RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8728
(379 letters)
>gnl|CDD|218469 pfam05154, TM2, TM2 domain. This family is composed of a pair of
transmembrane alpha helices connected by a short
linker. The function of this domain is unknown, however
it occurs in a wide range or protein contexts.
Length = 51
Score = 69.5 bits (171), Expect = 2e-15
Identities = 23/50 (46%), Positives = 27/50 (54%)
Query: 29 EKSLYITYLLWLVGGIFGVHHFYLGRDIQGFLWWCTLGGYFGFGWLRDIF 78
+KS I LL L G FGVH FYLG+ G L+ T G G WL D+
Sbjct: 2 KKSKLIALLLSLFLGGFGVHRFYLGKTGTGILYLLTFWGILGIWWLIDLI 51
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in Prosite
are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 59.9 bits (146), Expect = 7e-12
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 309 NAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKH 368
+ +++LG+ A EI A R L++KYHPDK D + KF EI +A E+LS+
Sbjct: 1 DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEE---KFKEINEAYEVLSDP- 56
Query: 369 AKRRQ 373
KR
Sbjct: 57 EKRAI 61
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 65.0 bits (159), Expect = 1e-11
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 312 KVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKR 371
++LG++ A + EI A R L+ KYHPD+ D+E + KF EI +A E+LS+ KR
Sbjct: 8 EILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKE---AEEKFKEINEAYEVLSDP-EKR 63
Query: 372 RQ 373
Sbjct: 64 AA 65
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 56.8 bits (138), Expect = 6e-11
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 309 NAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSN 366
+ + +LG+ A EI A R L++KYHPDK D E + KF EI +A E+LS+
Sbjct: 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEE---KFKEINEAYEVLSD 55
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 54.5 bits (132), Expect = 5e-10
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNK 367
+ +++LG+ A EI A R L++KYHPDK D+E+ + KF EI +A E+LS+
Sbjct: 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEE--AEEKFKEINEAYEVLSDP 58
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 59.4 bits (144), Expect = 1e-09
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
++VLG++ +A + EI A R L++KYHPDK ++E + F E+ +A E+LSN +
Sbjct: 6 YEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEA---EEHFKEVNEAYEVLSNDDKR 62
Query: 371 RR 372
RR
Sbjct: 63 RR 64
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included by
this family. Eukaryotic (mitochondrial and chloroplast)
forms are not included in the scope of this family.
Length = 354
Score = 57.6 bits (140), Expect = 3e-09
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+++LG++ A + EI A R L+ KYHPD+ K E + KF EI +A E+LS+ K
Sbjct: 3 YEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKE----AEEKFKEINEAYEVLSDP-EK 57
Query: 371 RRQKNQ 376
R Q +Q
Sbjct: 58 RAQYDQ 63
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 57.2 bits (138), Expect = 5e-09
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+ +LG++ TA EI A R L+VKYHPDK D E + +F E+ +A E+LS+ A+
Sbjct: 4 YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEA---EKRFKEVSEAYEVLSD--AQ 58
Query: 371 RRQKNQR 377
+R+ R
Sbjct: 59 KRESYDR 65
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 56.2 bits (135), Expect = 1e-08
Identities = 27/67 (40%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Query: 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSN 366
E++ + +LG++ +A EI SA R L++KYHPDK K ++E ++ KF E +A E+L
Sbjct: 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKE---SEEKFKEATEAYEIL-- 57
Query: 367 KHAKRRQ 373
+ K+RQ
Sbjct: 58 RDPKKRQ 64
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 55.1 bits (133), Expect = 2e-08
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPD--KAKSDEEKQHNQSKFYEIQQACELL 364
+ LG++ A Q EI A R LS KYHPD K EE K+ E+Q+A E L
Sbjct: 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEE------KYKEVQEAYETL 56
Query: 365 SNKHAKRRQKNQ 376
S+ KR +Q
Sbjct: 57 SDPQ-KRAAYDQ 67
>gnl|CDD|222840 PHA01886, PHA01886, TM2 domain-containing protein.
