RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8727
(300 letters)
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 185
Score = 112 bits (281), Expect = 7e-31
Identities = 36/134 (26%), Positives = 62/134 (46%)
Query: 104 TMQELLKLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQ 163
++ LLK GY RD G +V+I R ++P +T + ++ +T E ++++ E Q
Sbjct: 1 SIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQ 60
Query: 164 VRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFG 223
G D G F H TP A +I + P++ + IH+IN
Sbjct: 61 RNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMI 120
Query: 224 LNLVSEKIRKRIKV 237
++EKI++RI +
Sbjct: 121 KPFLTEKIKERIHM 134
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF),
middle domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 199
Score = 71.3 bits (174), Expect = 2e-15
Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 11/142 (7%)
Query: 107 ELLKLGYLFATPKRDKLGRRVIIARPGVFNP----HKYTNSHMLQIHGMTYETLMEDEEN 162
E+++ D G V G + + +L+ E L+++ +
Sbjct: 3 EVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAH 62
Query: 163 Q-------VRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPS 215
Q V D G+ HL + + E P K + ++
Sbjct: 63 QTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKL 122
Query: 216 VKYALDFGLNLVSEKIRKRIKV 237
A + +SE RK+I V
Sbjct: 123 FPVAYNLIKPFLSEDTRKKIMV 144
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of
phosphatidylinositol transfer protein sec14p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 203
Score = 63.6 bits (154), Expect = 1e-12
Identities = 26/144 (18%), Positives = 43/144 (29%), Gaps = 13/144 (9%)
Query: 119 KRDKLGRRVIIARPGVFNPHKY----TNSHMLQIHGMTYETLM--------EDEENQVRG 166
K DK GR V G N H+ + ML+ YE+++ + V
Sbjct: 17 KTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVET 76
Query: 167 FVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNL 226
D G+S + P R + +IIN A
Sbjct: 77 SCTIMDLKGISISSAYSVM-SYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPF 135
Query: 227 VSEKIRKRIKVSVIVNARFLLRFL 250
+ +I + + LL+ +
Sbjct: 136 LDPVTVSKIFILGSSYQKELLKQI 159
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 55.2 bits (133), Expect = 5e-11
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 36 EDALIQLRQWITKNSRIQT-CRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLA 94
+ L LR+ + L FLLRFLR++ F + +A L+ Y R ++
Sbjct: 1 QPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEI- 59
Query: 95 FSKLDPK 101
+ L P+
Sbjct: 60 SADLHPR 66
Score = 43.6 bits (103), Expect = 6e-07
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 245 FLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPK 285
FLLRFLR++ F + +A L+ Y R ++ + L P+
Sbjct: 27 FLLRFLRARDFDLDLAWRLLKNYYKWRAECPEI-SADLHPR 66
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of
phosphatidylinositol transfer protein sec14p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 93
Score = 55.2 bits (133), Expect = 1e-10
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 35 REDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYG 91
+E AL +LR+ + I+ RLD LLRFLR++KF V +A+E E R YG
Sbjct: 30 QEKALAELRKLLEDAGFIE--RLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYG 84
Score = 39.8 bits (93), Expect = 3e-05
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 245 FLLRFLRSKKFSVPMAEEALERYILLRNTYG 275
LLRFLR++KF V +A+E E R YG
Sbjct: 54 TLLRFLRARKFDVQLAKEMFENCEKWRKDYG 84
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF),
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 50.9 bits (122), Expect = 2e-09
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 35 REDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYG 91
+++AL + R+ + D FLLR+LR++ F + +E L +++ R
Sbjct: 12 QKEALAKFRENVQDVLP-ALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKD 67
Score = 40.5 bits (95), Expect = 1e-05
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 224 LNLVSEKIRKRIKVSVIVNARFLLRFLRSKKFSVPMAEEALERYILLRNTYG 275
L E ++ + + FLLR+LR++ F + +E L +++ R
Sbjct: 16 LAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKD 67
>d1xoca1 c.94.1.1 (A:17-520) Oligo-peptide binding protein (OPPA)
{Bacillus subtilis [TaxId: 1423]}
