RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8728
(379 letters)
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural
genomics, PSI-2, protein structure initiative; 1.25A
{Saccharomyces cerevisiae}
Length = 92
Score = 60.4 bits (147), Expect = 6e-12
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+ +LG++ +A + E+ R ++KYHPDK D E KF EI +A E+L++ K
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTE------KFKEISEAFEILNDPQ-K 63
Query: 371 RRQKNQ 376
R +Q
Sbjct: 64 REIYDQ 69
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 59.7 bits (145), Expect = 1e-11
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 306 GEQNAFKVLGLAHTAR-QSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELL 364
G +N + VL + + ++ A R L+ K+HPD+ K+ EEK + +F I A E L
Sbjct: 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETL 72
Query: 365 SNKHAKRRQKNQ 376
+ + +
Sbjct: 73 KDDE-AKTNYDY 83
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 58.6 bits (142), Expect = 3e-11
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+ +LG+ TA Q++I +A YHPD+ E +F I QA +L +
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEA---AERFTRISQAYVVLGSAT-L 75
Query: 371 RRQKNQ 376
RR+ ++
Sbjct: 76 RRKYDR 81
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 56.9 bits (138), Expect = 5e-11
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+ VLG+ A +E+ A R +++K+HPDK E +F +I QA E+LS++ K
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAE------QFKQISQAYEVLSDEK-K 63
Query: 371 RRQKNQ 376
R+ +Q
Sbjct: 64 RQIYDQ 69
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 78
Score = 57.3 bits (139), Expect = 6e-11
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+++LG++ A ++ A R L++K+HPDK + + F I A +LSN K
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATE----AFKAIGTAYAVLSNPE-K 64
Query: 371 RRQKNQ 376
R+Q +Q
Sbjct: 65 RKQYDQ 70
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 59.1 bits (143), Expect = 7e-11
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 312 KVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQS---KFYEIQQACELLSNKH 368
+LG +A S++ + L + YHPDK +D + KF EI QA ++L N+
Sbjct: 14 SILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEE 73
Query: 369 AKRRQ 373
+R+
Sbjct: 74 -TKRE 77
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 56.9 bits (138), Expect = 8e-11
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+++LG+ A Q EI A L+ KYHPD K D + + KF ++ +A E+LS++ K
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKA---KEKFSQLAEAYEVLSDEV-K 65
Query: 371 RRQKNQ 376
R+Q +
Sbjct: 66 RKQYDA 71
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 57.1 bits (138), Expect = 9e-11
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQS---KFYEIQQACELLSNK 367
+ +LG +A S++ + L + YHPDK +D + KF EI QA ++L N+
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78
Query: 368 HAKRRQKNQ 376
+++ +
Sbjct: 79 E-TKKKYDL 86
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular
chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 57.0 bits (138), Expect = 9e-11
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
++VLG++ TA Q++I A + L+ ++HPDK K + +F +I +A E+LSN+ K
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAED----RFIQISKAYEILSNEE-K 74
Query: 371 RRQKNQ 376
R +
Sbjct: 75 RTNYDH 80
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 56.2 bits (136), Expect = 2e-10
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+ +LG+ +A + +I A L++KYHPDK KS + + KF EI +A E LS+ + +
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEA----KFREIAEAYETLSDAN-R 64
Query: 371 RRQKNQ 376
R++ +
Sbjct: 65 RKEYDT 70
