BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8729
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKD|A Chain A, Nmr-Structure Of Tryparedoxin 1
Length = 154
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 30 AEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXX 89
+G V K L+ +++ YFSA WCPPC+ FTPQLIE Y K E FE++F
Sbjct: 17 GDGEVEVKSLA----GKLVFFYFSASWCPPCRGFTPQLIEFYDKFHE-SKNFEVVFCTWD 71
Query: 90 XXXXXXXXXXXGMPWPAIPYA-SETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEAR 148
MPW A+P+A SE Q L+ +NV IP+LI + ++G DV+TT AR
Sbjct: 72 EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSG---DVVTTRAR 128
Query: 149 HELSEDPDGEFFPW 162
L +DP+GE FPW
Sbjct: 129 ATLVKDPEGEQFPW 142
>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I
Length = 153
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 30 AEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXX 89
+G V K L+ +++ YFSA WCPPC+ FTPQLIE Y K E FE++F
Sbjct: 16 GDGEVEVKSLA----GKLVFFYFSASWCPPCRGFTPQLIEFYDKFHE-SKNFEVVFCTWD 70
Query: 90 XXXXXXXXXXXGMPWPAIPYA-SETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEAR 148
MPW A+P+A SE Q L+ +NV IP+LI + ++G DV+TT AR
Sbjct: 71 EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSG---DVVTTRAR 127
Query: 149 HELSEDPDGEFFPW 162
L +DP+GE FPW
Sbjct: 128 ATLVKDPEGEQFPW 141
>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From Crithidia
Fasciculata
Length = 146
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 30 AEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXX 89
+G V K L+ +++ YFSA WCPPC+ FTPQLIE Y K E FE++F
Sbjct: 17 GDGEVEVKSLA----GKLVFFYFSASWCPPCRGFTPQLIEFYDKFHE-SKNFEVVFCTWD 71
Query: 90 XXXXXXXXXXXGMPWPAIPYA-SETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEAR 148
MPW A+P+A SE Q L+ +NV IP+LI + ++G DV+TT AR
Sbjct: 72 EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSG---DVVTTRAR 128
Query: 149 HELSEDPDGEFFPW 162
L +DP+GE FPW
Sbjct: 129 ATLVKDPEGEQFPW 142
>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata
pdb|1O7U|A Chain A, Radiation Induced Tryparedoxin-I
pdb|1O85|A Chain A, Radiation-Reduced Tryparedoxin-I
pdb|1O8W|A Chain A, Radiation-Reduced Tryparedoxin-I
Length = 146
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 30 AEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXX 89
+G V K L+ +++ YFSA WCPPC+ FTPQLIE Y K E FE++F
Sbjct: 17 GDGEVEVKSLA----GKLVFFYFSASWCPPCRGFTPQLIEFYDKFHE-SKNFEVVFCTWD 71
Query: 90 XXXXXXXXXXXGMPWPAIPYA-SETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEAR 148
MPW A+P+A SE Q L+ +NV IP+LI + ++G DV+TT AR
Sbjct: 72 EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSG---DVVTTRAR 128
Query: 149 HELSEDPDGEFFPW 162
L +DP+GE FPW
Sbjct: 129 ATLVKDPEGEQFPW 142
>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major
Length = 165
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 67/120 (55%), Gaps = 5/120 (4%)
Query: 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMP 103
S + + YFSA WCPPC+ FTPQL+E Y K D FEII MP
Sbjct: 47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEK-HHDSKNFEIILASWDEEEDDFNAYYAKMP 105
Query: 104 WPAIPYASET-RQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPW 162
W +IP+A+ ++L Y+V IP+LI L + G D +TT ARH L++DP GE FPW
Sbjct: 106 WLSIPFANRNIVEALTKKYSVESIPTLIGLNADTG---DTVTTRARHALTQDPMGEQFPW 162
>pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala
Length = 146
Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 75/134 (55%), Gaps = 9/134 (6%)
Query: 30 AEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXX 89
+G V K L+ +++ YFSA WCPP + FTPQLIE Y K E FE++F
Sbjct: 17 GDGEVEVKSLA----GKLVFFYFSASWCPPARGFTPQLIEFYDKFHE-SKNFEVVFCTWD 71
Query: 90 XXXXXXXXXXXGMPWPAIPYA-SETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEAR 148
MPW A+P+A SE Q L+ +NV IP+LI + ++G DV+TT AR
Sbjct: 72 EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSG---DVVTTRAR 128
Query: 149 HELSEDPDGEFFPW 162
L +DP+GE FPW
Sbjct: 129 ATLVKDPEGEQFPW 142
>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
pdb|1O6J|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
Length = 150