Length = 504
Score = 33.9 bits (76), Expect = 0.020
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 118 PKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLME-DEENQVRG 166
P++ I P +FN T+ I M Y L + DE+ V+
Sbjct: 2 PQQGGDLVVGSIGEPTLFNSLYSTDDASTDIENMLYSFLTKTDEKLNVKL 51
>d1zlqa1 c.94.1.1 (A:3-501) Nickel-binding periplasmic protein NikA
{Escherichia coli [TaxId: 562]}
Length = 499
Score = 33.2 bits (74), Expect = 0.036
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 127 VIIARP---GVFNPHKYTNSHMLQIHGMTYETLME-DEENQV 164
+ A P G NPH YT + M M YE L++ + V
Sbjct: 4 ITTAWPVNVGPLNPHLYTPNQMF-AQSMVYEPLVKYQADGSV 44
>d1jeta_ c.94.1.1 (A:) Oligo-peptide binding protein (OPPA)
{Salmonella typhimurium [TaxId: 90371]}
Length = 517
Score = 31.2 bits (69), Expect = 0.18
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 125 RRVIIARPGVFNPHKYTNSHMLQIHGMTYETLME-DEENQV 164
R + +PHK + +E L+ D E
Sbjct: 16 VRNNGSEVQSLDPHKIEGVPESNVSRDLFEGLLISDVEGHP 56
>d1uqwa_ c.94.1.1 (A:) Hypothetical protein YliB {Escherichia coli
[TaxId: 562]}
Length = 487
Score = 30.9 bits (68), Expect = 0.20
Identities = 7/47 (14%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 124 GRRVIIAR---PGVFNPHKYTNSHMLQIHGMTYETLME-DEENQVRG 166
+ V++A +P+ ++ + Y+ L D+E +++
Sbjct: 2 AKDVVVAVGSNFTTLDPYDANDTLSQAVAKSFYQGLFGLDKEMKLKN 48
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus
aculeatus) [TaxId: 5053]}
Length = 339
Score = 29.3 bits (65), Expect = 0.58
Identities = 17/121 (14%), Positives = 29/121 (23%), Gaps = 16/121 (13%)
Query: 120 RDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFP 179
D G +P F H TNS I G+ N ++
Sbjct: 92 WDGEGGNGGKTKPKFFAAHSLTNS---VISGLKIV-------NSPVQVFSVAGSDYLTLK 141
Query: 180 HLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSV 239
+T+ N + + I + + V+ + I S
Sbjct: 142 DITIDNSDGDDNGGHNTDAFDIGTSTYVTISGAT------VYNQDDCVAVNSGENIYFSG 195
Query: 240 I 240
Sbjct: 196 G 196
>d2bgxa1 a.20.1.1 (A:180-260) Probable N-acetylmuramoyl-L-alanine
amidase YbjR, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 81
Score = 25.2 bits (55), Expect = 3.7
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 77 EEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPGVFN 136
+ + Y+ R + + +D ++ L + GY + RRVI+A F
Sbjct: 3 AQRVNFYLAGRAPH-----TPVD-TASLLELLARYGYDVKPDMTPREQRRVIMAFQMHFR 56
Query: 137 PHKYT 141
P Y
Sbjct: 57 PTLYN 61
>d1a9xb1 c.8.3.1 (B:1502-1652) Carbamoyl phosphate synthetase, small
subunit N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 151
Score = 25.0 bits (54), Expect = 7.9
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 42 LRQWITKNSRIQTCRLDARFLLRFLRSK 69
L ++ +++ + +D R L R LR K
Sbjct: 97 LSSYLKRHNIVAIADIDTRKLTRLLREK 124
>d1tp6a_ d.17.4.12 (A:) Hypothetical protein PA1314 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 126
Score = 24.7 bits (54), Expect = 9.2
Identities = 6/40 (15%), Positives = 14/40 (35%)
Query: 17 SKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCR 56
++ GL+I S + A + R+ + +
Sbjct: 63 TRPGLRIEIDGESLLASGVDGATLAYREIQSDAAGRSERL 102
>d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum
tuberosum) [TaxId: 4113]}
Length = 523
Score = 25.4 bits (55), Expect = 9.3
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 103 PTMQELLKLGYLFATPKRDKLGRR 126
P + E + Y PKRD RR
Sbjct: 2 PAVGEDFPIDYADWLPKRDPNDRR 25
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 123
Score = 24.7 bits (53), Expect = 9.4
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 1/80 (1%)
Query: 27 ELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILL 86
+ ED+ T Q++ + L L ++ M ALE+
Sbjct: 6 QFTEDKPTLNFFYQQVKNDYML-EIADQVDQEIALKLGCLEIRRSYGEMRGNALEKKSNY 64
Query: 87 RNTYGDLAFSKLDPKNPTMQ 106
D+ + PK+
Sbjct: 65 EVLEKDVGLRRFFPKSLLDS 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.393
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,138,311
Number of extensions: 55599
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 19
Length of query: 300
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,240,546
Effective search space: 266717390
Effective search space used: 266717390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)