Query psy8727
Match_columns 300
No_of_seqs 171 out of 1529
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 17:41:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hx3_A Retinaldehyde-binding p 100.0 6.1E-59 2.1E-63 424.9 21.7 257 2-261 25-296 (316)
2 1r5l_A Alpha-TTP, protein (alp 100.0 9.1E-52 3.1E-56 367.8 21.8 241 31-276 4-252 (262)
3 1aua_A Phosphatidylinositol tr 100.0 1.2E-47 4E-52 347.4 14.9 241 12-261 10-269 (296)
4 3q8g_A CRAL-TRIO domain-contai 100.0 6.8E-47 2.3E-51 345.6 14.7 250 25-288 29-301 (320)
5 1olm_A SEC14-like protein 2; l 100.0 1.5E-45 5.1E-50 347.2 17.7 226 27-260 4-248 (403)
6 3pg7_A Neurofibromin; SEC lipi 99.1 1.1E-10 3.7E-15 102.6 8.7 131 110-249 9-142 (256)
7 3peg_A Neurofibromin; SEC14 do 99.0 5.3E-10 1.8E-14 99.8 7.2 132 111-250 28-162 (290)
8 1wgl_A TOLL-interacting protei 84.7 1.7 5.9E-05 28.5 4.8 40 35-82 9-48 (59)
9 1ufz_A Hypothetical protein BA 82.8 3.1 0.00011 29.1 5.6 51 26-83 24-75 (83)
10 2bwb_A Ubiquitin-like protein 77.6 7.8 0.00027 23.8 5.8 37 36-81 8-44 (46)
11 2dhy_A CUE domain-containing p 76.5 4.5 0.00016 27.2 4.7 40 36-83 19-58 (67)
12 1wj7_A Hypothetical protein (R 72.6 16 0.00056 26.7 7.2 60 14-82 18-77 (104)
13 1otr_A Protein CUE2; protein-p 71.7 7.7 0.00026 24.3 4.6 27 57-83 18-44 (49)
14 2di0_A Activating signal coint 71.4 7.9 0.00027 26.3 4.9 41 34-82 12-52 (71)
15 2dal_A Protein KIAA0794; FAS a 67.6 12 0.00043 24.4 5.3 40 32-80 12-51 (62)
16 1q02_A Sequestosome 1; helical 66.6 13 0.00045 23.4 4.8 26 56-81 23-48 (52)
17 3e21_A HFAF1, FAS-associated f 65.3 11 0.00038 23.1 4.3 35 35-78 5-40 (45)
18 2dam_A ETEA protein; KIAA0887, 64.5 19 0.00064 24.0 5.7 41 32-80 15-55 (67)
19 1z96_A DNA-damage, UBA-domain 61.1 9.8 0.00034 22.1 3.5 24 57-80 16-39 (40)
20 2dna_A Unnamed protein product 58.2 14 0.00047 24.8 4.1 38 36-82 20-57 (67)
21 2dah_A Ubiquilin-3; UBA domain 57.1 14 0.00049 23.4 3.9 39 36-83 10-48 (54)
22 2cwb_A Chimera of immunoglobul 56.9 23 0.00079 26.1 5.5 26 57-82 79-104 (108)
23 1wr1_B Ubiquitin-like protein 56.0 14 0.00048 23.9 3.8 38 36-82 18-55 (58)
24 2knz_A Ubiquilin-4; cytoplasm, 55.6 14 0.00046 23.4 3.6 26 57-82 24-49 (53)
25 1v92_A NSFL1 cofactor P47; 3-h 54.9 11 0.00039 22.7 3.1 37 35-80 5-41 (46)
26 1y8m_A FIS1; mitochondria, unk 49.9 85 0.0029 24.3 8.0 71 12-85 13-105 (144)
27 1vej_A Riken cDNA 4931431F19; 48.1 18 0.00062 24.7 3.5 37 36-81 30-66 (74)
28 1ify_A HHR23A, UV excision rep 47.8 20 0.00068 22.1 3.4 26 57-82 20-45 (49)
29 2jy5_A Ubiquilin-1; UBA, alter 47.8 19 0.00063 22.6 3.3 25 57-81 25-49 (52)
30 3o48_A Mitochondria fission 1 45.4 45 0.0015 25.5 5.7 80 1-83 2-104 (134)
31 1oai_A Nuclear RNA export fact 42.6 66 0.0022 20.7 6.3 43 34-85 6-48 (59)
32 1wji_A Tudor domain containing 41.6 34 0.0012 22.4 4.0 27 57-83 21-47 (63)
33 2g3q_A Protein YBL047C; endocy 40.5 28 0.00094 20.6 3.1 25 57-81 16-40 (43)
34 2dzl_A Protein FAM100B; UBA-li 38.3 32 0.0011 22.7 3.5 24 57-80 30-53 (66)
35 2cp8_A NEXT to BRCA1 gene 1 pr 38.2 51 0.0017 21.0 4.2 27 56-82 21-47 (54)
36 3e3v_A Regulatory protein RECX 37.3 54 0.0018 26.1 5.4 68 14-83 96-163 (177)
37 2jp7_A MRNA export factor MEX6 37.1 81 0.0028 20.2 5.4 40 34-82 5-44 (57)
38 2cp9_A EF-TS, EF-TSMT, elongat 36.8 73 0.0025 20.9 5.0 40 35-83 9-48 (64)
39 2d9s_A CBL E3 ubiquitin protei 35.7 56 0.0019 20.7 4.0 27 57-83 21-47 (53)
40 2ooa_A E3 ubiquitin-protein li 35.7 57 0.002 20.5 4.0 27 57-83 23-49 (52)
41 1vg5_A RSGI RUH-014, rhomboid 35.0 33 0.0011 23.3 3.1 25 57-81 41-65 (73)
42 1veg_A NEDD8 ultimate buster-1 34.7 48 0.0017 23.1 4.0 27 57-83 41-67 (83)
43 2oo3_A Protein involved in cat 33.8 20 0.0007 31.1 2.4 33 200-232 233-265 (283)
44 1sbo_A Putative anti-sigma fac 30.8 88 0.003 21.7 5.2 50 168-223 46-95 (110)
45 2dak_A Ubiquitin carboxyl-term 30.0 66 0.0023 20.8 3.9 26 58-83 22-47 (63)
46 2kln_A Probable sulphate-trans 29.3 1.1E+02 0.0036 22.4 5.6 50 167-222 49-98 (130)
47 2ka5_A Putative anti-sigma fac 28.0 99 0.0034 22.5 5.2 51 167-223 53-103 (125)
48 1wiv_A UBP14, ubiquitin-specif 27.8 55 0.0019 22.0 3.3 26 57-82 41-66 (73)
49 2q3l_A Uncharacterized protein 26.9 1.9E+02 0.0064 21.2 7.6 81 140-230 30-111 (126)
50 3t6o_A Sulfate transporter/ant 25.5 1.1E+02 0.0036 22.1 4.9 52 166-223 48-100 (121)
51 4dgh_A Sulfate permease family 25.4 1.4E+02 0.0048 21.7 5.7 51 167-223 50-100 (130)
52 3llo_A Prestin; STAS domain, c 25.1 1.3E+02 0.0046 22.2 5.6 51 167-223 65-115 (143)
53 3p0c_A Nischarin; structural g 24.8 82 0.0028 23.5 4.2 40 31-74 90-129 (130)
54 1wgn_A UBAP1, ubiquitin associ 22.5 1.1E+02 0.0037 20.0 3.7 40 31-80 15-54 (63)
55 3ny7_A YCHM protein, sulfate t 22.5 1.6E+02 0.0054 21.2 5.3 50 167-223 47-96 (118)
56 4dgf_A Sulfate transporter sul 21.5 1.6E+02 0.0056 21.6 5.4 52 166-223 52-103 (135)
57 1v31_A Hypothetical protein RA 21.4 57 0.002 23.0 2.5 36 11-50 9-44 (93)
No 1
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=6.1e-59 Score=424.93 Aligned_cols=257 Identities=25% Similarity=0.333 Sum_probs=211.6
Q ss_pred CCCCCCccCcccCCCCHHHHHHHHHHcCCChhHHHHHHHHHHHHHHhCCCCCC----------CCCCHHHHHHHHhhcCC
Q psy8727 2 TKDRKPEELSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQT----------CRLDARFLLRFLRSKKF 71 (300)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~el~e~~e~~~~~l~~Lr~~l~~~p~l~~----------~~~dd~~llRFLra~~~ 71 (300)
|-+|+|..|+...++|+++++.|++||+|+++.++++|++||+|++++||+++ ++.||.+|+||||||+|
T Consensus 25 ~~~~~~~~~~~~~~l~~~~~~~a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkf 104 (316)
T 3hx3_A 25 TTKDHGPVFGPCSQLPRHTLQKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKF 104 (316)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTT
T ss_pred hhccCCccccCCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCHHHHHHHHHHcCC
Confidence 56899999985559999999999999999999999999999999999999741 46899999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccccccccCCCCCHHHHHHHHcCceeeCCCCCCCCCEEEEEecCCCCCCCCCHHHHHHHHHH
Q psy8727 72 SVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGM 151 (300)
Q Consensus 72 dv~~A~~~l~~~~~~R~~~~d~~~~~~~~~~~~~~~~l~~g~~~~l~g~Dk~GrpV~~~~~~~~~~~~~~~~~~~r~~~~ 151 (300)
|+++|.++|++|++||+.++ ++|.+.++ ++++..++.|++++++|+|++||||+++++|++|+++++.++++|++++
