Query psy8728
Match_columns 379
No_of_seqs 380 out of 2543
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 17:42:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA01886 TM2 domain-containing 99.9 4.1E-22 8.9E-27 157.0 6.0 63 29-92 1-63 (78)
2 COG0484 DnaJ DnaJ-class molecu 99.9 9.5E-22 2E-26 195.8 8.1 67 306-375 2-68 (371)
3 KOG0713|consensus 99.8 4.6E-20 9.9E-25 180.0 8.1 70 304-376 12-81 (336)
4 PRK14288 chaperone protein Dna 99.7 3E-18 6.4E-23 172.6 8.0 66 307-375 2-67 (369)
5 PRK14296 chaperone protein Dna 99.7 3.8E-18 8.2E-23 172.0 8.0 65 307-375 3-67 (372)
6 PRK14279 chaperone protein Dna 99.7 1.6E-17 3.5E-22 168.5 7.8 67 307-376 8-74 (392)
7 PF00226 DnaJ: DnaJ domain; I 99.7 2.9E-17 6.3E-22 124.7 7.3 64 309-374 1-64 (64)
8 PRK14286 chaperone protein Dna 99.7 2.2E-17 4.8E-22 166.5 8.3 66 307-375 3-68 (372)
9 KOG0718|consensus 99.7 3.4E-17 7.5E-22 164.8 7.8 71 305-375 6-76 (546)
10 KOG0712|consensus 99.7 3.5E-17 7.5E-22 161.3 6.9 65 306-376 2-66 (337)
11 PRK14287 chaperone protein Dna 99.7 5.9E-17 1.3E-21 163.3 8.2 65 307-375 3-67 (371)
12 PRK14299 chaperone protein Dna 99.7 8.1E-17 1.8E-21 157.4 8.3 65 307-375 3-67 (291)
13 KOG0717|consensus 99.7 5.8E-17 1.3E-21 163.1 6.8 74 304-379 4-77 (508)
14 PRK14282 chaperone protein Dna 99.7 8.7E-17 1.9E-21 162.0 7.8 67 307-375 3-69 (369)
15 PRK14276 chaperone protein Dna 99.7 8.3E-17 1.8E-21 162.7 7.7 65 307-375 3-67 (380)
16 PRK14283 chaperone protein Dna 99.7 9.3E-17 2E-21 162.2 7.8 66 307-376 4-69 (378)
17 PTZ00037 DnaJ_C chaperone prot 99.7 7.6E-17 1.7E-21 164.8 7.3 64 305-375 25-88 (421)
18 PRK14295 chaperone protein Dna 99.7 1E-16 2.2E-21 162.6 7.9 66 307-375 8-73 (389)
19 PRK14277 chaperone protein Dna 99.7 1.2E-16 2.7E-21 161.7 8.4 66 307-375 4-69 (386)
20 PRK14285 chaperone protein Dna 99.7 1.1E-16 2.4E-21 161.0 7.8 65 308-375 3-67 (365)
21 KOG0550|consensus 99.7 1.9E-16 4.1E-21 158.1 9.2 148 224-375 261-438 (486)
22 PRK14298 chaperone protein Dna 99.7 1.3E-16 2.7E-21 161.2 7.5 65 307-375 4-68 (377)
23 PRK14301 chaperone protein Dna 99.7 1.6E-16 3.4E-21 160.4 7.7 66 307-375 3-68 (373)
24 KOG4272|consensus 99.7 8.2E-17 1.8E-21 141.3 4.9 77 5-82 73-149 (164)
25 PRK14294 chaperone protein Dna 99.7 2E-16 4.4E-21 159.1 8.4 66 307-375 3-68 (366)
26 PRK14280 chaperone protein Dna 99.7 1.7E-16 3.8E-21 160.2 7.9 65 307-375 3-67 (376)
27 PRK14291 chaperone protein Dna 99.6 1.9E-16 4.1E-21 160.2 7.7 65 307-375 2-66 (382)
28 PRK14297 chaperone protein Dna 99.6 1.8E-16 3.9E-21 160.2 7.5 66 307-375 3-68 (380)
29 PRK14278 chaperone protein Dna 99.6 1.6E-16 3.5E-21 160.5 6.9 64 308-375 3-66 (378)
30 PRK14284 chaperone protein Dna 99.6 2.9E-16 6.3E-21 159.3 8.1 65 308-375 1-65 (391)
31 PRK10767 chaperone protein Dna 99.6 3.4E-16 7.3E-21 157.8 8.1 66 307-375 3-68 (371)
32 KOG0716|consensus 99.6 3.3E-16 7.2E-21 148.9 6.9 69 304-375 27-95 (279)
33 PRK14281 chaperone protein Dna 99.6 4.3E-16 9.4E-21 158.3 7.6 65 308-375 3-67 (397)
34 KOG0715|consensus 99.6 5.7E-16 1.2E-20 151.2 7.6 70 304-377 39-108 (288)
35 KOG0691|consensus 99.6 8.6E-16 1.9E-20 149.7 7.9 68 307-377 4-71 (296)
36 PRK14289 chaperone protein Dna 99.6 1.4E-15 2.9E-20 154.2 8.3 66 307-375 4-69 (386)
37 smart00271 DnaJ DnaJ molecular 99.6 2E-15 4.3E-20 112.8 7.0 60 308-369 1-60 (60)
38 KOG0624|consensus 99.6 1.2E-15 2.5E-20 149.8 7.3 85 292-376 378-462 (504)
39 PRK10266 curved DNA-binding pr 99.6 1.4E-15 3.1E-20 149.6 7.7 64 308-375 4-67 (306)
40 PRK14290 chaperone protein Dna 99.6 1.5E-15 3.3E-20 152.7 7.4 66 308-375 3-68 (365)
41 PRK14300 chaperone protein Dna 99.6 1.6E-15 3.5E-20 153.0 7.3 64 308-375 3-66 (372)
42 TIGR02349 DnaJ_bact chaperone 99.6 1.8E-15 3.9E-20 151.5 7.4 63 309-375 1-63 (354)
43 PRK14292 chaperone protein Dna 99.6 2.7E-15 5.9E-20 151.2 7.5 64 308-375 2-65 (371)
44 cd06257 DnaJ DnaJ domain or J- 99.6 7.4E-15 1.6E-19 107.7 7.0 55 309-366 1-55 (55)
45 PRK14293 chaperone protein Dna 99.6 3.9E-15 8.4E-20 150.3 7.3 64 308-375 3-66 (374)
46 KOG0719|consensus 99.6 5.3E-15 1.2E-19 138.0 7.6 72 304-376 10-81 (264)
47 PTZ00341 Ring-infected erythro 99.5 9.4E-15 2E-19 158.2 8.3 68 305-376 570-637 (1136)
48 PF05154 TM2: TM2 domain; Int 99.5 1.9E-14 4E-19 105.6 4.7 51 28-78 1-51 (51)
49 COG2214 CbpA DnaJ-class molecu 99.5 4.7E-14 1E-18 127.8 7.8 69 306-376 4-72 (237)
50 PRK01356 hscB co-chaperone Hsc 99.5 8E-14 1.7E-18 126.0 8.6 69 308-376 2-72 (166)
51 KOG0721|consensus 99.5 4.5E-14 9.8E-19 130.6 7.0 66 307-375 98-163 (230)
52 PHA03102 Small T antigen; Revi 99.5 3.3E-14 7.2E-19 126.6 5.4 63 307-376 4-68 (153)
53 PRK05014 hscB co-chaperone Hsc 99.5 1.9E-13 4.1E-18 124.2 8.4 69 308-376 1-73 (171)
54 TIGR03835 termin_org_DnaJ term 99.4 2.5E-13 5.4E-18 144.5 8.0 65 308-376 2-66 (871)
55 PRK00294 hscB co-chaperone Hsc 99.4 6.4E-13 1.4E-17 120.9 8.7 71 306-376 2-76 (173)
56 PRK03578 hscB co-chaperone Hsc 99.4 9.9E-13 2.2E-17 120.0 8.7 70 307-376 5-78 (176)
57 KOG0720|consensus 99.4 4.1E-13 9E-18 135.5 6.5 74 299-376 225-299 (490)
58 PTZ00100 DnaJ chaperone protei 99.3 2.1E-12 4.5E-17 109.9 6.2 55 304-365 61-115 (116)
59 PRK09430 djlA Dna-J like membr 99.3 2.3E-12 5E-17 124.7 6.6 64 304-367 196-263 (267)
60 KOG0722|consensus 99.3 2E-12 4.3E-17 122.3 4.5 68 304-375 29-96 (329)
61 KOG0714|consensus 99.2 1.7E-11 3.6E-16 116.5 5.3 68 307-376 2-69 (306)
62 PRK01773 hscB co-chaperone Hsc 99.2 1E-10 2.2E-15 106.5 8.3 69 308-376 2-74 (173)
63 PHA02624 large T antigen; Prov 99.1 6E-11 1.3E-15 125.1 6.3 61 306-373 9-71 (647)
64 COG5407 SEC63 Preprotein trans 99.1 8.1E-11 1.7E-15 118.8 6.1 68 308-375 98-167 (610)
65 TIGR00714 hscB Fe-S protein as 99.0 1.3E-09 2.8E-14 97.8 7.5 58 320-377 3-62 (157)
66 KOG1150|consensus 98.8 1.9E-08 4.1E-13 92.5 10.1 66 306-373 51-116 (250)
67 COG5269 ZUO1 Ribosome-associat 98.6 4.7E-08 1E-12 93.6 5.2 71 303-376 38-113 (379)
68 KOG1789|consensus 98.3 1.6E-06 3.4E-11 95.2 8.7 59 301-365 1274-1336(2235)
69 COG2314 XynA Predicted membran 98.3 1E-06 2.2E-11 72.7 4.4 57 26-86 4-60 (95)
70 KOG0723|consensus 98.3 1.5E-06 3.3E-11 72.5 5.4 58 304-368 52-109 (112)
71 KOG0568|consensus 98.0 6.6E-06 1.4E-10 77.5 4.9 56 307-366 46-102 (342)
72 COG1076 DjlA DnaJ-domain-conta 97.5 0.00054 1.2E-08 62.4 8.9 58 307-364 112-173 (174)
73 KOG3192|consensus 97.5 0.00015 3.2E-09 64.7 5.0 71 305-375 5-79 (168)
74 COG1076 DjlA DnaJ-domain-conta 96.4 0.0031 6.7E-08 57.5 3.7 66 310-375 3-72 (174)
75 PF03656 Pam16: Pam16; InterP 96.1 0.0079 1.7E-07 52.4 4.5 60 304-370 54-113 (127)
76 KOG0431|consensus 95.5 0.018 4E-07 60.0 5.1 50 316-365 396-449 (453)
77 PF13446 RPT: A repeated domai 92.9 0.3 6.5E-06 36.8 5.5 47 306-359 3-49 (62)
78 PF14687 DUF4460: Domain of un 88.0 1.2 2.5E-05 38.1 5.3 51 318-368 4-55 (112)
79 KOG0724|consensus 78.3 2.3 5.1E-05 42.3 3.9 57 319-375 3-60 (335)
80 PLN02922 prenyltransferase 74.3 98 0.0021 30.9 14.1 53 112-164 148-211 (315)
81 TIGR03747 conj_TIGR03747 integ 73.1 18 0.0004 34.7 8.2 53 99-157 168-220 (233)
82 COG1575 MenA 1,4-dihydroxy-2-n 72.3 35 0.00077 34.1 10.2 49 114-162 148-196 (303)
83 TIGR02235 menA_cyano-plnt 1,4- 69.6 42 0.00091 33.0 10.1 53 112-164 131-184 (285)
84 COG5336 Uncharacterized protei 68.7 5.4 0.00012 33.9 3.1 45 110-160 48-92 (116)
85 PHA03029 hypothetical protein; 66.0 5.2 0.00011 31.8 2.4 46 119-164 23-83 (92)
86 PF14348 DUF4400: Domain of un 65.3 29 0.00062 32.0 7.6 68 69-157 121-188 (198)
87 PRK13387 1,4-dihydroxy-2-napht 53.6 1.5E+02 0.0033 29.5 10.9 19 113-131 140-158 (317)
88 PRK07419 1,4-dihydroxy-2-napht 52.6 1.5E+02 0.0033 29.4 10.7 52 112-163 144-196 (304)
89 TIGR01666 YCCS hypothetical me 52.0 3.7E+02 0.0081 30.0 14.6 84 100-190 369-452 (704)
90 COG5552 Uncharacterized conser 51.9 35 0.00076 27.2 4.8 32 308-339 3-34 (88)
91 PRK05951 ubiA prenyltransferas 50.6 1.1E+02 0.0024 30.0 9.4 59 106-164 134-194 (296)
92 PF10041 DUF2277: Uncharacteri 50.6 71 0.0015 25.6 6.3 57 310-366 5-61 (78)
93 TIGR01667 YCCS_YHJK integral m 49.2 4.2E+02 0.0091 29.6 16.9 100 97-203 368-467 (701)
94 COG5454 Predicted secreted pro 48.5 62 0.0013 26.3 5.7 67 67-139 9-83 (89)
95 KOG1630|consensus 44.4 16 0.00035 35.6 2.3 89 143-243 231-323 (336)
96 PF02554 CstA: Carbon starvati 44.1 78 0.0017 32.6 7.2 95 58-159 85-179 (376)
97 KOG3442|consensus 43.2 37 0.00079 29.7 4.0 38 305-342 56-93 (132)
98 PRK10654 dcuC C4-dicarboxylate 42.5 1.2E+02 0.0025 32.0 8.5 71 81-160 90-160 (455)
99 PF12676 DUF3796: Protein of u 40.7 1.3E+02 0.0028 25.8 7.1 25 41-65 12-36 (118)
100 COG5102 SFT2 Membrane protein 39.2 3.1E+02 0.0067 25.4 9.4 108 106-246 57-178 (201)
101 TIGR00751 menA 1,4-dihydroxy-2 39.0 2.4E+02 0.0053 27.6 9.7 52 113-164 135-187 (284)
102 TIGR02230 ATPase_gene1 F0F1-AT 39.0 64 0.0014 27.1 4.8 25 134-158 66-90 (100)
103 PF09578 Spore_YabQ: Spore cor 37.4 1E+02 0.0022 24.3 5.5 64 67-157 8-71 (80)
104 CHL00196 psbY photosystem II p 35.8 15 0.00033 25.1 0.5 24 141-165 2-25 (36)
105 TIGR00802 nico high-affinity n 35.5 89 0.0019 30.9 5.9 99 61-164 86-199 (280)
106 PRK10747 putative protoheme IX 34.9 68 0.0015 32.6 5.3 43 144-186 6-57 (398)
107 PF06298 PsbY: Photosystem II 34.4 16 0.00035 25.0 0.5 24 141-165 2-25 (36)
108 TIGR02185 Trep_Strep conserved 32.4 4E+02 0.0087 24.5 10.7 55 157-215 51-105 (189)
109 PRK13240 pbsY photosystem II p 32.2 21 0.00045 25.1 0.7 24 141-165 2-25 (40)
110 PF12084 DUF3561: Protein of u 32.0 40 0.00087 28.5 2.5 48 104-157 18-73 (107)
111 PF12725 DUF3810: Protein of u 30.2 3.8E+02 0.0081 26.8 9.5 18 320-337 134-151 (318)
112 TIGR00540 hemY_coli hemY prote 30.1 36 0.00078 34.6 2.3 44 143-186 5-57 (409)
113 PF11833 DUF3353: Protein of u 30.0 4.6E+02 0.0099 24.4 9.8 21 71-91 30-50 (194)
114 PF02632 BioY: BioY family; I 27.8 2.1E+02 0.0045 25.4 6.5 57 29-88 24-81 (148)
115 PRK10726 hypothetical protein; 27.2 48 0.001 27.9 2.1 28 129-157 35-70 (105)
116 PF09527 ATPase_gene1: Putativ 25.8 1.6E+02 0.0035 21.2 4.6 40 114-159 10-49 (55)
117 PF04224 DUF417: Protein of un 25.7 1.6E+02 0.0035 27.1 5.5 94 33-135 17-110 (175)
118 PF11712 Vma12: Endoplasmic re 25.6 1.5E+02 0.0033 25.8 5.2 54 33-89 86-140 (142)
119 COG5130 YIP3 Prenylated rab ac 25.4 1.4E+02 0.003 26.9 4.7 35 145-180 83-126 (169)
120 cd03505 Delta9-FADS-like The D 24.2 46 0.00099 30.7 1.7 75 35-130 11-89 (178)
121 PF07709 SRR: Seven Residue Re 23.0 52 0.0011 17.6 1.1 13 353-365 2-14 (14)
122 COG2879 Uncharacterized small 22.3 1.3E+02 0.0027 23.3 3.4 29 327-360 26-54 (65)
123 COG4956 Integral membrane prot 21.8 5.3E+02 0.011 26.2 8.5 21 320-340 239-259 (356)
124 PF01534 Frizzled: Frizzled/Sm 21.5 2.6E+02 0.0056 28.2 6.5 96 144-242 141-243 (328)
125 TIGR02893 spore_yabQ spore cor 21.1 3.8E+02 0.0083 23.3 6.7 27 60-88 10-36 (130)
126 COG4214 XylH ABC-type xylose t 20.4 2.1E+02 0.0046 29.5 5.6 21 119-139 82-102 (394)
127 PF11833 DUF3353: Protein of u 20.1 1.1E+02 0.0023 28.6 3.2 35 317-352 1-35 (194)
128 TIGR01476 chlor_syn_BchG bacte 20.0 7.4E+02 0.016 23.8 9.3 13 115-127 135-147 (283)
No 1
>PHA01886 TM2 domain-containing protein
Probab=99.86 E-value=4.1e-22 Score=156.98 Aligned_cols=63 Identities=40% Similarity=0.827 Sum_probs=60.0
Q ss_pred CchHHHHHHHHHHhhhcccceeecCCchhHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhchh
Q psy8728 29 EKSLYITYLLWLVGGIFGVHHFYLGRDIQGFLWWCTLGGYFGFGWLRDIFHIQNYVADANKDRD 92 (379)
Q Consensus 29 ~k~~~~a~~l~~~~G~~G~HrfYlg~~~~g~~~~~t~gg~~~i~~~~D~~~i~~~v~~~n~~~~ 92 (379)
.||+.+||+||+|+|.+|+||||||++++|++|++|+ |++||||++|+|+||.+|+++|.+.+
T Consensus 1 ~Ks~~~AylL~~flG~~G~HRFYlG~~~~Gi~~l~t~-G~~gig~liD~flIp~~v~~~N~~~~ 63 (78)
T PHA01886 1 MKSTAIAYVLWFFLGFFGIHRFYTGNIATGIIWLFTG-GLFGIGWFIDLFLTAGLVQSSNVRWR 63 (78)
T ss_pred CCcHHHHHHHHHHHhhcccchhhcCChhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3899999999999999999999999999999999999 55899999999999999999999876
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=9.5e-22 Score=195.76 Aligned_cols=67 Identities=33% Similarity=0.616 Sum_probs=63.6
Q ss_pred CccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 306 GEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 306 ~~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
..+|||+||||+++||.+|||||||+||++||||+++++ ++|+++|++|+|||||||||+||+.||+
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~---~~AeeKFKEI~eAYEVLsD~eKRa~YD~ 68 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD---KEAEEKFKEINEAYEVLSDPEKRAAYDQ 68 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---HHHHHHHHHHHHHHHHhCCHHHHHHhhc
Confidence 468999999999999999999999999999999999954 5999999999999999999999999996
No 3
>KOG0713|consensus
Probab=99.81 E-value=4.6e-20 Score=180.00 Aligned_cols=70 Identities=33% Similarity=0.583 Sum_probs=66.0
Q ss_pred CCCccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhhh
Q psy8728 304 PFGEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKNQ 376 (379)
Q Consensus 304 ~~~~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~~ 376 (379)
....+|+|++|||+++|+.+|||+||||||+++|||||+++ +.|.+.|++|+.||||||||.+|+.||+-
T Consensus 12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd---p~A~e~F~~in~AYEVLsDpekRk~YD~~ 81 (336)
T KOG0713|consen 12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD---PNANEKFKEINAAYEVLSDPEKRKHYDTY 81 (336)