Length = 78
Score = 50.4 bits (120), Expect = 2e-08
Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 30 KSLYITYLLWLVGGIFGVHHFYLGRDIQGFLWWCTLGGYFGFGWLRDIFHIQNYVADAN 88
KS I Y+LW G FG+H FY G G +W T GG FG GW D+F V +N
Sbjct: 2 KSTAIAYVLWFFLGFFGIHRFYTGNIATGIIWLFT-GGLFGIGWFIDLFLTAGLVQSSN 59
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 54.4 bits (131), Expect = 3e-08
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
++VLGL A EI A R L++KYHPDK K ++E + KF EI +A ++LS+ K
Sbjct: 7 YEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEE---KFKEINEAYQVLSDPQ-K 62
Query: 371 RRQKNQ 376
+ Q +Q
Sbjct: 63 KAQYDQ 68
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 54.1 bits (130), Expect = 5e-08
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 305 FGEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELL 364
+ E++ +KVLG+ A ++EI A R L+ +YHPD K D + + +F EI +A ++L
Sbjct: 6 YIEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKA---EERFKEISEAYDVL 62
Query: 365 SNKHAKRRQKNQRS 378
S++ ++ RS
Sbjct: 63 SDEKKRKEYDEARS 76
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 53.7 bits (129), Expect = 6e-08
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 306 GEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLS 365
+++ +++LG+ A + EI A R L+ KYHPD D+E + KF EI +A E+LS
Sbjct: 3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEA---EQKFKEINEAYEILS 59
Query: 366 NKHAKRRQKNQ 376
+ KR Q +Q
Sbjct: 60 DPQ-KRAQYDQ 69
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 52.6 bits (126), Expect = 1e-07
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+K+LG+ A Q +I A R L+ K+HPD K + KF EI +A E+LS+ K
Sbjct: 6 YKILGVDRNASQEDIKKAFRELAKKWHPD--LHPGNKAEAEEKFKEISEAYEVLSDPQ-K 62
Query: 371 RRQKNQ 376
RRQ +Q
Sbjct: 63 RRQYDQ 68
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 52.8 bits (127), Expect = 1e-07
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
++VLG++ +A + EI A R LS KYHPD K + + KF EI +A E+LS+ K
Sbjct: 7 YEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADE----KFKEISEAYEVLSDDQ-K 61
Query: 371 RRQKNQ 376
R Q +Q
Sbjct: 62 RAQYDQ 67
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 52.3 bits (125), Expect = 2e-07
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLS- 365
+++ +++LGL+ A + EI A R +++KYHPDK K ++E +S F E +A E+L
Sbjct: 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEA---ESIFKEATEAYEVLID 58
Query: 366 -NKHAK 370
NK A+
Sbjct: 59 DNKRAQ 64
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 52.1 bits (125), Expect = 2e-07
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+++LG++ A Q EI A R L+ KYHPD K+ E + KF EI +A ++LS+ K
Sbjct: 6 YEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEA----EEKFKEINEAYQVLSDPE-K 60
Query: 371 RRQKNQ 376
R+ +Q
Sbjct: 61 RKLYDQ 66
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 50.8 bits (122), Expect = 6e-07
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 313 VLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRR 372
+LG++ A +EI A R L+ + HPD DEE Q KF EI A E+LS+ KRR
Sbjct: 8 LLGVSRNASDAEIKRAYRKLARELHPD-VNPDEEAQE---KFKEISVAYEVLSDPE-KRR 62
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 50.6 bits (121), Expect = 7e-07
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
++VL L+ SEI A R L++K+HPDK E KF EI +A E+LS+ K
Sbjct: 31 YEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPE-------KFKEISRAYEVLSDPE-K 82
Query: 371 RR 372
R+
Sbjct: 83 RK 84
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
Length = 372
Score = 50.3 bits (120), Expect = 8e-07
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSN 366
+++ ++VLG++ TA + EI A R L+ +YHPD KS + K EI +A ++L +
Sbjct: 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHD----KMVEINEAADVLLD 58
Query: 367 KHAKRRQKNQ 376
K KR+Q +Q
Sbjct: 59 KD-KRKQYDQ 67
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 49.8 bits (120), Expect = 1e-06
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 313 VLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKR 371
VLG++ A + EI A R L++KYHPD+ D+E + KF EI++A E+LS+ KR
Sbjct: 9 VLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEA---EEKFKEIKEAYEVLSDPQ-KR 63
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 49.1 bits (116), Expect = 1e-06
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+++LG+ A EI A R L++KYHPD+ D + KF EI +A E+LS+ +
Sbjct: 9 YEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEE--KFKEINEAYEILSD-PER 65
Query: 371 RRQKNQR 377
R + ++
Sbjct: 66 RAEYDKI 72
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular
trafficking and secretion].
