BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8728
(379 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 306 GEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLS 365
+Q+ +++LG++ TA + EI A + L++KYHPD+ + D+E ++KF EI++A E+L+
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEA---EAKFKEIKEAYEVLT 57
Query: 366 NKHAK 370
+ +
Sbjct: 58 DSQKR 62
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 306 GEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLS 365
+Q+ +++LG++ TA + EI A + L++KYHPD+ + D+E ++KF EI++A E+L+
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEA---EAKFKEIKEAYEVLT 57
Query: 366 NKHAK 370
+ +
Sbjct: 58 DSQKR 62
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 52.8 bits (125), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 306 GEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLS 365
+Q+ +++LG++ TA + EI A + L++KYHPD+ + D+E ++KF EI++A E+L+
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEA---EAKFKEIKEAYEVLT 57
Query: 366 NKHAK 370
+ +
Sbjct: 58 DSQKR 62
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 48.5 bits (114), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 8/67 (11%)
Query: 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSN 366
E + VLG+ A Q E+ A R L++KYHPDK ++ E KF +I QA E+LS+
Sbjct: 5 ETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGE------KFKQISQAYEVLSD 58
Query: 367 KHAKRRQ 373
AK+R+
Sbjct: 59 --AKKRE 63
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+ +LG+ +A + +I A L++KYHPDK KS + ++KF EI +A E LS+ A
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDA----EAKFREIAEAYETLSD--AN 63
Query: 371 RRQK 374
RR++
Sbjct: 64 RRKE 67
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+++LG+ A Q EI A L+ KYHPD K D + + KF ++ +A E+LS++ K
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKE---KFSQLAEAYEVLSDE-VK 65
Query: 371 RRQ 373
R+Q
Sbjct: 66 RKQ 68
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 309 NAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKH 368
+ ++VLG++ TA Q++I A + L+ ++HPDK K + +F +I +A E+LSN+
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGA----EDRFIQISKAYEILSNEE 73
Query: 369 AK 370
+
Sbjct: 74 KR 75
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSN 366
E + +LG++ +A + E+ R ++KYHPDK D E KF EI +A E+L N
Sbjct: 7 ETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTE------KFKEISEAFEIL-N 59
Query: 367 KHAKRRQKNQ 376
KR +Q
Sbjct: 60 DPQKREIYDQ 69
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 42.4 bits (98), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+++L + +A +I A R ++++HPDK + + K+ + KF E+ +A E+LS+KH +
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDK--NPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNK 367
++ ++ LGLA A EI A R +++YHPDK K ++ KF EI +A ++LS+
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEE----KFKEIAEAYDVLSDP 58
Query: 368 HAK 370
+
Sbjct: 59 RKR 61
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSN 366
E + VLG+ A +E+ A R +++K+HPDK E +F +I QA E+LS+
Sbjct: 7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAE------QFKQISQAYEVLSD 60
Query: 367 KHAKRRQ 373
+ K+RQ
Sbjct: 61 E--KKRQ 65
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 42.0 bits (97), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 306 GEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLS 365
G N ++VLG+ +A +I A R L++++HPD K+ + K+ + KF + +A E+LS
Sbjct: 7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPD--KNPDNKEEAEKKFKLVSEAYEVLS 64
Query: 366 NKHAKRRQKNQRS 378
+ +K+R R+
Sbjct: 65 D--SKKRSLYDRA 75
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 42.0 bits (97), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSD---EEKQHNQSKFYEIQQACEL 363
+++ + +LG +A S++ + L + YHPDK +D + KF EI QA ++
Sbjct: 15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKI 74
Query: 364 LSNKHAKRRQKNQRS 378
L N+ K++ QRS
Sbjct: 75 LGNEETKKKYDLQRS 89
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 306 GEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLS 365
G + ++VL + A I A R L++K+HPD K+ E K+ + +F ++ +A E+LS
Sbjct: 7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPD--KNPENKEEAERRFKQVAEAYEVLS 64
Query: 366 NKHAKRRQKNQR 377
+ AK+R R
Sbjct: 65 D--AKKRDIYDR 74
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSN 366
+QN + +LG++ TA EI A + L++K HPDK ++ + F +I +A E+L +
Sbjct: 20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGD---FLKINRAYEVLKD 76
Query: 367 KHAKRR 372
+ +++
Sbjct: 77 EDLRKK 82
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNK 367
QN + +LG++ TA EI A + L++K HPDK ++ + F +I +A E+L ++
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN---PNAHGDFLKINRAYEVLKDE 58
Query: 368 HAKRR 372
+++
Sbjct: 59 DLRKK 63
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSN 366
++ + VLGL A +I + R L++KYHPDK + E KF EI A +L++
Sbjct: 17 ESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEA---ADKFKEINNAHAILTD 72