T ss_pred hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---HHHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 34569999999999999999999999999999999999977 69999999999999999999999999973
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=3e-18 Score=172.59 Aligned_cols=66 Identities=27% Similarity=0.509 Sum_probs=61.9
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
..|||+||||+++||.+|||+|||+||++||||+++++ ++|+++|++|++||++|+||.+|+.||+
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~---~~a~~~f~~i~~AYevLsd~~kR~~YD~ 67 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD---KEAEEKFKLINEAYGVLSDEKKRALYDR 67 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc---cHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 37999999999999999999999999999999998743 3689999999999999999999999997
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=3.8e-18 Score=172.01 Aligned_cols=65 Identities=34% Similarity=0.607 Sum_probs=61.8
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
.+|||+||||+++||.+|||+|||+||++||||+++++ .|+++|++|++||++|+||.||+.||+
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~----~a~~~F~~i~~AyevLsD~~KR~~YD~ 67 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSP----DAHDKMVEINEAADVLLDKDKRKQYDQ 67 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc----hHHHHHHHHHHHHHHhcCHHHhhhhhh
Confidence 57999999999999999999999999999999998754 689999999999999999999999997
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.6e-17 Score=168.52 Aligned_cols=67 Identities=27% Similarity=0.498 Sum_probs=62.7
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhhh
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKNQ 376 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~~ 376 (379)
.+|||+||||+++||.+|||+|||+|+++||||+++++ +.|+++|++|++||++|+||+||+.||+-
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~ 74 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD---PAAEERFKAVSEAHDVLSDPAKRKEYDET 74 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC---hHHHHHHHHHHHHHHHhcchhhhhHHHHh
Confidence 47999999999999999999999999999999998754 47899999999999999999999999973
No 7
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.70 E-value=2.9e-17 Score=124.72 Aligned_cols=64 Identities=42% Similarity=0.696 Sum_probs=60.7
Q ss_pred chhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHh
Q psy8728 309 NAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQK 374 (379)
Q Consensus 309 d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd 374 (379)
|+|+||||+++++.++||++|+++++++|||+++++. ..+++.|.+|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~--~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE--AEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH--HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh--hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999988663 679999999999999999999999998
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2.2e-17 Score=166.46 Aligned_cols=66 Identities=35% Similarity=0.658 Sum_probs=62.1
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
++|||+||||+++||.+|||+|||+|+++||||+++++ ++|+++|++|++||++|+||.+|+.||+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 68 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN---KESEEKFKEATEAYEILRDPKKRQAYDQ 68 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---hHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 47999999999999999999999999999999998754 4689999999999999999999999997
No 9
>KOG0718|consensus
Probab=99.69 E-value=3.4e-17 Score=164.77 Aligned_cols=71 Identities=34% Similarity=0.523 Sum_probs=68.8
Q ss_pred CCccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 305 FGEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 305 ~~~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
.++.|+|.+|+|+++||.+|||+|||++++.+||||+.+|++|+.|++.|+.|++|||||+||++|..||+
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~ 76 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDN 76 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999997
No 10
>KOG0712|consensus
Probab=99.68 E-value=3.5e-17 Score=161.29 Aligned_cols=65 Identities=35% Similarity=0.567 Sum_probs=61.2
Q ss_pred CccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhhh
Q psy8728 306 GEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKNQ 376 (379)
Q Consensus 306 ~~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~~ 376 (379)
.++.+|+||||+++||.+|||||||+|+++|||||+++ +.++|++|++|||+||||++|+.||+-
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~------~~ekfkei~~AyevLsd~ekr~~yD~~ 66 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD------AGEKFKEISQAYEVLSDPEKREIYDQY 66 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc------HHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 45789999999999999999999999999999999876 589999999999999999999999973
No 11
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=5.9e-17 Score=163.32 Aligned_cols=65 Identities=32% Similarity=0.567 Sum_probs=61.4
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
..|||++|||+++||.+|||+|||+++++||||+++++ .++++|++|++||++|+||.+|+.||+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~----~~~~~f~~i~~Ay~~L~d~~kR~~YD~ 67 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAP----DAEDKFKEVKEAYDTLSDPQKKAHYDQ 67 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh----hHHHHHHHHHHHHHHhCcHhHHHHHHh
Confidence 47999999999999999999999999999999998743 688999999999999999999999997
No 12
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=8.1e-17 Score=157.37 Aligned_cols=65 Identities=35% Similarity=0.556 Sum_probs=61.6
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
..|||+||||+++||.+|||+|||++++++|||+++++ .++++|++|++||++|+||.+|+.||+
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~----~~~~~f~~i~~Ay~~L~d~~kr~~yD~ 67 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSP----GAEEKFKEINEAYTVLSDPEKRRIYDT 67 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh----hHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 47999999999999999999999999999999998754 688999999999999999999999997
No 13
>KOG0717|consensus
Probab=99.67 E-value=5.8e-17 Score=163.06 Aligned_cols=74 Identities=32% Similarity=0.563 Sum_probs=68.2
Q ss_pred CCCccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhhhccC
Q psy8728 304 PFGEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKNQRSQ 379 (379)
Q Consensus 304 ~~~~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~~~~~ 379 (379)
+...+.||+||||.++|+..|||++||+||++|||||+++ .-++|.++|+.|+.||+|||||+.|+.||++|+|
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd--~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreq 77 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPD--RIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQ 77 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCc--cHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHH
Confidence 4556899999999999999999999999999999999664 3479999999999999999999999999999875
No 14
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=8.7e-17 Score=161.97 Aligned_cols=67 Identities=30% Similarity=0.575 Sum_probs=62.1
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
.+|||+||||+++||.+|||+|||+|+++||||+++++ ++.|+++|++|++||++|+||.+|+.||+
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 69 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN--RKEAEQKFKEIQEAYEVLSDPQKRAMYDR 69 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc--hhHHHHHHHHHHHHHHHhcChhhHHHHhh
Confidence 47999999999999999999999999999999998642 24689999999999999999999999997
No 15
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=8.3e-17 Score=162.72 Aligned_cols=65 Identities=35% Similarity=0.533 Sum_probs=61.7
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
++|||+||||+++||.+|||+|||+|+++||||+++++ .|+++|++|++||++|+||.+|+.||+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~----~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 67 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEP----GAEEKYKEVQEAYETLSDPQKRAAYDQ 67 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc----CHHHHHHHHHHHHHHhcCHhhhhhHhh
Confidence 47999999999999999999999999999999998754 688999999999999999999999997
No 16
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=9.3e-17 Score=162.25 Aligned_cols=66 Identities=33% Similarity=0.592 Sum_probs=62.2
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhhh
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKNQ 376 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~~ 376 (379)
++|||+||||+++||.+|||+|||+|+++||||+++++ .|+++|++|++||++|+||.+|+.||+.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~----~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~ 69 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEE----GAEEKFKEISEAYAVLSDDEKRQRYDQF 69 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc----cHHHHHHHHHHHHHHhchhHHHHHHhhh
Confidence 57999999999999999999999999999999998753 7899999999999999999999999973
No 17
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.67 E-value=7.6e-17 Score=164.77 Aligned_cols=64 Identities=34% Similarity=0.554 Sum_probs=59.4
Q ss_pred CCccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 305 FGEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 305 ~~~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
...+|||+||||+++||.+|||+|||+||++||||++++ +++|++|++||++|+||.+|+.||+
T Consensus 25 ~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~-------~e~F~~i~~AYevLsD~~kR~~YD~ 88 (421)
T PTZ00037 25 VDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-------PEKFKEISRAYEVLSDPEKRKIYDE 88 (421)
T ss_pred ccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch-------HHHHHHHHHHHHHhccHHHHHHHhh
Confidence 346899999999999999999999999999999999753 3799999999999999999999997
No 18
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=1e-16 Score=162.60 Aligned_cols=66 Identities=35% Similarity=0.655 Sum_probs=62.1
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
.+|||+||||+++||.+|||+|||+|+++||||+++++ +.|+++|++|++||++|+||.+|+.||+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD---AKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc---hhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 47999999999999999999999999999999998754 4689999999999999999999999997
No 19
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=1.2e-16 Score=161.73 Aligned_cols=66 Identities=33% Similarity=0.614 Sum_probs=62.1
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
..|||+||||+++||.+|||+|||+++++||||+++++ +.|+++|++|++||++|+||.+|+.||+
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~vL~d~~kr~~yD~ 69 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD---KEAEQKFKEINEAYEILSDPQKRAQYDQ 69 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc---hHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 47999999999999999999999999999999998754 4688999999999999999999999997
No 20
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=1.1e-16 Score=160.96 Aligned_cols=65 Identities=32% Similarity=0.613 Sum_probs=61.7
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 308 ~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
+|||++|||+++||.+|||+|||+|+++||||+++++ +.|+++|++|++||++|+||.+|+.||+
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~vL~d~~kr~~yd~ 67 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN---KEAESIFKEATEAYEVLIDDNKRAQYDR 67 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC---HHHHHHHHHHHHHHHHHcCcchhHHHHh
Confidence 6999999999999999999999999999999998754 4788999999999999999999999997
No 21
>KOG0550|consensus
Probab=99.66 E-value=1.9e-16 Score=158.09 Aligned_cols=148 Identities=20% Similarity=0.258 Sum_probs=122.2
Q ss_pred hHHHHHHHHHHHHHHHHHH---------HhhhccccCCCCCcccHHHHHHhh-----hCCchHH-------------HHH
Q psy8728 224 RCLTIGACALLYSSLWGSY---------LYFNAKITDGEGEEIPLNEAIHHF-----FKSPWWV-------------DLK 276 (379)
Q Consensus 224 r~~~l~~a~l~~~~l~~~~---------ly~n~~~~~~~g~~~~~~e~i~~f-----l~~p~~~-------------~l~ 276 (379)
+-..+..|+..|+..+++. +|+|++.+.. +.....|+|.+| +++.+++ ++.
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~--rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI--RLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc--ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4457899999999999984 9999988776 344678888888 3344433 333
Q ss_pred HHHH---HHHHHHHhcChHHHHHHHHhcCCCCCccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHH
Q psy8728 277 QSLV---DTWEFAQQHGWYETWSQIVELGDPFGEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSK 353 (379)
Q Consensus 277 ~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~ 353 (379)
+++. +..|..+.....+.+++....+...+.+|+|++||+.++++.+|||++||++++.+|||++.+. +++++.+
T Consensus 339 ~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags--q~eaE~k 416 (486)
T KOG0550|consen 339 EAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS--QKEAEAK 416 (486)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch--hHHHHHH
Confidence 4442 3344444456788899999999999999999999999999999999999999999999999865 6789999
Q ss_pred HHHHHHHHHHcCChhHHHHHhh
Q psy8728 354 FYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 354 f~~I~eAYevLsdp~kR~~yd~ 375 (379)
|+++.+||++|+||.+|.+||.
