVT 185
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 201 bits (513), Expect = 5e-66
Identities = 64/167 (38%), Positives = 105/167 (62%), Gaps = 1/167 (0%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+ +V+++G VGKTS++ R+ +D F E +T+ F K + + GK++ L IWDTAG
Sbjct: 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAG 84
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF+++ YYR + G +LVYDIT +++F+ + W+K + K D L + GNK+D E
Sbjct: 85 QERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144
Query: 134 KQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRMLEK 179
R + ++ EK+AQ + + F SAK N ++E+FL+L +L+K
Sbjct: 145 TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 199 bits (509), Expect = 1e-65
Identities = 67/169 (39%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
K++L+G+ VGK+ +++R+VEDKFN ITT+ F K ++I GK++ L IWDTAG
Sbjct: 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR + G +LVYDITDE +F +K W K + + ++ L + GNK D+E
Sbjct: 62 QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
R V + E A+ +G +SAK + + E+F L++ + EK
Sbjct: 122 T-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 200 bits (511), Expect = 2e-65
Identities = 68/190 (35%), Positives = 107/190 (56%), Gaps = 1/190 (0%)
Query: 1 MMANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA 60
++ S S K++L+G+ VGK+ +++R+VEDKFN ITT+ F K ++I
Sbjct: 6 TVSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN 65
Query: 61 GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND 120
GK++ L +WDTAGQERF + YYR + G +LVYD+TDE +F +K W K + + ++
Sbjct: 66 GKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE 125
Query: 121 ICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180
L + GNK D+E R V + E A+ +G +SAK + + E+F L++ + EK
Sbjct: 126 AQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184
Query: 181 QEFDLAKASE 190
L
Sbjct: 185 DSNKLVGVGN 194
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 198 bits (506), Expect = 4e-65
Identities = 58/170 (34%), Positives = 105/170 (61%), Gaps = 1/170 (0%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
+FKV+L+G+ VGKT +++R+ + F I+T+ F NK L++ G ++ L +WDTA
Sbjct: 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTA 68
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQERF ++ YYR ++ +L+YD+T++ SF+ ++ W+ E+ + +D+ L + GNK+D
Sbjct: 69 GQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDS 128
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+R V +ED EK A+ G TSAK ++ F +++ + ++ +
Sbjct: 129 AHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMK 178
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 196 bits (500), Expect = 2e-64
Identities = 72/168 (42%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
S K+VLLGE VGK+S+VLR+V + F E T+ A+FL +++ I + IWDTAGQ
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKID--- 131
ERF +L P YYR + A++VYD+T SF K ++WVKEL + DI + + GNKID
Sbjct: 63 ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122
Query: 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+R V +E+ EK A+ G + F TSAK + ++FL + +++ K
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 195 bits (499), Expect = 4e-64
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 2/180 (1%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
+ S K+ +LG VGK+S+ +++VE +F + + T++ +F K + + G+ +L + D
Sbjct: 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVD 60
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNK 129
TAGQ+ + Y NG +LVY +T SFE +K +L M+G I + + GNK
Sbjct: 61 TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNK 120
Query: 130 IDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKAS 189
DL +R + E+ + A+S A +SAK N+ ++F + + K+S
Sbjct: 121 KDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQGKSS 180
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 194 bits (495), Expect = 4e-63
Identities = 42/188 (22%), Positives = 83/188 (44%), Gaps = 9/188 (4%)
Query: 4 NSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVE--DKFNEKHITTLQASFLNKKLNIAG 61
+ ++T KV ++GE VGK++++ + KF + + T + + I
Sbjct: 9 EVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPD 68
Query: 62 KRLNLAIW--DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN 119
+++ ++ DTAG + + Y+ A+LV+D++ +SFE K W + LK +
Sbjct: 69 TTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPD 128
Query: 120 ---DICLTIAGNKIDLEKQR-TVMQEDAEKYAQSVGAVHFHTSAK-MNRGIEEMFLELSQ 174
+ + NK DL QR V + A+ +A + F SA + + FL ++
Sbjct: 129 RERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIAT 188
Query: 175 RMLEKAQE 182
++
Sbjct: 189 TFYRNYED 196
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 193 bits (492), Expect = 6e-63
Identities = 58/170 (34%), Positives = 97/170 (57%), Gaps = 5/170 (2%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
FK++++G+ VGKT + R+ +F ++ T+ F + ++I G+R+ + +WDTAG
Sbjct: 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 78
Query: 74 QERFH-ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKK-MLGNDICLTIAGNKID 131
QERF ++ YYR + V VYD+T+ SF + W++E K+ +L NDI + GNK D
Sbjct: 79 QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 138
Query: 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSAK---MNRGIEEMFLELSQRMLE 178
L V + A+K+A + F TSAK N +E +F+ L+ ++
Sbjct: 139 LRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 192 bits (490), Expect = 1e-62
Identities = 63/180 (35%), Positives = 102/180 (56%), Gaps = 11/180 (6%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNI----------AGKR 63
Y K + LG+ VGKTSV+ +Y + KFN K ITT+ F K++ G+R
Sbjct: 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQR 69
Query: 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN-DIC 122
++L +WDTAG ERF +L ++R + G +L++D+T+E SF V+NW+ +L+ + +
Sbjct: 70 IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD 129
Query: 123 LTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+ + GNK DLE QR V +E+A + A+ G +F TSA I L ++++ +
Sbjct: 130 IVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMER 189
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 192 bits (489), Expect = 3e-62
Identities = 58/221 (26%), Positives = 114/221 (51%), Gaps = 17/221 (7%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
MA + + +S KV+++G G VGK+++ L+++ D+F E + T S+ KK+ + G
Sbjct: 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDG 59
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND- 120
+ + + I DTAGQE + A+ Y+R G + V+ IT+ +SF ++ +++ ++ ++
Sbjct: 60 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 119
Query: 121 ICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180
+ + GNK DLE +R V E+A+ A+ + TSAK ++++F +L R +
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM-REIRAR 178
Query: 181 QEFDLAKASELSRRGSMRRNVVVVEDEDLPTSSSTKSGCCL 221
+ D + + +R S + + CC+
Sbjct: 179 KMEDSKEKNGKKKRKS--------------LAKRIRERCCI 205
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 192 bits (490), Expect = 3e-62
Identities = 61/203 (30%), Positives = 107/203 (52%), Gaps = 22/203 (10%)
Query: 2 MANSLDRNSSST-----------YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQA 50
M +S + S+ Y K++ LG+ VGKT+ + RY ++KFN K ITT+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGI 60
Query: 51 SFLNKKLNIAGK----------RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDE 100
F K++ + +++L +WDTAGQERF +L ++R + G +L++D+T +
Sbjct: 61 DFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQ 120
Query: 101 DSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSA 159
SF V+NW+ +L+ + + + GNK DL QR V + A + A G +F TSA
Sbjct: 121 QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA 180
Query: 160 KMNRGIEEMFLELSQRMLEKAQE 182
+ +E+ L ++++ ++
Sbjct: 181 ATGQNVEKAVETLLDLIMKRMEQ 203
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 189 bits (482), Expect = 3e-61
Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 40/206 (19%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGK-------- 62
S+K VLLGE VGK+S+VLR +D F+E TT+ ASF +N+
Sbjct: 3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62
Query: 63 -----------------------------RLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93
+ IWDTAGQER+ ++ P+YYR + A++
Sbjct: 63 EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122
Query: 94 VYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV 153
V+DI++ ++ ++ K WV +LK ++ + + NKID K V + +KYAQ +
Sbjct: 123 VFDISNSNTLDRAKTWVNQLKI--SSNYIIILVANKIDKNK-FQVDILEVQKYAQDNNLL 179
Query: 154 HFHTSAKMNRGIEEMFLELSQRMLEK 179
TSAK I+ +F L++ + +
Sbjct: 180 FIQTSAKTGTNIKNIFYMLAEEIYKN 205
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 187 bits (477), Expect = 1e-60
Identities = 51/182 (28%), Positives = 103/182 (56%), Gaps = 2/182 (1%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
++ + +S KV+++G G VGK+++ L+++ D+F E + T S+ KK+ + G