T Consensus 105 dv~kA~~~L~~~l~wR~~~~-~~~~~~~~--~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~ 181 (316)
T 3hx3_A 105 NVGRAYELLRGYVNFRLQYP-ELFDSLSP--EAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCF 181 (316)
T ss_dssp CHHHHHHHHHHHHHHHHHCG-GGTTTCCH--HHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCc-hhhcCCCH--HHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999 88877654 4678889999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCceeccEEEEEeCCCCCcccccCCCHHHHHHHHHHhhcccCceeceEEEEeCChHHHHHHHHHhhhcCHhh
Q psy8727 152 TYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKI 231 (300)
Q Consensus 152 ~le~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~likpfl~~~t 231 (300)
++|.++.+++.++.|+++|+|++|+|++|+++++++.+|+++.++|++||+|++++||||+|++|+++|+++||||+++|
T Consensus 182 ~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt 261 (316)
T 3hx3_A 182 ILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKL 261 (316)
T ss_dssp HHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHH
T ss_pred HHHHHHhcccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHh
Confidence 99999877677899999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred hcceEEe-cccccc--ccchh-h-hcCCCCCchhH
Q psy8727 232 RKRIKVS-VIVNAR--FLLRF-L-RSKKFSVPMAE 261 (300)
Q Consensus 232 ~~Ki~~~-~~~~~L--~i~~~-~-~eyGG~~~~~~ 261 (300)
++||+|| +++++| +||++ + ++|||+++..+
T Consensus 262 ~~KI~~~~~~~~~L~~~I~~~~LP~eyGG~~~~~d 296 (316)
T 3hx3_A 262 LERVFVHGDDLSGFYQEIDENILPSDFGGTLPKYD 296 (316)
T ss_dssp HTTEEEEETCCHHHHHHSCGGGSBGGGTSSBCCCC
T ss_pred hhheEEeCCCHHHHHhhCCHhhCcHhhCCCCCCcC
Confidence 9999999 568888 99999 5 99999998554
No 2
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=9.1e-52 Score=367.80 Aligned_cols=241 Identities=24% Similarity=0.302 Sum_probs=214.6
Q ss_pred ChhHHHHHHHHHHHHHHhCC--CCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhccccccccCCCCCHHHHHH
Q psy8727 31 DESTREDALIQLRQWITKNS--RIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQEL 108 (300)
Q Consensus 31 ~~e~~~~~l~~Lr~~l~~~p--~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~~~~~R~~~~d~~~~~~~~~~~~~~~~ 108 (300)
.++.++++|++||+|+++++ +++. ..||.+|+|||||++||+++|.++|+++++||+.++ +++.+.++. ++.+.
T Consensus 4 ls~~~~~~l~~lr~~l~~~~~~~~~~-~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~-~i~~~~~~~--~~~~~ 79 (262)
T 1r5l_A 4 MSPLLQPGLAALRRRAREAGVPLAPL-PLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECP-EISADLHPR--SIIGL 79 (262)
T ss_dssp -----CTTHHHHHHHHHHHTCCCSSS-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCH-HHHSCCCGG--GTHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCcccCCC-CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCh-HhhhcCChH--HHHHH
Confidence 44566789999999999875 4444 689999999999999999999999999999999998 887766653 47788
Q ss_pred HHcCceeeCCCCCCCCCEEEEEecCCCCCCCCCHHHHHHHHHHHHHHhhcccCceeccEEEEEeCCCCCcccccCCCHHH
Q psy8727 109 LKLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKE 188 (300)
Q Consensus 109 l~~g~~~~l~g~Dk~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~le~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~ 188 (300)
++.|++.+++|+|++||||+++++|+++++.++..+++|+.++++|.++.+++.++.|+++|+|++|+|++|+++++++.
T Consensus 80 ~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~ 159 (262)
T 1r5l_A 80 LKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSV 159 (262)
T ss_dssp HHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHH
T ss_pred HHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhccCHHH
Confidence 89999999999999999999999999999999999999999999999887666678999999999999999998889999
Q ss_pred HHHHHHHhhcccCceeceEEEEeCChHHHHHHHHHhhhcCHhhhcceEEec-cc-ccc--ccchh-h-hcCCCCCchhHH
Q psy8727 189 AVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSV-IV-NAR--FLLRF-L-RSKKFSVPMAEE 262 (300)
Q Consensus 189 ~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~likpfl~~~t~~Ki~~~~-~~-~~L--~i~~~-~-~eyGG~~~~~~~ 262 (300)
+|.+++++|++||+|++++||||+|++|+++|+++||||+++|++||+|++ ++ ++| +|| + + ++|||+++..++
T Consensus 160 ~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~~yGG~~~~~~~ 238 (262)
T 1r5l_A 160 AKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLEYGGEEFSMED 238 (262)
T ss_dssp HHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCGGGTCSSCCHHH
T ss_pred HHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcHhhCCCCCCHHH
Confidence 999999999999999999999999999999999999999999999999994 44 677 999 8 5 999999998888
Q ss_pred HHHHHHHHHHhchh
Q psy8727 263 ALERYILLRNTYGD 276 (300)
Q Consensus 263 ~~~~~~~~~~~~~~ 276 (300)
..+.|.+....+.+
T Consensus 239 ~~~~w~~~l~~~~~ 252 (262)
T 1r5l_A 239 ICQEWTNFIMKSED 252 (262)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777666554
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=1.2e-47 Score=347.45 Aligned_cols=241 Identities=22% Similarity=0.210 Sum_probs=201.9
Q ss_pred ccCCCCHHHHHHHHHHcCCChhHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcc
Q psy8727 12 VETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYG 91 (300)
Q Consensus 12 ~~~~~~~~~~~~~~~el~e~~e~~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~~~~~R~~~~ 91 (300)
|....+|+. ....+++.++.++++|++||+|++++|+ +. ..||.+|+|||||++||+++|.++|+++++||+.++
T Consensus 10 ~~~~~~~~~---~~~~~~~l~~~q~~~l~~lr~~l~~~~~-~~-~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~ 84 (296)
T 1aua_A 10 YPQNCPPDA---LPGTPGNLDSAQEKALAELRKLLEDAGF-IE-RLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYG 84 (296)
T ss_dssp SCCCCCTTS---CTTSTTTCCTTHHHHHHHHHHHHHHTTC-CS-SCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCccc---CCCCCCCCCHHHHHHHHHHHHHHHhcCC-CC-CCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC
Confidence 444444442 2344567788889999999999999984 33 689999999999999999999999999999999996
Q ss_pred -ccccccCCCCCHHHHHHHHcCceeeCCCCCCCCCEEEEEecCCCCCCC----CCHHHHHHHHHHHHHHhhcc-------
Q psy8727 92 -DLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPGVFNPHK----YTNSHMLQIHGMTYETLMED------- 159 (300)
Q Consensus 92 -d~~~~~~~~~~~~~~~~l~~g~~~~l~g~Dk~GrpV~~~~~~~~~~~~----~~~~~~~r~~~~~le~~~~~------- 159 (300)
++++.+.++.. ...+...+...++|+|++||||+++++|++|+++ .+.+++++++++.+|.+++.
