Query psy8729
Match_columns 190
No_of_seqs 124 out of 1564
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 17:43:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03008 TryX_like_RdCVF Trypar 99.9 1.8E-24 4E-29 156.4 9.0 109 40-153 21-136 (146)
2 cd02964 TryX_like_family Trypa 99.9 1.6E-23 3.4E-28 149.9 11.7 127 30-162 4-132 (132)
3 cd03009 TryX_like_TryX_NRX Try 99.9 2.4E-23 5.2E-28 148.6 12.3 126 31-162 5-131 (131)
4 PF13905 Thioredoxin_8: Thiore 99.9 8E-22 1.7E-26 133.1 11.6 91 45-138 1-93 (95)
5 cd02967 mauD Methylamine utili 99.9 1.3E-20 2.8E-25 131.2 11.6 111 25-145 1-111 (114)
6 cd03010 TlpA_like_DsbE TlpA-li 99.8 4.7E-20 1E-24 130.9 10.9 110 23-140 2-113 (127)
7 PF08534 Redoxin: Redoxin; In 99.8 7.8E-20 1.7E-24 132.7 10.7 116 21-143 3-130 (146)
8 PRK15412 thiol:disulfide inter 99.8 5.9E-20 1.3E-24 138.7 10.2 114 21-142 42-157 (185)
9 cd03012 TlpA_like_DipZ_like Tl 99.8 3.7E-19 8E-24 126.2 10.4 98 37-140 16-118 (126)
10 PRK14018 trifunctional thiored 99.8 5.4E-19 1.2E-23 150.5 12.8 115 19-140 33-152 (521)
11 TIGR00385 dsbE periplasmic pro 99.8 5.5E-19 1.2E-23 132.0 9.4 111 22-140 38-150 (173)
12 cd02969 PRX_like1 Peroxiredoxi 99.8 1.9E-18 4E-23 128.8 11.3 119 22-147 2-127 (171)
13 PRK03147 thiol-disulfide oxido 99.8 3.4E-18 7.3E-23 127.3 12.5 115 20-140 37-151 (173)
14 PF00578 AhpC-TSA: AhpC/TSA fa 99.8 1.9E-18 4.1E-23 121.7 10.3 113 21-140 2-121 (124)
15 KOG2501|consensus 99.8 1.2E-18 2.6E-23 125.3 8.7 105 44-152 32-138 (157)
16 TIGR02661 MauD methylamine deh 99.8 9.5E-18 2.1E-22 127.0 12.7 114 20-145 48-162 (189)
17 cd00340 GSH_Peroxidase Glutath 99.8 2.6E-18 5.6E-23 125.8 8.4 111 24-141 2-136 (152)
18 cd02966 TlpA_like_family TlpA- 99.7 2.6E-17 5.6E-22 113.2 11.0 108 27-140 2-110 (116)
19 PRK00522 tpx lipid hydroperoxi 99.7 2.6E-17 5.6E-22 122.3 11.4 114 19-140 19-143 (167)
20 PTZ00056 glutathione peroxidas 99.7 1.7E-17 3.7E-22 126.5 10.2 114 21-140 16-157 (199)
21 cd03017 PRX_BCP Peroxiredoxin 99.7 2.7E-17 5.9E-22 118.3 10.5 114 23-143 2-125 (140)
22 PLN02412 probable glutathione 99.7 1.7E-17 3.8E-22 123.2 9.1 114 21-140 6-143 (167)
23 cd03014 PRX_Atyp2cys Peroxired 99.7 4E-17 8.6E-22 118.1 10.5 113 21-141 3-123 (143)
24 PLN02399 phospholipid hydroper 99.7 4E-17 8.8E-22 126.9 11.1 115 21-141 76-214 (236)
25 cd03011 TlpA_like_ScsD_MtbDsbE 99.7 5.2E-17 1.1E-21 114.4 9.3 103 25-138 1-104 (123)
26 cd02968 SCO SCO (an acronym fo 99.7 8.3E-17 1.8E-21 116.0 10.1 115 24-142 2-138 (142)
27 PRK09437 bcp thioredoxin-depen 99.7 1.6E-16 3.4E-21 116.4 10.9 116 21-143 7-135 (154)
28 cd02970 PRX_like2 Peroxiredoxi 99.7 1.6E-16 3.4E-21 115.2 10.5 111 24-140 2-142 (149)
29 cd02971 PRX_family Peroxiredox 99.7 3.9E-16 8.4E-21 112.2 11.4 113 24-142 2-124 (140)
30 cd03018 PRX_AhpE_like Peroxire 99.7 4.4E-16 9.6E-21 113.1 11.3 114 21-140 4-126 (149)
31 TIGR02540 gpx7 putative glutat 99.7 2.2E-16 4.7E-21 115.7 9.5 115 24-144 2-136 (153)
32 PTZ00256 glutathione peroxidas 99.7 7.4E-16 1.6E-20 116.1 12.1 114 22-141 18-161 (183)
33 cd03015 PRX_Typ2cys Peroxiredo 99.7 3.5E-16 7.5E-21 116.9 10.2 117 22-144 3-136 (173)
34 PLN02919 haloacid dehalogenase 99.7 6.7E-16 1.5E-20 142.3 12.7 113 22-140 395-515 (1057)
35 TIGR03137 AhpC peroxiredoxin. 99.7 4.9E-16 1.1E-20 117.5 9.6 117 21-143 5-134 (187)
36 TIGR01626 ytfJ_HI0045 conserve 99.7 5.5E-16 1.2E-20 116.0 9.0 102 36-146 51-165 (184)
37 cd02985 TRX_CDSP32 TRX family, 99.6 9.9E-16 2.1E-20 104.9 9.0 70 44-140 14-83 (103)
38 cd02954 DIM1 Dim1 family; Dim1 99.6 1.4E-15 3.1E-20 105.2 8.8 66 44-138 13-78 (114)
39 cd02950 TxlA TRX-like protein 99.6 1.5E-15 3.2E-20 110.0 8.9 72 43-140 18-89 (142)
40 PRK13728 conjugal transfer pro 99.6 2.3E-15 4.9E-20 112.1 9.6 94 22-140 53-149 (181)
41 COG1225 Bcp Peroxiredoxin [Pos 99.6 7.7E-15 1.7E-19 106.5 11.8 119 19-144 5-136 (157)
42 PRK13190 putative peroxiredoxi 99.6 2.2E-15 4.8E-20 115.2 9.5 116 21-142 5-131 (202)
43 PRK13599 putative peroxiredoxi 99.6 2.7E-15 5.8E-20 115.6 9.4 118 21-143 5-134 (215)
44 cd03006 PDI_a_EFP1_N PDIa fami 99.6 4E-15 8.7E-20 103.4 9.1 85 25-139 10-95 (113)
45 PRK10382 alkyl hydroperoxide r 99.6 6E-15 1.3E-19 111.3 10.6 115 23-143 7-134 (187)
46 PRK15000 peroxidase; Provision 99.6 9.3E-15 2E-19 111.5 11.3 118 21-143 5-140 (200)
47 PRK13191 putative peroxiredoxi 99.6 5E-15 1.1E-19 114.2 9.5 119 21-144 10-140 (215)
48 TIGR02738 TrbB type-F conjugat 99.6 4E-15 8.7E-20 108.7 7.4 78 44-139 49-130 (153)
49 cd03003 PDI_a_ERdj5_N PDIa fam 99.6 7.9E-15 1.7E-19 99.9 8.1 78 28-138 5-82 (101)
50 PTZ00137 2-Cys peroxiredoxin; 99.6 2E-14 4.3E-19 113.3 10.7 119 21-144 71-204 (261)
51 PRK13189 peroxiredoxin; Provis 99.6 2.1E-14 4.5E-19 111.3 10.5 117 21-143 12-141 (222)
52 cd03016 PRX_1cys Peroxiredoxin 99.6 2.3E-14 5.1E-19 109.6 10.7 116 22-144 3-133 (203)
53 cd03004 PDI_a_ERdj5_C PDIa fam 99.6 1.8E-14 3.9E-19 98.6 8.6 80 29-139 6-85 (104)
54 cd02956 ybbN ybbN protein fami 99.6 1.7E-14 3.7E-19 97.2 8.0 66 44-138 11-76 (96)
55 cd02999 PDI_a_ERp44_like PDIa 99.6 1.3E-14 2.8E-19 98.9 7.4 66 44-137 17-82 (100)
56 cd03002 PDI_a_MPD1_like PDI fa 99.6 1.4E-14 3E-19 99.8 7.5 82 28-138 4-85 (109)
57 cd02963 TRX_DnaJ TRX domain, D 99.5 2.2E-14 4.8E-19 99.5 7.4 67 44-138 23-89 (111)
58 COG3118 Thioredoxin domain-con 99.5 1.2E-14 2.7E-19 114.2 6.6 83 26-138 25-107 (304)
59 KOG0910|consensus 99.5 1.8E-14 3.9E-19 103.0 6.7 67 43-138 59-125 (150)
60 PHA02278 thioredoxin-like prot 99.5 3.5E-14 7.7E-19 97.1 8.0 71 43-138 12-82 (103)
61 cd02948 TRX_NDPK TRX domain, T 99.5 5.3E-14 1.1E-18 96.2 8.7 67 43-138 15-81 (102)
62 PTZ00253 tryparedoxin peroxida 99.5 1.6E-13 3.4E-18 104.8 11.5 117 21-143 9-142 (199)
63 cd02986 DLP Dim1 family, Dim1- 99.5 9E-14 1.9E-18 95.7 8.9 67 44-138 13-79 (114)
64 cd03000 PDI_a_TMX3 PDIa family 99.5 1.4E-13 3E-18 94.3 9.4 69 44-138 14-82 (104)
65 cd02953 DsbDgamma DsbD gamma f 99.5 1.3E-13 2.8E-18 94.4 8.8 73 43-139 9-85 (104)
66 cd02996 PDI_a_ERp44 PDIa famil 99.5 1.3E-13 2.8E-18 95.1 8.8 82 28-139 5-89 (108)
67 cd02992 PDI_a_QSOX PDIa family 99.5 1.1E-13 2.3E-18 96.6 8.4 86 27-138 4-89 (114)
68 cd03005 PDI_a_ERp46 PDIa famil 99.5 1E-13 2.2E-18 94.2 8.2 67 47-139 18-84 (102)
69 cd02951 SoxW SoxW family; SoxW 99.5 2.7E-13 5.8E-18 95.9 9.3 83 43-140 11-98 (125)
70 KOG0907|consensus 99.5 1.4E-13 3.1E-18 94.4 7.2 66 44-139 20-85 (106)
71 cd02993 PDI_a_APS_reductase PD 99.5 3E-13 6.5E-18 93.5 9.0 70 44-139 20-90 (109)
72 cd02994 PDI_a_TMX PDIa family, 99.5 3E-13 6.6E-18 91.9 8.2 78 28-139 5-82 (101)
73 PRK09381 trxA thioredoxin; Pro 99.5 4E-13 8.7E-18 92.6 8.6 67 44-139 20-86 (109)
74 cd02997 PDI_a_PDIR PDIa family 99.4 4.1E-13 9E-18 91.4 8.0 71 44-139 16-86 (104)
75 PF13098 Thioredoxin_2: Thiore 99.4 4.2E-13 9.2E-18 92.8 8.1 93 43-140 3-95 (112)
76 cd02962 TMX2 TMX2 family; comp 99.4 5.9E-13 1.3E-17 97.1 8.8 67 44-138 46-118 (152)
77 TIGR01126 pdi_dom protein disu 99.4 4.7E-13 1E-17 90.7 7.6 69 44-138 12-80 (102)
78 PRK10996 thioredoxin 2; Provis 99.4 7.7E-13 1.7E-17 95.4 8.9 67 43-138 50-116 (139)
79 PLN00410 U5 snRNP protein, DIM 99.4 8.6E-13 1.9E-17 94.7 8.8 67 44-139 22-89 (142)
80 TIGR02740 TraF-like TraF-like 99.4 7.1E-13 1.5E-17 105.5 9.0 76 44-138 165-240 (271)
81 PF00085 Thioredoxin: Thioredo 99.4 1E-12 2.3E-17 89.1 8.1 79 29-138 4-82 (103)
82 PTZ00051 thioredoxin; Provisio 99.4 1.3E-12 2.7E-17 88.3 8.3 68 43-140 16-83 (98)
83 cd02998 PDI_a_ERp38 PDIa famil 99.4 1.4E-12 3.1E-17 88.7 8.6 70 44-138 17-86 (105)
84 cd03001 PDI_a_P5 PDIa family, 99.4 2.8E-12 6E-17 87.2 9.3 66 44-137 17-82 (103)
85 cd02995 PDI_a_PDI_a'_C PDIa fa 99.4 1.7E-12 3.6E-17 88.4 8.0 81 28-138 4-84 (104)
86 cd02949 TRX_NTR TRX domain, no 99.4 2.5E-12 5.4E-17 86.9 8.6 66 44-138 12-77 (97)
87 cd02965 HyaE HyaE family; HyaE 99.4 1.6E-12 3.4E-17 89.5 7.3 66 44-138 26-93 (111)
88 cd03065 PDI_b_Calsequestrin_N 99.4 1.5E-12 3.2E-17 91.3 7.0 85 25-139 10-98 (120)
89 cd02959 ERp19 Endoplasmic reti 99.4 1.2E-12 2.6E-17 91.7 6.1 71 43-140 17-89 (117)
90 PRK10606 btuE putative glutath 99.4 4.9E-12 1.1E-16 95.1 9.7 83 23-110 4-94 (183)
91 cd03013 PRX5_like Peroxiredoxi 99.4 5.3E-12 1.1E-16 92.7 9.5 117 22-144 3-137 (155)
92 cd02957 Phd_like Phosducin (Ph 99.4 3.5E-12 7.5E-17 88.7 7.8 63 45-138 24-86 (113)
93 cd02952 TRP14_like Human TRX-r 99.4 3.1E-12 6.8E-17 89.4 7.4 74 44-138 20-101 (119)
94 cd02984 TRX_PICOT TRX domain, 99.3 6.4E-12 1.4E-16 84.6 8.6 65 45-138 14-78 (97)
95 PTZ00443 Thioredoxin domain-co 99.3 5.2E-12 1.1E-16 97.7 8.5 85 25-138 31-116 (224)
96 TIGR01068 thioredoxin thioredo 99.3 1.4E-11 3E-16 83.1 8.8 66 44-138 13-78 (101)
97 cd02989 Phd_like_TxnDC9 Phosdu 99.3 8.5E-12 1.8E-16 86.8 7.8 66 43-138 20-85 (113)
98 cd02961 PDI_a_family Protein D 99.3 5.4E-12 1.2E-16 84.7 6.5 70 43-138 13-82 (101)
99 cd02955 SSP411 TRX domain, SSP 99.3 3E-11 6.5E-16 85.2 10.3 83 43-147 13-98 (124)
100 cd02975 PfPDO_like_N Pyrococcu 99.3 1.8E-11 3.8E-16 85.2 7.9 67 43-138 20-86 (113)
101 TIGR00424 APS_reduc 5'-adenyly 99.3 1.2E-11 2.5E-16 104.7 8.1 85 27-137 354-438 (463)
102 TIGR01295 PedC_BrcD bacterioci 99.3 2.6E-11 5.6E-16 85.5 8.2 76 42-138 20-100 (122)
103 KOG0190|consensus 99.3 1.3E-11 2.7E-16 104.2 7.4 94 24-147 25-118 (493)
104 TIGR01130 ER_PDI_fam protein d 99.3 6.9E-12 1.5E-16 106.5 5.9 69 44-138 17-85 (462)
105 PF02630 SCO1-SenC: SCO1/SenC; 99.3 7.5E-11 1.6E-15 88.2 10.7 118 21-141 29-168 (174)
106 PTZ00102 disulphide isomerase; 99.2 2.3E-11 5E-16 104.0 8.5 82 29-139 362-443 (477)
107 cd02987 Phd_like_Phd Phosducin 99.2 4.8E-11 1E-15 89.2 8.4 63 45-138 83-145 (175)
108 PTZ00102 disulphide isomerase; 99.2 5.1E-11 1.1E-15 101.9 8.8 84 26-138 34-117 (477)
109 KOG0908|consensus 99.2 2.7E-11 5.9E-16 92.9 5.3 70 33-131 11-80 (288)
110 PLN02309 5'-adenylylsulfate re 99.1 2.3E-10 5E-15 96.8 9.3 70 43-138 363-433 (457)
111 cd02947 TRX_family TRX family; 99.1 2E-10 4.3E-15 75.5 7.1 65 44-138 9-73 (93)
112 TIGR00411 redox_disulf_1 small 99.1 2.8E-10 6E-15 74.2 7.0 58 48-131 2-59 (82)
113 PRK00293 dipZ thiol:disulfide 99.1 3.7E-10 8E-15 98.7 7.9 71 44-139 473-546 (571)
114 KOG0190|consensus 99.1 2.4E-10 5.2E-15 96.6 6.1 89 24-143 366-454 (493)
115 cd02988 Phd_like_VIAF Phosduci 99.1 6.4E-10 1.4E-14 84.3 7.6 62 44-138 101-162 (192)
116 PTZ00062 glutaredoxin; Provisi 99.0 1.1E-10 2.4E-15 88.9 2.5 100 46-188 18-119 (204)
117 cd02973 TRX_GRX_like Thioredox 99.0 1.6E-09 3.4E-14 68.0 7.1 57 48-131 2-58 (67)
118 TIGR01130 ER_PDI_fam protein d 99.0 9.5E-10 2.1E-14 93.4 8.0 82 27-138 349-430 (462)
119 COG1999 Uncharacterized protei 99.0 7.4E-09 1.6E-13 79.4 11.7 112 26-140 49-183 (207)
120 cd02982 PDI_b'_family Protein 99.0 1.6E-09 3.4E-14 73.6 7.2 64 45-136 12-77 (103)
121 TIGR00412 redox_disulf_2 small 98.9 3.9E-09 8.4E-14 68.1 7.1 54 49-131 2-55 (76)
122 cd02958 UAS UAS family; UAS is 98.9 3.7E-09 8.1E-14 73.5 7.4 81 33-139 5-89 (114)
123 COG0450 AhpC Peroxiredoxin [Po 98.9 1.4E-08 3.1E-13 75.7 9.8 117 22-143 7-139 (194)
124 KOG1731|consensus 98.9 5.9E-10 1.3E-14 94.5 2.3 88 24-137 39-126 (606)
125 KOG4277|consensus 98.9 2.5E-09 5.4E-14 84.5 5.1 79 44-149 42-120 (468)
126 PHA02125 thioredoxin-like prot 98.9 6.8E-09 1.5E-13 66.8 6.1 51 49-131 2-52 (75)
127 cd03007 PDI_a_ERp29_N PDIa fam 98.8 9.7E-09 2.1E-13 71.4 6.5 79 27-136 4-89 (116)
128 TIGR02187 GlrX_arch Glutaredox 98.8 1.8E-08 3.9E-13 77.8 8.4 67 44-138 18-87 (215)
129 cd02960 AGR Anterior Gradient 98.8 2.7E-09 5.9E-14 75.5 3.3 77 35-140 13-92 (130)
130 KOG0912|consensus 98.8 2.2E-08 4.8E-13 79.2 6.9 71 44-138 12-82 (375)
131 KOG0191|consensus 98.8 2.6E-08 5.6E-13 83.3 7.7 66 44-137 46-111 (383)
132 TIGR02187 GlrX_arch Glutaredox 98.8 3.7E-08 7.9E-13 76.1 7.8 65 44-138 132-196 (215)
133 cd03026 AhpF_NTD_C TRX-GRX-lik 98.7 5.8E-08 1.3E-12 64.6 7.6 61 44-131 11-71 (89)
134 smart00594 UAS UAS domain. 98.7 3.7E-08 8.1E-13 69.3 6.9 82 31-138 13-97 (122)
135 PF13899 Thioredoxin_7: Thiore 98.7 2.1E-08 4.6E-13 65.6 5.3 47 41-90 13-62 (82)
136 KOG2792|consensus 98.7 2.2E-07 4.7E-12 72.0 11.2 120 25-149 120-261 (280)
137 PF13728 TraF: F plasmid trans 98.7 6.5E-08 1.4E-12 74.6 7.0 76 44-138 119-194 (215)
138 KOG0855|consensus 98.6 6.2E-07 1.3E-11 65.2 9.0 103 21-127 66-169 (211)
139 KOG0191|consensus 98.5 6.6E-07 1.4E-11 74.9 8.9 107 3-138 121-229 (383)
140 COG0526 TrxA Thiol-disulfide i 98.5 6.7E-07 1.5E-11 60.5 7.0 62 45-131 32-95 (127)
141 PF06110 DUF953: Eukaryotic pr 98.5 6.3E-07 1.4E-11 62.5 6.8 74 44-138 18-100 (119)
142 PF14595 Thioredoxin_9: Thiore 98.5 4.8E-07 1E-11 64.3 6.1 71 44-145 40-113 (129)
143 TIGR02739 TraF type-F conjugat 98.4 8.2E-07 1.8E-11 70.0 7.6 76 44-138 149-224 (256)
144 cd01659 TRX_superfamily Thiore 98.4 1.4E-06 3E-11 52.4 7.0 63 49-137 1-63 (69)
145 KOG0852|consensus 98.4 4.9E-06 1.1E-10 61.0 10.2 112 29-146 18-142 (196)
146 KOG3425|consensus 98.4 5.1E-07 1.1E-11 62.0 4.1 74 43-137 23-105 (128)
147 PRK13703 conjugal pilus assemb 98.3 1.8E-06 4E-11 67.6 7.3 76 44-138 142-217 (248)
148 TIGR02180 GRX_euk Glutaredoxin 98.3 2.4E-06 5.3E-11 55.5 6.8 60 49-131 1-60 (84)
149 TIGR02196 GlrX_YruB Glutaredox 98.3 5.4E-06 1.2E-10 52.1 6.9 55 49-131 2-56 (74)
150 PF03190 Thioredox_DsbH: Prote 98.2 3.7E-06 8E-11 61.7 5.9 80 43-145 35-118 (163)
151 COG4232 Thiol:disulfide interc 98.1 6.5E-06 1.4E-10 70.9 6.2 71 45-138 474-545 (569)
152 COG2077 Tpx Peroxiredoxin [Pos 98.1 9.3E-05 2E-09 53.2 10.6 122 19-149 19-150 (158)
153 TIGR02200 GlrX_actino Glutared 98.0 2.8E-05 6.2E-10 49.5 7.1 22 49-70 2-23 (77)
154 PF00837 T4_deiodinase: Iodoth 97.9 4.2E-05 9E-10 59.2 7.2 106 36-150 93-221 (237)
155 PRK11200 grxA glutaredoxin 1; 97.9 7.9E-05 1.7E-09 48.8 7.3 60 49-131 3-64 (85)
156 PF00462 Glutaredoxin: Glutare 97.9 7.2E-05 1.6E-09 45.6 6.6 55 49-131 1-55 (60)
157 COG2143 Thioredoxin-related pr 97.9 0.00017 3.6E-09 52.2 8.7 92 43-147 40-134 (182)
158 PF13192 Thioredoxin_3: Thiore 97.8 0.00013 2.8E-09 46.8 7.4 50 53-131 6-55 (76)
159 cd03020 DsbA_DsbC_DsbG DsbA fa 97.8 0.00031 6.7E-09 53.4 10.0 86 44-138 76-181 (197)
160 cd02991 UAS_ETEA UAS family, E 97.8 9.7E-05 2.1E-09 51.5 6.2 75 33-136 5-85 (116)
161 PRK11657 dsbG disulfide isomer 97.7 0.00037 8.1E-09 55.1 9.1 90 44-138 116-230 (251)
162 PRK10877 protein disulfide iso 97.7 0.00071 1.5E-08 52.9 10.5 87 44-138 106-211 (232)
163 cd03419 GRX_GRXh_1_2_like Glut 97.6 0.00086 1.9E-08 43.1 8.6 58 49-131 2-59 (82)
164 cd02972 DsbA_family DsbA famil 97.5 0.00061 1.3E-08 44.7 7.5 78 49-131 1-89 (98)
165 KOG0911|consensus 97.5 6.7E-05 1.4E-09 57.3 2.3 61 44-131 16-76 (227)
166 PF00255 GSHPx: Glutathione pe 97.5 0.0011 2.4E-08 45.5 8.0 60 26-89 3-62 (108)
167 cd02976 NrdH NrdH-redoxin (Nrd 97.4 0.00075 1.6E-08 42.0 6.2 55 49-131 2-56 (73)
168 KOG0914|consensus 97.4 0.00074 1.6E-08 51.6 7.0 67 44-138 143-215 (265)
169 TIGR02190 GlrX-dom Glutaredoxi 97.3 0.0014 3E-08 42.3 7.1 55 48-131 9-63 (79)
170 COG0386 BtuE Glutathione perox 97.3 0.0027 5.8E-08 45.9 8.7 73 24-100 5-84 (162)
171 TIGR02183 GRXA Glutaredoxin, G 97.3 0.001 2.2E-08 43.6 6.2 60 49-131 2-63 (86)
172 TIGR02181 GRX_bact Glutaredoxi 97.3 0.0014 3E-08 42.1 6.4 55 49-131 1-55 (79)
173 KOG0854|consensus 97.3 0.0039 8.5E-08 46.1 9.2 118 21-143 9-146 (224)
174 cd02066 GRX_family Glutaredoxi 97.2 0.0025 5.4E-08 39.3 7.2 55 49-131 2-56 (72)
175 cd03418 GRX_GRXb_1_3_like Glut 97.2 0.0023 5.1E-08 40.4 7.1 55 49-131 2-57 (75)
176 KOG1651|consensus 97.2 0.0047 1E-07 45.2 8.9 75 23-100 13-94 (171)
177 PHA03050 glutaredoxin; Provisi 97.2 0.0019 4.2E-08 44.4 6.7 61 49-131 15-75 (108)
178 TIGR02189 GlrX-like_plant Glut 97.2 0.0044 9.5E-08 41.9 8.1 58 49-131 10-67 (99)
179 cd03027 GRX_DEP Glutaredoxin ( 97.1 0.0036 7.8E-08 39.5 7.0 55 49-131 3-57 (73)
180 cd03029 GRX_hybridPRX5 Glutare 97.0 0.0054 1.2E-07 38.6 7.3 54 49-131 3-56 (72)
181 PRK11509 hydrogenase-1 operon 97.0 0.0025 5.4E-08 45.3 6.3 55 56-138 47-101 (132)
182 cd03023 DsbA_Com1_like DsbA fa 96.9 0.002 4.4E-08 46.2 5.3 31 44-74 4-34 (154)
183 TIGR03143 AhpF_homolog putativ 96.9 0.0045 9.9E-08 54.4 7.7 61 44-131 475-535 (555)
184 PRK10638 glutaredoxin 3; Provi 96.8 0.0093 2E-07 38.7 6.9 55 49-131 4-58 (83)
185 PRK10329 glutaredoxin-like pro 96.6 0.013 2.8E-07 38.0 6.8 54 49-131 3-56 (81)
186 PF05988 DUF899: Bacterial pro 96.6 0.0094 2E-07 45.5 6.8 101 27-131 49-160 (211)
187 TIGR02194 GlrX_NrdH Glutaredox 96.6 0.011 2.5E-07 37.1 6.2 53 50-131 2-54 (72)
188 PF02114 Phosducin: Phosducin; 96.6 0.0045 9.7E-08 49.3 5.2 64 44-138 145-208 (265)
189 KOG1752|consensus 96.5 0.021 4.5E-07 38.9 7.5 58 49-131 16-73 (104)
190 COG0695 GrxC Glutaredoxin and 96.5 0.016 3.5E-07 37.5 6.7 57 49-131 3-59 (80)
191 cd03028 GRX_PICOT_like Glutare 96.5 0.017 3.7E-07 38.1 7.0 49 55-131 21-69 (90)
192 PF13462 Thioredoxin_4: Thiore 96.5 0.011 2.3E-07 42.9 6.5 44 44-88 11-54 (162)
193 TIGR00365 monothiol glutaredox 96.5 0.018 3.9E-07 38.7 6.9 49 55-131 25-73 (97)
194 KOG0913|consensus 96.5 0.00053 1.1E-08 52.8 -0.8 67 44-139 39-105 (248)
195 KOG3414|consensus 96.4 0.044 9.5E-07 38.4 8.3 63 44-132 22-84 (142)
196 PRK15317 alkyl hydroperoxide r 96.3 0.013 2.8E-07 51.0 7.1 61 44-131 115-175 (517)
197 PF11009 DUF2847: Protein of u 96.2 0.059 1.3E-06 36.7 8.3 76 44-146 18-94 (105)
198 KOG2603|consensus 96.1 0.071 1.5E-06 43.0 9.3 89 24-136 40-135 (331)
199 cd03019 DsbA_DsbA DsbA family, 96.1 0.014 3E-07 43.1 5.0 34 44-77 14-47 (178)
200 PF04592 SelP_N: Selenoprotein 95.8 0.12 2.6E-06 40.1 9.2 94 44-140 25-122 (238)
201 TIGR03140 AhpF alkyl hydropero 95.7 0.037 8E-07 48.2 7.1 61 44-131 116-176 (515)
202 COG1331 Highly conserved prote 95.3 0.03 6.5E-07 49.6 4.9 82 36-138 34-119 (667)
203 PRK10824 glutaredoxin-4; Provi 95.3 0.11 2.4E-06 36.1 6.8 49 55-131 28-76 (115)
204 PTZ00062 glutaredoxin; Provisi 95.2 0.11 2.4E-06 39.8 7.2 64 40-131 108-174 (204)
205 PRK12759 bifunctional gluaredo 94.9 0.1 2.2E-06 44.3 7.0 63 49-131 4-66 (410)
206 PF02966 DIM1: Mitosis protein 94.9 0.34 7.3E-06 34.3 8.3 61 44-131 19-79 (133)
207 COG4545 Glutaredoxin-related p 94.9 0.12 2.6E-06 32.8 5.4 69 50-138 5-73 (85)
208 PRK10954 periplasmic protein d 94.1 0.057 1.2E-06 41.3 3.5 34 44-77 36-72 (207)
209 COG4312 Uncharacterized protei 94.1 0.13 2.9E-06 39.5 5.1 94 26-123 54-153 (247)
210 PF05176 ATP-synt_10: ATP10 pr 93.7 0.34 7.3E-06 38.4 7.1 121 23-147 100-236 (252)
211 cd03060 GST_N_Omega_like GST_N 93.4 0.68 1.5E-05 28.6 7.0 52 51-131 3-54 (71)
212 COG0678 AHP1 Peroxiredoxin [Po 93.1 0.27 5.8E-06 35.6 5.1 81 40-123 32-116 (165)
213 PF13848 Thioredoxin_6: Thiore 92.4 0.74 1.6E-05 33.8 7.1 67 44-138 93-162 (184)
214 TIGR03143 AhpF_homolog putativ 92.3 0.72 1.6E-05 40.7 7.9 66 44-138 365-430 (555)
215 cd03031 GRX_GRX_like Glutaredo 92.3 0.85 1.8E-05 33.1 6.9 14 56-69 15-28 (147)
216 PF05768 DUF836: Glutaredoxin- 92.0 0.35 7.5E-06 31.1 4.3 54 49-131 2-55 (81)
217 KOG1672|consensus 91.9 0.32 6.9E-06 36.8 4.4 67 43-139 82-148 (211)
218 cd02977 ArsC_family Arsenate R 91.7 0.65 1.4E-05 31.3 5.5 46 50-102 2-48 (105)
219 cd03035 ArsC_Yffb Arsenate Red 91.3 0.71 1.5E-05 31.4 5.4 47 50-103 2-49 (105)
220 cd03036 ArsC_like Arsenate Red 90.1 0.94 2E-05 31.0 5.1 44 50-100 2-46 (111)
221 PF07449 HyaE: Hydrogenase-1 e 89.6 0.88 1.9E-05 31.1 4.6 66 48-144 28-96 (107)
222 cd03041 GST_N_2GST_N GST_N fam 87.9 3.8 8.3E-05 25.7 6.6 20 50-69 3-22 (77)
223 PRK01655 spxA transcriptional 87.8 1.8 3.8E-05 30.7 5.4 47 49-102 2-49 (131)
224 PRK12559 transcriptional regul 87.6 2.4 5.3E-05 30.0 6.0 46 49-101 2-48 (131)
225 cd03032 ArsC_Spx Arsenate Redu 86.7 2.6 5.6E-05 29.0 5.6 47 49-102 2-49 (115)
226 PF01216 Calsequestrin: Calseq 86.7 5.2 0.00011 33.2 8.0 82 26-138 36-122 (383)
227 TIGR01617 arsC_related transcr 86.2 2.1 4.5E-05 29.5 4.9 46 50-102 2-48 (117)
228 cd03073 PDI_b'_ERp72_ERp57 PDI 85.8 5.3 0.00011 27.3 6.7 52 59-138 32-88 (111)
229 PF09673 TrbC_Ftype: Type-F co 83.5 4.9 0.00011 27.7 5.7 21 114-136 60-80 (113)
230 COG1651 DsbG Protein-disulfide 83.4 2.3 5E-05 33.1 4.6 33 44-76 83-115 (244)
231 cd03059 GST_N_SspA GST_N famil 83.1 5.7 0.00012 24.2 5.6 32 50-88 2-33 (73)
232 cd02983 P5_C P5 family, C-term 83.0 5.5 0.00012 28.1 6.0 67 45-138 20-92 (130)
233 PRK13344 spxA transcriptional 82.3 5.4 0.00012 28.3 5.7 47 49-102 2-49 (132)
234 TIGR03759 conj_TIGR03759 integ 81.8 9.6 0.00021 29.0 7.1 77 48-131 111-193 (200)
235 cd03033 ArsC_15kD Arsenate Red 80.6 6.2 0.00013 27.1 5.4 48 50-104 3-51 (113)
236 PF13778 DUF4174: Domain of un 80.2 17 0.00036 25.1 8.5 71 58-143 23-94 (118)
237 cd03072 PDI_b'_ERp44 PDIb' fam 79.9 12 0.00027 25.5 6.7 65 44-138 15-84 (111)
238 PHA03075 glutaredoxin-like pro 79.7 1.8 3.8E-05 30.0 2.4 30 46-75 2-31 (123)
239 cd00570 GST_N_family Glutathio 79.7 8.5 0.00018 22.5 5.4 53 51-131 3-55 (71)
240 TIGR02742 TrbC_Ftype type-F co 79.1 8.4 0.00018 27.3 5.7 22 113-136 59-80 (130)
241 PRK09301 circadian clock prote 78.8 15 0.00032 25.0 6.5 74 44-144 4-77 (103)
242 TIGR02654 circ_KaiB circadian 77.9 17 0.00037 23.9 6.5 72 46-144 3-74 (87)
243 cd03051 GST_N_GTT2_like GST_N 77.9 5.3 0.00011 24.3 4.1 55 51-131 3-57 (74)
244 PF07912 ERp29_N: ERp29, N-ter 76.6 18 0.00039 25.4 6.6 83 26-132 6-90 (126)
245 PF13743 Thioredoxin_5: Thiore 76.4 5.5 0.00012 29.6 4.5 34 51-85 2-35 (176)
246 KOG2640|consensus 76.2 0.65 1.4E-05 37.6 -0.6 31 45-75 76-106 (319)
247 PF01323 DSBA: DSBA-like thior 76.1 9.9 0.00021 28.0 5.9 40 48-89 1-40 (193)
248 cd03045 GST_N_Delta_Epsilon GS 75.6 4.9 0.00011 24.6 3.5 31 51-88 3-33 (74)
249 cd02978 KaiB_like KaiB-like fa 75.5 18 0.00038 22.9 6.2 64 48-138 3-66 (72)
250 PF13911 AhpC-TSA_2: AhpC/TSA 75.2 7.8 0.00017 26.3 4.7 53 69-125 4-56 (115)
251 cd03037 GST_N_GRX2 GST_N famil 73.4 18 0.00038 21.9 6.8 19 51-69 3-21 (71)
252 PF06053 DUF929: Domain of unk 71.6 5.9 0.00013 31.3 3.7 32 43-74 56-87 (249)
253 PF09695 YtfJ_HI0045: Bacteria 69.7 42 0.00091 24.7 9.0 98 44-147 36-144 (160)
254 cd03055 GST_N_Omega GST_N fami 68.0 29 0.00063 22.3 6.2 33 50-89 20-52 (89)
255 KOG2507|consensus 68.0 24 0.00051 30.2 6.6 24 114-139 66-89 (506)
256 KOG3170|consensus 68.0 21 0.00045 27.4 5.7 41 43-87 109-149 (240)
257 KOG0541|consensus 67.2 5.8 0.00013 29.1 2.6 83 38-123 36-122 (171)
258 COG3011 Predicted thiol-disulf 66.6 36 0.00078 24.4 6.5 64 45-138 6-70 (137)
259 TIGR00014 arsC arsenate reduct 65.6 26 0.00056 23.9 5.6 48 50-104 2-50 (114)
260 COG1393 ArsC Arsenate reductas 65.3 33 0.00072 23.7 6.1 48 49-103 3-51 (117)
261 PF13417 GST_N_3: Glutathione 63.5 32 0.0007 21.1 5.8 51 52-131 2-52 (75)
262 PF06764 DUF1223: Protein of u 62.9 52 0.0011 25.2 7.3 77 51-145 4-85 (202)
263 cd03025 DsbA_FrnE_like DsbA fa 61.4 17 0.00037 26.8 4.4 27 49-75 3-29 (193)
264 PRK13730 conjugal transfer pil 60.8 34 0.00074 26.3 5.8 69 66-137 104-172 (212)
265 cd03040 GST_N_mPGES2 GST_N fam 59.2 13 0.00028 23.0 2.9 20 50-69 3-22 (77)
266 KOG3171|consensus 59.0 22 0.00047 27.6 4.5 82 25-138 139-221 (273)
267 PF13743 Thioredoxin_5: Thiore 58.1 10 0.00023 28.1 2.7 21 114-136 136-156 (176)
268 TIGR01616 nitro_assoc nitrogen 57.1 44 0.00094 23.4 5.6 48 49-103 3-51 (126)
269 PRK10026 arsenate reductase; P 56.8 67 0.0014 23.1 6.5 49 49-104 4-53 (141)
270 PRK10853 putative reductase; P 56.7 35 0.00076 23.6 5.0 49 49-104 2-51 (118)
271 cd02981 PDI_b_family Protein D 56.7 50 0.0011 21.1 6.6 31 43-76 15-45 (97)
272 COG3019 Predicted metal-bindin 56.7 44 0.00095 24.1 5.4 33 48-89 27-59 (149)
273 cd03034 ArsC_ArsC Arsenate Red 56.5 44 0.00095 22.7 5.4 47 50-103 2-49 (112)
274 COG3634 AhpF Alkyl hydroperoxi 54.8 31 0.00068 29.1 5.1 91 4-131 85-175 (520)
275 TIGR02652 conserved hypothetic 54.5 4.5 9.7E-05 28.9 0.2 14 55-68 10-23 (163)
276 PF09654 DUF2396: Protein of u 54.3 4.4 9.6E-05 28.9 0.1 14 55-68 7-20 (161)
277 cd03056 GST_N_4 GST_N family, 53.9 26 0.00057 21.0 3.7 31 51-88 3-33 (73)
278 PF04134 DUF393: Protein of un 53.2 24 0.00052 23.7 3.7 30 52-86 2-31 (114)
279 PF09822 ABC_transp_aux: ABC-t 50.9 59 0.0013 25.7 6.1 69 37-106 18-88 (271)
280 PRK10954 periplasmic protein d 49.8 23 0.0005 26.9 3.5 17 115-131 157-173 (207)
281 PF13848 Thioredoxin_6: Thiore 49.5 18 0.00039 26.2 2.8 62 115-182 31-94 (184)
282 cd03061 GST_N_CLIC GST_N famil 48.7 75 0.0016 20.9 5.3 29 55-90 20-48 (91)
283 cd03052 GST_N_GDAP1 GST_N fami 48.4 30 0.00064 21.4 3.3 33 50-89 2-34 (73)
284 KOG4498|consensus 48.3 53 0.0012 24.9 5.0 51 35-87 40-91 (197)
285 cd03067 PDI_b_PDIR_N PDIb fami 42.3 1.1E+02 0.0024 20.9 6.3 53 47-124 21-73 (112)
286 COG3531 Predicted protein-disu 41.9 28 0.0006 26.6 2.7 29 115-146 164-192 (212)
287 PF06122 TraH: Conjugative rel 39.0 24 0.00051 29.5 2.2 22 55-76 95-116 (361)
288 cd03053 GST_N_Phi GST_N family 38.4 68 0.0015 19.4 3.8 20 50-69 3-22 (76)
289 cd03025 DsbA_FrnE_like DsbA fa 32.8 44 0.00096 24.5 2.7 22 114-137 158-179 (193)
290 cd03074 PDI_b'_Calsequestrin_C 31.9 1.7E+02 0.0037 20.2 5.0 43 47-90 22-64 (120)
291 PF03227 GILT: Gamma interfero 31.8 1.1E+02 0.0024 20.6 4.2 38 49-87 3-43 (108)
292 PF03960 ArsC: ArsC family; I 30.9 88 0.0019 21.0 3.7 43 52-103 1-46 (110)
293 PF10589 NADH_4Fe-4S: NADH-ubi 30.7 25 0.00055 19.9 0.8 22 55-76 17-38 (46)
294 KOG2244|consensus 30.1 34 0.00073 30.4 1.7 53 34-91 101-156 (786)
295 COG5429 Uncharacterized secret 27.7 1.3E+02 0.0029 23.7 4.4 72 47-131 43-119 (261)
296 PF07689 KaiB: KaiB domain; I 24.1 41 0.00088 21.8 0.9 57 53-136 4-60 (82)
297 PRK15113 glutathione S-transfe 21.2 2E+02 0.0044 21.5 4.5 56 48-110 5-62 (214)
298 cd03054 GST_N_Metaxin GST_N fa 20.6 76 0.0017 19.1 1.7 16 54-69 13-28 (72)
299 COG0266 Nei Formamidopyrimidin 20.4 31 0.00068 27.7 -0.2 9 54-62 265-273 (273)
No 1
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.91 E-value=1.8e-24 Score=156.37 Aligned_cols=109 Identities=29% Similarity=0.669 Sum_probs=94.3
Q ss_pred eeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhc-----CCcEEEEEeeCCCCHHHHHHHHhCCC--CCcccCCch
Q psy8729 40 SYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKED-----GYQFEIIFVSSDRSESSYQSYLSGMP--WPAIPYASE 112 (190)
Q Consensus 40 ~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~-----g~~~~ii~i~~d~~~~~~~~~~~~~~--~~~~~~~~~ 112 (190)
+.+ ++++++|+|||+||++|+.++|.|+++++++.++ +.++.+++|+.|.+.+.++.|+++++ |..+|+..+
T Consensus 21 s~~-kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~ 99 (146)
T cd03008 21 ARL-ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDE 99 (146)
T ss_pred HHh-CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccch
Confidence 344 7999999999999999999999999999988763 23699999999998888999999997 666777766
Q ss_pred hHHHHHHHcCCCCCCeeeeeeecCCCceEEEcccccccccc
Q psy8729 113 TRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSE 153 (190)
Q Consensus 113 ~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~~~~~~~~~ 153 (190)
....+.++|++.++|++++ ||++| +++..+++....+
T Consensus 100 ~~~~l~~~y~v~~iPt~vl--Id~~G--~Vv~~~~~~~i~~ 136 (146)
T cd03008 100 FRRELEAQFSVEELPTVVV--LKPDG--DVLAANAVDEILR 136 (146)
T ss_pred HHHHHHHHcCCCCCCEEEE--ECCCC--cEEeeChHHHHHH
Confidence 6678999999999999999 99999 8888888765543
No 2
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.91 E-value=1.6e-23 Score=149.92 Aligned_cols=127 Identities=51% Similarity=1.023 Sum_probs=106.7
Q ss_pred cCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCC-CCCccc
Q psy8729 30 AEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGM-PWPAIP 108 (190)
Q Consensus 30 ~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~-~~~~~~ 108 (190)
.|++ +...++.+ +||+++|+||++||++|+.++|.|+++++++++++.++.+++|++|.+.+++++|++++ .|..++
T Consensus 4 ~~~~-~~v~l~~~-~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~ 81 (132)
T cd02964 4 LDGE-GVVPVSAL-EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP 81 (132)
T ss_pred ccCC-ccccHHHh-CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence 3444 34444454 78999999999999999999999999999998654469999999999999999999999 466666
Q ss_pred CCc-hhHHHHHHHcCCCCCCeeeeeeecCCCceEEEccccccccccCCCCCcCCC
Q psy8729 109 YAS-ETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPW 162 (190)
Q Consensus 109 ~~~-~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~~~~~~~~~~~~~~~~~~ 162 (190)
+.. .....+.+.|++.++|++++ ||++| +++...+...+..++....|||
T Consensus 82 ~~d~~~~~~~~~~~~v~~iPt~~l--id~~G--~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 82 FEDEELRELLEKQFKVEGIPTLVV--LKPDG--DVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred cCcHHHHHHHHHHcCCCCCCEEEE--ECCCC--CEEchhHHHHHHhCcccccCCC
Confidence 544 23567888899999999999 99999 8899999888888999998887
No 3
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.90 E-value=2.4e-23 Score=148.63 Aligned_cols=126 Identities=46% Similarity=0.928 Sum_probs=105.6
Q ss_pred CCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCC
Q psy8729 31 EGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYA 110 (190)
Q Consensus 31 ~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~ 110 (190)
+.+|....++.+ ++++++|+||++||++|+.++|.++++++++.+.+.++.+++|++|.+.+++++++++++|..+++.