T Consensus 417 FkevgeAy~il~d~~kr~r~ds 438 (486)
T KOG0550|consen 417 FKEVGEAYTILSDPMKRVRFDS 438 (486)
T ss_pred HHHHHHHHHHhcCHHHHhhccc
Confidence 9999999999999999999996
No 22
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=1.3e-16 Score=161.24 Aligned_cols=65 Identities=34% Similarity=0.608 Sum_probs=61.4
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
.+|||+||||+++||.+|||+|||+|+++||||+++++ .++++|++|++||++|+||.+|+.||+
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~----~~~~~f~~i~~Ay~vL~d~~kR~~YD~ 68 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEP----DAEEKFKEISEAYAVLSDAEKRAQYDR 68 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCCh----hHHHHHHHHHHHHHHhcchHhhhhhhh
Confidence 47999999999999999999999999999999998754 688999999999999999999999997
No 23
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.6e-16 Score=160.37 Aligned_cols=66 Identities=30% Similarity=0.602 Sum_probs=62.2
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
.+|||++|||+++||.+|||+|||+|++++|||+++++ ++|+++|++|++||++|+||.+|+.||+
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~vL~d~~kr~~yD~ 68 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN---PEAEQKFKEAAEAYEVLRDAEKRARYDR 68 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC---hHHHHHHHHHHHHHHHhcchhhhhhhhh
Confidence 47999999999999999999999999999999998754 4688999999999999999999999997
No 24
>KOG4272|consensus
Probab=99.65 E-value=8.2e-17 Score=141.32 Aligned_cols=77 Identities=31% Similarity=0.363 Sum_probs=72.8
Q ss_pred CCCCCCCccCCccccCCcccccccCchHHHHHHHHHHhhhcccceeecCCchhHHHHHHhhhhhhhHHHHHHHHHhhH
Q psy8728 5 HNSSDTNYVTSRTYNNSDKTKVHAEKSLYITYLLWLVGGIFGVHHFYLGRDIQGFLWWCTLGGYFGFGWLRDIFHIQN 82 (379)
Q Consensus 5 ~~~~~~~~~~~~t~~~~~~~~~~~~k~~~~a~~l~~~~G~~G~HrfYlg~~~~g~~~~~t~gg~~~i~~~~D~~~i~~ 82 (379)
+.+|-++|.++|||.++.+.......+..++.+|.+|||+||++|||||.++.|++.|+|+|| +||||+||+++|.-
T Consensus 73 ~~~~~v~c~~~rtF~k~~pC~~~~Gy~~~ttlllSifLG~fG~DRFyLGy~~~glgKl~tlGG-lgIw~lVDiiLI~l 149 (164)
T KOG4272|consen 73 TVLDGVECHGNRTFPKEIPCNWTNGYSWTTTLLLSIFLGGFGADRFYLGYWALGLGKLFTLGG-LGIWWLVDIILISL 149 (164)
T ss_pred EecCCceeecccccccccceeeecCeEehHHHHHHHHhhhccccEEEeCchHHhHhhhhcccc-chhHHHHHHHHHHh
Confidence 467889999999999999888899999999999999999999999999999999999999988 89999999999864
No 25
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=2e-16 Score=159.12 Aligned_cols=66 Identities=29% Similarity=0.565 Sum_probs=62.0
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
.+|||+||||+++||.+|||+|||+|+++||||+++++ +.++++|++|++||++|+||.+|+.||+
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~~~~~~f~~~~~Ay~vL~d~~~r~~yD~ 68 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD---KEAEELFKEAAEAYEVLSDPKKRGIYDQ 68 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc---hHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 57999999999999999999999999999999998754 3688999999999999999999999996
No 26
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.7e-16 Score=160.17 Aligned_cols=65 Identities=37% Similarity=0.629 Sum_probs=61.7
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
.+|||+||||+++||.+|||+|||+|+++||||+++++ .|+++|++|++||++|+||.+|+.||+
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~----~a~~~f~~i~~Ay~vL~d~~kr~~yD~ 67 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEE----GADEKFKEISEAYEVLSDDQKRAQYDQ 67 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc----cHHHHHHHHHHHHHHhccHhHHHHHHh
Confidence 47999999999999999999999999999999998754 688999999999999999999999997
No 27
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.9e-16 Score=160.23 Aligned_cols=65 Identities=34% Similarity=0.594 Sum_probs=61.6
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
++|||++|||+++||.+|||+|||+|+++||||+++++ .++++|++|++||++|+||.+|+.||+
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~----~~~~~f~~i~~Ay~vLsd~~kR~~YD~ 66 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNP----EAEEKFKEINEAYQVLSDPEKRKLYDQ 66 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc----cHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 37999999999999999999999999999999998764 688999999999999999999999997
No 28
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.8e-16 Score=160.23 Aligned_cols=66 Identities=38% Similarity=0.656 Sum_probs=62.1
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
..|||+||||+++||.+|||+|||+|+++||||+++++ +.|+++|++|++||++|+||.+|+.||+
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 68 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN---KEAEEKFKEINEAYQVLSDPQKKAQYDQ 68 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---HHHHHHHHHHHHHHHHhcCHhhhCchhh
Confidence 37999999999999999999999999999999998754 4789999999999999999999999997
No 29
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=1.6e-16 Score=160.48 Aligned_cols=64 Identities=33% Similarity=0.512 Sum_probs=61.0
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 308 ~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
+|||+||||+++||.+|||+|||+|+++||||+++++ .|+++|++|++||++|+||.+|+.||+
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~----~a~~~f~~i~~Ay~vL~d~~~r~~YD~ 66 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDE----EAQEKFKEISVAYEVLSDPEKRRIVDL 66 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcH----HHHHHHHHHHHHHHHhchhhhhhhhhc
Confidence 6999999999999999999999999999999998743 689999999999999999999999997
No 30
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=2.9e-16 Score=159.32 Aligned_cols=65 Identities=35% Similarity=0.631 Sum_probs=61.4
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 308 ~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
.|||+||||+++||.+|||+|||+++++||||+++++ +.|+++|++|++||++|+||.+|+.||+
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 65 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD---AEAEKRFKEVSEAYEVLSDAQKRESYDR 65 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---hHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 4899999999999999999999999999999998754 4689999999999999999999999997
No 31
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=3.4e-16 Score=157.75 Aligned_cols=66 Identities=35% Similarity=0.653 Sum_probs=61.9
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
.+|||+||||+++||.+|||+|||+|+++||||+++++ +.|+++|++|++||++|+||.+|+.||+
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~~L~d~~~r~~yd~ 68 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD---KEAEEKFKEIKEAYEVLSDPQKRAAYDQ 68 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc---HHHHHHHHHHHHHHHHhcchhhhhHhhh
Confidence 47999999999999999999999999999999998754 3588999999999999999999999996
No 32
>KOG0716|consensus
Probab=99.63 E-value=3.3e-16 Score=148.93 Aligned_cols=69 Identities=35% Similarity=0.540 Sum_probs=64.3
Q ss_pred CCCccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 304 PFGEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 304 ~~~~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
.....|.|+|||++++||.++|||+||+|++++|||+++++ +++.++|++||+||++|+||.+|..||+
T Consensus 27 ~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~---P~~~dkf~eIN~Ay~ILsD~~kR~~YD~ 95 (279)
T KOG0716|consen 27 DVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN---PEATDKFKEINTAYAILSDPTKRNVYDE 95 (279)
T ss_pred ccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC---chhHHHHHHHHHHHHHhcChhhhhhHHH
Confidence 34468899999999999999999999999999999999864 4899999999999999999999999997
No 33
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=4.3e-16 Score=158.34 Aligned_cols=65 Identities=37% Similarity=0.694 Sum_probs=61.5
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 308 ~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
.|||+||||+++||.+|||+|||+|+++||||+++++ +.|+++|++|++||++|+||.+|+.||+
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 67 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN---KEAEEHFKEVNEAYEVLSNDDKRRRYDQ 67 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc---hHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 6999999999999999999999999999999998754 4688999999999999999999999997
No 34
>KOG0715|consensus
Probab=99.62 E-value=5.7e-16 Score=151.21 Aligned_cols=70 Identities=37% Similarity=0.561 Sum_probs=64.8
Q ss_pred CCCccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhhhc
Q psy8728 304 PFGEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKNQR 377 (379)
Q Consensus 304 ~~~~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~~~ 377 (379)
+....|||+||||+++||..|||+||++|++++|||.+.++ +++++|++|.+|||+|+|+.+|+.||..+
T Consensus 39 ~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~----~a~~kF~eI~~AYEiLsd~eKR~~YD~~~ 108 (288)
T KOG0715|consen 39 IISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK----EASKKFKEISEAYEILSDEEKRQEYDVYG 108 (288)
T ss_pred cCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc----chhhHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 34445999999999999999999999999999999999877 89999999999999999999999999743
No 35
>KOG0691|consensus
Probab=99.61 E-value=8.6e-16 Score=149.73 Aligned_cols=68 Identities=31% Similarity=0.593 Sum_probs=63.9
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhhhc
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKNQR 377 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~~~ 377 (379)
..|||++||+++++|.+||++|||++++++|||||+++ +.|.++|+++.+||+||+|+.+|++||+-+
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~d---P~A~ekFq~L~eAy~VL~D~~~R~~YDk~~ 71 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGD---PQAAEKFQELSEAYEVLSDEESRAAYDKLR 71 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC---hHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 68999999999999999999999999999999999966 359999999999999999999999999743
No 36
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=1.4e-15 Score=154.18 Aligned_cols=66 Identities=33% Similarity=0.606 Sum_probs=62.2
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
..|||++|||+++||.+|||+|||++++++|||+++++ ++|+++|++|++||++|+||.+|+.||+
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~yD~ 69 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD---KEAEEKFKEAAEAYDVLSDPDKRSRYDQ 69 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC---hHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 47999999999999999999999999999999998754 4689999999999999999999999997
No 37
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.60 E-value=2e-15 Score=112.82 Aligned_cols=60 Identities=40% Similarity=0.685 Sum_probs=55.1
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhH
Q psy8728 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHA 369 (379)
Q Consensus 308 ~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~k 369 (379)
+|+|+||||+++++.++||++||++++++|||++++. .+.+++.|++|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~--~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD--KEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--hHHHHHHHHHHHHHHHHHcCCCC
Confidence 4899999999999999999999999999999998853 46899999999999999999853
No 38
>KOG0624|consensus
Probab=99.60 E-value=1.2e-15 Score=149.81 Aligned_cols=85 Identities=33% Similarity=0.541 Sum_probs=76.3
Q ss_pred HHHHHHHHhcCCCCCccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHH
Q psy8728 292 YETWSQIVELGDPFGEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKR 371 (379)
Q Consensus 292 ~~~~~~~~~~~~~~~~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~ 371 (379)
.+..++..........+|||+||||.++|+..||.||||+++.+||||...++++|..|+++|..|..|-|||+||++|+
T Consensus 378 reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRr 457 (504)
T KOG0624|consen 378 REGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRR 457 (504)
T ss_pred HHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHh
Confidence 33344455555567889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q psy8728 372 RQKNQ 376 (379)
Q Consensus 372 ~yd~~ 376 (379)
.+||-
T Consensus 458 qFDnG 462 (504)
T KOG0624|consen 458 QFDNG 462 (504)
T ss_pred hccCC
Confidence 99983
No 39
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.60 E-value=1.4e-15 Score=149.60 Aligned_cols=64 Identities=28% Similarity=0.548 Sum_probs=60.9
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 308 ~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
+|||++|||++++|.+|||+|||+|++++|||+++++ .++++|++|++||++|+||.+|+.||+
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~----~~~~~f~~i~~Ay~~L~~~~kr~~yD~ 67 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP----DAEARFKEVAEAWEVLSDEQRRAEYDQ 67 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc----cHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6999999999999999999999999999999997643 789999999999999999999999996
No 40
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.5e-15 Score=152.74 Aligned_cols=66 Identities=35% Similarity=0.609 Sum_probs=61.7
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 308 ~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
.|||+||||+++||.+|||+|||+|++++|||+++++ ++.|+++|++|++||++|+||.+|+.||+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~ 68 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN--KAEAEEKFKEISEAYEVLSDPQKRRQYDQ 68 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--hhHHHHHHHHHHHHHHHhcChhhhhhhcc
Confidence 6999999999999999999999999999999998643 34789999999999999999999999997
No 41
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.6e-15 Score=152.96 Aligned_cols=64 Identities=28% Similarity=0.568 Sum_probs=60.7
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 308 ~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
+|||+||||+++||.+|||+|||+++++||||+++++ .++++|++|++||++|+||.+|+.||+
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~----~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 66 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAK----DAEKKFKEINAAYDVLKDEQKRAAYDR 66 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc----CHHHHHHHHHHHHHHhhhHhHhhHHHh
Confidence 6999999999999999999999999999999998743 578899999999999999999999997
No 42
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.59 E-value=1.8e-15 Score=151.50 Aligned_cols=63 Identities=35% Similarity=0.645 Sum_probs=59.7
Q ss_pred chhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 309 NAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 309 d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
|||++|||+++||.+|||+|||++++++|||++++ +.++++|++|++||++|+||.+|+.||+
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~----~~~~~~f~~i~~Ay~vL~d~~~R~~yd~ 63 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD----KEAEEKFKEINEAYEVLSDPEKRAQYDQ 63 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----ccHHHHHHHHHHHHHHhhChHHHHhhhh
Confidence 79999999999999999999999999999999873 3678999999999999999999999997
No 43
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=2.7e-15 Score=151.19 Aligned_cols=64 Identities=34% Similarity=0.596 Sum_probs=60.8
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 308 ~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
.|||++|||+++||.+|||+|||++++++|||+++++ .++++|++|++||++|+||.+|+.||+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~----~a~~~~~~i~~Ay~vL~d~~~r~~yd~ 65 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEK----GAAEKFAQINEAYAVLSDAEKRAHYDR 65 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCh----hHHHHHHHHHHHHHHhcchhhhhhHhh
Confidence 5899999999999999999999999999999998753 688999999999999999999999997
No 44
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.56 E-value=7.4e-15 Score=107.69 Aligned_cols=55 Identities=42% Similarity=0.719 Sum_probs=51.9
Q ss_pred chhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCC
Q psy8728 309 NAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSN 366 (379)
Q Consensus 309 d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsd 366 (379)
|+|++|||++++|.++||++||++++++|||++++. +.+++.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~---~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD---PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---HHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999998864 5889999999999999986
No 45
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=3.9e-15 Score=150.31 Aligned_cols=64 Identities=33% Similarity=0.599 Sum_probs=60.8
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 308 ~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
.|||+||||+++||.+|||+|||++++++|||+++++ .++++|++|++||++|+||.+|+.||.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~----~a~~~f~~i~~Ay~vL~~~~~R~~yd~ 66 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEP----GAEDRFKEINRAYEVLSDPETRARYDQ 66 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc----CHHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 6999999999999999999999999999999998754 688999999999999999999999996
No 46
>KOG0719|consensus
Probab=99.56 E-value=5.3e-15 Score=137.98 Aligned_cols=72 Identities=29% Similarity=0.574 Sum_probs=67.2
Q ss_pred CCCccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhhh
Q psy8728 304 PFGEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKNQ 376 (379)
Q Consensus 304 ~~~~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~~ 376 (379)
+....|.|+||||.++||.++||+||+++++++|||+++ .+.+.++.++|+.++.||++|+|.++|+.||..
T Consensus 10 ~f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~-eed~~ea~~kFq~l~k~y~iLsDeekR~~YDet 81 (264)
T KOG0719|consen 10 SFNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNH-EEDKVEATEKFQQLQKAYQILSDEEKRAVYDET 81 (264)
T ss_pred cccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcch-hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 355679999999999999999999999999999999987 667899999999999999999999999999974
No 47
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.54 E-value=9.4e-15 Score=158.25 Aligned_cols=68 Identities=22% Similarity=0.349 Sum_probs=63.2
Q ss_pred CCccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhhh
Q psy8728 305 FGEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKNQ 376 (379)
Q Consensus 305 ~~~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~~ 376 (379)
..+++||+||||+++||.+|||+|||+||+++|||+++++ .|.++|++|++||++||||.+|+.||+.
T Consensus 570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~----~A~ekFq~I~EAYeVLSDp~kRk~YD~~ 637 (1136)
T PTZ00341 570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN----EGFHKFKKINEAYQILGDIDKKKMYNKF 637 (1136)
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----hHHHHHHHHHHHHHHhCCHHHHHHHhhc
Confidence 4568999999999999999999999999999999998865 4778999999999999999999999974
No 48
>PF05154 TM2: TM2 domain; InterPro: IPR007829 This domain is composed of a pair of transmembrane alpha helices connected by a short linker. The function of this domain is unknown, however it occurs in a wide range or protein contexts.