T Consensus 85 ~~~i~~~~~~~~---~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~ 161 (296)
T 1aua_A 85 TDTILQDFHYDE---KPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSR 161 (296)
T ss_dssp GGGHHHHCCCTT---HHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred cchhhhccccCc---HHHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68887766532 2233444444567999999999999999998754 58999999999999987532
Q ss_pred -cCceeccEEEEEeCCCCCcccccCCCHHHHHHHHHHhhcccCceeceEEEEeCChHHHHHHHHHhhhcCHhhhcceEEe
Q psy8727 160 -EENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVS 238 (300)
Q Consensus 160 -~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~likpfl~~~t~~Ki~~~ 238 (300)
.+.++.|+++|+|++|+|++|++++ ++++|.++.++|++||+|++++||||+|++|+++|+++||||+++|++||+|+
T Consensus 162 ~~g~~v~~~~~I~D~~g~s~~~~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~ 240 (296)
T 1aua_A 162 AAGHLVETSCTIMDLKGISISSAYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFIL 240 (296)
T ss_dssp HHTSCCCCEEEEEECTTCCHHHHHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEEC
T ss_pred hcCCCceeEEEEEECCCCCHHHHHHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEe
Confidence 2345789999999999999998765 78999999999999999999999999999999999999999999999999999
Q ss_pred c-cc-ccc--ccchh-h-hcCCCCCchhH
Q psy8727 239 V-IV-NAR--FLLRF-L-RSKKFSVPMAE 261 (300)
Q Consensus 239 ~-~~-~~L--~i~~~-~-~eyGG~~~~~~ 261 (300)
+ ++ ++| +||++ + ++|||++++..
T Consensus 241 ~~~~~~~L~~~i~~~~LP~~yGG~~~~~~ 269 (296)
T 1aua_A 241 GSSYQKELLKQIPAENLPVKFGGKSEVDE 269 (296)
T ss_dssp CSCCHHHHTTTSCSSSSBGGGTSCBCCCG
T ss_pred CcccHHHHHhhCCHhhCcHHhCCCCCCCC
Confidence 4 43 557 99999 5 99999997764
No 4
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=6.8e-47 Score=345.56 Aligned_cols=250 Identities=19% Similarity=0.177 Sum_probs=206.9
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcc-ccccccCCCCCH
Q psy8727 25 KAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYG-DLAFSKLDPKNP 103 (300)
Q Consensus 25 ~~el~e~~e~~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~~~~~R~~~~-d~~~~~~~~~~~ 103 (300)
...+|..++.++++|++||+|++++|+. . +.||.+|+|||||++||+++|.++|+++++||+.++ |+++.+.++..+
T Consensus 29 ~g~~~~lt~~q~~~l~~lR~~l~~~~~~-~-~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~ 106 (320)
T 3q8g_A 29 PGTPGNLTKEQEEALLQFRSILLEKNYK-E-RLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKE 106 (320)
T ss_dssp TTSTTCCCHHHHHHHHHHHHHHHHTTCC-S-SCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcCCC-C-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccc
Confidence 3456788888999999999999999854 3 689999999999999999999999999999999998 777765443210
Q ss_pred --H-HHHHHHcCceeeCCCCCCCCCEEEEEecCCCCCCC----CCHHHHHHHHHHHHHHhhcc--------cCceeccEE
Q psy8727 104 --T-MQELLKLGYLFATPKRDKLGRRVIIARPGVFNPHK----YTNSHMLQIHGMTYETLMED--------EENQVRGFV 168 (300)
Q Consensus 104 --~-~~~~l~~g~~~~l~g~Dk~GrpV~~~~~~~~~~~~----~~~~~~~r~~~~~le~~~~~--------~~~~~~g~v 168 (300)
+ -...+...+..+++|+|++||||+++++|++|+++ .+.++++|++++.+|.+++. .+..+.+++
T Consensus 107 ~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~ 186 (320)
T 3q8g_A 107 AEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSC 186 (320)
T ss_dssp HHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEE
T ss_pred cchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeE
Confidence 0 12234444556677999999999999999999875 37899999999999987521 122467789
Q ss_pred EEEeCCCCCcccccCCCHHHHHHHHHHhhcccCceeceEEEEeCChHHHHHHHHHhhhcCHhhhcceEEec-c-cccc--
Q psy8727 169 HFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSV-I-VNAR-- 244 (300)
Q Consensus 169 ~IiD~~g~s~~~~~~~~~~~~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~likpfl~~~t~~Ki~~~~-~-~~~L-- 244 (300)
+|+|++|+|++|++++ ++++|.++.++|++||+|++++||||+|++|+++|+++||||+++|++||+|++ + .++|
T Consensus 187 ~IiD~~g~sl~~~~~~-~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~ 265 (320)
T 3q8g_A 187 TVLDLKGISLSNAYHV-LSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLK 265 (320)
T ss_dssp EEEECTTCCHHHHHHT-HHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHH
T ss_pred EEEECCCCCHHHHHHH-HHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHh
Confidence 9999999999998765 789999999999999999999999999999999999999999999999999994 4 3677
Q ss_pred ccchh-h-hcCCCCCchhHHHHHHHHHHHHhchhhhhhcCCCC-Chh
Q psy8727 245 FLLRF-L-RSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPK-NPT 288 (300)
Q Consensus 245 ~i~~~-~-~eyGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 288 (300)
+||++ + ++|||++++.+ .-+++..++.+|| +|.
T Consensus 266 ~i~~~~LP~~yGG~~~~~~-----------~~ggc~~~~~gpw~~~~ 301 (320)
T 3q8g_A 266 QIPIENLPVKYGGTSVLHN-----------PNDKFYYSDIGPWRDPR 301 (320)
T ss_dssp HSCGGGSBGGGTSCBCCSS-----------TTSCGGGBCBSGGGCTT
T ss_pred hCChhhCChhhCCCCCCCC-----------CCCCeecCCCCCCCChh
Confidence 99999 5 99999998863 1145556678887 354
No 5
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=1.5e-45 Score=347.20 Aligned_cols=226 Identities=18% Similarity=0.192 Sum_probs=197.4
Q ss_pred HcCCChhHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcc-ccccccCCCCCHH
Q psy8727 27 ELREDESTREDALIQLRQWITKN-SRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYG-DLAFSKLDPKNPT 104 (300)
Q Consensus 27 el~e~~e~~~~~l~~Lr~~l~~~-p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~~~~~R~~~~-d~~~~~~~~~~~~ 104 (300)
.+++.++.++++|++||+|++++ |+++ ..||.+|+|||||++||+++|.++|+++++||+.++ ++++.. . ..+.
T Consensus 4 ~~~~l~~~q~~~l~~lr~~l~~~~~~l~--~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~-~-~~~~ 79 (403)
T 1olm_A 4 RVGDLSPRQKEALAKFRENVQDVLPALP--NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISW-Q-PPEV 79 (403)
T ss_dssp BTTBCCHHHHHHHHHHHHHHGGGGGGSS--CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGS-C-CCHH
T ss_pred CccCCCHHHHHHHHHHHHHHHhhccCCC--CCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCccccc-C-CHHH
Confidence 36788899999999999999988 4776 489999999999999999999999999999999997 677762 2 2244
Q ss_pred HHHHHHcCceeeCCCCCCCCCEEEEEecCCCCCC----CCCHHHHHHHHHHHHHHhhcccC-------ceeccEEEEEeC
Q psy8727 105 MQELLKLGYLFATPKRDKLGRRVIIARPGVFNPH----KYTNSHMLQIHGMTYETLMEDEE-------NQVRGFVHFNDG 173 (300)
Q Consensus 105 ~~~~l~~g~~~~l~g~Dk~GrpV~~~~~~~~~~~----~~~~~~~~r~~~~~le~~~~~~~-------~~~~g~v~IiD~ 173 (300)
++..+..| ++|+|++||||+++++|++|++ ..+.++++|++++++|.++.... .++.|+++|+|+
T Consensus 80 ~~~~~~~~----~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~ 155 (403)
T 1olm_A 80 IQQYLSGG----MCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDC 155 (403)
T ss_dssp HHHHCCBE----EEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEEC
T ss_pred HHHhCCce----eeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEEC
Confidence 56665544 3599999999999999999987 47999999999999999874322 247899999999
Q ss_pred CCCCcccccCCCHHHHHHHHHHhhcccCceeceEEEEeCChHHHHHHHHHhhhcCHhhhcceEEec-cc-ccc--ccchh
Q psy8727 174 AGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSV-IV-NAR--FLLRF 249 (300)
Q Consensus 174 ~g~s~~~~~~~~~~~~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~likpfl~~~t~~Ki~~~~-~~-~~L--~i~~~ 249 (300)
+|+|++|+++..++.+|.+++++|++||+|++++||||+|++|+++|+++||||+++|++||+|++ ++ ++| +||++
T Consensus 156 ~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~ 235 (403)
T 1olm_A 156 EGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPD 235 (403)
T ss_dssp TTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGG
T ss_pred CCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChh
Confidence 999999988777889999999999999999999999999999999999999999999999999995 44 467 99999
Q ss_pred -h-hcCCCCCchh
Q psy8727 250 -L-RSKKFSVPMA 260 (300)
Q Consensus 250 -~-~eyGG~~~~~ 260 (300)
+ ++|||+++..