T Consensus 5 ~~~G~~v~l~~~-~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T cd03009 5 RNDGGKVPVSSL-EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFS 83 (131)
T ss_pred ccCCCCccHHHh-CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccC
Confidence 444555555555 7899999999999999999999999999999876557999999999999999999999988777765
Q ss_pred c-hhHHHHHHHcCCCCCCeeeeeeecCCCceEEEccccccccccCCCCCcCCC
Q psy8729 111 S-ETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPW 162 (190)
Q Consensus 111 ~-~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~~~~~~~~~~~~~~~~~~ 162 (190)
. +....+.+.|++.++|++++ ||++| +++...+.+.... ++...|||
T Consensus 84 ~~~~~~~~~~~~~v~~~P~~~l--id~~G--~i~~~~~~~~~~~-~~~~~~~~ 131 (131)
T cd03009 84 DRERRSRLNRTFKIEGIPTLII--LDADG--EVVTTDARELVLE-YGADAFPF 131 (131)
T ss_pred CHHHHHHHHHHcCCCCCCEEEE--ECCCC--CEEcccHHHHHhh-cccccCCC
Confidence 4 45678999999999999999 99999 7888887665554 88777776
No 4
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.88 E-value=8e-22 Score=133.06 Aligned_cols=91 Identities=37% Similarity=0.827 Sum_probs=82.3
Q ss_pred CcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCC--CCCcccCCchhHHHHHHHcC
Q psy8729 45 CQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGM--PWPAIPYASETRQSLASLYN 122 (190)
Q Consensus 45 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 122 (190)
||+++|+||++||++|+.++|.|.++++++++ +.++++++|+.|.+.++++++++++ +|..+++..+....+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 68999999999999999999999999999995 3579999999999999999999988 67888888888899999999
Q ss_pred CCCCCeeeeeeecCCC
Q psy8729 123 VHGIPSLILLAVEAGG 138 (190)
Q Consensus 123 v~~~P~~~l~~id~~g 138 (190)
+.++|++++ +|++|
T Consensus 80 i~~iP~~~l--ld~~G 93 (95)
T PF13905_consen 80 INGIPTLVL--LDPDG 93 (95)
T ss_dssp -TSSSEEEE--EETTS
T ss_pred CCcCCEEEE--ECCCC
Confidence 999999999 99999
No 5
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.85 E-value=1.3e-20 Score=131.16 Aligned_cols=111 Identities=21% Similarity=0.354 Sum_probs=88.8
Q ss_pred cceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCC
Q psy8729 25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPW 104 (190)
Q Consensus 25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~ 104 (190)
|+|.+.+.+|+...+....++++++|+||++||++|+.++|.++++++++.+ ++.++.++ +.+.++++.+++++++
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~---~~~vi~v~-~~~~~~~~~~~~~~~~ 76 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD---WLDVVLAS-DGEKAEHQRFLKKHGL 76 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC---CcEEEEEe-CCCHHHHHHHHHHhCC
Confidence 3566666666666666553489999999999999999999999999888754 37777775 6678899999999987
Q ss_pred CcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEEEcc
Q psy8729 105 PAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITT 145 (190)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~ 145 (190)
..+|... +..+.+.|++.++|++++ ||++| ++++.
T Consensus 77 ~~~p~~~--~~~~~~~~~~~~~P~~~v--id~~G--~v~~~ 111 (114)
T cd02967 77 EAFPYVL--SAELGMAYQVSKLPYAVL--LDEAG--VIAAK 111 (114)
T ss_pred CCCcEEe--cHHHHhhcCCCCcCeEEE--ECCCC--eEEec
Confidence 6666655 346889999999999999 99999 66654
No 6
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.83 E-value=4.7e-20 Score=130.86 Aligned_cols=110 Identities=17% Similarity=0.246 Sum_probs=89.7
Q ss_pred cccceeccCCCc--cceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHh
Q psy8729 23 KTYNIGLAEGTV--TTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS 100 (190)
Q Consensus 23 ~~~~~~l~~~~~--~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~ 100 (190)
..|+|++++.++ .....+.+ ++++++|+||++||++|+.++|.++++++++ ++++++|+.+++.+.+++|++
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~-~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-----~~~vv~v~~~~~~~~~~~~~~ 75 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADL-KGKPYLLNVWASWCAPCREEHPVLMALARQG-----RVPIYGINYKDNPENALAWLA 75 (127)
T ss_pred CCCCcccccccCCCccccHHHc-CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-----CcEEEEEECCCCHHHHHHHHH
Confidence 356777776665 33333343 6899999999999999999999999987764 388999999888999999999
Q ss_pred CCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729 101 GMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL 140 (190)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~ 140 (190)
+++....++..|....+.+.|++.++|++++ +|++|++
T Consensus 76 ~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~--ld~~G~v 113 (127)
T cd03010 76 RHGNPYAAVGFDPDGRVGIDLGVYGVPETFL--IDGDGII 113 (127)
T ss_pred hcCCCCceEEECCcchHHHhcCCCCCCeEEE--ECCCceE
Confidence 8876544555677788999999999999999 9999944
No 7
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.82 E-value=7.8e-20 Score=132.68 Aligned_cols=116 Identities=27% Similarity=0.434 Sum_probs=95.5
Q ss_pred CCcccceeccC--CCccceeeeeccCCcEEEEEEEcC-CChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHH
Q psy8729 21 AKKTYNIGLAE--GTVTTKVLSYIESCQVIGLYFSAH-WCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQS 97 (190)
Q Consensus 21 ~~~~~~~~l~~--~~~~~~~~~~~~~~k~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~ 97 (190)
+...|++++.+ .+++...++.+ +||+++|.||++ |||+|+..+|.+.++++.+++. ++.+++|+.+.+.. +++
T Consensus 3 G~~~P~~~~~~~~~~g~~~~l~~~-~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~--~v~~v~v~~~~~~~-~~~ 78 (146)
T PF08534_consen 3 GDKAPDFSLKDLDLDGKPVSLSDF-KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK--GVDVVGVSSDDDPP-VRE 78 (146)
T ss_dssp TSB--CCEEEEEETTSEEEEGGGG-TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TCEEEEEEESSSHH-HHH
T ss_pred CCCCCCeEEEeecCCCCEecHHHh-CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC--ceEEEEecccCCHH-HHH
Confidence 44567777744 77777777775 899999999999 9999999999999999998876 48889999887776 889
Q ss_pred HHhCCCCCcccCCchhHHHHHHHcCCC---------CCCeeeeeeecCCCceEEE
Q psy8729 98 YLSGMPWPAIPYASETRQSLASLYNVH---------GIPSLILLAVEAGGRLDVI 143 (190)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~P~~~l~~id~~g~~~i~ 143 (190)
|+++++. .+++..|.+..+.+.|++. ++|++++ ||++|+++..
T Consensus 79 ~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~l--Id~~G~V~~~ 130 (146)
T PF08534_consen 79 FLKKYGI-NFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFL--IDKDGKVVYR 130 (146)
T ss_dssp HHHHTTT-TSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEE--EETTSBEEEE
T ss_pred HHHhhCC-CceEEechHHHHHHHhCCccccccccCCeecEEEE--EECCCEEEEE
Confidence 9988663 5777888889999999988 9999999 9999954333
No 8
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.82 E-value=5.9e-20 Score=138.68 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=88.9
Q ss_pred CCcccceeccCCCc--cceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHH
Q psy8729 21 AKKTYNIGLAEGTV--TTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY 98 (190)
Q Consensus 21 ~~~~~~~~l~~~~~--~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~ 98 (190)
+...|+|++.+.++ ....++...++++++|+||++||++|+.++|.|+++++ + ++++++|+.+++.+.+++|
T Consensus 42 g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~--~~~vi~v~~~~~~~~~~~~ 115 (185)
T PRK15412 42 GKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----Q--GIRVVGMNYKDDRQKAISW 115 (185)
T ss_pred CCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----c--CCEEEEEECCCCHHHHHHH
Confidence 34567888877653 33333333379999999999999999999999988754 2 3789999998888889999
Q ss_pred HhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEE
Q psy8729 99 LSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDV 142 (190)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i 142 (190)
+++++.....+..|....+.+.||+.++|++++ ||++|++..
T Consensus 116 ~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~v--id~~G~i~~ 157 (185)
T PRK15412 116 LKELGNPYALSLFDGDGMLGLDLGVYGAPETFL--IDGNGIIRY 157 (185)
T ss_pred HHHcCCCCceEEEcCCccHHHhcCCCcCCeEEE--ECCCceEEE
Confidence 998875433345566778889999999999999 999995433
No 9
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.80 E-value=3.7e-19 Score=126.22 Aligned_cols=98 Identities=23% Similarity=0.293 Sum_probs=85.0
Q ss_pred eeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-----CCHHHHHHHHhCCCCCcccCCc
Q psy8729 37 KVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-----RSESSYQSYLSGMPWPAIPYAS 111 (190)
Q Consensus 37 ~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-----~~~~~~~~~~~~~~~~~~~~~~ 111 (190)
..++.+ ++++++|+||++||++|+..+|.|++++++++++ ++.+++|+.+ .+.+.+++|++++++ .+|+..
T Consensus 16 v~l~~~-~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~--~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~ 91 (126)
T cd03012 16 LSLAQL-RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD--GLVVIGVHSPEFAFERDLANVKSAVLRYGI-TYPVAN 91 (126)
T ss_pred cCHHHh-CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC--CeEEEEeccCccccccCHHHHHHHHHHcCC-CCCEEE
Confidence 333444 7899999999999999999999999999999875 5999999763 467889999999986 578888
Q ss_pred hhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729 112 ETRQSLASLYNVHGIPSLILLAVEAGGRL 140 (190)
Q Consensus 112 ~~~~~~~~~~~v~~~P~~~l~~id~~g~~ 140 (190)
|....+.+.|++.++|++++ ||++|++
T Consensus 92 D~~~~~~~~~~v~~~P~~~v--id~~G~v 118 (126)
T cd03012 92 DNDYATWRAYGNQYWPALYL--IDPTGNV 118 (126)
T ss_pred CCchHHHHHhCCCcCCeEEE--ECCCCcE
Confidence 88899999999999999999 9999954
No 10
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.80 E-value=5.4e-19 Score=150.49 Aligned_cols=115 Identities=19% Similarity=0.345 Sum_probs=97.7
Q ss_pred CCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-----CCHH
Q psy8729 19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-----RSES 93 (190)
Q Consensus 19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-----~~~~ 93 (190)
..+...|+|.+.+.++....++ +++++||+|||+||++|+.++|.|++++++++.. ++.+++|+.+ .+.+
T Consensus 33 ~~~~~lP~f~l~D~dG~~v~ls---kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~--~v~VI~Vs~~~~~~e~~~~ 107 (521)
T PRK14018 33 TVPHTLSTLKTADNRPASVYLK---KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS--SANLITVASPGFLHEKKDG 107 (521)
T ss_pred cccCCCCCeEeecCCCceeecc---CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEecccccccccHH
Confidence 3344689999999988766654 7999999999999999999999999999998754 4889998863 3456
Q ss_pred HHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729 94 SYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL 140 (190)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~ 140 (190)
.+++|++..++..+++..|.+..+.+.|++.++|++++ ||++|++
T Consensus 108 ~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~I--IDkdGkI 152 (521)
T PRK14018 108 DFQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAI--IGKDGDV 152 (521)
T ss_pred HHHHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEE--EcCCCeE
Confidence 78888888887778888888899999999999999999 9999954
No 11
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.79 E-value=5.5e-19 Score=132.04 Aligned_cols=111 Identities=23% Similarity=0.290 Sum_probs=88.4
Q ss_pred CcccceeccCCCccce-e-eeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729 22 KKTYNIGLAEGTVTTK-V-LSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL 99 (190)
Q Consensus 22 ~~~~~~~l~~~~~~~~-~-~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~ 99 (190)
...|+|++.+.++... + ++...++++++|+||++||++|+.+.|.+++++++ ++++++|+.+++.++.++|+
T Consensus 38 ~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~------~~~vi~V~~~~~~~~~~~~~ 111 (173)
T TIGR00385 38 KPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD------GLPIVGVDYKDQSQNALKFL 111 (173)
T ss_pred CCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc------CCEEEEEECCCChHHHHHHH
Confidence 4678888887666422 2 23434789999999999999999999999877542 38899999887788888999
Q ss_pred hCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729 100 SGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL 140 (190)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~ 140 (190)
+++++...++..|....+.+.|++.++|++++ ||++|++
T Consensus 112 ~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~~~--id~~G~i 150 (173)
T TIGR00385 112 KELGNPYQAILIDPNGKLGLDLGVYGAPETFL--VDGNGVI 150 (173)
T ss_pred HHcCCCCceEEECCCCchHHhcCCeeCCeEEE--EcCCceE
Confidence 98876433345677788999999999999999 9999944
No 12
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.78 E-value=1.9e-18 Score=128.83 Aligned_cols=119 Identities=17% Similarity=0.316 Sum_probs=101.0
Q ss_pred CcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC-------CHHH
Q psy8729 22 KKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-------SESS 94 (190)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~-------~~~~ 94 (190)
...|+|.+.+.++....++.+.+++++||+||++|||.|...++.|.++++++.+. ++.+++|+.|. +.+.
T Consensus 2 ~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~--~v~~v~is~d~~~~~~~d~~~~ 79 (171)
T cd02969 2 SPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK--GVAVVAINSNDIEAYPEDSPEN 79 (171)
T ss_pred CcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC--CeEEEEEecCccccccccCHHH
Confidence 34677888888777666666557899999999999999999999999999999865 59999999875 5789
Q ss_pred HHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEEEcccc
Q psy8729 95 YQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEA 147 (190)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~~~ 147 (190)
+++|++++++. +++..|.+..+.+.|++..+|++++ +|++| +++....
T Consensus 80 ~~~~~~~~~~~-~~~l~D~~~~~~~~~~v~~~P~~~l--id~~G--~v~~~~~ 127 (171)
T cd02969 80 MKAKAKEHGYP-FPYLLDETQEVAKAYGAACTPDFFL--FDPDG--KLVYRGR 127 (171)
T ss_pred HHHHHHHCCCC-ceEEECCchHHHHHcCCCcCCcEEE--ECCCC--eEEEeec
Confidence 99999988864 7788888889999999999999999 99999 6665443
No 13
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.78 E-value=3.4e-18 Score=127.33 Aligned_cols=115 Identities=25% Similarity=0.427 Sum_probs=98.5
Q ss_pred CCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729 20 GAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL 99 (190)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~ 99 (190)
.+...|++++.+.+++...++.+ ++++++|.||++||++|+...+.++++++++.+. ++.+++|+.|.+.++++.|+
T Consensus 37 ~g~~~p~~~~~~~~g~~~~l~~~-~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vi~i~~d~~~~~~~~~~ 113 (173)
T PRK03147 37 VGKEAPNFVLTDLEGKKIELKDL-KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK--GVEIIAVNVDETELAVKNFV 113 (173)
T ss_pred CCCCCCCcEeecCCCCEEeHHHc-CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEEcCCCHHHHHHHH
Confidence 34566788888877766555554 7899999999999999999999999999999875 48999999999999999999
Q ss_pred hCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729 100 SGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL 140 (190)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~ 140 (190)
++++. .+++..|.+..+.+.|++..+|++++ +|++|++
T Consensus 114 ~~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~l--id~~g~i 151 (173)
T PRK03147 114 NRYGL-TFPVAIDKGRQVIDAYGVGPLPTTFL--IDKDGKV 151 (173)
T ss_pred HHhCC-CceEEECCcchHHHHcCCCCcCeEEE--ECCCCcE
Confidence 98875 56666777889999999999999999 9999944
No 14
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.78 E-value=1.9e-18 Score=121.68 Aligned_cols=113 Identities=26% Similarity=0.529 Sum_probs=99.8
Q ss_pred CCcccceeccCCCccceeeeeccCCcEEEEEEEcC-CChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729 21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAH-WCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL 99 (190)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~ 99 (190)
+.+.|+|.+++.++....++.+ .+++++|.||++ ||++|+..++.|++++++++.. ++.+++|+.| +.++.+.+.
T Consensus 2 G~~~P~f~l~~~~g~~~~l~~l-~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~--~~~vi~is~d-~~~~~~~~~ 77 (124)
T PF00578_consen 2 GDKAPDFTLTDSDGKTVSLSDL-KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK--GVQVIGISTD-DPEEIKQFL 77 (124)
T ss_dssp TSBGGCEEEETTTSEEEEGGGG-TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TEEEEEEESS-SHHHHHHHH
T ss_pred cCCCCCcEeECCCCCEEEHHHH-CCCcEEEEEeCccCccccccchhHHHHHhhhhccc--eEEeeecccc-cccchhhhh
Confidence 5678999999988888888887 889999999999 9999999999999999999876 5999999996 555888888
Q ss_pred hCCCCCcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCce
Q psy8729 100 SGMPWPAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRL 140 (190)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~ 140 (190)
++++ ..+++..|....+.+.|++. .+|++++ ||++|++
T Consensus 78 ~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~l--id~~g~I 121 (124)
T PF00578_consen 78 EEYG-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFL--IDPDGKI 121 (124)
T ss_dssp HHHT-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEE--EETTSBE
T ss_pred hhhc-cccccccCcchHHHHHcCCccccCCceEeEEEE--ECCCCEE
Confidence 8777 47788888889999999998 9999999 9999944
No 15
>KOG2501|consensus
Probab=99.77 E-value=1.2e-18 Score=125.35 Aligned_cols=105 Identities=46% Similarity=0.924 Sum_probs=98.0
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhC--CCCCcccCCchhHHHHHHHc
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSG--MPWPAIPYASETRQSLASLY 121 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 121 (190)
.||++.++|.|.|||+|+.+.|.|.++|++..+.+..+.|++||.|.+.++...|+.+ ..|..+|+..+..+++.++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 7999999999999999999999999999999998888999999999999999999996 45999999999999999999
Q ss_pred CCCCCCeeeeeeecCCCceEEEccccccccc
Q psy8729 122 NVHGIPSLILLAVEAGGRLDVITTEARHELS 152 (190)
Q Consensus 122 ~v~~~P~~~l~~id~~g~~~i~~~~~~~~~~ 152 (190)
++.++|++.+ ++++| ..+...++....
T Consensus 112 ~v~~iP~l~i--~~~dG--~~v~~d~r~~v~ 138 (157)
T KOG2501|consen 112 EVKGIPALVI--LKPDG--TVVTEDARLLVQ 138 (157)
T ss_pred ccCcCceeEE--ecCCC--CEehHhhHHHHH
Confidence 9999999999 99999 888888876554
No 16
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.77 E-value=9.5e-18 Score=127.05 Aligned_cols=114 Identities=16% Similarity=0.264 Sum_probs=89.0
Q ss_pred CCCcccceeccCCCccceeee-eccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHH
Q psy8729 20 GAKKTYNIGLAEGTVTTKVLS-YIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY 98 (190)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~~~~-~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~ 98 (190)
.+...|+|++.+.+|....+. ...++++++|+||++|||+|+.++|.++++++++ ++.+++|+. ++.+++++|
T Consensus 48 vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-----~~~vv~Is~-~~~~~~~~~ 121 (189)
T TIGR02661 48 VGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-----ETDVVMISD-GTPAEHRRF 121 (189)
T ss_pred CCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc-----CCcEEEEeC-CCHHHHHHH
Confidence 455678999998887665553 2237899999999999999999999999987653 255788884 477889999
Q ss_pred HhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEEEcc
Q psy8729 99 LSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITT 145 (190)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~ 145 (190)
+++++....++. ....+.+.|++..+|+.++ ||++| +++..
T Consensus 122 ~~~~~~~~~~~~--~~~~i~~~y~v~~~P~~~l--ID~~G--~I~~~ 162 (189)
T TIGR02661 122 LKDHELGGERYV--VSAEIGMAFQVGKIPYGVL--LDQDG--KIRAK 162 (189)
T ss_pred HHhcCCCcceee--chhHHHHhccCCccceEEE--ECCCC--eEEEc
Confidence 998876433332 3568889999999999999 99999 55553
No 17
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.76 E-value=2.6e-18 Score=125.78 Aligned_cols=111 Identities=16% Similarity=0.212 Sum_probs=84.4
Q ss_pred ccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCHHHHH
Q psy8729 24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSESSYQ 96 (190)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~~~~~ 96 (190)
.++|++.+.++....++.+ +||+++|.||++||+ |+.++|.|++++++|.+. ++.+++|+.+ ++.+.++
T Consensus 2 ~~~f~l~d~~G~~v~l~~~-~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~--~~~vv~v~~~~~~~~~~~~~~~~~ 77 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKY-KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR--GLVVLGFPCNQFGGQEPGSNEEIK 77 (152)
T ss_pred cceeEEECCCCCEEeHHHh-CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC--CEEEEEeccCccccCCCCCHHHHH
Confidence 3667788877777776766 689999999999999 999999999999999876 4999999875 3457899
Q ss_pred HHHhC-CCCCcccCCchh--HHH-HHHHcC--CCCCC-----------eeeeeeecCCCceE
Q psy8729 97 SYLSG-MPWPAIPYASET--RQS-LASLYN--VHGIP-----------SLILLAVEAGGRLD 141 (190)
Q Consensus 97 ~~~~~-~~~~~~~~~~~~--~~~-~~~~~~--v~~~P-----------~~~l~~id~~g~~~ 141 (190)
.|+++ +++ .+|+..|. +.. ....|+ +.++| ++++ ||++|++.
T Consensus 78 ~f~~~~~~~-~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttfl--Id~~G~i~ 136 (152)
T cd00340 78 EFCETNYGV-TFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFL--VDRDGEVV 136 (152)
T ss_pred HHHHHhcCC-CceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEE--ECCCCcEE
Confidence 99986 664 46666432 222 344455 35666 7899 99999553
No 18
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.74 E-value=2.6e-17 Score=113.23 Aligned_cols=108 Identities=27% Similarity=0.507 Sum_probs=89.9
Q ss_pred eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCC-HHHHHHHHhCCCCC
Q psy8729 27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRS-ESSYQSYLSGMPWP 105 (190)
Q Consensus 27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~-~~~~~~~~~~~~~~ 105 (190)
+.+.+.+++...+..+ .+++++|+||++||++|+...+.|.++.+++.+ .++.+++|+.|.+ .++++.++++++ .
T Consensus 2 ~~~~~~~g~~~~~~~~-~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~~v~~d~~~~~~~~~~~~~~~-~ 77 (116)
T cd02966 2 FSLPDLDGKPVSLSDL-KGKVVLVNFWASWCPPCRAEMPELEALAKEYKD--DGVEVVGVNVDDDDPAAVKAFLKKYG-I 77 (116)
T ss_pred ccccCCCCCEeehHHc-CCCEEEEEeecccChhHHHHhHHHHHHHHHhCC--CCeEEEEEECCCCCHHHHHHHHHHcC-C
Confidence 3444555555555554 589999999999999999999999999999874 3699999999987 999999999988 4
Q ss_pred cccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729 106 AIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL 140 (190)
Q Consensus 106 ~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~ 140 (190)
.+++..+....+.+.|++.++|++++ +|++|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~P~~~l--~d~~g~v 110 (116)
T cd02966 78 TFPVLLDPDGELAKAYGVRGLPTTFL--IDRDGRI 110 (116)
T ss_pred CcceEEcCcchHHHhcCcCccceEEE--ECCCCcE
Confidence 66666777789999999999999999 9999943
No 19
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.74 E-value=2.6e-17 Score=122.33 Aligned_cols=114 Identities=11% Similarity=0.132 Sum_probs=95.1
Q ss_pred CCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCC-ChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHH
Q psy8729 19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHW-CPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQS 97 (190)
Q Consensus 19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~w-C~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~ 97 (190)
..+...|+|.+.+.++....++.+ +|++++|.||++| |++|+.+++.|+++++++. ++++++|+.| +....++
T Consensus 19 ~~G~~~P~f~l~~~~g~~v~l~~~-~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~----~~~vv~vs~D-~~~~~~~ 92 (167)
T PRK00522 19 QVGDKAPDFTLVANDLSDVSLADF-AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD----NTVVLCISAD-LPFAQKR 92 (167)
T ss_pred CCCCCCCCeEEEcCCCcEEehHHh-CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC----CcEEEEEeCC-CHHHHHH
Confidence 345677899988887776666666 7899999999999 9999999999999988872 4899999987 4567899
Q ss_pred HHhCCCCCcccCCchh-HHHHHHHcCCCCCC---------eeeeeeecCCCce
Q psy8729 98 YLSGMPWPAIPYASET-RQSLASLYNVHGIP---------SLILLAVEAGGRL 140 (190)
Q Consensus 98 ~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~P---------~~~l~~id~~g~~ 140 (190)
|.++++...+++..|. ...+++.||+...| ++++ ||++|++
T Consensus 93 f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfv--Id~~G~I 143 (167)
T PRK00522 93 FCGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFV--LDENNKV 143 (167)
T ss_pred HHHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEE--ECCCCeE
Confidence 9999987667888884 56999999998777 9999 9999944
No 20
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.74 E-value=1.7e-17 Score=126.51 Aligned_cols=114 Identities=17% Similarity=0.168 Sum_probs=86.1
Q ss_pred CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCHH
Q psy8729 21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSES 93 (190)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~~ 93 (190)
....|+|++.+.+|....++.+ +|+++||.||++||++|+.++|.|++++++|.++| +++++|+++ ++.+
T Consensus 16 ~~~~pdf~l~d~~G~~vsL~~~-kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~~~~~~~e~d~~e 92 (199)
T PTZ00056 16 RKSIYDYTVKTLEGTTVPMSSL-KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPTSQFLNQEFPNTK 92 (199)
T ss_pred CCCCCceEEECCCCCEEeHHHh-CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecchhccCCCCCCHH
Confidence 4467889998888877777776 68999999999999999999999999999998764 999999874 4568
Q ss_pred HHHHHHhCCCCCcccCCch------hHHH--------HHHHcCCC----CC---CeeeeeeecCCCce
Q psy8729 94 SYQSYLSGMPWPAIPYASE------TRQS--------LASLYNVH----GI---PSLILLAVEAGGRL 140 (190)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~------~~~~--------~~~~~~v~----~~---P~~~l~~id~~g~~ 140 (190)
++++|+++++. .+|+..+ .... +...|+.. .+ |+.++ ||++|++
T Consensus 93 ~~~~f~~~~~~-~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tfl--ID~~G~i 157 (199)
T PTZ00056 93 DIRKFNDKNKI-KYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFL--VNKSGNV 157 (199)
T ss_pred HHHHHHHHcCC-CceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEE--ECCCCcE
Confidence 89999998875 4555422 1111 22234332 23 37899 9999954
No 21
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.73 E-value=2.7e-17 Score=118.29 Aligned_cols=114 Identities=25% Similarity=0.308 Sum_probs=96.6
Q ss_pred cccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhC
Q psy8729 23 KTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSG 101 (190)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~ 101 (190)
..|+|.+.+.++....++.+ ++++++|.|| ++|||.|...++.|+++++++.+. ++.+++|+.| +.+.+++|.++
T Consensus 2 ~~p~f~l~~~~g~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vv~is~d-~~~~~~~~~~~ 77 (140)
T cd03017 2 KAPDFTLPDQDGETVSLSDL-RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL--GAVVIGVSPD-SVESHAKFAEK 77 (140)
T ss_pred CCCCccccCCCCCEEeHHHh-CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCC-CHHHHHHHHHH
Confidence 46778888888777777776 5899999999 689999999999999999999875 4899999987 56789999998
Q ss_pred CCCCcccCCchhHHHHHHHcCCCCC---------CeeeeeeecCCCceEEE
Q psy8729 102 MPWPAIPYASETRQSLASLYNVHGI---------PSLILLAVEAGGRLDVI 143 (190)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~v~~~---------P~~~l~~id~~g~~~i~ 143 (190)
++. .+++..|.+..+.+.||+... |++++ ||++|+++..
T Consensus 78 ~~~-~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~l--id~~G~v~~~ 125 (140)
T cd03017 78 YGL-PFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFL--IDPDGKIVKV 125 (140)
T ss_pred hCC-CceEEECCccHHHHHhCCccccccccCCcceeEEE--ECCCCEEEEE
Confidence 875 577888888899999999988 99999 9999954333
No 22
>PLN02412 probable glutathione peroxidase
Probab=99.73 E-value=1.7e-17 Score=123.25 Aligned_cols=114 Identities=21% Similarity=0.255 Sum_probs=85.3
Q ss_pred CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCHH
Q psy8729 21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSES 93 (190)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~~ 93 (190)
....|+|++.+.++....++.+ +++++||.||++||++|+.++|.|++++++|++.| +.+++|+.+ ++.+
T Consensus 6 ~~~~pdf~l~d~~G~~v~l~~~-~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~~~~~~~~~~~~ 82 (167)
T PLN02412 6 PKSIYDFTVKDIGGNDVSLNQY-KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCNQFLGQEPGSNE 82 (167)
T ss_pred CCCCCceEEECCCCCEEeHHHh-CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEecccccccCCCCCHH
Confidence 3567889998888876666666 78999999999999999999999999999999874 999999975 2445
Q ss_pred HHHHH-HhCCCCCcccCCch--hH-HHHHHHcC-------------CCCCCeeeeeeecCCCce
Q psy8729 94 SYQSY-LSGMPWPAIPYASE--TR-QSLASLYN-------------VHGIPSLILLAVEAGGRL 140 (190)
Q Consensus 94 ~~~~~-~~~~~~~~~~~~~~--~~-~~~~~~~~-------------v~~~P~~~l~~id~~g~~ 140 (190)
+++++ .++++. .+|+..+ .+ ......|+ +.+.|+.|+ ||++|++
T Consensus 83 ~~~~~~~~~~~~-~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tfl--Id~~G~v 143 (167)
T PLN02412 83 EIQQTVCTRFKA-EFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFL--VSKEGKV 143 (167)
T ss_pred HHHHHHHHccCC-CCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEE--ECCCCcE
Confidence 55554 577664 4666542 12 12222222 566899999 9999954
No 23
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.73 E-value=4e-17 Score=118.07 Aligned_cols=113 Identities=15% Similarity=0.202 Sum_probs=93.8
Q ss_pred CCcccceeccCCCccceeeeeccCCcEEEEEEEcCC-ChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729 21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHW-CPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL 99 (190)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~w-C~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~ 99 (190)
+...|+|.+.+.++....++.+ .||++||.||++| |++|+..++.|+++++++. ++.+++|+.|. .+..+.|.
T Consensus 3 G~~aP~f~l~~~~g~~~~l~~~-~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~----~~~vi~Is~d~-~~~~~~~~ 76 (143)
T cd03014 3 GDKAPDFTLVTSDLSEVSLADF-AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD----NTVVLTISADL-PFAQKRWC 76 (143)
T ss_pred CCCCCCcEEECCCCcEEeHHHh-CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC----CCEEEEEECCC-HHHHHHHH
Confidence 3457788888887776666666 6899999999998 6999999999999999873 48899999885 66789999
Q ss_pred hCCCCCcccCCchhH-HHHHHHcCCCC------CCeeeeeeecCCCceE
Q psy8729 100 SGMPWPAIPYASETR-QSLASLYNVHG------IPSLILLAVEAGGRLD 141 (190)
Q Consensus 100 ~~~~~~~~~~~~~~~-~~~~~~~~v~~------~P~~~l~~id~~g~~~ 141 (190)
++++...+++..|.. ..+.++||+.. .|++++ ||++|+++
T Consensus 77 ~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~i--id~~G~I~ 123 (143)
T cd03014 77 GAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFV--IDENGKVI 123 (143)
T ss_pred HhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEE--EcCCCeEE
Confidence 988866788888875 89999999863 699999 99999543
No 24
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.73 E-value=4e-17 Score=126.85 Aligned_cols=115 Identities=18% Similarity=0.220 Sum_probs=86.7
Q ss_pred CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCHH
Q psy8729 21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSES 93 (190)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~~ 93 (190)
+...|+|++.+.+|....++.+ +|+++||.||++||++|+.++|.|++++++|.++| +++++|+++ ++.+
T Consensus 76 g~~aPdF~l~d~~G~~vsLsd~-kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d~~~~~e~~s~~ 152 (236)
T PLN02399 76 EKSVHDFTVKDIDGKDVALSKF-KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNP 152 (236)
T ss_pred CCCCCceEEECCCCCEEeHHHh-CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecccccccCCCCHH
Confidence 4567899999888877776666 68999999999999999999999999999998764 999999974 3567
Q ss_pred HHHHHH-hCCCCCcccCCc--hhHH-HHHHH-------cC------CCCCCeeeeeeecCCCceE
Q psy8729 94 SYQSYL-SGMPWPAIPYAS--ETRQ-SLASL-------YN------VHGIPSLILLAVEAGGRLD 141 (190)
Q Consensus 94 ~~~~~~-~~~~~~~~~~~~--~~~~-~~~~~-------~~------v~~~P~~~l~~id~~g~~~ 141 (190)
++++|+ ++++. .+|+.. |.+. ..... ++ +...|+.++ ||++|++.
T Consensus 153 ei~~f~~~~~g~-~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfL--IDk~GkVv 214 (236)
T PLN02399 153 EIKQFACTRFKA-EFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFL--VDKNGKVV 214 (236)
T ss_pred HHHHHHHHhcCC-CCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEE--ECCCCcEE
Confidence 889998 46654 455553 2211 22222 22 345799999 99999553
No 25
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.71 E-value=5.2e-17 Score=114.36 Aligned_cols=103 Identities=17% Similarity=0.386 Sum_probs=83.4
Q ss_pred cceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC-CHHHHHHHHhCCC
Q psy8729 25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-SESSYQSYLSGMP 103 (190)
Q Consensus 25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~-~~~~~~~~~~~~~ 103 (190)
|.|.+.+.++........ ++++++|+||++||++|+..+|.|++++++ +.+++|+.+. +.+.++.|+++++
T Consensus 1 p~f~l~~~~g~~~~~~~~-~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~ 72 (123)
T cd03011 1 PLFTATTLDGEQFDLESL-SGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKG 72 (123)
T ss_pred CCceeecCCCCEeeHHHh-CCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcC
Confidence 345666666544444443 679999999999999999999999988776 3467787775 4788999999888
Q ss_pred CCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729 104 WPAIPYASETRQSLASLYNVHGIPSLILLAVEAGG 138 (190)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g 138 (190)
. .+++..|.+..+++.|++.++|++++ +|++|
T Consensus 73 ~-~~~~~~d~~~~~~~~~~i~~~P~~~v--id~~g 104 (123)
T cd03011 73 Y-GFPVINDPDGVISARWGVSVTPAIVI--VDPGG 104 (123)
T ss_pred C-CccEEECCCcHHHHhCCCCcccEEEE--EcCCC
Confidence 4 57777777789999999999999999 99988
No 26
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.71 E-value=8.3e-17 Score=116.00 Aligned_cols=115 Identities=22% Similarity=0.372 Sum_probs=90.0
Q ss_pred ccceeccCCCccceeeeeccCCcEEEEEEEcCCChh-hhhhhHHHHHHHHHHhhcC-CcEEEEEeeCCC---CHHHHHHH
Q psy8729 24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPP-CKAFTPQLIETYRKLKEDG-YQFEIIFVSSDR---SESSYQSY 98 (190)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~g-~~~~ii~i~~d~---~~~~~~~~ 98 (190)
.|+|++.+.++....+..+ .+++++|.||++||++ |...++.|+++++++.+.+ .++++++|+.|. +.+.+++|
T Consensus 2 ~p~f~l~~~~g~~~~l~~~-~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~ 80 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSDL-KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAY 80 (142)
T ss_pred CCceEEEcCCCCEEchHHh-CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHH
Confidence 4678888777766666665 7899999999999997 9999999999999998753 369999999874 46789999
Q ss_pred HhCCCCCcccCCchh---HHHHHHHcCCCCC--------------CeeeeeeecCCCceEE
Q psy8729 99 LSGMPWPAIPYASET---RQSLASLYNVHGI--------------PSLILLAVEAGGRLDV 142 (190)
Q Consensus 99 ~~~~~~~~~~~~~~~---~~~~~~~~~v~~~--------------P~~~l~~id~~g~~~i 142 (190)
+++++ ..+++..+. ...+.+.||+... |.+++ ||++|++..
T Consensus 81 ~~~~~-~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l--id~~G~i~~ 138 (142)
T cd02968 81 AKAFG-PGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYL--VDPDGKLVR 138 (142)
T ss_pred HHHhC-CCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEE--ECCCCCEEE
Confidence 99886 244444433 4788999997543 46899 999995543
No 27
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.70 E-value=1.6e-16 Score=116.38 Aligned_cols=116 Identities=16% Similarity=0.263 Sum_probs=94.8
Q ss_pred CCcccceeccCCCccceeeeeccCCcEEEEEEEcC-CChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729 21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAH-WCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL 99 (190)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~ 99 (190)
+...|+|.+.+.++....++.+ +++++||.||++ ||+.|...++.|+++++++.+. ++++++|+.| +.+.+++|.
T Consensus 7 g~~~p~f~l~~~~G~~~~l~~~-~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~--~v~vi~Is~d-~~~~~~~~~ 82 (154)
T PRK09437 7 GDIAPKFSLPDQDGEQVSLTDF-QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA--GVVVLGISTD-KPEKLSRFA 82 (154)
T ss_pred CCcCCCcEeeCCCCCEEeHHHh-CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCC-CHHHHHHHH
Confidence 4567888888887776666666 788999999976 6888999999999999999876 4899999988 568899999
Q ss_pred hCCCCCcccCCchhHHHHHHHcCCCCC------------CeeeeeeecCCCceEEE
Q psy8729 100 SGMPWPAIPYASETRQSLASLYNVHGI------------PSLILLAVEAGGRLDVI 143 (190)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~v~~~------------P~~~l~~id~~g~~~i~ 143 (190)
++++. .+++..|....+.+.||+... |+.++ ||++|+++..
T Consensus 83 ~~~~~-~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~l--id~~G~i~~~ 135 (154)
T PRK09437 83 EKELL-NFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFL--IDADGKIEHV 135 (154)
T ss_pred HHhCC-CCeEEECCCchHHHHhCCCcccccccccccCcceEEEE--ECCCCEEEEE
Confidence 98875 577777878889999998654 67789 9999955333
No 28
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.70 E-value=1.6e-16 Score=115.24 Aligned_cols=111 Identities=15% Similarity=0.322 Sum_probs=88.1
Q ss_pred ccceeccCCCccceeeeeccCCc-EEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCC
Q psy8729 24 TYNIGLAEGTVTTKVLSYIESCQ-VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGM 102 (190)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~~~~~k-~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~ 102 (190)
.|++++.+.+++...++.+..++ ++|+.||++||++|+..++.|+++++++.+. ++.+++|+.|.. +..+.|.+++
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~--~v~vv~V~~~~~-~~~~~~~~~~ 78 (149)
T cd02970 2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL--GVELVAVGPESP-EKLEAFDKGK 78 (149)
T ss_pred CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc--CeEEEEEeCCCH-HHHHHHHHhc
Confidence 46777877777666555543444 4555557999999999999999999999876 499999998854 4456788877
Q ss_pred CCCcccCCchhHHHHHHHcCCC-----------------------------CCCeeeeeeecCCCce
Q psy8729 103 PWPAIPYASETRQSLASLYNVH-----------------------------GIPSLILLAVEAGGRL 140 (190)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~v~-----------------------------~~P~~~l~~id~~g~~ 140 (190)
++ .+|+..|.+..+.++||+. .+|..++ ||++|++
T Consensus 79 ~~-~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fv--id~~g~i 142 (149)
T cd02970 79 FL-PFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFV--IGPDGTI 142 (149)
T ss_pred CC-CCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEE--ECCCCeE
Confidence 65 6888899999999999984 7999999 9999944
No 29
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.69 E-value=3.9e-16 Score=112.18 Aligned_cols=113 Identities=17% Similarity=0.201 Sum_probs=93.8
Q ss_pred ccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCC
Q psy8729 24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGM 102 (190)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~ 102 (190)
.|+|.+.+.+++...++.+ .+++++|.|| ++||+.|...++.|+++++++... ++.+++|+.| +.+.+++|.+++
T Consensus 2 ~p~f~l~~~~g~~~~l~~~-~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~~~~i~is~d-~~~~~~~~~~~~ 77 (140)
T cd02971 2 APDFTLPATDGGEVSLSDF-KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG--GAEVLGVSVD-SPFSHKAWAEKE 77 (140)
T ss_pred CCCceeccCCCcEEehHHh-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCC-CHHHHHHHHhcc
Confidence 4677888877777777766 7899999999 789999999999999999999655 5899999987 567789999988
Q ss_pred CCCcccCCchhHHHHHHHcCCCCCC---------eeeeeeecCCCceEE
Q psy8729 103 PWPAIPYASETRQSLASLYNVHGIP---------SLILLAVEAGGRLDV 142 (190)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~v~~~P---------~~~l~~id~~g~~~i 142 (190)
+-..+++..|....+.+.||+...| ++++ ||++|++..
T Consensus 78 ~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~l--id~~g~i~~ 124 (140)
T cd02971 78 GGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFI--IDPDGKIRY 124 (140)
T ss_pred cCCCceEEECCChHHHHHcCCccccccccCceeEEEEE--ECCCCcEEE
Confidence 4346777888888999999988766 7899 999995433
No 30
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.69 E-value=4.4e-16 Score=113.14 Aligned_cols=114 Identities=18% Similarity=0.249 Sum_probs=91.1
Q ss_pred CCcccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729 21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL 99 (190)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~ 99 (190)
+...|.+.+.+.++....++.+...++++|.|| ++||+.|...+|.|+++++++.+. ++++++|+.| ..+.+++|+
T Consensus 4 G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d-~~~~~~~~~ 80 (149)
T cd03018 4 GDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAA--GAEVLGISVD-SPFSLRAWA 80 (149)
T ss_pred CCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC--CCEEEEecCC-CHHHHHHHH
Confidence 345677888887777666666633388888888 999999999999999999999875 4899999987 466789999
Q ss_pred hCCCCCcccCCchhH--HHHHHHcCCCC----C--CeeeeeeecCCCce
Q psy8729 100 SGMPWPAIPYASETR--QSLASLYNVHG----I--PSLILLAVEAGGRL 140 (190)
Q Consensus 100 ~~~~~~~~~~~~~~~--~~~~~~~~v~~----~--P~~~l~~id~~g~~ 140 (190)
++++. .+++..|.. ..+.+.||+.. + |++++ ||++|++
T Consensus 81 ~~~~~-~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~l--id~~G~v 126 (149)
T cd03018 81 EENGL-TFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFV--IDRDGII 126 (149)
T ss_pred HhcCC-CceEecCCCchhHHHHHhCCccccCCCccceEEE--ECCCCEE
Confidence 98875 567777765 88999999873 3 38899 9999944
No 31
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.68 E-value=2.2e-16 Score=115.65 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=84.7
Q ss_pred ccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCHHHHH
Q psy8729 24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSESSYQ 96 (190)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~~~~~ 96 (190)
..+|++.+.+|+...++.+ +||++||.||++|||+|+..+|.|++++++|.++ ++.+++|+++ ++.+.++
T Consensus 2 ~~~f~l~~~~G~~~~l~~~-~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~--~~~v~~i~~~~~~~~~~d~~~~~~ 78 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKY-RGKVSLVVNVASECGFTDQNYRALQELHRELGPS--HFNVLAFPCNQFGESEPDSSKEIE 78 (153)
T ss_pred cccceeECCCCCEecHHHh-CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC--CeEEEEEeccccccCCCCCHHHHH
Confidence 3567788888777777776 7899999999999999999999999999999876 4999999852 4567899
Q ss_pred HHHhC-CCCCcccCCch-----hHHHHHHHcC---CCCCCe----eeeeeecCCCceEEEc
Q psy8729 97 SYLSG-MPWPAIPYASE-----TRQSLASLYN---VHGIPS----LILLAVEAGGRLDVIT 144 (190)
Q Consensus 97 ~~~~~-~~~~~~~~~~~-----~~~~~~~~~~---v~~~P~----~~l~~id~~g~~~i~~ 144 (190)
+|+++ ++. .+|+..+ ........|. ..++|+ .|+ ||++|++....
T Consensus 79 ~f~~~~~~~-~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tfl--ID~~G~v~~~~ 136 (153)
T TIGR02540 79 SFARRNYGV-TFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYL--VNPEGQVVKFW 136 (153)
T ss_pred HHHHHhcCC-CCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEE--EcCCCcEEEEE
Confidence 99975 664 4566533 1111111222 246898 899 99999554443
No 32
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.68 E-value=7.4e-16 Score=116.12 Aligned_cols=114 Identities=17% Similarity=0.236 Sum_probs=83.2
Q ss_pred CcccceeccCCCccceeeeeccCCcEE-EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC-------CHH
Q psy8729 22 KKTYNIGLAEGTVTTKVLSYIESCQVI-GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-------SES 93 (190)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~~~~~k~v-lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~-------~~~ 93 (190)
...|+|++.+.++....++.+ +|+++ ++.+||+|||+|+.++|.|++++++|.++ ++.+++|+++. +.+
T Consensus 18 ~~~p~f~l~d~~G~~vsLs~~-~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~--gv~vv~vs~~~~~~~~~~~~~ 94 (183)
T PTZ00256 18 KSFFEFEAIDIDGQLVQLSKF-KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ--GLEILAFPCNQFMEQEPWDEP 94 (183)
T ss_pred CcccceEeEcCCCCEEeHHHh-CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC--CcEEEEEecccccccCCCCHH
Confidence 457889988888877777776 67754 56679999999999999999999999876 49999998642 347
Q ss_pred HHHHHHh-CCCCCcccCCch--hH----HHHH------------HHcCCCCCCe---eeeeeecCCCceE
Q psy8729 94 SYQSYLS-GMPWPAIPYASE--TR----QSLA------------SLYNVHGIPS---LILLAVEAGGRLD 141 (190)
Q Consensus 94 ~~~~~~~-~~~~~~~~~~~~--~~----~~~~------------~~~~v~~~P~---~~l~~id~~g~~~ 141 (190)
+++.|+. ++++ .+|+..+ .+ ..+. ..+++.++|+ .|+ ||++|++.
T Consensus 95 ~~~~f~~~~~~~-~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tfl--ID~~G~Iv 161 (183)
T PTZ00256 95 EIKEYVQKKFNV-DFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFL--IDGQGKVV 161 (183)
T ss_pred HHHHHHHHhcCC-CCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEE--ECCCCCEE
Confidence 7888875 6664 4565533 11 1222 1235778995 589 99999553
No 33
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.68 E-value=3.5e-16 Score=116.85 Aligned_cols=117 Identities=17% Similarity=0.218 Sum_probs=89.2
Q ss_pred CcccceeccCCCc----cceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHH
Q psy8729 22 KKTYNIGLAEGTV----TTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQ 96 (190)
Q Consensus 22 ~~~~~~~l~~~~~----~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~ 96 (190)
..+|+|.+.+..+ ....++.+ +|+++||+|| ++||++|...++.|++++++|.+. ++.+++|+.|.. +..+
T Consensus 3 ~~aP~f~~~~~~g~~~~~~~~l~~~-~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~--~v~vv~Is~d~~-~~~~ 78 (173)
T cd03015 3 KKAPDFKATAVVPNGEFKEISLSDY-KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL--NAEVLGVSTDSH-FSHL 78 (173)
T ss_pred CcCCCCEeecccCCCCceEEehHHh-CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEecCCH-HHHH
Confidence 4567777766544 34555555 6899999999 899999999999999999999876 489999998753 3344
Q ss_pred HHHhCCC------CCcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEEEc
Q psy8729 97 SYLSGMP------WPAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDVIT 144 (190)
Q Consensus 97 ~~~~~~~------~~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~~ 144 (190)
.|.+..+ -..+++..|....+.+.||+. .+|++++ ||++|+++...