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 55.7 bits (135), Expect = 2e-10
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
++VL + A I A R L++K+HPDK + K+ + +F ++ +A E+LS+ K
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN--KEEAERRFKQVAEAYEVLSDAK-K 68
Query: 371 RRQKNQ 376
R ++
Sbjct: 69 RDIYDR 74
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix
motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 55.8 bits (135), Expect = 3e-10
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
++VLG+ +A +I A R L++++HPDK + K+ + KF + +A E+LS+ K
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDN--KEEAEKKFKLVSEAYEVLSDSK-K 68
Query: 371 RRQKNQ 376
R ++
Sbjct: 69 RSLYDR 74
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 56.1 bits (136), Expect = 3e-10
Identities = 25/64 (39%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
Query: 313 VLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKRR 372
+LG++ TA + EI A + L++KYHPD+ + D+E ++KF EI++A E+L++ KR
Sbjct: 8 ILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEA---EAKFKEIKEAYEVLTDSQ-KRA 63
Query: 373 QKNQ 376
+Q
Sbjct: 64 AYDQ 67
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 54.9 bits (133), Expect = 4e-10
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
++ LGLA A EI A R +++YHPDK K ++ KF EI +A ++LS+ K
Sbjct: 6 YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEE----KFKEIAEAYDVLSDPR-K 60
Query: 371 RRQKNQ 376
R ++
Sbjct: 61 REIFDR 66
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 55.1 bits (133), Expect = 4e-10
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSD--EEKQHNQSKFYEIQQACELLSNKH 368
+ +LG+ A + E+N A R L+V HPDK + E+ F + A L
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSED------AFKAVVNARTALLKN- 82
Query: 369 AKRR 372
K
Sbjct: 83 IKSG 86
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 55.9 bits (135), Expect = 4e-10
Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+ +LG + +I + + +++ HPDK + + F ++Q+A E+L+N+
Sbjct: 23 YTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKA---VETFQKLQKAKEILTNEE-S 78
Query: 371 RRQKNQ 376
R + +
Sbjct: 79 RARYDH 84
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 55.5 bits (134), Expect = 5e-10
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+ VLGL A +I + R L++KYHPDK + E KF EI A +L++ K
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEA---ADKFKEINNAHAILTDAT-K 75
Query: 371 RRQKNQ 376
R ++
Sbjct: 76 RNIYDK 81
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 54.7 bits (132), Expect = 7e-10
Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 311 FKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAK 370
+++L + +A +I A R ++++HPDK + K+ + KF E+ +A E+LS+KH K
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDN--KEFAEKKFKEVAEAYEVLSDKH-K 61
Query: 371 RRQKNQ 376
R ++
Sbjct: 62 REIYDR 67
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 56.8 bits (137), Expect = 1e-09
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 312 KVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKR 371
+LG++ TA EI A + L++K HPDK ++ F +I +A E+L ++ R
Sbjct: 6 SLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNA---HGDFLKINRAYEVLKDED-LR 61
Query: 372 RQKNQ 376
++ ++
Sbjct: 62 KKYDK 66
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 58.5 bits (142), Expect = 1e-09
Identities = 23/62 (37%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 312 KVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKR 371
K+LG+ A++ EI A R L++++HPD +++EEK+ + KF +I A E+LS+ R
Sbjct: 386 KILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP-EMR 444
Query: 372 RQ 373
++
Sbjct: 445 KK 446