T Consensus 236 ~LP~~yGG~~~~~ 248 (403)
T 1olm_A 236 QVPVEYGGTMTDP 248 (403)
T ss_dssp GSBGGGTSSBCCT
T ss_pred hCchhhCCCcCCC
Confidence 5 9999999764
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.13 E-value=1.1e-10 Score=102.64 Aligned_cols=131 Identities=11% Similarity=0.035 Sum_probs=105.1
Q ss_pred HcCceeeCCCCCCCCCEEEEEecCCCCCCCCCHHHHHHHHHHHHHHhhcccCceeccEEEEEeCCCCCcccccCCCHHHH
Q psy8727 110 KLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEA 189 (300)
Q Consensus 110 ~~g~~~~l~g~Dk~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~le~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~ 189 (300)
+.+.++. .|.|++|+||+++.+.+++....+.+.++.+++..++.+. -..+.+|+|++|++..+. .+.+.+
T Consensus 9 ~~~ify~-~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~~------~~~y~lV~d~T~~~~~n~--p~~~wl 79 (256)
T 3pg7_A 9 TLSIFYQ-AGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY------AKPYEIVVDLTHTGPSNR--FKTDFL 79 (256)
T ss_dssp HHTSEEE-EEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT------TSCEEEEEECTTCCGGGC--CCHHHH
T ss_pred HcCCEEE-cCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEECCCCCcccC--CcHHHH
Confidence 3455544 4899999999999999998877787777766665555332 256899999999998764 577899
Q ss_pred HHHHHHhhcccCceeceEEEEeCChHHHHHHHH-HhhhcCHhhhcceEEecccccc--ccchh
Q psy8727 190 VRIVKNGERTLPMRHKEIHIINCHPSVKYALDF-GLNLVSEKIRKRIKVSVIVNAR--FLLRF 249 (300)
Q Consensus 190 k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~l-ikpfl~~~t~~Ki~~~~~~~~L--~i~~~ 249 (300)
+.+.+++-..|...+++++|+|++++|...|+. .++|.+.+..+|++++++.++| +||.+
T Consensus 80 ~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~sl~eL~~~i~~~ 142 (256)
T 3pg7_A 80 SKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKLAEHIEHE 142 (256)
T ss_dssp HHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESSTTGGGGTSCGG
T ss_pred HHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECCHHHHHhhcCHH
Confidence 999999999999999999999999999977665 5667666888999999777776 66654
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.99 E-value=5.3e-10 Score=99.76 Aligned_cols=132 Identities=11% Similarity=-0.017 Sum_probs=102.2
Q ss_pred cCceeeCCCCCCCCCEEEEEecCCCCCCCCCHHHHHHHHHHHHHHhhcccCceeccEEEEEeCCCCCcccccCCCHHHHH
Q psy8727 111 LGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAV 190 (300)
Q Consensus 111 ~g~~~~l~g~Dk~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~le~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k 190 (300)
.+.+++-.|.|++|+||+++.+++++....+.+.++-+++..++... -..+++|+|++|++..+ ..+.+.++
T Consensus 28 ~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~~~~------~~~y~lV~D~T~~~~~n--~p~~~~l~ 99 (290)
T 3peg_A 28 TLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY------AKPYEIVVDLTHTGPSN--RFKTDFLS 99 (290)
T ss_dssp GTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT------TSCEEEEEECTTCCGGG--CCCHHHHG
T ss_pred cCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHHHHhc------CCCeEEEEEcCCCCccC--CChHHHHH
Confidence 33444555899999999999999998887887777666555555332 25799999999999875 35788999
Q ss_pred HHHHHhhcccCceeceEEEEeCChHHHHHH-HHHhhhcCHhhhcceEEecccccc--ccchhh
Q psy8727 191 RIVKNGERTLPMRHKEIHIINCHPSVKYAL-DFGLNLVSEKIRKRIKVSVIVNAR--FLLRFL 250 (300)
Q Consensus 191 ~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w-~likpfl~~~t~~Ki~~~~~~~~L--~i~~~~ 250 (300)
.+.+++...|+..+++++++|+|.+|...+ ...+++.+.+..+|+.++++...| +++.++
T Consensus 100 ~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~~~L~~~i~~~~ 162 (290)
T 3peg_A 100 KWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKLAEHIEHEQ 162 (290)
T ss_dssp GGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSSCC---------
T ss_pred HHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCHHHHHhhCCHHH
Confidence 999999999999999999999999998755 577888888999999998766667 787774
No 8
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=84.69 E-value=1.7 Score=28.46 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy8727 35 REDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALER 82 (300)
Q Consensus 35 ~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~ 82 (300)
.+++++.|++. .| .+|...+..-|+++++|++.|...|.+
T Consensus 9 ~ee~l~~L~em------FP--~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 9 SEEDLKAIQDM------FP--NMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp CHHHHHHHHHH------CS--SSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHH------CC--CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 46677777764 23 368899999999999999999998874
No 9
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=82.80 E-value=3.1 Score=29.12 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=39.4
Q ss_pred HHcCCChh-HHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy8727 26 AELREDES-TREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERY 83 (300)
Q Consensus 26 ~el~e~~e-~~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~~ 83 (300)
-+|++..+ ....+|+++|.-+... ..+..|.+-...++||+++|...+.+-
T Consensus 24 ~~Ls~~d~arL~SCLd~iR~VlGds-------V~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 24 HQLSEIDQARLYSCLDHMREVLGDA-------VPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTTTT-------SCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHccc-------CCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 34555444 3488999999988652 567889999999999999999987653
No 10
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=77.63 E-value=7.8 Score=23.80 Aligned_cols=37 Identities=30% Similarity=0.157 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHH
Q psy8727 36 EDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALE 81 (300)
Q Consensus 36 ~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~ 81 (300)
++.|++|++ +- ..++...++-|+++++|+++|.+.|-
T Consensus 8 ~~~i~~L~~-------MG--F~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 8 EHQLRQLND-------MG--FFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHHHH-------TT--CCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHH-------cC--CCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 556666664 21 24667789999999999999998764
No 11
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.47 E-value=4.5 Score=27.17 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy8727 36 EDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERY 83 (300)
Q Consensus 36 ~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~~ 83 (300)
+++++.|++. .| .+|...+..-|+++++|++.|.+.|.+.
T Consensus 19 ~~~v~~L~~M------FP--~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 19 NQAMDDFKTM------FP--NMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp HHHHHHHHHH------CS--SSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHH------CC--CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 5566777664 23 3688999999999999999999988754
No 12
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=72.65 E-value=16 Score=26.65 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHcCCChhHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy8727 14 TSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALER 82 (300)
Q Consensus 14 ~~~~~~~~~~~~~el~e~~e~~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~ 82 (300)
...+.|....++.-++......++.|+.|.+.. ..+..-...-|..++||+++|...|..