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 9/121 (7%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWP 105
+ + YFSA WCPPC+AFTPQLI+ Y+ E FE++ + MPW
Sbjct: 30 KTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKK-NFEVMLISWDESAEDFKDYYAKMPWL 88
Query: 106 AIPYASETRQSLASL---YNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPW 162
A+P+ E R+ + L ++V IP+L+ + ++G ++ITT+AR + +DP+ + FPW
Sbjct: 89 ALPF--EDRKGMEFLTTGFDVKSIPTLVGVEADSG---NIITTQARTMVVKDPEAKDFPW 143
Query: 163 P 163
P
Sbjct: 144 P 144
>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii
pdb|1FG4|B Chain B, Structure Of Tryparedoxin Ii
Length = 149
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 9/121 (7%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWP 105
+ + YFSA WCPPC+AFTPQLI+ Y+ E FE++ + MPW
Sbjct: 29 KTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKK-NFEVMLISWDESAEDFKDYYAKMPWL 87
Query: 106 AIPYASETRQSLASL---YNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPW 162
A+P+ E R+ + L ++V IP+L+ + ++G ++ITT+AR + +DP+ + FPW
Sbjct: 88 ALPF--EDRKGMEFLTTGFDVKSIPTLVGVEADSG---NIITTQARTMVVKDPEAKDFPW 142
Query: 163 P 163
P
Sbjct: 143 P 143
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 9/121 (7%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWP 105
+ + YFSA WCPPC+AFTPQLI+ Y+ E FE++ + MPW
Sbjct: 32 KTVFFYFSASWCPPCRAFTPQLIDFYKAHAESK-NFEVMLISWDESAEDFKDYYAKMPWL 90
Query: 106 AIPYASETRQSLASL---YNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPW 162
A+P+ E R+ + L ++V IP+L+ + ++G ++ITT+AR + +DP+ + FPW
Sbjct: 91 ALPF--EDRKGMEFLTTGFDVKSIPTLVGVEADSG---NIITTQARTMVVKDPEAKDFPW 145
Query: 163 P 163
P
Sbjct: 146 P 146
>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1O81|B Chain B, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1OC9|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 9/121 (7%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWP 105
+ + YFSA WCPPC+AFTPQLI+ Y+ E FE++ + MPW
Sbjct: 32 KTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKK-NFEVMLISWDESAEDFKDYYAKMPWL 90
Query: 106 AIPYASETRQSLASL---YNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPW 162
A+P+ E R+ + L ++V IP+L+ + ++G ++ITT+AR + +DP+ + FPW
Sbjct: 91 ALPF--EDRKGMEFLTTGFDVKSIPTLVGVEADSG---NIITTQARTMVVKDPEAKDFPW 145
Query: 163 P 163
P
Sbjct: 146 P 146
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWP 105
+ + LYFSA WCPPC+ FTP L E Y K FE++ + MPW
Sbjct: 29 KTVFLYFSASWCPPCRGFTPVLAEFYEK-HHVAKNFEVVLISWDENESDFHDYYGKMPWL 87
Query: 106 AIPYASETRQS-LASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWP 163
A+P+ + S L + V IP+LI + + G +I T+AR + EDPDG FPWP
Sbjct: 88 ALPFDQRSTVSELGKTFGVESIPTLITINADTGA---IIGTQARTRVIEDPDGANFPWP 143
>pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine
Length = 144
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 69/121 (57%), Gaps = 9/121 (7%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWP 105
+ + YFSA WCPP +AFTPQLI+ Y+ E FE++ + MPW
Sbjct: 29 KTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKK-NFEVMLISWDESAEDFKDYYAKMPWL 87
Query: 106 AIPYASETRQSLASL---YNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPW 162
A+P+ E R+ + L ++V IP+L+ + ++G ++ITT+AR + +DP+ + FPW
Sbjct: 88 ALPF--EDRKGMEFLTTGFDVKSIPTLVGVEADSG---NIITTQARTMVVKDPEAKDFPW 142
Query: 163 P 163
P
Sbjct: 143 P 143
>pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin
Related Protein 16 And Its Role In Regulating
Transcription Factor Nf-Kb Activity
Length = 143
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGM--P 103
+IG YFSAHWCPPC+ FTP L + Y +L +D FEIIFV
Sbjct: 27 DIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGD 86
Query: 104 WPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHEL 151
W AIPY S ++ + Y + GIP+L++ V+ G L I+ R E+
Sbjct: 87 WLAIPYRSGPASNVTAKYGITGIPALVI--VKKDGTL--ISMNGRGEV 130
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 4/105 (3%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWPAIPY 109
L F WC PCK P + Y+ K G + + V G+ +P +
Sbjct: 31 LNFWGTWCEPCKKQFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVV-- 88
Query: 110 ASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSED 154
