RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8728
(379 letters)
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 53.4 bits (128), Expect = 8e-10
Identities = 15/66 (22%), Positives = 27/66 (40%)
Query: 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSN 366
+ +K +G+A ++ R + HPDKA +Q+ + F E+ A N
Sbjct: 32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 91
Query: 367 KHAKRR 372
+ K
Sbjct: 92 QGQKPL 97
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 48.9 bits (116), Expect = 3e-08
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 307 EQNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSD---EEKQHNQSKFYEIQQACEL 363
+++ + +LG +A S++ + L + YHPDK +D + KF EI QA ++
Sbjct: 15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKI 74
Query: 364 LSNKHAKRRQKNQRS 378
L N+ K++ QRS
Sbjct: 75 LGNEETKKKYDLQRS 89
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 46.2 bits (109), Expect = 1e-07
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 309 NAFKVLGLAHTAR--QSEINSACRHLSVKYHPDKAK--SDEEKQHNQSKFYEIQQACELL 364
+ F + GL + ++ + L +YHPDK S E+ + I QA + L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 365 SNKHAKRR 372
+ +
Sbjct: 62 RHPLMRAE 69
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 42.7 bits (100), Expect = 3e-06
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNK 367
+ V+ A +SE R L +K+HPD K+ E F +Q L K
Sbjct: 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPD--KNPENHDIANEVFKHLQNEINRLE-K 72
Query: 368 HAKRRQKNQRSQ 379
A Q R+
Sbjct: 73 QAFLDQNADRAS 84
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 41.9 bits (98), Expect = 4e-06
Identities = 22/65 (33%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNK 367
Q+ +++LG++ TA + EI A + L++KYHPD+ + D+ ++KF EI++A E+L++
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK---EAEAKFKEIKEAYEVLTDS 59
Query: 368 HAKRR 372
+
Sbjct: 60 QKRAA 64
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 42.3 bits (99), Expect = 4e-06
Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 9/73 (12%)
Query: 308 QNAFKVLGLAHTARQS--EINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLS 365
+ ++L L + A + S+ HPDK + + E+
Sbjct: 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG-------SHALMQELNSLWGTFK 63
Query: 366 NKHAKRRQKNQRS 378
+ R +
Sbjct: 64 TEVYNLRMNLGGT 76
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 33.5 bits (76), Expect = 0.005
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 308 QNAFKVLGLAHTARQSEINSACRHLSVKYHPDKAKSDEEKQHNQSKFYEIQQACELLSNK 367
++ ++ LGLA A EI A R +++YHPDK K + KF EI +A ++LS+
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP----GAEEKFKEIAEAYDVLSDP 58
Query: 368 HAKRRQKNQ 376
KR ++
Sbjct: 59 R-KREIFDR 66
>d2phcb2 d.74.5.1 (B:2-85) Uncharacterized protein PH0987
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 84
Score = 29.7 bits (67), Expect = 0.13
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 298 IVELGDPFGEQNAFKVLGLAHTARQS------EINSACRHLSVKYHPDKAKSDEEKQH 349
++ GD E+ +V LA + E+ A L V Y P KA +E + +
Sbjct: 11 LISFGDEISEEINDRVHSLAKAIEKESPEWLVELVPAYSSLLVIYDPLKASYEEVESY 68
>d1nekb1 a.1.2.1 (B:107-238) Succinate dehydogenase {Escherichia
coli [TaxId: 562]}
Length = 132
Score = 28.0 bits (61), Expect = 0.98
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 165 HETGTIWWCLAAAYACYPVYWYVDESTACTVMVLASALAFDTLSKRWQTKPKPRKR--FL 222
C + +C +W D+ ++ A D+ ++ +
Sbjct: 38 DGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSV 97
Query: 223 RRCLTIGAC 231
RC +I C
Sbjct: 98 FRCHSIMNC 106
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 27.3 bits (60), Expect = 2.9
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 11/55 (20%)
Query: 253 EGEEIPLN--EAIHHFFKSPWWVDLKQSLVDTWEFAQQHGWYETWSQIVELGDPF 305
GE + L + + + L++T F + + W+ W+ + D F
Sbjct: 183 PGETVNLPFVMVLRNVY---------IMLINTIIFLKTNNWHAGWNTLSFCNDVF 228
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 26.1 bits (57), Expect = 8.6
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 12/48 (25%)
Query: 253 EGEEIPLN--EAIHHFFKSPWWVDLKQSLVDTWEFAQQHG-WYETWSQ 297
GE + L AI + L +T + Q G W E W Q
Sbjct: 178 PGERLDLAMLAAIRRVYGL---------LANTVRYLQCGGSWREDWGQ 216
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.455
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,544,090
Number of extensions: 73922
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 17
Length of query: 379
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,213,086
Effective search space: 354221112
Effective search space used: 354221112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.2 bits)