Sbjct: 5 ISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDG 63
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND- 120
+ + + I DTAGQE + A+ Y+R G + V+ IT+ +SF ++ +++ ++ ++
Sbjct: 64 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 123
Query: 121 ICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180
+ + GNK DLE +R V E+A+ A+ + TSAK ++++F +L + + +
Sbjct: 124 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 183
Query: 181 QE 182
E
Sbjct: 184 ME 185
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 187 bits (478), Expect = 1e-60
Identities = 52/177 (29%), Positives = 96/177 (54%), Gaps = 2/177 (1%)
Query: 4 NSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKR 63
N + KVV+LG CVGKTS+ ++VE +F+E + T++ ++ +K + +
Sbjct: 13 NLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDE 71
Query: 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-IC 122
+L + DTAGQ+ + L + +G VLVY +T SF+ +++ ++L + G +
Sbjct: 72 FHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP 131
Query: 123 LTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+ + GNK DL +R V + +K A+S GA +SA+ N+ + +F ++ Q +
Sbjct: 132 VVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 186 bits (476), Expect = 2e-60
Identities = 51/175 (29%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
+ + + K+V++G G VGK+++ +++++ F + T++ S+ K ++ G L I
Sbjct: 3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDI 61
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAG 127
DTAGQE F A+ Y R +G +LV+ I D SF +V ++ ++ D + + G
Sbjct: 62 LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 121
Query: 128 NKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
NK DLE QR V + +A + S +F SAK+ ++E F +L + + + ++
Sbjct: 122 NKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 176
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 181 bits (463), Expect = 8e-59
Identities = 49/165 (29%), Positives = 96/165 (58%), Gaps = 2/165 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
KV+++G G VGK+++ L+++ D+F E + T S+ KK+ + G+ + + I DTAGQE
Sbjct: 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQE 63
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEK 134
+ A+ Y+R G + V+ IT+ +SF ++ +++ ++ ++ + + GNK DLE
Sbjct: 64 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+R V E+A+ A + TSAK ++++F +L + + +
Sbjct: 124 KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 181 bits (462), Expect = 1e-58
Identities = 50/169 (29%), Positives = 89/169 (52%), Gaps = 3/169 (1%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
+ ++V + G G VGK+S+VLR+V+ F E +I T++ ++ + ++ L I DT
Sbjct: 1 SNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTT 59
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN--DICLTIAGNKI 130
G +F A+ + + +LVY IT S E++K +++ ++ G+ I + + GNK
Sbjct: 60 GSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKC 119
Query: 131 DLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
D R V +AE A++ TSAK+N ++E+F EL +
Sbjct: 120 DESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 168
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 181 bits (462), Expect = 1e-58
Identities = 50/166 (30%), Positives = 93/166 (56%), Gaps = 3/166 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+KVV+LG G VGK+++ +++V F EK+ T++ + K++ + L I DTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTE 62
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEK 134
+F ++ +Y + G +LVY + ++ SF+ +K ++ ++ + + + + GNK+DLE
Sbjct: 63 QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180
+R V + A+ G TSAK ++E+F E+ R + A
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV-RQMNYA 167
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 181 bits (461), Expect = 3e-58
Identities = 49/180 (27%), Positives = 98/180 (54%), Gaps = 4/180 (2%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
MA S S + ++K+V++G+G VGK+++ +++ + F + + T++ S+ K I
Sbjct: 6 MATS-AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDN 63
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND- 120
+ L + DTAGQE F A+ Y R +G ++VY +TD+ SFE V + + + ++ +
Sbjct: 64 QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES 123
Query: 121 ICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNR-GIEEMFLELSQRMLEK 179
+ + NK+DL R V ++ ++ A + TSAK +++ F +L + + ++
Sbjct: 124 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 178 bits (454), Expect = 2e-57
Identities = 52/164 (31%), Positives = 97/164 (59%), Gaps = 3/164 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V++G G VGK+++ ++ +++ F ++ T++ S+ K++ I G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEK 134
+ A+ Y R G + V+ I + SFE + + +++K++ +D + + + GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA- 121
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
RTV A+ A+S G + TSAK +G+E+ F L + + +
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 178 bits (454), Expect = 4e-57
Identities = 49/182 (26%), Positives = 103/182 (56%), Gaps = 3/182 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V++G VGK+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEK 134
+ A+ Y R G + V+ I + SFE + ++ +++K++ ++ + + + GNK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP- 122
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRR 194
RTV + A+ A+S G TSAK +G+++ F L + + + ++ + +
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKS 182
Query: 195 GS 196
+
Sbjct: 183 KT 184
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 177 bits (452), Expect = 4e-57
Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FKV+L+GE VGK+++ + + + H +++ + + + L ++D Q
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 76 RFHALGP-IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLE 133
+ + ++V+ +TD SF KV + L+ + + + + GNK DL
Sbjct: 63 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+ R V E+ A ++ H TSA ++ E+F +++ +
Sbjct: 123 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 178 bits (454), Expect = 5e-57
Identities = 57/214 (26%), Positives = 102/214 (47%), Gaps = 20/214 (9%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
+ ++VV+ G G VGK+S+VLR+V+ F + +I T++ ++ + ++ L I
Sbjct: 3 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQIT 61
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN--DICLTIAG 127
DT G +F A+ + + +LV+ +T + S E++ K + ++ G+ DI + + G
Sbjct: 62 DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121
Query: 128 NKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAK 187
NK D QR V +A+ AQ TSAKMN ++E+F EL + +++
Sbjct: 122 NKCDET-QREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRR----NMSL 176
Query: 188 ASELSRRGSMRRNVVVVEDEDLPTSSSTKSGCCL 221
+ R G +R + K C L
Sbjct: 177 NIDGKRSGKQKR------------TDRVKGKCTL 198
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 178 bits (454), Expect = 5e-57
Identities = 37/177 (20%), Positives = 77/177 (43%), Gaps = 2/177 (1%)
Query: 5 SLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRL 64
+L FKV+L+GE VGK+++ + + + H +++ + + +
Sbjct: 13 NLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEV 72
Query: 65 NLAIWDTAGQERFHALGP-IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-IC 122
L ++D Q + + ++V+ +TD SF KV + L+ + +
Sbjct: 73 TLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP 132
Query: 123 LTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+ + GNK DL + R V E+ A ++ H TSA ++ E+F +++ +
Sbjct: 133 VILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 177 bits (451), Expect = 1e-56
Identities = 54/180 (30%), Positives = 92/180 (51%), Gaps = 4/180 (2%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
N ++ + + K+ + G VGK+++V+R++ +F ++ TL++++ + I
Sbjct: 15 TENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDD 73
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND- 120
+ +++ I DTAGQE + R G VLVYDITD SFE+V L ++
Sbjct: 74 EVVSMEILDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN 132
Query: 121 ICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG-IEEMFLELSQRMLEK 179
+ L + GNK DL+ R V E+ EK A + + SA G I E+F EL + + +
Sbjct: 133 VTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 192
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 176 bits (449), Expect = 2e-56
Identities = 51/177 (28%), Positives = 99/177 (55%), Gaps = 3/177 (1%)
Query: 7 DRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNL 66
+ +K+V++G G VGK+++ ++ +++ F +++ T++ S+ K++ I G+ L
Sbjct: 13 NLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLL 71
Query: 67 AIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTI 125
I DTAGQE + A+ Y R G + V+ I + SF + + +++K++ +D + + +
Sbjct: 72 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVL 131
Query: 126 AGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
GNK DL RTV + A + A+S G TSAK +G+E+ F L + + + +
Sbjct: 132 VGNKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMK 187