+T + + Y+V +P+ L+ E G + V+T + D
Sbjct: 89 -LDTDRQVLDAYDVSPLPTTFLINPE-GKVVKVVTGTMTESMIHD 131
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 4/105 (3%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWPAIPY 109
L F WC PCK P + Y+ K G + + V G+ +P +
Sbjct: 31 LNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVV-- 88
Query: 110 ASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSED 154
+T + + Y+V +P+ L+ E G + V+T + D
Sbjct: 89 -LDTDRQVLDAYDVSPLPTTFLINPE-GKVVKVVTGTMTESMIHD 131
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 4/105 (3%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWPAIPY 109
L F WCP CK P + Y+ K G + + V G+ +P +
Sbjct: 31 LNFWGTWCPHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVV-- 88
Query: 110 ASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSED 154
+T + + Y+V +P+ L+ E G + V+T + D
Sbjct: 89 -LDTDRQVLDAYDVSPLPTTFLINPE-GKVVKVVTGTMTESMIHD 131
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange Protein,
Thioredoxin Family Protein From Chlorobium Tepidum Tls
Length = 165
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWPAIPY 109
+ F A WCPPC++ P ++ + G+ F I V G+ +P
Sbjct: 39 VNFFATWCPPCRSEIPDXVQVQKTWASRGFTFVGIAVNEQLPNVKNYXKTQGIIYPVXXA 98
Query: 110 ASETRQSLASLYN--VHGIPSLILLAVEAGGRLDVITTEARHELSED 154
E ++ + + GIP+ + ++A G + + R + D
Sbjct: 99 TPELIRAFNGYIDGGITGIPTSFV--IDASGNVSGVIVGPRSKADFD 143
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWPAIPY 109
L F WC PCK P Y+ K G + + V G+ +P +
Sbjct: 31 LNFWGTWCEPCKKEFPYXANQYKHFKSQGVEIVAVNVGESKIAVHNFXKSYGVNFPVV-- 88
Query: 110 ASETRQSLASLYNVHGIPSLILLAVE 135
+T + + Y+V +P+ L+ E
Sbjct: 89 -LDTDRQVLDAYDVSPLPTTFLINPE 113
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 33.5 bits (75), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 4/105 (3%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWPAIPY 109
L F WC CK P + Y+ K G + + V G+ +P +
Sbjct: 28 LNFWGTWCEHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVV-- 85
Query: 110 ASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSED 154
+T + + Y+V +P+ L+ E G + V+T + D
Sbjct: 86 -LDTDRQVLDAYDVSPLPTTFLINPE-GKVVKVVTGTMTESMIHD 128
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 33.1 bits (74), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKL 74
S ++I + F+A WCPPCK P E +K
Sbjct: 25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKF 55
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 4/105 (3%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWPAIPY 109
L F WC P K P + Y+ K G + + V G+ +P +
Sbjct: 31 LNFWGTWCEPAKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVV-- 88
Query: 110 ASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSED 154
+T + + Y+V +P+ L+ E G + V+T + D
Sbjct: 89 -LDTDRQVLDAYDVSPLPTTFLINPE-GKVVKVVTGTMTESMIHD 131
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 44 SCQVIGLYFSAHWCPPCKAFTPQLIE 69
S +++ L F A WC PCK +P+L+E
Sbjct: 19 SGKLVVLDFFATWCGPCKMISPKLVE 44
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 44 SCQVIGLYFSAHWCPPCKAFTPQLIE 69
S +++ L F A WC PCK +P+L+E
Sbjct: 24 SGKLVVLDFFATWCGPCKMISPKLVE 49
>pdb|2LRT|A Chain A, Solution Structure Of The Uncharacterized Thioredoxin-Like
Protein Bvu_1432 From Bacteroides Vulgatus
Length = 152
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWP 105
+V+ + F+ + A L E Y K G FEI + +PW
Sbjct: 36 KVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLDGDEHFWKTSADNLPWV 93
Query: 106 AIPYASETRQSLASLYNVHGIPSLILL 132
+ A+ S SLYNV +PS+ L+
Sbjct: 94 CVRDANGAYSSYISLYNVTNLPSVFLV 120
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 16 GGSKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLK 75
G ++K+ I + + + T VLS S + + + F A WC PCK P L E +
Sbjct: 4 GSMTDSEKSATIKVTDASFATDVLS---SNKPVLVDFWATWCGPCKMVAPVLEEIATERA 60
Query: 76 ED 77
D
Sbjct: 61 TD 62
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 35/100 (35%)
Query: 33 TVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXX 92
T+ + +S Q L+F WCPPCK PQ Y D + + +
Sbjct: 22 TIEGEDISIPNKGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQN 81
Query: 93 XXXXXXXXGMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