T Consensus 18 ~~aTaeQ~rLAq~i~~~~d~d~eekVk~L~Emt---------G~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 18 PQATAEQIRLAQMISDHNDADFEEKVKQLIDIT---------GKNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp SSSSHHHHHHHHHHHHSCCHHHHHHHHHHHHHT---------CCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHhcCCcccHHHHHHHHHHhh---------CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456778777777777776666677777776531 246788999999999999999998874
No 13
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=71.68 E-value=7.7 Score=24.30 Aligned_cols=27 Identities=11% Similarity=0.023 Sum_probs=23.8
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy8727 57 LDARFLLRFLRSKKFSVPMAEEALERY 83 (300)
Q Consensus 57 ~dd~~llRFLra~~~dv~~A~~~l~~~ 83 (300)
.+...+...|.++++|+++|...|.+-
T Consensus 18 ~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 18 ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 577889999999999999999988753
No 14
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=71.42 E-value=7.9 Score=26.28 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy8727 34 TREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALER 82 (300)
Q Consensus 34 ~~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~ 82 (300)
..++.|.++++.+ | .+.+.++.+.|..++.|+|.+...|-+
T Consensus 12 ~l~s~I~qV~DLf------P--dLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 12 ELDSLISQVKDLL------P--DLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHHHC------C--SSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc------c--cCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 4466777777643 3 378899999999999999999998874
No 15
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.57 E-value=12 Score=24.41 Aligned_cols=40 Identities=13% Similarity=0.056 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHH
Q psy8727 32 ESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEAL 80 (300)
Q Consensus 32 ~e~~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l 80 (300)
++.+++.|+++.... ..++.....||.+++||++.|...+
T Consensus 12 s~~~~e~i~qF~~iT---------g~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 12 SSALKGLIQQFTTIT---------GASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CHHHHHHHHHHHHHT---------CCCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred CccHHHHHHHHHHHh---------CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 345566677776532 2457889999999999999998654
No 16
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=66.60 E-value=13 Score=23.44 Aligned_cols=26 Identities=19% Similarity=0.460 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHhhcCCCHHHHHHHHH
Q psy8727 56 RLDARFLLRFLRSKKFSVPMAEEALE 81 (300)
Q Consensus 56 ~~dd~~llRFLra~~~dv~~A~~~l~ 81 (300)
..+-.||-+.|.+.++|+.+|...|.
T Consensus 23 ~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 23 SDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp CCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred CccccHHHHHHHHccCCHHHHHHHhh
Confidence 35677999999999999999998875
No 17
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=65.28 E-value=11 Score=23.10 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCH-HHHHHHHhhcCCCHHHHHH
Q psy8727 35 REDALIQLRQWITKNSRIQTCRLDA-RFLLRFLRSKKFSVPMAEE 78 (300)
Q Consensus 35 ~~~~l~~Lr~~l~~~p~l~~~~~dd-~~llRFLra~~~dv~~A~~ 78 (300)
+++.|++|.+... .+| .....||-+++||++.|..
T Consensus 5 ~de~ia~F~~iTG---------~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 5 REMILADFQACTG---------IENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp HHHHHHHHHHHHC---------CCCHHHHHHHHHHTTTCHHHHHT
T ss_pred HHHHHHHHHHHHC---------CCCHHHHHHHHHHcCCcHHHHHH
Confidence 4667777776432 344 7799999999999999975
No 18
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.49 E-value=19 Score=24.00 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHH
Q psy8727 32 ESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEAL 80 (300)
Q Consensus 32 ~e~~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l 80 (300)
+..+++.|++|..... + .+......||..++||++.|...+
T Consensus 15 s~~~~e~i~qF~~ITg----~----~d~~~A~~~Le~~~WnLe~Av~~f 55 (67)
T 2dam_A 15 TQEQTEKLLQFQDLTG----I----ESMDQCRHTLEQHNWNIEAAVQDR 55 (67)
T ss_dssp CHHHHHHHHHHHHHHC----C----SCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHhC----C----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3445667777776553 1 356789999999999999998754
No 19
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=61.10 E-value=9.8 Score=22.08 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=19.7
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHH
Q psy8727 57 LDARFLLRFLRSKKFSVPMAEEAL 80 (300)
Q Consensus 57 ~dd~~llRFLra~~~dv~~A~~~l 80 (300)
.+.....+.|+++++|++.|...|
T Consensus 16 f~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 16 FDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 355677899999999999998754
No 20
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=58.21 E-value=14 Score=24.78 Aligned_cols=38 Identities=13% Similarity=-0.023 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy8727 36 EDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALER 82 (300)
Q Consensus 36 ~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~ 82 (300)
++.|++|++. - ..++...++-|+++++|+++|.+.|..
T Consensus 20 ~~ql~qL~~M-------G--F~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 20 SKEMECLQAM-------G--FVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHHHHHHHH-------T--CCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-------C--CCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5566666642 1 356777799999999999999997764
No 21
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=57.09 E-value=14 Score=23.43 Aligned_cols=39 Identities=28% Similarity=0.146 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy8727 36 EDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERY 83 (300)
Q Consensus 36 ~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~~ 83 (300)
++.|++|++. - ..++.-.++-|+++++|+++|.+.|...
T Consensus 10 ~~~l~~L~~M-------G--F~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 10 QVQLEQLRSM-------G--FLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHH-------T--CCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHc-------C--CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4566666653 1 2456667999999999999999988653
No 22
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=56.90 E-value=23 Score=26.06 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=22.7
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy8727 57 LDARFLLRFLRSKKFSVPMAEEALER 82 (300)
Q Consensus 57 ~dd~~llRFLra~~~dv~~A~~~l~~ 82 (300)
.|+...++-|+++++|+++|.+.|.+
T Consensus 79 ~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 79 QDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 46678999999999999999998864
No 23
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=56.05 E-value=14 Score=23.93 Aligned_cols=38 Identities=29% Similarity=0.125 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy8727 36 EDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALER 82 (300)
Q Consensus 36 ~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~ 82 (300)
++.|++|++. - ..|+...++-|+++++|+++|.+.|..
T Consensus 18 ~~qi~~L~~M-------G--F~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDM-------G--FFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHH-------T--CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-------C--CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5566666652 1 246777899999999999999998764
No 24
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=55.60 E-value=14 Score=23.37 Aligned_cols=26 Identities=19% Similarity=0.055 Sum_probs=22.7
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy8727 57 LDARFLLRFLRSKKFSVPMAEEALER 82 (300)
Q Consensus 57 ~dd~~llRFLra~~~dv~~A~~~l~~ 82 (300)
.++...++-|+++++|+++|.+.|..
T Consensus 24 ~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 24 INREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 47788999999999999999988764
No 25
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=54.91 E-value=11 Score=22.65 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHH
Q psy8727 35 REDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEAL 80 (300)
Q Consensus 35 ~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l 80 (300)
+++.|.++.+.. . .+......||.+++||++.|...+
T Consensus 5 ~~~~i~~F~~iT-------g--~~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 5 RQDALREFVAVT-------G--AEEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHHHHHT-------C--CCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHh-------C--cCHHHHHHHHHHcCCCHHHHHHHH
Confidence 345566666432 2 467889999999999999998654
No 26
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=49.88 E-value=85 Score=24.25 Aligned_cols=71 Identities=11% Similarity=0.071 Sum_probs=48.5
Q ss_pred ccCCCCHHHHHHHHHHcCCC----------------------hhHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhc
Q psy8727 12 VETSVSKQGLQIAKAELRED----------------------ESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSK 69 (300)
Q Consensus 12 ~~~~~~~~~~~~~~~el~e~----------------------~e~~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~ 69 (300)
-..+++++.++.+++++... ++.+++.|.-|.+.+...|.-. -|-.+.+-.=..+
T Consensus 13 ~~~~l~~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~---RdcLYyLAvg~yk 89 (144)
T 1y8m_A 13 AYEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR---RECLYYLTIGCYK 89 (144)
T ss_dssp GGCCCCHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTH---HHHHHHHHHHHHT
T ss_pred hcCCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccch---hHHHHHHHHHHHH
Confidence 66789999999998887532 2344667777888787765321 2344556666666
Q ss_pred CCCHHHHHHHHHHHHH
Q psy8727 70 KFSVPMAEEALERYIL 85 (300)
Q Consensus 70 ~~dv~~A~~~l~~~~~ 85 (300)
-.|-.+|.+.++..++
T Consensus 90 l~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 90 LGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHh
Confidence 7788888888877655
No 27
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=48.10 E-value=18 Score=24.68 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHH
Q psy8727 36 EDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALE 81 (300)
Q Consensus 36 ~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~ 81 (300)
++.|++|++. - ..++...++-|++.++|+++|.+.|.