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 174 bits (445), Expect = 4e-56
Identities = 49/163 (30%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V+LG G VGK+++ +++V+ F EK+ T++ S+ K++ + ++ L I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEK 134
+F A+ +Y + G LVY IT + +F +++ +++ ++ + + + + GNK DLE
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 135 QRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRM 176
+R V +E + A+ F +SAK + E+F +L +++
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 171 bits (435), Expect = 2e-54
Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 4/170 (2%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++VVLLG+ VGKTS+ + + + H + + + L + G+ L + DT E
Sbjct: 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVY-ERTLTVDGEDTTLVVVDTWEAE 63
Query: 76 RFH--ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDL 132
+ + + V+VY I D SFE +L++ D + + + GNK DL
Sbjct: 64 KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+ R V E+ A TSA + + E+F + +++ + ++
Sbjct: 124 ARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRD 173
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 170 bits (433), Expect = 3e-54
Identities = 37/165 (22%), Positives = 78/165 (47%), Gaps = 3/165 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+KV+LLG VGK+++ + + ++ ++ + + G+ +L ++D Q+
Sbjct: 3 YKVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQD 60
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEK 134
L M + V+VY +TD+ SFEK +L++ D + + + GNK DL +
Sbjct: 61 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
R V ++ A TSA ++ ++ +F + +++ +
Sbjct: 121 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 169 bits (430), Expect = 1e-53
Identities = 33/171 (19%), Positives = 72/171 (42%), Gaps = 11/171 (6%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
KV ++G GK+++V RY+ + ++ F K++ + G+ L I D G
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPP 78
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDL-- 132
+ + V V+ + DE SF+ V N+ L + + + G + +
Sbjct: 79 ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRMLEKAQE 182
R + A K + + ++ T A +E +F +++Q+++ ++
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRKK 184
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 168 bits (428), Expect = 2e-53
Identities = 31/178 (17%), Positives = 76/178 (42%), Gaps = 15/178 (8%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEK--HITTLQASFLNKKLNIAGKRLN---LAIWD 70
K++++G GKT+++ + ++ K ++ T+ + + I KR L +WD
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDS-FEKVKNWVKELKKMLGNDICLTIAGNK 129
AG+E F++ P + + VYD++ + + +K W+ +K + + + G
Sbjct: 63 FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKA-RASSSPVILVGTH 121
Query: 130 IDLEKQR---TVMQEDAEKYAQSVG-----AVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+D+ ++ M + ++ G HF + + + + ++ + L
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 177 bits (450), Expect = 6e-53
Identities = 40/185 (21%), Positives = 71/185 (38%), Gaps = 12/185 (6%)
Query: 3 ANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKL----- 57
A S KV L+G+G GKTS++ + + + F+ K T + + K+
Sbjct: 29 ARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKG 88
Query: 58 ---NIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELK 114
+ K WD GQE HA + S+ +L+ D + W++ ++
Sbjct: 89 LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIE 145
Query: 115 KMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174
K G + + NKID + Q+ + ++ S K G+E + L
Sbjct: 146 KYGGKSPVI-VVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKS 204
Query: 175 RMLEK 179
+L
Sbjct: 205 AVLHP 209
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 166 bits (423), Expect = 2e-52
Identities = 31/174 (17%), Positives = 78/174 (44%), Gaps = 6/174 (3%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
+ +LG GK+++ ++++ +F ++ L+ ++ + + + + ++L +
Sbjct: 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVM 74
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKEL---KKMLGNDICLTIA 126
DTA + Y ++ ++VY + SF+ ++++ L K I +
Sbjct: 75 DTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLL 133
Query: 127 GNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNR-GIEEMFLELSQRMLEK 179
GNK+D+ + R V + + A G + F SA ++ ++ +F E + +
Sbjct: 134 GNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARRE 187
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 166 bits (422), Expect = 2e-52
Identities = 33/182 (18%), Positives = 76/182 (41%), Gaps = 13/182 (7%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
S ++ +LG+ GK+S++ R++ + + T + K++ + G+ + I
Sbjct: 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQY-KKEMLVDGQTHLVLIR 59
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-----ICLT 124
+ AG + ++ + V+ + DE+SF+ V +L + G + L
Sbjct: 60 EEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALV 114
Query: 125 IAGNKIDLEKQRTVMQEDAEKY-AQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEF 183
++I R V A A ++ T A ++ +F E++Q+++ ++
Sbjct: 115 GTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQ 174
Query: 184 DL 185
L
Sbjct: 175 QL 176
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 161 bits (410), Expect = 3e-50
Identities = 42/188 (22%), Positives = 83/188 (44%), Gaps = 9/188 (4%)
Query: 1 MMANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRY--VEDKFNEKHITTLQASFLNKKLN 58
M +S+ + S ++VVL+GE VGK+++ + V D + + L
Sbjct: 23 MSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLG-EDTYERTLM 81
Query: 59 IAGKRLNLA---IWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKK 115
+ G+ + +W+ G+ + L ++ + ++VY ITD SFEK +L++
Sbjct: 82 VDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRR 139
Query: 116 MLGND-ICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174
+ I + + GNK DL + R V + A TSA + ++E+F + +
Sbjct: 140 ARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVR 199
Query: 175 RMLEKAQE 182
++ +
Sbjct: 200 QVRLRRDS 207
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 147 bits (373), Expect = 6e-45
Identities = 43/184 (23%), Positives = 86/184 (46%), Gaps = 10/184 (5%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLN--KKLNI 59
M + + + K+V++G+G VGKT ++L + + + ++ T+ F N +
Sbjct: 10 MNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV---FENFSHVMKY 66
Query: 60 AGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLG 118
+ L +WDTAGQE + L P+ Y S+ +L + + + SF+ + W E+K +
Sbjct: 67 KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID 126
Query: 119 NDICLTIAGNKIDL--EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQR 175
+ G K+DL + V +++ + Q +G V + S+ G+ E+F +
Sbjct: 127 T-AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDC 185
Query: 176 MLEK 179
+
Sbjct: 186 IFSN 189
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 147 bits (373), Expect = 6e-45
Identities = 42/189 (22%), Positives = 86/189 (45%), Gaps = 11/189 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRY--VEDKFNEKHITTLQASFLNKKLNIAGKRLNLA---IWD 70
++VVL+GE VGK+++ + V D + + L + G+ + +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLG-EDTYERTLMVDGESATIILLDMWE 65
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNK 129
G+ + L ++ + ++VY ITD SFEK +L++ + I + + GNK
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 130 IDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK--AQEFDLAK 187
DL + R V + A TSA + ++E+F + +++ + ++E + +
Sbjct: 124 SDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERR 183
Query: 188 ASELSRRGS 196
+ R+ S
Sbjct: 184 LAYQKRKES 192
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 138 bits (349), Expect = 2e-41
Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLN--KKLNIAGKRLNLAI 68
S++ K V +G+G VGKT +++ Y + F ++ T+ F N + + G +NL +
Sbjct: 4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV---FDNFSANVVVNGATVNLGL 60
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAG 127
WDTAGQE ++ L P+ YR ++ +L + + + S+E V W+ ELK + + + G
Sbjct: 61 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIVLVG 119
Query: 128 NKIDL----------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLE 171
K+DL + E+ + +GA + S+K ++ +F
Sbjct: 120 TKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDA 174
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 137 bits (348), Expect = 7e-41
Identities = 53/199 (26%), Positives = 101/199 (50%), Gaps = 14/199 (7%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
+ S + K V +G+G VGKT +++ Y +KF +I T+ +F + + + G+ +NL +
Sbjct: 3 HMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGL 61
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGND-ICLTIA 126
WDTAGQE + L P+ YR ++ VL + + + S+E V W+ EL++ N I L
Sbjct: 62 WDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVL--V 119