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 56.9 bits (138), Expect = 3e-09
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 312 KVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKR 371
+LG+ T I +A R L+ KYHPD +K ++ + KF ++ +A E+L ++ +R
Sbjct: 32 AILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEA----KFKDLAEAWEVLKDE-QRR 86
Query: 372 RQ 373
+
Sbjct: 87 AE 88
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 50.9 bits (122), Expect = 1e-08
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 312 KVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNK 367
V+ A +SE R L +K+HPDK + + F +Q L +
Sbjct: 20 SVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDI--ANEVFKHLQNEINRLEKQ 73
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein;
3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 50.6 bits (121), Expect = 3e-08
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 10/67 (14%)
Query: 312 KVLGLAHTARQS--EINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHA 369
+LGL +A + + A ++HPDK DEE K ++ + + +
Sbjct: 12 DLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGG-DEE------KMKKMNTLYKKMEDG-V 63
Query: 370 KRRQKNQ 376
K +
Sbjct: 64 KYAHQPD 70
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 53.6 bits (128), Expect = 5e-08
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSN 366
+QN + +LG++ TA EI A + L++K HPDK ++ F +I +A E+L +
Sbjct: 20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNA---HGDFLKINRAYEVLKD 76
Query: 367 KHAKRR 372
+ +++
Sbjct: 77 EDLRKK 82
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 48.3 bits (114), Expect = 6e-07
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 312 KVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKHAKR 371
K +G+A ++ R + HPDKA +Q+ + F E+ A N+ K
Sbjct: 121 KPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKP 180
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 47.6 bits (113), Expect = 9e-07
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 307 EQNAFKVLGLAHTAR--QSEINSACRHLSVKYHPDK--AKSDEEKQHNQSKFYEIQQACE 362
N F++ GL S ++S R L ++HPD S+ ++ + +I A +
Sbjct: 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQ 62
Query: 363 LLSNKHAKRR 372
L + +
Sbjct: 63 TLKDPLRRAE 72
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 46.1 bits (109), Expect = 4e-06
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 311 FKVLGLAHTARQS--EINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNKH 368
+LGL +A + + A ++HPDK +E K ++ + + +
Sbjct: 14 MDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE-------KMKKMNTLYKKMEDG- 65
Query: 369 AKRRQKNQ 376
K +
Sbjct: 66 VKYAHQPD 73
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 45.7 bits (108), Expect = 4e-06
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 309 NAFKVLGLAHTAR--QSEINSACRHLSVKYHPDK--AKSDEEKQHNQSKFYEIQQACELL 364
+ F + GL + ++ + L +YHPDK + S E+ + I QA + L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 365 SNKHAKRR 372
+ +
Sbjct: 62 RHPLMRAE 69
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A
{Saccharomyces cerevisiae}
Length = 71
Score = 42.7 bits (101), Expect = 6e-06
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 9/67 (13%)
Query: 307 EQNAFKVLGLAHTAR-QSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLS 365
+ A ++L L + ++ R + + HPDK S +I +A + L
Sbjct: 13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPF-------LATKINEAKDFLE 65
Query: 366 NKHAKRR 372
K +
Sbjct: 66 -KRGISK 71
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 42.2 bits (99), Expect = 1e-05
Identities = 11/73 (15%), Positives = 20/73 (27%), Gaps = 9/73 (12%)