T Consensus 30 e~qi~qL~eM-------G--F~dr~~~~~AL~~t~Gnve~Ave~L~ 66 (74)
T 1vej_A 30 QQELEELKAL-------G--FANRDANLQALVATDGDIHAAIEMLL 66 (74)
T ss_dssp HHHHHHHHHH-------T--CCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHc-------C--CCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5567777653 1 24677789999999999999998775
No 28
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=47.80 E-value=20 Score=22.15 Aligned_cols=26 Identities=19% Similarity=0.052 Sum_probs=22.0
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy8727 57 LDARFLLRFLRSKKFSVPMAEEALER 82 (300)
Q Consensus 57 ~dd~~llRFLra~~~dv~~A~~~l~~ 82 (300)
.+.....+-|+++++|+++|.+-|-.
T Consensus 20 F~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 20 YERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp CCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 46778999999999999999987754
No 29
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=47.78 E-value=19 Score=22.63 Aligned_cols=25 Identities=24% Similarity=0.086 Sum_probs=21.6
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHH
Q psy8727 57 LDARFLLRFLRSKKFSVPMAEEALE 81 (300)
Q Consensus 57 ~dd~~llRFLra~~~dv~~A~~~l~ 81 (300)
.++...++-|+++++|+++|.+.|.
T Consensus 25 ~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 25 LNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4778889999999999999998764
No 30
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=45.35 E-value=45 Score=25.50 Aligned_cols=80 Identities=16% Similarity=0.106 Sum_probs=43.8
Q ss_pred CCCCC-CCccCcccCCCCHHHHHHHHHHcCC----------------------ChhHHHHHHHHHHHHHHhCCCCCCCCC
Q psy8727 1 MTKDR-KPEELSVETSVSKQGLQIAKAELRE----------------------DESTREDALIQLRQWITKNSRIQTCRL 57 (300)
Q Consensus 1 ~~~~~-~~~~~~~~~~~~~~~~~~~~~el~e----------------------~~e~~~~~l~~Lr~~l~~~p~l~~~~~ 57 (300)
|+++. -|..-+-..+++++.++.+++++.. .++.+...|.-|.+.++..|.-. -
T Consensus 2 m~~~~~~p~~~~~~~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~---R 78 (134)
T 3o48_A 2 MTKVDFWPTLKDAYEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR---R 78 (134)
T ss_dssp ----CCCCCTTGGGCCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH---H
T ss_pred CCcccccchHHHhcCCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchh---H
Confidence 44444 7877778889999999888887733 12233455666666666553211 1
Q ss_pred CHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy8727 58 DARFLLRFLRSKKFSVPMAEEALERY 83 (300)
Q Consensus 58 dd~~llRFLra~~~dv~~A~~~l~~~ 83 (300)
|-.+.+-.=..+-+|-++|.+.++..
T Consensus 79 d~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 79 ECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22333333344445666666655544
No 31
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=42.61 E-value=66 Score=20.70 Aligned_cols=43 Identities=7% Similarity=0.178 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy8727 34 TREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYIL 85 (300)
Q Consensus 34 ~~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~~~~ 85 (300)
.+++.|.+|.+.- ..+-.+-.++|..++||.++|.+.+.+..+
T Consensus 6 ~q~~mv~~~s~~T---------gmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~ 48 (59)
T 1oai_A 6 EQQEMLQAFSTQS---------GMNLEWSQKCLQDNNWDYTRSAQAFTHLKA 48 (59)
T ss_dssp HHHHHHHHHHHHH---------CCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------CCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4455666665432 256789999999999999999998876543
No 32
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=41.61 E-value=34 Score=22.36 Aligned_cols=27 Identities=11% Similarity=-0.050 Sum_probs=22.0
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy8727 57 LDARFLLRFLRSKKFSVPMAEEALERY 83 (300)
Q Consensus 57 ~dd~~llRFLra~~~dv~~A~~~l~~~ 83 (300)
.+.....+-|+++++|+++|..-|...
T Consensus 21 F~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 21 FSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 456678899999999999999877653
No 33
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=40.52 E-value=28 Score=20.62 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=20.5
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHH
Q psy8727 57 LDARFLLRFLRSKKFSVPMAEEALE 81 (300)
Q Consensus 57 ~dd~~llRFLra~~~dv~~A~~~l~ 81 (300)
.+.....+-|+++++|++.|..-|.
T Consensus 16 F~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 16 FTEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp SCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcCHHHHHHHHH
Confidence 4567788899999999999987664
No 34
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.26 E-value=32 Score=22.74 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=20.8
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHH
Q psy8727 57 LDARFLLRFLRSKKFSVPMAEEAL 80 (300)
Q Consensus 57 ~dd~~llRFLra~~~dv~~A~~~l 80 (300)
.++.....||.+++||++.|...+
T Consensus 30 ~~~~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 30 CAADQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp CCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 467889999999999999998754
No 35
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=38.21 E-value=51 Score=20.96 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy8727 56 RLDARFLLRFLRSKKFSVPMAEEALER 82 (300)
Q Consensus 56 ~~dd~~llRFLra~~~dv~~A~~~l~~ 82 (300)
..|...=.+-|+..++|+++|...|..
T Consensus 21 F~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 21 FCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp CCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 468888999999999999999988764
No 36
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=37.28 E-value=54 Score=26.07 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHcCCChhHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy8727 14 TSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERY 83 (300)
Q Consensus 14 ~~~~~~~~~~~~~el~e~~e~~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~~ 83 (300)
..+++++.+.+-+++.+.+ ..+.+.+-++..+...+..+. .....-+.+||..++|+.+.+...+...
T Consensus 96 KGI~~~~I~~al~~~~~~d-e~e~a~~l~~Kk~~~~~~~~~-~~~~~K~~~~L~rrGF~~~~I~~vl~~l 163 (177)
T 3e3v_A 96 KGIDDNIAEDALILYTDKL-QVEKGVTLAEKLANRYSHDSY-RNKQNKIKQSLLTKGFSYDIIDTIIQEL 163 (177)
T ss_dssp TTCCHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHHTTTSCH-HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhCCchh-HHHHHHHHHHHHHhhccCCCh-HHHHHHHHHHHHHCCCCHHHHHHHHHHC
Confidence 4577777777766653222 223344444444443322211 0112358899999999999888887753
No 37
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=37.06 E-value=81 Score=20.15 Aligned_cols=40 Identities=13% Similarity=0.239 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy8727 34 TREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALER 82 (300)
Q Consensus 34 ~~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~ 82 (300)
.+++.|.+|.+.- ..+-.+-.++|..++||.++|...+..
T Consensus 5 ~q~~mv~~~s~~T---------~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 5 VQLELLNKLHLET---------KLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHHHHHHHH---------CSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3455555555432 256789999999999999999998886
No 38
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=36.83 E-value=73 Score=20.95 Aligned_cols=40 Identities=18% Similarity=0.061 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy8727 35 REDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERY 83 (300)
Q Consensus 35 ~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~~ 83 (300)
..+.|.+||+... ..-.-.-.-|..+++|+++|...|++-
T Consensus 9 t~~~Vk~LRe~TG---------ag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 9 SKELLMKLRRKTG---------YSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp CCHHHHHHHHHHC---------CCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhC---------CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3567888887653 123446788999999999999999854
No 39
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=35.72 E-value=56 Score=20.65 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=23.8
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy8727 57 LDARFLLRFLRSKKFSVPMAEEALERY 83 (300)
Q Consensus 57 ~dd~~llRFLra~~~dv~~A~~~l~~~ 83 (300)
.+..-..+-|...++|++.|...|+++
T Consensus 21 F~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 21 YSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 567789999999999999999999865
No 40
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=35.68 E-value=57 Score=20.53 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=24.1
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy8727 57 LDARFLLRFLRSKKFSVPMAEEALERY 83 (300)
Q Consensus 57 ~dd~~llRFLra~~~dv~~A~~~l~~~ 83 (300)
-+..-.++-|+..++|++-|...|.++
T Consensus 23 Fsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 23 YAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 577889999999999999999988875
No 41
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=35.04 E-value=33 Score=23.25 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=21.0
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHH
Q psy8727 57 LDARFLLRFLRSKKFSVPMAEEALE 81 (300)
Q Consensus 57 ~dd~~llRFLra~~~dv~~A~~~l~ 81 (300)
.+.....+-|+++++|+++|.+.|.