Query: 127 GNKIDL--------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRML 177
G K+DL + + E+ + +GA + S+K + ++ +F + +L
Sbjct: 120 GTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 179
Query: 178 EKAQEFDLAKASELSRRGS 196
+ + ++ + + RR
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 136 bits (345), Expect = 2e-40
Identities = 52/190 (27%), Positives = 93/190 (48%), Gaps = 16/190 (8%)
Query: 7 DRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNL 66
+ S KVVL+G+G GKTS+++ + + F E + T+ + L + GK ++L
Sbjct: 26 EEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHL 84
Query: 67 AIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTI 125
IWDTAGQ+ + L P++Y ++ +L +D+T +SF+ + N W E+ + + +
Sbjct: 85 HIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKK-VPIIV 143
Query: 126 AGNKIDLE------------KQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLEL 172
G K DL V ++ A+SVGAV + SA+++ + +F E
Sbjct: 144 VGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEA 203
Query: 173 SQRMLEKAQE 182
++ L
Sbjct: 204 AEVALSSRGR 213
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 134 bits (338), Expect = 2e-39
Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
S K+V++G+G GKT +++ + +D+F E ++ T+ ++ + + GK++ LA+
Sbjct: 19 YFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELAL 77
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAG 127
WDTAGQE + L P+ Y ++ ++ + + DS E + WV E+K N + + +
Sbjct: 78 WDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN-VPIILVA 136
Query: 128 NKIDL------------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLE 171
NK DL KQ V +D A + A + SAK G+ E+F
Sbjct: 137 NKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFET 193
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 130 bits (329), Expect = 3e-38
Identities = 48/183 (26%), Positives = 91/183 (49%), Gaps = 16/183 (8%)
Query: 3 ANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGK 62
+ ++ + K V++G+G VGKT +++ Y + F ++I T+ ++ + + + GK
Sbjct: 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGK 76
Query: 63 RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDI 121
+NL +WDTAGQE + L P+ Y ++ ++ + + SFE V+ W E++ N
Sbjct: 77 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP 136
Query: 122 CLTIAGNKIDL------------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEM 168
+ + G K+DL +K + A+ +GAV + SA RG++ +
Sbjct: 137 II-LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 195
Query: 169 FLE 171
F E
Sbjct: 196 FDE 198
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 130 bits (329), Expect = 3e-38
Identities = 50/174 (28%), Positives = 88/174 (50%), Gaps = 16/174 (9%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDT 71
+ K+V++G+G GKT +++ + +D+F E ++ T+ ++ + + GK++ LA+WDT
Sbjct: 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDT 80
Query: 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAGNKI 130
AGQE + L P+ Y ++ ++ + I DS E + W E+K N + + + GNK
Sbjct: 81 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKK 139
Query: 131 DL------------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLE 171
DL KQ V E+ A + A + SAK G+ E+F
Sbjct: 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEM 193
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 128 bits (324), Expect = 1e-37
Identities = 52/177 (29%), Positives = 93/177 (52%), Gaps = 16/177 (9%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
+ K V++G+G VGKT +++ Y D F E+++ T+ + + + GK+ L +
Sbjct: 12 HGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGL 70
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAG 127
+DTAGQE + L P+ Y M++ ++ + + + SF+ VK WV ELK+ N L + G
Sbjct: 71 YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFL-LIG 129
Query: 128 NKIDL------------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLE 171
+IDL K++ + E +K A+ +GA + SA +G++ +F E
Sbjct: 130 TQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 128 bits (324), Expect = 2e-37
Identities = 48/179 (26%), Positives = 87/179 (48%), Gaps = 18/179 (10%)
Query: 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLA 67
+ K VL+G+G VGKTS+V+ Y + + ++I T +F + +++ G+ + L
Sbjct: 13 AGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQ 71
Query: 68 IWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGND-ICLTI 125
+ DTAGQ+ F L P+ Y ++ +L + + SF+ V WV E++ I L
Sbjct: 72 LCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIIL-- 129
Query: 126 AGNKIDLE------------KQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLE 171
G + DL K++ V +E A+ A+ + A + SA + ++E+F
Sbjct: 130 VGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDA 188
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 126 bits (318), Expect = 8e-37
Identities = 39/175 (22%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
S+ K+V++G+ GKT+++ + +D F E ++ T+ ++ I +R+ L++W
Sbjct: 2 SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLW 60
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAGN 128
DT+G + + P+ Y S+ ++ +DI+ ++ + V W E+++ N + + G
Sbjct: 61 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN-TKMLLVGC 119
Query: 129 KIDL------------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMN-RGIEEMF 169
K DL +Q V + A+ +GA + SA + + ++F
Sbjct: 120 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 123 bits (310), Expect = 2e-35
Identities = 39/185 (21%), Positives = 86/185 (46%), Gaps = 19/185 (10%)
Query: 1 MMANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA 60
++ + + K+V++G+ GKT+++ + +D F E ++ T+ ++ I
Sbjct: 14 LVPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEID 72
Query: 61 GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGN 119
+R+ L++WDT+G + + P+ Y S+ ++ +DI+ ++ + V W E+++ N
Sbjct: 73 TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN 132
Query: 120 -DICLTIAGNKIDL------------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMN-RG 164
+ L G K DL +Q V + A+ +GA + SA +
Sbjct: 133 TKMLL--VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 190
Query: 165 IEEMF 169
+ ++F
Sbjct: 191 VRDIF 195
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 122 bits (307), Expect = 4e-35
Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 16/174 (9%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDT 71
S + K V++G+G VGKT +++ Y + F ++I T+ ++ + + + GK +NL +WDT
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDT 60
Query: 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAGNKI 130
AGQE + L P+ Y ++ +++ + + SFE V+ W E++ N + + G K+
Sbjct: 61 AGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKL 119
Query: 131 DL------------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLE 171
DL +K + A+ +GAV + SA RG++ +F E
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 173
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 121 bits (306), Expect = 1e-34
Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 17/186 (9%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
K+VL+G+ GKT+++ +D + E ++ T+ ++ L +R+ L++WD
Sbjct: 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWD 81
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNK 129
T+G + + P+ Y S+ +L +DI+ ++ + K W E+ + + + G K
Sbjct: 82 TSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS-TRVLLIGCK 140
Query: 130 IDL------------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMN-RGIEEMFLELSQR 175
DL +KQ + E A+ +GA + SA + + I +F S
Sbjct: 141 TDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASML 200
Query: 176 MLEKAQ 181
L K
Sbjct: 201 CLNKPS 206
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 96.6 bits (240), Expect = 4e-24
Identities = 46/185 (24%), Positives = 91/185 (49%), Gaps = 16/185 (8%)
Query: 1 MMANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA 60
+ + + + ++ K V++G+G VGKT +++ Y + F ++I T+ ++ + + +
Sbjct: 141 IKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD 199
Query: 61 GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGN 119
GK +NL +WDTAG E + L P+ Y ++ ++ + + SF V+ W E++ N
Sbjct: 200 GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPN 259
Query: 120 DICLTIAGNKIDL------------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIE 166
+ + G K+DL +K + A+ +GAV + SA RG++
Sbjct: 260 TPII-LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 318
Query: 167 EMFLE 171
+F E
Sbjct: 319 TVFDE 323
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 87.1 bits (216), Expect = 2e-21
Identities = 39/184 (21%), Positives = 69/184 (37%), Gaps = 23/184 (12%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKF-----------NEKHITTLQASFLNKKL-NIAGK 62
+FK+V G G GKT+ L+++ K + TL FL + + G
Sbjct: 14 NFKIVYYGPGLSGKTTN-LKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGF 72
Query: 63 RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN--- 119
+ ++ GQ ++A + R +G V V D ++ + +++ L