T Consensus 79 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~l--ID~~G~I~~~~ 136 (173)
T cd03015 79 AWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFI--IDPEGIIRHIT 136 (173)
T ss_pred HHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEE--ECCCCeEEEEE
Confidence 5554421 135778888889999999986 6789999 99999554333
No 34
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.66 E-value=6.7e-16 Score=142.28 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=89.1
Q ss_pred CcccceeccC--CCccceee-eeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeC---CC--CHH
Q psy8729 22 KKTYNIGLAE--GTVTTKVL-SYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS---DR--SES 93 (190)
Q Consensus 22 ~~~~~~~l~~--~~~~~~~~-~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~---d~--~~~ 93 (190)
...|+|...+ .++....+ +.+ +++++||+|||+||++|+.++|.|++++++|+++ ++.+++|+. |. +.+
T Consensus 395 ~~~p~f~~~~~~~~g~~~~l~~~l-kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~--~~~vvgV~~~~~D~~~~~~ 471 (1057)
T PLN02919 395 TKVPEFPPKLDWLNTAPLQFRRDL-KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ--PFTVVGVHSAKFDNEKDLE 471 (1057)
T ss_pred CcCCCCcccccccCCccccchhhc-CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC--CeEEEEEecccccccccHH
Confidence 3556666543 33433333 344 7999999999999999999999999999999865 499999974 32 457
Q ss_pred HHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729 94 SYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL 140 (190)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~ 140 (190)
.+++++.++++ .+|...|....+.++|++.++|++++ ||++|++
T Consensus 472 ~~~~~~~~~~i-~~pvv~D~~~~~~~~~~V~~iPt~il--id~~G~i 515 (1057)
T PLN02919 472 AIRNAVLRYNI-SHPVVNDGDMYLWRELGVSSWPTFAV--VSPNGKL 515 (1057)
T ss_pred HHHHHHHHhCC-CccEEECCchHHHHhcCCCccceEEE--ECCCCeE
Confidence 88999998875 45666777888999999999999999 9999954
No 35
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.66 E-value=4.9e-16 Score=117.49 Aligned_cols=117 Identities=13% Similarity=0.146 Sum_probs=88.5
Q ss_pred CCcccceeccC-CCcc--ceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHH
Q psy8729 21 AKKTYNIGLAE-GTVT--TKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQ 96 (190)
Q Consensus 21 ~~~~~~~~l~~-~~~~--~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~ 96 (190)
+...|+|++.+ .++. ...++.+ .|+++||+|| ++||+.|+.+++.|+++++++.+. ++++++|+.|. .+..+
T Consensus 5 G~~aP~f~l~~~~~g~~~~~sl~d~-~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~--gv~vi~VS~D~-~~~~~ 80 (187)
T TIGR03137 5 NTEIKPFKATAYHNGEFVEVTDEDV-KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL--GVEVYSVSTDT-HFVHK 80 (187)
T ss_pred CCcCCCcEeeeccCCceeEecHHHH-CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc--CCcEEEEeCCC-HHHHH
Confidence 34578888776 3443 2333444 6899999999 999999999999999999999876 48899999885 34455
Q ss_pred HHHhCC---CCCcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEEE
Q psy8729 97 SYLSGM---PWPAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDVI 143 (190)
Q Consensus 97 ~~~~~~---~~~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~ 143 (190)
.|.+.. .-..+|+..|.+..+++.||+. ..|++|+ ||++|+++..
T Consensus 81 ~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfi--ID~~G~I~~~ 134 (187)
T TIGR03137 81 AWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFV--IDPEGVIQAV 134 (187)
T ss_pred HHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEE--ECCCCEEEEE
Confidence 555432 1235678888889999999986 4699999 9999955433
No 36
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.66 E-value=5.5e-16 Score=116.01 Aligned_cols=102 Identities=8% Similarity=0.063 Sum_probs=75.3
Q ss_pred ceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEE------EEeeCCCCHHHHHHHHh----CC--C
Q psy8729 36 TKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEI------IFVSSDRSESSYQSYLS----GM--P 103 (190)
Q Consensus 36 ~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~i------i~i~~d~~~~~~~~~~~----~~--~ 103 (190)
...++.+ .||+.+|.|||+||++|+.+.|.|.++.++ ++.+ ++|+.|+.......|++ +. +
T Consensus 51 ~~~~~~l-~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~------~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~ 123 (184)
T TIGR01626 51 PWGSAEL-AGKVRVVHHIAGRTSAKEXNASLIDAIKAA------KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKE 123 (184)
T ss_pred eccHHHc-CCCEEEEEEEecCCChhhccchHHHHHHHc------CCCcccccceEEEECccchhhHHHHHHHHHHHhccc
Confidence 3334444 699999999999999999999999988432 2556 88998876555555544 33 3
Q ss_pred CCcccCCchhHHHHHHHcCCCCCCee-eeeeecCCCceEEEccc
Q psy8729 104 WPAIPYASETRQSLASLYNVHGIPSL-ILLAVEAGGRLDVITTE 146 (190)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~v~~~P~~-~l~~id~~g~~~i~~~~ 146 (190)
++..++..|.+..+...||+.++|++ |+ ||++|+++....+
T Consensus 124 ~P~~~vllD~~g~v~~~~gv~~~P~T~fV--IDk~GkVv~~~~G 165 (184)
T TIGR01626 124 NPWSQVVLDDKGAVKNAWQLNSEDSAIIV--LDKTGKVKFVKEG 165 (184)
T ss_pred CCcceEEECCcchHHHhcCCCCCCceEEE--ECCCCcEEEEEeC
Confidence 33334667777888999999999988 89 9999965444433
No 37
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.65 E-value=9.9e-16 Score=104.94 Aligned_cols=70 Identities=16% Similarity=0.329 Sum_probs=59.0
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
++++++|+|||+||++|+.+.|.|+++++++ . ++.++.|+.|.+.+ ...++++|+|
T Consensus 14 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~---~v~~~~vd~d~~~~--------------------~~~l~~~~~V 69 (103)
T cd02985 14 KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N---DVVFLLVNGDENDS--------------------TMELCRREKI 69 (103)
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C---CCEEEEEECCCChH--------------------HHHHHHHcCC
Confidence 5899999999999999999999999999988 2 37788888875432 3578899999
Q ss_pred CCCCeeeeeeecCCCce
Q psy8729 124 HGIPSLILLAVEAGGRL 140 (190)
Q Consensus 124 ~~~P~~~l~~id~~g~~ 140 (190)
.++||+++ + ++|++
T Consensus 70 ~~~Pt~~~--~-~~G~~ 83 (103)
T cd02985 70 IEVPHFLF--Y-KDGEK 83 (103)
T ss_pred CcCCEEEE--E-eCCeE
Confidence 99999888 7 78843
No 38
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.64 E-value=1.4e-15 Score=105.23 Aligned_cols=66 Identities=17% Similarity=0.339 Sum_probs=58.1
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
.++++||+|||+||++|+.+.|.|.++++++++. +.++.|++|. .+.+.++|+|
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~-----------------------~~~la~~~~V 66 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDE-----------------------VPDFNKMYEL 66 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCC-----------------------CHHHHHHcCC
Confidence 5779999999999999999999999999998653 6788888875 4688999999
Q ss_pred CCCCeeeeeeecCCC
Q psy8729 124 HGIPSLILLAVEAGG 138 (190)
Q Consensus 124 ~~~P~~~l~~id~~g 138 (190)
.++||+++ + ++|
T Consensus 67 ~~iPTf~~--f-k~G 78 (114)
T cd02954 67 YDPPTVMF--F-FRN 78 (114)
T ss_pred CCCCEEEE--E-ECC
Confidence 99999999 7 467
No 39
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.63 E-value=1.5e-15 Score=109.98 Aligned_cols=72 Identities=19% Similarity=0.490 Sum_probs=61.4
Q ss_pred cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729 43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN 122 (190)
Q Consensus 43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (190)
.++++++|+||++||++|+.+.|.+.++++++.+. +.++.|++|.+. ...+.+.|+
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~---------------------~~~~~~~~~ 73 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPK---------------------WLPEIDRYR 73 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCcc---------------------cHHHHHHcC
Confidence 47899999999999999999999999999998643 778888887532 246788999
Q ss_pred CCCCCeeeeeeecCCCce
Q psy8729 123 VHGIPSLILLAVEAGGRL 140 (190)
Q Consensus 123 v~~~P~~~l~~id~~g~~ 140 (190)
|.++|++++ ++++|++
T Consensus 74 V~~iPt~v~--~~~~G~~ 89 (142)
T cd02950 74 VDGIPHFVF--LDREGNE 89 (142)
T ss_pred CCCCCEEEE--ECCCCCE
Confidence 999999999 9989943
No 40
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.63 E-value=2.3e-15 Score=112.15 Aligned_cols=94 Identities=19% Similarity=0.296 Sum_probs=70.9
Q ss_pred CcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhC
Q psy8729 22 KKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSG 101 (190)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~ 101 (190)
..++.|.+.++ ....++.+ + +|.||++|||+|++++|.|+++++++. +.+++|++|...+
T Consensus 53 ~~~~~f~l~dG--~~v~lsd~---~--lV~FwaswCp~C~~e~P~L~~l~~~~g-----~~Vi~Vs~D~~~~-------- 112 (181)
T PRK13728 53 PAPRWFRLSNG--RQVNLADW---K--VVLFMQGHCPYCHQFDPVLKQLAQQYG-----FSVFPYTLDGQGD-------- 112 (181)
T ss_pred CCCCccCCCCC--CEeehhHc---e--EEEEECCCCHhHHHHHHHHHHHHHHcC-----CEEEEEEeCCCCC--------
Confidence 35677777644 34444443 2 778999999999999999999999972 7899999885431
Q ss_pred CCCCcccCCch-hHHHHHHHcCC--CCCCeeeeeeecCCCce
Q psy8729 102 MPWPAIPYASE-TRQSLASLYNV--HGIPSLILLAVEAGGRL 140 (190)
Q Consensus 102 ~~~~~~~~~~~-~~~~~~~~~~v--~~~P~~~l~~id~~g~~ 140 (190)
..+|...+ ....+.+.||+ .++|++|+ ||++|++
T Consensus 113 ---~~fPv~~dd~~~~~~~~~g~~~~~iPttfL--Id~~G~i 149 (181)
T PRK13728 113 ---TAFPEALPAPPDVMQTFFPNIPVATPTTFL--VNVNTLE 149 (181)
T ss_pred ---CCCceEecCchhHHHHHhCCCCCCCCeEEE--EeCCCcE
Confidence 35666664 45567788995 69999999 9999954
No 41
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=7.7e-15 Score=106.54 Aligned_cols=119 Identities=18% Similarity=0.258 Sum_probs=103.3
Q ss_pred CCCCcccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHH
Q psy8729 19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQS 97 (190)
Q Consensus 19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~ 97 (190)
..+..+|+|+|++.++....++++ .|+++||+|| ..++|.|..++-.+++.+.++.+. +..+++||.| +.+..++
T Consensus 5 ~~G~~aPdF~Lp~~~g~~v~Lsd~-~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~--~a~V~GIS~D-s~~~~~~ 80 (157)
T COG1225 5 KVGDKAPDFELPDQDGETVSLSDL-RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL--GAVVLGISPD-SPKSHKK 80 (157)
T ss_pred CCCCcCCCeEeecCCCCEEehHHh-cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC--CCEEEEEeCC-CHHHHHH
Confidence 456678999999999888777777 7889999999 899999999999999999999886 5999999998 7888999
Q ss_pred HHhCCCCCcccCCchhHHHHHHHcCCC------------CCCeeeeeeecCCCceEEEc
Q psy8729 98 YLSGMPWPAIPYASETRQSLASLYNVH------------GIPSLILLAVEAGGRLDVIT 144 (190)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~v~------------~~P~~~l~~id~~g~~~i~~ 144 (190)
|.++++.. ++++.|.+..++++||+. ..+++|+ ||++|+++.+.
T Consensus 81 F~~k~~L~-f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~Tfv--Id~dG~I~~~~ 136 (157)
T COG1225 81 FAEKHGLT-FPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFV--IDPDGKIRYVW 136 (157)
T ss_pred HHHHhCCC-ceeeECCcHHHHHHhCcccccccCccccccccceEEE--ECCCCeEEEEe
Confidence 99999975 999999999999999973 3578999 99999654444
No 42
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.62 E-value=2.2e-15 Score=115.21 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=88.3
Q ss_pred CCcccceeccCCCccceeeeeccCCcEEEE-EEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHH--H-HH
Q psy8729 21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGL-YFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSES--S-YQ 96 (190)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv-~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~--~-~~ 96 (190)
+...|+|++.+..+. ..++.+ +|++++| .||++|||.|..+++.|+++++++.++ ++++++||+|.... + .+
T Consensus 5 G~~aP~F~~~~~~g~-v~l~d~-~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~--~~~vi~vS~D~~~~~~~w~~ 80 (202)
T PRK13190 5 GQKAPDFTVNTTKGP-IDLSKY-KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL--GVELVGLSVDSIYSHIAWLR 80 (202)
T ss_pred CCCCCCcEEecCCCc-EeHHHh-CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHH
Confidence 445677877766553 344444 6777665 689999999999999999999999876 48999999985422 2 23
Q ss_pred HHHhCCCC-CcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEE
Q psy8729 97 SYLSGMPW-PAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDV 142 (190)
Q Consensus 97 ~~~~~~~~-~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i 142 (190)
.+.++.+. ..+|+..|.+..+.+.||+. ++|++++ ||++|+++.
T Consensus 81 ~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fi--Id~~G~I~~ 131 (202)
T PRK13190 81 DIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFI--IDPNQIVRW 131 (202)
T ss_pred hHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEE--ECCCCEEEE
Confidence 44445553 46899999999999999984 5899999 999995543
No 43
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.62 E-value=2.7e-15 Score=115.61 Aligned_cols=118 Identities=12% Similarity=0.183 Sum_probs=92.6
Q ss_pred CCcccceeccCCCccceeeeeccCCcEE-EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCC--HHHHHH
Q psy8729 21 AKKTYNIGLAEGTVTTKVLSYIESCQVI-GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRS--ESSYQS 97 (190)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~v-lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~--~~~~~~ 97 (190)
+...|+|.+.+..|....++.+ .|+++ |+.||++|||.|..+++.|++++++|.++| +++++||+|.. ...|.+
T Consensus 5 Gd~aPdF~l~t~~G~~~~~~~~-~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~~ 81 (215)
T PRK13599 5 GEKFPSMEVVTTQGVKRLPEDY-AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWVE 81 (215)
T ss_pred CCCCCCCEeECCCCcEecHHHH-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHH
Confidence 4567888888777766555665 57765 678999999999999999999999998874 89999999853 334666
Q ss_pred HHhCC-C-CCcccCCchhHHHHHHHcCCC-------CCCeeeeeeecCCCceEEE
Q psy8729 98 YLSGM-P-WPAIPYASETRQSLASLYNVH-------GIPSLILLAVEAGGRLDVI 143 (190)
Q Consensus 98 ~~~~~-~-~~~~~~~~~~~~~~~~~~~v~-------~~P~~~l~~id~~g~~~i~ 143 (190)
++++. + -..+|+..|.+..+++.||+. .+|++|+ ||++|+++..
T Consensus 82 ~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfI--ID~dG~Ir~~ 134 (215)
T PRK13599 82 WIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFI--VDDKGTIRLI 134 (215)
T ss_pred hHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEE--ECCCCEEEEE
Confidence 66643 2 246888899889999999983 5899999 9999965443
No 44
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.61 E-value=4e-15 Score=103.44 Aligned_cols=85 Identities=13% Similarity=0.126 Sum_probs=66.2
Q ss_pred cceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCC
Q psy8729 25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPW 104 (190)
Q Consensus 25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~ 104 (190)
..+.|++.+++..+.- ..++++++|.|||+||++|+.+.|.+.++++++++. +.+..|++|.+
T Consensus 10 ~v~~l~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~------------- 72 (113)
T cd03006 10 PVLDFYKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWP------------- 72 (113)
T ss_pred CeEEechhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCC-------------
Confidence 4566777776654211 137889999999999999999999999999998653 77888887743
Q ss_pred CcccCCchhHHHHH-HHcCCCCCCeeeeeeecCCCc
Q psy8729 105 PAIPYASETRQSLA-SLYNVHGIPSLILLAVEAGGR 139 (190)
Q Consensus 105 ~~~~~~~~~~~~~~-~~~~v~~~P~~~l~~id~~g~ 139 (190)
..++ ++|+|.++||+.+ + ++|+
T Consensus 73 ----------~~l~~~~~~I~~~PTl~l--f-~~g~ 95 (113)
T cd03006 73 ----------QGKCRKQKHFFYFPVIHL--Y-YRSR 95 (113)
T ss_pred ----------hHHHHHhcCCcccCEEEE--E-ECCc
Confidence 4567 5899999999999 7 5664
No 45
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.61 E-value=6e-15 Score=111.31 Aligned_cols=115 Identities=14% Similarity=0.203 Sum_probs=88.5
Q ss_pred cccceecc---CCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHH
Q psy8729 23 KTYNIGLA---EGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY 98 (190)
Q Consensus 23 ~~~~~~l~---~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~ 98 (190)
..|+|... ++.+....++++ .||++||.|| ++||+.|..+++.|+++++++.+. ++++++||.| +....+.|
T Consensus 7 ~~p~f~~~~~~~g~~~~v~L~d~-~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~--g~~vigIS~D-~~~~~~a~ 82 (187)
T PRK10382 7 KIKPFKNQAFKNGEFIEVTEKDT-EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL--GVDVYSVSTD-THFTHKAW 82 (187)
T ss_pred cCCCcEEEEEeCCcceEEEHHHh-CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC--CCEEEEEeCC-CHHHHHHH
Confidence 34444433 345444444555 6889999999 999999999999999999999876 4899999987 55667777
Q ss_pred HhCC---CCCcccCCchhHHHHHHHcCC----CCC--CeeeeeeecCCCceEEE
Q psy8729 99 LSGM---PWPAIPYASETRQSLASLYNV----HGI--PSLILLAVEAGGRLDVI 143 (190)
Q Consensus 99 ~~~~---~~~~~~~~~~~~~~~~~~~~v----~~~--P~~~l~~id~~g~~~i~ 143 (190)
.+.. .-..+|+..|.+..+++.||+ .++ |++++ ||++|+++..
T Consensus 83 ~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfI--ID~~G~I~~~ 134 (187)
T PRK10382 83 HSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFV--VDPQGIIQAI 134 (187)
T ss_pred HHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEE--ECCCCEEEEE
Confidence 7643 124678889999999999998 356 99999 9999955433
No 46
>PRK15000 peroxidase; Provisional
Probab=99.61 E-value=9.3e-15 Score=111.53 Aligned_cols=118 Identities=11% Similarity=0.156 Sum_probs=87.9
Q ss_pred CCcccceeccCC--Cccceeeeec---cCCcEEEEEEEc-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHH
Q psy8729 21 AKKTYNIGLAEG--TVTTKVLSYI---ESCQVIGLYFSA-HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESS 94 (190)
Q Consensus 21 ~~~~~~~~l~~~--~~~~~~~~~~---~~~k~vlv~F~a-~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~ 94 (190)
+...|+|++.+. ++.......+ .++++++|.||+ .||+.|..+++.|++++++|.++ ++++++||.|.. +.
T Consensus 5 g~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~--g~~vigvS~D~~-~~ 81 (200)
T PRK15000 5 TRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR--GVEVVGVSFDSE-FV 81 (200)
T ss_pred CCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCH-HH
Confidence 345677777753 2332112222 268999999998 59999999999999999999886 499999999843 33
Q ss_pred HHHH----HhCCCC--CcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEEE
Q psy8729 95 YQSY----LSGMPW--PAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDVI 143 (190)
Q Consensus 95 ~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~ 143 (190)
.+.| .++.+. ..+|+..|.+..+++.||+. ++|..++ ||++|+++..
T Consensus 82 ~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfi--ID~~G~I~~~ 140 (200)
T PRK15000 82 HNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFL--IDANGIVRHQ 140 (200)
T ss_pred HHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEE--ECCCCEEEEE
Confidence 3333 333443 47888899999999999997 7999999 9999955443
No 47
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.60 E-value=5e-15 Score=114.15 Aligned_cols=119 Identities=14% Similarity=0.193 Sum_probs=91.5
Q ss_pred CCcccceeccCCCccceeeeeccCCcEEEE-EEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHH--HHHH
Q psy8729 21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGL-YFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSES--SYQS 97 (190)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv-~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~--~~~~ 97 (190)
+...|+|.+.+..+.....+.+ +|++++| .||++||+.|..+++.|++++++|.++| +++++||+|.... .|.+
T Consensus 10 G~~aPdF~l~~~~G~~~l~~~~-~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~Ds~~~h~aw~~ 86 (215)
T PRK13191 10 GEKFPEMEVITTHGKIKLPDDY-KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVDSNISHIEWVM 86 (215)
T ss_pred CCcCCCCEeecCCCCEEcHHHh-CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHh
Confidence 4567888888776654444544 5776655 7889999999999999999999998874 8999999986433 4555
Q ss_pred HHhCC-C-CCcccCCchhHHHHHHHcCCC-------CCCeeeeeeecCCCceEEEc
Q psy8729 98 YLSGM-P-WPAIPYASETRQSLASLYNVH-------GIPSLILLAVEAGGRLDVIT 144 (190)
Q Consensus 98 ~~~~~-~-~~~~~~~~~~~~~~~~~~~v~-------~~P~~~l~~id~~g~~~i~~ 144 (190)
++++. + -..+|+..|.+..++++||+. ..|..++ ||++|+++.+.
T Consensus 87 ~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfI--ID~~G~Ir~~~ 140 (215)
T PRK13191 87 WIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFI--VDDKGTVRLIL 140 (215)
T ss_pred hHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEE--ECCCCEEEEEE
Confidence 55532 2 246889999999999999973 4799999 99999665543
No 48
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.59 E-value=4e-15 Score=108.71 Aligned_cols=78 Identities=18% Similarity=0.323 Sum_probs=57.0
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHH-HHHHc-
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQS-LASLY- 121 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 121 (190)
.++..+|+||++||++|+.++|.|+++++++. +.+++|+.|.... ..+|...+.+.. ..+.|
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-----~~Vi~Vs~d~~~~-----------~~fp~~~~~~~~~~~~~~~ 112 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-----LPVYAFSLDGQGL-----------TGFPDPLPATPEVMQTFFP 112 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC-----CcEEEEEeCCCcc-----------cccccccCCchHHHHHHhc
Confidence 45566999999999999999999999998872 6788898875431 122322222222 33455
Q ss_pred --CCCCCCeeeeeeecCCCc
Q psy8729 122 --NVHGIPSLILLAVEAGGR 139 (190)
Q Consensus 122 --~v~~~P~~~l~~id~~g~ 139 (190)
++.++|++++ ||++|+
T Consensus 113 ~~~v~~iPTt~L--ID~~G~ 130 (153)
T TIGR02738 113 NPRPVVTPATFL--VNVNTR 130 (153)
T ss_pred cCCCCCCCeEEE--EeCCCC
Confidence 8899999999 999984
No 49
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.58 E-value=7.9e-15 Score=99.91 Aligned_cols=78 Identities=22% Similarity=0.327 Sum_probs=63.3
Q ss_pred eccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcc
Q psy8729 28 GLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAI 107 (190)
Q Consensus 28 ~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~ 107 (190)
.++..+++..+. ++++++|.||++||++|+.+.|.+.++++++++ .+.+..|+++.
T Consensus 5 ~l~~~~f~~~v~----~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~---~~~~~~vd~~~----------------- 60 (101)
T cd03003 5 TLDRGDFDAAVN----SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG---VIRIGAVNCGD----------------- 60 (101)
T ss_pred EcCHhhHHHHhc----CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC---ceEEEEEeCCc-----------------
Confidence 344455554442 568999999999999999999999999999864 37888888875
Q ss_pred cCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729 108 PYASETRQSLASLYNVHGIPSLILLAVEAGG 138 (190)
Q Consensus 108 ~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g 138 (190)
...++++|++.++||+++ + ++|
T Consensus 61 ------~~~~~~~~~v~~~Pt~~~--~-~~g 82 (101)
T cd03003 61 ------DRMLCRSQGVNSYPSLYV--F-PSG 82 (101)
T ss_pred ------cHHHHHHcCCCccCEEEE--E-cCC
Confidence 357899999999999999 7 567
No 50
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.57 E-value=2e-14 Score=113.27 Aligned_cols=119 Identities=14% Similarity=0.107 Sum_probs=88.4
Q ss_pred CCcccceeccC---CCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHH
Q psy8729 21 AKKTYNIGLAE---GTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQ 96 (190)
Q Consensus 21 ~~~~~~~~l~~---~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~ 96 (190)
+...|+|++.+ +.+....++.+.+++++|+.|| ++||+.|..+++.|+++++++.+.| +++++||.|. ....+
T Consensus 71 Gd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds-~~~h~ 147 (261)
T PTZ00137 71 GKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDS-PFSHK 147 (261)
T ss_pred CCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCC-HHHHH
Confidence 45678888765 3322334444435777777777 9999999999999999999998874 8999999986 44444
Q ss_pred HHHh----CC--CCCcccCCchhHHHHHHHcCCC-----CCCeeeeeeecCCCceEEEc
Q psy8729 97 SYLS----GM--PWPAIPYASETRQSLASLYNVH-----GIPSLILLAVEAGGRLDVIT 144 (190)
Q Consensus 97 ~~~~----~~--~~~~~~~~~~~~~~~~~~~~v~-----~~P~~~l~~id~~g~~~i~~ 144 (190)
.|.+ +. .-..+|+..|.+..+++.||+. ..|+.++ ||++|+++...
T Consensus 148 aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFI--ID~dG~I~~~~ 204 (261)
T PTZ00137 148 AWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVL--VDKAGVVKHVA 204 (261)
T ss_pred HHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEE--ECCCCEEEEEE
Confidence 4443 22 1245888899899999999985 5899999 99999554433
No 51
>PRK13189 peroxiredoxin; Provisional
Probab=99.57 E-value=2.1e-14 Score=111.30 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=87.8
Q ss_pred CCcccceeccCCCccceeeeeccCCcEE-EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729 21 AKKTYNIGLAEGTVTTKVLSYIESCQVI-GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL 99 (190)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~v-lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~ 99 (190)
+...|+|++.+..+...+.+.+ +|+++ |+.||++||+.|..+++.|++++++|.++ ++++++||+|... ..+.|.
T Consensus 12 G~~aPdF~~~~~~g~~~l~d~~-~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~--~v~VigvS~D~~~-~h~aw~ 87 (222)
T PRK13189 12 GDKFPEFEVKTTHGPIKLPDDY-KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL--NTELIGLSIDQVF-SHIKWV 87 (222)
T ss_pred CCcCCCcEeEcCCCCEeeHHHh-CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCHH-HHHHHH
Confidence 4567788887766654444444 57755 55778999999999999999999999876 4899999998543 333443
Q ss_pred h----CCCC-CcccCCchhHHHHHHHcCCC-------CCCeeeeeeecCCCceEEE
Q psy8729 100 S----GMPW-PAIPYASETRQSLASLYNVH-------GIPSLILLAVEAGGRLDVI 143 (190)
Q Consensus 100 ~----~~~~-~~~~~~~~~~~~~~~~~~v~-------~~P~~~l~~id~~g~~~i~ 143 (190)
+ ..+. ..+|+..|.+..+++.||+. ++|++|+ ||++|+++.+
T Consensus 88 ~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfI--ID~~G~Ir~~ 141 (222)
T PRK13189 88 EWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFI--IDPKGIIRAI 141 (222)
T ss_pred HhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEE--ECCCCeEEEE
Confidence 3 2232 46888899999999999975 5799999 9999966444
No 52
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.57 E-value=2.3e-14 Score=109.65 Aligned_cols=116 Identities=12% Similarity=0.175 Sum_probs=84.8
Q ss_pred CcccceeccCCCccceeeeeccCCcEE-EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHh
Q psy8729 22 KKTYNIGLAEGTVTTKVLSYIESCQVI-GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS 100 (190)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~~~~~k~v-lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~ 100 (190)
...|+|++.+..+. ..++.+..++++ |+.||++|||.|..+++.|+++++++.++| +++++|++|. .+..+.|.+
T Consensus 3 ~~aP~F~~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~-~~~~~~~~~ 78 (203)
T cd03016 3 DTAPNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDS-VESHIKWIE 78 (203)
T ss_pred CCCCCeEEecCCCc-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCC-HHHHHHHHh
Confidence 45678888766654 334444333554 557899999999999999999999998874 8999999985 333333433
Q ss_pred C------CCCCcccCCchhHHHHHHHcCCC----C----CCeeeeeeecCCCceEEEc
Q psy8729 101 G------MPWPAIPYASETRQSLASLYNVH----G----IPSLILLAVEAGGRLDVIT 144 (190)
Q Consensus 101 ~------~~~~~~~~~~~~~~~~~~~~~v~----~----~P~~~l~~id~~g~~~i~~ 144 (190)
. .+ ..+|+..|.+..+++.||+. + .|+.|+ ||++|+++...
T Consensus 79 ~i~~~~~~~-~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fi--ID~~G~I~~~~ 133 (203)
T cd03016 79 DIEEYTGVE-IPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFI--IDPDKKIRLIL 133 (203)
T ss_pred hHHHhcCCC-CceeEEECchHHHHHHcCCccccCCCCceeeEEEE--ECCCCeEEEEE
Confidence 2 23 46788899999999999985 2 356899 99999665443
No 53
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.56 E-value=1.8e-14 Score=98.57 Aligned_cols=80 Identities=26% Similarity=0.436 Sum_probs=62.7
Q ss_pred ccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCccc
Q psy8729 29 LAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP 108 (190)
Q Consensus 29 l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~ 108 (190)
++..+++..+.+ ++++++|.||++||++|+.+.|.+.++++++.+ .+.+..|+++.
T Consensus 6 l~~~~f~~~i~~---~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~------------------ 61 (104)
T cd03004 6 LTPEDFPELVLN---RKEPWLVDFYAPWCGPCQALLPELRKAARALKG---KVKVGSVDCQK------------------ 61 (104)
T ss_pred cCHHHHHHHHhc---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CcEEEEEECCc------------------
Confidence 444444444332 567999999999999999999999999999854 37777887764
Q ss_pred CCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729 109 YASETRQSLASLYNVHGIPSLILLAVEAGGR 139 (190)
Q Consensus 109 ~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~ 139 (190)
...+++.|+|.++|++++ +.++|+
T Consensus 62 -----~~~~~~~~~i~~~Pt~~~--~~~g~~ 85 (104)
T cd03004 62 -----YESLCQQANIRAYPTIRL--YPGNAS 85 (104)
T ss_pred -----hHHHHHHcCCCcccEEEE--EcCCCC
Confidence 457899999999999999 876643
No 54
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.56 E-value=1.7e-14 Score=97.20 Aligned_cols=66 Identities=24% Similarity=0.400 Sum_probs=57.3
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
.+++++|+||++||++|+.+.|.++++++.+.+ .+.++.|+++. ...++++|++
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~-----------------------~~~l~~~~~i 64 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG---QFVLAKVNCDA-----------------------QPQIAQQFGV 64 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC---cEEEEEEeccC-----------------------CHHHHHHcCC
Confidence 478999999999999999999999999998864 37777777764 3578999999
Q ss_pred CCCCeeeeeeecCCC
Q psy8729 124 HGIPSLILLAVEAGG 138 (190)
Q Consensus 124 ~~~P~~~l~~id~~g 138 (190)
.++|++++ ++ +|
T Consensus 65 ~~~Pt~~~--~~-~g 76 (96)
T cd02956 65 QALPTVYL--FA-AG 76 (96)
T ss_pred CCCCEEEE--Ee-CC
Confidence 99999999 86 77
No 55
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.56 E-value=1.3e-14 Score=98.90 Aligned_cols=66 Identities=23% Similarity=0.477 Sum_probs=55.0
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
+|++++|.|||+||++|+.+.|.+.++++++++ +.++.|+.+. . ...++++|++
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~-~---------------------~~~l~~~~~V 70 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESS-I---------------------KPSLLSRYGV 70 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCC-C---------------------CHHHHHhcCC
Confidence 799999999999999999999999999998853 5566665441 1 3578899999
Q ss_pred CCCCeeeeeeecCC
Q psy8729 124 HGIPSLILLAVEAG 137 (190)
Q Consensus 124 ~~~P~~~l~~id~~ 137 (190)
.++||+++ ++++
T Consensus 71 ~~~PT~~l--f~~g 82 (100)
T cd02999 71 VGFPTILL--FNST 82 (100)
T ss_pred eecCEEEE--EcCC
Confidence 99999999 8643
No 56
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.56 E-value=1.4e-14 Score=99.77 Aligned_cols=82 Identities=22% Similarity=0.426 Sum_probs=65.2
Q ss_pred eccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcc
Q psy8729 28 GLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAI 107 (190)
Q Consensus 28 ~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~ 107 (190)
.+++.++...+. ..+++++|.||++||++|+.+.|.+.++++++.+ .+.++.++++.+.
T Consensus 4 ~l~~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~---~~~~~~v~~~~~~--------------- 62 (109)
T cd03002 4 ELTPKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG---LVQVAAVDCDEDK--------------- 62 (109)
T ss_pred EcchhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC---CceEEEEecCccc---------------
Confidence 445555544443 2578899999999999999999999999999864 3778888887532
Q ss_pred cCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729 108 PYASETRQSLASLYNVHGIPSLILLAVEAGG 138 (190)
Q Consensus 108 ~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g 138 (190)
...+++.|++.++|++++ +++++
T Consensus 63 ------~~~~~~~~~i~~~Pt~~~--~~~~~ 85 (109)
T cd03002 63 ------NKPLCGKYGVQGFPTLKV--FRPPK 85 (109)
T ss_pred ------cHHHHHHcCCCcCCEEEE--EeCCC
Confidence 367899999999999999 87665
No 57
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.54 E-value=2.2e-14 Score=99.53 Aligned_cols=67 Identities=19% Similarity=0.369 Sum_probs=58.0
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
.+++++|+||++||++|+.+.|.+.++++++.+. ++.+..|+++. ...++++|+|
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~d~-----------------------~~~l~~~~~V 77 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL--GVGIATVNAGH-----------------------ERRLARKLGA 77 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc--CceEEEEeccc-----------------------cHHHHHHcCC
Confidence 6899999999999999999999999999999753 47777777764 3577899999
Q ss_pred CCCCeeeeeeecCCC
Q psy8729 124 HGIPSLILLAVEAGG 138 (190)
Q Consensus 124 ~~~P~~~l~~id~~g 138 (190)
.++|++++ +. +|
T Consensus 78 ~~~Pt~~i--~~-~g 89 (111)
T cd02963 78 HSVPAIVG--II-NG 89 (111)
T ss_pred ccCCEEEE--EE-CC
Confidence 99999999 84 77
No 58
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.2e-14 Score=114.21 Aligned_cols=83 Identities=25% Similarity=0.446 Sum_probs=69.4
Q ss_pred ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCC
Q psy8729 26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105 (190)
Q Consensus 26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~ 105 (190)
.+.++..++...+.... ..++|+|+||+|||++|+.+.|.|.++...|+++ +.+..|++|.
T Consensus 25 I~dvT~anfe~~V~~~S-~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~--------------- 85 (304)
T COG3118 25 IKDVTEANFEQEVIQSS-REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDA--------------- 85 (304)
T ss_pred ceechHhHHHHHHHHHc-cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCc---------------
Confidence 44456666766666553 5669999999999999999999999999999876 8888888886
Q ss_pred cccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729 106 AIPYASETRQSLASLYNVHGIPSLILLAVEAGG 138 (190)
Q Consensus 106 ~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g 138 (190)
.+.+..+|||.++|+.|. + ++|
T Consensus 86 --------~p~vAaqfgiqsIPtV~a--f-~dG 107 (304)
T COG3118 86 --------EPMVAAQFGVQSIPTVYA--F-KDG 107 (304)
T ss_pred --------chhHHHHhCcCcCCeEEE--e-eCC
Confidence 368899999999999999 6 567
No 59
>KOG0910|consensus
Probab=99.54 E-value=1.8e-14 Score=103.00 Aligned_cols=67 Identities=28% Similarity=0.591 Sum_probs=60.0
Q ss_pred cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729 43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN 122 (190)
Q Consensus 43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (190)
+++++|+|+|||+||.||+-+.|.|+++..+|.++ +++..|+.|. ..+++..|+
T Consensus 59 ~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~-----------------------~~ela~~Y~ 112 (150)
T KOG0910|consen 59 NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDE-----------------------HPELAEDYE 112 (150)
T ss_pred ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEcccc-----------------------ccchHhhcc
Confidence 47889999999999999999999999999999765 9999998886 357899999
Q ss_pred CCCCCeeeeeeecCCC
Q psy8729 123 VHGIPSLILLAVEAGG 138 (190)
Q Consensus 123 v~~~P~~~l~~id~~g 138 (190)
|.++||+++ +. +|
T Consensus 113 I~avPtvlv--fk-nG 125 (150)
T KOG0910|consen 113 ISAVPTVLV--FK-NG 125 (150)
T ss_pred eeeeeEEEE--EE-CC
Confidence 999999999 84 66
No 60
>PHA02278 thioredoxin-like protein
Probab=99.54 E-value=3.5e-14 Score=97.11 Aligned_cols=71 Identities=14% Similarity=0.243 Sum_probs=56.8
Q ss_pred cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729 43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN 122 (190)
Q Consensus 43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (190)
.++++++|+|||+||++|+.+.|.+.++++++.. +..++.|++|.+.. + ...+.++|+
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~---~~~~~~vdvd~~~~------------------d-~~~l~~~~~ 69 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI---KKPILTLNLDAEDV------------------D-REKAVKLFD 69 (103)
T ss_pred hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC---CceEEEEECCcccc------------------c-cHHHHHHCC
Confidence 3688999999999999999999999999877533 25677888775320 0 246889999
Q ss_pred CCCCCeeeeeeecCCC
Q psy8729 123 VHGIPSLILLAVEAGG 138 (190)
Q Consensus 123 v~~~P~~~l~~id~~g 138 (190)
|.++||+++ + ++|
T Consensus 70 I~~iPT~i~--f-k~G 82 (103)
T PHA02278 70 IMSTPVLIG--Y-KDG 82 (103)
T ss_pred CccccEEEE--E-ECC
Confidence 999999999 7 467
No 61
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.53 E-value=5.3e-14 Score=96.16 Aligned_cols=67 Identities=18% Similarity=0.364 Sum_probs=56.4
Q ss_pred cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729 43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN 122 (190)
Q Consensus 43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (190)
.++++++|+|||+||++|+.+.|.+.++++++++. .+.++.++.| + .++.++|+
T Consensus 15 ~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~--~~~~~~vd~d-~-----------------------~~~~~~~~ 68 (102)
T cd02948 15 SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD--LLHFATAEAD-T-----------------------IDTLKRYR 68 (102)
T ss_pred ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC--cEEEEEEeCC-C-----------------------HHHHHHcC
Confidence 36889999999999999999999999999988643 3677778777 2 35689999
Q ss_pred CCCCCeeeeeeecCCC
Q psy8729 123 VHGIPSLILLAVEAGG 138 (190)
Q Consensus 123 v~~~P~~~l~~id~~g 138 (190)
+.++|++++ + ++|
T Consensus 69 v~~~Pt~~~--~-~~g 81 (102)
T cd02948 69 GKCEPTFLF--Y-KNG 81 (102)
T ss_pred CCcCcEEEE--E-ECC
Confidence 999999988 7 477
No 62
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.52 E-value=1.6e-13 Score=104.79 Aligned_cols=117 Identities=19% Similarity=0.256 Sum_probs=88.4
Q ss_pred CCcccceecc----CCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHH
Q psy8729 21 AKKTYNIGLA----EGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSY 95 (190)
Q Consensus 21 ~~~~~~~~l~----~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~ 95 (190)
+...|+|.+. ++++....++++ .|++++|+|| +.||+.|..+++.|+++++++.++ ++++++||.|.... .
T Consensus 9 G~~aPdF~~~~~~~~~~~~~v~l~d~-~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~--g~~vv~IS~d~~~~-~ 84 (199)
T PTZ00253 9 NHPAPSFEEVALMPNGSFKKISLSSY-KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL--NCEVLACSMDSEYA-H 84 (199)
T ss_pred CCcCCCCEeeccccCCCCcEEeHHHH-CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEeCCCHHH-H
Confidence 4456777743 455555555665 6889999999 588999999999999999999987 49999999985433 3
Q ss_pred HHHHh----C--CCCCcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEEE
Q psy8729 96 QSYLS----G--MPWPAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDVI 143 (190)
Q Consensus 96 ~~~~~----~--~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~ 143 (190)
..+.. . .+-..+|+..|.+..+++.||+. .+|+.++ ||++|+++..
T Consensus 85 ~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fi--ID~~G~i~~~ 142 (199)
T PTZ00253 85 LQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFI--IDPKGMLRQI 142 (199)
T ss_pred HHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEE--ECCCCEEEEE
Confidence 33322 1 12257899999999999999985 4689999 9999955443
No 63
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.52 E-value=9e-14 Score=95.70 Aligned_cols=67 Identities=22% Similarity=0.281 Sum_probs=58.4
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
+++++||.|+++||++|+.+.|.|.++++++++. +.++.|++|. .+.+.++|++
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDe-----------------------v~dva~~y~I 66 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDK-----------------------VPVYTQYFDI 66 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEeccc-----------------------cHHHHHhcCc
Confidence 6899999999999999999999999999999643 7788888875 4689999999
Q ss_pred CCCCeeeeeeecCCC
Q psy8729 124 HGIPSLILLAVEAGG 138 (190)
Q Consensus 124 ~~~P~~~l~~id~~g 138 (190)
.+.|++++ +.++.
T Consensus 67 ~amPtfvf--fkngk 79 (114)
T cd02986 67 SYIPSTIF--FFNGQ 79 (114)
T ss_pred eeCcEEEE--EECCc
Confidence 99999999 85444
No 64
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.51 E-value=1.4e-13 Score=94.31 Aligned_cols=69 Identities=28% Similarity=0.471 Sum_probs=57.5
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
++++++|.||++||++|+.+.|.++++++.++..+..+.+..++++. ...+++.|++
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~I 70 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA-----------------------YSSIASEFGV 70 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc-----------------------CHhHHhhcCC
Confidence 56789999999999999999999999999997654457777777653 2467889999
Q ss_pred CCCCeeeeeeecCCC
Q psy8729 124 HGIPSLILLAVEAGG 138 (190)
Q Consensus 124 ~~~P~~~l~~id~~g 138 (190)
.++|++++ ++ +|
T Consensus 71 ~~~Pt~~l--~~-~~ 82 (104)
T cd03000 71 RGYPTIKL--LK-GD 82 (104)
T ss_pred ccccEEEE--Ec-CC
Confidence 99999999 84 44
No 65
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.51 E-value=1.3e-13 Score=94.40 Aligned_cols=73 Identities=19% Similarity=0.380 Sum_probs=58.9
Q ss_pred cCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHH
Q psy8729 43 ESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLAS 119 (190)
Q Consensus 43 ~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (190)
.++++++|+||++||++|+.+.+.+ .++.+.+.+ ++.++.|+++.+.. ....+.+
T Consensus 9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~-------------------~~~~~~~ 66 (104)
T cd02953 9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKNDP-------------------EITALLK 66 (104)
T ss_pred HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCCCH-------------------HHHHHHH
Confidence 4789999999999999999999887 567777754 48888887764321 1467889
Q ss_pred HcCCCCCCeeeeeeecC-CCc
Q psy8729 120 LYNVHGIPSLILLAVEA-GGR 139 (190)
Q Consensus 120 ~~~v~~~P~~~l~~id~-~g~ 139 (190)
+|++.++|++++ +++ +|+
T Consensus 67 ~~~i~~~Pti~~--~~~~~g~ 85 (104)
T cd02953 67 RFGVFGPPTYLF--YGPGGEP 85 (104)
T ss_pred HcCCCCCCEEEE--ECCCCCC
Confidence 999999999999 987 774
No 66
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.50 E-value=1.3e-13 Score=95.05 Aligned_cols=82 Identities=24% Similarity=0.419 Sum_probs=63.1
Q ss_pred eccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcC---CcEEEEEeeCCCCHHHHHHHHhCCCC
Q psy8729 28 GLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDG---YQFEIIFVSSDRSESSYQSYLSGMPW 104 (190)
Q Consensus 28 ~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g---~~~~ii~i~~d~~~~~~~~~~~~~~~ 104 (190)
.+++.+++..+ ..+++++|.||++||++|+.+.|.++++++.+++.. ..+.+..|++|.
T Consensus 5 ~l~~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~-------------- 66 (108)
T cd02996 5 SLTSGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK-------------- 66 (108)
T ss_pred EcCHhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC--------------
Confidence 34444554432 367899999999999999999999999998876431 147777777765
Q ss_pred CcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729 105 PAIPYASETRQSLASLYNVHGIPSLILLAVEAGGR 139 (190)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~ 139 (190)
...++++|++.++|++++ + ++|+
T Consensus 67 ---------~~~l~~~~~v~~~Ptl~~--~-~~g~ 89 (108)
T cd02996 67 ---------ESDIADRYRINKYPTLKL--F-RNGM 89 (108)
T ss_pred ---------CHHHHHhCCCCcCCEEEE--E-eCCc
Confidence 357899999999999999 7 5773
No 67
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.50 E-value=1.1e-13 Score=96.57 Aligned_cols=86 Identities=24% Similarity=0.366 Sum_probs=64.1
Q ss_pred eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729 27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA 106 (190)
Q Consensus 27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~ 106 (190)
+.++..++...+.+ .+++++|+||++||++|+.+.|.+.++++++++....+.+..++++.+.
