RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8727
(300 letters)
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein,
11-CIS-retinal, bothnia dystrophy, acetylation,
cytoplasm, disease mutation; HET: RET; 1.69A {Homo
sapiens} PDB: 3hy5_A*
Length = 316
Score = 212 bits (541), Expect = 2e-67
Identities = 61/234 (26%), Positives = 105/234 (44%), Gaps = 13/234 (5%)
Query: 14 TSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRI----------QTCRLDARFLL 63
+ + + LQ AK EL E E TRE+A+ +L++ + + + D+ F L
Sbjct: 37 SQLPRHTLQKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFL 96
Query: 64 RFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKL 123
RF+R++KF+V A E L Y+ R Y +L F L P ++ ++ GY RDK
Sbjct: 97 RFIRARKFNVGRAYELLRGYVNFRLQYPEL-FDSLSP--EAVRCTIEAGYPGVLSSRDKY 153
Query: 124 GRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTL 183
GR V++ + + T +LQ + E L+E+EE Q+ GF + G +
Sbjct: 154 GRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAAS 213
Query: 184 FTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKV 237
+ ++V + + P K IH I+ + + K+ +R+ V
Sbjct: 214 LRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFV 267
Score = 60.1 bits (146), Expect = 1e-10
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 243 ARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYIRV 300
+ F LRF+R++KF+V A E L Y+ R Y +L F L P ++ ++ GY V
Sbjct: 92 SGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPEL-FDSLSP--EAVRCTIEAGYPGV 146
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with
vitamin E deficiency, transport protein; HET: MSE VIV;
1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A*
1oip_A*
Length = 262
Score = 199 bits (509), Expect = 2e-63
Identities = 54/203 (26%), Positives = 92/203 (45%), Gaps = 4/203 (1%)
Query: 36 EDALIQLRQWITK-NSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLA 94
+ L LR+ + + L FLLRFLR++ F + +A L+ Y R ++
Sbjct: 9 QPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEI- 67
Query: 95 FSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYE 154
+ L P ++ LLK GY RD G +V+I R ++P +T + ++ +T E
Sbjct: 68 SADLHP--RSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSE 125
Query: 155 TLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHP 214
++++ E Q G D G F H TP A +I + P++ + IH+IN
Sbjct: 126 LIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPV 185
Query: 215 SVKYALDFGLNLVSEKIRKRIKV 237
++EKI++RI +
Sbjct: 186 IFHAVFSMIKPFLTEKIKERIHM 208
Score = 60.8 bits (148), Expect = 6e-11
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 245 FLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYIRV 300
FLLRFLR++ F + +A L+ Y R ++ + L P ++ LLK GY V
Sbjct: 35 FLLRFLRARDFDLDLAWRLLKNYYKWRAECPEI-SADLHP--RSIIGLLKAGYHGV 87
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
biosynthesis, oxidized vitamin E, lipid-binding,
transport, transcription regulation; HET: VTQ; 1.95A
{Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
1o6u_A* 1olm_E*
Length = 403
Score = 104 bits (261), Expect = 9e-26
Identities = 44/236 (18%), Positives = 83/236 (35%), Gaps = 22/236 (9%)
Query: 27 ELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILL 86
+L + ++AL + R+ + ++ D FLLR+LR++ F + +E L +++
Sbjct: 7 DLSPRQ---KEALAKFRENV-QDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEF 62
Query: 87 RNTYG-DLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPGVFNP----HKYT 141
R D S P E+++ D G V G + +
Sbjct: 63 RKQKDIDNIISWQPP------EVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSAS 116
Query: 142 NSHMLQIHGMTYETLMEDEENQ-------VRGFVHFNDGAGVSFPHLTLFTPKEAVRIVK 194
+L+ E L+++ +Q V D G+ HL + +
Sbjct: 117 KQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLC 176
Query: 195 NGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSVIVNARFLLRFL 250
E P K + ++ A + +SE RK+I V LL+ +
Sbjct: 177 MFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHI 232