Sbjct: 73 KTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESM-RNMRENLAEYGL 131
Query: 120 ---DICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVH-FHTSAKMNRGIEEMFLELSQR 175
D+ + I NK DL V E G A +G+ E E+S+
Sbjct: 132 TLDDVPIVIQVNKRDLPDALPV--EMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRL 189
Query: 176 MLEK 179
+L +
Sbjct: 190 VLAR 193
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 83.9 bits (207), Expect = 7e-20
Identities = 29/155 (18%), Positives = 58/155 (37%), Gaps = 12/155 (7%)
Query: 34 RYVEDKFNEKHITTLQASF----LNKKLNIAGKRLNLAIWDTAGQERF--HALGPIYYRM 87
+++D+ + H +T + KL A K L D G E+ P +
Sbjct: 104 EFIDDQTFQPHRSTALQPYIKRAAATKLASAEK-LMYFCTDQLGLEQDFEQKQMPDGKLL 162
Query: 88 SNGAVLVYDITDED--SFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEKQRTVMQEDAE 144
+G +L D++ +F+ +V L L + + K D +R +
Sbjct: 163 VDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTF 222
Query: 145 KYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
++ TSA+ N ++ F L ++++K
Sbjct: 223 ALSKK-NLQVVETSARSNVNVDLAFSTLV-QLIDK 255
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 73.5 bits (180), Expect = 9e-16
Identities = 26/183 (14%), Positives = 68/183 (37%), Gaps = 17/183 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQA-SFLNKKLNIAGKRLNLAIWDTAGQE 75
K++L+G GK+S + + ++ L A + + L +WD GQ+
Sbjct: 5 KLLLMGRSGSGKSS-MRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63
Query: 76 RF-----HALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN--DICLTIAGN 128
F ++M + V+D+ + + ++ + K LK++ D + + +
Sbjct: 64 VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLH 123
Query: 129 KIDL--EKQRTVMQEDAEKYAQS------VGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180
K+DL +R + + K + ++ + + + + ++ ++
Sbjct: 124 KMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLIPNM 183
Query: 181 QEF 183
Sbjct: 184 SNH 186
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 70.8 bits (173), Expect = 2e-15
Identities = 35/191 (18%), Positives = 78/191 (40%), Gaps = 18/191 (9%)
Query: 3 ANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASF-LNKKLNIAG 61
++ + +++L+G GK+S + + V K + L+++ + K
Sbjct: 8 SSGRENLYFQGSKPRILLMGLRRSGKSS-IQKVVFHKMSPNETLFLESTNKIYKDDISNS 66
Query: 62 KRLNLAIWDTAGQERFHALGP---IYYRMSNGAVLVYDITDE--DSFEKVKNWVKELKKM 116
+N IWD GQ F + +R + + V D D+ ++ ++ V + K+
Sbjct: 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV 126
Query: 117 LGNDICLTIAGNKIDL-------EKQRTVMQ---EDAEKYAQSVGAVHFHTSAKMNRGIE 166
D+ + +K+D E QR + Q +D + F+ ++ + I
Sbjct: 127 N-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIF 185
Query: 167 EMFLELSQRML 177
E F ++ Q+++
Sbjct: 186 EAFSKVVQKLI 196
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 62.3 bits (152), Expect = 2e-12
Identities = 40/172 (23%), Positives = 65/172 (37%), Gaps = 17/172 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++++LG GKT+++ R + E T F + L+ K L L +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRL---QIGEVVTTKPTIGFNVETLSY--KNLKLNVWDLGGQT 73
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKID 131
YY + + V D TD+D EL ML + L + NK D
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASK---ELHLMLQEEELQDAALLVFANKQD 130
Query: 132 LEKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNRGIEEMFLELSQRMLEK 179
+ E +++ + + +SA GI E L + E+
Sbjct: 131 QPGALSA-SEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 60.8 bits (148), Expect = 9e-12
Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 17/172 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+++++G GKT+++ + K E T F + + K + +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNICFTVWDVGGQD 84
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKID 131
+ L Y++ + G + V D D + ++ + EL+KML D L + NK D
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESAD---ELQKMLQEDELRDAVLLVFANKQD 141
Query: 132 LEKQRTVMQEDAEKYA----QSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+ V E +K +S T A G+ + LS + ++
Sbjct: 142 MPNAMPV-SELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 60.0 bits (146), Expect = 1e-11
Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 17/173 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+V++LG GKTS++ R + T+ + L K ++ +WD GQ
Sbjct: 23 IRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTV--GVNLETLQY--KNISFEVWDLGGQT 77
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKID 131
Y+ ++ + V D TD D K+ EL +L D L I NK D
Sbjct: 78 GVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKH---ELYALLDEDELRKSLLLIFANKQD 134
Query: 132 LEKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNRGIEEMFLELSQRMLEKA 180
L + E AE+ S+ + +S+K G+ E L +R+ E+
Sbjct: 135 LPDAASE-AEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQG 186
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 59.5 bits (145), Expect = 2e-11
Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
+++++G GKT+++ + K E +TT+ N + + K ++ +WD GQ++
Sbjct: 2 RILMVGLDAAGKTTILYKL---KLGE-IVTTIPTIGFNVE-TVEYKNISFTVWDVGGQDK 56
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKIDL 132
L Y++ + G + V D D + + + EL +ML D L + NK DL
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFANKQDL 113
Query: 133 EKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNRGIEEMFLELSQRMLEK 179
E +K S+ +++ T A G+ E LS ++ +
Sbjct: 114 PNAMNA-AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 59.5 bits (145), Expect = 2e-11
Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 16/172 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++ L+G GKT+ V +FNE I T+ F +K+ + + +WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTV--GFNMRKITK--GNVTIKLWDIGGQP 78
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKID 131
RF ++ Y R + V + D D++ E KN EL +L I + + GNK D
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKN---ELHNLLDKPQLQGIPVLVLGNKRD 135
Query: 132 LEKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNRGIEEMFLELSQRMLEK 179
L +E EK ++ S K I+ L Q +
Sbjct: 136 LPGALDE-KELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 58.8 bits (143), Expect = 4e-11
Identities = 39/174 (22%), Positives = 73/174 (41%), Gaps = 17/174 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
KV+++G GKT+++ ++ NE T+ +++ I +WD GQE
Sbjct: 17 HKVIIVGLDNAGKTTILYQF---SMNEVVHTSPTIGSNVEEIVI--NNTRFLMWDIGGQE 71
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKID 131
+ YY + ++V D TD + + EL KML ++ L I NK D
Sbjct: 72 SLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE---ELYKMLAHEDLRKAGLLIFANKQD 128
Query: 132 LEKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNRGIEEMFLELSQRMLEKAQ 181
+++ TV E ++ S+ +H A G+ + + R+ + +
Sbjct: 129 VKECMTV-AEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLE 181
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 58.8 bits (143), Expect = 5e-11
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 27/179 (15%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V LG GKT+++ +D+ + H+ TL +++L IAG +D G +
Sbjct: 27 KLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLH--PTSEELTIAGMTFT--TFDLGGHIQ 81
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKIDL 132
+ Y NG V + D D + + K +EL ++ ++ + + I GNKID
Sbjct: 82 ARRVWKNYLPAINGIVFLVDCADHERLLESK---EELDSLMTDETIANVPILILGNKIDR 138
Query: 133 EKQRTVMQ--EDAEKYAQSVGAVH-------------FHTSAKMNRGIEEMFLELSQRM 176
+ + + E Y Q+ G F S +G E F ++Q +
Sbjct: 139 PEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 57.6 bits (140), Expect = 9e-11
Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 17/172 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++++LG GKT+++ R + I T+ F + + K L +WD G
Sbjct: 8 MRILILGLDGAGKTTILYRLQVGEVVT-TIPTI--GFNVETVTY--KNLKFQVWDLGGLT 62
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKID 131
YY ++ + V D D D K+ EL ML + L + NK D
Sbjct: 63 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS---ELVAMLEEEELRKAILVVFANKQD 119
Query: 132 LEKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNRGIEEMFLELSQRMLEK 179
+E+ T E A ++ + TSA G++E L + + +
Sbjct: 120 MEQAMTS-SEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 57.2 bits (139), Expect = 1e-10
Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 22/176 (12%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
K++ LG GKT+++ D+ T +++L I + +D G
Sbjct: 23 HGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTW--HPTSEELAI--GNIKFTTFDLGGH 77
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKI 130
+ L Y+ NG V + D D + F++ + EL + + I GNKI
Sbjct: 78 IQARRLWKDYFPEVNGIVFLVDAADPERFDEAR---VELDALFNIAELKDVPFVILGNKI 134
Query: 131 DL------EKQRTVMQEDAEKYAQSVGAVH----FHTSAKMNRGIEEMFLELSQRM 176
D + R+ + +Q + F S M G E F LSQ +
Sbjct: 135 DAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 57.3 bits (139), Expect = 2e-10
Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 17/177 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++++LG GKT+++ ++ + T N K + + L IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKF---NGED-VDTISPTLGFNIK-TLEHRGFKLNIWDVGGQK 73
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKID 131
+ Y+ ++G + V D D + + EL+ +L + L I NK D
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQR---ELQSLLVEERLAGATLLIFANKQD 130
Query: 132 LEKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNRGIEEMFLELSQRMLEKAQEFD 184
L + E S+ + H+ SA + L + + D
Sbjct: 131 LPGALSC-NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRVFTAD 186
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 57.2 bits (139), Expect = 2e-10
Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 17/174 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+++LLG GKT+++ + + T F K + + L +WD GQ
Sbjct: 17 VRILLLGLDNAGKTTLLKQL---ASEDISHITPTQGFNIKSVQS--QGFKLNVWDIGGQR 71
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKID 131
+ Y+ ++ + V D D FE+ EL ++L + + + I NK D
Sbjct: 72 KIRPYWRSYFENTDILIYVIDSADRKRFEETGQ---ELTELLEEEKLSCVPVLIFANKQD 128
Query: 132 LEKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNRGIEEMFLELSQRMLEKAQ 181
L E AE ++ + SA G+++ + + + K +
Sbjct: 129 LLTAAPA-SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKKK 181
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 56.5 bits (137), Expect = 2e-10
Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 28/192 (14%)
Query: 2 MANSLDRNSSSTYSF-------KVVLLGEGCVGKTSVVLRYVEDKFNE--KHITTLQASF 52
M +S + S+ KV+++G GKT+++ ++ NE T+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQF---SMNEVVHTSPTI--GS 55
Query: 53 LNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKE 112
+++ I +WD GQE + YY + ++V D TD + + E
Sbjct: 56 NVEEIVI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE---E 110
Query: 113 LKKMLGND----ICLTIAGNKIDLEKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNRG 164
L KML ++ L I NK D+++ TV E ++ S+ +H A G
Sbjct: 111 LYKMLAHEDLRKAGLLIFANKQDVKECMTV-AEISQFLKLTSIKDHQWHIQACCALTGEG 169
Query: 165 IEEMFLELSQRM 176
+ + + R+
Sbjct: 170 LCQGLEWMMSRL 181
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 55.7 bits (135), Expect = 5e-10
Identities = 38/193 (19%), Positives = 75/193 (38%), Gaps = 26/193 (13%)
Query: 2 MANSLDRNSSSTYSFK-------VVLLGEGCVGKTSVVLRY-VEDKFNEKHITTLQASFL 53
M +S + S+ V+ LG GKT+++ + + ++ + T+ F
Sbjct: 1 MGSSHHHHHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTI--GFS 58
Query: 54 NKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKEL 113
+K L+ ++D +GQ R+ L YY+ + V D +D K EL
Sbjct: 59 IEKFKS--SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKE---EL 113
Query: 114 KKML------GNDICLTIAGNKIDLEKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNR 163
+L I + NK+DL T + ++ +++ +H + A
Sbjct: 114 DTLLNHPDIKHRRIPILFFANKMDLRDAVTS-VKVSQLLCLENIKDKPWHICASDAIKGE 172
Query: 164 GIEEMFLELSQRM 176
G++E L ++
Sbjct: 173 GLQEGVDWLQDQI 185
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 56.2 bits (135), Expect = 1e-09
Identities = 31/181 (17%), Positives = 71/181 (39%), Gaps = 18/181 (9%)
Query: 18 VVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF 77
V+L+G GK+S + + V L+++ + + ++LA+ + GQ +
Sbjct: 2 VLLMGVRRCGKSS-ICKVVFHNMQPLDTLYLESTSNPSLEHFSTL-IDLAVMELPGQLNY 59
Query: 78 HALGPI---YYRMSNGAVLVYDITD--EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
++ V V D D ++ + ++ K+ I + + +K+D
Sbjct: 60 FEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDG 118
Query: 133 -------EKQRTVMQ---EDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+ QR +MQ E+ + V F+ ++ + I E F + Q+++ +
Sbjct: 119 LSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHSIYEAFSRIVQKLIPELSF 178
Query: 183 F 183
Sbjct: 179 L 179
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 52.0 bits (125), Expect = 1e-08
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 21/135 (15%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
+Y +++ G GKTS++ D + + + + G + L
Sbjct: 43 GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEP---LSAADYDGSGVTL--V 96
Query: 70 DTAGQERFHALGPIYYRMSNGAV--LVYDI---TDEDSFEKVKNWVKELKKMLGND---- 120
D G + Y + V L++ + D + L +L
Sbjct: 97 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTA---EFLVDILSITESSC 153
Query: 121 ---ICLTIAGNKIDL 132
I + IA NK +L
Sbjct: 154 ENGIDILIACNKSEL 168
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 50.5 bits (121), Expect = 6e-08
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 21/135 (15%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
+Y +++ G GKTS++ D + + + + G + L
Sbjct: 7 KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEP---LSAADYDGSGVTL--V 60
Query: 70 DTAGQERFHALGPIYYRMSNGAV--LVYDI---TDEDSFEKVKNWVKELKKMLGND---- 120
D G + Y + V L++ + D + L +L
Sbjct: 61 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTA---EFLVDILSITESSC 117
Query: 121 ---ICLTIAGNKIDL 132
I + IA NK +L
Sbjct: 118 ENGIDILIACNKSEL 132
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 48.0 bits (114), Expect = 7e-07
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 12/126 (9%)
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND- 120
K ++ +WD GQ++ L Y++ + G + V D D + + + EL +ML D
Sbjct: 207 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDE 263
Query: 121 ---ICLTIAGNKIDLEKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNRGIEEMFLELS 173
L + NK DL E +K S+ +++ T A G+ E LS
Sbjct: 264 LRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 322
Query: 174 QRMLEK 179
++ +
Sbjct: 323 NQLRNQ 328
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 48.0 bits (114), Expect = 7e-07
Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 12/126 (9%)
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN-- 119
K + +WD GQ++ L YY + G + V D D D ++ + EL +++ +
Sbjct: 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ---ELHRIINDRE 420
Query: 120 --DICLTIAGNKIDLEKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNRGIEEMFLELS 173
D + I NK DL E EK + +++ + A G+ E L+
Sbjct: 421 MRDAIILIFANKQDLPDAMKP-HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 479
Query: 174 QRMLEK 179
K
Sbjct: 480 SNYKSK 485
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 47.0 bits (112), Expect = 8e-07
Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 11/130 (8%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
+ + V+ +G GKT + +R + ++ + T++ S K+N + +L +
Sbjct: 2 ARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRD-TQTSITDSSAIYKVN-NNRGNSLTLI 59
Query: 70 DTAGQERF-HALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND------IC 122
D G E L + + V V D K + L ++L +
Sbjct: 60 DLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDV--AEFLYQVLIDSMALKNSPS 117
Query: 123 LTIAGNKIDL 132
L IA NK D+
Sbjct: 118 LLIACNKQDI 127
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 41.0 bits (97), Expect = 7e-05
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG 151
+ + D T D+ + + W E L + +T+ NK D+ + M E G
Sbjct: 88 LFMVDGTTTDAVDPAEIW-PEFIARLPAKLPITVVRNKADITGETLGMSEVN-------G 139
Query: 152 AVHFHTSAKMNRGIEEMFLELSQRMLEKA 180
SA+ G++ L + +
Sbjct: 140 HALIRLSARTGEGVD----VLRNHLKQSM 164
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 41.6 bits (98), Expect = 1e-04
Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 18/146 (12%)
Query: 70 DTAGQERFHALGPIYYRMSNGA-------VLVYDITDEDSFEKVKNWVKELKKMLGNDIC 122
DT G + LG + + +LV D + V N KE++
Sbjct: 89 DTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEI----PFV 144
Query: 123 LTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+ + NKID+ ++ +E Y A SA +G +++ +S+ + +
Sbjct: 145 VVV--NKIDVLGEKA--EELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGDEEI 200
Query: 183 FDLAKASELSRRGSMRRNVVVVEDED 208
L +L G + VV ++
Sbjct: 201 PYL---GDLIDGGDLVILVVPIDLGA 223
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 39.8 bits (94), Expect = 3e-04
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 9/100 (9%)
Query: 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG 151
+ + D+ E +++ +ELK LT+A NK+D + G
Sbjct: 317 LYLLDLGTERLDDELTEI-RELKAAHPAAKFLTVA-NKLDRAANADALIRAIADGT---G 371
Query: 152 AVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASEL 191
SA GI+ L Q M + + D + +
Sbjct: 372 TEVIGISALNGDGID----TLKQHMGDLVKNLDKLHEASV 407
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.001
Identities = 30/211 (14%), Positives = 67/211 (31%), Gaps = 53/211 (25%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
S T LL + +V ++VE+ + FL + +
Sbjct: 62 SGTLRLFWTLLSKQ----EEMVQKFVEEVLRINY------KFLMSPIKTEQR-------Q 104
Query: 71 TAGQERFHALGPIYYR--MSNGAVLV--YDITDEDSFEKVKNWVKELKK--------MLG 118
+ R + I R + N + Y+++ + K++ + EL+ +LG
Sbjct: 105 PSMMTRMY----IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 119 NDICLTIAGNKIDLEKQRTVMQ--EDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
+G K + + + + + N E LE+ Q++