Length = 610
Score = 50.0 bits (119), Expect = 1e-06
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAK--SDEEKQHNQSKFYEIQQACELLSNKH 368
+++LG+ + +I R LS+K+HPDKA +E + + K+ I +A LL++K
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDK- 159
Query: 369 AKRRQ 373
KRR+
Sbjct: 160 -KRRE 163
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 49.4 bits (117), Expect = 2e-06
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
++VLG+ A + EI A R L+ KYHPD+ K+ + F EI +A ++LSN +
Sbjct: 5 YEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAAS----IFAEINEANDVLSNPKKR 60
Query: 371 RR 372
Sbjct: 61 AN 62
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 48.3 bits (115), Expect = 3e-06
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+++LGL+ A +I A R L++KYHPDK K + ++ KF EI +A +LS+ K
Sbjct: 8 YEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEE----KFKEISEAYAVLSDAE-K 62
Query: 371 RRQ 373
R Q
Sbjct: 63 RAQ 65
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 47.9 bits (114), Expect = 4e-06
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSN 366
+++LG++ A Q EI A + L ++HPD + E ++ + KF EIQ+A E+LS+
Sbjct: 7 YEILGVSRNATQEEIKRAYKRLVKEWHPD--RHPENRKEAEQKFKEIQEAYEVLSD 60
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 47.1 bits (112), Expect = 7e-06
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
++VLG++ TA EI A R +++YHPDK D+E + KF E +A ++LS+ +
Sbjct: 8 YEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEE---KFKEAAEAYDVLSDPDKR 64
Query: 371 RR 372
R
Sbjct: 65 SR 66
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 46.9 bits (111), Expect = 7e-06
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+ +LG+ A Q EI A + L+ KYHPD KS ++ KF EI +A +LS+ +
Sbjct: 7 YAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEE----KFKEINEAYTVLSDPEKR 62
Query: 371 R 371
R
Sbjct: 63 R 63
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 47.1 bits (112), Expect = 7e-06
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
++VLG+ A + EI A R L+ KYHPD S+EE + KF EI +A +LS+ +
Sbjct: 8 YEVLGVDRNADKKEIKKAYRKLARKYHPD--VSEEEGA--EEKFKEISEAYAVLSDDEKR 63
Query: 371 RR 372
+R
Sbjct: 64 QR 65
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 45.7 bits (108), Expect = 2e-05
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+++LG++ TA EI SA R L++KYHPD+ K + KF +I +A +LS+ A+
Sbjct: 5 YELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAE----KFAQINEAYAVLSD--AE 58
Query: 371 RRQKNQR 377
+R R
Sbjct: 59 KRAHYDR 65
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 45.5 bits (108), Expect = 2e-05
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+++LG+ A + EI + R L++KYHPD+ D+E + F E +A E+LS+ K
Sbjct: 7 YEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEA---EELFKEAAEAYEVLSD--PK 61
Query: 371 RRQ 373
+R
Sbjct: 62 KRG 64
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 45.1 bits (107), Expect = 3e-05
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
++VLG++ A + EI A R L+++YHPD+ + E + KF E +A E+L + +
Sbjct: 7 YEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEA---EQKFKEAAEAYEVLRDAEKR 63
Query: 371 RR 372
R
Sbjct: 64 AR 65
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 44.6 bits (105), Expect = 5e-05
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKS-DEEKQHNQSKFYEIQQACELLSN 366
Q+ +++LG++ TA Q+++ A L+ +YHPD + D EK KF EI A ++L +
Sbjct: 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEK-----KFKEINAAYDVLKD 57
Query: 367 KHAK 370
+ +
Sbjct: 58 EQKR 61
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 43.8 bits (103), Expect = 8e-05
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSN 366
+++ ++VLG+ A E+ A R L+ KYHPD K+ + + KF E+++A + LS+
Sbjct: 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDA----EDKFKEVKEAYDTLSD 58
Query: 367 KHAKRR 372
K
Sbjct: 59 PQKKAH 64
>gnl|CDD|225196 COG2314, XynA, Predicted membrane protein [Function unknown].