Probab=99.50 E-value=1.9e-14 Score=105.63 Aligned_cols=51 Identities=43% Similarity=0.795 Sum_probs=48.0
Q ss_pred cCchHHHHHHHHHHhhhcccceeecCCchhHHHHHHhhhhhhhHHHHHHHH
Q psy8728 28 AEKSLYITYLLWLVGGIFGVHHFYLGRDIQGFLWWCTLGGYFGFGWLRDIF 78 (379)
Q Consensus 28 ~~k~~~~a~~l~~~~G~~G~HrfYlg~~~~g~~~~~t~gg~~~i~~~~D~~ 78 (379)
++||+.+|++|++|+|++|+||||+|++..|++++++..|++++||++|+|
T Consensus 1 ~~K~~~~a~lL~~~lG~~G~hrfYlg~~~~g~~~l~~~~g~~~i~~lid~i 51 (51)
T PF05154_consen 1 RQKSKWIAYLLSFFLGWFGLHRFYLGKYGKGILYLLTFIGILGIWWLIDLI 51 (51)
T ss_pred CCcCHHHHHHHHHHHhhccccceecCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 579999999999999999999999999999999999986668999999985
No 49
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=4.7e-14 Score=127.84 Aligned_cols=69 Identities=32% Similarity=0.538 Sum_probs=63.7
Q ss_pred CccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhhh
Q psy8728 306 GEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKNQ 376 (379)
Q Consensus 306 ~~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~~ 376 (379)
...++|+||||+++|+.+||+++||++++++|||+++++.. .++++|++|++||++|+|+.+|+.||..
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~--~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPK--VAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchh--HHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 45799999999999999999999999999999999986632 6999999999999999999999999973
No 50
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.49 E-value=8e-14 Score=126.02 Aligned_cols=69 Identities=30% Similarity=0.382 Sum_probs=63.5
Q ss_pred cchhhhcccCCC--CCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhhh
Q psy8728 308 QNAFKVLGLAHT--ARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKNQ 376 (379)
Q Consensus 308 ~d~Y~vLGv~~~--as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~~ 376 (379)
.|||++|||+++ ++.++|+++||++++++|||+..++.+++.+.+.+..||+||++|+||.+|+.|..+
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~ 72 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL 72 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 589999999997 689999999999999999999987777778888999999999999999999999754
No 51
>KOG0721|consensus
Probab=99.49 E-value=4.5e-14 Score=130.64 Aligned_cols=66 Identities=32% Similarity=0.580 Sum_probs=61.6
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
.-|+|+|||+++++|.+|||||||+|++++||||++++ ++.++.|..|.+||+.|+|++.|..|.+
T Consensus 98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~---~~~e~~~~~I~KAY~aLTD~~sreN~ek 163 (230)
T KOG0721|consen 98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE---EGDEEFFEAIAKAYQALTDKKSRENWEK 163 (230)
T ss_pred cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc---chhHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 36899999999999999999999999999999999876 5788999999999999999999998875
No 52
>PHA03102 Small T antigen; Reviewed
Probab=99.48 E-value=3.3e-14 Score=126.59 Aligned_cols=63 Identities=19% Similarity=0.344 Sum_probs=58.1
Q ss_pred ccchhhhcccCCCC--CHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhhh
Q psy8728 307 EQNAFKVLGLAHTA--RQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKNQ 376 (379)
Q Consensus 307 ~~d~Y~vLGv~~~a--s~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~~ 376 (379)
.+.+|+||||+++| |.+|||+|||++++++||||++++ ++|++|++||++|+|+.+|..||.-
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~-------e~~k~in~Ay~~L~d~~~r~~yd~~ 68 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDE-------EKMKELNTLYKKFRESVKSLRDLDG 68 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchh-------HHHHHHHHHHHHHhhHHHhcccccc
Confidence 36789999999999 999999999999999999997654 7999999999999999999999973
No 53
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.45 E-value=1.9e-13 Score=124.17 Aligned_cols=69 Identities=19% Similarity=0.279 Sum_probs=61.2
Q ss_pred cchhhhcccCCC--CCHHHHHHHHHHHHHHhCCCCCCC--hhHhHHHHHHHHHHHHHHHHcCChhHHHHHhhh
Q psy8728 308 QNAFKVLGLAHT--ARQSEINSACRHLSVKYHPDKAKS--DEEKQHNQSKFYEIQQACELLSNKHAKRRQKNQ 376 (379)
Q Consensus 308 ~d~Y~vLGv~~~--as~~eIkkaYRkla~~~HPDk~~~--~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~~ 376 (379)
.|||++|||+++ ++.++|+++||++++++|||+..+ +.+++.+.+.+..||+||++|+||.+|+.|+..
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~ 73 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS 73 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence 489999999996 578999999999999999999763 345567889999999999999999999999853
No 54
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.42 E-value=2.5e-13 Score=144.51 Aligned_cols=65 Identities=35% Similarity=0.579 Sum_probs=61.2
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhhh
Q psy8728 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKNQ 376 (379)
Q Consensus 308 ~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~~ 376 (379)
+|||+||||+++|+.++||++||+|++++|||+++++ .++++|++|++||++|+||.+|+.||+.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~----eAeekFqeINEAYEVLSDP~KRa~YD~f 66 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAP----DAASIFAEINEANDVLSNPKKRANYDKY 66 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh----hHHHHHHHHHHHHHHhCCHHHHHHHhhh
Confidence 6999999999999999999999999999999998764 6788999999999999999999999973
No 55
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.41 E-value=6.4e-13 Score=120.86 Aligned_cols=71 Identities=17% Similarity=0.285 Sum_probs=63.3
Q ss_pred CccchhhhcccCCCC--CHHHHHHHHHHHHHHhCCCCCCC--hhHhHHHHHHHHHHHHHHHHcCChhHHHHHhhh
Q psy8728 306 GEQNAFKVLGLAHTA--RQSEINSACRHLSVKYHPDKAKS--DEEKQHNQSKFYEIQQACELLSNKHAKRRQKNQ 376 (379)
Q Consensus 306 ~~~d~Y~vLGv~~~a--s~~eIkkaYRkla~~~HPDk~~~--~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~~ 376 (379)
+..|||++||++++. +.++|+++||++++++|||+..+ +.+++.+.+.+..||+||++|+||.+|+.|+-+
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~ 76 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLA 76 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 568999999999984 68999999999999999999873 345667889999999999999999999999854
No 56
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.39 E-value=9.9e-13 Score=119.97 Aligned_cols=70 Identities=20% Similarity=0.338 Sum_probs=61.6
Q ss_pred ccchhhhcccCCC--CCHHHHHHHHHHHHHHhCCCCCCC--hhHhHHHHHHHHHHHHHHHHcCChhHHHHHhhh
Q psy8728 307 EQNAFKVLGLAHT--ARQSEINSACRHLSVKYHPDKAKS--DEEKQHNQSKFYEIQQACELLSNKHAKRRQKNQ 376 (379)
Q Consensus 307 ~~d~Y~vLGv~~~--as~~eIkkaYRkla~~~HPDk~~~--~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~~ 376 (379)
..|||++|||+++ ++..+|+++||++++++|||+..+ +.+++.+.+.+..||+||++|+||.+|+.|.-+
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~ 78 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH 78 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 4799999999996 578999999999999999999863 445566778899999999999999999999853
No 57
>KOG0720|consensus
Probab=99.39 E-value=4.1e-13 Score=135.54 Aligned_cols=74 Identities=18% Similarity=0.276 Sum_probs=66.9
Q ss_pred HhcCCCCC-ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhhh
Q psy8728 299 VELGDPFG-EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKNQ 376 (379)
Q Consensus 299 ~~~~~~~~-~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~~ 376 (379)
.+++.... ..|+|.+|||++++++++|||.||++|+..||||+..+ .|+|.|+.++.|||+|+|+.+|+.||.+
T Consensus 225 adrl~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~----~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 225 ADRLSRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIP----RAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred HHhhhhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCCh----hHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 34444433 79999999999999999999999999999999999966 9999999999999999999999999964
No 58
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.32 E-value=2.1e-12 Score=109.92 Aligned_cols=55 Identities=29% Similarity=0.500 Sum_probs=49.3
Q ss_pred CCCccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcC
Q psy8728 304 PFGEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLS 365 (379)
Q Consensus 304 ~~~~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLs 365 (379)
.+...++|++|||++++|.+|||++||++++++|||+.+++ +.|++|++||++|.
T Consensus 61 ~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~-------~~~~kIneAyevL~ 115 (116)
T PTZ00100 61 PMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGST-------YIASKVNEAKDLLL 115 (116)
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHHh
Confidence 44568999999999999999999999999999999996543 67899999999996
No 59
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.31 E-value=2.3e-12 Score=124.74 Aligned_cols=64 Identities=34% Similarity=0.443 Sum_probs=57.1
Q ss_pred CCCccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCC----ChhHhHHHHHHHHHHHHHHHHcCCh
Q psy8728 304 PFGEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAK----SDEEKQHNQSKFYEIQQACELLSNK 367 (379)
Q Consensus 304 ~~~~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~----~~~~~~~a~e~f~~I~eAYevLsdp 367 (379)
..+..|+|++|||++++|.+|||++||+|++++|||+.. +++.++.++++|++|++||++|++.
T Consensus 196 ~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 196 GPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 355689999999999999999999999999999999964 3556688999999999999999864
No 60
>KOG0722|consensus
Probab=99.29 E-value=2e-12 Score=122.25 Aligned_cols=68 Identities=31% Similarity=0.544 Sum_probs=63.7
Q ss_pred CCCccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 304 PFGEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 304 ~~~~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
-++.+|.|+||||.++++..||.||||+|++++|||+++++ ++.+.|+.|..|||+|.|...|..||-
T Consensus 29 YCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~----e~k~~F~~iAtayeilkd~e~rt~ydy 96 (329)
T KOG0722|consen 29 YCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDP----ESKKLFVKIATAYEILKDNETRTQYDY 96 (329)
T ss_pred cccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCc----hhhhhhhhhhcccccccchhhHHhHHH
Confidence 47889999999999999999999999999999999999988 445999999999999999999999984
No 61
>KOG0714|consensus
Probab=99.19 E-value=1.7e-11 Score=116.53 Aligned_cols=68 Identities=37% Similarity=0.626 Sum_probs=61.8
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhhh
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQKNQ 376 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~~ 376 (379)
..|+|++|||+++|+.+||++|||++++++|||+++.+ +..++++|++|.+||++|+||.+|..||+.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~--~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~ 69 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSP--KEVAEAKFKEIAEAYEVLSDPKKRKIYDQY 69 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCc--hhhHHHHHhhhhccccccCCHHHhhhcccc
Confidence 47999999999999999999999999999999997755 556666999999999999999999999974
No 62
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.15 E-value=1e-10 Score=106.49 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=62.7
Q ss_pred cchhhhcccCCC--CCHHHHHHHHHHHHHHhCCCCCC--ChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhhh
Q psy8728 308 QNAFKVLGLAHT--ARQSEINSACRHLSVKYHPDKAK--SDEEKQHNQSKFYEIQQACELLSNKHAKRRQKNQ 376 (379)
Q Consensus 308 ~d~Y~vLGv~~~--as~~eIkkaYRkla~~~HPDk~~--~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~~ 376 (379)
.|||++||+|+. .+..+++++||++.+++|||+.. ++.+++.+.+....||+||.+|+||.+|+.|--+
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~ 74 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIA 74 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHH
Confidence 589999999997 68999999999999999999975 5667788899999999999999999999999643
No 63
>PHA02624 large T antigen; Provisional
Probab=99.12 E-value=6e-11 Score=125.08 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=56.6
Q ss_pred CccchhhhcccCCCC--CHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHH
Q psy8728 306 GEQNAFKVLGLAHTA--RQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQ 373 (379)
Q Consensus 306 ~~~d~Y~vLGv~~~a--s~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~y 373 (379)
..+++|++|||+++| +.+|||+|||++++++|||++++ +++|++|++||++|+|+.+|.+|
T Consensus 9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd-------eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD-------EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc-------HHHHHHHHHHHHHHhcHHHhhhc
Confidence 357899999999999 99999999999999999999654 37999999999999999999998
No 64
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.11 E-value=8.1e-11 Score=118.77 Aligned_cols=68 Identities=29% Similarity=0.555 Sum_probs=64.4
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCC--hhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKS--DEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 308 ~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~--~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
-|+|+|||++.+++..+||++||+|++++||||.++ ++.|++.+++.++|++||+.|+|.+.|..|-+
T Consensus 98 fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~ 167 (610)
T COG5407 98 FDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLN 167 (610)
T ss_pred CChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 589999999999999999999999999999999874 67999999999999999999999999999865
No 65
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.97 E-value=1.3e-09 Score=97.80 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCC--ChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhhhc
Q psy8728 320 ARQSEINSACRHLSVKYHPDKAK--SDEEKQHNQSKFYEIQQACELLSNKHAKRRQKNQR 377 (379)
Q Consensus 320 as~~eIkkaYRkla~~~HPDk~~--~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~~~ 377 (379)
.+.++|+++||++++++|||+.. ++.+++.+.+.+..||+||++|+||.+|+.|.-..
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l 62 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSL 62 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 46789999999999999999965 34456778999999999999999999999998643
No 66
>KOG1150|consensus
Probab=98.84 E-value=1.9e-08 Score=92.50 Aligned_cols=66 Identities=30% Similarity=0.473 Sum_probs=59.8
Q ss_pred CccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHHHHH
Q psy8728 306 GEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRRQ 373 (379)
Q Consensus 306 ~~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR~~y 373 (379)
=+.|+|+||.|+|..+.++||+.||+|+...|||||+++ ++.|+..|--+.+||..|-|+..|.+-
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd--~~rAqkAFdivkKA~k~l~n~~~rkr~ 116 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDD--AERAQKAFDIVKKAYKLLENDKIRKRC 116 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCccc--HHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 468999999999999999999999999999999998754 578999999999999999999866543
No 67
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=4.7e-08 Score=93.59 Aligned_cols=71 Identities=25% Similarity=0.411 Sum_probs=61.1
Q ss_pred CCCCccchhhhcccCC---CCCHHHHHHHHHHHHHHhCCCCCC--ChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhhh
Q psy8728 303 DPFGEQNAFKVLGLAH---TARQSEINSACRHLSVKYHPDKAK--SDEEKQHNQSKFYEIQQACELLSNKHAKRRQKNQ 376 (379)
Q Consensus 303 ~~~~~~d~Y~vLGv~~---~as~~eIkkaYRkla~~~HPDk~~--~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~~ 376 (379)
.+.+..|.|.+||++. .++..+|.++.++.+.+||||+.. ++ ....+.|+.|+.||++|+|+.+|..||..
T Consensus 38 k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~---~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 38 KNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGN---KGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred hhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCC---CCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence 3456689999999986 578999999999999999999973 22 24578999999999999999999999963
No 68
>KOG1789|consensus
Probab=98.32 E-value=1.6e-06 Score=95.18 Aligned_cols=59 Identities=29% Similarity=0.421 Sum_probs=50.0
Q ss_pred cCCCCCccchhhhcccCCCC----CHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcC
Q psy8728 301 LGDPFGEQNAFKVLGLAHTA----RQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLS 365 (379)
Q Consensus 301 ~~~~~~~~d~Y~vLGv~~~a----s~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLs 365 (379)
........++|+||.++.+- ..+.||++|+||+.+||||||+ +..++|..+|+|||.|+
T Consensus 1274 KP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP------EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1274 KPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP------EGREMFERVNKAYELLS 1336 (2235)
T ss_pred CCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc------hHHHHHHHHHHHHHHHH
Confidence 33446778999999998642 4588999999999999999976 44799999999999998
No 69
>COG2314 XynA Predicted membrane protein [Function unknown]
Probab=98.26 E-value=1e-06 Score=72.72 Aligned_cols=57 Identities=30% Similarity=0.310 Sum_probs=43.1
Q ss_pred cccCchHHHHHHHHHHhhhcccceeecCCchhHHHHHHhhhhhhhHHHHHHHHHhhHHHHH
Q psy8728 26 VHAEKSLYITYLLWLVGGIFGVHHFYLGRDIQGFLWWCTLGGYFGFGWLRDIFHIQNYVAD 86 (379)
Q Consensus 26 ~~~~k~~~~a~~l~~~~G~~G~HrfYlg~~~~g~~~~~t~gg~~~i~~~~D~~~i~~~v~~ 86 (379)
+.+++++.++.++++++|++|+||||+|+.++|+++++.. ++++.++++.|+.....