Sbjct: 161 -------SG------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS--PETVLEMLQKL 205
Query: 177 LEKAQEFDLAKASELSRRGSMRRNVVVVEDE 207
L + D S +++ + ++ E
Sbjct: 206 LYQ---IDPNWTSRSDHSSNIKLRIHSIQAE 233
Score = 33.3 bits (75), Expect = 0.057
Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 38/126 (30%)
Query: 37 EDKFNEKHITTLQASFLNKKLNIAGKRLNL--AIWDTAGQERFHALGPIYYRMSNGAVLV 94
++ + L FL +K+ N +I +T Q +F Y+
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-------YKP------- 532
Query: 95 YDITDED-SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQ-----------ED 142
Y I D D +E++ V + L + K +++ E+
Sbjct: 533 Y-ICDNDPKYERL---VNAILDFLPK------IEENLICSKYTDLLRIALMAEDEAIFEE 582
Query: 143 AEKYAQ 148
A K Q
Sbjct: 583 AHKQVQ 588
Score = 31.7 bits (71), Expect = 0.22
Identities = 26/202 (12%), Positives = 60/202 (29%), Gaps = 55/202 (27%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKK---------------L 57
T FK V T + L + + +L +L+ + L
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 58 NIAGKRL--NLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELK 114
+I + + LA WD ++ N L I E S ++ +++
Sbjct: 331 SIIAESIRDGLATWD-------------NWKHVNCDKLTTII--ESSLNVLEPAEYRKMF 375
Query: 115 KMLG---NDI-----CLTIAGNKIDLEKQRTVMQE---------DAEKYAQSVGAVHFHT 157
L L++ + V+ + ++ S+ +++
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 158 SAKMNRGIEEMFLELSQRMLEK 179
K +E + L + +++
Sbjct: 436 KVK----LENEY-ALHRSIVDH 452
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 36.0 bits (83), Expect = 0.006
Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 91 AVLVY--DITDE--DSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKY 146
+++Y D ++ E+ + +E+ + L + NKID+ + + + EK+
Sbjct: 248 NLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFL-VVINKIDVADEENI--KRLEKF 304
Query: 147 AQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRR 194
+ G SA GI+ + E+ + + A++ K RR
Sbjct: 305 VKEKGLNPIKISALKGTGIDLVKEEIIKTLRPLAEKVAREKIERELRR 352
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 36.4 bits (85), Expect = 0.006
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 13/100 (13%)
Query: 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG 151
+ V D + E +++ + + N L + NK+D+ ++ E+ K
Sbjct: 328 LFVLDASSPLDEE-----DRKILERIKNKRYLVVI-NKVDVVEKIN---EEEIKNKLGTD 378
Query: 152 AVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASEL 191
SA G+E +L + + + QE + L
Sbjct: 379 RHMVKISALKGEGLE----KLEESIYRETQEIFERGSDSL 414
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.1 bits (80), Expect = 0.008
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 22/91 (24%)
Query: 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKID--LEKQRTVMQEDAEK---- 145
+ D ++ E ++ W +E +K L ++D + +E A+K
Sbjct: 74 IAQADRLTQEP-ESIRKWREEQRKRL----------QELDAASKVMEQEWREKAKKDLEE 122
Query: 146 -YAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175
+ + + NR ++ F + Q
Sbjct: 123 WNQRQ--SEQVEKNKINNRIADKAFYQ--QP 149
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 34.0 bits (78), Expect = 0.026
Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 10/113 (8%)
Query: 91 AVLVY--DITDED--SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAE-- 144
V+++ DI+++ + ++ N +K + N + I NKID ++ ++
Sbjct: 110 GVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIV-IGFNKIDKCNMDSLSIDNKLLI 168
Query: 145 ---KYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRR 194
S G+E+ + + + E L +L
Sbjct: 169 KQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQAESILLDQEQLLNT 221
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 33.2 bits (77), Expect = 0.051
Identities = 13/92 (14%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG 151
+L D + +E+ + + + + + NKIDL +++ + + + +
Sbjct: 308 LLTIDAATGWTTG-----DQEIYEQVKHRPLILVM-NKIDLVEKQLITSLEYPENITQI- 360
Query: 152 AVHFHTSAKMNRGIEEMFLELSQRMLEKAQEF 183
HT+A +GI+ + + + + +
Sbjct: 361 ---VHTAAAQKQGIDSLETAILEIVQTGKVQA 389
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.087
Identities = 37/230 (16%), Positives = 62/230 (26%), Gaps = 85/230 (36%)
Query: 1 MMANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQ-ASFLNKKLNI 59
+ +D + FK + E TS R + + T Q A L
Sbjct: 1692 IFETIVDGKLKTEKIFK--EINEHS---TSYTFRSEKGLLSATQFT--QPALTL------ 1738
Query: 60 AGKRLNLAIWDT-------------AGQERFHALG------------PI-------YYR- 86
+ A ++ AG H+LG I +YR
Sbjct: 1739 ----MEKAAFEDLKSKGLIPADATFAG----HSLGEYAALASLADVMSIESLVEVVFYRG 1790
Query: 87 -------------MSNG---AVLVYDITDEDSFEKVKNWVKELKKMLG------NDIC-- 122
SN A+ + S E ++ V+ + K G N
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN 1850
Query: 123 --LTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170
AG+ L+ V+ + K Q + + S + +E
Sbjct: 1851 QQYVAAGDLRALDTVTNVL--NFIK-LQKIDIIELQKSLSLEE-VEGHLF 1896
Score = 31.9 bits (72), Expect = 0.19
Identities = 26/175 (14%), Positives = 48/175 (27%), Gaps = 51/175 (29%)
Query: 67 AIWDTAGQERFHALG----------P----IYYRMSNG-------AVLVYDITDEDSFEK 105
+W+ A G P I++ G + ++++ T D K
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE-TIVDGKLK 1702
Query: 106 VKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGI 165
+ KE+ + + T K L T ++ Q A+ +
Sbjct: 1703 TEKIFKEINEHSTS---YTFRSEKGLL--SAT-------QFTQP--AL-TLMEKAAFEDL 1747
Query: 166 EEMFLELSQRML------E------KAQEFDLAKASELSR-RGSMRRNVVVVEDE 207
+ L + E A + E+ RG + V DE
Sbjct: 1748 KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQV-AVPRDE 1801
Score = 26.6 bits (58), Expect = 8.9
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 2 MANSLDRNSSSTYSFK 17
+A +LD N Y FK
Sbjct: 529 VAGTLDINPDDDYGFK 544
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 32.0 bits (72), Expect = 0.12
Identities = 17/126 (13%), Positives = 33/126 (26%), Gaps = 18/126 (14%)
Query: 6 LDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLN 65
LD Y V+L+G GK+++ +N+K +
Sbjct: 15 LDNRIEDNYRVCVILVGSPGSGKSTIAEEL--------------CQIINEKYHTFLSEHP 60
Query: 66 LAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKK----MLGNDI 121
I + L + V + V++ + K N+
Sbjct: 61 NVIEVNDRLKPMVNLVDSLKTLQPNKVAEMIENQGLFKDHVEDVNFQPVKYSALTSNNEE 120
Query: 122 CLTIAG 127
C +
Sbjct: 121 CTAVVA 126
>3lml_A LIN1278 protein; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG, LKR115; 3.30A {Listeria innocua}
Length = 460
Score = 31.3 bits (70), Expect = 0.22
Identities = 9/55 (16%), Positives = 16/55 (29%)
Query: 79 ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
L + +D ++VK ++ G I +A D E
Sbjct: 196 FLVSAEGEYFDTIAFPVSSSDVALKTSFVSFVKRMRDEQGVKIKGVVANMPADYE 250
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 31.0 bits (71), Expect = 0.24
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 125 IAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFD 184
I NK+D+ + ++ EK F SA G+ E+ E++ LE EF
Sbjct: 279 IVANKMDMPEAAENLEAFKEKLTD--DYPVFPISAVTREGLRELLFEVAN-QLENTPEFP 335
Query: 185 LAKASEL 191
L EL
Sbjct: 336 LYDEEEL 342
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 30.3 bits (69), Expect = 0.43
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 188 ASELSRRGSMRRNVVVVEDEDLPTSSST 215
LS G VVV+E E P ST
Sbjct: 25 GYWLSAHGR----VVVLEREAQPGYHST 48
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 29.8 bits (67), Expect = 0.80
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 188 ASELSRRGSMRRNVVVVEDEDLPTSSST 215
A L +V+VV+ P S +
Sbjct: 39 AYYLKVWSG--GSVLVVDAGHAPGSGDS 64
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase;
HET: MSE; 1.89A {Coxiella burnetii}
Length = 261
Score = 29.4 bits (67), Expect = 0.90
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 11/42 (26%)
Query: 77 FHALGPIYYRMSNGAV----LVYDITDEDSFEKVKNWVKELK 114
F A+ ++ V L D+T ++F+++ +WVK L+
Sbjct: 226 FFAM-------NHHCVSITPLRVDLTHYEAFDQLASWVKRLE 260
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_9
Length = 189
Score = 28.9 bits (64), Expect = 1.1
Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQED 142
+ + G +Y + S +K+ + + + + L G V +
Sbjct: 3 VQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFI--APNTELVTDDV 60
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase;
HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A*
1ogy_A* 2nya_A*
Length = 802
Score = 28.9 bits (65), Expect = 1.4
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 10/65 (15%)
Query: 154 HFHT------SAKMNRGIEEMFLELSQRMLEKA--QEFDLAKASELSRRGSMRRNVVVVE 205
H+H+ ++ R + + + + + SRRG MR +
Sbjct: 698 HWHSGSMTRRVPELYRSFPNAVVFMHPEDAKALGLRRGVEVEVV--SRRGRMRSRIETRG 755
Query: 206 DEDLP 210
+ P
Sbjct: 756 RDAPP 760
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase
bifunctional periplasmic...; APC63187.2; HET: EPE TAM;
2.43A {Klebsiella pneumoniae subsp}
Length = 339
Score = 28.9 bits (65), Expect = 1.4
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 12/70 (17%)