T Consensus 41 F~r~~a~~AL~~~~~nve~Ave~Ll 65 (73)
T 1vg5_A 41 FDRTQVEVALAAADDDLTVAVEILM 65 (73)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4677888999999999999988665
No 42
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.71 E-value=48 Score=23.06 Aligned_cols=27 Identities=22% Similarity=0.133 Sum_probs=22.7
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy8727 57 LDARFLLRFLRSKKFSVPMAEEALERY 83 (300)
Q Consensus 57 ~dd~~llRFLra~~~dv~~A~~~l~~~ 83 (300)
.+.....+-|+++++|+++|.+-|-.+
T Consensus 41 F~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 41 FDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 467789999999999999998877654
No 43
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=33.77 E-value=20 Score=31.11 Aligned_cols=33 Identities=15% Similarity=0.086 Sum_probs=27.2
Q ss_pred cCceeceEEEEeCChHHHHHHHHHhhhcCHhhh
Q psy8727 200 LPMRHKEIHIINCHPSVKYALDFGLNLVSEKIR 232 (300)
Q Consensus 200 yP~rl~~i~ivN~P~~f~~~w~likpfl~~~t~ 232 (300)
....=.+++|||+||-+....+-+-|+|.+...
T Consensus 233 ~gm~gsGm~viNpP~~l~~~~~~~l~~l~~~l~ 265 (283)
T 2oo3_A 233 EGMTGCGLWIINPPYTFPSEIKLVLETLTTYFN 265 (283)
T ss_dssp CSCCEEEEEEESCCTTHHHHHHHHHHHHHHHSS
T ss_pred CCcCceeEEEECCchhHHHHHHHHHHHHHHHhC
Confidence 455557899999999999999988888877554
No 44
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=30.77 E-value=88 Score=21.68 Aligned_cols=50 Identities=16% Similarity=0.068 Sum_probs=32.0
Q ss_pred EEEEeCCCCCcccccCCCHHHHHHHHHHhhcccCceeceEEEEeCChHHHHHHHHH
Q psy8727 168 VHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFG 223 (300)
Q Consensus 168 v~IiD~~g~s~~~~~~~~~~~~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~li 223 (300)
.+|+|+++++.- +.+.+..+..+.+. .-.+=..+.++|++.-+..++.+.
T Consensus 46 ~vvlDls~v~~i-----Dssgl~~L~~~~~~-~~~~g~~l~l~~~~~~v~~~l~~~ 95 (110)
T 1sbo_A 46 KIVLDLSSVSYM-----DSAGLGTLVVILKD-AKINGKEFILSSLKESISRILKLT 95 (110)
T ss_dssp EEEEECTTCCCB-----CHHHHHHHHHHHHH-HHHTTCEEEEESCCHHHHHHHHHT
T ss_pred EEEEECCCCcEE-----ccHHHHHHHHHHHH-HHHcCCEEEEEeCCHHHHHHHHHh
Confidence 579999999873 34444444444332 223446788999998777776654
No 45
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.02 E-value=66 Score=20.78 Aligned_cols=26 Identities=19% Similarity=0.075 Sum_probs=21.5
Q ss_pred CHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy8727 58 DARFLLRFLRSKKFSVPMAEEALERY 83 (300)
Q Consensus 58 dd~~llRFLra~~~dv~~A~~~l~~~ 83 (300)
+.....+-|+++++|+++|..-|..+
T Consensus 22 ~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 22 SRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp CHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 45778889999999999998877764
No 46
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=29.27 E-value=1.1e+02 Score=22.39 Aligned_cols=50 Identities=6% Similarity=-0.112 Sum_probs=34.3
Q ss_pred EEEEEeCCCCCcccccCCCHHHHHHHHHHhhcccCceeceEEEEeCChHHHHHHHH
Q psy8727 167 FVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDF 222 (300)
Q Consensus 167 ~v~IiD~~g~s~~~~~~~~~~~~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~l 222 (300)
-.+|+||++++.-+ ......+..+.+.++ .+=..+.++|++.-+.-++..
T Consensus 49 ~~vvlDls~v~~iD--ssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~ 98 (130)
T 2kln_A 49 EWFVLNAESNVEVD--LTALDALDQLRTELL----RRGIVFAMARVKQDLRESLRA 98 (130)
T ss_dssp EEEEEECSCCSSSB--CSTTTHHHHHHHHHH----TTTEEEEEECCSSHHHHHHHH
T ss_pred eEEEEECCCCChhh--HHHHHHHHHHHHHHH----HCCCEEEEEcCCHHHHHHHHH
Confidence 47899999999744 345566666666555 344567888988766666554
No 47
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=28.04 E-value=99 Score=22.49 Aligned_cols=51 Identities=12% Similarity=-0.084 Sum_probs=33.3
Q ss_pred EEEEEeCCCCCcccccCCCHHHHHHHHHHhhcccCceeceEEEEeCChHHHHHHHHH
Q psy8727 167 FVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFG 223 (300)
Q Consensus 167 ~v~IiD~~g~s~~~~~~~~~~~~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~li 223 (300)
-.+|+|+++++.- +.+.+..+..+.+.. -.+=..+.++|++.-+..++.+.
T Consensus 53 ~~vvlDls~V~~i-----DSsGl~~L~~~~~~~-~~~g~~l~l~~~~~~v~~~l~~~ 103 (125)
T 2ka5_A 53 NKIFLVLSDVESI-----DSFSLGVIVNILKSI-SSSGGFFALVSPNEKVERVLSLT 103 (125)
T ss_dssp CEEEEECTTCSCC-----CHHHHHHHHHHHHHH-HHHTCEEEEECCCHHHHHHHHHT
T ss_pred CEEEEECCCCCEE-----cHHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHc
Confidence 3689999999973 344444444443322 23446789999998877777654
No 48
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=27.77 E-value=55 Score=22.04 Aligned_cols=26 Identities=8% Similarity=0.020 Sum_probs=20.8
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy8727 57 LDARFLLRFLRSKKFSVPMAEEALER 82 (300)
Q Consensus 57 ~dd~~llRFLra~~~dv~~A~~~l~~ 82 (300)
.+.....+-|+++++|+++|..-|-.
T Consensus 41 F~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 41 FAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 35677889999999999999886653
No 49
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=26.93 E-value=1.9e+02 Score=21.23 Aligned_cols=81 Identities=14% Similarity=0.120 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHHhhcccCc-eeccEEEEEeCCCCCcccccCCCHHHHHHHHHHhhcccCceeceEEEEeCChHHHH
Q psy8727 140 YTNSHMLQIHGMTYETLMEDEEN-QVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKY 218 (300)
Q Consensus 140 ~~~~~~~r~~~~~le~~~~~~~~-~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~ 218 (300)
++.+|+-. +.-.++..+...+. .++-++.+-|+.|+++.-++ .=+..-..+ -..+.++-||-.+.+...
T Consensus 30 lt~~d~~~-l~~~l~~~l~~~~~~~i~ll~~~~~f~G~~~~a~~--------~d~k~~~~h-~~~~~RiAvV~d~~W~~~ 99 (126)
T 2q3l_A 30 LTHEDYEQ-MTPLLESALAGIKTPEIVALIDITELDGLSLHAAW--------DDLKLGLKH-GKEFKRVAIIGQGELQEW 99 (126)
T ss_dssp ECHHHHHH-HHHHHHHHTTTCCSSCEEEEEEEEEEEEECHHHHH--------HHHHHHHHH-GGGEEEEEEECCSHHHHH
T ss_pred ECHHHHHH-HHHHHHHHHHhCCCceEEEEEEecCCCCCCHHHHH--------HHHHhhhhH-HhcCCEEEEEcChHHHHH
Confidence 36677766 55566666643221 14444444556666654332 212221233 377899999999999999
Q ss_pred HHHHHhhhcCHh
Q psy8727 219 ALDFGLNLVSEK 230 (300)
Q Consensus 219 ~w~likpfl~~~ 230 (300)
+-++.++|++.+
T Consensus 100 ~~~~~~~~~~~e 111 (126)
T 2q3l_A 100 ATRVANWFTPGE 111 (126)
T ss_dssp HHHHHHHHCSSE
T ss_pred HHHHHhhccCCc
Confidence 999999998764
No 50
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=25.53 E-value=1.1e+02 Score=22.08 Aligned_cols=52 Identities=15% Similarity=0.070 Sum_probs=33.9
Q ss_pred cEEEEEeCCCCCcccccCCCHHHHHHHHHHhhcccCc-eeceEEEEeCChHHHHHHHHH
Q psy8727 166 GFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPM-RHKEIHIINCHPSVKYALDFG 223 (300)
Q Consensus 166 g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~lq~~yP~-rl~~i~ivN~P~~f~~~w~li 223 (300)
.-.+|+|++++++- +.+-+..++.+.+.. -. +=+.+.++|++.-+..++.+.