Score = 35.7 bits (82), Expect = 0.013
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 229 EKIRKRIKVSVIVNARFLLRFLRSKKFSVPMAEEALERYILLRNTYG 275
E ++ + + FLLR+LR++ F + +E L +++ R
Sbjct: 21 ENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKD 67
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding
protein, peripheral golgi membrane protein, phospholipid
exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae}
SCOP: a.5.3.1 c.13.1.1
Length = 296
Score = 63.6 bits (155), Expect = 7e-12
Identities = 46/169 (27%), Positives = 63/169 (37%), Gaps = 20/169 (11%)
Query: 36 EDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYG-DLA 94
E AL +LR+ + I+ RLD LLRFLR++KF V +A+E E R YG D
Sbjct: 31 EKALAELRKLLEDAGFIE--RLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTI 88
Query: 95 FSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNS----HMLQIHG 150
L+ Y K DK GR V G N H+ ML+
Sbjct: 89 LQDFHYDEK---PLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLV 145
Query: 151 MTYETLM--------EDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVR 191
YE+++ + V D G+S + VR
Sbjct: 146 WEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAY--SVMSYVR 192
Score = 31.6 bits (72), Expect = 0.24
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 245 FLLRFLRSKKFSVPMAEEALERYILLRNTYG--DLAFSKLDPKNPTMQELLKLGYIRV 300
LLRFLR++KF V +A+E E R YG + + P + + Y +
Sbjct: 54 TLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKT 111
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif,
signaling protein, directed evoluti SEC14, phospholipid
transporter, lipid; HET: PEE; 1.80A {Saccharomyces
cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Length = 320
Score = 61.8 bits (150), Expect = 4e-11
Identities = 48/260 (18%), Positives = 85/260 (32%), Gaps = 39/260 (15%)
Query: 1 MTKDRKPEELSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDAR 60
MT + + + G L +++ E+AL+Q R + + + RLD
Sbjct: 11 MTTSILDTYPQICSPNALPGT---PGNLTKEQ---EEALLQFRSILLEKN--YKERLDDS 62
Query: 61 FLLRFLRSKKFSVPMAEEALERYILLRNTYG--------DLAFSKLDPKNPTMQELLKLG 112
LLRFLR++KF + + E R YG + D + + ++
Sbjct: 63 TLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQY 122
Query: 113 YLFATPKRDKLGRRVIIARPGVFNP----HKYTNSHMLQIHGMTYETLM--------EDE 160
Y DK GR + A G N T ML+ YE
Sbjct: 123 YH----HVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRA 178
Query: 161 ENQVRGFVHFNDGAGVSFPHLTLFTPKEAVR-IVKNGERTLPMRHKEIHIINCHPSVKYA 219
+ D G+S + ++ + + P R + +II+ P
Sbjct: 179 GYLIETSCTVLDLKGISLSNAY--HVLSYIKDVADISQNYYPERMGKFYIIHS-PFGFST 235
Query: 220 LDFGL--NLVSEKIRKRIKV 237
+ F + + +I +
Sbjct: 236 M-FKMVKPFLDPVTVSKIFI 254
Score = 31.7 bits (72), Expect = 0.24
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 245 FLLRFLRSKKFSVPMAEEALERYILLRNTYG 275
LLRFLR++KF + + E R YG
Sbjct: 63 TLLRFLRARKFDINASVEMFVETERWREEYG 93
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.8 bits (147), Expect = 2e-10
Identities = 63/346 (18%), Positives = 100/346 (28%), Gaps = 124/346 (35%)
Query: 8 EEL----SVETSVSKQGLQIAKAELREDESTREDAL------IQLRQWITKNSRIQTCRL 57
EEL + ++ + L E T DA + + +W+ S
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN----TP 226
Query: 58 DARFLLRFLRSKKFSVPM-AEEALERYILLRNTYGDLAFSKLDPKN-------------- 102
D +LL S S P+ L Y++ G P
Sbjct: 227 DKDYLL----SIPISCPLIGVIQLAHYVVTAKLLG------FTPGELRSYLKGATGHSQG 276
Query: 103 ----------PTMQELLK-----LGYLFATPKRDKLGRRVIIARPGVFNPHKYTN----- 142
+ + + LF +G R A P P
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLF------FIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 143 -----SHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRI-VKNG 196
S ML I +T E + ++ V N HL + V I + NG
Sbjct: 331 NEGVPSPMLSISNLTQEQV----QDYVN---KTNS-------HL---PAGKQVEISLVNG 373
Query: 197 ERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIR-------KRIKVSVIVNAR---FL 246
+ L +++ P +L +GLNL K + RI S R F