T Consensus 4 ~~l~~~~f~~~i~~---~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-------------- 66 (114)
T cd02992 4 IVLDAASFNSALLG---SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-------------- 66 (114)
T ss_pred EECCHHhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--------------
Confidence 34444455444432 4579999999999999999999999999998754234677667655322
Q ss_pred ccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729 107 IPYASETRQSLASLYNVHGIPSLILLAVEAGG 138 (190)
Q Consensus 107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g 138 (190)
...+++.|++.++|++++ +.+++
T Consensus 67 -------~~~~~~~~~i~~~Pt~~l--f~~~~ 89 (114)
T cd02992 67 -------NVALCRDFGVTGYPTLRY--FPPFS 89 (114)
T ss_pred -------hHHHHHhCCCCCCCEEEE--ECCCC
Confidence 467899999999999999 85443
No 68
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.50 E-value=1e-13 Score=94.20 Aligned_cols=67 Identities=27% Similarity=0.512 Sum_probs=55.9
Q ss_pred EEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCC
Q psy8729 47 VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGI 126 (190)
Q Consensus 47 ~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 126 (190)
.++|.||++||++|+.+.|.++++++++.+....+.+..++++. ...+++.|++.++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~v~~~ 74 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ-----------------------HRELCSEFQVRGY 74 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC-----------------------ChhhHhhcCCCcC
Confidence 48999999999999999999999999997632357888777664 3477889999999
Q ss_pred CeeeeeeecCCCc
Q psy8729 127 PSLILLAVEAGGR 139 (190)
Q Consensus 127 P~~~l~~id~~g~ 139 (190)
|++++ + ++|+
T Consensus 75 Pt~~~--~-~~g~ 84 (102)
T cd03005 75 PTLLL--F-KDGE 84 (102)
T ss_pred CEEEE--E-eCCC
Confidence 99999 8 4663
No 69
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.48 E-value=2.7e-13 Score=95.86 Aligned_cols=83 Identities=18% Similarity=0.408 Sum_probs=61.2
Q ss_pred cCC-cEEEEEEEcCCChhhhhhhHHHH---HHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHH
Q psy8729 43 ESC-QVIGLYFSAHWCPPCKAFTPQLI---ETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLA 118 (190)
Q Consensus 43 ~~~-k~vlv~F~a~wC~~C~~~~~~l~---~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (190)
.++ ++++|+||++||++|+.+.+.+. .+.+.+.+ ++.++.|+++.+.... .| .........+.
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~d~~~~~~-~~---------~~~~~~~~~l~ 77 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINIDGDKEVT-DF---------DGEALSEKELA 77 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEccCCceee-cc---------CCCCccHHHHH
Confidence 467 89999999999999999999884 55566553 3788888887543211 11 11112357889
Q ss_pred HHcCCCCCCeeeeeeecCC-Cce
Q psy8729 119 SLYNVHGIPSLILLAVEAG-GRL 140 (190)
Q Consensus 119 ~~~~v~~~P~~~l~~id~~-g~~ 140 (190)
++|++.++|++++ ++++ |++
T Consensus 78 ~~~~v~~~Pt~~~--~~~~gg~~ 98 (125)
T cd02951 78 RKYRVRFTPTVIF--LDPEGGKE 98 (125)
T ss_pred HHcCCccccEEEE--EcCCCCce
Confidence 9999999999999 9998 743
No 70
>KOG0907|consensus
Probab=99.48 E-value=1.4e-13 Score=94.41 Aligned_cols=66 Identities=27% Similarity=0.610 Sum_probs=58.2
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
+++.++|+|+|+||++|+.+.|.+.+++.+|++ +.++.+++|. ...+++.+++
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde-----------------------~~~~~~~~~V 72 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDE-----------------------LEEVAKEFNV 72 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEeccc-----------------------CHhHHHhcCc
Confidence 579999999999999999999999999999963 7788888875 3688999999
Q ss_pred CCCCeeeeeeecCCCc
Q psy8729 124 HGIPSLILLAVEAGGR 139 (190)
Q Consensus 124 ~~~P~~~l~~id~~g~ 139 (190)
.++||+.+ + ++|+
T Consensus 73 ~~~PTf~f--~-k~g~ 85 (106)
T KOG0907|consen 73 KAMPTFVF--Y-KGGE 85 (106)
T ss_pred eEeeEEEE--E-ECCE
Confidence 99999999 7 5663
No 71
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.48 E-value=3e-13 Score=93.48 Aligned_cols=70 Identities=20% Similarity=0.411 Sum_probs=58.1
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHH-HcC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLAS-LYN 122 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 122 (190)
++++++|.||++||++|+.+.|.+.++++.+++. ++.+..|++|.+. ..++. .|+
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~--~~~~~~vd~d~~~----------------------~~~~~~~~~ 75 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS--NVKVAKFNADGEQ----------------------REFAKEELQ 75 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC--CeEEEEEECCccc----------------------hhhHHhhcC
Confidence 6789999999999999999999999999998743 5888888887522 34555 599
Q ss_pred CCCCCeeeeeeecCCCc
Q psy8729 123 VHGIPSLILLAVEAGGR 139 (190)
Q Consensus 123 v~~~P~~~l~~id~~g~ 139 (190)
+.++||+++ ++++++
T Consensus 76 v~~~Pti~~--f~~~~~ 90 (109)
T cd02993 76 LKSFPTILF--FPKNSR 90 (109)
T ss_pred CCcCCEEEE--EcCCCC
Confidence 999999999 877663
No 72
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.46 E-value=3e-13 Score=91.94 Aligned_cols=78 Identities=19% Similarity=0.362 Sum_probs=59.6
Q ss_pred eccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcc
Q psy8729 28 GLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAI 107 (190)
Q Consensus 28 ~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~ 107 (190)
.++..+++..+ +++ ++|.||++||++|+.+.|.++++++.+... ++.+..++++.
T Consensus 5 ~l~~~~f~~~~-----~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~~~----------------- 59 (101)
T cd02994 5 ELTDSNWTLVL-----EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDL--GINVAKVDVTQ----------------- 59 (101)
T ss_pred EcChhhHHHHh-----CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccC--CeEEEEEEccC-----------------
Confidence 34445554332 344 679999999999999999999999876532 47777777764
Q ss_pred cCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729 108 PYASETRQSLASLYNVHGIPSLILLAVEAGGR 139 (190)
Q Consensus 108 ~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~ 139 (190)
...++++|++.++|++++ + ++|+
T Consensus 60 ------~~~~~~~~~i~~~Pt~~~--~-~~g~ 82 (101)
T cd02994 60 ------EPGLSGRFFVTALPTIYH--A-KDGV 82 (101)
T ss_pred ------CHhHHHHcCCcccCEEEE--e-CCCC
Confidence 346789999999999999 7 6783
No 73
>PRK09381 trxA thioredoxin; Provisional
Probab=99.46 E-value=4e-13 Score=92.64 Aligned_cols=67 Identities=30% Similarity=0.584 Sum_probs=57.5
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
.+++++|+||++||++|+.+.|.++++++++.+ ++.+..++++.. ..+++.|++
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~---~~~~~~vd~~~~-----------------------~~~~~~~~v 73 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQN-----------------------PGTAPKYGI 73 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC---CcEEEEEECCCC-----------------------hhHHHhCCC
Confidence 577899999999999999999999999999864 378888887753 456789999
Q ss_pred CCCCeeeeeeecCCCc
Q psy8729 124 HGIPSLILLAVEAGGR 139 (190)
Q Consensus 124 ~~~P~~~l~~id~~g~ 139 (190)
.++|++++ + ++|+
T Consensus 74 ~~~Pt~~~--~-~~G~ 86 (109)
T PRK09381 74 RGIPTLLL--F-KNGE 86 (109)
T ss_pred CcCCEEEE--E-eCCe
Confidence 99999999 8 5783
No 74
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.45 E-value=4.1e-13 Score=91.43 Aligned_cols=71 Identities=28% Similarity=0.543 Sum_probs=57.2
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
++++++|.||++||++|+.+.|.++++++.+.+. ..+.++.++++.+. ...+++.|++
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~---------------------~~~~~~~~~i 73 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKED-GKGVLAAVDCTKPE---------------------HDALKEEYNV 73 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC-CceEEEEEECCCCc---------------------cHHHHHhCCC
Confidence 5679999999999999999999999999998754 24666666665422 4678899999
Q ss_pred CCCCeeeeeeecCCCc
Q psy8729 124 HGIPSLILLAVEAGGR 139 (190)
Q Consensus 124 ~~~P~~~l~~id~~g~ 139 (190)
.++|++++ + ++|+
T Consensus 74 ~~~Pt~~~--~-~~g~ 86 (104)
T cd02997 74 KGFPTFKY--F-ENGK 86 (104)
T ss_pred ccccEEEE--E-eCCC
Confidence 99999888 6 4663
No 75
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.45 E-value=4.2e-13 Score=92.83 Aligned_cols=93 Identities=24% Similarity=0.455 Sum_probs=63.1
Q ss_pred cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729 43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN 122 (190)
Q Consensus 43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (190)
.++++++++||++||++|+.+.+.+....+-...-..++.++.++++.+......+.+..+. ........++.+.||
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~ 79 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKELAQRYG 79 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHHHHHHTT
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccc---hhhhHHHHHHHHHcC
Confidence 37899999999999999999999987643321111124788888887666555555553332 222233568999999
Q ss_pred CCCCCeeeeeeecCCCce
Q psy8729 123 VHGIPSLILLAVEAGGRL 140 (190)
Q Consensus 123 v~~~P~~~l~~id~~g~~ 140 (190)
+.++|++++ +|++|++
T Consensus 80 v~gtPt~~~--~d~~G~~ 95 (112)
T PF13098_consen 80 VNGTPTIVF--LDKDGKI 95 (112)
T ss_dssp --SSSEEEE--CTTTSCE
T ss_pred CCccCEEEE--EcCCCCE
Confidence 999999999 9999953
No 76
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.44 E-value=5.9e-13 Score=97.13 Aligned_cols=67 Identities=24% Similarity=0.469 Sum_probs=56.7
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
.+++++|+||++||++|+.+.|.++++++++.+. ++.++.|++|.. ..++++|+|
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~--~v~f~~VDvd~~-----------------------~~la~~~~V 100 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN--NLKFGKIDIGRF-----------------------PNVAEKFRV 100 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC--CeEEEEEECCCC-----------------------HHHHHHcCc
Confidence 4678999999999999999999999999998643 588999988863 466778888
Q ss_pred CC------CCeeeeeeecCCC
Q psy8729 124 HG------IPSLILLAVEAGG 138 (190)
Q Consensus 124 ~~------~P~~~l~~id~~g 138 (190)
.+ +||+++ +. +|
T Consensus 101 ~~~~~v~~~PT~il--f~-~G 118 (152)
T cd02962 101 STSPLSKQLPTIIL--FQ-GG 118 (152)
T ss_pred eecCCcCCCCEEEE--EE-CC
Confidence 77 999999 74 67
No 77
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.44 E-value=4.7e-13 Score=90.71 Aligned_cols=69 Identities=28% Similarity=0.511 Sum_probs=58.7
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
++++++|.||++||++|+.+.+.++++++.+.+.+ ++.+..++++. ...++++|++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~-----------------------~~~~~~~~~i 67 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP-DIVLAKVDATA-----------------------EKDLASRFGV 67 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCC-ceEEEEEEccc-----------------------hHHHHHhCCC
Confidence 68899999999999999999999999999987642 47776666653 4678899999
Q ss_pred CCCCeeeeeeecCCC
Q psy8729 124 HGIPSLILLAVEAGG 138 (190)
Q Consensus 124 ~~~P~~~l~~id~~g 138 (190)
.++|++++ +++++
T Consensus 68 ~~~P~~~~--~~~~~ 80 (102)
T TIGR01126 68 SGFPTIKF--FPKGK 80 (102)
T ss_pred CcCCEEEE--ecCCC
Confidence 99999999 88777
No 78
>PRK10996 thioredoxin 2; Provisional
Probab=99.43 E-value=7.7e-13 Score=95.38 Aligned_cols=67 Identities=19% Similarity=0.561 Sum_probs=57.1
Q ss_pred cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729 43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN 122 (190)
Q Consensus 43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (190)
.++++++|+||++||++|+.+.|.+.++++++.+ ++.++.++.+. ...++++|+
T Consensus 50 ~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~~~-----------------------~~~l~~~~~ 103 (139)
T PRK10996 50 QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG---KVRFVKVNTEA-----------------------ERELSARFR 103 (139)
T ss_pred hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CeEEEEEeCCC-----------------------CHHHHHhcC
Confidence 4689999999999999999999999999988764 37777777654 357899999
Q ss_pred CCCCCeeeeeeecCCC
Q psy8729 123 VHGIPSLILLAVEAGG 138 (190)
Q Consensus 123 v~~~P~~~l~~id~~g 138 (190)
|.++|++++ ++ +|
T Consensus 104 V~~~Ptlii--~~-~G 116 (139)
T PRK10996 104 IRSIPTIMI--FK-NG 116 (139)
T ss_pred CCccCEEEE--EE-CC
Confidence 999999999 75 78
No 79
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.43 E-value=8.6e-13 Score=94.74 Aligned_cols=67 Identities=12% Similarity=0.252 Sum_probs=57.0
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
..+++||+|||+||++|+.+.|.|.++++++++. +.++.|++|. .+.+...|+|
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe-----------------------~~dla~~y~I 75 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITE-----------------------VPDFNTMYEL 75 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCC-----------------------CHHHHHHcCc
Confidence 6889999999999999999999999999998654 7778888885 4688999999
Q ss_pred CCCCeee-eeeecCCCc
Q psy8729 124 HGIPSLI-LLAVEAGGR 139 (190)
Q Consensus 124 ~~~P~~~-l~~id~~g~ 139 (190)
.+.|+++ + + ++|.
T Consensus 76 ~~~~t~~~f--f-k~g~ 89 (142)
T PLN00410 76 YDPCTVMFF--F-RNKH 89 (142)
T ss_pred cCCCcEEEE--E-ECCe
Confidence 9777666 5 4 6773
No 80
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.43 E-value=7.1e-13 Score=105.53 Aligned_cols=76 Identities=21% Similarity=0.350 Sum_probs=61.7
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
.++++||+||++||++|+.+.|.|+++++++. +.+++|++|.... ..+|.. +.+..+.+.|||
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~-----------~~fp~~-~~d~~la~~~gV 227 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPL-----------PGFPNA-RPDAGQAQQLKI 227 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCcc-----------ccCCcc-cCCHHHHHHcCC
Confidence 68899999999999999999999999999873 7799999986542 123333 224567899999
Q ss_pred CCCCeeeeeeecCCC
Q psy8729 124 HGIPSLILLAVEAGG 138 (190)
Q Consensus 124 ~~~P~~~l~~id~~g 138 (190)
.++|++++ ++++|
T Consensus 228 ~~vPtl~L--v~~~~ 240 (271)
T TIGR02740 228 RTVPAVFL--ADPDP 240 (271)
T ss_pred CcCCeEEE--EECCC
Confidence 99999999 99843
No 81
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.42 E-value=1e-12 Score=89.06 Aligned_cols=79 Identities=30% Similarity=0.637 Sum_probs=63.4
Q ss_pred ccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCccc
Q psy8729 29 LAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP 108 (190)
Q Consensus 29 l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~ 108 (190)
+++.+++..+.+ ++++++|+||++||++|+.+.|.+.++++++.+ ++.++.|+.+.
T Consensus 4 lt~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~------------------ 59 (103)
T PF00085_consen 4 LTDENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDCDE------------------ 59 (103)
T ss_dssp ESTTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEETTT------------------
T ss_pred CCHHHHHHHHHc---cCCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhhhc------------------
Confidence 455555444442 378999999999999999999999999999875 37777777764
Q ss_pred CCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729 109 YASETRQSLASLYNVHGIPSLILLAVEAGG 138 (190)
Q Consensus 109 ~~~~~~~~~~~~~~v~~~P~~~l~~id~~g 138 (190)
...++++|++.++|++++ +..++
T Consensus 60 -----~~~l~~~~~v~~~Pt~~~--~~~g~ 82 (103)
T PF00085_consen 60 -----NKELCKKYGVKSVPTIIF--FKNGK 82 (103)
T ss_dssp -----SHHHHHHTTCSSSSEEEE--EETTE
T ss_pred -----cchhhhccCCCCCCEEEE--EECCc
Confidence 368899999999999999 85443
No 82
>PTZ00051 thioredoxin; Provisional
Probab=99.41 E-value=1.3e-12 Score=88.30 Aligned_cols=68 Identities=22% Similarity=0.486 Sum_probs=55.8
Q ss_pred cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729 43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN 122 (190)
Q Consensus 43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (190)
..+++++|.||++||++|+.+.|.+.++++++. ++.++.++.+. ...++++|+
T Consensus 16 ~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~vd~~~-----------------------~~~~~~~~~ 68 (98)
T PTZ00051 16 SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT----KMVFVKVDVDE-----------------------LSEVAEKEN 68 (98)
T ss_pred hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC----CcEEEEEECcc-----------------------hHHHHHHCC
Confidence 468899999999999999999999999988753 36677776653 357899999
Q ss_pred CCCCCeeeeeeecCCCce
Q psy8729 123 VHGIPSLILLAVEAGGRL 140 (190)
Q Consensus 123 v~~~P~~~l~~id~~g~~ 140 (190)
+.++|++++ + ++|+.
T Consensus 69 v~~~Pt~~~--~-~~g~~ 83 (98)
T PTZ00051 69 ITSMPTFKV--F-KNGSV 83 (98)
T ss_pred CceeeEEEE--E-eCCeE
Confidence 999999888 6 57743
No 83
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.41 E-value=1.4e-12 Score=88.75 Aligned_cols=70 Identities=26% Similarity=0.477 Sum_probs=57.8
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
.+++++|.||++||++|+.+.|.+.++++.+... .++.+..++.+.. ...++++|++
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~----------------------~~~~~~~~~i 73 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE-DDVVIAKVDADEA----------------------NKDLAKKYGV 73 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-CCEEEEEEECCCc----------------------chhhHHhCCC
Confidence 4668999999999999999999999999998733 3577777776541 2578999999
Q ss_pred CCCCeeeeeeecCCC
Q psy8729 124 HGIPSLILLAVEAGG 138 (190)
Q Consensus 124 ~~~P~~~l~~id~~g 138 (190)
.++|++++ ++++|
T Consensus 74 ~~~P~~~~--~~~~~ 86 (105)
T cd02998 74 SGFPTLKF--FPKGS 86 (105)
T ss_pred CCcCEEEE--EeCCC
Confidence 99999999 87765
No 84
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.40 E-value=2.8e-12 Score=87.24 Aligned_cols=66 Identities=35% Similarity=0.552 Sum_probs=55.9
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
.+++++|.||++||++|+.+.|.+.++++++++. +.+..++++. ...++++|++
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~-----------------------~~~~~~~~~i 70 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADV-----------------------HQSLAQQYGV 70 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcc-----------------------hHHHHHHCCC
Confidence 4667999999999999999999999999988653 7777777664 4578899999
Q ss_pred CCCCeeeeeeecCC
Q psy8729 124 HGIPSLILLAVEAG 137 (190)
Q Consensus 124 ~~~P~~~l~~id~~ 137 (190)
.++|++++ ++++
T Consensus 71 ~~~P~~~~--~~~~ 82 (103)
T cd03001 71 RGFPTIKV--FGAG 82 (103)
T ss_pred CccCEEEE--ECCC
Confidence 99999999 8654
No 85
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.39 E-value=1.7e-12 Score=88.36 Aligned_cols=81 Identities=28% Similarity=0.449 Sum_probs=60.6
Q ss_pred eccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcc
Q psy8729 28 GLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAI 107 (190)
Q Consensus 28 ~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~ 107 (190)
.+++.+++..+. ..++.++|+||++||++|+.+.|.+.++++.+.+. .++.+..++++.
T Consensus 4 ~l~~~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~----------------- 62 (104)
T cd02995 4 VVVGKNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-DNVVIAKMDATA----------------- 62 (104)
T ss_pred EEchhhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-CCEEEEEEeCcc-----------------
Confidence 344444433333 24688999999999999999999999999998763 357777777663
Q ss_pred cCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729 108 PYASETRQSLASLYNVHGIPSLILLAVEAGG 138 (190)
Q Consensus 108 ~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g 138 (190)
..++..+++.++|++++ +.+++
T Consensus 63 -------~~~~~~~~~~~~Pt~~~--~~~~~ 84 (104)
T cd02995 63 -------NDVPSEFVVDGFPTILF--FPAGD 84 (104)
T ss_pred -------hhhhhhccCCCCCEEEE--EcCCC
Confidence 24567789999999999 75444
No 86
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.39 E-value=2.5e-12 Score=86.94 Aligned_cols=66 Identities=18% Similarity=0.419 Sum_probs=56.8
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
.+++++|+||++||+.|+.+.|.+.++.+++.+ ++.++.++.+. ..++.+.+++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~---~v~~~~id~d~-----------------------~~~l~~~~~v 65 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG---AVHFVEIDIDE-----------------------DQEIAEAAGI 65 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC---ceEEEEEECCC-----------------------CHHHHHHCCC
Confidence 688999999999999999999999999988864 37777777764 3577889999
Q ss_pred CCCCeeeeeeecCCC
Q psy8729 124 HGIPSLILLAVEAGG 138 (190)
Q Consensus 124 ~~~P~~~l~~id~~g 138 (190)
.++|++++ ++ +|
T Consensus 66 ~~vPt~~i--~~-~g 77 (97)
T cd02949 66 MGTPTVQF--FK-DK 77 (97)
T ss_pred eeccEEEE--EE-CC
Confidence 99999999 85 67
No 87
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.38 E-value=1.6e-12 Score=89.49 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=57.5
Q ss_pred CCcEEEEEEEcCC--ChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHc
Q psy8729 44 SCQVIGLYFSAHW--CPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLY 121 (190)
Q Consensus 44 ~~k~vlv~F~a~w--C~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (190)
.+.+++|.||++| ||+|+.+.|.|.+++++|++. +.++.++.|+ .+.++.+|
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~-----------------------~~~la~~f 79 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRAD-----------------------EQALAARF 79 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCC-----------------------CHHHHHHc
Confidence 5678899999997 999999999999999999764 7777787775 35889999
Q ss_pred CCCCCCeeeeeeecCCC
Q psy8729 122 NVHGIPSLILLAVEAGG 138 (190)
Q Consensus 122 ~v~~~P~~~l~~id~~g 138 (190)
+|.++||+++ + ++|
T Consensus 80 ~V~sIPTli~--f-kdG 93 (111)
T cd02965 80 GVLRTPALLF--F-RDG 93 (111)
T ss_pred CCCcCCEEEE--E-ECC
Confidence 9999999999 7 577
No 88
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.38 E-value=1.5e-12 Score=91.31 Aligned_cols=85 Identities=15% Similarity=0.094 Sum_probs=65.7
Q ss_pred cceeccCCCccceeeeeccCCcEEEEEEEcCCChh--hh--hhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHh
Q psy8729 25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPP--CK--AFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS 100 (190)
Q Consensus 25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~--C~--~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~ 100 (190)
..+.+++.+|+..+.+ +..++|++||++||++ |+ ...|.+.+++.++-+. .++.+..|++|.
T Consensus 10 ~v~~lt~~nF~~~v~~---~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~-~~v~~~kVD~d~---------- 75 (120)
T cd03065 10 RVIDLNEKNYKQVLKK---YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED-KGIGFGLVDSKK---------- 75 (120)
T ss_pred ceeeCChhhHHHHHHh---CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc-CCCEEEEEeCCC----------
Confidence 3455677777666553 5668999999999976 99 7788888888887433 248888888875
Q ss_pred CCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729 101 GMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGR 139 (190)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~ 139 (190)
+..++++|||.++||+++ + ++|+
T Consensus 76 -------------~~~La~~~~I~~iPTl~l--f-k~G~ 98 (120)
T cd03065 76 -------------DAKVAKKLGLDEEDSIYV--F-KDDE 98 (120)
T ss_pred -------------CHHHHHHcCCccccEEEE--E-ECCE
Confidence 468999999999999999 7 5783
No 89
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.37 E-value=1.2e-12 Score=91.70 Aligned_cols=71 Identities=21% Similarity=0.535 Sum_probs=52.0
Q ss_pred cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729 43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN 122 (190)
Q Consensus 43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (190)
.++++++|+||++||++|+.+.|.+.+........ ..++.+.+|.+. ....+.|+
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~---~~fv~v~vd~~~----------------------~~~~~~~~ 71 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELS---HNFVMVNLEDDE----------------------EPKDEEFS 71 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc---CcEEEEEecCCC----------------------Cchhhhcc
Confidence 47899999999999999999999998876654322 234555655432 12234677
Q ss_pred CCC--CCeeeeeeecCCCce
Q psy8729 123 VHG--IPSLILLAVEAGGRL 140 (190)
Q Consensus 123 v~~--~P~~~l~~id~~g~~ 140 (190)
+.+ +|++++ ++++|++
T Consensus 72 ~~g~~vPt~~f--~~~~Gk~ 89 (117)
T cd02959 72 PDGGYIPRILF--LDPSGDV 89 (117)
T ss_pred cCCCccceEEE--ECCCCCC
Confidence 765 999999 9999943
No 90
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.37 E-value=4.9e-12 Score=95.06 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=66.3
Q ss_pred cccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCHHHH
Q psy8729 23 KTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSESSY 95 (190)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~~~~ 95 (190)
..+++++.+.+|....++.+ .||++||.|||+||+.|+ .++.|++++++|.++| +.+++++++ .+.+++
T Consensus 4 ~~~~f~~~~~~G~~v~Ls~~-~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~g--l~Vlg~p~nqf~~qe~~~~~ei 79 (183)
T PRK10606 4 SILTTVVTTIDGEVTTLEKY-AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQG--FVVLGFPCNQFLGQEPGSDEEI 79 (183)
T ss_pred CccCcEeECCCCCEEeHHHh-CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCC--eEEEEeeccccccCCCCCHHHH
Confidence 35667777777766666666 789999999999999996 6999999999998764 999999885 366889
Q ss_pred HHHHh-CCCCCcccCC
Q psy8729 96 QSYLS-GMPWPAIPYA 110 (190)
Q Consensus 96 ~~~~~-~~~~~~~~~~ 110 (190)
+.|.+ +++. .+|+.
T Consensus 80 ~~f~~~~~g~-~Fpv~ 94 (183)
T PRK10606 80 KTYCRTTWGV-TFPMF 94 (183)
T ss_pred HHHHHHccCC-CceeE
Confidence 99997 6664 35555
No 91
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.36 E-value=5.3e-12 Score=92.67 Aligned_cols=117 Identities=18% Similarity=0.255 Sum_probs=88.3
Q ss_pred CcccceeccCCC---ccceeeeeccCCcEEEEEE-EcCCChhhhhh-hHHHHHHHHHHhhcCCcE-EEEEeeCCCCHHHH
Q psy8729 22 KKTYNIGLAEGT---VTTKVLSYIESCQVIGLYF-SAHWCPPCKAF-TPQLIETYRKLKEDGYQF-EIIFVSSDRSESSY 95 (190)
Q Consensus 22 ~~~~~~~l~~~~---~~~~~~~~~~~~k~vlv~F-~a~wC~~C~~~-~~~l~~l~~~~~~~g~~~-~ii~i~~d~~~~~~ 95 (190)
...|+|.+.+.. +....++.+..+++++|+| .+.|||.|..+ ++.+++.++++.+.| . .+++||.| +.+..
T Consensus 3 ~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D-~~~~~ 79 (155)
T cd03013 3 DKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVN-DPFVM 79 (155)
T ss_pred CcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECC-CHHHH
Confidence 457788887653 5555555522455555554 49999999999 999999999998774 6 59999988 56678
Q ss_pred HHHHhCCCC-CcccCCchhHHHHHHHcCCCC-----------CCeeeeeeecCCCceEEEc
Q psy8729 96 QSYLSGMPW-PAIPYASETRQSLASLYNVHG-----------IPSLILLAVEAGGRLDVIT 144 (190)
Q Consensus 96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~-----------~P~~~l~~id~~g~~~i~~ 144 (190)
++|.++++. ..++++.|.+..+++.||+.. ...+++ || +|+++.+.
T Consensus 80 ~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fi--Id-~g~I~~~~ 137 (155)
T cd03013 80 KAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALI--VD-DGKVKYLF 137 (155)
T ss_pred HHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEE--EC-CCEEEEEE
Confidence 889998887 478999999999999999831 245678 98 69554433
No 92
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.36 E-value=3.5e-12 Score=88.72 Aligned_cols=63 Identities=17% Similarity=0.342 Sum_probs=53.3
Q ss_pred CcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCC
Q psy8729 45 CQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVH 124 (190)
Q Consensus 45 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 124 (190)
+++++|+||++||++|+.+.|.+.+++++++ ++.++.|+.+. . .++++|++.
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~----~v~f~~vd~~~-----------------------~-~l~~~~~i~ 75 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP----ETKFVKINAEK-----------------------A-FLVNYLDIK 75 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC----CcEEEEEEchh-----------------------h-HHHHhcCCC
Confidence 4899999999999999999999999999874 25666666552 3 788999999
Q ss_pred CCCeeeeeeecCCC
Q psy8729 125 GIPSLILLAVEAGG 138 (190)
Q Consensus 125 ~~P~~~l~~id~~g 138 (190)
++|++++ + ++|
T Consensus 76 ~~Pt~~~--f-~~G 86 (113)
T cd02957 76 VLPTLLV--Y-KNG 86 (113)
T ss_pred cCCEEEE--E-ECC
Confidence 9999999 7 467
No 93
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.35 E-value=3.1e-12 Score=89.43 Aligned_cols=74 Identities=19% Similarity=0.413 Sum_probs=59.8
Q ss_pred CCcEEEEEEEc-------CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHH
Q psy8729 44 SCQVIGLYFSA-------HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQS 116 (190)
Q Consensus 44 ~~k~vlv~F~a-------~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (190)
++++++|+||| +||++|+.+.|.+.++.+++++ ++.++.|++|... ...+....
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~---~v~fv~Vdvd~~~----------------~w~d~~~~ 80 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE---DCVFIYCDVGDRP----------------YWRDPNNP 80 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC---CCEEEEEEcCCcc----------------cccCcchh
Confidence 47899999999 9999999999999999998863 3778888887432 22233578
Q ss_pred HHHHcCCC-CCCeeeeeeecCCC
Q psy8729 117 LASLYNVH-GIPSLILLAVEAGG 138 (190)
Q Consensus 117 ~~~~~~v~-~~P~~~l~~id~~g 138 (190)
+.+.|++. ++||+++ ++..+
T Consensus 81 ~~~~~~I~~~iPT~~~--~~~~~ 101 (119)
T cd02952 81 FRTDPKLTTGVPTLLR--WKTPQ 101 (119)
T ss_pred hHhccCcccCCCEEEE--EcCCc
Confidence 89999998 9999999 86555
No 94
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.35 E-value=6.4e-12 Score=84.59 Aligned_cols=65 Identities=15% Similarity=0.432 Sum_probs=54.5
Q ss_pred CcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCC
Q psy8729 45 CQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVH 124 (190)
Q Consensus 45 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 124 (190)
+++++|.||++||++|+.+.|.|.++.+++. .++.++.++.+. ...++++|++.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~---~~i~~~~vd~~~-----------------------~~~~~~~~~i~ 67 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF---PSVLFLSIEAEE-----------------------LPEISEKFEIT 67 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC---CceEEEEEcccc-----------------------CHHHHHhcCCc
Confidence 6899999999999999999999999998873 347777765543 35788999999
Q ss_pred CCCeeeeeeecCCC
Q psy8729 125 GIPSLILLAVEAGG 138 (190)
Q Consensus 125 ~~P~~~l~~id~~g 138 (190)
++|++++ ++ +|
T Consensus 68 ~~Pt~~~--~~-~g 78 (97)
T cd02984 68 AVPTFVF--FR-NG 78 (97)
T ss_pred cccEEEE--EE-CC
Confidence 9999999 85 67
No 95
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.34 E-value=5.2e-12 Score=97.65 Aligned_cols=85 Identities=20% Similarity=0.376 Sum_probs=64.7
Q ss_pred cceeccCCCccceeeeec-cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCC
Q psy8729 25 YNIGLAEGTVTTKVLSYI-ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMP 103 (190)
Q Consensus 25 ~~~~l~~~~~~~~~~~~~-~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~ 103 (190)
..+.+++.+++..+.... ..+++++|+||++||++|+.+.|.++++++++++. +.+..++++.
T Consensus 31 ~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~~------------- 94 (224)
T PTZ00443 31 ALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDATR------------- 94 (224)
T ss_pred CcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCcc-------------
Confidence 446667777765443221 13578999999999999999999999999998643 6666665543
Q ss_pred CCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729 104 WPAIPYASETRQSLASLYNVHGIPSLILLAVEAGG 138 (190)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g 138 (190)
...++++|+|.++||+++ ++ +|
T Consensus 95 ----------~~~l~~~~~I~~~PTl~~--f~-~G 116 (224)
T PTZ00443 95 ----------ALNLAKRFAIKGYPTLLL--FD-KG 116 (224)
T ss_pred ----------cHHHHHHcCCCcCCEEEE--EE-CC
Confidence 357899999999999999 86 67
No 96
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.32 E-value=1.4e-11 Score=83.08 Aligned_cols=66 Identities=29% Similarity=0.597 Sum_probs=56.2
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
.++.++|+||++||++|+.+.+.++++.+++++ ++.++.++.+. +..++++|++
T Consensus 13 ~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~-----------------------~~~~~~~~~v 66 (101)
T TIGR01068 13 SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG---KVKFVKLNVDE-----------------------NPDIAAKYGI 66 (101)
T ss_pred cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC---CeEEEEEECCC-----------------------CHHHHHHcCC
Confidence 456899999999999999999999999988864 38888887764 3467889999
Q ss_pred CCCCeeeeeeecCCC
Q psy8729 124 HGIPSLILLAVEAGG 138 (190)
Q Consensus 124 ~~~P~~~l~~id~~g 138 (190)
.++|++++ + ++|
T Consensus 67 ~~~P~~~~--~-~~g 78 (101)
T TIGR01068 67 RSIPTLLL--F-KNG 78 (101)
T ss_pred CcCCEEEE--E-eCC
Confidence 99999999 8 466
No 97
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.31 E-value=8.5e-12 Score=86.81 Aligned_cols=66 Identities=21% Similarity=0.255 Sum_probs=56.4
Q ss_pred cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729 43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN 122 (190)
Q Consensus 43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (190)
.++++++|+||++||++|+.+.|.|.+++++++ ++.++.|+.+. ...+.++|+
T Consensus 20 ~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~----~i~f~~Vd~~~-----------------------~~~l~~~~~ 72 (113)
T cd02989 20 KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL----ETKFIKVNAEK-----------------------APFLVEKLN 72 (113)
T ss_pred hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC----CCEEEEEEccc-----------------------CHHHHHHCC
Confidence 357889999999999999999999999998874 36788887765 357899999
Q ss_pred CCCCCeeeeeeecCCC
Q psy8729 123 VHGIPSLILLAVEAGG 138 (190)
Q Consensus 123 v~~~P~~~l~~id~~g 138 (190)
+.++|++++ + ++|
T Consensus 73 v~~vPt~l~--f-k~G 85 (113)
T cd02989 73 IKVLPTVIL--F-KNG 85 (113)
T ss_pred CccCCEEEE--E-ECC
Confidence 999999999 7 467
No 98
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.31 E-value=5.4e-12 Score=84.72 Aligned_cols=70 Identities=29% Similarity=0.516 Sum_probs=58.4
Q ss_pred cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729 43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN 122 (190)
Q Consensus 43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (190)
.++++++|.||++||++|+...+.+.++++.++.. ..+.++.++.+. ...+++.|+
T Consensus 13 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~-----------------------~~~~~~~~~ 68 (101)
T cd02961 13 KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGD-GKVVVAKVDCTA-----------------------NNDLCSEYG 68 (101)
T ss_pred hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccC-CceEEEEeeccc-----------------------hHHHHHhCC
Confidence 35668999999999999999999999999988521 247787777664 368899999
Q ss_pred CCCCCeeeeeeecCCC
Q psy8729 123 VHGIPSLILLAVEAGG 138 (190)
Q Consensus 123 v~~~P~~~l~~id~~g 138 (190)
+.++|++++ ++++|
T Consensus 69 i~~~Pt~~~--~~~~~ 82 (101)
T cd02961 69 VRGYPTIKL--FPNGS 82 (101)
T ss_pred CCCCCEEEE--EcCCC
Confidence 999999999 98775
No 99
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.31 E-value=3e-11 Score=85.24 Aligned_cols=83 Identities=16% Similarity=0.139 Sum_probs=57.1
Q ss_pred cCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHH
Q psy8729 43 ESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLAS 119 (190)
Q Consensus 43 ~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (190)
.++|+++|+|+++||++|+.+.+.. .++.+.+.+ ++.++.++.+..++..+.+ ......
T Consensus 13 ~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~---~fv~VkvD~~~~~~~~~~~---------------~~~~~~ 74 (124)
T cd02955 13 REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE---NFVPIKVDREERPDVDKIY---------------MNAAQA 74 (124)
T ss_pred HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC---CEEEEEEeCCcCcHHHHHH---------------HHHHHH
Confidence 4799999999999999999998733 345555543 3666666665443322222 122333
Q ss_pred HcCCCCCCeeeeeeecCCCceEEEcccc
Q psy8729 120 LYNVHGIPSLILLAVEAGGRLDVITTEA 147 (190)
Q Consensus 120 ~~~v~~~P~~~l~~id~~g~~~i~~~~~ 147 (190)
.|++.++|++++ ++++| +.+...+
T Consensus 75 ~~~~~G~Pt~vf--l~~~G--~~~~~~~ 98 (124)
T cd02955 75 MTGQGGWPLNVF--LTPDL--KPFFGGT 98 (124)
T ss_pred hcCCCCCCEEEE--ECCCC--CEEeeee
Confidence 679999999999 99999 6665443
No 100
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.28 E-value=1.8e-11 Score=85.22 Aligned_cols=67 Identities=19% Similarity=0.328 Sum_probs=55.2
Q ss_pred cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729 43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN 122 (190)
Q Consensus 43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (190)
.+.+.++|+||++||++|+.+.|.+.++.+.+ + .+.+..++.|. ...+.++|+
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~---~i~~~~vd~d~-----------------------~~~l~~~~~ 72 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D---KLKLEIYDFDE-----------------------DKEKAEKYG 72 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C---ceEEEEEeCCc-----------------------CHHHHHHcC
Confidence 35667889999999999999999999998775 2 37787787774 357889999
Q ss_pred CCCCCeeeeeeecCCC
Q psy8729 123 VHGIPSLILLAVEAGG 138 (190)
Q Consensus 123 v~~~P~~~l~~id~~g 138 (190)
+.++|++++ ++.++
T Consensus 73 v~~vPt~~i--~~~g~ 86 (113)
T cd02975 73 VERVPTTIF--LQDGG 86 (113)
T ss_pred CCcCCEEEE--EeCCe
Confidence 999999999 86543
No 101
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.28 E-value=1.2e-11 Score=104.67 Aligned_cols=85 Identities=15% Similarity=0.308 Sum_probs=63.0
Q ss_pred eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729 27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA 106 (190)
Q Consensus 27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~ 106 (190)
+.|+..+++..+.. ...++++||+||++||++|+.+.|.+.++++++.+. .+.++.|++|.+.
T Consensus 354 v~L~~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~--~v~~~kVdvD~~~-------------- 416 (463)
T TIGR00424 354 VSLSRPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS--GVKVAKFRADGDQ-------------- 416 (463)
T ss_pred EECCHHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CcEEEEEECCCCc--------------
Confidence 33444444443321 127889999999999999999999999999998764 3778888887533
Q ss_pred ccCCchhHHHHHHHcCCCCCCeeeeeeecCC
Q psy8729 107 IPYASETRQSLASLYNVHGIPSLILLAVEAG 137 (190)
Q Consensus 107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~ 137 (190)
....++.|+|.++||+++ +.++
T Consensus 417 -------~~~~~~~~~I~~~PTii~--Fk~g 438 (463)
T TIGR00424 417 -------KEFAKQELQLGSFPTILF--FPKH 438 (463)
T ss_pred -------cHHHHHHcCCCccceEEE--EECC
Confidence 123346899999999999 7544
No 102
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.27 E-value=2.6e-11 Score=85.48 Aligned_cols=76 Identities=17% Similarity=0.443 Sum_probs=52.8
Q ss_pred ccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCc-hhHHHHHHH
Q psy8729 42 IESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS-ETRQSLASL 120 (190)
Q Consensus 42 ~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 120 (190)
+.+++.++|+|+++|||+|+.+.|.|.++.++. +..+..|++|.+.. ..... ..-.++.+.
T Consensus 20 i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd~~~~-------------~~~~~~~~~~~~~~~ 81 (122)
T TIGR01295 20 LDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSENNGS-------------FEMSSLNDLTAFRSR 81 (122)
T ss_pred HHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECCCccC-------------cCcccHHHHHHHHHH
Confidence 347888999999999999999999999998873 25588888874320 00000 002344555
Q ss_pred c----CCCCCCeeeeeeecCCC
Q psy8729 121 Y----NVHGIPSLILLAVEAGG 138 (190)
Q Consensus 121 ~----~v~~~P~~~l~~id~~g 138 (190)
| ++.++||+++ + ++|
T Consensus 82 ~~i~~~i~~~PT~v~--~-k~G 100 (122)
T TIGR01295 82 FGIPTSFMGTPTFVH--I-TDG 100 (122)
T ss_pred cCCcccCCCCCEEEE--E-eCC
Confidence 5 4567999999 8 567
No 103
>KOG0190|consensus
Probab=99.26 E-value=1.3e-11 Score=104.23 Aligned_cols=94 Identities=27% Similarity=0.442 Sum_probs=73.9
Q ss_pred ccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCC
Q psy8729 24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMP 103 (190)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~ 103 (190)
...+.|+..++..... .+..++|.||||||.||+.+.|++++.++.+.+.|..+.+.-|... .
T Consensus 25 ~~Vl~Lt~dnf~~~i~----~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat--~----------- 87 (493)
T KOG0190|consen 25 EDVLVLTKDNFKETIN----GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT--E----------- 87 (493)
T ss_pred cceEEEecccHHHHhc----cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc--h-----------
Confidence 4556777777766665 6788999999999999999999999999999988766777666544 3
Q ss_pred CCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEEEcccc
Q psy8729 104 WPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEA 147 (190)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~~~ 147 (190)
...++.+|+|.++||+.+ + ++|+....+.++
T Consensus 88 ----------~~~~~~~y~v~gyPTlki--F-rnG~~~~~Y~G~ 118 (493)
T KOG0190|consen 88 ----------ESDLASKYEVRGYPTLKI--F-RNGRSAQDYNGP 118 (493)
T ss_pred ----------hhhhHhhhcCCCCCeEEE--E-ecCCcceeccCc
Confidence 478999999999999999 6 677442334443
No 104
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.26 E-value=6.9e-12 Score=106.50 Aligned_cols=69 Identities=29% Similarity=0.577 Sum_probs=59.4
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
++++++|.|||+||++|+.+.|.+.++++.+.+.+.++.+..|+++. ...+++.|++
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~i 73 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE-----------------------EKDLAQKYGV 73 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC-----------------------cHHHHHhCCC
Confidence 67889999999999999999999999999988765568888887764 3578999999
Q ss_pred CCCCeeeeeeecCCC
Q psy8729 124 HGIPSLILLAVEAGG 138 (190)
Q Consensus 124 ~~~P~~~l~~id~~g 138 (190)
.++|++++ +. +|
T Consensus 74 ~~~Pt~~~--~~-~g 85 (462)
T TIGR01130 74 SGYPTLKI--FR-NG 85 (462)
T ss_pred ccccEEEE--Ee-CC
Confidence 99999999 75 45
No 105
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.26 E-value=7.5e-11 Score=88.16 Aligned_cols=118 Identities=19% Similarity=0.347 Sum_probs=90.2
Q ss_pred CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCCh-hhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC---CHHHHH
Q psy8729 21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCP-PCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR---SESSYQ 96 (190)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~-~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~---~~~~~~ 96 (190)
....+.|+|.+.+|+...++.+ +||+++|.|..+.|| .|...+..|.++.+++.+++.+++++.|++|. +++.++
T Consensus 29 ~~~~~~f~L~d~~G~~~~~~~~-~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~ 107 (174)
T PF02630_consen 29 PRIVPDFTLTDQDGKTVTLDDL-KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLK 107 (174)
T ss_dssp SCSSST-EEEETTSSEEEGGGG-TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHH
T ss_pred CccCCCcEEEcCCCCEecHHHh-CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHH
Confidence 3456779999999887777776 899999999999998 79999999999999999876789999999994 468899
Q ss_pred HHHhCCC--CCcccCCchhHHHHHHHcCCCC----------------CCeeeeeeecCCCceE
Q psy8729 97 SYLSGMP--WPAIPYASETRQSLASLYNVHG----------------IPSLILLAVEAGGRLD 141 (190)
Q Consensus 97 ~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~----------------~P~~~l~~id~~g~~~ 141 (190)
+|.+.++ |..+....+....+.+.|++.. ...+++ +|++|+++
T Consensus 108 ~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~L--idp~G~i~ 168 (174)
T PF02630_consen 108 KYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYL--IDPDGRIR 168 (174)
T ss_dssp HHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEE--E-TTSEEE
T ss_pred HHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEE--EcCCCcEE
Confidence 9999775 4444444455677888887542 135677 99999543
No 106
>PTZ00102 disulphide isomerase; Provisional
Probab=99.25 E-value=2.3e-11 Score=104.00 Aligned_cols=82 Identities=22% Similarity=0.379 Sum_probs=63.7
Q ss_pred ccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCccc
Q psy8729 29 LAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP 108 (190)
Q Consensus 29 l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~ 108 (190)
+.+.+++..+. ..++.++|+|||+||++|+.+.|.++++++.+++. ..+.+..++++.+
T Consensus 362 l~~~~f~~~v~---~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~v~~~~id~~~~----------------- 420 (477)
T PTZ00102 362 VVGNTFEEIVF---KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN-DSIIVAKMNGTAN----------------- 420 (477)
T ss_pred ecccchHHHHh---cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CcEEEEEEECCCC-----------------
Confidence 44455554433 36889999999999999999999999999988764 3577777776642
Q ss_pred CCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729 109 YASETRQSLASLYNVHGIPSLILLAVEAGGR 139 (190)
Q Consensus 109 ~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~ 139 (190)
...++.|++.++|++++ ++++++
T Consensus 421 ------~~~~~~~~v~~~Pt~~~--~~~~~~ 443 (477)
T PTZ00102 421 ------ETPLEEFSWSAFPTILF--VKAGER 443 (477)
T ss_pred ------ccchhcCCCcccCeEEE--EECCCc
Confidence 34577899999999999 887774
No 107
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.23 E-value=4.8e-11 Score=89.25 Aligned_cols=63 Identities=13% Similarity=0.273 Sum_probs=53.8
Q ss_pred CcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCC
Q psy8729 45 CQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVH 124 (190)
Q Consensus 45 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 124 (190)
+.++||+||++||++|+.+.|.|..++++|+ .+.++-|+.+. . .+...|++.