Query: 96 DITDEDSFEKVKNWVKELKKMLGND--ICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV 153
+T D E + ++ E++ G D + + +G D M E++ Y V V
Sbjct: 180 KVTVNDITETARKYIPEMRAK-GADVVVVVAHSGLSADPY---QAMAENSVYYLSQVPGV 235
Query: 154 ------HFHT 157
H H
Sbjct: 236 DAIMFGHAHA 245
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 28.3 bits (63), Expect = 1.7
Identities = 27/165 (16%), Positives = 46/165 (27%), Gaps = 45/165 (27%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVV---LRYVEDKFNEKHI--TTLQASFLNKKLNIAGKR 63
S V++LG+G VGK+S V + E L+ + + G
Sbjct: 30 KQKDMNSMTVLVLGKGGVGKSSTVNSLIG--EQVVRVSPFQAEGLRP--VMVSRTMGGFT 85
Query: 64 LNLAIWDTAG-----------------QERFHALGPIYYRMSNGAVLVYD---ITDEDSF 103
+N I DT G + + Y V D + + D
Sbjct: 86 IN--IIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLY------VDRLDVYAVDELD-- 135
Query: 104 EKVKNWVKELKKMLGNDI--CLTIAGNKID-LEKQRTVMQEDAEK 145
K V + + G +I + + + K
Sbjct: 136 ---KQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK 177
>1k0m_A CLIC1, NCC27, chloride intracellular channel protein 1;
glutathione-S-tranferase superfamily, chloride ION
channel, metal transport; 1.40A {Homo sapiens} SCOP:
a.45.1.1 c.47.1.5 PDB: 1k0n_A* 1k0o_A 1rk4_A 3uvh_A
3o3t_A 3p90_A 3qr6_A 3p8w_A 3tgz_A 3ma4_A 3swl_A
Length = 241
Score = 28.4 bits (63), Expect = 1.7
Identities = 5/38 (13%), Positives = 11/38 (28%)
Query: 79 ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKM 116
L P + + T ++F V ++
Sbjct: 179 NLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAR 216
>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis,
DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania
infantum}
Length = 471
Score = 28.5 bits (64), Expect = 1.9
Identities = 5/37 (13%), Positives = 10/37 (27%)
Query: 79 ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKK 115
AL P R+ + ++K +
Sbjct: 182 ALVPFLVRLKPALMYYAGYDVFCKAPRMKALWAAAAQ 218
>1z3i_X Similar to RAD54-like; recombination ATPase helicase,
recombination-DNA binding COM; 3.00A {Danio rerio} SCOP:
c.37.1.19 c.37.1.19
Length = 644
Score = 28.0 bits (63), Expect = 3.1
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 106 VKNWVKELKKMLGNDI-CLTIAGNKIDLEKQR 136
V+NW E+ K LG + + I G D +
Sbjct: 126 VRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSK 157
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein,
stationary phase, phosph mononucleotidase, divalent
metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Length = 254
Score = 27.4 bits (62), Expect = 3.5
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 11/41 (26%)
Query: 77 FHALGPIYYRMSNGAV----LVYDITDEDSFEKVKNWVKEL 113
F A+ G V L D+T + + V +W+ +
Sbjct: 215 FAAV-------DEGYVSVTPLHVDLTAHSAHDVVSDWLDSV 248
>2r4v_A XAP121, chloride intracellular channel protein 2; chloride
intracellular channels, CLIC2, pore-forming protein
ryanodine receptor, chloride channel; HET: GSH; 1.85A
{Homo sapiens} PDB: 2r5g_A 2per_A*
Length = 247
Score = 27.2 bits (60), Expect = 3.8
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 79 ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKK 115
+L P + A D F V ++
Sbjct: 185 SLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYA 221
>2ahe_A Chloride intracellular channel protein 4; glutathione-S-transferase
superfamily, CLIC4, NCC27, chloride ION channel, metal
transport; 1.80A {Homo sapiens} PDB: 2d2z_A
Length = 267
Score = 27.3 bits (60), Expect = 4.1
Identities = 3/37 (8%), Positives = 9/37 (24%)
Query: 79 ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKK 115
L P + + A + + ++
Sbjct: 190 NLLPKLHIVKVVAKKYRNFDIPKEMTGIWRYLTNAYS 226
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 27.0 bits (61), Expect = 4.3
Identities = 8/58 (13%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 128 NKIDLEKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRMLEKAQEFD 184
NK+D +++ + + A + + SA+ ++ + + + + E F
Sbjct: 124 NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFP 181
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 27.5 bits (62), Expect = 4.3
Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 31/97 (31%)
Query: 98 TDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQE--DAEKYAQSVGAVHF 155
D DS E++K E+ L ++ ++ + E+ + + +
Sbjct: 424 KDPDSQERLKAIEAEIA----------------KLTEEIAKLRAEWERER--EILRKL-- 463
Query: 156 HTSAKMNRGIEEMFLELSQRMLEKAQ-EFDLAKASEL 191
+ ++E+ E+ E A+ ++DL +A+EL
Sbjct: 464 ---REAQHRLDEVRREI-----ELAERQYDLNRAAEL 492
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 26.9 bits (60), Expect = 4.8
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 21/114 (18%)
Query: 90 GAVLVYDI----TDEDSFEKVKNWVKELKKMLGNDICLTIAGNKID------LEKQRTVM 139
G +L+ D T+ D ++ W + K D
Sbjct: 118 GMILMMDARRPLTELD--RRMIEWFAP------TGKPIHSLLTKCDKLTRQESINALRAT 169
Query: 140 QEDAEKYAQSVGAVHFH---TSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASE 190
Q+ + Y + A SA G+++ + + A + D A +E
Sbjct: 170 QKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAADEDHAAVAE 223
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural
genomics, midwest CEN structural genomics (MCSG),
PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis}
PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Length = 217
Score = 26.9 bits (59), Expect = 5.5
Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASEL 191
EK++ + + ++ A + +H K+N I E ++ + + D+ K +
Sbjct: 3 AEKEKDTIAAEHKQEASVLLNLH---RNKINYLIGETMARMTSLSIAIDRPVDIKKMQSI 59
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 26.8 bits (60), Expect = 5.6
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 128 NKID-LEKQRTVMQEDAEKYAQSVGAVHFHT---SAKMNRGIEEMFLELSQRMLEKAQE 182
NKID + + EK ++ + + F SA +E + ++ Q + + E
Sbjct: 300 NKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLSLE 358
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP,
translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Length = 504
Score = 26.8 bits (60), Expect = 6.6
Identities = 5/29 (17%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 178 EKAQEFDLAKASELSRRGSMRRNVVVVED 206
+K E L L + ++ + D
Sbjct: 305 DKVNELKLDDNEALIEK--LKHGQFTLRD 331
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 26.7 bits (60), Expect = 6.9
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 128 NKIDLEKQRTVMQEDAEKYAQSVGAVH--FHTSAKMNRGIEEMFLELSQRM 176
NKID + ++ + + SA ++E+ + + +
Sbjct: 130 NKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYL 180
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 26.6 bits (58), Expect = 6.9
Identities = 26/168 (15%), Positives = 43/168 (25%), Gaps = 21/168 (12%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHI-------TTLQASFLNKKLNIAGKRLNLAI 68
V + GE GK+S + E+ T++ N+
Sbjct: 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY-----KHPNIPNVVF 124
Query: 69 WDTAG--QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIA 126
WD G F + I+ + + K + M
Sbjct: 125 WDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMM---KKEFYFV 181
Query: 127 GNKIDL----EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170
K+D E D EK Q + +T + +FL
Sbjct: 182 RTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFL 229
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A
{Pseudomonas putida} SCOP: d.58.4.1
Length = 96
Score = 25.2 bits (55), Expect = 8.2
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 59 IAGKRLNLAIWDTAGQERFHAL 80
IAG N +++D E H
Sbjct: 46 IAGHYANYSVFDVPSVEALHDT 67
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme,
hydrolase, domain movement; HET: ATP; 1.70A {Escherichia
coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A
1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Length = 516
Score = 26.6 bits (59), Expect = 8.5
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 96 DITDEDSFEKVKNWVKELKKMLGNDI 121
DI ++ K ++EL++ DI
Sbjct: 161 DIEFRKPADEAKLVIQELQQTEKPDI 186
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 26.2 bits (57), Expect = 9.1
Identities = 9/90 (10%), Positives = 19/90 (21%), Gaps = 8/90 (8%)
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDI 121
R N + + +G + V + E + M
Sbjct: 100 SRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDE-FSHIMAMTDPAF 158
Query: 122 C------LTIAGNKIDLEKQRTVMQEDAEK 145
L ++ K+ A +
Sbjct: 159 GSSGRPLLVLSCISQGDVKRMPC-FYLAHE 187
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.366
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,276,270
Number of extensions: 191576
Number of successful extensions: 1012
Number of sequences better than 10.0: 1
Number of HSP's gapped: 838
Number of HSP's successfully gapped: 169
Length of query: 223
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 133
Effective length of database: 4,188,903
Effective search space: 557124099
Effective search space used: 557124099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.9 bits)