Sbjct: 374 AKNL--------VVSGPPQ---SL-YGLNLTLRKAKAPSGLDQSRIPFS----ERKLKFS 417
Query: 247 LRFLRSKKFSVP-----MAEEALERYILLRNTYGDLAFSKLDPKNP 287
RFL + P + A + I +++F+ D + P
Sbjct: 418 NRFLPV---ASPFHSHLL-VPASDL-INKDLVKNNVSFNAKDIQIP 458
Score = 37.0 bits (85), Expect = 0.007
Identities = 61/299 (20%), Positives = 90/299 (30%), Gaps = 93/299 (31%)
Query: 7 PEELSVE---TSVSKQGLQIAKAELREDESTREDALIQLRQ------WITKNSRIQ---- 53
P EL + QGL A A D + E + +R+ +I R
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETD--SWESFFVSVRKAITVLFFI--GVRCYEAYP 315
Query: 54 TCRLDARFLLRFLR-SKKFSVPM------AEEALERYILLRNTYGDLAFSKLD------P 100
L L L ++ PM +E ++ Y+ N++ +++
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG-KQVEISLVNGA 374
Query: 101 KN------PTMQEL----LKLGYLFATPKRD----KLGRR--VIIAR--PGVFNP-HKYT 141
KN P Q L L L A D R R P V +P H
Sbjct: 375 KNLVVSGPP--QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP-VASPFH--- 428
Query: 142 NSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGE--RT 199
SH+L + + +D VSF + P V +G R
Sbjct: 429 -SHLLVP---ASDLINKDLVKN-----------NVSFNAKDIQIP---VYDTFDGSDLRV 470
Query: 200 L--PMRHKEIHIINCHP---------SVKYALDFGLNLVS--EKIRKRIK----VSVIV 241
L + + + I P + LDFG S + R K V VIV
Sbjct: 471 LSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIV 529
Score = 30.8 bits (69), Expect = 0.74
Identities = 26/125 (20%), Positives = 38/125 (30%), Gaps = 28/125 (22%)
Query: 147 QIHGM---TYETLMEDEENQV--RGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLP 201
Q GM Y+T V R HF D G S + + P + I GE+
Sbjct: 1627 QEQGMGMDLYKT--SKAAQDVWNRADNHFKDTYGFSILDIVINNPVN-LTIHFGGEKGKR 1683
Query: 202 MRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSVIVNARFLLRFLRSKKFSVPMAE 261
+R + ++ + L +EKI K I S F +
Sbjct: 1684 IREN-------YSAMIFETIVDGKLKTEKIFKEINEH-----------STSYTFRSE--K 1723
Query: 262 EALER 266
L
Sbjct: 1724 GLLSA 1728
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 8e-08
Identities = 60/341 (17%), Positives = 100/341 (29%), Gaps = 88/341 (25%)
Query: 18 KQGLQIAKAELRE--DESTREDALIQLR----QWITKNSRIQTCRL--------DARFLL 63
K + +AELR E+ L+ L + C++ FL
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-CKILLTTRFKQVTDFLS 282
Query: 64 RFLRSKKFSVPMA-----EEALERYILLRNTYGDLAFSKLDPK-----NPTMQELLKLGY 113
+ + +E LL Y D L P+ NP +L
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKS---LLLK-YLDCRPQDL-PREVLTTNP-----RRLS- 331
Query: 114 LFATPKRDKLGRRVIIARPGVFNPHKYTN-SHMLQIHGMTYETLMEDEENQV-RGFVHFN 171
+ A RD L ++ K+ N + I + L E ++ F
Sbjct: 332 IIAESIRDGLAT---------WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 172 DGAGVSFPHLTLF---TPKEAVRIVKNG--ERTLPMRHKEIHIINCHPSVKYALDFGLNL 226
A + L+L K V +V N + +L + + I+ L+ + L
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP---SIYLELKVKL 439
Query: 227 VSEK-IRKRIKVSVIVNARFLLRFLRSKKFSVP--------------MAEEALERYILLR 271
+E + + I V+ + + S P E ER L R
Sbjct: 440 ENEYALHRSI-----VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 272 NTYGDLAF--SKL----------DPKNPTMQELLK-LGYIR 299
+ D F K+ T+Q+L YI
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Score = 40.6 bits (94), Expect = 6e-04
Identities = 50/338 (14%), Positives = 99/338 (29%), Gaps = 87/338 (25%)
Query: 2 TKDRKPEELSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSR---------- 51
T+ R+P ++ + L + +R ++LRQ + +
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 52 --------IQTCRLDARFLLRF------LRSKKFSVPMAE-EALER-YILLRNTYGDLAF 95
+ C + + L K + P E L++ + + +
Sbjct: 160 GSGKTWVALDVCL-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 96 SKLDPKNPTMQELLKLGYLFATPK--------RDKLGRRVIIARPGVFNPH-KYTNSHML 146
+ K +L L + + + A FN K
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA----FNLSCK------- 267
Query: 147 QIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTL-FTPKEAVRI----VKNGERTLP 201
L+ QV F+ +S H ++ TP E + + + LP