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 57/100 (57%), Gaps = 9/100 (9%)
Query: 280 VDTWEFAQQHGWYETWSQIVE-------LGDPFGEQNAFKVLGLAHTARQSEINSACRHL 332
+ +E AQ+H E QI E L +++ +K+LG+ A++ EI A R L
Sbjct: 349 IQDYETAQEHN--ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406
Query: 333 SVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRR 372
++++HPD +++EEK+ + KF +I A E+LS+ +++
Sbjct: 407 ALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 57/100 (57%), Gaps = 9/100 (9%)
Query: 280 VDTWEFAQQHGWYETWSQIVE-------LGDPFGEQNAFKVLGLAHTARQSEINSACRHL 332
+ +E AQ+H E QI E L +++ +K+LG+ A++ EI A R L
Sbjct: 349 IQDYETAQEHN--ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406
Query: 333 SVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRR 372
++++HPD +++EEK+ + KF +I A E+LS+ +++
Sbjct: 407 ALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXRKK 446
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEK---QHNQSKFYEIQQACELLSNK 367
+ +LG +A S++ + L + YHPDK +D + KF EI QA ++L N+
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72
Query: 368 HAKRRQKNQRSQ 379
KR QR +
Sbjct: 73 ETKREYDLQRCE 84
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 36.6 bits (83), Expect = 0.025, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 306 GEQNAFKVLGLAHTA-RQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELL 364
G +N + VL + + ++ A R L+ K+HPD+ K+ EEK + +F I A E L
Sbjct: 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETL 72
Query: 365 SNKHAK 370
+ AK
Sbjct: 73 KDDEAK 78
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 36.6 bits (83), Expect = 0.025, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+++LG++ A ++ A R L++K+HPDK + + F I A +LSN K
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATE----AFKAIGTAYAVLSNPE-K 64
Query: 371 RRQKNQ 376
R+Q +Q
Sbjct: 65 RKQYDQ 70
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 36.2 bits (82), Expect = 0.033, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNK 367
++ + ++G+ T I +A R L+ KYHPD +K + +++F E+ +A E+LS++
Sbjct: 5 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDA----EARFKEVAEAWEVLSDE 60
Query: 368 HAKRRQKNQRSQ 379
+R + +Q Q
Sbjct: 61 Q-RRAEYDQMWQ 71
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+ +LG+ T I +A R L+ KYHPD +K ++ ++KF ++ +A E+L ++ +
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDA----EAKFKDLAEAWEVLKDEQRR 86
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 32.7 bits (73), Expect = 0.33, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+ +LG+ TA Q++I +A YHPD+ E +F I QA +L + +
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAE---RFTRISQAYVVLGSATLR 76
Query: 371 RR 372
R+
Sbjct: 77 RK 78
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 31.2 bits (69), Expect = 0.88, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDK 340
++++ +LG+ A + E+N A R L+V HPDK
Sbjct: 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDK 59
>pdb|3ZF7|FF Chain f, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 429
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 160 VGNIGHETGTIWWCLAAAYACYPVYWYVD----ESTACTVMVLASALAFDTLSKRWQTKP 215
V I GTI + A + +D +S AC V + F + KRW
Sbjct: 183 VSEIQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRWGVAC 242
Query: 216 KPRK--RFLRRCLTIGA 230
PRK R LR+ IGA
Sbjct: 243 LPRKTHRGLRKVACIGA 259
>pdb|3PXD|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: R1835p
Length = 214
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 2 SRKHNSSDTNYVTSRTYNNSDKTKVHAEKSLYITYLLWLVGGIFGVHHFYLGRDIQ 57
+RKH+ + TN +T T + KT + Y L + GG + V +F++ + I+
Sbjct: 24 ARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIK 79
>pdb|2ING|X Chain X, X-Ray Structure Of The Brca1 Brct Mutant M1775k
Length = 213
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 2 SRKHNSSDTNYVTSRTYNNSDKTKVHAEKSLYITYLLWLVGGIFGVHHFYLGRDIQ 57
+RKH+ + TN +T T + KT + Y L + GG + V +F++ + I+
Sbjct: 23 ARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIK 78
>pdb|1T2U|A Chain A, Structural Basis Of Phosphopeptide Recognition By The
Brct Domain Of Brca1: Structure Of Brca1 Missense
Variant V1809f
Length = 214
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 2 SRKHNSSDTNYVTSRTYNNSDKTKVHAEKSLYITYLLWLVGGIFGVHHFYLGRDIQ 57
+RKH+ + TN +T T + KT + Y L + GG + V +F++ + I+
Sbjct: 24 ARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIK 79
>pdb|3PXB|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: T1700a
Length = 214
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 2 SRKHNSSDTNYVTSRTYNNSDKTKVHAEKSLYITYLLWLVGGIFGVHHFYLGRDIQ 57
+RKH+ + TN +T T + KT + Y L + GG + V +F++ + I+
Sbjct: 24 ARKHHITLTNLITEETTHVVMKTDAEFVCERALKYFLGIAGGKWVVSYFWVTQSIK 79
>pdb|3K15|A Chain A, Crystal Structure Of Brca1 Brct D1840t In Complex With A
Minimal Recognition Tetrapeptide With An Amidated
C-Terminus
pdb|3K16|A Chain A, Crystal Structure Of Brca1 Brct D1840t In Complex With A
Minimal Recognition Tetrapeptide With A Free Carboxy