P +++ L Y++ IP+ LL
Sbjct: 82 QQVVEDFIKANKLTFPIVLDSKGELXKEYHIITIPTSFLL 121
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGM 102
++ V+ L F A WC PC+ P + K K G+Q ++ V +
Sbjct: 26 KTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQ--VVAVNLDAKTGDAXKFLAQV 83
Query: 103 PWPAIPYASETRQSLASLYNVHGIPSLILL 132
P A + + LY V G P+ L+
Sbjct: 84 P-AEFTVAFDPKGQTPRLYGVKGXPTSFLI 112
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin
C From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin
C From M. Tb
Length = 116
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKED 77
++K+ I + + + T VLS S + + + F A WC PCK P L E + D
Sbjct: 4 SEKSATIKVTDASFATDVLS---SNKPVLVDFWATWCGPCKMVAPVLEEIATERATD 57
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza
Sativa
Length = 130
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKL 74
E+ +V+ + F+A WC PC+ P E +K
Sbjct: 34 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKF 65
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIE 69
+++ FSA WC PCK P IE
Sbjct: 47 KIVLANFSARWCGPCKQIAPYYIE 70
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFV 86
F A WC CKA P+ + KLK +G + + V
Sbjct: 31 FYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKV 65
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 22 KKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKL 74
K+ ++ +A G T K++ + F+A WC PC+ P E +K
Sbjct: 14 KQEFDTHMANGKDTGKLVI---------IDFTASWCGPCRVIAPVFAEYAKKF 57
>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange
Protein From Bacteroides Sp.
pdb|4GRF|A Chain A, Crystal Structure Of Thioredoxin Domain Of Thiol-Disulfide
Oxidoreductase Bvu-2223 (Target Efi-501010) From
Bacteroides Vulgatus
Length = 152
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 47 VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWPA 106
++ +F+ C C+ TP L++TY K+ G+ + W
Sbjct: 33 LVDFWFAG--CSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQ 90
Query: 107 IPYASETRQSLASLYNVHGIPSLILLAVEA 136
+ + + + Y + G P +IL+ E
Sbjct: 91 VLLQKDDVKDVLESYCIVGFPHIILVDPEG 120
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 36/154 (23%)
Query: 40 SYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXX 99
+++ + L F A WC CK F P+ + LK+
Sbjct: 27 NFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKD----------------------- 63
Query: 100 XGMPWPAIPYASETRQSLASLYNVHGIPSLILL----AVE-AGGRLDVITTEARHELSED 154
P P + + LAS ++V G P++ +L AV+ G R E+S+
Sbjct: 64 KDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQAVDYEGSRTQEEIVAKVREVSQ- 122
Query: 155 PDGEFFPW--PPKLVNVLSPRHCPKLYDSPALIL 186
PD W PP++ VL+ + ++ + +IL
Sbjct: 123 PD-----WTPPPEVTLVLTKENFDEVVNDADIIL 151
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKL 74
ES ++ + F+A WC PC+ P + +KL
Sbjct: 36 ESKTLVVVDFTASWCGPCRFIAPFFADLAKKL 67
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From
Litopenaeus Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From
Litopenaeus Vannamei
Length = 105
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKE 76
+++ + F A WC PCK P+L E + + +
Sbjct: 21 KLVVIDFYATWCGPCKMIAPKLEELSQSMSD 51
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 48 IGLYFSAHWCPPCKAFTPQLIETYRKLKED 77
I + F+ WC PCK P E +++ D
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEMASQMEGD 49
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIE 69
I L E + T VL ++ I + F A WC PCK P L E
Sbjct: 5 IHLTEDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDE 44
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQ 66
QV+ + F A WCPPC+ P
Sbjct: 29 QVVIVNFWATWCPPCREEIPS 49
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 35 TTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKE 76
T YI+S ++ F A WC CK P+ ++ L E
Sbjct: 21 TDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE 62
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFV 86
I + F+A WC PCK P L ET + Y ++IF+
Sbjct: 27 IVVAFTATWCGPCKMIAP-LFETL----SNDYAGKVIFL 60
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 52 FSAHWCPPCKAFTPQL 67
F A WC PCK P+L
Sbjct: 38 FHAQWCGPCKILGPRL 53
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