Sbjct: 268 --------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 202 MRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSVIVNARF-LLRFLRSKKFS--VP 258
+E+ +P L++++E IR + A + + + K + +
Sbjct: 320 ---REVLTT--NP-------RRLSIIAESIRDGL-------ATWDNWKHVNCDKLTTIIE 360
Query: 259 MAEEALERYILLRNTYGDLA-FSKLDPKNPTMQELLKL 295
+ LE R + L+ F PT LL L
Sbjct: 361 SSLNVLEPA-EYRKMFDRLSVFPP-SAHIPT--ILLSL 394
Score = 39.1 bits (90), Expect = 0.002
Identities = 37/197 (18%), Positives = 59/197 (29%), Gaps = 52/197 (26%)
Query: 8 EELSVETSVSKQGLQIAKAELREDESTRE------DALIQLRQWITKNSRIQTCRLDARF 61
+ + V + K L E + EST + ++L + I +D
Sbjct: 403 DVMVVVNKLHKYSL----VEKQPKESTISIPSIYLELKVKLENEYALHRSI----VDHYN 454
Query: 62 LLRFLRSKKFSVP--------------MAEEALERYILLRNTYGDLAF--SKL------- 98
+ + S P E ER L R + D F K+
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 99 ---DPKNPTMQELLKLGYL-FATPKRDKLGRRVIIARPGVFNP------HKYTNSHMLQI 148
T+Q+L Y + K R V + KYT+ +L+I
Sbjct: 515 NASGSILNTLQQLKF--YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD--LLRI 570
Query: 149 HGMT-YETLMEDEENQV 164
M E + E+ QV
Sbjct: 571 ALMAEDEAIFEEAHKQV 587
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 31.3 bits (71), Expect = 0.40
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 18 KQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAE 77
+ A+ + R T + A+ + R L L++ L+S + S E
Sbjct: 32 RGAATRARQKQRASLETMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGELS---PE 88
Query: 78 EALERYI 84
Y+
Sbjct: 89 AVFFTYL 95
>1xoc_A Oligopeptide-binding protein APPA; oligopeptide, APPA, transport,
transport protein; 1.55A {Bacillus subtilis} SCOP:
c.94.1.1
Length = 520
Score = 30.0 bits (68), Expect = 0.95
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 116 ATPKRDKLGRRVIIAR---PGVFNPHKYTNSHMLQIHGMTYETLME-DEENQV 164
P++ +++ P +FN T+ I M Y L + DE+ V
Sbjct: 16 GKPQQGG---DLVVGSIGEPTLFNSLYSTDDASTDIENMLYSFLTKTDEKLNV 65
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 1.1
Identities = 12/64 (18%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 6 KPEELSVET-SVSK----QGLQIAK---AELREDESTREDALIQLRQWITK-NSRIQTCR 56
+ + L+ E S+ K Q ++ + A ++ RE A L +W + + +++ +
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Query: 57 LDAR 60
++ R
Sbjct: 136 INNR 139
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome,
protease-peptide complex, hydrolase, plant protein;
2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1
d.185.1.1 d.185.1.1
Length = 995
Score = 27.5 bits (60), Expect = 7.7
Identities = 14/56 (25%), Positives = 20/56 (35%)
Query: 113 YLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFV 168
Y A+ V + VF P ++H Q G YE E+ +G V
Sbjct: 119 YPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVV 174
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer
RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia
coli} PDB: 2ykr_B 3fih_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B
3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 3i1m_B
1vs7_B* 3e1a_B 3e1c_B 1vs5_B 3i1o_B 3i1q_B ...
Length = 218
Score = 26.7 bits (60), Expect = 9.6
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 174 AGVSFPHLTLF-TPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKY---ALDFGLNLVSE 229
AGV F H T + PK I G R ++HIIN +V AL + S
Sbjct: 4 AGVHFGHQTRYWNPKMKPFIF--GAR------NKVHIINLEKTVPMFNEALAELNKIASR 55
Query: 230 K 230
K
Sbjct: 56 K 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.393
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,719,881
Number of extensions: 291811
Number of successful extensions: 587
Number of sequences better than 10.0: 1
Number of HSP's gapped: 571
Number of HSP's successfully gapped: 28
Length of query: 300
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 207
Effective length of database: 4,105,140
Effective search space: 849763980
Effective search space used: 849763980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)