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~----~vkF~kVd~d~-----------------------~-~l~~~f~v~ 134 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP----AVKFCKIRASA-----------------------T-GASDEFDTD 134 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC----CeEEEEEeccc-----------------------h-hhHHhCCCC
Confidence 4589999999999999999999999999884 37777777663 2 678899999
Q ss_pred CCCeeeeeeecCCC
Q psy8729 125 GIPSLILLAVEAGG 138 (190)
Q Consensus 125 ~~P~~~l~~id~~g 138 (190)
++||+++ + ++|
T Consensus 135 ~vPTlll--y-k~G 145 (175)
T cd02987 135 ALPALLV--Y-KGG 145 (175)
T ss_pred CCCEEEE--E-ECC
Confidence 9999999 7 567
No 108
>PTZ00102 disulphide isomerase; Provisional
Probab=99.21 E-value=5.1e-11 Score=101.93 Aligned_cols=84 Identities=23% Similarity=0.444 Sum_probs=65.7
Q ss_pred ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCC
Q psy8729 26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105 (190)
Q Consensus 26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~ 105 (190)
...+++.+++..+ .+++.++|.||++||++|+.+.|.+.++++.+.+.+.++.+..|+++.
T Consensus 34 v~~l~~~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~--------------- 94 (477)
T PTZ00102 34 VTVLTDSTFDKFI----TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE--------------- 94 (477)
T ss_pred cEEcchhhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC---------------
Confidence 3445544444433 367889999999999999999999999998887654567777776654
Q ss_pred cccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729 106 AIPYASETRQSLASLYNVHGIPSLILLAVEAGG 138 (190)
Q Consensus 106 ~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g 138 (190)
...++++|++.++|++++ ++.++
T Consensus 95 --------~~~l~~~~~i~~~Pt~~~--~~~g~ 117 (477)
T PTZ00102 95 --------EMELAQEFGVRGYPTIKF--FNKGN 117 (477)
T ss_pred --------CHHHHHhcCCCcccEEEE--EECCc
Confidence 357899999999999999 87655
No 109
>KOG0908|consensus
Probab=99.19 E-value=2.7e-11 Score=92.95 Aligned_cols=70 Identities=21% Similarity=0.449 Sum_probs=57.0
Q ss_pred CccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCch
Q psy8729 33 TVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASE 112 (190)
Q Consensus 33 ~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~ 112 (190)
+++..++.. .+|.++|+|+|+||.||+...|.+..++.+|++ ..++-|++|.
T Consensus 11 df~~~ls~a--g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd~---------------------- 62 (288)
T KOG0908|consen 11 DFQRELSAA--GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVDE---------------------- 62 (288)
T ss_pred HHHHhhhcc--CceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHHH----------------------
Confidence 344444433 788999999999999999999999999999964 5666666653
Q ss_pred hHHHHHHHcCCCCCCeeee
Q psy8729 113 TRQSLASLYNVHGIPSLIL 131 (190)
Q Consensus 113 ~~~~~~~~~~v~~~P~~~l 131 (190)
....+..+||.++||+++
T Consensus 63 -c~~taa~~gV~amPTFif 80 (288)
T KOG0908|consen 63 -CRGTAATNGVNAMPTFIF 80 (288)
T ss_pred -hhchhhhcCcccCceEEE
Confidence 457788999999999999
No 110
>PLN02309 5'-adenylylsulfate reductase
Probab=99.14 E-value=2.3e-10 Score=96.76 Aligned_cols=70 Identities=19% Similarity=0.361 Sum_probs=57.2
Q ss_pred cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHH-Hc
Q psy8729 43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLAS-LY 121 (190)
Q Consensus 43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 121 (190)
..+++++|+||++||++|+.+.|.+.++++++.+. ++.+..+++|.. ...++. .|
T Consensus 363 ~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~--~V~f~kVD~d~~----------------------~~~la~~~~ 418 (457)
T PLN02309 363 NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS--GVKVAKFRADGD----------------------QKEFAKQEL 418 (457)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CeEEEEEECCCc----------------------chHHHHhhC
Confidence 37889999999999999999999999999998754 488888887722 235565 69
Q ss_pred CCCCCCeeeeeeecCCC
Q psy8729 122 NVHGIPSLILLAVEAGG 138 (190)
Q Consensus 122 ~v~~~P~~~l~~id~~g 138 (190)
+|.++||+++ +.++.
T Consensus 419 ~I~~~PTil~--f~~g~ 433 (457)
T PLN02309 419 QLGSFPTILL--FPKNS 433 (457)
T ss_pred CCceeeEEEE--EeCCC
Confidence 9999999999 75443
No 111
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.14 E-value=2e-10 Score=75.53 Aligned_cols=65 Identities=32% Similarity=0.600 Sum_probs=54.6
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
.+++++|.||++||++|+...+.++++.+. . .++.++.++.+. ...+++.|++
T Consensus 9 ~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~---~~~~~~~i~~~~-----------------------~~~~~~~~~v 61 (93)
T cd02947 9 SAKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y---PKVKFVKVDVDE-----------------------NPELAEEYGV 61 (93)
T ss_pred cCCcEEEEEECCCChhHHHhhHHHHHHHHH-C---CCceEEEEECCC-----------------------ChhHHHhcCc
Confidence 458899999999999999999999998887 2 358888888774 3577889999
Q ss_pred CCCCeeeeeeecCCC
Q psy8729 124 HGIPSLILLAVEAGG 138 (190)
Q Consensus 124 ~~~P~~~l~~id~~g 138 (190)
.++|++++ ++ +|
T Consensus 62 ~~~P~~~~--~~-~g 73 (93)
T cd02947 62 RSIPTFLF--FK-NG 73 (93)
T ss_pred ccccEEEE--EE-CC
Confidence 99999999 75 45
No 112
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.12 E-value=2.8e-10 Score=74.15 Aligned_cols=58 Identities=17% Similarity=0.383 Sum_probs=47.8
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCC
Q psy8729 48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIP 127 (190)
Q Consensus 48 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P 127 (190)
.+..||++||++|+...|.++++++.+.. .+.++.|+.+.+ ..+.++||+.++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~~vd~~~~-----------------------~~~~~~~~v~~vP 55 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD---AVEVEYINVMEN-----------------------PQKAMEYGIMAVP 55 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC---ceEEEEEeCccC-----------------------HHHHHHcCCccCC
Confidence 46789999999999999999999988854 377788877643 4567789999999
Q ss_pred eeee
Q psy8729 128 SLIL 131 (190)
Q Consensus 128 ~~~l 131 (190)
++++
T Consensus 56 t~~~ 59 (82)
T TIGR00411 56 AIVI 59 (82)
T ss_pred EEEE
Confidence 9765
No 113
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.07 E-value=3.7e-10 Score=98.66 Aligned_cols=71 Identities=23% Similarity=0.467 Sum_probs=56.5
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHH
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASL 120 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (190)
++|+++|+||++||++|+.+.+.. .++.+.++ ++.++.++++++.+ .+.++.++
T Consensus 473 ~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~----~~~~v~vDvt~~~~-------------------~~~~l~~~ 529 (571)
T PRK00293 473 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA----DTVLLQADVTANNA-------------------EDVALLKH 529 (571)
T ss_pred cCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc----CCEEEEEECCCCCh-------------------hhHHHHHH
Confidence 589999999999999999998864 55666663 36777777764321 14688999
Q ss_pred cCCCCCCeeeeeeecCCCc
Q psy8729 121 YNVHGIPSLILLAVEAGGR 139 (190)
Q Consensus 121 ~~v~~~P~~~l~~id~~g~ 139 (190)
|++.++|++++ +|++|+
T Consensus 530 ~~v~g~Pt~~~--~~~~G~ 546 (571)
T PRK00293 530 YNVLGLPTILF--FDAQGQ 546 (571)
T ss_pred cCCCCCCEEEE--ECCCCC
Confidence 99999999999 999994
No 114
>KOG0190|consensus
Probab=99.06 E-value=2.4e-10 Score=96.57 Aligned_cols=89 Identities=22% Similarity=0.372 Sum_probs=65.7
Q ss_pred ccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCC
Q psy8729 24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMP 103 (190)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~ 103 (190)
.|...+.+.+++..+.+ .+|-++|.||||||+||+++.|.+++|+++|++. .++.|.-+....++
T Consensus 366 ~pVkvvVgknfd~iv~d---e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~-~~vviAKmDaTaNd----------- 430 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLD---EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD-ENVVIAKMDATAND----------- 430 (493)
T ss_pred CCeEEEeecCHHHHhhc---cccceEEEEcCcccchhhhhhhHHHHHHHHhcCC-CCcEEEEecccccc-----------
Confidence 35666777777777765 6788999999999999999999999999999985 45666555544322
Q ss_pred CCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEEE
Q psy8729 104 WPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVI 143 (190)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~ 143 (190)
.....+.++||+++ .-.+++.+.+
T Consensus 431 --------------~~~~~~~~fPTI~~--~pag~k~~pv 454 (493)
T KOG0190|consen 431 --------------VPSLKVDGFPTILF--FPAGHKSNPV 454 (493)
T ss_pred --------------CccccccccceEEE--ecCCCCCCCc
Confidence 23456777999999 6444433344
No 115
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.05 E-value=6.4e-10 Score=84.29 Aligned_cols=62 Identities=16% Similarity=0.284 Sum_probs=51.4
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
++.+|||+||++||++|+.+.|.|.+++++|+ .+.++-|+.+. ....|++
T Consensus 101 ~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~----~vkFvkI~ad~--------------------------~~~~~~i 150 (192)
T cd02988 101 KDTWVVVHLYKDGIPLCRLLNQHLSELARKFP----DTKFVKIISTQ--------------------------CIPNYPD 150 (192)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHCC----CCEEEEEEhHH--------------------------hHhhCCC
Confidence 35689999999999999999999999999984 36677766541 1468999
Q ss_pred CCCCeeeeeeecCCC
Q psy8729 124 HGIPSLILLAVEAGG 138 (190)
Q Consensus 124 ~~~P~~~l~~id~~g 138 (190)
.++||+++ + ++|
T Consensus 151 ~~lPTlli--y-k~G 162 (192)
T cd02988 151 KNLPTILV--Y-RNG 162 (192)
T ss_pred CCCCEEEE--E-ECC
Confidence 99999999 7 577
No 116
>PTZ00062 glutaredoxin; Provisional
Probab=99.03 E-value=1.1e-10 Score=88.95 Aligned_cols=100 Identities=9% Similarity=0.060 Sum_probs=62.9
Q ss_pred cEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCC
Q psy8729 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHG 125 (190)
Q Consensus 46 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 125 (190)
..++++|||+||++|+.+.|.|.+++++|+ ++.++.|+. + |+|.+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~----~~~F~~V~~-------------------------d------~~V~~ 62 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP----SLEFYVVNL-------------------------A------DANNE 62 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC----CcEEEEEcc-------------------------c------cCccc
Confidence 567999999999999999999999999985 355655532 1 89999
Q ss_pred CCeeeeeeecCCCceEEEcc--ccccccccCCCCCcCCCCcccccccCCCCCCCCCCCCeEEEEE
Q psy8729 126 IPSLILLAVEAGGRLDVITT--EARHELSEDPDGEFFPWPPKLVNVLSPRHCPKLYDSPALILFI 188 (190)
Q Consensus 126 ~P~~~l~~id~~g~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~ 188 (190)
+|++++ + ++| +.+.+ ++....+.......+. ....+.+.++ ++++.+...++|||
T Consensus 63 vPtfv~--~-~~g--~~i~r~~G~~~~~~~~~~~~~~~--~~~~~~~~~~-v~~li~~~~Vvvf~ 119 (204)
T PTZ00062 63 YGVFEF--Y-QNS--QLINSLEGCNTSTLVSFIRGWAQ--KGSSEDTVEK-IERLIRNHKILLFM 119 (204)
T ss_pred ceEEEE--E-ECC--EEEeeeeCCCHHHHHHHHHHHcC--CCCHHHHHHH-HHHHHhcCCEEEEE
Confidence 999999 7 467 33332 2222222211111111 1111223332 44567778888886
No 117
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.02 E-value=1.6e-09 Score=68.03 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=45.9
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCC
Q psy8729 48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIP 127 (190)
Q Consensus 48 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P 127 (190)
-++.|+++||++|+...+.|+++.+.+ +++.+..++.+. ..++.+.||+.++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~----~~i~~~~id~~~-----------------------~~~l~~~~~i~~vP 54 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN----PNISAEMIDAAE-----------------------FPDLADEYGVMSVP 54 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC----CceEEEEEEccc-----------------------CHhHHHHcCCcccC
Confidence 467899999999999999999886653 247777777664 24678899999999
Q ss_pred eeee
Q psy8729 128 SLIL 131 (190)
Q Consensus 128 ~~~l 131 (190)
++++
T Consensus 55 ti~i 58 (67)
T cd02973 55 AIVI 58 (67)
T ss_pred EEEE
Confidence 9877
No 118
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.02 E-value=9.5e-10 Score=93.41 Aligned_cols=82 Identities=24% Similarity=0.419 Sum_probs=61.6
Q ss_pred eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729 27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA 106 (190)
Q Consensus 27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~ 106 (190)
..+...++...+.+ .++.++|+||++||++|+.+.|.+.++++.+.+....+.+..++++.++
T Consensus 349 ~~l~~~~f~~~v~~---~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-------------- 411 (462)
T TIGR01130 349 KVLVGKNFDEIVLD---ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-------------- 411 (462)
T ss_pred EEeeCcCHHHHhcc---CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc--------------
Confidence 34455555544432 5889999999999999999999999999999862125888888776422
Q ss_pred ccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729 107 IPYASETRQSLASLYNVHGIPSLILLAVEAGG 138 (190)
Q Consensus 107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g 138 (190)
+.. +++.++|++++ +.+++
T Consensus 412 ----------~~~-~~i~~~Pt~~~--~~~~~ 430 (462)
T TIGR01130 412 ----------VPP-FEVEGFPTIKF--VPAGK 430 (462)
T ss_pred ----------cCC-CCccccCEEEE--EeCCC
Confidence 223 89999999999 86655
No 119
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.00 E-value=7.4e-09 Score=79.43 Aligned_cols=112 Identities=20% Similarity=0.420 Sum_probs=90.2
Q ss_pred ceeccCCCccceeeeeccCCcEEEEEEEcCCCh-hhhhhhHHHHHHHHHHh-hcCCcEEEEEeeCCC---CHHHHHHHHh
Q psy8729 26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCP-PCKAFTPQLIETYRKLK-EDGYQFEIIFVSSDR---SESSYQSYLS 100 (190)
Q Consensus 26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~-~C~~~~~~l~~l~~~~~-~~g~~~~ii~i~~d~---~~~~~~~~~~ 100 (190)
+|.+.+..|+...+..+ +|++++|+|.-|.|| -|......|.++.+++. ..+.+++++.|++|. .++.++.|..
T Consensus 49 ~f~l~d~~G~~~~~~~l-~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 49 DFELTDQDGKPFTLKDL-KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred ceeeecCCCCEeecccc-CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 68888988888888877 899999999999999 69999999999999998 667889999999984 4678888888
Q ss_pred -CC--CCCcccCCchhHHHHHHHcCCCC--C-------------CeeeeeeecCCCce
Q psy8729 101 -GM--PWPAIPYASETRQSLASLYNVHG--I-------------PSLILLAVEAGGRL 140 (190)
Q Consensus 101 -~~--~~~~~~~~~~~~~~~~~~~~v~~--~-------------P~~~l~~id~~g~~ 140 (190)
.. .|.......+...++.++|++.. + ..+++ +|++|++
T Consensus 128 ~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~l--id~~G~~ 183 (207)
T COG1999 128 LNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYL--IDADGRF 183 (207)
T ss_pred ccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEE--ECCCCeE
Confidence 22 25555555666788899998763 2 24466 8888844
No 120
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.00 E-value=1.6e-09 Score=73.65 Aligned_cols=64 Identities=11% Similarity=0.218 Sum_probs=55.6
Q ss_pred CcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCC
Q psy8729 45 CQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVH 124 (190)
Q Consensus 45 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 124 (190)
++++++.|+++||++|..+.|.+.+++++++++ +.++.|+.+. ...+++.||+.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~-----------------------~~~~~~~~~i~ 65 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADD-----------------------FGRHLEYFGLK 65 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHh-----------------------hHHHHHHcCCC
Confidence 678999999999999999999999999999854 7777777653 35789999999
Q ss_pred --CCCeeeeeeecC
Q psy8729 125 --GIPSLILLAVEA 136 (190)
Q Consensus 125 --~~P~~~l~~id~ 136 (190)
++|++++ ++.
T Consensus 66 ~~~~P~~~~--~~~ 77 (103)
T cd02982 66 EEDLPVIAI--INL 77 (103)
T ss_pred hhhCCEEEE--Eec
Confidence 9999999 766
No 121
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.95 E-value=3.9e-09 Score=68.15 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=41.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS 128 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 128 (190)
.|.||++||++|+...|.+.++.+++.. .+.++-| |+ .....+||+.++|+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~---~~~~~~v--~~------------------------~~~a~~~~v~~vPt 52 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI---DAEFEKV--TD------------------------MNEILEAGVTATPG 52 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC---CeEEEEe--CC------------------------HHHHHHcCCCcCCE
Confidence 3789999999999999999999998753 3555444 32 12256799999998
Q ss_pred eee
Q psy8729 129 LIL 131 (190)
Q Consensus 129 ~~l 131 (190)
+++
T Consensus 53 i~i 55 (76)
T TIGR00412 53 VAV 55 (76)
T ss_pred EEE
Confidence 877
No 122
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.94 E-value=3.7e-09 Score=73.46 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=57.4
Q ss_pred CccceeeeeccCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccC
Q psy8729 33 TVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPY 109 (190)
Q Consensus 33 ~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~ 109 (190)
+++.......+++|+++|+|+++||++|+.+.... .++.+.+.+. +.++.++.+..+
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~---~v~~~~d~~~~e----------------- 64 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN---FIFWQCDIDSSE----------------- 64 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC---EEEEEecCCCcc-----------------
Confidence 34444444555899999999999999999987643 3344445433 555555444212
Q ss_pred CchhHHHHHHHcCCCCCCeeeeeeecC-CCc
Q psy8729 110 ASETRQSLASLYNVHGIPSLILLAVEA-GGR 139 (190)
Q Consensus 110 ~~~~~~~~~~~~~v~~~P~~~l~~id~-~g~ 139 (190)
...+...|++.++|++++ +|+ +|+
T Consensus 65 ----~~~~~~~~~~~~~P~~~~--i~~~~g~ 89 (114)
T cd02958 65 ----GQRFLQSYKVDKYPHIAI--IDPRTGE 89 (114)
T ss_pred ----HHHHHHHhCccCCCeEEE--EeCccCc
Confidence 467889999999999999 999 783
No 123
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.4e-08 Score=75.69 Aligned_cols=117 Identities=18% Similarity=0.281 Sum_probs=86.4
Q ss_pred CcccceeccCC-Cc---cceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCC--HHH
Q psy8729 22 KKTYNIGLAEG-TV---TTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRS--ESS 94 (190)
Q Consensus 22 ~~~~~~~l~~~-~~---~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~--~~~ 94 (190)
...|+|+.+.. .+ ....+.+. .++++++.|| +...+-|..++..+++.+.+|.++| ++++++|+|.. -..
T Consensus 7 ~~aP~F~~~a~~~~~~~~~i~l~d~-~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g--~eVigvS~Ds~fsH~a 83 (194)
T COG0450 7 KKAPDFTANAVLGGEIFEEITLSDY-YGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG--VEVIGVSTDSVFSHKA 83 (194)
T ss_pred CcCCCcEEEEEecCceeeEEechhh-cCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC--CEEEEEecCcHHHHHH
Confidence 34556655443 32 24445444 3499999999 7888999999999999999999985 99999999942 234
Q ss_pred HHHHHhCC-CC--CcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEEE
Q psy8729 95 YQSYLSGM-PW--PAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDVI 143 (190)
Q Consensus 95 ~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~ 143 (190)
|++...+. +. ..+|+..|.+.++++.||+. ++=.+++ ||++|+++.+
T Consensus 84 W~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FI--IDp~g~ir~~ 139 (194)
T COG0450 84 WKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFI--IDPDGVIRHI 139 (194)
T ss_pred HHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEE--ECCCCeEEEE
Confidence 55554434 33 67899999999999999985 3446788 9999976544
No 124
>KOG1731|consensus
Probab=98.90 E-value=5.9e-10 Score=94.53 Aligned_cols=88 Identities=23% Similarity=0.347 Sum_probs=71.2
Q ss_pred ccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCC
Q psy8729 24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMP 103 (190)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~ 103 (190)
.+.+.|...+++..+.. +.+..+|.||++||++|+.+.|.+.++++...++.+-+.+.+|++-++.
T Consensus 39 D~ii~Ld~~tf~~~v~~---~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~----------- 104 (606)
T KOG1731|consen 39 DPIIELDVDTFNAAVFG---SRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE----------- 104 (606)
T ss_pred CCeEEeehhhhHHHhcc---cchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-----------
Confidence 55566666666655554 3356789999999999999999999999999999777888888775444
Q ss_pred CCcccCCchhHHHHHHHcCCCCCCeeeeeeecCC
Q psy8729 104 WPAIPYASETRQSLASLYNVHGIPSLILLAVEAG 137 (190)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~ 137 (190)
+..+|+.|+|..+|++.. +.++
T Consensus 105 ----------N~~lCRef~V~~~Ptlry--f~~~ 126 (606)
T KOG1731|consen 105 ----------NVKLCREFSVSGYPTLRY--FPPD 126 (606)
T ss_pred ----------hhhhHhhcCCCCCceeee--cCCc
Confidence 789999999999999999 5444
No 125
>KOG4277|consensus
Probab=98.88 E-value=2.5e-09 Score=84.53 Aligned_cols=79 Identities=22% Similarity=0.385 Sum_probs=59.0
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
.....+|+||||||.+|+++.|.+.+..-.+++.| ..+-.-.+|... -+.++..|||
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig--~PikVGKlDaT~---------------------f~aiAnefgi 98 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIG--LPIKVGKLDATR---------------------FPAIANEFGI 98 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcC--Cceeeccccccc---------------------chhhHhhhcc
Confidence 45678999999999999999999999988888765 333333344332 3688999999
Q ss_pred CCCCeeeeeeecCCCceEEEcccccc
Q psy8729 124 HGIPSLILLAVEAGGRLDVITTEARH 149 (190)
Q Consensus 124 ~~~P~~~l~~id~~g~~~i~~~~~~~ 149 (190)
+++||+.+ +..+. .+-+++|+.
T Consensus 99 qGYPTIk~--~kgd~--a~dYRG~R~ 120 (468)
T KOG4277|consen 99 QGYPTIKF--FKGDH--AIDYRGGRE 120 (468)
T ss_pred CCCceEEE--ecCCe--eeecCCCcc
Confidence 99999999 75444 455666553
No 126
>PHA02125 thioredoxin-like protein
Probab=98.87 E-value=6.8e-09 Score=66.79 Aligned_cols=51 Identities=25% Similarity=0.568 Sum_probs=38.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS 128 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 128 (190)
++.||++||++|+...|.|.++. +.++-|+.+. ...+.++|++.++||
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~-----------------------~~~l~~~~~v~~~PT 49 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDE-----------------------GVELTAKHHIRSLPT 49 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCC-----------------------CHHHHHHcCCceeCe
Confidence 78999999999999999986431 2344444433 467899999999998
Q ss_pred eee
Q psy8729 129 LIL 131 (190)
Q Consensus 129 ~~l 131 (190)
++.
T Consensus 50 ~~~ 52 (75)
T PHA02125 50 LVN 52 (75)
T ss_pred EEC
Confidence 653
No 127
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.85 E-value=9.7e-09 Score=71.39 Aligned_cols=79 Identities=10% Similarity=0.103 Sum_probs=53.1
Q ss_pred eeccCCCccceeeeeccCCcEEEEEEEc--CCCh---hhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhC
Q psy8729 27 IGLAEGTVTTKVLSYIESCQVIGLYFSA--HWCP---PCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSG 101 (190)
Q Consensus 27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a--~wC~---~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~ 101 (190)
+.|++.+++..+. +.+.++|.|+| +||. +|+.+.|++.+.. ..+.+.-|++++..
T Consensus 4 v~L~~~nF~~~v~----~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa-------~~v~lakVd~~d~~--------- 63 (116)
T cd03007 4 VDLDTVTFYKVIP----KFKYSLVKFDTAYPYGEKHEAFTRLAESSASAT-------DDLLVAEVGIKDYG--------- 63 (116)
T ss_pred eECChhhHHHHHh----cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhc-------CceEEEEEeccccc---------
Confidence 5577777776554 67889999999 7777 6666665554322 13556666654210
Q ss_pred CCCCcccCCchhHHHHHHHcCCC--CCCeeeeeeecC
Q psy8729 102 MPWPAIPYASETRQSLASLYNVH--GIPSLILLAVEA 136 (190)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~v~--~~P~~~l~~id~ 136 (190)
...+..++++|+|. ++||+.+ +.+
T Consensus 64 ---------~~~~~~L~~~y~I~~~gyPTl~l--F~~ 89 (116)
T cd03007 64 ---------EKLNMELGERYKLDKESYPVIYL--FHG 89 (116)
T ss_pred ---------chhhHHHHHHhCCCcCCCCEEEE--EeC
Confidence 00147899999999 9999999 643
No 128
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.83 E-value=1.8e-08 Score=77.76 Aligned_cols=67 Identities=24% Similarity=0.330 Sum_probs=52.4
Q ss_pred CCcEEEEEEEc---CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHH
Q psy8729 44 SCQVIGLYFSA---HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASL 120 (190)
Q Consensus 44 ~~k~vlv~F~a---~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (190)
++...++.|++ +||++|+.+.|.+.++++++. ++.+..+++|.+. ...+++.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~----~~~i~~v~vd~~~---------------------~~~l~~~ 72 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP----KLKLEIYDFDTPE---------------------DKEEAEK 72 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC----CceEEEEecCCcc---------------------cHHHHHH
Confidence 34455666877 999999999999999998873 2555566666433 4789999
Q ss_pred cCCCCCCeeeeeeecCCC
Q psy8729 121 YNVHGIPSLILLAVEAGG 138 (190)
Q Consensus 121 ~~v~~~P~~~l~~id~~g 138 (190)
|+|.++||+++ ++ +|
T Consensus 73 ~~V~~~Pt~~~--f~-~g 87 (215)
T TIGR02187 73 YGVERVPTTII--LE-EG 87 (215)
T ss_pred cCCCccCEEEE--Ee-CC
Confidence 99999999999 85 55
No 129
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.83 E-value=2.7e-09 Score=75.52 Aligned_cols=77 Identities=14% Similarity=0.238 Sum_probs=48.4
Q ss_pred cceeeeeccCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCc
Q psy8729 35 TTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111 (190)
Q Consensus 35 ~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~ 111 (190)
++.+.....++|+++|+|++.||++|+.+...+ .++.+...+. +.++.+..|..+.
T Consensus 13 eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~---Fv~V~l~~d~td~------------------ 71 (130)
T cd02960 13 EEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQED---FIMLNLVHETTDK------------------ 71 (130)
T ss_pred HHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhC---eEEEEEEeccCCC------------------
Confidence 334444445899999999999999999998865 2333443332 5444444442210
Q ss_pred hhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729 112 ETRQSLASLYNVHGIPSLILLAVEAGGRL 140 (190)
Q Consensus 112 ~~~~~~~~~~~v~~~P~~~l~~id~~g~~ 140 (190)
+.. ..| .++|++++ +|++|++
T Consensus 72 --~~~---~~g-~~vPtivF--ld~~g~v 92 (130)
T cd02960 72 --NLS---PDG-QYVPRIMF--VDPSLTV 92 (130)
T ss_pred --CcC---ccC-cccCeEEE--ECCCCCC
Confidence 000 123 47999999 9999944
No 130
>KOG0912|consensus
Probab=98.76 E-value=2.2e-08 Score=79.21 Aligned_cols=71 Identities=21% Similarity=0.417 Sum_probs=62.5
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
....++|.|||.||+.++.+.|.+.+.+++++.+.++-+++...+|.+. ...++.+|.|
T Consensus 12 s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~---------------------e~~ia~ky~I 70 (375)
T KOG0912|consen 12 SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDK---------------------EDDIADKYHI 70 (375)
T ss_pred cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccch---------------------hhHHhhhhcc
Confidence 5789999999999999999999999999999988777778888888665 4688999999
Q ss_pred CCCCeeeeeeecCCC
Q psy8729 124 HGIPSLILLAVEAGG 138 (190)
Q Consensus 124 ~~~P~~~l~~id~~g 138 (190)
..+||+-+ + ++|
T Consensus 71 ~KyPTlKv--f-rnG 82 (375)
T KOG0912|consen 71 NKYPTLKV--F-RNG 82 (375)
T ss_pred ccCceeee--e-ecc
Confidence 99999999 6 566
No 131
>KOG0191|consensus
Probab=98.76 E-value=2.6e-08 Score=83.31 Aligned_cols=66 Identities=27% Similarity=0.513 Sum_probs=55.4
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
.++..+|.||++||.+|+.+.|.+.++.+.+++. +.+ .++|.+. ...++++|++
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~---~~~--~~vd~~~---------------------~~~~~~~y~i 99 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK---VKI--GAVDCDE---------------------HKDLCEKYGI 99 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc---eEE--EEeCchh---------------------hHHHHHhcCC
Confidence 6778999999999999999999999999998763 444 4445433 5799999999
Q ss_pred CCCCeeeeeeecCC
Q psy8729 124 HGIPSLILLAVEAG 137 (190)
Q Consensus 124 ~~~P~~~l~~id~~ 137 (190)
.++||+.+ +.++
T Consensus 100 ~gfPtl~~--f~~~ 111 (383)
T KOG0191|consen 100 QGFPTLKV--FRPG 111 (383)
T ss_pred ccCcEEEE--EcCC
Confidence 99999999 7666
No 132
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.75 E-value=3.7e-08 Score=76.06 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=50.3
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
++.++++.||++||++|+...+.++++..+. +++.+..++.+. ...+.++|+|
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~----~~i~~~~vD~~~-----------------------~~~~~~~~~V 184 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAN----DKILGEMIEANE-----------------------NPDLAEKYGV 184 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhc----CceEEEEEeCCC-----------------------CHHHHHHhCC
Confidence 4555677799999999999999988887763 246666666554 3578889999
Q ss_pred CCCCeeeeeeecCCC
Q psy8729 124 HGIPSLILLAVEAGG 138 (190)
Q Consensus 124 ~~~P~~~l~~id~~g 138 (190)
.++|++++ . .+|
T Consensus 185 ~~vPtl~i--~-~~~ 196 (215)
T TIGR02187 185 MSVPKIVI--N-KGV 196 (215)
T ss_pred ccCCEEEE--e-cCC
Confidence 99999988 5 456
No 133
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.75 E-value=5.8e-08 Score=64.56 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=50.2
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
.+.+.+..|+++||++|....+.++++.+.++ ++.+..++.+. ..++++.|+|
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~----~i~~~~vd~~~-----------------------~~e~a~~~~V 63 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP----NIEHEMIDGAL-----------------------FQDEVEERGI 63 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC----CceEEEEEhHh-----------------------CHHHHHHcCC
Confidence 67777899999999999999999999887753 46777777663 3567899999
Q ss_pred CCCCeeee
Q psy8729 124 HGIPSLIL 131 (190)
Q Consensus 124 ~~~P~~~l 131 (190)
.++|++++
T Consensus 64 ~~vPt~vi 71 (89)
T cd03026 64 MSVPAIFL 71 (89)
T ss_pred ccCCEEEE
Confidence 99999965
No 134
>smart00594 UAS UAS domain.
Probab=98.74 E-value=3.7e-08 Score=69.35 Aligned_cols=82 Identities=18% Similarity=0.340 Sum_probs=59.7
Q ss_pred CCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcc
Q psy8729 31 EGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAI 107 (190)
Q Consensus 31 ~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~ 107 (190)
.++++........++|.++|+|+++||+.|+.+...+ .++.+.+.+ ++.++.++++..+
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~e--------------- 74 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTSE--------------- 74 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCChh---------------
Confidence 3455566555556899999999999999999987754 334444433 2555555544332
Q ss_pred cCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729 108 PYASETRQSLASLYNVHGIPSLILLAVEAGG 138 (190)
Q Consensus 108 ~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g 138 (190)
...+..+|++.++|++.+ ++++|
T Consensus 75 ------g~~l~~~~~~~~~P~~~~--l~~~~ 97 (122)
T smart00594 75 ------GQRVSQFYKLDSFPYVAI--VDPRT 97 (122)
T ss_pred ------HHHHHHhcCcCCCCEEEE--EecCC
Confidence 467899999999999999 99886
No 135
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.74 E-value=2.1e-08 Score=65.56 Aligned_cols=47 Identities=28% Similarity=0.603 Sum_probs=34.6
Q ss_pred eccCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCC
Q psy8729 41 YIESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDR 90 (190)
Q Consensus 41 ~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~ 90 (190)
...++|+++|+|+++||++|+.+...+ .++.+.+.++ +..+.+..+.
T Consensus 13 A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~---fv~v~vd~~~ 62 (82)
T PF13899_consen 13 AKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN---FVLVKVDVDD 62 (82)
T ss_dssp HHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC---SEEEEEETTT
T ss_pred HHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC---EEEEEEEcCC
Confidence 334799999999999999999998877 3444445543 6666666653
No 136
>KOG2792|consensus
Probab=98.73 E-value=2.2e-07 Score=72.01 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=95.2
Q ss_pred cceeccCCCccceeeeeccCCcEEEEEEEcCCCh-hhhhhhHHHHHHHHHHhhc-CCcEEEEEeeCCC---CHHHHHHHH
Q psy8729 25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCP-PCKAFTPQLIETYRKLKED-GYQFEIIFVSSDR---SESSYQSYL 99 (190)
Q Consensus 25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~-~C~~~~~~l~~l~~~~~~~-g~~~~ii~i~~d~---~~~~~~~~~ 99 (190)
..|+|.+..|......++ .|++++++|.-|.|| -|..++..|.++.+++.+. |....-++|++|. +.+.+..|+
T Consensus 120 GpF~L~d~~Gk~~te~df-~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~ 198 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDF-LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYV 198 (280)
T ss_pred CceEEEecCCCeeccccc-ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHH
Confidence 457788888888888887 899999999999999 6999999999998888765 4445578999986 678899999
Q ss_pred hCCC--CCcccCCchhHHHHHHHcCCC--CCC-------------eeeeeeecCCCceEEEcccccc
Q psy8729 100 SGMP--WPAIPYASETRQSLASLYNVH--GIP-------------SLILLAVEAGGRLDVITTEARH 149 (190)
Q Consensus 100 ~~~~--~~~~~~~~~~~~~~~~~~~v~--~~P-------------~~~l~~id~~g~~~i~~~~~~~ 149 (190)
++.. ...++-+.+.-.++++.|-|. .-| .+|+ ||++| +.+..-|+.
T Consensus 199 ~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYL--idPeg--~Fvd~~GrN 261 (280)
T KOG2792|consen 199 SEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYL--IDPEG--EFVDYYGRN 261 (280)
T ss_pred HhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEE--ECCCc--ceehhhccc
Confidence 9885 466777777788999999874 213 3456 99999 777665543
No 137
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.68 E-value=6.5e-08 Score=74.63 Aligned_cols=76 Identities=26% Similarity=0.359 Sum_probs=62.1
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
..++-+++|+.+.|+.|+...|.|+.++++| ++.++.||+|... ...+|.... +..+.+++|+
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-----g~~v~~vs~DG~~-----------~~~fp~~~~-~~g~~~~l~v 181 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY-----GFSVIPVSLDGRP-----------IPSFPNPRP-DPGQAKRLGV 181 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-----CCEEEEEecCCCC-----------CcCCCCCCC-CHHHHHHcCC
Confidence 5778899999999999999999999999998 3889999998532 123333322 5778889999
Q ss_pred CCCCeeeeeeecCCC
Q psy8729 124 HGIPSLILLAVEAGG 138 (190)
Q Consensus 124 ~~~P~~~l~~id~~g 138 (190)
..+|++++ +++++
T Consensus 182 ~~~Pal~L--v~~~~ 194 (215)
T PF13728_consen 182 KVTPALFL--VNPNT 194 (215)
T ss_pred CcCCEEEE--EECCC
Confidence 99999999 99977
No 138
>KOG0855|consensus
Probab=98.57 E-value=6.2e-07 Score=65.21 Aligned_cols=103 Identities=19% Similarity=0.253 Sum_probs=83.6
Q ss_pred CCcccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729 21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL 99 (190)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~ 99 (190)
+...|+|+|.|.++....+..+..++++|++|| +...|-|.+..=.+..-|++++..+ ..+++++.|. ....+.|.
T Consensus 66 Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~--aeV~GlS~D~-s~sqKaF~ 142 (211)
T KOG0855|consen 66 GDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG--AEVIGLSGDD-SASQKAFA 142 (211)
T ss_pred CCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC--ceEEeeccCc-hHHHHHhh
Confidence 557799999999988888888877888888888 5667889999888988899988753 8899999884 44577888
Q ss_pred hCCCCCcccCCchhHHHHHHHcCCCCCC
Q psy8729 100 SGMPWPAIPYASETRQSLASLYNVHGIP 127 (190)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P 127 (190)
.++.+ .+.++.|...++.+.+|+...|
T Consensus 143 sKqnl-PYhLLSDpk~e~ik~lGa~k~p 169 (211)
T KOG0855|consen 143 SKQNL-PYHLLSDPKNEVIKDLGAPKDP 169 (211)
T ss_pred hhccC-CeeeecCcchhHHHHhCCCCCC
Confidence 77764 4556688889999999998766
No 139
>KOG0191|consensus
Probab=98.50 E-value=6.6e-07 Score=74.89 Aligned_cols=107 Identities=25% Similarity=0.310 Sum_probs=71.1
Q ss_pred hhhHHHHHhhhCCCCCCCCCcc-c-ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCc
Q psy8729 3 KESDQLYNNLLKPGGSKGAKKT-Y-NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQ 80 (190)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~ 80 (190)
.+++.+++...+.......... . .+.+...++...+.+ .....+|.||+|||++|+.++|.+.++.+.+.. +..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~---~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~ 196 (383)
T KOG0191|consen 121 RNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKD---SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KEN 196 (383)
T ss_pred ccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhc---cCcceEEEEeccccHHhhhcChHHHHHHHHhcc-Ccc
Confidence 3445555444333333322212 2 344555554444433 356688999999999999999999999998875 235
Q ss_pred EEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729 81 FEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGG 138 (190)
Q Consensus 81 ~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g 138 (190)
+.+..++.+. ...++..+++..+|++.+ +.++.
T Consensus 197 v~~~~~d~~~-----------------------~~~~~~~~~v~~~Pt~~~--f~~~~ 229 (383)
T KOG0191|consen 197 VELGKIDATV-----------------------HKSLASRLEVRGYPTLKL--FPPGE 229 (383)
T ss_pred eEEEeeccch-----------------------HHHHhhhhcccCCceEEE--ecCCC
Confidence 7776665541 468899999999999999 65555
No 140
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.47 E-value=6.7e-07 Score=60.48 Aligned_cols=62 Identities=34% Similarity=0.630 Sum_probs=48.3
Q ss_pred CcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC--
Q psy8729 45 CQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN-- 122 (190)
Q Consensus 45 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 122 (190)
++++++.||++||++|+...|.+.++.+++.. .+.++.++..+. ...+...|+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~~~~----------------------~~~~~~~~~~~ 86 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNVDDE----------------------NPDLAAEFGVA 86 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEECCCC----------------------ChHHHHHHhhh
Confidence 78899999999999999999999999999865 366777776510 245555666
Q ss_pred CCCCCeeee
Q psy8729 123 VHGIPSLIL 131 (190)
Q Consensus 123 v~~~P~~~l 131 (190)
+..+|++.+
T Consensus 87 ~~~~p~~~~ 95 (127)
T COG0526 87 VRSIPTLLL 95 (127)
T ss_pred hccCCeEEE
Confidence 777787776
No 141
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.47 E-value=6.3e-07 Score=62.52 Aligned_cols=74 Identities=26% Similarity=0.588 Sum_probs=49.0
Q ss_pred CCcEEEEEEEc-------CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHH
Q psy8729 44 SCQVIGLYFSA-------HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQS 116 (190)
Q Consensus 44 ~~k~vlv~F~a-------~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (190)
++++++|.|++ +|||.|+...|.+++.....++ +..++.+.+.. ..+|+ +.++.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~VG~-r~~Wk---------------dp~n~ 78 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEVGD-RPEWK---------------DPNNP 78 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE----HHHHC----------------TTSH
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEcCC-HHHhC---------------CCCCC
Confidence 66788888886 6999999999999987777544 37777777763 23332 22466
Q ss_pred HHH--HcCCCCCCeeeeeeecCCC
Q psy8729 117 LAS--LYNVHGIPSLILLAVEAGG 138 (190)
Q Consensus 117 ~~~--~~~v~~~P~~~l~~id~~g 138 (190)
+.+ .+++.++||++- ++..+
T Consensus 79 fR~~p~~~l~~IPTLi~--~~~~~ 100 (119)
T PF06110_consen 79 FRTDPDLKLKGIPTLIR--WETGE 100 (119)
T ss_dssp HHH--CC---SSSEEEE--CTSS-
T ss_pred ceEcceeeeeecceEEE--ECCCC
Confidence 777 699999999999 87665
No 142
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.46 E-value=4.8e-07 Score=64.29 Aligned_cols=71 Identities=18% Similarity=0.353 Sum_probs=43.6
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHH---
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASL--- 120 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 120 (190)
..+..++.|..+||+.|....|.|.++++..+ ++.+-.+..|.+. ++..+
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~~-----------------------el~~~~lt 92 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDENK-----------------------ELMDQYLT 92 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHHH-----------------------HHTTTTTT
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCCh-----------------------hHHHHHHh
Confidence 46667889999999999999999999988753 3666666665433 22222
Q ss_pred cCCCCCCeeeeeeecCCCceEEEcc
Q psy8729 121 YNVHGIPSLILLAVEAGGRLDVITT 145 (190)
Q Consensus 121 ~~v~~~P~~~l~~id~~g~~~i~~~ 145 (190)
.|..++|++++ +|++| +.+.+
T Consensus 93 ~g~~~IP~~I~--~d~~~--~~lg~ 113 (129)
T PF14595_consen 93 NGGRSIPTFIF--LDKDG--KELGR 113 (129)
T ss_dssp -SS--SSEEEE--E-TT----EEEE
T ss_pred CCCeecCEEEE--EcCCC--CEeEE
Confidence 47889999999 99998 55543
No 143
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.44 E-value=8.2e-07 Score=69.96 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=61.9
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
..+.-+++||.+.|+.|..+.|.++.++++|. +.++.||+|... ...+|.... +...++++|+
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-----i~v~~VS~DG~~-----------~p~fp~~~~-d~gqa~~l~v 211 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-----ISVIPISVDGTL-----------IPGLPNSRS-DSGQAQHLGV 211 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCCCC-----------CCCCCCccC-ChHHHHhcCC
Confidence 46688999999999999999999999999983 889999999532 123444322 5677889999
Q ss_pred CCCCeeeeeeecCCC
Q psy8729 124 HGIPSLILLAVEAGG 138 (190)
Q Consensus 124 ~~~P~~~l~~id~~g 138 (190)
..+|++++ ++++.
T Consensus 212 ~~~Pal~L--v~~~t 224 (256)
T TIGR02739 212 KYFPALYL--VNPKS 224 (256)
T ss_pred ccCceEEE--EECCC
Confidence 99999999 99984
No 144
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.43 E-value=1.4e-06 Score=52.35 Aligned_cols=63 Identities=30% Similarity=0.559 Sum_probs=47.1
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS 128 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 128 (190)
++.||++||++|+...+.+.++ .... .++.+..++.+...+. ......+++..+|+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~P~ 56 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLN--KGVKFEAVDVDEDPAL--------------------EKELKRYGVGGVPT 56 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhC--CCcEEEEEEcCCChHH--------------------hhHHHhCCCccccE
Confidence 4789999999999999999988 2222 3588888888754421 11135788999999
Q ss_pred eeeeeecCC
Q psy8729 129 LILLAVEAG 137 (190)
Q Consensus 129 ~~l~~id~~ 137 (190)
+++ ++.+
T Consensus 57 ~~~--~~~~ 63 (69)
T cd01659 57 LVV--FGPG 63 (69)
T ss_pred EEE--EeCC
Confidence 999 7654
No 145
>KOG0852|consensus
Probab=98.40 E-value=4.9e-06 Score=61.04 Aligned_cols=112 Identities=20% Similarity=0.285 Sum_probs=86.6
Q ss_pred ccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHh---CC--
Q psy8729 29 LAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS---GM-- 102 (190)
Q Consensus 29 l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~---~~-- 102 (190)
+-++.+.+..++++ .|+++++.|| ..+.--|..++-.+...+.++++. +-+++++|+| +......|++ +.
T Consensus 18 VVdG~f~e~~L~dy-~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~--n~eVig~S~D-S~fshlAW~ntprk~gG 93 (196)
T KOG0852|consen 18 VVDGEFKEIKLSDY-KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKL--NTEVLGISTD-SVFSHLAWINTPRKQGG 93 (196)
T ss_pred EEcCcceEEeehhh-cccEEEEEecCCceeeECchhhhhhhhhHHHHHhc--CCeEEEEecc-chhhhhhHhcCchhhCC
Confidence 34566777777776 7899999988 566668999999999999999986 5999999998 4555556665 22
Q ss_pred -CCCcccCCchhHHHHHHHcCCC----C--CCeeeeeeecCCCceEEEccc
Q psy8729 103 -PWPAIPYASETRQSLASLYNVH----G--IPSLILLAVEAGGRLDVITTE 146 (190)
Q Consensus 103 -~~~~~~~~~~~~~~~~~~~~v~----~--~P~~~l~~id~~g~~~i~~~~ 146 (190)
+-..+|+..|.+.++++.||+- + +-.+++ ||++|.++.++.+
T Consensus 94 lg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfI--Id~~gi~R~it~N 142 (196)
T KOG0852|consen 94 LGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFI--IDPDGILRQITIN 142 (196)
T ss_pred cCccccceeeccchhhHHhcCceecCCCcceeeeEE--EccccceEEeeec
Confidence 3456899999999999999983 3 446788 9999977665544
No 146
>KOG3425|consensus
Probab=98.36 E-value=5.1e-07 Score=62.03 Aligned_cols=74 Identities=22% Similarity=0.442 Sum_probs=57.9
Q ss_pred cCCcEEEEEEEc--------CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhH
Q psy8729 43 ESCQVIGLYFSA--------HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETR 114 (190)
Q Consensus 43 ~~~k~vlv~F~a--------~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (190)
.+++.++|+|.+ ||||.|....|.+.+..+..++ ++.++.+.+. ..|+..+.+
T Consensus 23 ~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~---~~~~v~v~VG----------------~rp~Wk~p~ 83 (128)
T KOG3425|consen 23 ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE---DVHFVHVYVG----------------NRPYWKDPA 83 (128)
T ss_pred hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC---ceEEEEEEec----------------CCCcccCCC
Confidence 366668888886 7999999999999887775554 4777777766 345666667
Q ss_pred HHHHHHcCC-CCCCeeeeeeecCC
Q psy8729 115 QSLASLYNV-HGIPSLILLAVEAG 137 (190)
Q Consensus 115 ~~~~~~~~v-~~~P~~~l~~id~~ 137 (190)
..+.+..++ .++||+.- .++.