T Consensus 4 ~~~~~~k~~~~~~~~~~g~~G~hkfYlg~~~~gi~~~~~~----~~~i~~i~~~i~~~~~~ 60 (95)
T COG2314 4 PKPKKNKLIAGLLAALFGIFGLHKFYLGQGGKGILTLLLN----WTGIFLILLLIGYLGVL 60 (95)
T ss_pred chhhhhHHHHHHHHHHhcccchHHHHcCCchhhhHHHHHH----hhHHHHHHHHHHHHHHh
Confidence 3467788888888888889999999999999999966665 45555556666555443
No 70
>KOG0723|consensus
Probab=98.26 E-value=1.5e-06 Score=72.53 Aligned_cols=58 Identities=24% Similarity=0.377 Sum_probs=52.8
Q ss_pred CCCccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChh
Q psy8728 304 PFGEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKH 368 (379)
Q Consensus 304 ~~~~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~ 368 (379)
.+.++++-.||||+++++.+.||.++|+....+|||+..+| ..-.+||||+++|....
T Consensus 52 kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP-------YlAsKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 52 KMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP-------YLASKINEAKDLLEGTS 109 (112)
T ss_pred ccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH-------HHHHHHHHHHHHHhccc
Confidence 47788999999999999999999999999999999999988 66789999999997543
No 71
>KOG0568|consensus
Probab=98.01 E-value=6.6e-06 Score=77.54 Aligned_cols=56 Identities=25% Similarity=0.528 Sum_probs=49.8
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHH-HcCC
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACE-LLSN 366 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYe-vLsd 366 (379)
-.++|.+|||..+|+.+|++.+|.+|++++|||...+. ...++|.+|.+||. +|+.
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~----adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEE----ADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCcc----ccHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999997754 56788999999998 6653
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00054 Score=62.45 Aligned_cols=58 Identities=40% Similarity=0.469 Sum_probs=52.1
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCC----ChhHhHHHHHHHHHHHHHHHHc
Q psy8728 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAK----SDEEKQHNQSKFYEIQQACELL 364 (379)
Q Consensus 307 ~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~----~~~~~~~a~e~f~~I~eAYevL 364 (379)
+.++|++||++..++..+|+++||++....|||+.. ..+.-+.+++++++|++||+.+
T Consensus 112 ~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred chhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 389999999999999999999999999999999965 3556689999999999999854
No 73
>KOG3192|consensus
Probab=97.49 E-value=0.00015 Score=64.71 Aligned_cols=71 Identities=17% Similarity=0.285 Sum_probs=57.2
Q ss_pred CCccchhhhcccCCC--CCHHHHHHHHHHHHHHhCCCCCC--ChhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 305 FGEQNAFKVLGLAHT--ARQSEINSACRHLSVKYHPDKAK--SDEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 305 ~~~~d~Y~vLGv~~~--as~~eIkkaYRkla~~~HPDk~~--~~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
....++|+++|.... .+++.++-.|....++.|||+.. ...+...|.+...++++||.+|.||-+|++|--
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345789999987654 35666777999999999999965 222335788999999999999999999999964
No 74
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0031 Score=57.46 Aligned_cols=66 Identities=20% Similarity=0.323 Sum_probs=52.5
Q ss_pred hhhhcccCCCC--CHHHHHHHHHHHHHHhCCCCCCC--hhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 310 AFKVLGLAHTA--RQSEINSACRHLSVKYHPDKAKS--DEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 310 ~Y~vLGv~~~a--s~~eIkkaYRkla~~~HPDk~~~--~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
+...+|.++.+ ..+.++..|+++.+.+|||+... ...+..+.+.+..++.||.+|.||-.|..|--
T Consensus 3 ~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 3 GFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred cccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 44555666554 45668999999999999999873 33445578899999999999999999999853
No 75
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=96.11 E-value=0.0079 Score=52.39 Aligned_cols=60 Identities=20% Similarity=0.176 Sum_probs=43.6
Q ss_pred CCCccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCChhHH
Q psy8728 304 PFGEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370 (379)
Q Consensus 304 ~~~~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsdp~kR 370 (379)
.+...++.+||||++..+.++|.+.|.+|-..++|++.++. ..-.+|..|.|.|..+.+.
T Consensus 54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSf-------YLQSKV~rAKErl~~El~~ 113 (127)
T PF03656_consen 54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSF-------YLQSKVFRAKERLEQELKE 113 (127)
T ss_dssp ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-H-------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCH-------HHHHHHHHHHHHHHHHHHH
Confidence 46667999999999999999999999999999999998765 6667788888888766543
No 76
>KOG0431|consensus
Probab=95.48 E-value=0.018 Score=60.05 Aligned_cols=50 Identities=24% Similarity=0.331 Sum_probs=39.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHhCCCCCC----ChhHhHHHHHHHHHHHHHHHHcC
Q psy8728 316 LAHTARQSEINSACRHLSVKYHPDKAK----SDEEKQHNQSKFYEIQQACELLS 365 (379)
Q Consensus 316 v~~~as~~eIkkaYRkla~~~HPDk~~----~~~~~~~a~e~f~~I~eAYevLs 365 (379)
+..=.+.++|||+|||.++..||||.. +.++|-.+++.|-.+++|+..-.
T Consensus 396 ltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 396 LTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN 449 (453)
T ss_pred hhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 334458999999999999999999986 34566778888888888876543
No 77
>PF13446 RPT: A repeated domain in UCH-protein
Probab=92.87 E-value=0.3 Score=36.76 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=35.6
Q ss_pred CccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHH
Q psy8728 306 GEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQ 359 (379)
Q Consensus 306 ~~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~e 359 (379)
+-.++|+.||++++.+.+.|-.+|+.... .+|..++...+.++.|.+
T Consensus 3 ~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-------~~P~~~~~~r~AL~~Ia~ 49 (62)
T PF13446_consen 3 DVEEAYEILGIDEDTDDDFIISAFQSKVN-------DDPSQKDTLREALRVIAE 49 (62)
T ss_pred CHHHHHHHhCcCCCCCHHHHHHHHHHHHH-------cChHhHHHHHHHHHHHHH
Confidence 45689999999999999999999999877 234344555666666554
No 78
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=87.95 E-value=1.2 Score=38.08 Aligned_cols=51 Identities=24% Similarity=0.303 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCC-ChhHhHHHHHHHHHHHHHHHHcCChh
Q psy8728 318 HTARQSEINSACRHLSVKYHPDKAK-SDEEKQHNQSKFYEIQQACELLSNKH 368 (379)
Q Consensus 318 ~~as~~eIkkaYRkla~~~HPDk~~-~~~~~~~a~e~f~~I~eAYevLsdp~ 368 (379)
+..+..+++++-|..-++.|||... .|++++..++-++.++.--+.|..+.
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 3457789999999999999999765 67788888888999998888887754
No 79
>KOG0724|consensus
Probab=78.28 E-value=2.3 Score=42.27 Aligned_cols=57 Identities=23% Similarity=0.433 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC-hhHhHHHHHHHHHHHHHHHHcCChhHHHHHhh
Q psy8728 319 TARQSEINSACRHLSVKYHPDKAKS-DEEKQHNQSKFYEIQQACELLSNKHAKRRQKN 375 (379)
Q Consensus 319 ~as~~eIkkaYRkla~~~HPDk~~~-~~~~~~a~e~f~~I~eAYevLsdp~kR~~yd~ 375 (379)
.++..+++.+|++.+...|||+... .......++.+++|.+||+++++..+|...|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence 3577899999999999999998642 11223567889999999999998665544443
No 80
>PLN02922 prenyltransferase
Probab=74.26 E-value=98 Score=30.90 Aligned_cols=53 Identities=8% Similarity=-0.088 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCccc-------C---CCChHHHHHHHHHHHhh-hheeeeecC
Q psy8728 112 IRFTGMTVVAYLWSTVVSMAIPEEDI-------G---GLPWKYLHFLLPIACAL-GVWSVGNIG 164 (379)
Q Consensus 112 ~rf~~~~~vg~~~G~la~~aip~~~~-------~---~~~~~~~~~~~plaval-GV~~Vgn~G 164 (379)
-|-+|++.++..||.++-.+.--... + ..++..+...+|++... +|.++-|+-
T Consensus 148 y~gLGE~~v~i~fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~r 211 (315)
T PLN02922 148 YKGLGEPLCFAAFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFH 211 (315)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCc
Confidence 36789999999999887654211100 0 13344455666666544 355554443
No 81
>TIGR03747 conj_TIGR03747 integrating conjugative element membrane protein, PFL_4697 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=73.09 E-value=18 Score=34.71 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=41.6
Q ss_pred hhhccCCCCCCchhhHHHHHHHHHHHHHHHHhhcCCcccCCCChHHHHHHHHHHHhhhh
Q psy8728 99 HNLRSYKYPPFSTIRFTGMTVVAYLWSTVVSMAIPEEDIGGLPWKYLHFLLPIACALGV 157 (379)
Q Consensus 99 ~~~~~~~~p~~~~~rf~~~~~vg~~~G~la~~aip~~~~~~~~~~~~~~~~plavalGV 157 (379)
++-...+..||--+|--..+.=.++...+..+++|.. ..+..+++|.|+.+|+
T Consensus 168 Rr~gaGrESsfvyH~Akr~~~p~~~~p~~lYLslP~s------v~P~~illP~a~llg~ 220 (233)
T TIGR03747 168 RRFGAGRESSFVYHHAKRFVKPLMILPWVLYLSLPIS------IYPNLILLPAALLLGL 220 (233)
T ss_pred HHhcCCccCcHHHHHHHHHHHHHHHHHHHHHHhcccc------cChhHHHHHHHHHHHH
Confidence 4555556688888777777777777888999999987 4667888999999885
No 82
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=72.30 E-value=35 Score=34.06 Aligned_cols=49 Identities=18% Similarity=0.275 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccCCCChHHHHHHHHHHHhhhheeeee
Q psy8728 114 FTGMTVVAYLWSTVVSMAIPEEDIGGLPWKYLHFLLPIACALGVWSVGN 162 (379)
Q Consensus 114 f~~~~~vg~~~G~la~~aip~~~~~~~~~~~~~~~~plavalGV~~Vgn 162 (379)
-+|++++|..||.++-.+.=-.....+++.-+...+|.++..+.-++.|
T Consensus 148 gLGEi~~~vffG~l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aN 196 (303)
T COG1575 148 GLGEIFVGVFFGPLIVLGAYYIQTGRLSWAILLPSLPVGILIANILLAN 196 (303)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhc
Confidence 5899999999999877655433335566777778888888776444444
No 83
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=69.58 E-value=42 Score=32.99 Aligned_cols=53 Identities=6% Similarity=-0.075 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCcccCCCChHHHHHHHHHHHhh-hheeeeecC
Q psy8728 112 IRFTGMTVVAYLWSTVVSMAIPEEDIGGLPWKYLHFLLPIACAL-GVWSVGNIG 164 (379)
Q Consensus 112 ~rf~~~~~vg~~~G~la~~aip~~~~~~~~~~~~~~~~plaval-GV~~Vgn~G 164 (379)
-|-+|++.++..+|.++..+.---....+++..+...+|++... ++..+-|+-
T Consensus 131 y~gLGE~~v~l~~G~l~v~g~~yvqt~~~~~~~~l~sl~~gl~~~~iL~~Nn~r 184 (285)
T TIGR02235 131 YQGLGEPICWLCFGPLAIAAALYAQSQSFSLIPWKASILVGLATTLILFCSHFH 184 (285)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhCCcCcHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 35689999999999888766533333456777788888888644 466666654
No 84
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.74 E-value=5.4 Score=33.95 Aligned_cols=45 Identities=18% Similarity=0.131 Sum_probs=32.8
Q ss_pred chhhHHHHHHHHHHHHHHHHhhcCCcccCCCChHHHHHHHHHHHhhhheee
Q psy8728 110 STIRFTGMTVVAYLWSTVVSMAIPEEDIGGLPWKYLHFLLPIACALGVWSV 160 (379)
Q Consensus 110 ~~~rf~~~~~vg~~~G~la~~aip~~~~~~~~~~~~~~~~plavalGV~~V 160 (379)
..+.|++-++||..+|++. |-.+|-.+-++++++-++.++||..|
T Consensus 48 lssefIsGilVGa~iG~ll------D~~agTsPwglIv~lllGf~AG~lnv 92 (116)
T COG5336 48 LSSEFISGILVGAGIGWLL------DKFAGTSPWGLIVFLLLGFGAGVLNV 92 (116)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888876 44445445678889999999997654
No 85
>PHA03029 hypothetical protein; Provisional
Probab=66.04 E-value=5.2 Score=31.82 Aligned_cols=46 Identities=30% Similarity=0.606 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHh-----hcCCccc---CCC--ChHHHHHHHHHHHhhh-----heeeeecC
Q psy8728 119 VVAYLWSTVVSM-----AIPEEDI---GGL--PWKYLHFLLPIACALG-----VWSVGNIG 164 (379)
Q Consensus 119 ~vg~~~G~la~~-----aip~~~~---~~~--~~~~~~~~~plavalG-----V~~Vgn~G 164 (379)
++|+.||++.++ |+.+... .|+ -+.|+.|++|++.+.| ||.|-|.-
T Consensus 23 ~igiiwg~llsi~k~raai~qnirsrrkg~ywflnf~fwllp~al~a~fyffsiw~imnpq 83 (92)
T PHA03029 23 IIGIIWGFLLSINKIRAAIDQNIRSRRKGLYWFLNFLFWLLPFALAAAFYFFSIWFIMNPQ 83 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhheeccc
Confidence 678889988764 5555432 232 2467999999999888 77776653
No 86
>PF14348 DUF4400: Domain of unknown function (DUF4400)
Probab=65.27 E-value=29 Score=32.03 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHhhHHHHHHhhchhhHHHHhhhhccCCCCCCchhhHHHHHHHHHHHHHHHHhhcCCcccCCCChHHHHHH
Q psy8728 69 FGFGWLRDIFHIQNYVADANKDRDYLDKFNHNLRSYKYPPFSTIRFTGMTVVAYLWSTVVSMAIPEEDIGGLPWKYLHFL 148 (379)
Q Consensus 69 ~~i~~~~D~~~i~~~v~~~n~~~~~~~~~~~~~~~~~~p~~~~~rf~~~~~vg~~~G~la~~aip~~~~~~~~~~~~~~~ 148 (379)
+++-.++|.+ +-+.+|+++-.. ..|+--.+-.-.+....+...+..+++|.. .....++
T Consensus 121 ~~~~~~vDGl-~~R~iRr~~~g~--------------eSp~~~h~a~~~~~~~~~~~~~lyL~lP~~------i~P~~~~ 179 (198)
T PF14348_consen 121 FALAALVDGL-VRRDIRRFGFGR--------------ESPFVYHHAKRSVIPLLILPWVLYLSLPFS------IPPNLVP 179 (198)
T ss_pred HHHHHHHHHH-HHHHHHHHcCCC--------------CCHHHHHHHHHHHHHHHHHHHHHHHHcccc------cChHHHH
Confidence 4566666665 333444444333 355555544444444445555888999987 3344455
Q ss_pred HHHHHhhhh
Q psy8728 149 LPIACALGV 157 (379)
Q Consensus 149 ~plavalGV 157 (379)
+|.++.+|+
T Consensus 180 l~~a~llg~ 188 (198)
T PF14348_consen 180 LPAALLLGL 188 (198)
T ss_pred HHHHHHHHH
Confidence 577777764
No 87
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=53.64 E-value=1.5e+02 Score=29.52 Aligned_cols=19 Identities=5% Similarity=-0.150 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q psy8728 113 RFTGMTVVAYLWSTVVSMA 131 (379)
Q Consensus 113 rf~~~~~vg~~~G~la~~a 131 (379)
|-+|++.+|..+|.++-.+
T Consensus 140 ~gLGe~~v~i~~G~~~v~g 158 (317)
T PRK13387 140 MPLGEIFSGLTMGFGIFLL 158 (317)
T ss_pred CccHHHHHHHHHHHHHHHH
Confidence 4589999999988765433
No 88
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=52.59 E-value=1.5e+02 Score=29.41 Aligned_cols=52 Identities=8% Similarity=-0.055 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCcccCCCChHHHHHHHHHHHhh-hheeeeec
Q psy8728 112 IRFTGMTVVAYLWSTVVSMAIPEEDIGGLPWKYLHFLLPIACAL-GVWSVGNI 163 (379)
Q Consensus 112 ~rf~~~~~vg~~~G~la~~aip~~~~~~~~~~~~~~~~plaval-GV~~Vgn~ 163 (379)
-|-+|++.++..||.++-.+.---....+++..+...+|++... .|..+=|+
T Consensus 144 y~gLGE~~v~l~~G~l~v~g~~yv~t~~~~~~~~~~sl~~gll~~~IL~~Nn~ 196 (304)
T PRK07419 144 YQGLGEPLCFLAFGPLAVAAALYSQTPSWSLIPLAASIILGLATSLILFCSHF 196 (304)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 36689999999999888766543333456666677777776433 35545443
No 89
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=52.00 E-value=3.7e+02 Score=30.01 Aligned_cols=84 Identities=11% Similarity=-0.022 Sum_probs=40.2
Q ss_pred hhccCCCCCCchhhHHHHHHHHHHHHHHHHhhcCCcccCCCChHHHHHHHHHHHhhhheeeeecCcccchHHHHHHHHHh
Q psy8728 100 NLRSYKYPPFSTIRFTGMTVVAYLWSTVVSMAIPEEDIGGLPWKYLHFLLPIACALGVWSVGNIGHETGTIWWCLAAAYA 179 (379)
Q Consensus 100 ~~~~~~~p~~~~~rf~~~~~vg~~~G~la~~aip~~~~~~~~~~~~~~~~plavalGV~~Vgn~G~~~~~l~~~l~aa~~ 179 (379)
+++.+-.|.-...|...=+.++..+|.+....++.+. | .| +++...+.+---......|-.-.+-.|++++++
T Consensus 369 ~l~~~l~~~S~~fRhAlRlalal~~a~~i~~~l~l~~--g-yW----i~LTv~~V~qP~~~~T~~R~~~Ri~GTllG~~l 441 (704)
T TIGR01666 369 RIFSHFTFESPLFRHAVRLSIVLFLGYAIIQFFGFNL--G-YW----ILLTTLFVCQPNYSATKVRLRQRIIGTLLGVVI 441 (704)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHhCCCC--C-ch----HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444544455566556666666655554544441 1 12 222222222111111222333445577777777
Q ss_pred hhchhhcccch
Q psy8728 180 CYPVYWYVDES 190 (379)
Q Consensus 180 ~~~~~~~~~e~ 190 (379)
..++.++....