Length = 95
Score = 38.9 bits (91), Expect = 4e-04
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 33 YITYLLWLVGGIFGVHHFYLGRDIQGFLWWCTLGGYFGFGWLRDIFHIQNYVADANKDRD 92
I LL + GIFG+H FYLG+ +G L G + I Y+ D
Sbjct: 11 LIAGLLAALFGIFGLHKFYLGQGGKGIL----TLLLNWTGIFLILLLI-GYLGVLLGDEF 65
Query: 93 YLDKF 97
Y+D
Sbjct: 66 YIDGI 70
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 41.5 bits (98), Expect = 5e-04
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPD--KAKSDEEKQHNQSKFYEIQQACELLSNKH 368
+++LG++ A + E+ A R L+ KYHPD K E+ +F EI +A E+LS+
Sbjct: 6 YEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAED------RFKEINRAYEVLSDPE 59
Query: 369 AKRR 372
+ R
Sbjct: 60 TRAR 63
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 41.3 bits (97), Expect = 5e-04
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSN 366
E++ +K LG++ A EI A R L+ + HPD D + +F + +A ++LS+
Sbjct: 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAA---EERFKAVSEAHDVLSD 64
Query: 367 KHAKRRQ 373
AKR++
Sbjct: 65 P-AKRKE 70
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
Length = 267
Score = 39.8 bits (94), Expect = 0.001
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 18/86 (20%)
Query: 287 QQHGWYETWSQIVELGDPFGEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDK--AKS- 343
Q G Y+ + L D A+KVLG++ + EI A R L ++HPDK AK
Sbjct: 185 QGGGGYQQAQRGPTLED------AYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGL 238
Query: 344 DEE-----KQHNQSKFYEIQQACELL 364
E K+ Q EIQ A EL+
Sbjct: 239 PPEMMEMAKEKAQ----EIQAAYELI 260
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional.
Length = 306
Score = 39.8 bits (93), Expect = 0.002
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAK-SDEEKQHNQSKFYEIQQACELLSNKHA 369
+ ++G+ T I +A R L+ KYHPD +K D E ++F E+ +A E+LS++
Sbjct: 7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAE-----ARFKEVAEAWEVLSDEQ- 60
Query: 370 KRRQKNQ 376
+R + +Q
Sbjct: 61 RRAEYDQ 67
>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional.
Length = 166
Score = 37.5 bits (87), Expect = 0.004
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 308 QNAFKVLGLAHTAR--QSEINSACRHLSVKYHPDKAKSDEEKQHN 350
QN F++LGL + + VKYHPDKAK+ +EK+ N
Sbjct: 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQN 46
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 35.8 bits (82), Expect = 0.027
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSN 366
E + +++L + + Q I + R L++KYHPD+ D+E + KF I +A +LS+
Sbjct: 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEE---KFKLINEAYGVLSD 58
Query: 367 KHAK 370
+ +
Sbjct: 59 EKKR 62
>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB. This
model describes the small subunit, Hsc20 (20K heat shock
cognate protein) of a pair of proteins Hsc66-Hsc20,
related to the DnaK-DnaJ heat shock proteins, which also
serve as molecular chaperones. Hsc20, unlike DnaJ,
appears not to have chaperone activity on its own, but
to act solely as a regulatory subunit for Hsc66 (i.e.,
to be a co-chaperone). The gene for Hsc20 in E. coli,
hscB, is not induced by heat shock [Protein fate,
Protein folding and stabilization].
Length = 155
Score = 34.9 bits (80), Expect = 0.029
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 322 QSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRR 372
QS + R L +YHPD + +E+ + + QA L K RR
Sbjct: 5 QSRLRKRYRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTL--KDPLRR 53
>gnl|CDD|240601 cd12918, VKOR_arc, Vitamin K epoxide reductase family in archaea
and some bacteria. This family includes vitamin K
epoxide reductase (VKOR) mostly present in archaea and
some bacteria. VKOR (also named VKORC1) is an integral
membrane protein that catalyzes the reduction of vitamin
K 2,3-epoxide and vitamin K to vitamin K hydroquinone,
an essential co-factor subsequently used in the
gamma-carboxylation of glutamic acid residues in blood
coagulation enzymes. All homologs of VKOR contain an
active site CXXC motif, which is switched between
reduced and disulfide-bonded states during the reaction
cycle. In some bacterial homologs, the VKOR domain is
fused with domains of the thioredoxin family of
oxidoreductases which may function as redox partners in
initiating the reduction cascade.