T Consensus 84 n~FR~d~~~lt~vPTLlr--w~~~ 105 (128)
T KOG3425|consen 84 NPFRKDPGILTAVPTLLR--WKRQ 105 (128)
T ss_pred CccccCCCceeecceeeE--EcCc
Confidence 888888888 89999999 8743
No 147
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.34 E-value=1.8e-06 Score=67.65 Aligned_cols=76 Identities=20% Similarity=0.188 Sum_probs=60.3
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
..++-|++||.+.|++|..+.|.|+.+.++|. +.++.||+|... .+.+|..-. +....+.+|+
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-----~~v~~VS~DG~~-----------~p~fp~~~~-d~gqa~~l~v 204 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG-----LSVIPVSVDGVI-----------NPLLPDSRT-DQGQAQRLGV 204 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCCCC-----------CCCCCCCcc-ChhHHHhcCC
Confidence 45678999999999999999999999999983 889999998532 123444322 4455689999
Q ss_pred CCCCeeeeeeecCCC
Q psy8729 124 HGIPSLILLAVEAGG 138 (190)
Q Consensus 124 ~~~P~~~l~~id~~g 138 (190)
..+|++++ ++++.
T Consensus 205 ~~~PAl~L--v~~~t 217 (248)
T PRK13703 205 KYFPALML--VDPKS 217 (248)
T ss_pred cccceEEE--EECCC
Confidence 99999999 99975
No 148
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.33 E-value=2.4e-06 Score=55.51 Aligned_cols=60 Identities=20% Similarity=0.418 Sum_probs=42.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS 128 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 128 (190)
|+.|+++|||+|+...+.|.++. ++. .+.++-|+.+.+..++ ...+.+.+|+..+|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~~~------------------~~~l~~~~g~~~vP~ 57 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGSEI------------------QDYLEEITGQRTVPN 57 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChHHH------------------HHHHHHHhCCCCCCe
Confidence 47899999999999999998764 221 2667777665433221 223566678999999
Q ss_pred eee
Q psy8729 129 LIL 131 (190)
Q Consensus 129 ~~l 131 (190)
+++
T Consensus 58 v~i 60 (84)
T TIGR02180 58 IFI 60 (84)
T ss_pred EEE
Confidence 876
No 149
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.26 E-value=5.4e-06 Score=52.13 Aligned_cols=55 Identities=18% Similarity=0.567 Sum_probs=40.2
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS 128 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 128 (190)
+..|+++||++|+...+.|.+ . ++.+..++++.+.+. ...+.+.+++.++|+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~--~i~~~~vdi~~~~~~-------------------~~~~~~~~~~~~vP~ 53 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------K--GIAFEEIDVEKDSAA-------------------REEVLKVLGQRGVPV 53 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------C--CCeEEEEeccCCHHH-------------------HHHHHHHhCCCcccE
Confidence 467999999999999887753 2 255666776654421 245677889999998
Q ss_pred eee
Q psy8729 129 LIL 131 (190)
Q Consensus 129 ~~l 131 (190)
+++
T Consensus 54 ~~~ 56 (74)
T TIGR02196 54 IVI 56 (74)
T ss_pred EEE
Confidence 887
No 150
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.21 E-value=3.7e-06 Score=61.71 Aligned_cols=80 Identities=19% Similarity=0.310 Sum_probs=42.2
Q ss_pred cCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCH-HHHHHHHhCCCCCcccCCchhHHHHH
Q psy8729 43 ESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSE-SSYQSYLSGMPWPAIPYASETRQSLA 118 (190)
Q Consensus 43 ~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (190)
.++|+++|.++.+||..|+.+..+. .++++.+... +|.|.+|.++ .++.... .....
T Consensus 35 ~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~-----FI~VkvDree~Pdid~~y--------------~~~~~ 95 (163)
T PF03190_consen 35 KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN-----FIPVKVDREERPDIDKIY--------------MNAVQ 95 (163)
T ss_dssp HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH------EEEEEETTT-HHHHHHH--------------HHHHH
T ss_pred hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC-----EEEEEeccccCccHHHHH--------------HHHHH
Confidence 4799999999999999999987632 3344444443 5555555433 1111111 11112
Q ss_pred HHcCCCCCCeeeeeeecCCCceEEEcc
Q psy8729 119 SLYNVHGIPSLILLAVEAGGRLDVITT 145 (190)
Q Consensus 119 ~~~~v~~~P~~~l~~id~~g~~~i~~~ 145 (190)
...|..+.|++++ ++++| +.+..
T Consensus 96 ~~~~~gGwPl~vf--ltPdg--~p~~~ 118 (163)
T PF03190_consen 96 AMSGSGGWPLTVF--LTPDG--KPFFG 118 (163)
T ss_dssp HHHS---SSEEEE--E-TTS---EEEE
T ss_pred HhcCCCCCCceEE--ECCCC--Ceeee
Confidence 2237889999999 99999 55543
No 151
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.10 E-value=6.5e-06 Score=70.87 Aligned_cols=71 Identities=17% Similarity=0.346 Sum_probs=51.9
Q ss_pred CcEEEEEEEcCCChhhhhhhHHHH-HHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 45 CQVIGLYFSAHWCPPCKAFTPQLI-ETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 45 ~k~vlv~F~a~wC~~C~~~~~~l~-~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
+|+|+|+|||.||-.||...+..- +-....+- .++.++-++...+.. .+.++.++|++
T Consensus 474 ~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~--~~~vlLqaDvT~~~p-------------------~~~~lLk~~~~ 532 (569)
T COG4232 474 AKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL--QDVVLLQADVTANDP-------------------AITALLKRLGV 532 (569)
T ss_pred CCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc--CCeEEEEeeecCCCH-------------------HHHHHHHHcCC
Confidence 349999999999999999988552 33233322 246666666543321 26788999999
Q ss_pred CCCCeeeeeeecCCC
Q psy8729 124 HGIPSLILLAVEAGG 138 (190)
Q Consensus 124 ~~~P~~~l~~id~~g 138 (190)
-+.|++++ ++++|
T Consensus 533 ~G~P~~~f--f~~~g 545 (569)
T COG4232 533 FGVPTYLF--FGPQG 545 (569)
T ss_pred CCCCEEEE--ECCCC
Confidence 99999999 99888
No 152
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=9.3e-05 Score=53.17 Aligned_cols=122 Identities=15% Similarity=0.173 Sum_probs=91.9
Q ss_pred CCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHH
Q psy8729 19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY 98 (190)
Q Consensus 19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~ 98 (190)
..+..+|+|++.+.+.....+..+...+.++..|-+=..+-|......+++.+.++. +..++.||.| -+....+|
T Consensus 19 ~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~----~~~Vl~IS~D-LPFAq~Rf 93 (158)
T COG2077 19 QVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG----NTVVLCISMD-LPFAQKRF 93 (158)
T ss_pred ccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC----CcEEEEEeCC-ChhHHhhh
Confidence 335678899999888888888776444445555668888999999999998888774 3789999988 67778889
Q ss_pred HhCCCCCcccCCchh-HHHHHHHcCC--CCCC-------eeeeeeecCCCceEEEcccccc
Q psy8729 99 LSGMPWPAIPYASET-RQSLASLYNV--HGIP-------SLILLAVEAGGRLDVITTEARH 149 (190)
Q Consensus 99 ~~~~~~~~~~~~~~~-~~~~~~~~~v--~~~P-------~~~l~~id~~g~~~i~~~~~~~ 149 (190)
-...+..++....|. +.++.+.||+ ..-| ..++ +|.+| ++.+..-..
T Consensus 94 C~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V--~De~g--~V~y~elv~ 150 (158)
T COG2077 94 CGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFV--LDENG--KVTYSELVP 150 (158)
T ss_pred hhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEE--EcCCC--cEEEEEccc
Confidence 988888776666666 6779999996 3445 5677 99999 666654433
No 153
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.05 E-value=2.8e-05 Score=49.46 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=18.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHH
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIET 70 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l 70 (190)
++.||++||++|+...+.|.++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~ 23 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL 23 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc
Confidence 5789999999999999988543
No 154
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.93 E-value=4.2e-05 Score=59.24 Aligned_cols=106 Identities=19% Similarity=0.338 Sum_probs=73.9
Q ss_pred ceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEee----CC--------------CCH----H
Q psy8729 36 TKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVS----SD--------------RSE----S 93 (190)
Q Consensus 36 ~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~----~d--------------~~~----~ 93 (190)
..+.+..+.++++||.|.+-.||+=..-+++++++.++|.+. .++-+|+|. .| .+. .
T Consensus 93 ~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHpsDgW~~~~~~~~i~qh~sledR~~ 171 (237)
T PF00837_consen 93 CRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHPSDGWAFGNNPYEIPQHRSLEDRLR 171 (237)
T ss_pred eeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCcCCCccCCCCceeecCCCCHHHHHH
Confidence 566777778999999999999999999999999999999875 345565552 11 011 2
Q ss_pred HHHHHHhCCCCCcccCCchh-HHHHHHHcCCCCCCeeeeeeecCCCceEEEccccccc
Q psy8729 94 SYQSYLSGMPWPAIPYASET-RQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHE 150 (190)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~~~~~~ 150 (190)
.++.+.++. ...|+..|. ++...++||..-- .+|+ | .+| ++++.+|.+.
T Consensus 172 aA~~l~~~~--~~~pi~vD~mdN~~~~~YgA~Pe-RlyI--i-~~g--kv~Y~Gg~GP 221 (237)
T PF00837_consen 172 AAKLLKEEF--PQCPIVVDTMDNNFNKAYGALPE-RLYI--I-QDG--KVVYKGGPGP 221 (237)
T ss_pred HHHHHHhhC--CCCCEEEEccCCHHHHHhCCCcc-eEEE--E-ECC--EEEEeCCCCC
Confidence 233333333 355666665 6788888886532 3455 5 589 8888888764
No 155
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.90 E-value=7.9e-05 Score=48.80 Aligned_cols=60 Identities=17% Similarity=0.296 Sum_probs=41.3
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC--CCCC
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN--VHGI 126 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~ 126 (190)
++.|+.+|||+|++....|+++..++. ++.+..++++.+..+ ...+.+.++ +..+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~----~i~~~~idi~~~~~~-------------------~~el~~~~~~~~~~v 59 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD----DFDYRYVDIHAEGIS-------------------KADLEKTVGKPVETV 59 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc----CCcEEEEECCCChHH-------------------HHHHHHHHCCCCCcC
Confidence 678899999999999999999887652 255556666543211 233444444 4789
Q ss_pred Ceeee
Q psy8729 127 PSLIL 131 (190)
Q Consensus 127 P~~~l 131 (190)
|++++
T Consensus 60 P~ifi 64 (85)
T PRK11200 60 PQIFV 64 (85)
T ss_pred CEEEE
Confidence 99877
No 156
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.89 E-value=7.2e-05 Score=45.57 Aligned_cols=55 Identities=27% Similarity=0.445 Sum_probs=38.2
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS 128 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 128 (190)
++.|+.+|||+|+.....|.+ .| +..-.++++.+++. ...+.+..|..++|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-------~~--i~y~~~dv~~~~~~-------------------~~~l~~~~g~~~~P~ 52 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-------KG--IPYEEVDVDEDEEA-------------------REELKELSGVRTVPQ 52 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-------TT--BEEEEEEGGGSHHH-------------------HHHHHHHHSSSSSSE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-------cC--CeeeEcccccchhH-------------------HHHHHHHcCCCccCE
Confidence 567899999999999988832 22 44455555543311 355566669999999
Q ss_pred eee
Q psy8729 129 LIL 131 (190)
Q Consensus 129 ~~l 131 (190)
+++
T Consensus 53 v~i 55 (60)
T PF00462_consen 53 VFI 55 (60)
T ss_dssp EEE
T ss_pred EEE
Confidence 988
No 157
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00017 Score=52.20 Aligned_cols=92 Identities=18% Similarity=0.367 Sum_probs=59.7
Q ss_pred cCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHH
Q psy8729 43 ESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLAS 119 (190)
Q Consensus 43 ~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (190)
..+|..++.|-++.|+.|.++-..+ .++++-+.+ ++.++.+....+... .|...-. ...-...++++
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~---hf~~~~l~i~~skpv--~f~~g~k-----ee~~s~~ELa~ 109 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE---HFSAYYLNISYSKPV--LFKVGDK-----EEKMSTEELAQ 109 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh---CeEEEEEEeccCcce--EeecCce-----eeeecHHHHHH
Confidence 4799999999999999999987766 345555544 377777766543310 0000000 00011468999
Q ss_pred HcCCCCCCeeeeeeecCCCceEEEcccc
Q psy8729 120 LYNVHGIPSLILLAVEAGGRLDVITTEA 147 (190)
Q Consensus 120 ~~~v~~~P~~~l~~id~~g~~~i~~~~~ 147 (190)
.|+++++|++++ .|++|+. +....|
T Consensus 110 kf~vrstPtfvF--fdk~Gk~-Il~lPG 134 (182)
T COG2143 110 KFAVRSTPTFVF--FDKTGKT-ILELPG 134 (182)
T ss_pred HhccccCceEEE--EcCCCCE-EEecCC
Confidence 999999999999 9999833 334444
No 158
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.84 E-value=0.00013 Score=46.83 Aligned_cols=50 Identities=26% Similarity=0.497 Sum_probs=35.8
Q ss_pred EcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeee
Q psy8729 53 SAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLIL 131 (190)
Q Consensus 53 ~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l 131 (190)
++++|+.|......++++.+.+. .+++++-+ .+ .+.+ ..||+.++|++++
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~---i~~ei~~~--~~-----------------------~~~~-~~ygv~~vPalvI 55 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG---IEVEIIDI--ED-----------------------FEEI-EKYGVMSVPALVI 55 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT---EEEEEEET--TT-----------------------HHHH-HHTT-SSSSEEEE
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC---CeEEEEEc--cC-----------------------HHHH-HHcCCCCCCEEEE
Confidence 67889999999999988877763 23444432 21 2455 8999999999976
No 159
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.79 E-value=0.00031 Score=53.36 Aligned_cols=86 Identities=22% Similarity=0.346 Sum_probs=53.2
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC---CH-------------HHHHHHHhCCCC---
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR---SE-------------SSYQSYLSGMPW--- 104 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~---~~-------------~~~~~~~~~~~~--- 104 (190)
.++..++.|..+.||+|+++.+.+.+ .. .+..+.++.+.+.. +. +.|+++......
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~-~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP----NA-DGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh----cc-CceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 57889999999999999999999876 12 22345555554432 11 122222222111
Q ss_pred -CcccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729 105 -PAIPYASETRQSLASLYNVHGIPSLILLAVEAGG 138 (190)
Q Consensus 105 -~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g 138 (190)
.......+.+..+++.+|+.++|++++ ++|
T Consensus 151 ~~~~~~~i~~~~~l~~~~gi~gtPtii~----~~G 181 (197)
T cd03020 151 AASCDNPVAANLALGRQLGVNGTPTIVL----ADG 181 (197)
T ss_pred ccccCchHHHHHHHHHHcCCCcccEEEE----CCC
Confidence 011112334678899999999999987 457
No 160
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.76 E-value=9.7e-05 Score=51.50 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=51.4
Q ss_pred CccceeeeeccCCcEEEEEEEcC----CChhhhhhhH--HHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729 33 TVTTKVLSYIESCQVIGLYFSAH----WCPPCKAFTP--QLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA 106 (190)
Q Consensus 33 ~~~~~~~~~~~~~k~vlv~F~a~----wC~~C~~~~~--~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~ 106 (190)
++.+.+....+++|.++|+++++ ||..|+..+. .+.++ +.. ++.+++.++...+
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~---ln~---~fv~w~~dv~~~e-------------- 64 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEY---INT---RMLFWACSVAKPE-------------- 64 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHH---HHc---CEEEEEEecCChH--------------
Confidence 33344444445899999999999 8889977653 44333 322 3555555555333
Q ss_pred ccCCchhHHHHHHHcCCCCCCeeeeeeecC
Q psy8729 107 IPYASETRQSLASLYNVHGIPSLILLAVEA 136 (190)
Q Consensus 107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~ 136 (190)
..+++..+++.++|++.+ ++.
T Consensus 65 -------g~~la~~l~~~~~P~~~~--l~~ 85 (116)
T cd02991 65 -------GYRVSQALRERTYPFLAM--IML 85 (116)
T ss_pred -------HHHHHHHhCCCCCCEEEE--EEe
Confidence 478899999999999999 844
No 161
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.68 E-value=0.00037 Score=55.08 Aligned_cols=90 Identities=21% Similarity=0.270 Sum_probs=52.7
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeC-C-CCHH-------------HHHHHHhCCCCCcc-
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS-D-RSES-------------SYQSYLSGMPWPAI- 107 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~-d-~~~~-------------~~~~~~~~~~~~~~- 107 (190)
.++.+++.|.-+.||+|+++.+++..+.+. ++ ..+.++.+.. . .+.. .+..+...+.....
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~-V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~ 192 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--GK-VQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK 192 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--Cc-eEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence 577889999999999999999998765443 11 2233333221 1 1111 11111111111000
Q ss_pred cC---C------chhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729 108 PY---A------SETRQSLASLYNVHGIPSLILLAVEAGG 138 (190)
Q Consensus 108 ~~---~------~~~~~~~~~~~~v~~~P~~~l~~id~~g 138 (190)
+. . -+.+.++.+.+|+.++|++++ .|.+|
T Consensus 193 ~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~--~d~~G 230 (251)
T PRK11657 193 PPASIPAAVRKQLADNQKLMDDLGANATPAIYY--MDKDG 230 (251)
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEE--ECCCC
Confidence 10 1 122556888999999999999 88888
No 162
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.67 E-value=0.00071 Score=52.89 Aligned_cols=87 Identities=14% Similarity=0.280 Sum_probs=52.3
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC---C-C------------H-HHHHHHHhCCCCCc
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD---R-S------------E-SSYQSYLSGMPWPA 106 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d---~-~------------~-~~~~~~~~~~~~~~ 106 (190)
+++.+++.|..+.||+|++..+++.++.+ .|..+.++..... . . . +.+...........
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~ 181 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP 181 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence 57888999999999999999999876533 3323333322221 1 0 1 11222222221111
Q ss_pred --ccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729 107 --IPYASETRQSLASLYNVHGIPSLILLAVEAGG 138 (190)
Q Consensus 107 --~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g 138 (190)
.....+.+..+++++|+.++|++++ ++|
T Consensus 182 ~~c~~~v~~~~~la~~lgi~gTPtiv~----~~G 211 (232)
T PRK10877 182 ASCDVDIADHYALGVQFGVQGTPAIVL----SNG 211 (232)
T ss_pred ccccchHHHhHHHHHHcCCccccEEEE----cCC
Confidence 1112233678899999999999998 578
No 163
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.60 E-value=0.00086 Score=43.15 Aligned_cols=58 Identities=21% Similarity=0.357 Sum_probs=40.2
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS 128 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 128 (190)
++.|.++|||+|+...+.|.++.- .+..+-++.+.+.+++ ...+.+.+|..++|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~------------------~~~~~~~~g~~~~P~ 56 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSEI------------------QDYLQELTGQRTVPN 56 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHHH------------------HHHHHHHhCCCCCCe
Confidence 467889999999999999976433 2556666665432211 234566678999999
Q ss_pred eee
Q psy8729 129 LIL 131 (190)
Q Consensus 129 ~~l 131 (190)
+++
T Consensus 57 v~~ 59 (82)
T cd03419 57 VFI 59 (82)
T ss_pred EEE
Confidence 866
No 164
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.54 E-value=0.00061 Score=44.69 Aligned_cols=78 Identities=17% Similarity=0.240 Sum_probs=46.6
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEee--CCCC-----HHHHHHHHhCC--C--CCcccCCchhHHHH
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVS--SDRS-----ESSYQSYLSGM--P--WPAIPYASETRQSL 117 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~--~d~~-----~~~~~~~~~~~--~--~~~~~~~~~~~~~~ 117 (190)
+..|+.+.||+|....+.+.++.....+ ++.+.... .... ....+...... + +...... .+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ 75 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEAL--ADTAL 75 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHH--HHHHH
Confidence 4678999999999999999988744433 35555444 3322 11111111110 0 0000000 35677
Q ss_pred HHHcCCCCCCeeee
Q psy8729 118 ASLYNVHGIPSLIL 131 (190)
Q Consensus 118 ~~~~~v~~~P~~~l 131 (190)
...+|+.++|++++
T Consensus 76 ~~~~g~~g~Pt~v~ 89 (98)
T cd02972 76 ARALGVTGTPTFVV 89 (98)
T ss_pred HHHcCCCCCCEEEE
Confidence 88999999999999
No 165
>KOG0911|consensus
Probab=97.48 E-value=6.7e-05 Score=57.34 Aligned_cols=61 Identities=15% Similarity=0.273 Sum_probs=48.9
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
+.+.+++.||++||..|+++...+..+.+.. . +++++.+..+ . ...++..+.+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~---~~~~~k~~a~--~---------------------~~eis~~~~v 68 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-K---NAQFLKLEAE--E---------------------FPEISNLIAV 68 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-h---hheeeeehhh--h---------------------hhHHHHHHHH
Confidence 6788999999999999999999999988887 2 2455444333 2 4688889999
Q ss_pred CCCCeeee
Q psy8729 124 HGIPSLIL 131 (190)
Q Consensus 124 ~~~P~~~l 131 (190)
.+.|++.+
T Consensus 69 ~~vp~~~~ 76 (227)
T KOG0911|consen 69 EAVPYFVF 76 (227)
T ss_pred hcCceeee
Confidence 99998888
No 166
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=97.47 E-value=0.0011 Score=45.49 Aligned_cols=60 Identities=25% Similarity=0.243 Sum_probs=50.7
Q ss_pred ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC
Q psy8729 26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD 89 (190)
Q Consensus 26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d 89 (190)
++++.+.+|....++.+ +|++++|.=-|+.|+.-. ....|++++++|.++| +.|+++-++
T Consensus 3 df~~~~~~G~~v~l~~y-~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g--l~ILaFPcn 62 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKY-KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG--LEILAFPCN 62 (108)
T ss_dssp GSEEEBTTSSEEEGGGG-TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT--EEEEEEEBS
T ss_pred ceeeeCCCCCEECHHHc-CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC--eEEEeeehH
Confidence 46667777767777776 899999999999999888 8889999999999875 999999875
No 167
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.40 E-value=0.00075 Score=41.99 Aligned_cols=55 Identities=24% Similarity=0.363 Sum_probs=35.5
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS 128 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 128 (190)
++.|+++||++|......|.+ .+ +.+..++++.+... ...+.+..++..+|+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~--i~~~~~~i~~~~~~-------------------~~~~~~~~~~~~vP~ 53 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RG--IPFEEVDVDEDPEA-------------------LEELKKLNGYRSVPV 53 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CC--CCeEEEeCCCCHHH-------------------HHHHHHHcCCcccCE
Confidence 567899999999998877754 12 33445555543321 223444457889998
Q ss_pred eee
Q psy8729 129 LIL 131 (190)
Q Consensus 129 ~~l 131 (190)
+++
T Consensus 54 i~~ 56 (73)
T cd02976 54 VVI 56 (73)
T ss_pred EEE
Confidence 876
No 168
>KOG0914|consensus
Probab=97.40 E-value=0.00074 Score=51.56 Aligned_cols=67 Identities=24% Similarity=0.399 Sum_probs=50.0
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
+....+|.||+.|.|.|++..|-+.++..+|...+ +.+=.|++.. -...+.+|+|
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~--lkFGkvDiGr-----------------------fpd~a~kfri 197 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNL--LKFGKVDIGR-----------------------FPDVAAKFRI 197 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCCC--Ccccceeecc-----------------------CcChHHheee
Confidence 56678999999999999999999999999998764 4444444432 1234556655
Q ss_pred ------CCCCeeeeeeecCCC
Q psy8729 124 ------HGIPSLILLAVEAGG 138 (190)
Q Consensus 124 ------~~~P~~~l~~id~~g 138 (190)
..+||+++ + ++|
T Consensus 198 s~s~~srQLPT~il--F-q~g 215 (265)
T KOG0914|consen 198 SLSPGSRQLPTYIL--F-QKG 215 (265)
T ss_pred ccCcccccCCeEEE--E-ccc
Confidence 46899999 7 456
No 169
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.35 E-value=0.0014 Score=42.27 Aligned_cols=55 Identities=24% Similarity=0.466 Sum_probs=37.6
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCC
Q psy8729 48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIP 127 (190)
Q Consensus 48 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P 127 (190)
-|+.|..+||++|++....|.+ .|..+.. ++++.+.. ...+.+..|...+|
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~-------~gi~y~~--idi~~~~~--------------------~~~~~~~~g~~~vP 59 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKE-------KGYDFEE--IPLGNDAR--------------------GRSLRAVTGATTVP 59 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHH-------cCCCcEE--EECCCChH--------------------HHHHHHHHCCCCcC
Confidence 4668899999999999998853 2333444 55554322 23455567889999
Q ss_pred eeee
Q psy8729 128 SLIL 131 (190)
Q Consensus 128 ~~~l 131 (190)
.+++
T Consensus 60 ~i~i 63 (79)
T TIGR02190 60 QVFI 63 (79)
T ss_pred eEEE
Confidence 9877
No 170
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0027 Score=45.95 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=58.1
Q ss_pred ccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCHHHHH
Q psy8729 24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSESSYQ 96 (190)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~~~~~ 96 (190)
.-++++.+.+|....++.+ +|++++|.=.||.|..-. ....|+.|+++|+++| +.|++.-++ .+.++++
T Consensus 5 ~yd~~~~~~~G~~~~l~~~-~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~G--f~VLgFPcNQF~~QEPg~~eEI~ 80 (162)
T COG0386 5 IYDFSVKDIDGEPVSLSDY-KGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKG--FEVLGFPCNQFGGQEPGSDEEIA 80 (162)
T ss_pred cccceeeccCCCCccHHHh-CCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCC--cEEEeccccccccCCCCCHHHHH
Confidence 4556677777777777776 899999999999998766 5568899999999986 999998875 2567788
Q ss_pred HHHh
Q psy8729 97 SYLS 100 (190)
Q Consensus 97 ~~~~ 100 (190)
.|-.
T Consensus 81 ~fC~ 84 (162)
T COG0386 81 KFCQ 84 (162)
T ss_pred HHHH
Confidence 8776
No 171
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.31 E-value=0.001 Score=43.65 Aligned_cols=60 Identities=15% Similarity=0.260 Sum_probs=38.4
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC--CCC
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV--HGI 126 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~ 126 (190)
++.|..+|||+|.+....|.++..++. .+.+..++++.+... ...+.+.+|- ..+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~----~i~~~~idi~~~~~~-------------------~~~l~~~~g~~~~tV 58 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA----DFEFRYIDIHAEGIS-------------------KADLEKTVGKPVETV 58 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC----CCcEEEEECCCCHHH-------------------HHHHHHHhCCCCCCc
Confidence 567889999999999999987654322 234444555432210 2345555563 789
Q ss_pred Ceeee
Q psy8729 127 PSLIL 131 (190)
Q Consensus 127 P~~~l 131 (190)
|.+++
T Consensus 59 P~ifi 63 (86)
T TIGR02183 59 PQIFV 63 (86)
T ss_pred CeEEE
Confidence 99876
No 172
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.27 E-value=0.0014 Score=42.08 Aligned_cols=55 Identities=18% Similarity=0.392 Sum_probs=36.2
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS 128 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 128 (190)
++.|+.+|||+|......|++. |..+..+ +++.+++. ...+.+..|...+|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-------~i~~~~~--di~~~~~~-------------------~~~~~~~~g~~~vP~ 52 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-------GVTFTEI--RVDGDPAL-------------------RDEMMQRSGRRTVPQ 52 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-------CCCcEEE--EecCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 3568899999999999998642 2234444 44433321 244555668889999
Q ss_pred eee
Q psy8729 129 LIL 131 (190)
Q Consensus 129 ~~l 131 (190)
+++
T Consensus 53 i~i 55 (79)
T TIGR02181 53 IFI 55 (79)
T ss_pred EEE
Confidence 876
No 173
>KOG0854|consensus
Probab=97.26 E-value=0.0039 Score=46.10 Aligned_cols=118 Identities=15% Similarity=0.227 Sum_probs=79.1
Q ss_pred CCcccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCC--HHHH--
Q psy8729 21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRS--ESSY-- 95 (190)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~--~~~~-- 95 (190)
+...|+|......|...+.+.+ .+.+.+++-+ +...|-|..++-.+.+++-+|.++ ++++++.|+|+- -+.|
T Consensus 9 gd~~PNfea~Tt~g~i~fhd~~-gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KR--nvKlialS~d~vesH~~Wi~ 85 (224)
T KOG0854|consen 9 GDTVPNFEADTTVGKIKFHDYL-GDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKR--NVKLIALSVDDVESHKDWIK 85 (224)
T ss_pred cCcCCCccccccccceehhhhc-ccceEEEecCcccCCcchhHHHHHHHhhChhhhhc--CceEEEeehhhHHHHHHHHH
Confidence 4456777765555555555554 4555444322 677899999999999999999987 599999999842 2222
Q ss_pred --HHHHhCC-CCCcccCCchhHHHHHHHcCCC--------CCC----eeeeeeecCCCceEEE
Q psy8729 96 --QSYLSGM-PWPAIPYASETRQSLASLYNVH--------GIP----SLILLAVEAGGRLDVI 143 (190)
Q Consensus 96 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~--------~~P----~~~l~~id~~g~~~i~ 143 (190)
+.|.... +-..+|+..|.+.+++-.|++- +.| .+++ ++++.+++..
T Consensus 86 DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfv--i~pdkKirLs 146 (224)
T KOG0854|consen 86 DIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFV--IDPDKKIRLS 146 (224)
T ss_pred HHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEE--ECCCceEEEE
Confidence 2332221 2256788889888888888752 233 5567 9999976543
No 174
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.23 E-value=0.0025 Score=39.32 Aligned_cols=55 Identities=22% Similarity=0.272 Sum_probs=37.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS 128 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 128 (190)
++.|.++|||+|+.....|.+.. +.+..++++.+.+. ...+.+..+...+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~-------------------~~~l~~~~~~~~~P~ 53 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGEL-------------------REELKELSGWPTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 46788999999999999986532 33445555543321 245555667788998
Q ss_pred eee
Q psy8729 129 LIL 131 (190)
Q Consensus 129 ~~l 131 (190)
+++
T Consensus 54 ~~~ 56 (72)
T cd02066 54 IFI 56 (72)
T ss_pred EEE
Confidence 866
No 175
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.23 E-value=0.0023 Score=40.38 Aligned_cols=55 Identities=15% Similarity=0.276 Sum_probs=36.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCC-CCC
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVH-GIP 127 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~P 127 (190)
++.|+.+|||+|......|++ .| +.+-.++++.+.+. ...+.+..|.. .+|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~i~i~~~~~~-------------------~~~~~~~~~~~~~vP 53 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KG--VDYEEIDVDGDPAL-------------------REEMINRSGGRRTVP 53 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CC--CcEEEEECCCCHHH-------------------HHHHHHHhCCCCccC
Confidence 467889999999999888864 22 33444555543321 24455566766 899
Q ss_pred eeee
Q psy8729 128 SLIL 131 (190)
Q Consensus 128 ~~~l 131 (190)
.+++
T Consensus 54 ~v~i 57 (75)
T cd03418 54 QIFI 57 (75)
T ss_pred EEEE
Confidence 8877
No 176
>KOG1651|consensus
Probab=97.19 E-value=0.0047 Score=45.20 Aligned_cols=75 Identities=20% Similarity=0.259 Sum_probs=60.7
Q ss_pred cccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCHHHH
Q psy8729 23 KTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSESSY 95 (190)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~~~~ 95 (190)
...+|+..+.+|+...++.+ +|++++|.=-||.|..-...-..|+.|+++|+++| +.|++.-+. .+.+++
T Consensus 13 siydf~~~d~~G~~v~l~~y-rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G--l~ILaFPCNQFg~QEp~~n~Ei 89 (171)
T KOG1651|consen 13 SIYDFSAKDLDGEYVSLSQY-RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG--LEILAFPCNQFGNQEPGSNEEI 89 (171)
T ss_pred ceeeeEEecCCCCCccHHHh-CCeEEEEEEcccccccchhcchhHHHHHHHHhhCC--eEEEEeccccccCcCCCCcHHH
Confidence 34667777877766666665 89999998899999998878889999999999986 999998874 245777
Q ss_pred HHHHh
Q psy8729 96 QSYLS 100 (190)
Q Consensus 96 ~~~~~ 100 (190)
..++.
T Consensus 90 ~~f~~ 94 (171)
T KOG1651|consen 90 LNFVK 94 (171)
T ss_pred HHHHH
Confidence 78876
No 177
>PHA03050 glutaredoxin; Provisional
Probab=97.18 E-value=0.0019 Score=44.36 Aligned_cols=61 Identities=18% Similarity=0.264 Sum_probs=38.1
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS 128 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 128 (190)
|+.|..+|||+|++....|.+..-.. ..+.++-|.-..+..+ ....+.+..|...+|.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~----~~~~~i~i~~~~~~~~------------------~~~~l~~~tG~~tVP~ 72 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR----GAYEIVDIKEFKPENE------------------LRDYFEQITGGRTVPR 72 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc----CCcEEEECCCCCCCHH------------------HHHHHHHHcCCCCcCE
Confidence 56789999999999998886532111 1344544442111111 1345666678889999
Q ss_pred eee
Q psy8729 129 LIL 131 (190)
Q Consensus 129 ~~l 131 (190)
+++
T Consensus 73 IfI 75 (108)
T PHA03050 73 IFF 75 (108)
T ss_pred EEE
Confidence 977
No 178
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.15 E-value=0.0044 Score=41.86 Aligned_cols=58 Identities=17% Similarity=0.337 Sum_probs=35.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS 128 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 128 (190)
++.|..+|||+|++....|.+. |..+.. +.+|.+++. . +....+.+..|...+|.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-------~i~~~~--vdid~~~~~-~---------------~~~~~l~~~tg~~tvP~ 64 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-------GVNPAV--HEIDKEPAG-K---------------DIENALSRLGCSPAVPA 64 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCCEE--EEcCCCccH-H---------------HHHHHHHHhcCCCCcCe
Confidence 5678899999999998877542 223444 444432210 0 01234455557889999
Q ss_pred eee
Q psy8729 129 LIL 131 (190)
Q Consensus 129 ~~l 131 (190)
+++
T Consensus 65 Vfi 67 (99)
T TIGR02189 65 VFV 67 (99)
T ss_pred EEE
Confidence 877
No 179
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.11 E-value=0.0036 Score=39.51 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=37.6
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS 128 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 128 (190)
++.|..+|||+|++....|++ .| +.+-.++++.+.+. ...+.+..+-..+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~g--i~~~~~di~~~~~~-------------------~~el~~~~g~~~vP~ 54 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KG--LPYVEINIDIFPER-------------------KAELEERTGSSVVPQ 54 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CC--CceEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 456788999999999998864 22 33444555543321 345666677788999
Q ss_pred eee
Q psy8729 129 LIL 131 (190)
Q Consensus 129 ~~l 131 (190)
+++
T Consensus 55 v~i 57 (73)
T cd03027 55 IFF 57 (73)
T ss_pred EEE
Confidence 877
No 180
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.04 E-value=0.0054 Score=38.57 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=35.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS 128 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 128 (190)
++.|..+|||+|.+....|++ .| +.+..++++.+.+ ...+.+..|...+|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~--i~~~~~~v~~~~~--------------------~~~~~~~~g~~~vP~ 53 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NG--ISYEEIPLGKDIT--------------------GRSLRAVTGAMTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cC--CCcEEEECCCChh--------------------HHHHHHHhCCCCcCe
Confidence 567889999999999888863 22 3334445443321 234455568889999
Q ss_pred eee
Q psy8729 129 LIL 131 (190)
Q Consensus 129 ~~l 131 (190)
+++
T Consensus 54 ifi 56 (72)
T cd03029 54 VFI 56 (72)
T ss_pred EEE
Confidence 866
No 181
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.04 E-value=0.0025 Score=45.30 Aligned_cols=55 Identities=13% Similarity=0.347 Sum_probs=44.5
Q ss_pred CChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeec
Q psy8729 56 WCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVE 135 (190)
Q Consensus 56 wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id 135 (190)
.+|.+....-.|.+++++|.+. ++.+..|++|. +..++.+|||.++||+++ +
T Consensus 47 r~~E~~D~avvleELa~e~~~~--~v~~akVDiD~-----------------------~~~LA~~fgV~siPTLl~--F- 98 (132)
T PRK11509 47 RTPEVSDNPVMIGELLREFPDY--TWQVAIADLEQ-----------------------SEAIGDRFGVFRFPATLV--F- 98 (132)
T ss_pred cCCccccHHHHHHHHHHHhcCC--ceEEEEEECCC-----------------------CHHHHHHcCCccCCEEEE--E-
Confidence 4577778888888899998632 47888888875 468999999999999999 7
Q ss_pred CCC
Q psy8729 136 AGG 138 (190)
Q Consensus 136 ~~g 138 (190)
++|
T Consensus 99 kdG 101 (132)
T PRK11509 99 TGG 101 (132)
T ss_pred ECC
Confidence 577
No 182
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.94 E-value=0.002 Score=46.17 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=27.9
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHH
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKL 74 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~ 74 (190)
.++++++.|+.++||+|+.+.+.+.++..++
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 5788999999999999999999999887665
No 183
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.86 E-value=0.0045 Score=54.40 Aligned_cols=61 Identities=11% Similarity=0.123 Sum_probs=45.7
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
.++..+-.|.+++||+|......+++++...+ ++..-.|.... .+++..+|+|
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~----~i~~~~i~~~~-----------------------~~~~~~~~~v 527 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP----NVEAEMIDVSH-----------------------FPDLKDEYGI 527 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC----CceEEEEECcc-----------------------cHHHHHhCCc
Confidence 34444566789999999999999988877753 34544454432 3678889999
Q ss_pred CCCCeeee
Q psy8729 124 HGIPSLIL 131 (190)
Q Consensus 124 ~~~P~~~l 131 (190)
.++|++++
T Consensus 528 ~~vP~~~i 535 (555)
T TIGR03143 528 MSVPAIVV 535 (555)
T ss_pred eecCEEEE
Confidence 99999998
No 184
>PRK10638 glutaredoxin 3; Provisional
Probab=96.76 E-value=0.0093 Score=38.67 Aligned_cols=55 Identities=16% Similarity=0.352 Sum_probs=35.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS 128 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 128 (190)
++.|..+|||+|++....|++. |..+.. ++++.+.+. ...+.+..|...+|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-------gi~y~~--~dv~~~~~~-------------------~~~l~~~~g~~~vP~ 55 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-------GVSFQE--IPIDGDAAK-------------------REEMIKRSGRTTVPQ 55 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCCcEE--EECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 4567789999999999988642 223444 455543311 244556668889998
Q ss_pred eee
Q psy8729 129 LIL 131 (190)
Q Consensus 129 ~~l 131 (190)
+++
T Consensus 56 i~~ 58 (83)
T PRK10638 56 IFI 58 (83)
T ss_pred EEE
Confidence 866
No 185
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.63 E-value=0.013 Score=38.01 Aligned_cols=54 Identities=17% Similarity=0.330 Sum_probs=34.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS 128 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 128 (190)
+..|..+|||+|......|.+ .| +.+-.++++.+++. ....+..|...+|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~g--I~~~~idi~~~~~~--------------------~~~~~~~g~~~vPv 53 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RG--FDFEMINVDRVPEA--------------------AETLRAQGFRQLPV 53 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CC--CceEEEECCCCHHH--------------------HHHHHHcCCCCcCE
Confidence 567889999999998888843 34 44444555544321 12223358889998
Q ss_pred eee
Q psy8729 129 LIL 131 (190)
Q Consensus 129 ~~l 131 (190)
+++
T Consensus 54 v~i 56 (81)
T PRK10329 54 VIA 56 (81)
T ss_pred EEE
Confidence 866
No 186
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=96.60 E-value=0.0094 Score=45.50 Aligned_cols=101 Identities=16% Similarity=0.291 Sum_probs=74.0
Q ss_pred eeccCCCccceeeeeccCCcEEEEEEE------cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHh
Q psy8729 27 IGLAEGTVTTKVLSYIESCQVIGLYFS------AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS 100 (190)
Q Consensus 27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~------a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~ 100 (190)
+.+.+..|...+.+.+...+.++|+.+ ..-|+.|.-....++.....+..+ ++.++.|+-. -.+.+..|.+
T Consensus 49 Y~F~g~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~r--d~tfa~vSra-P~~~i~afk~ 125 (211)
T PF05988_consen 49 YVFDGPDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHAR--DTTFAVVSRA-PLEKIEAFKR 125 (211)
T ss_pred eEEeCCCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhC--CceEEEEeCC-CHHHHHHHHH
Confidence 555666677777777754444555543 356999999999997777777765 5788888754 5678999999
Q ss_pred CCCCCcccCCchhHHHHHHHcCC-----CCCCeeee
Q psy8729 101 GMPWPAIPYASETRQSLASLYNV-----HGIPSLIL 131 (190)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~v-----~~~P~~~l 131 (190)
.+||. +|..+.....+...|++ ...|.+-+
T Consensus 126 rmGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~sv 160 (211)
T PF05988_consen 126 RMGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSV 160 (211)
T ss_pred hcCCC-ceEEEcCCCcccccccceeccCCCceeEEE
Confidence 99997 77777667778888887 45676655
No 187
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.59 E-value=0.011 Score=37.13 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=33.9
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCee
Q psy8729 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSL 129 (190)
Q Consensus 50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~ 129 (190)
..|..++||+|+.....|++ .| +.+-.++++.+.+. ... .+..|...+|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~~di~~~~~~-------------------~~~-~~~~g~~~vP~v 52 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HG--IAFEEINIDEQPEA-------------------IDY-VKAQGFRQVPVI 52 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CC--CceEEEECCCCHHH-------------------HHH-HHHcCCcccCEE
Confidence 46788999999999998863 23 33444555543321 122 234588889987
Q ss_pred ee
Q psy8729 130 IL 131 (190)
Q Consensus 130 ~l 131 (190)
++
T Consensus 53 ~~ 54 (72)
T TIGR02194 53 VA 54 (72)
T ss_pred EE
Confidence 66
No 188
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.59 E-value=0.0045 Score=49.33 Aligned_cols=64 Identities=14% Similarity=0.261 Sum_probs=47.7
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
++.+|||.||-+.++.|..+-..|..|+++|+. ++++-|..... .+...|..
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~------------------------~~~~~f~~ 196 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKC------------------------PASENFPD 196 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGC------------------------CTTTTS-T
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhcc------------------------CcccCCcc
Confidence 466899999999999999999999999999964 67777765421 13557889
Q ss_pred CCCCeeeeeeecCCC
Q psy8729 124 HGIPSLILLAVEAGG 138 (190)
Q Consensus 124 ~~~P~~~l~~id~~g 138 (190)
..+|++++ + ++|
T Consensus 197 ~~LPtllv--Y-k~G 208 (265)
T PF02114_consen 197 KNLPTLLV--Y-KNG 208 (265)
T ss_dssp TC-SEEEE--E-ETT
T ss_pred cCCCEEEE--E-ECC
Confidence 99999999 6 477
No 189
>KOG1752|consensus
Probab=96.54 E-value=0.021 Score=38.95 Aligned_cols=58 Identities=24% Similarity=0.442 Sum_probs=35.3
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS 128 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 128 (190)
+|.|..+||++|......|.. + +....++-+.-+.+-.+++ ..+.+.-|...+|.