Query: 308 QNAFKVLGLAHTARQS--EINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLS 365
+ ++L L + A + S+ HPDK S E+
Sbjct: 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHA-------LMQELNSLWGTFK 63
Query: 366 NKHAKRRQKNQRS 378
+ R +
Sbjct: 64 TEVYNLRMNLGGT 76
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 40.4 bits (94), Expect = 7e-05
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 312 KVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNK 367
K +G+A ++ R + HP KA +Q+ + F E+ A N+
Sbjct: 37 KPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFENQ 92
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 1e-04
Identities = 32/139 (23%), Positives = 45/139 (32%), Gaps = 49/139 (35%)
Query: 208 SKRWQTKPKPRKRFLR-------RCLTIGACALLYSSLWGSYLYFNAKITDGEGEEIPLN 260
S+R K K RFL L A L+ L + + FNAK +
Sbjct: 410 SER---KLKFSNRFLPVASPFHSHLLV-PASDLINKDLVKNNVSFNAK---------DIQ 456
Query: 261 EAIHHFFKSPWWVDLK-------QSLVDT-------WEFAQQHGWYETWSQIVELGDPFG 306
++ F DL+ + +VD WE Q T I++ G P G
Sbjct: 457 IPVYDTFD---GSDLRVLSGSISERIVDCIIRLPVKWETTTQFK--ATH--ILDFG-PGG 508
Query: 307 EQNAFKVLGLAH-TARQSE 324
GL T R +
Sbjct: 509 ------ASGLGVLTHRNKD 521
Score = 40.8 bits (95), Expect = 7e-04
Identities = 52/349 (14%), Positives = 86/349 (24%), Gaps = 130/349 (37%)
Query: 11 NYVTSRTYNNSDKTKVH-------AEKSLYITYLLWLVGGIFGVHHFYLGRDIQGFLWWC 63
NY+T+R K + IFG G QG
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA------IFG------G---QG----- 164
Query: 64 TLGGYFGFGWLRDIFHI-QNYVADANKDRDYLDKFNHNLRSYKYPPFSTIRF--TGMTVV 120
YF LRD++ V D + L + G+ ++
Sbjct: 165 NTDDYFE--ELRDLYQTYHVLV------GDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 121 AYLWSTVVSMAIPEEDIGGLPWKYLHFLL--PIACALGVWSVGNIGHETGTIWWCLAAAY 178
W S P++D +LL PI+C L IG
Sbjct: 217 E--WLENPSNT-PDKD----------YLLSIPISCPL-------IG----------VIQL 246
Query: 179 ACYPVYWYVDESTACTVMVLASALAFDTLSKRWQTKPKPRKRFLRRCLT------IGACA 232
A Y V ++ L + T + A A
Sbjct: 247 AHYVV--------TAKLLGFTPGELRSYL----------------KGATGHSQGLVTAVA 282
Query: 233 LLYSSLWGSYLYFNAKITDGEGEEIPLNEAIHHFFKSPWWVDLKQSLVDTWEFAQQ-HGW 291
+ + W S+ + + + +AI F ++ ++ + +
Sbjct: 283 IAETDSWESF-FVSVR------------KAITVLF----FIGVR---------CYEAYPN 316
Query: 292 YETWSQIVELGDPFGEQNA---FKVLGLAHTARQSEINSACRHLSVKYH 337
I+E E + L Q +N HL
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Score = 37.3 bits (86), Expect = 0.009
Identities = 24/157 (15%), Positives = 43/157 (27%), Gaps = 46/157 (29%)
Query: 79 HIQNYVADANKDRDY--------LDKFNHNLRSYKYP--------PFS------TIRFTG 116
+ ++ N ++ L N LR K P PFS + RF
Sbjct: 365 QV--EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-- 420
Query: 117 MTVVA-----YLWSTVVSMAIPEEDIGGLPWKYLHFLLPIACALGVWSVG---NIGHETG 168
+ V + L + + + + +P V+ ++ +G
Sbjct: 421 LPVASPFHSHLL-VPASDLINKDLVKNNVSFNAKDIQIP------VYDTFDGSDLRVLSG 473
Query: 169 TIWWCLAAAYACYPVYWYVDESTACTVMVLASALAFD 205
+I + PV W T L F
Sbjct: 474 SISERIVDCIIRLPVKW-----ETTTQFKATHILDFG 505
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 36.5 bits (84), Expect = 0.002
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 298 IVELGDPFGEQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAK----SDEEKQHNQSK 353
+ L + +K + L + + + + + HPDK + S +K +
Sbjct: 30 LSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKV 89
Query: 354 FYEIQQACELLSNKHA 369
F +Q+A + +
Sbjct: 90 FELLQEAWDHFNTLGP 105
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 37.7 bits (87), Expect = 0.002
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 13/66 (19%)
Query: 308 QNAFKVLGLAHTAR-------QSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQA 360
+++ + QS + R L ++HPD A+ E + + QA