Length = 126
Score = 32.3 bits (74), Expect = 0.16
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 125 STVVSMAIPEEDIGGLPWKYL---HFLLPIACALGVWSVGNIGHETGTIWWCLAAAYACY 181
V+S P I G+P L F + + +L + W L A+ Y
Sbjct: 39 EKVLS--SPYSRILGVPLAVLGLAWFAVLLVLSLLAALRVRLLLGALLYWSILGIAFVPY 96
Query: 182 PVY--WYVDESTA--CTVM 196
VY ++ + CTV
Sbjct: 97 LVYLELFLIGAICLYCTVA 115
>gnl|CDD|227826 COG5539, COG5539, Predicted cysteine protease (OTU family)
[Posttranslational modification, protein turnover,
chaperones].
Length = 306
Score = 33.3 bits (76), Expect = 0.17
Identities = 27/124 (21%), Positives = 42/124 (33%), Gaps = 21/124 (16%)
Query: 19 NNSDKTKVHAEKSLYITYLLWLVGGIFGVHHFYLGRDIQGFLWWCTLGGYFGFGWLRDIF 78
+N D + I Y W+V D QG G + D
Sbjct: 150 SNPDLYNPAILEIDVIAYATWIVK-----------PDSQG-------DGCIEIAIISDQL 191
Query: 79 HIQNYVADANKDRDYLDKFN-HNLRSYKYPPFSTIRFTGMTVVAYLWSTVVSMAIPEEDI 137
++ +V D +KD D++N H F+ I F T+ LW T V+ + +
Sbjct: 192 PVRIHVVDVDKDS--EDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVNEVLFDASD 249
Query: 138 GGLP 141
G
Sbjct: 250 GITI 253
>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational
modification, protein turnover, chaperones].
Length = 174
Score = 31.9 bits (73), Expect = 0.28
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 310 AFKVLGLAHTARQSEINSACRHLSVKYHPDKA--KSDEEKQHN--QSKFYEIQQACELL 364
A KVLG+ A Q I A R L + HPDKA K + + + K EIQ+A E +
Sbjct: 115 ALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173
Score = 28.8 bits (65), Expect = 3.0
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 11/59 (18%)
Query: 305 FGEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACEL 363
FG AF++ A + R L YHPD+ E + + +QQ+ E+
Sbjct: 7 FGLPRAFQIDLDALKLQY-------RELQRAYHPDRFGKASEAE----QRKALQQSAEV 54
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 32.7 bits (74), Expect = 0.28
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 305 FGEQNAFKVLGLA---HTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYE-IQQA 360
+ + + + +LGL+ A +I A + KYHPDK + K +F++ IQ+A
Sbjct: 40 WKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNK--GCDEFFKLIQKA 97
Query: 361 CELLSNKHAKRRQ 373
E+L ++ R Q
Sbjct: 98 REVLGDRK-LRLQ 109
>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional.
Length = 116
Score = 28.7 bits (64), Expect = 2.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 310 AFKVLGLAHTARQSEINSACRHLSVKYHPDKAKS 343
A+K+L ++ TA + I A + L ++ HPD S
Sbjct: 67 AYKILNISPTASKERIREAHKQLMLRNHPDNGGS 100
>gnl|CDD|236157 PRK08126, PRK08126, hypothetical protein; Provisional.
Length = 432
Score = 29.3 bits (66), Expect = 3.2
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 206 TLSKRWQTKPKPRKRFLRRC---LTIGACALLYSSLWGSYLY 244
LS WQ R R R T +L+ L+G Y Y
Sbjct: 224 ALSPHWQGAEPGRLRSFRDVPVWATAAVLSLILLGLFGWYKY 265
>gnl|CDD|132348 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, F1 subunit beta.
A small number of taxonomically diverse prokaryotic
species have what appears to be a second ATP synthase,
in addition to the normal F1F0 ATPase in bacteria and
A1A0 ATPase in archaea. These enzymes use ion gradients
to synthesize ATP, and in principle may run in either
direction. This model represents the F1 beta subunit of
this apparent second ATP synthase.