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~---~v~~~vvELD~~~~g~eiq------------------~~l~~~tg~~tvP~ 70 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----L---GVNPKVVELDEDEDGSEIQ------------------KALKKLTGQRTVPN 70 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----C---CCCCEEEEccCCCCcHHHH------------------HHHHHhcCCCCCCE
Confidence 467889999999995555543 2 3345565554443332333 33344446678999
Q ss_pred eee
Q psy8729 129 LIL 131 (190)
Q Consensus 129 ~~l 131 (190)
+|+
T Consensus 71 vFI 73 (104)
T KOG1752|consen 71 VFI 73 (104)
T ss_pred EEE
Confidence 888
No 190
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.016 Score=37.48 Aligned_cols=57 Identities=19% Similarity=0.321 Sum_probs=36.1
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS 128 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 128 (190)
++.|..++||+|+.....|. ..|..++.+-+..+.. ++.+ ..+.+..|...+|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~-~~~~------------------~~~~~~~g~~tvP~ 56 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEP-EEAR------------------EMVKRGKGQRTVPQ 56 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcH-HHHH------------------HHHHHhCCCCCcCE
Confidence 46678899999999988886 3344455555544431 1111 22233338899999
Q ss_pred eee
Q psy8729 129 LIL 131 (190)
Q Consensus 129 ~~l 131 (190)
+++
T Consensus 57 I~i 59 (80)
T COG0695 57 IFI 59 (80)
T ss_pred EEE
Confidence 888
No 191
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.52 E-value=0.017 Score=38.11 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=31.3
Q ss_pred CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeee
Q psy8729 55 HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLIL 131 (190)
Q Consensus 55 ~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l 131 (190)
+|||+|++....|.+. |..+.. ++++.+.+ ....+.+..|...+|.+++
T Consensus 21 ~~Cp~C~~ak~~L~~~-------~i~y~~--idv~~~~~-------------------~~~~l~~~~g~~tvP~vfi 69 (90)
T cd03028 21 PRCGFSRKVVQILNQL-------GVDFGT--FDILEDEE-------------------VRQGLKEYSNWPTFPQLYV 69 (90)
T ss_pred CCCcHHHHHHHHHHHc-------CCCeEE--EEcCCCHH-------------------HHHHHHHHhCCCCCCEEEE
Confidence 6999999998888653 223344 44443321 1345566668889999866
No 192
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.51 E-value=0.011 Score=42.91 Aligned_cols=44 Identities=20% Similarity=0.445 Sum_probs=35.9
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS 88 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~ 88 (190)
.++++|+.|+...||+|..+.+.+.++.+++-+.| ++.++...+
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEc
Confidence 68899999999999999999999999999983332 577777765
No 193
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.48 E-value=0.018 Score=38.68 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=32.1
Q ss_pred CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeee
Q psy8729 55 HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLIL 131 (190)
Q Consensus 55 ~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l 131 (190)
+|||+|.+....|.+. | +.+..++++.+.+ . ...+.+..|...+|.+++
T Consensus 25 ~~Cp~C~~ak~lL~~~-------~--i~~~~~di~~~~~-~------------------~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 25 PQCGFSARAVQILKAC-------G--VPFAYVNVLEDPE-I------------------RQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred CCCchHHHHHHHHHHc-------C--CCEEEEECCCCHH-H------------------HHHHHHHhCCCCCCEEEE
Confidence 8999999999888652 2 2233455543332 1 345555668889999887
No 194
>KOG0913|consensus
Probab=96.45 E-value=0.00053 Score=52.82 Aligned_cols=67 Identities=21% Similarity=0.439 Sum_probs=48.6
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
.|. .++.|+++|||.|+...|.+..++.--.+ .++++-.|.+.. +..+.-+|=+
T Consensus 39 ~ge-wmi~~~ap~~psc~~~~~~~~~~a~~s~d--L~v~va~VDvt~-----------------------npgLsGRF~v 92 (248)
T KOG0913|consen 39 TGE-WMIEFGAPWCPSCSDLIPHLENFATVSLD--LGVKVAKVDVTT-----------------------NPGLSGRFLV 92 (248)
T ss_pred chH-HHHHhcCCCCccccchHHHHhccCCccCC--CceeEEEEEEEe-----------------------ccccceeeEE
Confidence 455 46899999999999999999877654333 345555554432 3566778889
Q ss_pred CCCCeeeeeeecCCCc
Q psy8729 124 HGIPSLILLAVEAGGR 139 (190)
Q Consensus 124 ~~~P~~~l~~id~~g~ 139 (190)
.+.|++|= + ++|-
T Consensus 93 taLptIYH--v-kDGe 105 (248)
T KOG0913|consen 93 TALPTIYH--V-KDGE 105 (248)
T ss_pred EecceEEE--e-eccc
Confidence 99999997 6 6783
No 195
>KOG3414|consensus
Probab=96.37 E-value=0.044 Score=38.38 Aligned_cols=63 Identities=16% Similarity=0.372 Sum_probs=51.8
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
..+.+||-|.-.|-|.|.++-..|.++.++..+- ..+..+.+|+ -+.+.+.|++
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~Iylvdide-----------------------V~~~~~~~~l 75 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDE-----------------------VPDFVKMYEL 75 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecch-----------------------hhhhhhhhcc
Confidence 6889999999999999999999999999998764 4455555553 3677889999
Q ss_pred CCCCeeeee
Q psy8729 124 HGIPSLILL 132 (190)
Q Consensus 124 ~~~P~~~l~ 132 (190)
...|++.+|
T Consensus 76 ~~p~tvmfF 84 (142)
T KOG3414|consen 76 YDPPTVMFF 84 (142)
T ss_pred cCCceEEEE
Confidence 999988773
No 196
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.34 E-value=0.013 Score=51.04 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=46.4
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
.+..-+..|.+++||+|......+++++... +++..-.| |... .+++...|++
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~----~~i~~~~i--d~~~---------------------~~~~~~~~~v 167 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLN----PNITHTMI--DGAL---------------------FQDEVEARNI 167 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC----CCceEEEE--Echh---------------------CHhHHHhcCC
Confidence 3555688899999999999999998887753 23555444 3322 4788899999
Q ss_pred CCCCeeee
Q psy8729 124 HGIPSLIL 131 (190)
Q Consensus 124 ~~~P~~~l 131 (190)
.++|++++
T Consensus 168 ~~VP~~~i 175 (517)
T PRK15317 168 MAVPTVFL 175 (517)
T ss_pred cccCEEEE
Confidence 99999987
No 197
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.24 E-value=0.059 Score=36.72 Aligned_cols=76 Identities=12% Similarity=0.277 Sum_probs=50.7
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
..++++|+=.++.||-+......+++......++ +.+..+.+-... +..+.+++.|||
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~~R-------------------~vSn~IAe~~~V 75 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIEYR-------------------PVSNAIAEDFGV 75 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGH-------------------HHHHHHHHHHT-
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEeCc-------------------hhHHHHHHHhCC
Confidence 5778888888999999999999999888876543 667777765333 126789999998
Q ss_pred C-CCCeeeeeeecCCCceEEEccc
Q psy8729 124 H-GIPSLILLAVEAGGRLDVITTE 146 (190)
Q Consensus 124 ~-~~P~~~l~~id~~g~~~i~~~~ 146 (190)
. .-|.+++ + ++| +++...
T Consensus 76 ~HeSPQ~il--i-~~g--~~v~~a 94 (105)
T PF11009_consen 76 KHESPQVIL--I-KNG--KVVWHA 94 (105)
T ss_dssp ---SSEEEE--E-ETT--EEEEEE
T ss_pred CcCCCcEEE--E-ECC--EEEEEC
Confidence 6 7899999 8 578 555443
No 198
>KOG2603|consensus
Probab=96.08 E-value=0.071 Score=43.02 Aligned_cols=89 Identities=15% Similarity=0.192 Sum_probs=63.6
Q ss_pred ccceeccCCCccceeeeeccCCcEEEEEEEcC----CChhhhhhhHHHHHHHHHHhhcCC---cEEEEEeeCCCCHHHHH
Q psy8729 24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFSAH----WCPPCKAFTPQLIETYRKLKEDGY---QFEIIFVSSDRSESSYQ 96 (190)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~----wC~~C~~~~~~l~~l~~~~~~~g~---~~~ii~i~~d~~~~~~~ 96 (190)
...+++++.++...+. .-.++.-++|.|.|. .|+-|+....+++-+++.+...++ .-++.+..+|-++
T Consensus 40 ~~VI~~n~d~~~~~v~-~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e---- 114 (331)
T KOG2603|consen 40 SGVIRMNDDKFSKFVR-PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE---- 114 (331)
T ss_pred CCeEEecCcchhhhcc-CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc----
Confidence 3457788888765555 333666678888874 599999999999999888775532 2334444444333
Q ss_pred HHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecC
Q psy8729 97 SYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEA 136 (190)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~ 136 (190)
.+++.+++++.+.|++++ +.+
T Consensus 115 -----------------~p~~Fq~l~ln~~P~l~~--f~P 135 (331)
T KOG2603|consen 115 -----------------SPQVFQQLNLNNVPHLVL--FSP 135 (331)
T ss_pred -----------------cHHHHHHhcccCCCeEEE--eCC
Confidence 468899999999999999 655
No 199
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.05 E-value=0.014 Score=43.09 Aligned_cols=34 Identities=32% Similarity=0.439 Sum_probs=30.3
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhc
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKED 77 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~ 77 (190)
.++++++.|+...||+|+.+.+.+..+.++++++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~ 47 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD 47 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC
Confidence 6788999999999999999999999998887543
No 200
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=95.79 E-value=0.12 Score=40.12 Aligned_cols=94 Identities=19% Similarity=0.220 Sum_probs=64.7
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCC-cEEEEEeeCCCCHHHHH-HHHhCCCCCcccCCc--hhHHHHHH
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGY-QFEIIFVSSDRSESSYQ-SYLSGMPWPAIPYAS--ETRQSLAS 119 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~-~~~ii~i~~d~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~ 119 (190)
.|+++||.+-..+|..|..-+..|..|..++..+|. ++.++.|+-......+. ..++..--..+|+.. .....+=.
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipVyqq~~~q~dvW~ 104 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHIPVYQQDENQPDVWE 104 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCCceecCCccccCHHH
Confidence 799999999999999999999999999999998874 88888888654433332 233333222355542 22445555
Q ss_pred HcCCCCCCeeeeeeecCCCce
Q psy8729 120 LYNVHGIPSLILLAVEAGGRL 140 (190)
Q Consensus 120 ~~~v~~~P~~~l~~id~~g~~ 140 (190)
.++-..- .+++ +|+=||+
T Consensus 105 ~L~G~kd-D~~i--yDRCGrL 122 (238)
T PF04592_consen 105 LLNGSKD-DFLI--YDRCGRL 122 (238)
T ss_pred HhCCCcC-cEEE--EeccCcE
Confidence 5554432 4777 8999954
No 201
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.75 E-value=0.037 Score=48.25 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=45.6
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
.++.-+-.|.++.||+|......+++++...+ ++..-.| |... .+++..+|++
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p----~i~~~~i--d~~~---------------------~~~~~~~~~v 168 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNP----NISHTMI--DGAL---------------------FQDEVEALGI 168 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC----CceEEEE--Echh---------------------CHHHHHhcCC
Confidence 45556888999999999999999988877643 3444333 3322 4678899999
Q ss_pred CCCCeeee
Q psy8729 124 HGIPSLIL 131 (190)
Q Consensus 124 ~~~P~~~l 131 (190)
.++|++++
T Consensus 169 ~~VP~~~i 176 (515)
T TIGR03140 169 QGVPAVFL 176 (515)
T ss_pred cccCEEEE
Confidence 99999987
No 202
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.03 Score=49.65 Aligned_cols=82 Identities=20% Similarity=0.208 Sum_probs=53.6
Q ss_pred ceeeeeccCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCch
Q psy8729 36 TKVLSYIESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASE 112 (190)
Q Consensus 36 ~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~ 112 (190)
+.+.....++|+++|....+||.-|..+..+- .++++-+++. +|.|.+|.++ .|....
T Consensus 34 eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~-----FV~IKVDREE--------------RPDvD~ 94 (667)
T COG1331 34 EAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN-----FVPVKVDREE--------------RPDVDS 94 (667)
T ss_pred HHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC-----ceeeeEChhh--------------ccCHHH
Confidence 33333445899999999999999999987633 3344445443 7778888543 111111
Q ss_pred hHHHHHHHc-CCCCCCeeeeeeecCCC
Q psy8729 113 TRQSLASLY-NVHGIPSLILLAVEAGG 138 (190)
Q Consensus 113 ~~~~~~~~~-~v~~~P~~~l~~id~~g 138 (190)
.-..+++.. |-.+.|-+++ +-++|
T Consensus 95 ~Ym~~~q~~tG~GGWPLtVf--LTPd~ 119 (667)
T COG1331 95 LYMNASQAITGQGGWPLTVF--LTPDG 119 (667)
T ss_pred HHHHHHHHhccCCCCceeEE--ECCCC
Confidence 123444443 5678999999 99999
No 203
>PRK10824 glutaredoxin-4; Provisional
Probab=95.27 E-value=0.11 Score=36.07 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=31.1
Q ss_pred CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeee
Q psy8729 55 HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLIL 131 (190)
Q Consensus 55 ~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l 131 (190)
||||+|++....|+.+. .++.. +.++.+.+ . ...+.+.-|-..+|.+|+
T Consensus 28 p~Cpyc~~ak~lL~~~~-------i~~~~--idi~~d~~-~------------------~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 28 PSCGFSAQAVQALSACG-------ERFAY--VDILQNPD-I------------------RAELPKYANWPTFPQLWV 76 (115)
T ss_pred CCCchHHHHHHHHHHcC-------CCceE--EEecCCHH-H------------------HHHHHHHhCCCCCCeEEE
Confidence 59999999998886542 22334 34443332 1 234444457888999998
No 204
>PTZ00062 glutaredoxin; Provisional
Probab=95.17 E-value=0.11 Score=39.76 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=37.3
Q ss_pred eeccCCcEEEEEE---EcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHH
Q psy8729 40 SYIESCQVIGLYF---SAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQS 116 (190)
Q Consensus 40 ~~~~~~k~vlv~F---~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (190)
..+.++++++..= ++|||++|++....|++. | +.+..++++.+++ + ...
T Consensus 108 ~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-------~--i~y~~~DI~~d~~-~------------------~~~ 159 (204)
T PTZ00062 108 RLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS-------G--VKYETYNIFEDPD-L------------------REE 159 (204)
T ss_pred HHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc-------C--CCEEEEEcCCCHH-H------------------HHH
Confidence 3443454433333 337999999988888642 2 2333455554332 1 244
Q ss_pred HHHHcCCCCCCeeee
Q psy8729 117 LASLYNVHGIPSLIL 131 (190)
Q Consensus 117 ~~~~~~v~~~P~~~l 131 (190)
+.+..|...+|.+++
T Consensus 160 l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 160 LKVYSNWPTYPQLYV 174 (204)
T ss_pred HHHHhCCCCCCeEEE
Confidence 455557788999998
No 205
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=94.94 E-value=0.1 Score=44.27 Aligned_cols=63 Identities=13% Similarity=0.268 Sum_probs=36.6
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS 128 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 128 (190)
|+.|..+|||+|++....|.+ .|..++. ++++.+++ ...+.++.+ ...+.+..|...+|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~gi~~~~--idi~~~~~-~~~~~~~~~----------~~~~~~~~g~~tvP~ 63 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------NDIPFTQ--ISLDDDVK-RAEFYAEVN----------KNILLVEEHIRTVPQ 63 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCeEE--EECCCChh-HHHHHHHHh----------hccccccCCCCccCe
Confidence 667899999999999888854 2334554 45553332 111211110 001233467888998
Q ss_pred eee
Q psy8729 129 LIL 131 (190)
Q Consensus 129 ~~l 131 (190)
+++
T Consensus 64 ifi 66 (410)
T PRK12759 64 IFV 66 (410)
T ss_pred EEE
Confidence 877
No 206
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=94.90 E-value=0.34 Score=34.30 Aligned_cols=61 Identities=21% Similarity=0.387 Sum_probs=48.1
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
..|+++|-|...|-|.|.++-..|.+.+++.+.- ..+..+..+. -+.+.+.|.+
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~-----------------------Vpdfn~~yel 72 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDE-----------------------VPDFNQMYEL 72 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTT-----------------------THCCHHHTTS
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEccc-----------------------chhhhccccc
Confidence 6899999999999999999999999999988764 6677777764 2456788998
Q ss_pred CCCCeeee
Q psy8729 124 HGIPSLIL 131 (190)
Q Consensus 124 ~~~P~~~l 131 (190)
. .|..++
T Consensus 73 ~-dP~tvm 79 (133)
T PF02966_consen 73 Y-DPCTVM 79 (133)
T ss_dssp --SSEEEE
T ss_pred C-CCeEEE
Confidence 8 776555
No 207
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.12 Score=32.82 Aligned_cols=69 Identities=20% Similarity=0.335 Sum_probs=44.7
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCee
Q psy8729 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSL 129 (190)
Q Consensus 50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~ 129 (190)
+.|++..||.|.....+|.++.- ++.. |.+-.+.+-+++|++-..- .| .-.-.+..|--++|.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v-------~yd~--VeIt~Sm~NlKrFl~lRDs--~~-----~Fd~vk~~gyiGIPal 68 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNV-------DYDF--VEITESMANLKRFLHLRDS--RP-----EFDEVKSNGYIGIPAL 68 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCC-------Ccee--eehhhhhhhHHHHHhhhcc--ch-----hHHhhhhcCcccceEE
Confidence 57899999999988888865322 2334 4445566778888874421 00 1122456788889998
Q ss_pred eeeeecCCC
Q psy8729 130 ILLAVEAGG 138 (190)
Q Consensus 130 ~l~~id~~g 138 (190)
.+ .+|
T Consensus 69 l~----~d~ 73 (85)
T COG4545 69 LT----DDG 73 (85)
T ss_pred Ee----CCC
Confidence 88 567
No 208
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=94.14 E-value=0.057 Score=41.29 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=28.0
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhc
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKED 77 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~ 77 (190)
.+++.||.|+...||+|..+.+.+ ..+.+.+++.
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~ 72 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG 72 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC
Confidence 467889999999999999999866 6777777643
No 209
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.06 E-value=0.13 Score=39.49 Aligned_cols=94 Identities=16% Similarity=0.306 Sum_probs=65.8
Q ss_pred ceeccCCCccceeeeeccCCcEEEEE-E-EcC----CChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729 26 NIGLAEGTVTTKVLSYIESCQVIGLY-F-SAH----WCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL 99 (190)
Q Consensus 26 ~~~l~~~~~~~~~~~~~~~~k~vlv~-F-~a~----wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~ 99 (190)
++.+...+|...+.+.+....-++|+ | ++| -|+.|.-.+..+......+... ++.+++|+-- -.+++..|-
T Consensus 54 ~Y~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~--dv~lv~VsRA-Pl~~l~~~k 130 (247)
T COG4312 54 DYVFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHH--DVTLVAVSRA-PLEELVAYK 130 (247)
T ss_pred eeEeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhc--CceEEEEecC-cHHHHHHHH
Confidence 34445556666666666433344444 2 244 5999999999997777776654 5888888754 467889999
Q ss_pred hCCCCCcccCCchhHHHHHHHcCC
Q psy8729 100 SGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
+.+||. ++........+...|++
T Consensus 131 ~rmGW~-f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 131 RRMGWQ-FPWVSSTDSDFNRDFQV 153 (247)
T ss_pred HhcCCc-ceeEeccCccccccccc
Confidence 999997 77776666777777765
No 210
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=93.73 E-value=0.34 Score=38.38 Aligned_cols=121 Identities=7% Similarity=-0.017 Sum_probs=61.5
Q ss_pred cccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhc-CCcEEEEEeeCCCCH--HHHHHH
Q psy8729 23 KTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKED-GYQFEIIFVSSDRSE--SSYQSY 98 (190)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~-g~~~~ii~i~~d~~~--~~~~~~ 98 (190)
..|++.-....++.......-.|++.||..+ ..|-..|...-- ....++|... +..++++-|++.++. .-+..+
T Consensus 100 yFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~--~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~~~ 177 (252)
T PF05176_consen 100 YFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWT--SPFLEDFLQEPYGRVQIVEINLIENWLKSWLVKL 177 (252)
T ss_pred cCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHh--hHHHHHHhhCCCCceEEEEEecchHHHHHHHHHH
Confidence 3455554444443333333337888777655 444433322211 1233444433 126999999986543 112222
Q ss_pred Hh-CC-------CCCcccCCch--hHHHHHHHcCCCC--CCeeeeeeecCCCceEEEcccc
Q psy8729 99 LS-GM-------PWPAIPYASE--TRQSLASLYNVHG--IPSLILLAVEAGGRLDVITTEA 147 (190)
Q Consensus 99 ~~-~~-------~~~~~~~~~~--~~~~~~~~~~v~~--~P~~~l~~id~~g~~~i~~~~~ 147 (190)
+. .+ .+..+-+..+ ....+.+.+|+.. +..+|+ +|.+|||+..+.+.
T Consensus 178 ~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyL--VD~~grIRWagsG~ 236 (252)
T PF05176_consen 178 FMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYL--VDPNGRIRWAGSGP 236 (252)
T ss_pred HhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEE--ECCCCeEEeCccCC
Confidence 21 11 1222212222 2568899999875 455666 99999665555443
No 211
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=93.44 E-value=0.68 Score=28.61 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=33.5
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeee
Q psy8729 51 YFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLI 130 (190)
Q Consensus 51 ~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~ 130 (190)
.|+.+||+.|++..-.|.. .|..++++.++.... ...+.+......+|++.
T Consensus 3 ly~~~~~p~~~rv~~~L~~-------~gl~~e~~~v~~~~~----------------------~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 3 LYSFRRCPYAMRARMALLL-------AGITVELREVELKNK----------------------PAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEecCCCcHHHHHHHHHHH-------cCCCcEEEEeCCCCC----------------------CHHHHHHCCCCCCCEEE
Confidence 5678999999998777743 234566766654321 13455555667888775
Q ss_pred e
Q psy8729 131 L 131 (190)
Q Consensus 131 l 131 (190)
.
T Consensus 54 ~ 54 (71)
T cd03060 54 L 54 (71)
T ss_pred E
Confidence 5
No 212
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=0.27 Score=35.64 Aligned_cols=81 Identities=16% Similarity=0.300 Sum_probs=57.4
Q ss_pred eeccCCcEEEEEEE--cCCChhhhh-hhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCC-cccCCchhHH
Q psy8729 40 SYIESCQVIGLYFS--AHWCPPCKA-FTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP-AIPYASETRQ 115 (190)
Q Consensus 40 ~~~~~~k~vlv~F~--a~wC~~C~~-~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~ 115 (190)
+++.++|.+ |.|. +...|.|.. .+|...+++.++..+|.+ +|+.|+++ +..-+..|.+..+-. .+.+..|.+.
T Consensus 32 ~~lf~gKkV-vlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD-~I~cVSVN-D~FVm~AWak~~g~~~~I~fi~Dg~g 108 (165)
T COG0678 32 DDLFKGKKV-VLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVD-EIYCVSVN-DAFVMNAWAKSQGGEGNIKFIPDGNG 108 (165)
T ss_pred HHhcCCCEE-EEEeCCCccCCCcccccCccHHHHHHHHHHcCCc-eEEEEEeC-cHHHHHHHHHhcCCCccEEEecCCCc
Confidence 333456644 3344 455677776 899999999999988622 35566666 566777888877655 6777888889
Q ss_pred HHHHHcCC
Q psy8729 116 SLASLYNV 123 (190)
Q Consensus 116 ~~~~~~~v 123 (190)
++.+.+|.
T Consensus 109 eFTk~~Gm 116 (165)
T COG0678 109 EFTKAMGM 116 (165)
T ss_pred hhhhhcCc
Confidence 99998875
No 213
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=92.41 E-value=0.74 Score=33.81 Aligned_cols=67 Identities=18% Similarity=0.392 Sum_probs=49.8
Q ss_pred CCcE-EEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729 44 SCQV-IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN 122 (190)
Q Consensus 44 ~~k~-vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (190)
.+++ +++.|..............++.++++++++ +.++.+..+. ...+.+.||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~---~~f~~~d~~~-----------------------~~~~~~~~~ 146 (184)
T PF13848_consen 93 SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK---INFVYVDADD-----------------------FPRLLKYFG 146 (184)
T ss_dssp TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT---SEEEEEETTT-----------------------THHHHHHTT
T ss_pred CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe---EEEEEeehHH-----------------------hHHHHHHcC
Confidence 4545 666676666778888888899999888765 6677776653 246788999
Q ss_pred CC--CCCeeeeeeecCCC
Q psy8729 123 VH--GIPSLILLAVEAGG 138 (190)
Q Consensus 123 v~--~~P~~~l~~id~~g 138 (190)
+. .+|.+++ ++...
T Consensus 147 i~~~~~P~~vi--~~~~~ 162 (184)
T PF13848_consen 147 IDEDDLPALVI--FDSNK 162 (184)
T ss_dssp TTTSSSSEEEE--EETTT
T ss_pred CCCccCCEEEE--EECCC
Confidence 98 8999999 88543
No 214
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=92.33 E-value=0.72 Score=40.69 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=49.0
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
.+.+.++.|+.+.|..|......|+++.. +.+ .+.+...+... +....+.|++
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~---~i~~~~~~~~~-----------------------~~~~~~~~~v 417 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSE---KLNSEAVNRGE-----------------------EPESETLPKI 417 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHHh-cCC---cEEEEEecccc-----------------------chhhHhhcCC
Confidence 67778889999999999988888877763 333 36655444332 3567889999
Q ss_pred CCCCeeeeeeecCCC
Q psy8729 124 HGIPSLILLAVEAGG 138 (190)
Q Consensus 124 ~~~P~~~l~~id~~g 138 (190)
...|++.+ ++.+|
T Consensus 418 ~~~P~~~i--~~~~~ 430 (555)
T TIGR03143 418 TKLPTVAL--LDDDG 430 (555)
T ss_pred CcCCEEEE--EeCCC
Confidence 99999999 87655
No 215
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=92.28 E-value=0.85 Score=33.07 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=11.9
Q ss_pred CChhhhhhhHHHHH
Q psy8729 56 WCPPCKAFTPQLIE 69 (190)
Q Consensus 56 wC~~C~~~~~~l~~ 69 (190)
+||+|+.....|+.
T Consensus 15 t~~~C~~ak~iL~~ 28 (147)
T cd03031 15 TFEDCNNVRAILES 28 (147)
T ss_pred cChhHHHHHHHHHH
Confidence 89999998888854
No 216
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=92.04 E-value=0.35 Score=31.13 Aligned_cols=54 Identities=24% Similarity=0.315 Sum_probs=40.3
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS 128 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 128 (190)
++.|..+.|+-|......|..+.... .+.+-.|+++. +..+.++|+. .+|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-----~~~l~~vDI~~-----------------------d~~l~~~Y~~-~IPV 52 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-----PFELEEVDIDE-----------------------DPELFEKYGY-RIPV 52 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-----TCEEEEEETTT-----------------------THHHHHHSCT-STSE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-----CceEEEEECCC-----------------------CHHHHHHhcC-CCCE
Confidence 67888999999999999997644332 36777777774 3467889996 6998
Q ss_pred eee
Q psy8729 129 LIL 131 (190)
Q Consensus 129 ~~l 131 (190)
+.+
T Consensus 53 l~~ 55 (81)
T PF05768_consen 53 LHI 55 (81)
T ss_dssp EEE
T ss_pred EEE
Confidence 777
No 217
>KOG1672|consensus
Probab=91.93 E-value=0.32 Score=36.76 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=53.5
Q ss_pred cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729 43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN 122 (190)
Q Consensus 43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (190)
.++.-||+.||-+.-..|+-+-..|..+++.+-+ ..++-|+... .+-+...++
T Consensus 82 ~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~-----------------------~PFlv~kL~ 134 (211)
T KOG1672|consen 82 KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEK-----------------------APFLVTKLN 134 (211)
T ss_pred hcCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEeccc-----------------------Cceeeeeee
Confidence 3677789999999999999999999999988743 4576666553 346688999
Q ss_pred CCCCCeeeeeeecCCCc
Q psy8729 123 VHGIPSLILLAVEAGGR 139 (190)
Q Consensus 123 v~~~P~~~l~~id~~g~ 139 (190)
|..+|++.+ + ++|+
T Consensus 135 IkVLP~v~l--~-k~g~ 148 (211)
T KOG1672|consen 135 IKVLPTVAL--F-KNGK 148 (211)
T ss_pred eeEeeeEEE--E-EcCE
Confidence 999999999 7 4564
No 218
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=91.69 E-value=0.65 Score=31.31 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=28.3
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCC
Q psy8729 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGM 102 (190)
Q Consensus 50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~ 102 (190)
..|+.++|+.|++....|++ .|..+..+-+.-+ .+.++++.+....
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~~l~~~~~~~ 48 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYLKEPPTKEELKELLAKL 48 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCCcEEEeeccCCCCHHHHHHHHHhc
Confidence 46789999999999888854 2334555555432 2345555554433
No 219
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=91.33 E-value=0.71 Score=31.39 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=31.7
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCCC
Q psy8729 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGMP 103 (190)
Q Consensus 50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~~ 103 (190)
..|+.++|+.|++....|.+ .|..++++-+.-+ .+.++++.+++..+
T Consensus 2 ~iy~~~~C~~crka~~~L~~-------~~i~~~~~di~~~p~s~~eL~~~l~~~g 49 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA-------RGVAYTFHDYRKDGLDAATLERWLAKVG 49 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCCeEEEecccCCCCHHHHHHHHHHhC
Confidence 46789999999998888743 2334556555433 36677777776554
No 220
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=90.05 E-value=0.94 Score=31.02 Aligned_cols=44 Identities=18% Similarity=0.410 Sum_probs=27.1
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC-CHHHHHHHHh
Q psy8729 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-SESSYQSYLS 100 (190)
Q Consensus 50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~-~~~~~~~~~~ 100 (190)
..|+.++|+.|++....|++ .|..++.+-+.-+. +.++++.++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~~~~ 46 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIVEEPPSKEELKKWLE 46 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCceEEecccCCcccHHHHHHHHH
Confidence 35789999999999988854 23345555444332 3444444444
No 221
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=89.63 E-value=0.88 Score=31.14 Aligned_cols=66 Identities=18% Similarity=0.209 Sum_probs=40.3
Q ss_pred EEEEEEcCCChhh---hhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCC
Q psy8729 48 IGLYFSAHWCPPC---KAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVH 124 (190)
Q Consensus 48 vlv~F~a~wC~~C---~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 124 (190)
..|.|++..|.-| ....=.+-++.+.+.+. +....+..+ . ...+...||+.
T Consensus 28 ~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~---~~~avv~~~--~---------------------e~~L~~r~gv~ 81 (107)
T PF07449_consen 28 DAVLFFAGDPARFPETADVAVILPELVKAFPGR---FRGAVVARA--A---------------------ERALAARFGVR 81 (107)
T ss_dssp CEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTS---EEEEEEEHH--H---------------------HHHHHHHHT-T
T ss_pred cEEEEECCCCCcCcccccceeEcHHHHHhhhCc---cceEEECch--h---------------------HHHHHHHhCCc
Confidence 3456666666544 44333556666777665 544444411 1 47899999999
Q ss_pred CCCeeeeeeecCCCceEEEc
Q psy8729 125 GIPSLILLAVEAGGRLDVIT 144 (190)
Q Consensus 125 ~~P~~~l~~id~~g~~~i~~ 144 (190)
..|++++ + ++| +.+.
T Consensus 82 ~~PaLvf--~-R~g--~~lG 96 (107)
T PF07449_consen 82 RWPALVF--F-RDG--RYLG 96 (107)
T ss_dssp SSSEEEE--E-ETT--EEEE
T ss_pred cCCeEEE--E-ECC--EEEE
Confidence 9999999 7 567 4443
No 222
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=87.94 E-value=3.8 Score=25.68 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=15.5
Q ss_pred EEEEcCCChhhhhhhHHHHH
Q psy8729 50 LYFSAHWCPPCKAFTPQLIE 69 (190)
Q Consensus 50 v~F~a~wC~~C~~~~~~l~~ 69 (190)
..++.++||+|.+..-.|.+
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~ 22 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTE 22 (77)
T ss_pred eEecCCCCchHHHHHHHHHH
Confidence 35667899999988877743
No 223
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=87.78 E-value=1.8 Score=30.68 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=30.2
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCC
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGM 102 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~ 102 (190)
+..|+.++|+.|++....|.+ .|..+..+-+.-+ .+.++++.+++..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~-------~gi~~~~idi~~~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE-------HDIPFTERNIFSSPLTIDEIKQILRMT 49 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCcEEeeccCChhhHHHHHHHHHHh
Confidence 456789999999998877743 2334555444333 2456777777654
No 224
>PRK12559 transcriptional regulator Spx; Provisional
Probab=87.61 E-value=2.4 Score=29.99 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=31.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhC
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSG 101 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~ 101 (190)
+..|..++|+.|+.....|.+ .|..++.+-+.-+ .+.++++.+++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-------~gi~~~~~di~~~~~s~~el~~~l~~ 48 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE-------NQIDYTEKNIVSNSMTVDELKSILRL 48 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCeEEEEeeCCcCCHHHHHHHHHH
Confidence 456789999999998877743 2334555555443 466788888876
No 225
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=86.68 E-value=2.6 Score=28.98 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=30.3
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCC
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGM 102 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~ 102 (190)
+..|+.++|+.|++....|++ .|..++++-+.-+ .+.++++.+++..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~~~~~~~~el~~~~~~~ 49 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE-------HQIPFEERNLFKQPLTKEELKEILSLT 49 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCceEEEecCCCcchHHHHHHHHHHh
Confidence 346778999999998888854 2334555544333 3456677777644
No 226
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=86.68 E-value=5.2 Score=33.18 Aligned_cols=82 Identities=20% Similarity=0.221 Sum_probs=44.5
Q ss_pred ceeccCCCccceeeeeccCCcEEEEEEEcCCChh--hhhhh---HHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHh
Q psy8729 26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPP--CKAFT---PQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS 100 (190)
Q Consensus 26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~--C~~~~---~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~ 100 (190)
.+.|+..++...+ ++...++|+|+.+--.. .++.. ..+-+++.+.-++ .++.+-.|+...
T Consensus 36 Vi~LneKNfk~~l----Kkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~-~gigfg~VD~~K---------- 100 (383)
T PF01216_consen 36 VIDLNEKNFKRAL----KKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLED-KGIGFGMVDSKK---------- 100 (383)
T ss_dssp CEEE-TTTHHHHH----HH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGG-CTEEEEEEETTT----------
T ss_pred eEEcchhHHHHHH----HhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccc-cCcceEEeccHH----------
Confidence 3445555544333 36778889998775321 21111 2233344444333 347777676654
Q ss_pred CCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729 101 GMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGG 138 (190)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g 138 (190)
+..+++++|+...+++++ +. +|
T Consensus 101 -------------d~klAKKLgv~E~~SiyV--fk-d~ 122 (383)
T PF01216_consen 101 -------------DAKLAKKLGVEEEGSIYV--FK-DG 122 (383)
T ss_dssp -------------THHHHHHHT--STTEEEE--EE-TT
T ss_pred -------------HHHHHHhcCccccCcEEE--EE-CC
Confidence 468999999999999999 74 55
No 227
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=86.23 E-value=2.1 Score=29.53 Aligned_cols=46 Identities=20% Similarity=0.361 Sum_probs=27.6
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCC
Q psy8729 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGM 102 (190)
Q Consensus 50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~ 102 (190)
..|+.++|+.|++....|.+ .|..+.++-+.-+ .+.+++..+++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~l~~~~ 48 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------NGIEYQFIDIGEDGPTREELLDILSLL 48 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCceEEEecCCChhhHHHHHHHHHHc
Confidence 35789999999999988854 2323444433322 2345555555544
No 228
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=85.75 E-value=5.3 Score=27.35 Aligned_cols=52 Identities=6% Similarity=0.167 Sum_probs=36.1
Q ss_pred hhhhhhHHHHHHHHHHh-hcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCC----CCeeeeee
Q psy8729 59 PCKAFTPQLIETYRKLK-EDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHG----IPSLILLA 133 (190)
Q Consensus 59 ~C~~~~~~l~~l~~~~~-~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~P~~~l~~ 133 (190)
.-......+.+++++++ ++ +.++.++.+ . .....+.||+.. .|.+.+
T Consensus 32 ~~~~~~~~~~~vAk~fk~gk---i~Fv~~D~~--~---------------------~~~~l~~fgl~~~~~~~P~~~i-- 83 (111)
T cd03073 32 GTNYWRNRVLKVAKDFPDRK---LNFAVADKE--D---------------------FSHELEEFGLDFSGGEKPVVAI-- 83 (111)
T ss_pred HHHHHHHHHHHHHHHCcCCe---EEEEEEcHH--H---------------------HHHHHHHcCCCcccCCCCEEEE--
Confidence 44567888899999998 44 555555433 2 234678899974 999999
Q ss_pred ecCCC
Q psy8729 134 VEAGG 138 (190)
Q Consensus 134 id~~g 138 (190)
++.++
T Consensus 84 ~~~~~ 88 (111)
T cd03073 84 RTAKG 88 (111)
T ss_pred EeCCC
Confidence 87654
No 229
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=83.49 E-value=4.9 Score=27.68 Aligned_cols=21 Identities=24% Similarity=0.589 Sum_probs=18.7
Q ss_pred HHHHHHHcCCCCCCeeeeeeecC
Q psy8729 114 RQSLASLYNVHGIPSLILLAVEA 136 (190)
Q Consensus 114 ~~~~~~~~~v~~~P~~~l~~id~ 136 (190)
++.+.++|+|..+|++++ ...
T Consensus 60 dP~~F~~y~I~~VPa~V~--~~~ 80 (113)
T PF09673_consen 60 DPRLFRQYNITAVPAFVV--VKD 80 (113)
T ss_pred ChhHHhhCCceEcCEEEE--EcC
Confidence 789999999999999999 654
No 230
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=83.38 E-value=2.3 Score=33.07 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=27.2
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhh
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKE 76 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~ 76 (190)
.++++++.|....||+|+...+.+.+.+....+
T Consensus 83 ~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 83 YAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGK 115 (244)
T ss_pred CCCceEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence 348899999999999999999999886555543
No 231
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=83.06 E-value=5.7 Score=24.18 Aligned_cols=32 Identities=25% Similarity=0.132 Sum_probs=21.3
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeC
Q psy8729 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS 88 (190)
Q Consensus 50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~ 88 (190)
..|+.++|+.|++..-.+.. .|..++.+.++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~-------~gi~~~~~~v~~ 33 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAE-------KGVSVEIIDVDP 33 (73)
T ss_pred EEEECCCChhHHHHHHHHHH-------cCCccEEEEcCC
Confidence 35678899999999877743 234455655544
No 232
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=83.04 E-value=5.5 Score=28.08 Aligned_cols=67 Identities=18% Similarity=0.363 Sum_probs=45.4
Q ss_pred CcEEEEEEEcC--CCh-hh-hhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHH
Q psy8729 45 CQVIGLYFSAH--WCP-PC-KAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASL 120 (190)
Q Consensus 45 ~k~vlv~F~a~--wC~-~C-~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (190)
+...+|.|.-+ .|. .+ ......+.+++++|+++ .+.++.++.+.. ..+.+.
T Consensus 20 ~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk--~i~Fv~vd~~~~-----------------------~~~~~~ 74 (130)
T cd02983 20 KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKK--PWGWLWTEAGAQ-----------------------LDLEEA 74 (130)
T ss_pred CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCC--cEEEEEEeCccc-----------------------HHHHHH
Confidence 45566666532 243 23 34567888899999765 377887777642 347889
Q ss_pred cCCC--CCCeeeeeeecCCC
Q psy8729 121 YNVH--GIPSLILLAVEAGG 138 (190)
Q Consensus 121 ~~v~--~~P~~~l~~id~~g 138 (190)
||+. .+|++++ ++.++
T Consensus 75 fgl~~~~~P~v~i--~~~~~ 92 (130)
T cd02983 75 LNIGGFGYPAMVA--INFRK 92 (130)
T ss_pred cCCCccCCCEEEE--Eeccc
Confidence 9985 5999999 77755
No 233
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=82.33 E-value=5.4 Score=28.25 Aligned_cols=47 Identities=11% Similarity=0.170 Sum_probs=31.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCC
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGM 102 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~ 102 (190)
+..|+.++|+.|+.....|.+ .|..++++-+.-+ .+.++++.+++..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-------~~i~~~~~d~~~~~~s~~eL~~~l~~~ 49 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA-------HQLSYKEQNLGKEPLTKEEILAILTKT 49 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------cCCCeEEEECCCCCCCHHHHHHHHHHh
Confidence 346778999999998777643 2334555554433 4667788887754
No 234
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=81.77 E-value=9.6 Score=29.00 Aligned_cols=77 Identities=10% Similarity=0.182 Sum_probs=52.0
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCC-----cccCCchhHHHHHHHcC
Q psy8729 48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP-----AIPYASETRQSLASLYN 122 (190)
Q Consensus 48 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 122 (190)
.+..|--..|+.|......+.. .+ -.+.+..|..+.+++.++.|...+++. .-.++...+..--..||
T Consensus 111 rlalFvkd~C~~C~~~~~~l~a-----~~--~~~Diylvgs~~dD~~Ir~WA~~~~Idp~~V~~~~ITLNHD~G~w~~lg 183 (200)
T TIGR03759 111 RLALFVKDDCVACDARVQRLLA-----DN--APLDLYLVGSQGDDERIRQWANRHQIDPAKVRSRQITLNHDNGRWLQLG 183 (200)
T ss_pred eEEEEeCCCChHHHHHHHHHhc-----CC--CceeEEEecCCCCHHHHHHHHHHcCCCHHHeecCeeEEecCcchHHHcc
Confidence 4556667999999998888743 22 358888888788899999999988742 22333333444455677
Q ss_pred C-CCCCeeee
Q psy8729 123 V-HGIPSLIL 131 (190)
Q Consensus 123 v-~~~P~~~l 131 (190)
+ ..+|..+.
T Consensus 184 ~~g~lP~~l~ 193 (200)
T TIGR03759 184 LQGQLPAVVQ 193 (200)
T ss_pred CCCCCCEEEE
Confidence 5 45776644
No 235
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=80.61 E-value=6.2 Score=27.14 Aligned_cols=48 Identities=10% Similarity=0.292 Sum_probs=33.0
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCCCC
Q psy8729 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGMPW 104 (190)
Q Consensus 50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~~~ 104 (190)
..|+.+.|..|++....|.+ .|..++++-+.-+ .+.++++.++++.++
T Consensus 3 ~iy~~p~C~~crkA~~~L~~-------~gi~~~~~d~~~~p~s~~eL~~~l~~~g~ 51 (113)
T cd03033 3 IFYEKPGCANNARQKALLEA-------AGHEVEVRDLLTEPWTAETLRPFFGDLPV 51 (113)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCCcEEeehhcCCCCHHHHHHHHHHcCH
Confidence 46779999999988777743 2344666555443 467888888876653
No 236
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=80.17 E-value=17 Score=25.15 Aligned_cols=71 Identities=20% Similarity=0.302 Sum_probs=41.2
Q ss_pred hhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCC-CCeeeeeeecC
Q psy8729 58 PPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHG-IPSLILLAVEA 136 (190)
Q Consensus 58 ~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~P~~~l~~id~ 136 (190)
+.=+.....|++-...+.++ ++.++.+..+.... ..-+........+.+.|++.. .-++++ |++
T Consensus 23 ~~~~~q~~~L~~~~~~l~eR--di~v~~i~~~~~~~-----------~~~~~~~~~~~~lr~~l~~~~~~f~~vL--iGK 87 (118)
T PF13778_consen 23 PRYQQQLEELQNNRCGLDER--DIVVIVITGDGARS-----------PGKPLSPEDIQALRKRLRIPPGGFTVVL--IGK 87 (118)
T ss_pred HHHHHHHHHHHhhhhccccC--ceEEEEEeCCcccc-----------ccCcCCHHHHHHHHHHhCCCCCceEEEE--EeC
Confidence 34455566666655556665 57777774432111 112233344678899998763 346777 999
Q ss_pred CCceEEE
Q psy8729 137 GGRLDVI 143 (190)
Q Consensus 137 ~g~~~i~ 143 (190)
+|.++..
T Consensus 88 DG~vK~r 94 (118)
T PF13778_consen 88 DGGVKLR 94 (118)
T ss_pred CCcEEEe
Confidence 9955444
No 237
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=79.88 E-value=12 Score=25.46 Aligned_cols=65 Identities=8% Similarity=0.011 Sum_probs=41.5
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHH---HhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHH
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRK---LKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASL 120 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~---~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (190)
.+.+..+.||. -..-....+.+.+++++ ++++ +.++.++.+. .....+.
T Consensus 15 ~~~~~~~l~f~--~~~~~~~~~~~~~vAk~~~~~kgk---i~Fv~~d~~~-----------------------~~~~~~~ 66 (111)
T cd03072 15 EGLPFLILFHD--KDDLESLKEFKQAVARQLISEKGA---INFLTADGDK-----------------------FRHPLLH 66 (111)
T ss_pred CCCCeEEEEec--chHHHHHHHHHHHHHHHHHhcCce---EEEEEEechH-----------------------hhhHHHH
Confidence 44445555552 12345677788888888 7654 5555555442 1237888
Q ss_pred cCCCC--CCeeeeeeecCCC
Q psy8729 121 YNVHG--IPSLILLAVEAGG 138 (190)
Q Consensus 121 ~~v~~--~P~~~l~~id~~g 138 (190)
||+.. +|.+.+ .+.++
T Consensus 67 fgl~~~~~P~i~i--~~~~~ 84 (111)
T cd03072 67 LGKTPADLPVIAI--DSFRH 84 (111)
T ss_pred cCCCHhHCCEEEE--Ecchh
Confidence 99986 899998 76544
No 238
>PHA03075 glutaredoxin-like protein; Provisional
Probab=79.74 E-value=1.8 Score=29.98 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=25.7
Q ss_pred cEEEEEEEcCCChhhhhhhHHHHHHHHHHh
Q psy8729 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLK 75 (190)
Q Consensus 46 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~ 75 (190)
|.+++.|.-|.|+-|...-..|.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 458899999999999999999987777764
No 239
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=79.66 E-value=8.5 Score=22.45 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=32.5
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeee
Q psy8729 51 YFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLI 130 (190)
Q Consensus 51 ~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~ 130 (190)
.|+.++|+.|.+..-.+... |..+....++.+.... ..+.+..+...+|.+.
T Consensus 3 ly~~~~~~~~~~~~~~l~~~-------~i~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~P~l~ 54 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK-------GLPYELVPVDLGEGEQ---------------------EEFLALNPLGKVPVLE 54 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc-------CCCcEEEEeCCCCCCC---------------------HHHHhcCCCCCCCEEE
Confidence 46678899999888777543 2345566555443221 1345556677889665
Q ss_pred e
Q psy8729 131 L 131 (190)
Q Consensus 131 l 131 (190)
.
T Consensus 55 ~ 55 (71)
T cd00570 55 D 55 (71)
T ss_pred E
Confidence 5
No 240
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=79.06 E-value=8.4 Score=27.31 Aligned_cols=22 Identities=9% Similarity=0.428 Sum_probs=19.1
Q ss_pred hHHHHHHHcCCCCCCeeeeeeecC
Q psy8729 113 TRQSLASLYNVHGIPSLILLAVEA 136 (190)
Q Consensus 113 ~~~~~~~~~~v~~~P~~~l~~id~ 136 (190)
.++.+.++|+|+.+|++++ ...
T Consensus 59 IdP~lF~~f~I~~VPa~V~--~~~ 80 (130)
T TIGR02742 59 IDPQWFKQFDITAVPAFVV--VKD 80 (130)
T ss_pred EChHHHhhcCceEcCEEEE--ECC
Confidence 3789999999999999999 643
No 241
>PRK09301 circadian clock protein KaiB; Provisional
Probab=78.85 E-value=15 Score=24.98 Aligned_cols=74 Identities=12% Similarity=0.054 Sum_probs=53.2
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV 123 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (190)
++.+++=.|.+...|.+++.+..+.++-+.+... .+++=.|++-. .+++++.+.+
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g--~y~LeVIDv~~-----------------------qPelAE~~~I 58 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKG--VYALKVIDVLK-----------------------NPQLAEEDKI 58 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCC--ceEEEEEEccc-----------------------CHhHHhHCCe
Confidence 3456666778888899999999999887776543 24444454433 4688999999
Q ss_pred CCCCeeeeeeecCCCceEEEc
Q psy8729 124 HGIPSLILLAVEAGGRLDVIT 144 (190)
Q Consensus 124 ~~~P~~~l~~id~~g~~~i~~ 144 (190)
.++|+++- ..+.-+.+++.