T Consensus 48 ~~~vvlDls~v~~i-----DSsGl~~L~~~~~~~-~~~~g~~l~l~~~~~~v~~~l~~~ 100 (121)
T 3t6o_A 48 PRKVLIDLEGVEFF-----GSSFIELLVRGWKRI-KEDQQGVFALCSVSPYCVEVLQVT 100 (121)
T ss_dssp SCEEEEECTTCCEE-----CHHHHHHHHHHHHHH-TTSTTCEEEEESCCHHHHHHHTTC
T ss_pred CCeEEEECCCCCEE-----cHHHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHHHHh
Confidence 34699999999973 344444444444432 23 556789999988877766543
No 51
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=25.39 E-value=1.4e+02 Score=21.68 Aligned_cols=51 Identities=12% Similarity=-0.024 Sum_probs=32.6
Q ss_pred EEEEEeCCCCCcccccCCCHHHHHHHHHHhhcccCceeceEEEEeCChHHHHHHHHH
Q psy8727 167 FVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFG 223 (300)
Q Consensus 167 ~v~IiD~~g~s~~~~~~~~~~~~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~li 223 (300)
-.+|+|+++++.- +.+-+..+..+.+ .+-.+=..++++|++.-+.-++...
T Consensus 50 ~~vvlDls~v~~i-----Dssgl~~L~~~~~-~~~~~g~~l~l~~~~~~v~~~l~~~ 100 (130)
T 4dgh_A 50 QILILRLKWVPFM-----DITGIQTLEEMIQ-SFHKRGIKVLISGANSRVSQKLVKA 100 (130)
T ss_dssp SEEEEECTTCCCC-----CHHHHHHHHHHHH-HHHTTTCEEEEECCCHHHHHHHHHT
T ss_pred CEEEEECCCCCcc-----cHHHHHHHHHHHH-HHHHCCCEEEEEcCCHHHHHHHHHc
Confidence 4699999999973 3333443333332 2334557889999988777666543
No 52
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=25.09 E-value=1.3e+02 Score=22.16 Aligned_cols=51 Identities=12% Similarity=0.007 Sum_probs=32.5
Q ss_pred EEEEEeCCCCCcccccCCCHHHHHHHHHHhhcccCceeceEEEEeCChHHHHHHHHH
Q psy8727 167 FVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFG 223 (300)
Q Consensus 167 ~v~IiD~~g~s~~~~~~~~~~~~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~li 223 (300)
-.+|+||+++++- +.+-+..+..+.+ .+-.+=..++++|++.-+.-++...
T Consensus 65 ~~vvlDls~v~~i-----Dssgl~~L~~~~~-~~~~~g~~l~l~~~~~~v~~~l~~~ 115 (143)
T 3llo_A 65 HTVILDFTQVNFM-----DSVGVKTLAGIVK-EYGDVGIYVYLAGCSAQVVNDLTSN 115 (143)
T ss_dssp SEEEEECTTCCCC-----CHHHHHHHHHHHH-HHHTTTCEEEEESCCHHHHHHHHHT
T ss_pred eEEEEECCCCccc-----cHHHHHHHHHHHH-HHHHCCCEEEEEeCCHHHHHHHHhC
Confidence 4799999999873 3444444333333 2334567889999887766665543
No 53
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=24.77 E-value=82 Score=23.50 Aligned_cols=40 Identities=20% Similarity=0.110 Sum_probs=29.3
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHH
Q psy8727 31 DESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVP 74 (300)
Q Consensus 31 ~~e~~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~ 74 (300)
.-|.+..+|+.+-+.+.++|.+. .+..+..||...+||+.
T Consensus 90 ~ie~Rr~~Le~yL~~l~~~p~l~----~s~~l~~FL~~~~~~~~ 129 (130)
T 3p0c_A 90 LVEKREKDLEVYLQKLLAAFPGV----TPRVLAHFLHFHFYEIN 129 (130)
T ss_dssp SHHHHHHHHHHHHHHHHHTSCSE----ECHHHHHHHHSCTTC--
T ss_pred HHHHHHHHHHHHHHHHHcChhhh----cCHHHHHHhCCCccccc
Confidence 34567778888777777887663 45779999999999874
No 54
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.55 E-value=1.1e+02 Score=20.03 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=27.9
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHH
Q psy8727 31 DESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEAL 80 (300)
Q Consensus 31 ~~e~~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l 80 (300)
.....+++|+.|-.. -.++....+-|++++.|+++|..=|
T Consensus 15 ls~se~e~V~~LvsM----------GFs~~qA~kALKat~~NvErAaDWL 54 (63)
T 1wgn_A 15 LSPSERQCVETVVNM----------GYSYECVLRAMKKKGENIEQILDYL 54 (63)
T ss_dssp CCHHHHHHHHHHHHH----------HCCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hCcchHHHHHHHHHc----------CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 334445666665531 2466789999999999999998744
No 55
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=22.53 E-value=1.6e+02 Score=21.15 Aligned_cols=50 Identities=10% Similarity=-0.009 Sum_probs=33.8
Q ss_pred EEEEEeCCCCCcccccCCCHHHHHHHHHHhhcccCceeceEEEEeCChHHHHHHHHH
Q psy8727 167 FVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFG 223 (300)
Q Consensus 167 ~v~IiD~~g~s~~~~~~~~~~~~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~li 223 (300)
-.+|+||++++. ++.+-+..+..+.+.. -. =..++++|.+.-+.-++...
T Consensus 47 ~~vilDl~~v~~-----iDssgl~~L~~~~~~~-~~-g~~l~l~~~~~~v~~~l~~~ 96 (118)
T 3ny7_A 47 RIVILKWDAVPV-----LDAGGLDAFQRFVKRL-PE-GCELRVCNVEFQPLRTMARA 96 (118)
T ss_dssp SEEEEEEEECCC-----BCHHHHHHHHHHHHHC-CT-TCEEEEECCCHHHHHHHHHT
T ss_pred cEEEEEcCCCCe-----ecHHHHHHHHHHHHHH-HC-CCEEEEecCCHHHHHHHHHc
Confidence 469999999986 3455555555555533 34 56789999888776666543
No 56
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=21.52 E-value=1.6e+02 Score=21.56 Aligned_cols=52 Identities=12% Similarity=-0.091 Sum_probs=32.7
Q ss_pred cEEEEEeCCCCCcccccCCCHHHHHHHHHHhhcccCceeceEEEEeCChHHHHHHHHH
Q psy8727 166 GFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFG 223 (300)
Q Consensus 166 g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~li 223 (300)
.-.+|+||++++.- +.+-+..+..+.+ .+-.+=..++++|++.-+.-++...
T Consensus 52 ~~~vvlDls~v~~i-----Dssgl~~L~~~~~-~~~~~g~~l~l~~~~~~v~~~l~~~ 103 (135)
T 4dgf_A 52 PKVFILRMRRVPVI-----DATGMHALWEFQE-SCEKRGTILLLSGVSDRLYGALNRF 103 (135)
T ss_dssp CSEEEEECTTCSCB-----CHHHHHHHHHHHH-HHHHHTCEEEEESCCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCcc-----CHHHHHHHHHHHH-HHHHCCCEEEEEcCCHHHHHHHHHc
Confidence 35799999999973 3333333333332 2234567889999888776666543
No 57
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=21.38 E-value=57 Score=23.04 Aligned_cols=36 Identities=11% Similarity=0.208 Sum_probs=29.4
Q ss_pred cccCCCCHHHHHHHHHHcCCChhHHHHHHHHHHHHHHhCC
Q psy8727 11 SVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNS 50 (300)
Q Consensus 11 ~~~~~~~~~~~~~~~~el~e~~e~~~~~l~~Lr~~l~~~p 50 (300)
+....+|+++.+. +|..+.++.+.+..|+++++++.
T Consensus 9 p~~~~lS~~La~~----lG~~~~sr~evvk~lW~YIK~n~ 44 (93)
T 1v31_A 9 PEKFKLSTALMDV----LGIEVETRPRIIAAIWHYVKARK 44 (93)
T ss_dssp CCCEECCHHHHHH----SCCSEECSHHHHHHHHHHHHHTT
T ss_pred CCccccCHHHHHH----HCCCccCHHHHHHHHHHHHHHcc
Confidence 3455688887766 47888899999999999999874
Done!