T Consensus 442 g~~ll~l~p~~ 452 (704)
T TIGR01666 442 GSPLLYFNPSL 452 (704)
T ss_pred HHHHHHHhccH
Confidence 77777777443
No 90
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=51.89 E-value=35 Score=27.20 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=24.9
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHHHhCCC
Q psy8728 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPD 339 (379)
Q Consensus 308 ~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPD 339 (379)
+|--+++|++|-+|.+||+.+-++.+++..--
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGt 34 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGT 34 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCC
Confidence 34457889999999999999987777766433
No 91
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=50.63 E-value=1.1e+02 Score=30.00 Aligned_cols=59 Identities=27% Similarity=0.345 Sum_probs=36.7
Q ss_pred CCCCchh-hHHHHHHHHHHHHHHHHhhcCCcccCCCChHHHHHHHHHHHh-hhheeeeecC
Q psy8728 106 YPPFSTI-RFTGMTVVAYLWSTVVSMAIPEEDIGGLPWKYLHFLLPIACA-LGVWSVGNIG 164 (379)
Q Consensus 106 ~p~~~~~-rf~~~~~vg~~~G~la~~aip~~~~~~~~~~~~~~~~plava-lGV~~Vgn~G 164 (379)
.||+... |.+|++.+++.+|.++-++.---....+++..+...+|++.. .++..+.|+-
T Consensus 134 ~~P~~lky~glGe~~v~~~~g~~~vlg~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~~~ 194 (296)
T PRK05951 134 GPPFFLKYRWLGEHLVFYAWSHMLVMGLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNNLR 194 (296)
T ss_pred CCCcccCCCCchHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 3665455 899999999999966655443222233456666667777643 3466666654
No 92
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=50.58 E-value=71 Score=25.55 Aligned_cols=57 Identities=16% Similarity=0.088 Sum_probs=39.2
Q ss_pred hhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHHHHHcCC
Q psy8728 310 AFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSN 366 (379)
Q Consensus 310 ~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eAYevLsd 366 (379)
--.+.|+.|.+|.+||+.|=.+.++|..=-..+.....+.-+..-.+|..+-..|.|
T Consensus 5 I~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL~ 61 (78)
T PF10041_consen 5 IKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLLD 61 (78)
T ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 345668889999999999999988888655544433333444455667776666655
No 93
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=49.24 E-value=4.2e+02 Score=29.58 Aligned_cols=100 Identities=10% Similarity=-0.010 Sum_probs=47.2
Q ss_pred HhhhhccCCCCCCchhhHHHHHHHHHHHHHHHHhhcCCcccCCCChHHHHHHHHHHHhhhheeeeecCcccchHHHHHHH
Q psy8728 97 FNHNLRSYKYPPFSTIRFTGMTVVAYLWSTVVSMAIPEEDIGGLPWKYLHFLLPIACALGVWSVGNIGHETGTIWWCLAA 176 (379)
Q Consensus 97 ~~~~~~~~~~p~~~~~rf~~~~~vg~~~G~la~~aip~~~~~~~~~~~~~~~~plavalGV~~Vgn~G~~~~~l~~~l~a 176 (379)
...+++++-.|.-...|...-+.++..+|......++... .+.+ ++.+.+.+--.......|-...+-.|+++
T Consensus 368 ~~~~l~~~l~~~S~~fRhAlR~ala~~~a~~i~~~l~l~~------gyWi-~lTv~~V~qP~~~~T~~R~~~Ri~GTl~G 440 (701)
T TIGR01667 368 ILPRLKSHLTPESPLFRHAVRLSLVVMLGYAILMGTALHL------GYWI-LLTTLFVCQPNYGATRLRLVQRIIGTVVG 440 (701)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCc------chHH-HHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 3344555555555566777777666666666555444431 1111 22222221111111112233334467777
Q ss_pred HHhhhchhhcccchhHHHHHHHHHHHh
Q psy8728 177 AYACYPVYWYVDESTACTVMVLASALA 203 (379)
Q Consensus 177 a~~~~~~~~~~~e~~~~l~~~l~aa~~ 203 (379)
++++.++.++.+.+...+++.+++.++
T Consensus 441 ~llg~~l~~l~p~~~~~l~l~v~~~~~ 467 (701)
T TIGR01667 441 LVIGVALHFLIPSLEGQLTLMVITGVA 467 (701)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 777777766664333333333434443
No 94
>COG5454 Predicted secreted protein [Function unknown]
Probab=48.49 E-value=62 Score=26.29 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=44.5
Q ss_pred hhhhHHHHHHHHHhhHHHHHHhhchhhHHHHhhhhccCCCCCCc--h------hhHHHHHHHHHHHHHHHHhhcCCcccC
Q psy8728 67 GYFGFGWLRDIFHIQNYVADANKDRDYLDKFNHNLRSYKYPPFS--T------IRFTGMTVVAYLWSTVVSMAIPEEDIG 138 (379)
Q Consensus 67 g~~~i~~~~D~~~i~~~v~~~n~~~~~~~~~~~~~~~~~~p~~~--~------~rf~~~~~vg~~~G~la~~aip~~~~~ 138 (379)
-+|.|||.+=+..+|--+|...|+-+- -....+..|-. . .-.+..+++|.|+|+.-..+...+.++
T Consensus 9 iyfiiWWtvLFavLP~g~Rtq~ee~dv------~lGtv~sAP~~p~~~R~vl~TT~~savi~gl~y~lt~~~g~~LddiP 82 (89)
T COG5454 9 IYFIIWWTVLFAVLPLGVRTQDEEGDV------TLGTVPSAPANPHLLRAVLRTTVASAVIFGLFYGLTHFLGYSLDDIP 82 (89)
T ss_pred HHHHHHHHHHHHHhcccccchhhcCCC------CCCcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCccccc
Confidence 457899999899999988877765431 11112222221 1 224567899999999999888888544
Q ss_pred C
Q psy8728 139 G 139 (379)
Q Consensus 139 ~ 139 (379)
.
T Consensus 83 ~ 83 (89)
T COG5454 83 H 83 (89)
T ss_pred c
Confidence 3
No 95
>KOG1630|consensus
Probab=44.36 E-value=16 Score=35.60 Aligned_cols=89 Identities=19% Similarity=0.281 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhhhheeeeecCcccchHHH---HHHHHHhhhchhhcccchhHHHHHHHHHHHhhhhchhhhcc-CCCCc
Q psy8728 143 KYLHFLLPIACALGVWSVGNIGHETGTIWW---CLAAAYACYPVYWYVDESTACTVMVLASALAFDTLSKRWQT-KPKPR 218 (379)
Q Consensus 143 ~~~~~~~plavalGV~~Vgn~G~~~~~l~~---~l~aa~~~~~~~~~~~e~~~~l~~~l~aa~~~~~~~k~wr~-~~~~~ 218 (379)
.|++..-|+|+++||-.|+|+|- +|- +.++|=+.+-..|+- .++.|....=.+||-=+. ..-++
T Consensus 231 KFL~MggPLaiGlGvVFvssl~s----m~LPPtta~GA~LaSmslYGG--------LiLFS~FLLYDTQr~vk~ae~ypq 298 (336)
T KOG1630|consen 231 KFLNMGGPLAIGLGVVFVSSLGS----MFLPPTTALGAGLASMSLYGG--------LILFSGFLLYDTQRVVKSAEKYPQ 298 (336)
T ss_pred HHhhcCCCceeeeeeEehhhhhh----hhcCCchhhhhhhHHHHHhcc--------HHHHHHHHHHhHHHHHHHHHhCcc
Confidence 78999999999999999999986 552 233333334444555 344444443233332211 11111
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHH
Q psy8728 219 KRFLRRCLTIGACALLYSSLWGSYL 243 (379)
Q Consensus 219 ~~~~~r~~~l~~a~l~~~~l~~~~l 243 (379)
-.-+...-.+-.+..+|.++++..+
T Consensus 299 ~s~~~~~dPin~~msiymdvlnifi 323 (336)
T KOG1630|consen 299 YSEFPNYDPINACMSIYMDVLNIFI 323 (336)
T ss_pred hhccCCCCchHHHHHHHHHHHHHHH
Confidence 0111113356778888888888753
No 96
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=44.15 E-value=78 Score=32.60 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=58.7
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhchhhHHHHhhhhccCCCCCCchhhHHHHHHHHHHHHHHHHhhcCCccc
Q psy8728 58 GFLWWCTLGGYFGFGWLRDIFHIQNYVADANKDRDYLDKFNHNLRSYKYPPFSTIRFTGMTVVAYLWSTVVSMAIPEEDI 137 (379)
Q Consensus 58 g~~~~~t~gg~~~i~~~~D~~~i~~~v~~~n~~~~~~~~~~~~~~~~~~p~~~~~rf~~~~~vg~~~G~la~~aip~~~~ 137 (379)
+++|++. |+ ..+|+.=|..-+-.-+|+.-+... +-..+.+....+--|...-++.-++|+..|+.+..-++-..+
T Consensus 85 a~lWI~~-G~-if~GaVHD~~sl~~SvR~~G~Si~--~i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~~p- 159 (376)
T PF02554_consen 85 ALLWIVF-GC-IFAGAVHDYGSLMASVRHKGKSIG--EIAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFVNSP- 159 (376)
T ss_pred HHHHHHH-cc-HHHHHHHHHHHHhhhhcCCCccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh-
Confidence 4555554 35 679999999887766666555443 222333333333444555566667788888877776665543
Q ss_pred CCCChHHHHHHHHHHHhhhhee
Q psy8728 138 GGLPWKYLHFLLPIACALGVWS 159 (379)
Q Consensus 138 ~~~~~~~~~~~~plavalGV~~ 159 (379)
++ ..--.+.+|+|+.+|.+.
T Consensus 160 ~~--~~~~~~~I~~Ai~~G~~~ 179 (376)
T PF02554_consen 160 WA--ATSSLLFIPIAILFGLLV 179 (376)
T ss_pred hH--HHHHHHHHHHHHHHhHhh
Confidence 11 233567789999999883
No 97
>KOG3442|consensus
Probab=43.19 E-value=37 Score=29.66 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=34.2
Q ss_pred CCccchhhhcccCCCCCHHHHHHHHHHHHHHhCCCCCC
Q psy8728 305 FGEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAK 342 (379)
Q Consensus 305 ~~~~d~Y~vLGv~~~as~~eIkkaYRkla~~~HPDk~~ 342 (379)
...+++.+||+|++.-+.+||.+.|-.|-..+.+.|.+
T Consensus 56 iTlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGG 93 (132)
T KOG3442|consen 56 ITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGG 93 (132)
T ss_pred ccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCc
Confidence 55678899999999999999999999999999888766
No 98
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional
Probab=42.48 E-value=1.2e+02 Score=32.03 Aligned_cols=71 Identities=17% Similarity=0.317 Sum_probs=43.5
Q ss_pred hHHHHHHhhchhhHHHHhhhhccCCCCCCchhhHHHHHHHHHHHHHHHHhhcCCcccCCCChHHHHHHHHHHHhhhheee
Q psy8728 81 QNYVADANKDRDYLDKFNHNLRSYKYPPFSTIRFTGMTVVAYLWSTVVSMAIPEEDIGGLPWKYLHFLLPIACALGVWSV 160 (379)
Q Consensus 81 ~~~v~~~n~~~~~~~~~~~~~~~~~~p~~~~~rf~~~~~vg~~~G~la~~aip~~~~~~~~~~~~~~~~plavalGV~~V 160 (379)
..+.+.--......+-..+-++.-+. |+-. +..++.+|.+.++++|+. +|.-.-++...+|+.+++|+--.
T Consensus 90 a~yM~~iGa~~~lv~l~~~pl~~ir~-p~~~------l~~~~l~~~~~~~~i~Sa--~glg~~lm~~l~Pvl~~~Gv~~~ 160 (455)
T PRK10654 90 AAYMTHIGANDMVVKLASKPLQYINS-PYLL------MIAAYFVACLMSLAVSSA--TGLGVLLMATLFPVMVNVGISRG 160 (455)
T ss_pred HHHHhhcCchHHHHHHHHHHHhccCC-chhH------HHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHhCCCCHH
Confidence 33444333333333334444444444 3433 677888999999999999 45445556668899999885544
No 99
>PF12676 DUF3796: Protein of unknown function (DUF3796); InterPro: IPR024257 This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.