Query: 55 HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFV 86
WC PCKA P+ Y KL E+ ++IF+
Sbjct: 47 QWCGPCKAMAPK----YEKLAEE--YLDVIFL 72
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFV 86
F+A WC PCK P L ET + Y ++IF+
Sbjct: 31 FTATWCGPCKMIAP-LFETL----SNDYAGKVIFL 60
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
Query: 55 HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFV 86
WC PCKA P+ Y KL E+ ++IF+
Sbjct: 35 QWCGPCKAMAPK----YEKLAEE--YLDVIFL 60
>pdb|2IZW|A Chain A, Crystal Structure Of Ryegrass Mottle Virus
pdb|2IZW|B Chain B, Crystal Structure Of Ryegrass Mottle Virus
pdb|2IZW|C Chain C, Crystal Structure Of Ryegrass Mottle Virus
Length = 234
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 116 SLASLYNVHGIPSLIL--LAVEAGGRLDVITTEARHELSEDPDGEFFPW 162
++A LY+V + S+ + L GG I + R LS DP+ PW
Sbjct: 132 AMAMLYDVADVTSITIERLMQTRGGTWGPIWSPTRKRLSYDPEHASLPW 180
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 40 SYIESCQVIGLYFSAHWCPPCKAFTP---QLIETYRKL 74
S I +++ + F A WC PCK P + +TY K+
Sbjct: 21 SIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKM 58
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 54 AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFV 86
A WC PC+ P L E KL G FE++ +
Sbjct: 69 ATWCVPCRKEMPALDELQGKLS--GPNFEVVAI 99
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 50 LYFSAHWCPPCKAFTPQLIET 70
+ F A WC PC++F P ET
Sbjct: 60 IDFWAPWCGPCRSFAPIFAET 80
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 46 QVIGLYFSAHWCPPCKAFTP 65
Q + +YF A WC PC+ +P
Sbjct: 26 QPVLVYFWASWCGPCQLMSP 45
>pdb|3HZ8|A Chain A, Crystal Structure Of The Oxidized T176v Dsba1 Mutant
Length = 193
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 28 GLAEG---TVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGY 79
GL EG TV + ++ +V L F ++CP C P L + + K+D Y
Sbjct: 4 GLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMY 58
>pdb|3DVW|A Chain A, Crystal Structure Of Reduced Dsba1 From Neisseria
Meningitidis
Length = 193
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 28 GLAEG---TVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGY 79
GL EG TV + ++ +V L F ++CP C P L + + K+D Y
Sbjct: 4 GLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMY 58
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 40 SYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKED 77
+++ + L F A WC CK F P+ + LK++
Sbjct: 29 NFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDN 66
>pdb|3A3T|A Chain A, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|B Chain B, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|C Chain C, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|D Chain D, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|E Chain E, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|F Chain F, The Oxidoreductase Nmdsba1 From N. Meningitidis
Length = 210
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 28 GLAEG---TVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGY 79
GL EG TV + ++ +V L F ++CP C P L + + K+D Y
Sbjct: 21 GLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMY 75
>pdb|3FFK|A Chain A, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
pdb|3FFK|D Chain D, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
Length = 377
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 103 PWPAIPYASE-------TRQSLASLYNVH---GIPSLILLAVEAGGRLDVITTEARHELS 152
P PA+P +E + LA LY V G S+ L+A E + +E L
Sbjct: 227 PKPALPAGTEDTAKEDAANRKLAKLYKVSNGAGTMSVSLVADENPFAQGALKSEDCFILD 286
Query: 153 EDPDGEFFPWPPKLVNV 169
DG+ F W K N
Sbjct: 287 HGKDGKIFVWKGKQANT 303
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 40 SYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGY 79
S++ S ++ + F A WC PC P + E + G+
Sbjct: 11 SFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGF 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,488,868
Number of Sequences: 62578
Number of extensions: 205803
Number of successful extensions: 699
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 632
Number of HSP's gapped (non-prelim): 60
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)