C-Terminus
Length = 215
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 2 SRKHNSSDTNYVTSRTYNNSDKTKVHAEKSLYITYLLWLVGGIFGVHHFYLGRDIQ 57
+RKH+ + TN +T T + KT + Y L + GG + V +F++ + I+
Sbjct: 25 ARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIK 80
>pdb|3K0H|A Chain A, The Crystal Structure Of Brca1 Brct In Complex With A
Minimal Recognition Tetrapeptide With An Amidated
C-terminus
pdb|3K0K|A Chain A, Crystal Structure Of Brca1 Brct In Complex With A
Minimal Recognition Tetrapeptide With A Free Carboxy
C-Terminus
Length = 215
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 2 SRKHNSSDTNYVTSRTYNNSDKTKVHAEKSLYITYLLWLVGGIFGVHHFYLGRDIQ 57
+RKH+ + TN +T T + KT + Y L + GG + V +F++ + I+
Sbjct: 25 ARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIK 80
>pdb|1JNX|X Chain X, Crystal Structure Of The Brct Repeat Region From The
Breast Cancer Associated Protein, Brca1
pdb|1T15|A Chain A, Crystal Structure Of The Brca1 Brct Domains In Complex
With The Phosphorylated Interacting Region From Bach1
Helicase
pdb|1T29|A Chain A, Crystal Structure Of The Brca1 Brct Repeats Bound To A
Phosphorylated Bach1 Peptide
pdb|1T2V|A Chain A, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|B Chain B, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|C Chain C, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|D Chain D, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|E Chain E, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1Y98|A Chain A, Structure Of The Brct Repeats Of Brca1 Bound To A Ctip
Phosphopeptide
Length = 214
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 2 SRKHNSSDTNYVTSRTYNNSDKTKVHAEKSLYITYLLWLVGGIFGVHHFYLGRDIQ 57
+RKH+ + TN +T T + KT + Y L + GG + V +F++ + I+
Sbjct: 24 ARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIK 79
>pdb|3PXA|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: G1656d
Length = 214
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 2 SRKHNSSDTNYVTSRTYNNSDKTKVHAEKSLYITYLLWLVGGIFGVHHFYLGRDIQ 57
+RKH+ + TN +T T + KT + Y L + GG + V +F++ + I+
Sbjct: 24 ARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIK 79
>pdb|3PXC|X Chain X, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: R1699q
Length = 214
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 2 SRKHNSSDTNYVTSRTYNNSDKTKVHAEKSLYITYLLWLVGGIFGVHHFYLGRDIQ 57
+RKH+ + TN +T T + KT + Y L + GG + V +F++ + I+
Sbjct: 24 ARKHHITLTNLITEETTHVVMKTDAEFVCEQTLKYFLGIAGGKWVVSYFWVTQSIK 79
>pdb|1N5O|X Chain X, Structural Consequences Of A Cancer-Causing Brca1-Brct
Missense Mutation
Length = 214
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 2 SRKHNSSDTNYVTSRTYNNSDKTKVHAEKSLYITYLLWLVGGIFGVHHFYLGRDIQ 57
+RKH+ + TN +T T + KT + Y L + GG + V +F++ + I+
Sbjct: 24 ARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIK 79
>pdb|3PXE|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
pdb|3PXE|B Chain B, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
pdb|3PXE|C Chain C, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
pdb|3PXE|D Chain D, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
Length = 214
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 2 SRKHNSSDTNYVTSRTYNNSDKTKVHAEKSLYITYLLWLVGGIFGVHHFYLGRDIQ 57
+RKH+ + TN +T T + KT + Y L + GG + V +F++ + I+
Sbjct: 24 ARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIK 79
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 28.1 bits (61), Expect = 8.9, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNK 367
+ +K +G+A ++ R + HPDKA +Q+ + F E+ A N+
Sbjct: 49 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQ 108
Query: 368 HAK 370
K
Sbjct: 109 GQK 111
>pdb|3COJ|X Chain X, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|A Chain A, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|B Chain B, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|C Chain C, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|D Chain D, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|E Chain E, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|F Chain F, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|G Chain G, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
Length = 235
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 2 SRKHNSSDTNYVTSRTYNNSDKTKVHAEKSLYITYLLWLVGGIFGVHHFYLGRDIQ 57
+RKH+ + TN +T T + KT + Y L + GG + V +F++ + I+
Sbjct: 45 ARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIK 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,188,321
Number of Sequences: 62578
Number of extensions: 513283
Number of successful extensions: 907
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 43
length of query: 379
length of database: 14,973,337
effective HSP length: 100
effective length of query: 279
effective length of database: 8,715,537
effective search space: 2431634823
effective search space used: 2431634823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)