Probab=40.74 E-value=1.3e+02 Score=25.82 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=15.4
Q ss_pred HhhhcccceeecCCchhHHHHHHhh
Q psy8728 41 VGGIFGVHHFYLGRDIQGFLWWCTL 65 (379)
Q Consensus 41 ~~G~~G~HrfYlg~~~~g~~~~~t~ 65 (379)
|+|.+|..-|.-++......+++.+
T Consensus 12 flGflG~~~f~~~~~~~~~~fF~FF 36 (118)
T PF12676_consen 12 FLGFLGLWYFSTDNGSFLFYFFCFF 36 (118)
T ss_pred HHHHcchHHHhcCCccHHHHHHHHH
Confidence 5677787777666655553444444
No 100
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=39.21 E-value=3.1e+02 Score=25.39 Aligned_cols=108 Identities=18% Similarity=0.175 Sum_probs=67.3
Q ss_pred CCCCchhhHHHHHHHH-HHHHHHHHhhcCCcccCCCChHHHHHHHHHHHhhh-----heeeeecCcccchHHHHHHHHHh
Q psy8728 106 YPPFSTIRFTGMTVVA-YLWSTVVSMAIPEEDIGGLPWKYLHFLLPIACALG-----VWSVGNIGHETGTIWWCLAAAYA 179 (379)
Q Consensus 106 ~p~~~~~rf~~~~~vg-~~~G~la~~aip~~~~~~~~~~~~~~~~plavalG-----V~~Vgn~G~~~~~l~~~l~aa~~ 179 (379)
...|+.+|+=-.|++| ++.|..|+.|+--. ..|+-++-- .|++|| +...+.-+++
T Consensus 57 ~s~F~Lsr~eR~vlF~~ClLGa~ac~a~~~f------------mfpVl~lkPrkFiLlwTmgs-------lLfvl~Fg~l 117 (201)
T COG5102 57 SSEFGLSRFERAVLFSACLLGAGACSAFLYF------------MFPVLRLKPRKFILLWTMGS-------LLFVLMFGFL 117 (201)
T ss_pred cchhhHHHHHHHHHHHHHHhhhHHHHHHHHH------------HHHHHhcCccceeeehhHHH-------HHHHHHHHHH
Confidence 3458999999999995 46898887764322 345544321 566543 6667777777
Q ss_pred hhchhhcc--------cchhHHHHHHHHHHHhhhhchhhhccCCCCccchhhhHHHHHHHHHHHHHHHHHHHhhh
Q psy8728 180 CYPVYWYV--------DESTACTVMVLASALAFDTLSKRWQTKPKPRKRFLRRCLTIGACALLYSSLWGSYLYFN 246 (379)
Q Consensus 180 ~~~~~~~~--------~e~~~~l~~~l~aa~~~~~~~k~wr~~~~~~~~~~~r~~~l~~a~l~~~~l~~~~ly~n 246 (379)
..+..|+. .-..|...+.+...++. -+.|+ -+..++.|.+...+.+.+.+=|-
T Consensus 118 ~Gf~ayl~~Lts~erlp~s~~ff~t~l~Tiy~~-~k~k~-------------t~L~i~f~~l~vvsfi~y~itff 178 (201)
T COG5102 118 LGFRAYLEGLTSKERLPHSSWFFGTTLLTIYVV-LKYKR-------------TLLNIAFCFLQVVSFIMYSITFF 178 (201)
T ss_pred HhHHHHHHhhhhhhccchhHHHHHHHHHHHHHH-HHhhh-------------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777776 33456655666555555 11111 34467777777778777765443
No 101
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=39.02 E-value=2.4e+02 Score=27.60 Aligned_cols=52 Identities=10% Similarity=0.095 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCcccCCCChHHHHHHHHHHHhh-hheeeeecC
Q psy8728 113 RFTGMTVVAYLWSTVVSMAIPEEDIGGLPWKYLHFLLPIACAL-GVWSVGNIG 164 (379)
Q Consensus 113 rf~~~~~vg~~~G~la~~aip~~~~~~~~~~~~~~~~plaval-GV~~Vgn~G 164 (379)
|=+|++.++..||.++-.+.---....+++..+...+|++... .|..+-|+-
T Consensus 135 ~gLGE~~v~i~~G~l~v~g~~yvq~~~~~~~~ll~sl~~g~l~~~il~~Nn~~ 187 (284)
T TIGR00751 135 AGLGDISVLVFFGPLAVLGTQYLQAHRVDWVGILPAVATGLLACAVLNINNLR 187 (284)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 5579999999999887655422122345666666666665433 455555554
No 102
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=39.01 E-value=64 Score=27.06 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=14.8
Q ss_pred CcccCCCChHHHHHHHHHHHhhhhe
Q psy8728 134 EEDIGGLPWKYLHFLLPIACALGVW 158 (379)
Q Consensus 134 ~~~~~~~~~~~~~~~~plavalGV~ 158 (379)
.|..++-...|.+.++-+||++|.|
T Consensus 66 LD~~~~t~~~~tl~~lllGv~~G~~ 90 (100)
T TIGR02230 66 LDRHYPSPFSWTLTMLIVGVVIGCL 90 (100)
T ss_pred HHhhcCCCcHHHHHHHHHHHHHHHH
Confidence 3444444456666666777777654
No 103
>PF09578 Spore_YabQ: Spore cortex protein YabQ (Spore_YabQ); InterPro: IPR019074 This protein is predicted to span the membrane several times. It is only found in genomes of species that perform sporulation, such as Bacillus subtilis, Clostridium tetani, and other members of the Firmicutes (low-GC Gram-positive bacteria). Mutation of this sigmaE-dependent gene blocks development of the spore cortex. The length of the C-terminal region, which includes some hydrophobic regions, is variable.
Probab=37.35 E-value=1e+02 Score=24.32 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=38.1
Q ss_pred hhhhHHHHHHHHHhhHHHHHHhhchhhHHHHhhhhccCCCCCCchhhHHHHHHHHHHHHHHHHhhcCCcccCCCChHHHH
Q psy8728 67 GYFGFGWLRDIFHIQNYVADANKDRDYLDKFNHNLRSYKYPPFSTIRFTGMTVVAYLWSTVVSMAIPEEDIGGLPWKYLH 146 (379)
Q Consensus 67 g~~~i~~~~D~~~i~~~v~~~n~~~~~~~~~~~~~~~~~~p~~~~~rf~~~~~vg~~~G~la~~aip~~~~~~~~~~~~~ 146 (379)
| ..+|.++|.+++-...-..|+ ....+..+++-...+.+.-..+=..+-..+.
T Consensus 8 G-~~lg~~yD~~r~~r~~~~~~~---------------------~~~~i~DllfWl~~~~~~F~~l~~~N~G~iR----- 60 (80)
T PF09578_consen 8 G-IILGFLYDLYRVFRRVFRHSR---------------------WLTGIEDLLFWLLAALIVFYFLYWTNYGEIR----- 60 (80)
T ss_pred H-HHHHHHHHHHHHHHHHhccch---------------------HHHHHHHHHHHHHHHHHHHHHHHHccceeee-----
Confidence 5 689999999987655544432 3346677777666666665555444423333
Q ss_pred HHHHHHHhhhh
Q psy8728 147 FLLPIACALGV 157 (379)
Q Consensus 147 ~~~plavalGV 157 (379)
+-+.+|+++|.
T Consensus 61 ~Y~~lg~~~G~ 71 (80)
T PF09578_consen 61 FYIFLGILLGM 71 (80)
T ss_pred HHHHHHHHHHH
Confidence 23455666664
No 104
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=35.76 E-value=15 Score=25.14 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHHHhhhheeeeecCc
Q psy8728 141 PWKYLHFLLPIACALGVWSVGNIGH 165 (379)
Q Consensus 141 ~~~~~~~~~plavalGV~~Vgn~G~ 165 (379)
|+..+.++.|+..|.| |.+=|||+
T Consensus 2 D~RlliVl~Pil~A~~-Wa~fNIg~ 25 (36)
T CHL00196 2 DTRLLVIAAPVLAAAS-WALFNIGR 25 (36)
T ss_pred ChhHHHHHHHHHHHHH-HHHHHhHH
Confidence 5677889999988755 77778886
No 105
>TIGR00802 nico high-affinity nickel-transporter, HoxN/HupN/NixA family. This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterized members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.
Probab=35.47 E-value=89 Score=30.89 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=47.0
Q ss_pred HHHhhhhhhhHHHHHHHHHhhHHHHHHhhchhhHHHHhhhhccCC------CCCCchhh-HHHHHHHHHHHHH-------
Q psy8728 61 WWCTLGGYFGFGWLRDIFHIQNYVADANKDRDYLDKFNHNLRSYK------YPPFSTIR-FTGMTVVAYLWST------- 126 (379)
Q Consensus 61 ~~~t~gg~~~i~~~~D~~~i~~~v~~~n~~~~~~~~~~~~~~~~~------~p~~~~~r-f~~~~~vg~~~G~------- 126 (379)
+++.+ |+.=+..++++++.-+.+++-+.+.+..++ .+..+. .|.|...+ ---+-.+|.+||.
T Consensus 86 FL~~i-g~~Nl~iL~~~~~~~r~~r~g~~~~~~l~~---~l~~rG~~~Rll~~lf~~v~~pw~mypvG~LFGLGFDTATE 161 (280)
T TIGR00802 86 FLLII-ALLNLVILRNLLRLFRKVRRGIYDEADLEA---LLGNRGLLTRLLGPLFRLVTKSWHMYPVGFLFGLGFDTATE 161 (280)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhhccccchhhHHH---hhhccCcHHHHHHHHHHHhcCchHHHHHHHHHHcccchHHH
Confidence 45555 445667788888877777653322221111 111110 12222111 1122367777764
Q ss_pred HHHhhcCCcccC-CCChHHHHHHHHHHHhhhheeeeecC
Q psy8728 127 VVSMAIPEEDIG-GLPWKYLHFLLPIACALGVWSVGNIG 164 (379)
Q Consensus 127 la~~aip~~~~~-~~~~~~~~~~~plavalGV~~Vgn~G 164 (379)
++.++++..... |++ .+.+.+.|+--++|--++-.+-
T Consensus 162 IaLL~isa~~a~~g~~-~~~il~lP~LFtaGM~L~DT~D 199 (280)
T TIGR00802 162 VALLGLSASAAARGLS-IAAVLSLPVLFAAGMALFDTAD 199 (280)
T ss_pred HHHHHHHHHHhccCCC-hHHHHHHHHHHHhhhHHhcCcc
Confidence 455555444322 443 3455556777676655554443
No 106
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=34.93 E-value=68 Score=32.59 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhheeeeecCc---------ccchHHHHHHHHHhhhchhhc
Q psy8728 144 YLHFLLPIACALGVWSVGNIGH---------ETGTIWWCLAAAYACYPVYWY 186 (379)
Q Consensus 144 ~~~~~~plavalGV~~Vgn~G~---------~~~~l~~~l~aa~~~~~~~~~ 186 (379)
++++++-+|+++|.|+.++.|. .-.++|..++..++.+.++++
T Consensus 6 ~~~~~l~~~~~~~~~~~~~~Gyv~i~~~~~~ie~sl~~~~~~~~~~~~~~~~ 57 (398)
T PRK10747 6 LLFVLLIAGIVVGPMIAGHQGYVLIQTDNYNIETSVTGLAIILILAMVVLFA 57 (398)
T ss_pred HHHHHHHHHHHHHHHHcCCCCeEEEEECCEEEEehHHHHHHHHHHHHHHHHH
Confidence 4566677777888999999984 455666666666655444443
No 107
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=34.45 E-value=16 Score=24.99 Aligned_cols=24 Identities=50% Similarity=0.945 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHHHhhhheeeeecCc
Q psy8728 141 PWKYLHFLLPIACALGVWSVGNIGH 165 (379)
Q Consensus 141 ~~~~~~~~~plavalGV~~Vgn~G~ 165 (379)
|+..++++.|+..|.| |.+=|||+
T Consensus 2 D~R~liVl~Pil~A~g-Wa~fNIg~ 25 (36)
T PF06298_consen 2 DWRLLIVLLPILPAAG-WALFNIGR 25 (36)
T ss_pred CchhHHHHHHHHHHHH-HHHHHhHH
Confidence 5678889999987755 77778886
No 108
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=32.38 E-value=4e+02 Score=24.46 Aligned_cols=55 Identities=7% Similarity=-0.025 Sum_probs=30.5
Q ss_pred heeeeecCcccchHHHHHHHHHhhhchhhcccchhHHHHHHHHHHHhhhhchhhhccCC
Q psy8728 157 VWSVGNIGHETGTIWWCLAAAYACYPVYWYVDESTACTVMVLASALAFDTLSKRWQTKP 215 (379)
Q Consensus 157 V~~Vgn~G~~~~~l~~~l~aa~~~~~~~~~~~e~~~~l~~~l~aa~~~~~~~k~wr~~~ 215 (379)
...+.-+++ .+-.++-+.+...++...+.....++.++++++.+|-..|.=+|+.
T Consensus 51 ml~~~KV~K----~G~~~i~~~i~gl~~~~~G~~~~~~~~~ii~gliaeli~~~g~Yks 105 (189)
T TIGR02185 51 FLMVAKVPK----RGVIFIFGILLGLLFFLMGMYWPMIISSIIGGLLADIIASTGGYKN 105 (189)
T ss_pred hhhhhhcCC----ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 455555555 5555555544433333333355567778888888876655434443
No 109
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=32.17 E-value=21 Score=25.07 Aligned_cols=24 Identities=42% Similarity=0.602 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHHHhhhheeeeecCc
Q psy8728 141 PWKYLHFLLPIACALGVWSVGNIGH 165 (379)
Q Consensus 141 ~~~~~~~~~plavalGV~~Vgn~G~ 165 (379)
|+..++++.|+..|. .|.+=|||+
T Consensus 2 D~RlliVl~Pil~A~-~Wa~fNIg~ 25 (40)
T PRK13240 2 DLRLLIVLAPILAAA-GWAVFNIGK 25 (40)
T ss_pred chhHHHHHHHHHHHH-HHHHHHhhH
Confidence 577888999998775 588888887
No 110
>PF12084 DUF3561: Protein of unknown function (DUF3561); InterPro: IPR022721 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=32.03 E-value=40 Score=28.50 Aligned_cols=48 Identities=27% Similarity=0.620 Sum_probs=29.5
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHhhcCCcccCCCC--------hHHHHHHHHHHHhhhh
Q psy8728 104 YKYPPFSTIRFTGMTVVAYLWSTVVSMAIPEEDIGGLP--------WKYLHFLLPIACALGV 157 (379)
Q Consensus 104 ~~~p~~~~~rf~~~~~vg~~~G~la~~aip~~~~~~~~--------~~~~~~~~plavalGV 157 (379)
...|++| +.| .++|..+=.+ +.|||.. .+|.| |.|++-++|++|-+||
T Consensus 18 ~de~t~s---l~G-~v~GF~~~wL-AlaiPfl-~YG~nTLfFfLYTWPFFLALmPvsVl~Gi 73 (107)
T PF12084_consen 18 DDEPTWS---LPG-GVVGFVFWWL-ALAIPFL-VYGSNTLFFFLYTWPFFLALMPVSVLIGI 73 (107)
T ss_pred cCCCccc---ccc-hhHHHHHHHH-HHhhHHh-hhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555 344 3344432222 6789985 57744 5667788999998884
No 111
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=30.20 E-value=3.8e+02 Score=26.82 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=12.3
Q ss_pred CCHHHHHHHHHHHHHHhC
Q psy8728 320 ARQSEINSACRHLSVKYH 337 (379)
Q Consensus 320 as~~eIkkaYRkla~~~H 337 (379)
.-.++++++|++++.++.