Sbjct: 11 STFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSE------QSSTLNQA 64
Query: 361 CELLSN 366
L +
Sbjct: 65 YHTLKD 70
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 37.8 bits (87), Expect = 0.002
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 307 EQNAFKVLGLAHTAR--QSEINSACRHLSVKYHPDK--AKSDEEKQHNQSKFYEIQQACE 362
++ F ++ + R +++ + L HPD +S EK ++ + A +
Sbjct: 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYK 101
Query: 363 LLSN 366
L
Sbjct: 102 TLLA 105
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.003
Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 15/105 (14%)
Query: 1 MSRKHNSSDTNYVTSRTYNNSDKTKVHAEKSLYITYLLWLVGGIFGVHHFYLGRDIQGFL 60
H S +Y +T+++ D + ++ Y +G HH +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-----YFYSHIG-----HHLKNIEHPERMT 491
Query: 61 WWCTLGGYFGFGWLRDIFHIQNYVADANKDRDYLDKFNHNLRSYK 105
+ + + F +L I++ N L+ L+ YK
Sbjct: 492 LFRMV--FLDFRFLEQ--KIRHDSTAWNASGSILNTLQ-QLKFYK 531
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.22
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 17/36 (47%)
Query: 307 EQNAFKVLGLAHTARQSEINSACRHLSVK-YHPDKA 341
E+ A K L Q+ S+K Y D A
Sbjct: 18 EKQALKKL-------QA---------SLKLYADDSA 37
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 29.4 bits (65), Expect = 1.8
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 253 EGEEIPLN--EAIHHFFKSPWWVDLKQSLVDTWEFAQQHGWYETWSQIVELGDPFGEQ 308
GE + L + + + L++T F + + W+ W+ + D F ++
Sbjct: 190 PGETVNLPFVMVLRNVY---------IMLINTIIFLKTNNWHAGWNTLSFCNDVFKQK 238
>2phc_B Uncharacterized protein PH0987; structural genomics, southeas
collaboratory for structural genomics, secsg, PSI,
protein initiative; 2.29A {Pyrococcus horikoshii} SCOP:
b.62.1.4 d.74.5.1
Length = 225
Score = 28.9 bits (65), Expect = 2.2
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 298 IVELGDPFGEQNAFKVLGLAHTARQS------EINSACRHLSVKYHPDKAKSDE 345
++ GD E+ +V LA + E+ A L V Y P KA +E
Sbjct: 12 LISFGDEISEEINDRVHSLAKAIEKESPEWLVELVPAYSSLLVIYDPLKASYEE 65
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A
{Geobacillus stearothermophilus} PDB: 3ayg_A*
Length = 800
Score = 28.1 bits (62), Expect = 6.0
Identities = 23/147 (15%), Positives = 37/147 (25%), Gaps = 12/147 (8%)
Query: 37 LLWLVGGIFGVHHFYLGRDIQGFLWWCTLGGYFGFGWLRDIFHIQNYVADANKDRDYLDK 96
+ W+ G+ F L F W + + + YL
Sbjct: 360 IFWIATAWLGMGIFIAPLVGGQEPKKQGLLVDLLF-WALVVLVGGSMIGQWLGVNGYLGN 418
Query: 97 FNHNLRSYKYPPFSTIRFT--GMTVVAYLWSTVVSMAI-----PEEDIGGLPWKYLHFLL 149
L + R + V LW +V + E D GGL + +
Sbjct: 419 EWFLLGHQGWEYIELGRIWQIILVVGMLLWLFIVFRGVKRGLKRESDKGGLIHLLFYSAI 478
Query: 150 PIAC----ALGVWSVGNIGHETGTIWW 172
+ A + N WW
Sbjct: 479 AVPFFYIFAFFIQPDTNFTMADFWRWW 505
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell
WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus
aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Length = 263
Score = 27.0 bits (60), Expect = 9.6
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 214 KPKPRKRFLRRCLTIGACALLYSSLWGSYLYFNAKITD 251
KP +K+ R L I L+ +L+ +YF + +
Sbjct: 26 KPPKKKKSKRILLKILLTILIIIALFIGIMYFLSTRDN 63
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.455
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,064,048
Number of extensions: 361531
Number of successful extensions: 654
Number of sequences better than 10.0: 1
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 55
Length of query: 379
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 284
Effective length of database: 4,049,298
Effective search space: 1150000632
Effective search space used: 1150000632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)