Length = 449
Score = 29.4 bits (66), Expect = 3.7
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 43 GIFGVHHFYLGRDIQGFLWWCTLGGYFGFGWLRDIFHIQNYVADANKDRDYLDKFNHNLR 102
GI G H+ L R+++ TL Y L+DI + + +DR +++ R
Sbjct: 344 GIVGERHYDLAREVRQ-----TLAQY---EELKDIIAMLGLEQLSREDRRVVNRARRLER 395
Query: 103 SYKYPPFSTIRFTGM 117
P F+T +FTGM
Sbjct: 396 FLTQPFFTTEQFTGM 410
>gnl|CDD|179382 PRK02195, PRK02195, V-type ATP synthase subunit D; Provisional.
Length = 201
Score = 28.7 bits (65), Expect = 3.7
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 16/56 (28%)
Query: 235 YSSLWGSYLYFNA---KITDGE-------GEEIPLNEAI------HHFFKSPWWVD 274
+ SL+ LYF+ K+ E G E+P+ ++I + +P WVD
Sbjct: 64 WISLFSEPLYFDEDLIKVKKVEKDYENIAGVEVPILDSIEFEIIEYSLLNTPIWVD 119
>gnl|CDD|218616 pfam05506, DUF756, Domain of unknown function (DUF756). This
domain is found, normally as a tandem repeat, at the
C-terminus of bacterial phospholipase C proteins.
Length = 89
Score = 26.8 bits (60), Expect = 5.4
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 270 PWWVDLK--QSLVDTWEFAQQHGWYETW 295
P ++ + L D W A GWY+
Sbjct: 48 PRRYTVEAGKRLEDHWPLAASGGWYDLT 75
>gnl|CDD|226582 COG4097, COG4097, Predicted ferric reductase [Inorganic ion
transport and metabolism].
Length = 438
Score = 28.6 bits (64), Expect = 5.5
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 10/49 (20%)
Query: 109 FSTIRFTGMTVVAYLWSTVVSMAIPEEDIGGLPWKYLHFLLPIACALGV 157
+S F G+ +V LW I E W+ H L+ + LG+
Sbjct: 132 WSAYIFIGLLLVWRLWL-----NIGYE-----NWRIAHRLMAVVYILGL 170
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 29.0 bits (65), Expect = 5.8
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 348 QHNQSKFYEIQQACELLSNKHAKRRQKNQR 377
Q + QQ E LS + AKR ++ +
Sbjct: 319 QFREQLVQLSQQQREALSQEEAKRAKRRHK 348
>gnl|CDD|225795 COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion
transport and metabolism].
Length = 717
Score = 28.6 bits (64), Expect = 6.7
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 28 AEKSLYITYLLWLVGGIFGV-HHFYLG 53
AEK+LY+ L L GI G HH+Y
Sbjct: 484 AEKALYVIAALALFSGIIGTLHHYYFI 510
>gnl|CDD|131722 TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10
family. CRISPR is a widespread repeat family in
prokaryotes. At least 45 different protein families
occur in prokaryotes only when these repeats are
present. This family, a minor CRISPR-associated protein
family, seems largely restricted to the Cyanobacteria.
It belongs to the RAMP superfamily ( pfam03787) [Mobile
and extrachromosomal element functions, Other].
Length = 393
Score = 28.3 bits (63), Expect = 8.2
Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 6/42 (14%)
Query: 255 EEIPL-NEAIHHFFKSPWWVDLKQSLVDTWEFAQQHGWYETW 295
E IP N+ + W D DT G Y TW
Sbjct: 246 ERIPKFNQPLDA-----RWQDWVTLFGDTLVPDPNTGQYFTW 282
>gnl|CDD|129544 TIGR00452, TIGR00452, tRNA (mo5U34)-methyltransferase. This model
describes a set of proteins with homology in its central
region to a large number of methyltransferases active on
a variety of substrates. The similarity includes a motif
resembling ILDVGCG[SG]G. Known examples to date are
restricted to the proteobacteria [Unknown function,
Enzymes of unknown specificity].
Length = 314
Score = 28.0 bits (62), Expect = 8.4
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 272 WVDLKQSLVDTWEFAQQHGWYETWSQIVEL 301
W++ + + W+ QQHG ++ WS VE
Sbjct: 19 WLETLPAQIANWQ-RQQHGLFKQWSNAVEF 47
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.455
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,396,498
Number of extensions: 1859955
Number of successful extensions: 1783
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1761
Number of HSP's successfully gapped: 75
Length of query: 379
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 280
Effective length of database: 6,546,556
Effective search space: 1833035680
Effective search space used: 1833035680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)