T Consensus 59 vATPTLIK--~~P~P~rriiG 77 (103)
T PRK09301 59 LATPTLAK--ILPPPVRKIIG 77 (103)
T ss_pred EEecHHhh--cCCCCcceeec
Confidence 99999987 76665445554
No 242
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=77.90 E-value=17 Score=23.88 Aligned_cols=72 Identities=11% Similarity=0.062 Sum_probs=50.8
Q ss_pred cEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCC
Q psy8729 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHG 125 (190)
Q Consensus 46 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 125 (190)
.+++=.|.+...|.+++.+..+.++-+.+... ..++=.|++.. ++++++.+.+.+
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g--~y~LeVIDv~~-----------------------qP~lAE~~~IvA 57 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQG--VYALKVIDVLK-----------------------NPQLAEEDKILA 57 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCC--ceEEEEEEccc-----------------------CHhHHhHCCEEE
Confidence 44555677888899999999999887776543 24444444433 468899999999
Q ss_pred CCeeeeeeecCCCceEEEc
Q psy8729 126 IPSLILLAVEAGGRLDVIT 144 (190)
Q Consensus 126 ~P~~~l~~id~~g~~~i~~ 144 (190)
+|+++- ..+.-+.++++
T Consensus 58 TPtLIK--~~P~P~rriiG 74 (87)
T TIGR02654 58 TPTLSK--ILPPPVRKIIG 74 (87)
T ss_pred ecHHhh--cCCCCcceeec
Confidence 999987 76665334444
No 243
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=77.86 E-value=5.3 Score=24.25 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=33.2
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeee
Q psy8729 51 YFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLI 130 (190)
Q Consensus 51 ~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~ 130 (190)
.|+.++|++|++..-.|... |..++.+.++...... ....+.+......+|++.
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~-------~l~~~~~~v~~~~~~~-------------------~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEK-------GIDVPLVTVDLAAGEQ-------------------RSPEFLAKNPAGTVPVLE 56 (74)
T ss_pred EEeCCCCcchHHHHHHHHHc-------CCCceEEEeecccCcc-------------------CCHHHHhhCCCCCCCEEE
Confidence 46778999999998888542 2345555555422110 013445555667788876
Q ss_pred e
Q psy8729 131 L 131 (190)
Q Consensus 131 l 131 (190)
.
T Consensus 57 ~ 57 (74)
T cd03051 57 L 57 (74)
T ss_pred e
Confidence 6
No 244
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=76.55 E-value=18 Score=25.40 Aligned_cols=83 Identities=14% Similarity=0.211 Sum_probs=48.6
Q ss_pred ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCC
Q psy8729 26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105 (190)
Q Consensus 26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~ 105 (190)
.+.|...+++..+. +.+.++|-|=... |+- .--.++.+++++-...+.++-+..|.+.+
T Consensus 6 ~v~LD~~tFdKvi~----kf~~~LVKFD~ay-PyG-eKhd~F~~~A~e~~~~~~dLLvAeVGikD--------------- 64 (126)
T PF07912_consen 6 CVPLDELTFDKVIP----KFKYVLVKFDVAY-PYG-EKHDAFKKLAKEASASSDDLLVAEVGIKD--------------- 64 (126)
T ss_dssp SEEESTTHHHHHGG----GSSEEEEEEEESS---C-HHHHHHHHHHHHHHCC-SSEEEEEEECBS---------------
T ss_pred eeeccceehhheec----cCceEEEEEeccC-CCc-chHHHHHHHHHHHhcCCCceEEEEeCccc---------------
Confidence 35566666666665 6788999985432 221 33446677774544444566666666532
Q ss_pred cccCCchhHHHHHHHcCCC--CCCeeeee
Q psy8729 106 AIPYASETRQSLASLYNVH--GIPSLILL 132 (190)
Q Consensus 106 ~~~~~~~~~~~~~~~~~v~--~~P~~~l~ 132 (190)
+....+.++.++|++. .+|.+++|
T Consensus 65 ---YGek~N~~Laery~i~ke~fPv~~LF 90 (126)
T PF07912_consen 65 ---YGEKENMELAERYKIDKEDFPVIYLF 90 (126)
T ss_dssp ---SSS-CCHHHHHHTT-SCCC-SEEEEE
T ss_pred ---ccchhHHHHHHHhCCCcccCCEEEEe
Confidence 0111268999999994 68999994
No 245
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=76.38 E-value=5.5 Score=29.58 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=24.8
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEE
Q psy8729 51 YFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIF 85 (190)
Q Consensus 51 ~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~ 85 (190)
.|..|.|+.|-...|.+.++..+|..+ ..+.++.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~-i~~~~i~ 35 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK-IEFRFIP 35 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT-EEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc-EEEEEEE
Confidence 588999999999999999999999875 2344433
No 246
>KOG2640|consensus
Probab=76.24 E-value=0.65 Score=37.62 Aligned_cols=31 Identities=26% Similarity=0.546 Sum_probs=26.3
Q ss_pred CcEEEEEEEcCCChhhhhhhHHHHHHHHHHh
Q psy8729 45 CQVIGLYFSAHWCPPCKAFTPQLIETYRKLK 75 (190)
Q Consensus 45 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~ 75 (190)
...+-+.||++|||..+...|++.-.+..|+
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~ 106 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFS 106 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhcc
Confidence 5668889999999999999999987766664
No 247
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=76.14 E-value=9.9 Score=27.99 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=32.1
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC
Q psy8729 48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD 89 (190)
Q Consensus 48 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d 89 (190)
+|.+|+..-||.|-...+.|.++.+.+.+ ..+....+.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~--~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPD--VEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTT--CEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CcEEEeccccc
Confidence 46788999999999999999999999833 35666666654
No 248
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=75.55 E-value=4.9 Score=24.62 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=21.3
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeC
Q psy8729 51 YFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS 88 (190)
Q Consensus 51 ~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~ 88 (190)
.|+.++|+.|++..-.|... |..++++.++.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~-------gi~~e~~~i~~ 33 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKAL-------GLELNLKEVNL 33 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHc-------CCCCEEEEecC
Confidence 56789999999877777442 34566666654
No 249
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=75.53 E-value=18 Score=22.89 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=45.6
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCC
Q psy8729 48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIP 127 (190)
Q Consensus 48 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P 127 (190)
.+..|-+...+.+...+..+.++-+.+.+. .+++=.|++.. ++++++.+++.++|
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~--~~~LeVIDv~~-----------------------~P~lAe~~~ivAtP 57 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGG--PYELEVIDVLK-----------------------QPQLAEEDKIVATP 57 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCC--cEEEEEEEccc-----------------------CHhHHhhCCEEEec
Confidence 455566777788999999998888887633 45554455443 46889999999999
Q ss_pred eeeeeeecCCC
Q psy8729 128 SLILLAVEAGG 138 (190)
Q Consensus 128 ~~~l~~id~~g 138 (190)
+++- ..+.-
T Consensus 58 tLvk--~~P~P 66 (72)
T cd02978 58 TLVK--VLPPP 66 (72)
T ss_pred hhhh--cCCCC
Confidence 9876 55543
No 250
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=75.23 E-value=7.8 Score=26.29 Aligned_cols=53 Identities=8% Similarity=0.232 Sum_probs=36.7
Q ss_pred HHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCC
Q psy8729 69 ETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHG 125 (190)
Q Consensus 69 ~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 125 (190)
+...++...| +.++.|.++.. +..+.|.+..+| .+++..|.+..+-+.+|+..
T Consensus 4 ~~~~~l~~~g--v~lv~I~~g~~-~~~~~f~~~~~~-p~~ly~D~~~~lY~~lg~~~ 56 (115)
T PF13911_consen 4 RRKPELEAAG--VKLVVIGCGSP-EGIEKFCELTGF-PFPLYVDPERKLYKALGLKR 56 (115)
T ss_pred HhHHHHHHcC--CeEEEEEcCCH-HHHHHHHhccCC-CCcEEEeCcHHHHHHhCCcc
Confidence 3344555544 77888887744 348888877666 45577888888888888764
No 251
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=73.37 E-value=18 Score=21.93 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=14.7
Q ss_pred EEEcCCChhhhhhhHHHHH
Q psy8729 51 YFSAHWCPPCKAFTPQLIE 69 (190)
Q Consensus 51 ~F~a~wC~~C~~~~~~l~~ 69 (190)
.++.++||+|.+..-.|..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~ 21 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGL 21 (71)
T ss_pred eEecCCCcHhHHHHHHHHH
Confidence 3567899999988877743
No 252
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=71.60 E-value=5.9 Score=31.34 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=25.2
Q ss_pred cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHH
Q psy8729 43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKL 74 (190)
Q Consensus 43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~ 74 (190)
..||+.+++..+-|||.|....=.|-.....|
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrf 87 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRF 87 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhc
Confidence 48999999999999999998776664444444
No 253
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=69.69 E-value=42 Score=24.69 Aligned_cols=98 Identities=11% Similarity=0.229 Sum_probs=54.8
Q ss_pred CCcEEEEEEEcCCChhhhhhhHHHHHHHHH-HhhcCCcEEEEEe-eCCCC----HHHHHHHHh----CCCCCcccCCchh
Q psy8729 44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRK-LKEDGYQFEIIFV-SSDRS----ESSYQSYLS----GMPWPAIPYASET 113 (190)
Q Consensus 44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~-~~~~g~~~~ii~i-~~d~~----~~~~~~~~~----~~~~~~~~~~~~~ 113 (190)
.||+.+|...|-....-....|.+..+.+. ++.+ .++..+| +.|+. --.++..++ +++|..+- .|.
T Consensus 36 ~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d--~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~~v--lD~ 111 (160)
T PF09695_consen 36 PGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHD--KYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQFV--LDS 111 (160)
T ss_pred CCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCcc--ceeEEEEEecccccccchHHHHHHHHHhhhhCCCcEEE--EcC
Confidence 788887777665544444445555555444 4443 4555444 45532 234444444 34454433 344
Q ss_pred HHHHHHHcCCCCC-CeeeeeeecCCCceEEEcccc
Q psy8729 114 RQSLASLYNVHGI-PSLILLAVEAGGRLDVITTEA 147 (190)
Q Consensus 114 ~~~~~~~~~v~~~-P~~~l~~id~~g~~~i~~~~~ 147 (190)
+..+.+.+++..- -.+++ +|++|+++....+.
T Consensus 112 ~G~~~~aW~L~~~~SaiiV--lDK~G~V~F~k~G~ 144 (160)
T PF09695_consen 112 NGVVRKAWQLQEESSAIIV--LDKQGKVQFVKEGA 144 (160)
T ss_pred CCceeccccCCCCCceEEE--EcCCccEEEEECCC
Confidence 5667777777532 45778 99999655444433
No 254
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=68.03 E-value=29 Score=22.26 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=20.8
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC
Q psy8729 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD 89 (190)
Q Consensus 50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d 89 (190)
..|+.+.|+.|++..-.|.. .|..++++.++..
T Consensus 20 ~Ly~~~~sp~~~kv~~~L~~-------~gl~~~~~~v~~~ 52 (89)
T cd03055 20 RLYSMRFCPYAQRARLVLAA-------KNIPHEVININLK 52 (89)
T ss_pred EEEeCCCCchHHHHHHHHHH-------cCCCCeEEEeCCC
Confidence 34567789999988776643 2334666655543
No 255
>KOG2507|consensus
Probab=67.98 E-value=24 Score=30.19 Aligned_cols=24 Identities=17% Similarity=0.505 Sum_probs=20.6
Q ss_pred HHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729 114 RQSLASLYNVHGIPSLILLAVEAGGR 139 (190)
Q Consensus 114 ~~~~~~~~~v~~~P~~~l~~id~~g~ 139 (190)
..+|..-|-+..+|..|+ |+..|.
T Consensus 66 a~qFs~IYp~v~vPs~ff--Ig~sGt 89 (506)
T KOG2507|consen 66 ATQFSAIYPYVSVPSIFF--IGFSGT 89 (506)
T ss_pred hhhhhhhcccccccceee--ecCCCc
Confidence 456778888999999999 999996
No 256
>KOG3170|consensus
Probab=67.95 E-value=21 Score=27.43 Aligned_cols=41 Identities=10% Similarity=0.155 Sum_probs=35.3
Q ss_pred cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEee
Q psy8729 43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVS 87 (190)
Q Consensus 43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~ 87 (190)
+++-+|||..|...-|.|.-....|+.++.+|+. ++++-|-
T Consensus 109 s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~----iKFVki~ 149 (240)
T KOG3170|consen 109 SEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ----IKFVKIP 149 (240)
T ss_pred cCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc----ceEEecc
Confidence 3788999999999999999999999999999964 5666554
No 257
>KOG0541|consensus
Probab=67.16 E-value=5.8 Score=29.06 Aligned_cols=83 Identities=17% Similarity=0.312 Sum_probs=52.2
Q ss_pred eeeeccCCcEEEEEEEc--CCChh-hhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCC-CcccCCchh
Q psy8729 38 VLSYIESCQVIGLYFSA--HWCPP-CKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPW-PAIPYASET 113 (190)
Q Consensus 38 ~~~~~~~~k~vlv~F~a--~wC~~-C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~-~~~~~~~~~ 113 (190)
..+.+.++|-+ |.|.. ...|. |+...|-+.+-+++++.+|.+ +++.++++ ++..++.|.+.++- ..+.+..|.
T Consensus 36 ~~~~l~~GKKv-IifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd-~iicvSVn-DpFv~~aW~k~~g~~~~V~f~aD~ 112 (171)
T KOG0541|consen 36 NVSSLFKGKKV-ILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVD-EIICVSVN-DPFVMKAWAKSLGANDHVKFVADP 112 (171)
T ss_pred EhHHhcCCceE-EEEcCCCccCCccccccCchHHHHHHHHHhcCCc-EEEEEecC-cHHHHHHHHhhcCccceEEEEecC
Confidence 33333366544 34443 33444 788999998888999988632 35566766 67677777776653 245566666
Q ss_pred HHHHHHHcCC
Q psy8729 114 RQSLASLYNV 123 (190)
Q Consensus 114 ~~~~~~~~~v 123 (190)
+.++.+.+|+
T Consensus 113 ~g~ftk~lgl 122 (171)
T KOG0541|consen 113 AGEFTKSLGL 122 (171)
T ss_pred CCceeeeccc
Confidence 6677766654
No 258
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=66.63 E-value=36 Score=24.38 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=40.2
Q ss_pred CcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCC
Q psy8729 45 CQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVH 124 (190)
Q Consensus 45 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 124 (190)
.++-.|.+|..-|+.|......|.+ ++.+..+.+..+.... ...+....++.
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~-----~D~~~~i~f~~~q~e~-----------------------g~~~l~~~~l~ 57 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIR-----RDQGGRIRFAALQSEP-----------------------GQALLEAAGLD 57 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHH-----hccCCcEEEEeccCch-----------------------hhhHHhhcCCC
Confidence 4455677889999999998887754 2222346665554332 34556666665
Q ss_pred CC-CeeeeeeecCCC
Q psy8729 125 GI-PSLILLAVEAGG 138 (190)
Q Consensus 125 ~~-P~~~l~~id~~g 138 (190)
.- +..++ ++++|
T Consensus 58 ~~~~~s~~--~~~~g 70 (137)
T COG3011 58 PEDVDSVL--LVEAG 70 (137)
T ss_pred hhhhheee--EecCC
Confidence 33 55666 66777
No 259
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=65.57 E-value=26 Score=23.94 Aligned_cols=48 Identities=10% Similarity=0.221 Sum_probs=31.4
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCCCC
Q psy8729 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGMPW 104 (190)
Q Consensus 50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~~~ 104 (190)
..|+.+.|.-|++....|++ .|..++++-+.-+ .+.++++.+++..++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~~~p~t~~el~~~l~~~g~ 50 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLED-------KGIEPEVVKYLKNPPTKSELEAIFAKLGL 50 (114)
T ss_pred EEEECCCCHHHHHHHHHHHH-------CCCCeEEEeccCCCcCHHHHHHHHHHcCC
Confidence 35778999999998888854 2334555444322 456777777776654
No 260
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=65.33 E-value=33 Score=23.73 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=33.3
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeC-CCCHHHHHHHHhCCC
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS-DRSESSYQSYLSGMP 103 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~-d~~~~~~~~~~~~~~ 103 (190)
+-.|+.+.|..|+.....|++ .|..++++-+.- ..+.++++.+++..+
T Consensus 3 itiy~~p~C~t~rka~~~L~~-------~gi~~~~~~y~~~~~s~~eL~~~l~~~g 51 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE-------HGIEYTFIDYLKTPPSREELKKILSKLG 51 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCcEEEEeecCCCCHHHHHHHHHHcC
Confidence 456789999999999888843 233455554443 357788888887665
No 261
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=63.55 E-value=32 Score=21.13 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=33.1
Q ss_pred EEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeee
Q psy8729 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLIL 131 (190)
Q Consensus 52 F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l 131 (190)
++.++|+.|++..-.++. + |..+++..+..... ...+.+......+|++.-
T Consensus 2 y~~~~Sp~~~kv~~~l~~-----~--~i~~~~~~v~~~~~----------------------~~~~~~~~p~~~vPvL~~ 52 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEE-----K--GIPYELVPVDPEEK----------------------RPEFLKLNPKGKVPVLVD 52 (75)
T ss_dssp EEETTSHHHHHHHHHHHH-----H--TEEEEEEEEBTTST----------------------SHHHHHHSTTSBSSEEEE
T ss_pred CCcCCChHHHHHHHHHHH-----c--CCeEEEeccCcccc----------------------hhHHHhhcccccceEEEE
Confidence 568999999998887743 2 23466666654422 245555666778887654
No 262
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=62.94 E-value=52 Score=25.16 Aligned_cols=77 Identities=16% Similarity=0.331 Sum_probs=40.5
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc-c--cCCchhHHHHHHHcCCC--C
Q psy8729 51 YFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA-I--PYASETRQSLASLYNVH--G 125 (190)
Q Consensus 51 ~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~v~--~ 125 (190)
.|.+--|..|...-..|.++.++ .++..++..+|- -+..||.- | +-..+-.....+.++.. .
T Consensus 4 LFTSQGCsSCPpAD~~L~~l~~~-----~~Vi~LafHVDY--------WDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vY 70 (202)
T PF06764_consen 4 LFTSQGCSSCPPADRLLSELAAR-----PDVIALAFHVDY--------WDYLGWKDPFASPEFTQRQRAYARRFGLRSVY 70 (202)
T ss_dssp EEE-TT-TT-HHHHHHHHHHHHH-----TSSEEEEEE-ST--------T-SSSS--TT--HHHHHHHHHHHHHTT-S---
T ss_pred EecCCCCCCCcHHHHHHHHhhcC-----CCEEEEEecCCc--------ccCCCCCCccCChhHHHHHHHHHHHhCCCCCc
Confidence 46688999999999999988887 146677777762 22233310 1 00011134445555544 5
Q ss_pred CCeeeeeeecCCCceEEEcc
Q psy8729 126 IPSLILLAVEAGGRLDVITT 145 (190)
Q Consensus 126 ~P~~~l~~id~~g~~~i~~~ 145 (190)
+|.+++ ||+......
T Consensus 71 TPQ~vV-----nG~~~~~g~ 85 (202)
T PF06764_consen 71 TPQVVV-----NGREHRVGS 85 (202)
T ss_dssp SSEEEE-----TTTEEEETT
T ss_pred CCeEEE-----CCeeeeecc
Confidence 899988 574444443
No 263
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=61.45 E-value=17 Score=26.79 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=24.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHh
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLK 75 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~ 75 (190)
+.+|+.+.||.|-...+.|.++.+.+.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 567889999999999999999999883
No 264
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=60.84 E-value=34 Score=26.27 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCC
Q psy8729 66 QLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAG 137 (190)
Q Consensus 66 ~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~ 137 (190)
.|.++.++-...|..+.+-++--+.-.+.++....-.. .........++.+.++|+|..+|++++ ....
T Consensus 104 sLk~Ll~qa~~~G~p~VlRG~~~nsfk~Ta~~v~~L~~-~~~~~gv~IDP~lF~~F~I~~VPafVv--~C~~ 172 (212)
T PRK13730 104 GLKRMLGETRHYGIPATLRGMVNNDLKTTAEAVLSLVK-DGATDGVQIDPTLFSQYGIRSVPALVV--FCSQ 172 (212)
T ss_pred HHHHHHHHHHHhCCcEEEeCCCCCCHHHHHHHHHHHhc-cCCCCceeECHHHHHhcCCccccEEEE--EcCC
Confidence 34444444444443455555443333333333322110 001112233789999999999999999 6543
No 265
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=59.20 E-value=13 Score=22.96 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=15.6
Q ss_pred EEEEcCCChhhhhhhHHHHH
Q psy8729 50 LYFSAHWCPPCKAFTPQLIE 69 (190)
Q Consensus 50 v~F~a~wC~~C~~~~~~l~~ 69 (190)
..|..+.||.|++..-.|..
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~ 22 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDY 22 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHH
Confidence 35667889999999877743
No 266
>KOG3171|consensus
Probab=58.98 E-value=22 Score=27.64 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=56.0
Q ss_pred cceeccCCCcc-ceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCC
Q psy8729 25 YNIGLAEGTVT-TKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMP 103 (190)
Q Consensus 25 ~~~~l~~~~~~-~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~ 103 (190)
+.+.+.++..- ..+... .+...++|..|-+--+-|-.+..-+.=|+.+|+ .+++.-|...
T Consensus 139 ~V~El~~gkqfld~idke-~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP----~vKFckikss-------------- 199 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKE-LKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP----IVKFCKIKSS-------------- 199 (273)
T ss_pred eEEEeccchhHHHHHhcc-cceEEEEEEEecCCCchHHHHhhhHHHhhccCC----ceeEEEeeec--------------
Confidence 55556655421 111111 145567888999999999999888888888885 4677766543
Q ss_pred CCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729 104 WPAIPYASETRQSLASLYNVHGIPSLILLAVEAGG 138 (190)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g 138 (190)
.-....+|-..++|++.+ + ++|
T Consensus 200 ----------~~gas~~F~~n~lP~Lli--Y-kgG 221 (273)
T KOG3171|consen 200 ----------NTGASDRFSLNVLPTLLI--Y-KGG 221 (273)
T ss_pred ----------cccchhhhcccCCceEEE--e-eCC
Confidence 234466888999999999 6 566
No 267
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=58.10 E-value=10 Score=28.08 Aligned_cols=21 Identities=29% Similarity=0.581 Sum_probs=16.4
Q ss_pred HHHHHHHcCCCCCCeeeeeeecC
Q psy8729 114 RQSLASLYNVHGIPSLILLAVEA 136 (190)
Q Consensus 114 ~~~~~~~~~v~~~P~~~l~~id~ 136 (190)
+..++++++|.++||+++ ++.
T Consensus 136 D~~la~~m~I~~~Ptlvi--~~~ 156 (176)
T PF13743_consen 136 DQQLAREMGITGFPTLVI--FNE 156 (176)
T ss_dssp HHHHHHHTT-SSSSEEEE--E--
T ss_pred HHHHHHHcCCCCCCEEEE--Eec
Confidence 678899999999999999 773
No 268
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=57.13 E-value=44 Score=23.44 Aligned_cols=48 Identities=13% Similarity=0.277 Sum_probs=32.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCCC
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGMP 103 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~~ 103 (190)
+..|+.+.|.-|++....|++ .|..++++-+--+ .+.++++.+++..+
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~-------~gi~~~~~d~~~~p~t~~eL~~~l~~~g 51 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA-------SGHDVEVQDILKEPWHADTLRPYFGNKP 51 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCcEEEeccCCCcCHHHHHHHHHHcC
Confidence 456778999999998888853 2334555544332 46788888887665
No 269
>PRK10026 arsenate reductase; Provisional
Probab=56.84 E-value=67 Score=23.07 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=34.5
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCCCC
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGMPW 104 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~~~ 104 (190)
+..|+.+.|.-|++....|++ .|..+.++-+--+ .+.++++.+++..++
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~-------~gi~~~~~d~~~~ppt~~eL~~~l~~~g~ 53 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRN-------SGTEPTIIHYLETPPTRDELVKLIADMGI 53 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCcEEEeeeCCCcCHHHHHHHHHhCCC
Confidence 446779999999999988854 1334555554444 477889999987663
No 270
>PRK10853 putative reductase; Provisional
Probab=56.70 E-value=35 Score=23.57 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=31.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCCCC
Q psy8729 49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGMPW 104 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~~~ 104 (190)
+..|+.+.|..|++....|.+ .|..++++-+--+ .+.++++.++++.|+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~d~~k~p~s~~eL~~~l~~~g~ 51 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA-------QGIDYRFHDYRVDGLDSELLQGFIDELGW 51 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH-------cCCCcEEeehccCCcCHHHHHHHHHHcCH
Confidence 346778999999998888853 2333444433322 467788888776653
No 271
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=56.66 E-value=50 Score=21.14 Aligned_cols=31 Identities=10% Similarity=0.009 Sum_probs=22.4
Q ss_pred cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhh
Q psy8729 43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKE 76 (190)
Q Consensus 43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~ 76 (190)
...++++|-|+..+|. .....+.+.++.+++
T Consensus 15 ~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~ 45 (97)
T cd02981 15 DKDDVVVVGFFKDEES---EEYKTFEKVAESLRD 45 (97)
T ss_pred ccCCeEEEEEECCCCc---HHHHHHHHHHHhccc
Confidence 3677888899999887 455666666777654
No 272
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=56.65 E-value=44 Score=24.09 Aligned_cols=33 Identities=21% Similarity=0.517 Sum_probs=23.6
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC
Q psy8729 48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD 89 (190)
Q Consensus 48 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d 89 (190)
-++.+.+|.|.=|..++..|+ ..| +++-.+..+
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk-------~~G--f~Vk~~~~~ 59 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK-------ANG--FEVKVVETD 59 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH-------hCC--cEEEEeecC
Confidence 356778999999999988884 222 566555555
No 273
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=56.47 E-value=44 Score=22.69 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=30.3
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCCC
Q psy8729 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGMP 103 (190)
Q Consensus 50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~~ 103 (190)
..|+.+.|..|++....|++ .|..++++-+.-+ -+.+++..+++..+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~~~~~t~~el~~~l~~~~ 49 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEE-------AGIEPEIVEYLKTPPTAAELRELLAKLG 49 (112)
T ss_pred EEEECCCCHHHHHHHHHHHH-------CCCCeEEEecccCCcCHHHHHHHHHHcC
Confidence 45778999999998877743 2234555444333 36677777777554
No 274
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=54.80 E-value=31 Score=29.07 Aligned_cols=91 Identities=15% Similarity=0.135 Sum_probs=52.9
Q ss_pred hhHHHHHhhhCCCCCCCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEE
Q psy8729 4 ESDQLYNNLLKPGGSKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEI 83 (190)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~i 83 (190)
|-.++...++.-++..|....-.+ +.+... .+..-+=.|++-.|..|......|+-++-- ++++..
T Consensus 85 EftSlVLaLlqv~G~ppk~~q~vi--------eqik~i--~g~~~FETy~SltC~nCPDVVQALN~msvl----Np~I~H 150 (520)
T COG3634 85 EFTSLVLALLQVGGHPPKEDQDVI--------EQIKAI--DGDFHFETYFSLTCHNCPDVVQALNLMSVL----NPRIKH 150 (520)
T ss_pred hHHHHHHHHHHhcCCCCchhHHHH--------HHHHhc--CCceeEEEEEEeeccCChHHHHHHHHHHhc----CCCcee
Confidence 445556666666666553211111 111111 566666677888899999998888755332 245777
Q ss_pred EEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeee
Q psy8729 84 IFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLIL 131 (190)
Q Consensus 84 i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l 131 (190)
.+|...- -+.--+.-+|.++|+.|+
T Consensus 151 ~~IdGa~-----------------------Fq~Evear~IMaVPtvfl 175 (520)
T COG3634 151 TAIDGAL-----------------------FQDEVEARNIMAVPTVFL 175 (520)
T ss_pred EEecchh-----------------------hHhHHHhccceecceEEE
Confidence 7765321 112233458889999998
No 275
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=54.48 E-value=4.5 Score=28.92 Aligned_cols=14 Identities=36% Similarity=0.840 Sum_probs=12.1
Q ss_pred CCChhhhhhhHHHH
Q psy8729 55 HWCPPCKAFTPQLI 68 (190)
Q Consensus 55 ~wC~~C~~~~~~l~ 68 (190)
-.||+|++.+|+|.
T Consensus 10 i~CPhCRQ~ipALt 23 (163)
T TIGR02652 10 IRCPHCRQNIPALT 23 (163)
T ss_pred CcCchhhcccchhe
Confidence 46999999999884
No 276
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=54.26 E-value=4.4 Score=28.89 Aligned_cols=14 Identities=36% Similarity=0.835 Sum_probs=12.1
Q ss_pred CCChhhhhhhHHHH
Q psy8729 55 HWCPPCKAFTPQLI 68 (190)
Q Consensus 55 ~wC~~C~~~~~~l~ 68 (190)
-.||+|++.+|+|.
T Consensus 7 i~CPhCRq~ipALt 20 (161)
T PF09654_consen 7 IQCPHCRQTIPALT 20 (161)
T ss_pred CcCchhhcccchhe
Confidence 46999999999884
No 277
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=53.94 E-value=26 Score=20.98 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=20.2
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeC
Q psy8729 51 YFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS 88 (190)
Q Consensus 51 ~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~ 88 (190)
.|+.+.|+.|.+..-.+... |..++...++.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~-------~~~~~~~~i~~ 33 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALL-------GIPYEWVEVDI 33 (73)
T ss_pred EEeCCCCccHHHHHHHHHHc-------CCCcEEEEecC
Confidence 46678899999887776432 23455665554
No 278
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=53.16 E-value=24 Score=23.72 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=21.7
Q ss_pred EEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEe
Q psy8729 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFV 86 (190)
Q Consensus 52 F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i 86 (190)
||-.+||.|......+.+. +.+..+.++.+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~-----d~~~~l~~~~~ 31 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR-----DRGGRLRFVDI 31 (114)
T ss_pred EECCCCHhHHHHHHHHHhc-----CCCCCEEEEEC
Confidence 6788999999999998664 21234666655
No 279
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=50.86 E-value=59 Score=25.66 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=43.5
Q ss_pred eeeeeccCCcEEEEEEEcCCChh-hhhhhHHHHHHHHHHhhcCC-cEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729 37 KVLSYIESCQVIGLYFSAHWCPP-CKAFTPQLIETYRKLKEDGY-QFEIIFVSSDRSESSYQSYLSGMPWPA 106 (190)
Q Consensus 37 ~~~~~~~~~k~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~g~-~~~ii~i~~d~~~~~~~~~~~~~~~~~ 106 (190)
.+++.+ ...+.+-.|++..-+. -......+.++.++|...++ ++.+-.|+.+.+++..++.++++|...
T Consensus 18 ~~L~~L-~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 18 KVLKSL-DEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQP 88 (271)
T ss_pred HHHHhC-CCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCc
Confidence 344444 4555555555553333 45556677777777776665 799999988777777777666665433
No 280
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=49.78 E-value=23 Score=26.88 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=14.5
Q ss_pred HHHHHHcCCCCCCeeee
Q psy8729 115 QSLASLYNVHGIPSLIL 131 (190)
Q Consensus 115 ~~~~~~~~v~~~P~~~l 131 (190)
....+.+|+.++|++++
T Consensus 157 ~~~a~~~gI~gtPtfiI 173 (207)
T PRK10954 157 EKAAADLQLRGVPAMFV 173 (207)
T ss_pred HHHHHHcCCCCCCEEEE
Confidence 45578899999999998
No 281
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=49.47 E-value=18 Score=26.24 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=33.7
Q ss_pred HHHHHHcCCCCCCeeeeeeecCCCceEEEcccc--ccccccCCCCCcCCCCcccccccCCCCCCCCCCCC
Q psy8729 115 QSLASLYNVHGIPSLILLAVEAGGRLDVITTEA--RHELSEDPDGEFFPWPPKLVNVLSPRHCPKLYDSP 182 (190)
Q Consensus 115 ~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 182 (190)
..+++.+++.. |++++ +.+.....+.+.+. ..+.+.++... ..-+.+..++...+..+...+
T Consensus 31 ~~~~~~~~~~~-p~i~~--~k~~~~~~~~y~~~~~~~~~l~~fI~~---~~~P~v~~~t~~n~~~~~~~~ 94 (184)
T PF13848_consen 31 EELAKKYGIKE-PTIVV--YKKFDEKPVVYDGDKFTPEELKKFIKK---NSFPLVPELTPENFEKLFSSP 94 (184)
T ss_dssp HHHHHHCTCSS-SEEEE--EECTTTSEEEESSSTTSHHHHHHHHHH---HSSTSCEEESTTHHHHHHSTS
T ss_pred HHHHHHhCCCC-CcEEE--eccCCCCceecccccCCHHHHHHHHHH---hccccccccchhhHHHHhcCC
Confidence 57888899998 99999 76522112333332 22223332211 112336667776666665554
No 282
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=48.68 E-value=75 Score=20.91 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=21.2
Q ss_pred CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC
Q psy8729 55 HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR 90 (190)
Q Consensus 55 ~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~ 90 (190)
-+|++|++..-.|.. +|..++++.|+...
T Consensus 20 g~cpf~~rvrl~L~e-------Kgi~ye~~~vd~~~ 48 (91)
T cd03061 20 GNCPFCQRLFMVLWL-------KGVVFNVTTVDMKR 48 (91)
T ss_pred CCChhHHHHHHHHHH-------CCCceEEEEeCCCC
Confidence 579999999888854 24567787777654
No 283
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=48.38 E-value=30 Score=21.36 Aligned_cols=33 Identities=15% Similarity=0.063 Sum_probs=21.0
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC
Q psy8729 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD 89 (190)
Q Consensus 50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d 89 (190)
..|+.+.|+.|++..-.+.+ .|..++++.++..
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e-------~gl~~e~~~v~~~ 34 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAE-------KGLRCEEYDVSLP 34 (73)
T ss_pred EEecCCCCccHHHHHHHHHH-------cCCCCEEEEecCC
Confidence 35667889999887755532 2345677766553
No 284
>KOG4498|consensus
Probab=48.32 E-value=53 Score=24.90 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=33.4
Q ss_pred cceeeeec-cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEee
Q psy8729 35 TTKVLSYI-ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVS 87 (190)
Q Consensus 35 ~~~~~~~~-~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~ 87 (190)
+....+.+ ++++.+|...--+-|--|+.....|..+..-+...| +.+++|.
T Consensus 40 ~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~G--v~Li~vg 91 (197)
T KOG4498|consen 40 ESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELG--VVLIAVG 91 (197)
T ss_pred ceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhC--CEEEEEe
Confidence 33333333 345544444457999999999999999955555555 6666665
No 285
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=42.34 E-value=1.1e+02 Score=20.88 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=36.6
Q ss_pred EEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCC
Q psy8729 47 VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVH 124 (190)
Q Consensus 47 ~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 124 (190)
-|+|.|..+ -..-...+..+.+.++..++. -.+..|++.+.+ ...+|+.+.+.
T Consensus 21 NVLvLy~ks-~k~a~~~Lk~~~~~A~~vkG~---gT~~~vdCgd~e---------------------~kKLCKKlKv~ 73 (112)
T cd03067 21 NVLVLYSKS-AKSAEALLKLLSDVAQAVKGQ---GTIAWIDCGDSE---------------------SRKLCKKLKVD 73 (112)
T ss_pred cEEEEEecc-hhhHHHHHHHHHHHHHHhcCc---eeEEEEecCChH---------------------HHHHHHHHccC
Confidence 355555444 334455666788888888876 478888887544 57899999887
No 286
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=41.93 E-value=28 Score=26.62 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=22.8
Q ss_pred HHHHHHcCCCCCCeeeeeeecCCCceEEEccc
Q psy8729 115 QSLASLYNVHGIPSLILLAVEAGGRLDVITTE 146 (190)
Q Consensus 115 ~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~~ 146 (190)
..+++++|+.++||+.+ .+ +|++.++..+
T Consensus 164 r~l~~rlg~~GfPTl~l--e~-ng~~~~l~~g 192 (212)
T COG3531 164 RRLMQRLGAAGFPTLAL--ER-NGTMYVLGTG 192 (212)
T ss_pred HHHHHHhccCCCCeeee--ee-CCceEeccCC
Confidence 46788899999999999 75 8866666544
No 287
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=39.04 E-value=24 Score=29.51 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=20.3
Q ss_pred CCChhhhhhhHHHHHHHHHHhh
Q psy8729 55 HWCPPCKAFTPQLIETYRKLKE 76 (190)
Q Consensus 55 ~wC~~C~~~~~~l~~l~~~~~~ 76 (190)
++||.|...+..|+++.+++..
T Consensus 95 t~~p~~~~~~~~lq~~~~~lN~ 116 (361)
T PF06122_consen 95 TLCPQCGNIMDKLQKIAQALNQ 116 (361)
T ss_pred HhCHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999998865
No 288
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=38.38 E-value=68 Score=19.41 Aligned_cols=20 Identities=15% Similarity=0.039 Sum_probs=14.3
Q ss_pred EEEEcCCChhhhhhhHHHHH
Q psy8729 50 LYFSAHWCPPCKAFTPQLIE 69 (190)
Q Consensus 50 v~F~a~wC~~C~~~~~~l~~ 69 (190)
-.|+.+.|+.|++..-.+..
T Consensus 3 ~Ly~~~~s~~s~~v~~~l~~ 22 (76)
T cd03053 3 KLYGAAMSTCVRRVLLCLEE 22 (76)
T ss_pred EEEeCCCChhHHHHHHHHHH
Confidence 34556779999888877754
No 289
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=32.84 E-value=44 Score=24.49 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=16.7
Q ss_pred HHHHHHHcCCCCCCeeeeeeecCC
Q psy8729 114 RQSLASLYNVHGIPSLILLAVEAG 137 (190)
Q Consensus 114 ~~~~~~~~~v~~~P~~~l~~id~~ 137 (190)
+...+..+|+.++|++++ -|.+
T Consensus 158 ~~~~a~~~gv~g~Ptfvv--~~~~ 179 (193)
T cd03025 158 DQKLARELGINGFPTLVL--EDDN 179 (193)
T ss_pred HHHHHHHcCCCccCEEEE--EeCC
Confidence 345567789999999999 6544
No 290
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=31.91 E-value=1.7e+02 Score=20.18 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=36.6
Q ss_pred EEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC
Q psy8729 47 VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR 90 (190)
Q Consensus 47 ~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~ 90 (190)
..++.|--.-.+...++++.+.++++++... +++.+|.|.-|+
T Consensus 22 ~~IvAFaee~dpdG~eFl~ilk~vA~~nt~n-p~LsiIWIDPD~ 64 (120)
T cd03074 22 IHIVAFAEEEDPDGYEFLEILKEVARDNTDN-PDLSIIWIDPDD 64 (120)
T ss_pred ceEEEEeccCCccHHHHHHHHHHHHHhcCcC-CCceEEEECCcc
Confidence 4678888888899999999999999998754 789999998774
No 291
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=31.76 E-value=1.1e+02 Score=20.59 Aligned_cols=38 Identities=26% Similarity=0.551 Sum_probs=22.7
Q ss_pred EEEEEcCCChhhhhhhH-HHHH--HHHHHhhcCCcEEEEEee
Q psy8729 49 GLYFSAHWCPPCKAFTP-QLIE--TYRKLKEDGYQFEIIFVS 87 (190)
Q Consensus 49 lv~F~a~wC~~C~~~~~-~l~~--l~~~~~~~g~~~~ii~i~ 87 (190)
|-.||-+-||.|++++. .|.. ...++.+. .++.++...
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~-~~l~lvP~G 43 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFPVWTYEKLSDI-MNLTLVPFG 43 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHHHHHHhhccce-EEEEEEEEe
Confidence 45678999999999754 4543 23444443 345555443
No 292
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=30.85 E-value=88 Score=20.96 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=25.4
Q ss_pred EEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC---CCHHHHHHHHhCCC
Q psy8729 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD---RSESSYQSYLSGMP 103 (190)
Q Consensus 52 F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d---~~~~~~~~~~~~~~ 103 (190)
|+.+.|.-|++....|.+ .| +.+-.++.- -+.+++..+++..+
T Consensus 1 Y~~~~C~t~rka~~~L~~-------~g--i~~~~~d~~k~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE-------NG--IEYEFIDYKKEPLSREELRELLSKLG 46 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH-------TT----EEEEETTTS---HHHHHHHHHHHT
T ss_pred CcCCCCHHHHHHHHHHHH-------cC--CCeEeehhhhCCCCHHHHHHHHHHhc
Confidence 567899999999888853 23 444455553 35677777777554
No 293
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=30.67 E-value=25 Score=19.92 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=16.5
Q ss_pred CCChhhhhhhHHHHHHHHHHhh
Q psy8729 55 HWCPPCKAFTPQLIETYRKLKE 76 (190)
Q Consensus 55 ~wC~~C~~~~~~l~~l~~~~~~ 76 (190)
=+|.||+.=.+.|.++.+++..
T Consensus 17 GkC~PCR~Gt~~l~~~l~~i~~ 38 (46)
T PF10589_consen 17 GKCTPCREGTRQLAEILEKIVR 38 (46)
T ss_dssp S--HHHHCCCCHHHHHHHHHTB
T ss_pred CCCCCcHhHHHHHHHHHHHHHc
Confidence 3689999999999888887743
No 294
>KOG2244|consensus
Probab=30.10 E-value=34 Score=30.42 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=34.5
Q ss_pred ccceeeeeccCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCC
Q psy8729 34 VTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRS 91 (190)
Q Consensus 34 ~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~ 91 (190)
+++.+.....+++++++....+.|..|.-+..+- .+..+.+.+. ++.|.+|.+
T Consensus 101 gqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnen-----fv~ikVDRE 156 (786)
T KOG2244|consen 101 GQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNEN-----FVKIKVDRE 156 (786)
T ss_pred hHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhh-----hhhhccChh
Confidence 3444444445899999999988899998765422 2345555544 677777744
No 295
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=27.70 E-value=1.3e+02 Score=23.69 Aligned_cols=72 Identities=15% Similarity=0.350 Sum_probs=37.5
Q ss_pred EEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc-c--cCCchhHHHHHHHcCC
Q psy8729 47 VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA-I--PYASETRQSLASLYNV 123 (190)
Q Consensus 47 ~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~v 123 (190)
.||=.|.+--|..|-..-..|.++.++ ++ +++.+...+ |=+-.+|.- + ...-+-+....+.|+.
T Consensus 43 ~VVELfTSQGCsSCPPAd~~l~k~a~~-----~~--vlALsyhVd------YWdYlGWkDtlar~enTeRQ~aY~~a~g~ 109 (261)
T COG5429 43 GVVELFTSQGCSSCPPADANLAKLADD-----PG--VLALSYHVD------YWDYLGWKDTLARKENTERQRAYARAFGA 109 (261)
T ss_pred eEEEEeecCCcCCCChHHHHHHHhccC-----CC--EEEEEEeec------ccccCCccccccchhhhHHHHHHHHhhcc
Confidence 344446688899998887777655443 23 555543211 122223311 1 0011114566777887
Q ss_pred CC--CCeeee
Q psy8729 124 HG--IPSLIL 131 (190)
Q Consensus 124 ~~--~P~~~l 131 (190)
.+ +|..++
T Consensus 110 ~~vyTPQavv 119 (261)
T COG5429 110 RGVYTPQAVV 119 (261)
T ss_pred CCCCCchhee
Confidence 65 566666
No 296
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=24.09 E-value=41 Score=21.77 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=38.7
Q ss_pred EcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeee
Q psy8729 53 SAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILL 132 (190)
Q Consensus 53 ~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~ 132 (190)
-+...+.+......++.+.+.+.+. .+++=.|++-. ++++++.+++.++||++-
T Consensus 4 V~g~~~~s~~a~~~l~~l~~~~l~~--~~~LeVIDv~~-----------------------~P~lAe~~~ivAtPtLik- 57 (82)
T PF07689_consen 4 VAGRTPSSERAIENLRRLCEEYLGG--RYELEVIDVLE-----------------------QPELAEEDRIVATPTLIK- 57 (82)
T ss_dssp ESSBHHHHHHHHHHHHHHHHCHCTT--TEEEEEEETTT-----------------------SHSHHTTTEEECHHHHHT-
T ss_pred ECCCChHHHHHHHHHHHHHHhhCCC--cEEEEEEEccc-----------------------CHhHHhHCCeeecceEee-
Confidence 3444566777788888877765443 45655566554 357788999999999876
Q ss_pred eecC
Q psy8729 133 AVEA 136 (190)
Q Consensus 133 ~id~ 136 (190)
..+
T Consensus 58 -~~P 60 (82)
T PF07689_consen 58 -ESP 60 (82)
T ss_dssp -TSS
T ss_pred -ccC
Confidence 544
No 297
>PRK15113 glutathione S-transferase; Provisional
Probab=21.23 E-value=2e+02 Score=21.51 Aligned_cols=56 Identities=21% Similarity=0.186 Sum_probs=29.6
Q ss_pred EEEEEEcC--CChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCC
Q psy8729 48 IGLYFSAH--WCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYA 110 (190)
Q Consensus 48 vlv~F~a~--wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~ 110 (190)
.+..++.+ .|+.|++..-.+.+. |..++++.++....+.....|.+.++.-.+|.+
T Consensus 5 ~~~Ly~~~~~~s~~~~rv~~~l~e~-------gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L 62 (214)
T PRK15113 5 AITLYSDAHFFSPYVMSAFVALQEK-------GLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTL 62 (214)
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHc-------CCCCeEEEeCCCCccccCHHHHhcCCCCCCCEE
Confidence 34444543 599998877766432 345677777654332222345554444344444
No 298
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=20.59 E-value=76 Score=19.07 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=12.9
Q ss_pred cCCChhhhhhhHHHHH
Q psy8729 54 AHWCPPCKAFTPQLIE 69 (190)
Q Consensus 54 a~wC~~C~~~~~~l~~ 69 (190)
.++|+.|.+..-.|..
T Consensus 13 ~s~sp~~~~v~~~L~~ 28 (72)
T cd03054 13 PSLSPECLKVETYLRM 28 (72)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 3789999999888853
No 299
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=20.41 E-value=31 Score=27.71 Aligned_cols=9 Identities=33% Similarity=1.276 Sum_probs=6.9
Q ss_pred cCCChhhhh
Q psy8729 54 AHWCPPCKA 62 (190)
Q Consensus 54 a~wC~~C~~ 62 (190)
..|||.|+.
T Consensus 265 t~~CP~CQ~ 273 (273)
T COG0266 265 TFYCPVCQK 273 (273)
T ss_pred CEeCCCCCC
Confidence 478999974
Done!