T Consensus 134 ~i~~~~~~~y~~l~~~~p 151 (318)
T PF12725_consen 134 EIFEEAREGYENLAERYP 151 (318)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 345667778888877663
No 112
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=30.13 E-value=36 Score=34.65 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhhheeeeecCc---------ccchHHHHHHHHHhhhchhhc
Q psy8728 143 KYLHFLLPIACALGVWSVGNIGH---------ETGTIWWCLAAAYACYPVYWY 186 (379)
Q Consensus 143 ~~~~~~~plavalGV~~Vgn~G~---------~~~~l~~~l~aa~~~~~~~~~ 186 (379)
.++++++-+++++|.|+-+|.|. .-.++|..++..++.+.+.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~Gyv~i~~~~~~ie~s~~~~~~~~~~~~~~~~~ 57 (409)
T TIGR00540 5 LFLFLLLIAGIVAGPMIAGHQGYVLIETANRIIEMSITGLAIFFIIALAIIFA 57 (409)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEEECCEEEEeeHHHHHHHHHHHHHHHHH
Confidence 34566667777889999999983 556666666655555444443
No 113
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=30.01 E-value=4.6e+02 Score=24.41 Aligned_cols=21 Identities=5% Similarity=-0.058 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhHHHHHHhhch
Q psy8728 71 FGWLRDIFHIQNYVADANKDR 91 (379)
Q Consensus 71 i~~~~D~~~i~~~v~~~n~~~ 91 (379)
|=.-+|.++|-++-.+..-++
T Consensus 30 IEaAYD~ILM~rL~~Rq~Gki 50 (194)
T PF11833_consen 30 IEAAYDAILMERLRQRQKGKI 50 (194)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 344678888888877776665
No 114
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=27.83 E-value=2.1e+02 Score=25.41 Aligned_cols=57 Identities=21% Similarity=0.363 Sum_probs=41.9
Q ss_pred CchHHHHHHHHHHhhhcccceeecCCchhHHHHHHh-hhhhhhHHHHHHHHHhhHHHHHHh
Q psy8728 29 EKSLYITYLLWLVGGIFGVHHFYLGRDIQGFLWWCT-LGGYFGFGWLRDIFHIQNYVADAN 88 (379)
Q Consensus 29 ~k~~~~a~~l~~~~G~~G~HrfYlg~~~~g~~~~~t-~gg~~~i~~~~D~~~i~~~v~~~n 88 (379)
.|.-..+.++++++|.+|+==|-=|+- |+-+++. .|| +.+|+++-.+.+....++.+
T Consensus 24 ~~~g~~s~~~YlllG~~GlPVFagg~g--G~~~l~gPTgG-yl~gf~~~a~i~g~~~~~~~ 81 (148)
T PF02632_consen 24 PRRGFLSVLLYLLLGAIGLPVFAGGSG--GLGYLLGPTGG-YLLGFPLAALIIGLLAERLK 81 (148)
T ss_pred hHHHHHHHHHHHHHHHHCCchhcCCCC--chHHHhcCCCh-HHHHHHHHHHHHHHHHHhcc
Confidence 566778899999999999999988865 4444443 236 68888888887766655444
No 115
>PRK10726 hypothetical protein; Provisional
Probab=27.21 E-value=48 Score=27.93 Aligned_cols=28 Identities=29% Similarity=0.624 Sum_probs=21.0
Q ss_pred HhhcCCcccCCCC--------hHHHHHHHHHHHhhhh
Q psy8728 129 SMAIPEEDIGGLP--------WKYLHFLLPIACALGV 157 (379)
Q Consensus 129 ~~aip~~~~~~~~--------~~~~~~~~plavalGV 157 (379)
+.|||... +|-| |.|++-++|++|-.||
T Consensus 35 A~aiPfl~-YG~nTlfF~LYTWPFFLALmPvsVlvGi 70 (105)
T PRK10726 35 ALAIPFLI-YGSNTLFFFLYTWPFFLALMPVSVLVGI 70 (105)
T ss_pred HHHHHHHH-hcccHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 47888874 7744 5667788999998884
No 116
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=25.76 E-value=1.6e+02 Score=21.25 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccCCCChHHHHHHHHHHHhhhhee
Q psy8728 114 FTGMTVVAYLWSTVVSMAIPEEDIGGLPWKYLHFLLPIACALGVWS 159 (379)
Q Consensus 114 f~~~~~vg~~~G~la~~aip~~~~~~~~~~~~~~~~plavalGV~~ 159 (379)
+++.+++|+++|...= ..++....++.+.+-++++.|+|.
T Consensus 10 ~~~~i~~g~~~G~~lD------~~~~t~p~~~~~g~llG~~~g~~~ 49 (55)
T PF09527_consen 10 MAAPILVGFFLGYWLD------KWFGTSPWFTLIGLLLGIAAGFYN 49 (55)
T ss_pred HHHHHHHHHHHHHHHH------HHcCCChHHHHHHHHHHHHHHHHH
Confidence 4455555555555542 224444567777777888877654
No 117
>PF04224 DUF417: Protein of unknown function, DUF417; InterPro: IPR007339 This family of uncharacterised proteins appears to be restricted to proteobacteria.
Probab=25.72 E-value=1.6e+02 Score=27.13 Aligned_cols=94 Identities=14% Similarity=0.125 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhhcccceeecCCchhHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhchhhHHHHhhhhccCCCCCCchh
Q psy8728 33 YITYLLWLVGGIFGVHHFYLGRDIQGFLWWCTLGGYFGFGWLRDIFHIQNYVADANKDRDYLDKFNHNLRSYKYPPFSTI 112 (379)
Q Consensus 33 ~~a~~l~~~~G~~G~HrfYlg~~~~g~~~~~t~gg~~~i~~~~D~~~i~~~v~~~n~~~~~~~~~~~~~~~~~~p~~~~~ 112 (379)
++-+-+.+.+.++|.-+|.-= ...||.=++.= . -.+.|++|.+- +.+..+.+.+ ..+.+++-++|...-+|-
T Consensus 17 i~r~~i~iVl~WiG~lKf~~y-EA~gI~PlVan-S-PlmswlY~~~~-~~~~~~~~~~---~~~n~~wh~~n~~~~~S~- 88 (175)
T PF04224_consen 17 ILRLGIVIVLLWIGGLKFTPY-EADGIVPLVAN-S-PLMSWLYDVFS-YKYHQNKEGE---VPENRAWHKANGTYGFSY- 88 (175)
T ss_pred HHHHHHHHHHHHHHHhhhhHH-HHhhhhHHHhC-C-cHHHHHhhccc-hhhhhccccc---cHHHHHHHHhcCchhhHH-
Confidence 344555566778888888754 46777766664 2 47899999887 5555544444 356677777776655554
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCc
Q psy8728 113 RFTGMTVVAYLWSTVVSMAIPEE 135 (379)
Q Consensus 113 rf~~~~~vg~~~G~la~~aip~~ 135 (379)
++|-+.+-..+.+++.+--|..
T Consensus 89 -~lG~vEi~~~ill~~g~~~p~~ 110 (175)
T PF04224_consen 89 -LLGVVEIIIGILLLLGIWSPKL 110 (175)
T ss_pred -HHHHHHHHHHHHHHHHHhhHHH
Confidence 8887766555555544443433
No 118
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=25.63 E-value=1.5e+02 Score=25.84 Aligned_cols=54 Identities=9% Similarity=0.117 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhcccceeecC-CchhHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhh
Q psy8728 33 YITYLLWLVGGIFGVHHFYLG-RDIQGFLWWCTLGGYFGFGWLRDIFHIQNYVADANK 89 (379)
Q Consensus 33 ~~a~~l~~~~G~~G~HrfYlg-~~~~g~~~~~t~gg~~~i~~~~D~~~i~~~v~~~n~ 89 (379)
+++.+..++.|++++-..+.+ ....-++ +..++| .+..+.|++++-.+.++..+
T Consensus 86 lvsv~~~~~~~~~~~~~~~~~~~~~~Rvl-lgl~~a--l~vlvAEv~l~~~y~~k~e~ 140 (142)
T PF11712_consen 86 LVSVFAVFFAGWYWAGYSFGGWSFPYRVL-LGLFGA--LLVLVAEVVLYIRYLRKVEE 140 (142)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchHHHHH-HHHHHH--HHHHHHHHHHHHHHHhhhhh
Confidence 444555556677555544422 2222222 222223 57778899998887776553
No 119
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=25.38 E-value=1.4e+02 Score=26.87 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhhhe---------eeeecCcccchHHHHHHHHHhh
Q psy8728 145 LHFLLPIACALGVW---------SVGNIGHETGTIWWCLAAAYAC 180 (379)
Q Consensus 145 ~~~~~plavalGV~---------~Vgn~G~~~~~l~~~l~aa~~~ 180 (379)
+++++.++|| ||+ +|-|++-+..+-.++-++|.+.
T Consensus 83 LlivIgivva-Gvygi~kl~g~~lv~~~~~~~~~~ly~glvcvli 126 (169)
T COG5130 83 LLIVIGIVVA-GVYGIRKLRGRPLVCNIELEPRSVLYAGLVCVLI 126 (169)
T ss_pred HHHHHhhhhh-eeeehhhcccCccccccceeecchhhhhHHHHHH
Confidence 5556666554 777 7888998888888888888765
No 120
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=24.24 E-value=46 Score=30.66 Aligned_cols=75 Identities=21% Similarity=0.149 Sum_probs=39.5
Q ss_pred HHHHHHHhhhcccceeecCCchhHHHHH----HhhhhhhhHHHHHHHHHhhHHHHHHhhchhhHHHHhhhhccCCCCCCc
Q psy8728 35 TYLLWLVGGIFGVHHFYLGRDIQGFLWW----CTLGGYFGFGWLRDIFHIQNYVADANKDRDYLDKFNHNLRSYKYPPFS 110 (379)
Q Consensus 35 a~~l~~~~G~~G~HrfYlg~~~~g~~~~----~t~gg~~~i~~~~D~~~i~~~v~~~n~~~~~~~~~~~~~~~~~~p~~~ 110 (379)
.|++..++...|.||++--|-.++-.++ ..+|.+.+-|-+++.....++=.++-+ .+..|.|
T Consensus 11 ~~~~~~lgit~G~HRl~aHrsfk~~~~l~~~l~~~g~~a~qgs~~~W~~~HR~HH~~sD--------------t~~DPhs 76 (178)
T cd03505 11 YYLLTGLGITAGYHRLWAHRSFKAPKPLRIFLAILGSLAGQGSPLWWVADHRLHHRYSD--------------TDGDPHS 76 (178)
T ss_pred HHHHHHHHHHHHHHHHHhhccCcCcHHHHHHHHHHHHHHcCcCHHHHHHHHHHhhcccC--------------CCCCCCC
Confidence 4444445568899999988766543222 112222344555555554443333332 2346777
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q psy8728 111 TIRFTGMTVVAYLWSTVVSM 130 (379)
Q Consensus 111 ~~rf~~~~~vg~~~G~la~~ 130 (379)
+.| |.++.-+-++
T Consensus 77 ~~~-------gf~~~h~gW~ 89 (178)
T cd03505 77 PKR-------GFWFSHVGWL 89 (178)
T ss_pred ccc-------CcHHHHHhhH
Confidence 764 5555555444
No 121
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=22.97 E-value=52 Score=17.59 Aligned_cols=13 Identities=46% Similarity=0.618 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHcC
Q psy8728 353 KFYEIQQACELLS 365 (379)
Q Consensus 353 ~f~~I~eAYevLs 365 (379)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4777888888774
No 122
>COG2879 Uncharacterized small protein [Function unknown]
Probab=22.34 E-value=1.3e+02 Score=23.31 Aligned_cols=29 Identities=31% Similarity=0.281 Sum_probs=19.8
Q ss_pred HHHHHHHHHhCCCCCCChhHhHHHHHHHHHHHHH
Q psy8728 327 SACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQA 360 (379)
Q Consensus 327 kaYRkla~~~HPDk~~~~~~~~~a~e~f~~I~eA 360 (379)
..|-+-.++.|||+.+- .-+|-|++=++|
T Consensus 26 dnYVehmr~~hPd~p~m-----T~~EFfrec~da 54 (65)
T COG2879 26 DNYVEHMRKKHPDKPPM-----TYEEFFRECQDA 54 (65)
T ss_pred HHHHHHHHHhCcCCCcc-----cHHHHHHHHHHh
Confidence 45788889999999662 234666665554
No 123
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=21.79 E-value=5.3e+02 Score=26.22 Aligned_cols=21 Identities=14% Similarity=0.022 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCC
Q psy8728 320 ARQSEINSACRHLSVKYHPDK 340 (379)
Q Consensus 320 as~~eIkkaYRkla~~~HPDk 340 (379)
.+..|+...--|+|+..|---
T Consensus 239 ~di~eVD~KLvklAk~~~g~l 259 (356)
T COG4956 239 EDIPEVDSKLVKLAKVTGGKL 259 (356)
T ss_pred cchhhHHHHHHHHHHHhCCEE
Confidence 355678888888888887543
No 124
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=21.54 E-value=2.6e+02 Score=28.21 Aligned_cols=96 Identities=13% Similarity=0.165 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhhheeeeecCc--cc-----chHHHHHHHHHhhhchhhcccchhHHHHHHHHHHHhhhhchhhhccCCC
Q psy8728 144 YLHFLLPIACALGVWSVGNIGH--ET-----GTIWWCLAAAYACYPVYWYVDESTACTVMVLASALAFDTLSKRWQTKPK 216 (379)
Q Consensus 144 ~~~~~~plavalGV~~Vgn~G~--~~-----~~l~~~l~aa~~~~~~~~~~~e~~~~l~~~l~aa~~~~~~~k~wr~~~~ 216 (379)
+..|.+|++-...|.+.+.+.. .+ |+--......|+..|...+.=-...+|+..+++-.-- .+..+....
T Consensus 141 ~~aW~iP~~~ti~vL~~~~VdgD~ltGiC~Vg~~~~~~l~~fvl~Pl~i~l~iG~~fL~~G~~~l~ri---r~~~~~~~~ 217 (328)
T PF01534_consen 141 LVAWGIPAVLTIAVLALRKVDGDELTGICFVGNQNPSALRGFVLAPLFIYLLIGTVFLLAGFVSLFRI---RRSMKHDGT 217 (328)
T ss_pred hHHhhhhHHHHHHHHHhcccccccccceeEEeCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---hhhhccccc
Confidence 4678899988877777776543 11 1111223444555555544412344444444332222 222222222
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHH
Q psy8728 217 PRKRFLRRCLTIGACALLYSSLWGSY 242 (379)
Q Consensus 217 ~~~~~~~r~~~l~~a~l~~~~l~~~~ 242 (379)
+.+++-+-+.|+|+...+|+.+....
T Consensus 218 ~~~Kl~klm~RiGiFsvly~vp~~~~ 243 (328)
T PF01534_consen 218 KTSKLEKLMIRIGIFSVLYLVPALIV 243 (328)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333456677777776666653
No 125
>TIGR02893 spore_yabQ spore cortex biosynthesis protein YabQ. YabQ, a protein predicted to span the membrane several times, is found in exactly those genomes whose species perform sporulation in the style of Bacillus subtilis, Clostridium tetani, and others of the Firmicutes. Mutation of this sigma(E)-dependent gene blocks development of the spore cortex. The length of the C-terminal region, including some hydrophobic regions, is rather variable between members.
Probab=21.08 E-value=3.8e+02 Score=23.33 Aligned_cols=27 Identities=19% Similarity=0.090 Sum_probs=17.5
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhHHHHHHh
Q psy8728 60 LWWCTLGGYFGFGWLRDIFHIQNYVADAN 88 (379)
Q Consensus 60 ~~~~t~gg~~~i~~~~D~~~i~~~v~~~n 88 (379)
++++.. | ..+|.++|.+++-....+.|
T Consensus 10 l~~~~~-G-~~lG~~yD~yr~~r~~~~~~ 36 (130)
T TIGR02893 10 ISMVLS-G-IILGALFDTYRRFRKRQRLN 36 (130)
T ss_pred HHHHHH-H-HHHHHHHHHHHHHHHHHhhh
Confidence 333334 4 58999999998665554444
No 126
>COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
Probab=20.37 E-value=2.1e+02 Score=29.49 Aligned_cols=21 Identities=14% Similarity=-0.001 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhhcCCcccCC
Q psy8728 119 VVAYLWSTVVSMAIPEEDIGG 139 (379)
Q Consensus 119 ~vg~~~G~la~~aip~~~~~~ 139 (379)
.||-..|++=+++--.++.++
T Consensus 82 SVGSv~gllGaiaail~v~~~ 102 (394)
T COG4214 82 SVGSVLGLLGAIAAILDVKWG 102 (394)
T ss_pred cHHHHHHHHHHHHHHHhhhcc
Confidence 345555555555554554433
No 127
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=20.05 E-value=1.1e+02 Score=28.61 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCChhHhHHHHH
Q psy8728 317 AHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQS 352 (379)
Q Consensus 317 ~~~as~~eIkkaYRkla~~~HPDk~~~~~~~~~a~e 352 (379)
+++||.|||++|+.++..+|--|... -+.-|.|-+
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd~~~-~~~IEaAYD 35 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGDEKS-REAIEAAYD 35 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHH
Confidence 57899999999999999999666533 233344433
No 128
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=20.04 E-value=7.4e+02 Score=23.78 Aligned_cols=13 Identities=15% Similarity=0.255 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHH
Q psy8728 115 TGMTVVAYLWSTV 127 (379)
Q Consensus 115 ~~~~~vg~~~G~l 127 (379)
.+++++|.-+|.+
T Consensus 135 ~g~~~vg~~~~~~ 147 (283)
T TIGR01476 135 LGPPAVGLSYEGL 147 (283)
T ss_pred ccHHHHHHHHHHH
Confidence 6777787755543
Done!