RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8729
(190 letters)
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 145 bits (367), Expect = 3e-45
Identities = 49/131 (37%), Positives = 69/131 (52%), Gaps = 6/131 (4%)
Query: 35 TTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESS 94
++ +IG YFSAHWCPPC+ FTP L + Y +L +D FEIIFVSSDRSE
Sbjct: 16 EVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDD 75
Query: 95 YQSYLS--GMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELS 152
Y+ W AIPY S ++ + Y + GIP+L+++ + G +I+ R E+
Sbjct: 76 MFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKD--GT--LISMNGRGEVQ 131
Query: 153 EDPDGEFFPWP 163
F W
Sbjct: 132 SLGPRAFQNWA 142
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 142 bits (361), Expect = 3e-44
Identities = 55/121 (45%), Positives = 75/121 (61%), Gaps = 5/121 (4%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105
+++ YFSA WCPP + FTPQLIE Y K E FE++F + D E + Y + MPW
Sbjct: 29 KLVFFYFSASWCPPARGFTPQLIEFYDKFHESK-NFEVVFCTWDEEEDGFAGYFAKMPWL 87
Query: 106 AIPYA-SETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPP 164
A+P+A SE Q L+ +NV IP+LI + ++G DV+TT AR L +DP+GE FPW
Sbjct: 88 AVPFAQSEAVQKLSKHFNVESIPTLIGVDADSG---DVVTTRARATLVKDPEGEQFPWKD 144
Query: 165 K 165
Sbjct: 145 A 145
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 142 bits (359), Expect = 7e-44
Identities = 44/119 (36%), Positives = 75/119 (63%), Gaps = 5/119 (4%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105
+ + YFSA WCPP +AFTPQLI+ Y+ + FE++ +S D S ++ Y + MPW
Sbjct: 29 KTVFFYFSASWCPPSRAFTPQLIDFYKAHA-EKKNFEVMLISWDESAEDFKDYYAKMPWL 87
Query: 106 AIPYA-SETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWP 163
A+P+ + + L + ++V IP+L+ + ++G ++ITT+AR + +DP+ + FPWP
Sbjct: 88 ALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSG---NIITTQARTMVVKDPEAKDFPWP 143
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 142 bits (359), Expect = 1e-43
Identities = 55/120 (45%), Positives = 72/120 (60%), Gaps = 5/120 (4%)
Query: 47 VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA 106
+ YFSA WCPPC+ FTPQL+E Y K D FEII S D E + +Y + MPW +
Sbjct: 50 TVFFYFSASWCPPCRGFTPQLVEFYEKHH-DSKNFEIILASWDEEEDDFNAYYAKMPWLS 108
Query: 107 IPYA-SETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPK 165
IP+A ++L Y+V IP+LI L + G D +TT ARH L++DP GE FPW +
Sbjct: 109 IPFANRNIVEALTKKYSVESIPTLIGLNADTG---DTVTTRARHALTQDPMGEQFPWRDE 165
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 140 bits (356), Expect = 2e-43
Identities = 50/119 (42%), Positives = 68/119 (57%), Gaps = 5/119 (4%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105
+ + LYFSA WCPPC+ FTP L E Y K FE++ +S D +ES + Y MPW
Sbjct: 29 KTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAK-NFEVVLISWDENESDFHDYYGKMPWL 87
Query: 106 AIPYASETRQS-LASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWP 163
A+P+ + S L + V IP+LI + + G +I T+AR + EDPDG FPWP
Sbjct: 88 ALPFDQRSTVSELGKTFGVESIPTLITINADTG---AIIGTQARTRVIEDPDGANFPWP 143
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW
YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 78.9 bits (195), Expect = 3e-19
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105
+V+ + F+ + A L E Y K G FEI +S D E +++ +PW
Sbjct: 36 KVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLDGDEHFWKTSADNLPWV 93
Query: 106 AIPYASETRQSLASLYNVHGIPSLILL 132
+ A+ S SLYNV +PS+ L+
Sbjct: 94 CVRDANGAYSSYISLYNVTNLPSVFLV 120
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 75.5 bits (186), Expect = 5e-18
Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 8/92 (8%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIET---YRKLKEDGYQFEIIFVSSDRSESSYQSYLS-- 100
Q L+F C C+ F E ++ ++ + D + + +
Sbjct: 28 QYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT--LRVLAIYPDENREEWATKAVYM 85
Query: 101 GMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
W + + LY++ P++ LL
Sbjct: 86 PQGWI-VGWNKAGDIRTRQLYDIRATPTIYLL 116
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 73.1 bits (180), Expect = 5e-17
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMPWPAI 107
+ F C C+ TP L++TY K+ G F I VS+DR E ++ + W +
Sbjct: 34 VDFWFAGCSWCRKETPYLLKTYNAFKDKG--FTIYGVSTDRREEDWKKAIEEDKSYWNQV 91
Query: 108 PYASETRQSLASLYNVHGIPSLILL 132
+ + + Y + G P +IL+
Sbjct: 92 LLQKDDVKDVLESYCIVGFPHIILV 116
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 71.6 bits (176), Expect = 1e-16
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKE-DGYQFEIIFVSSDRSESSYQSYLS--GM 102
+ L+ + C C L + + +++ + D ++ + +
Sbjct: 32 EYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAK 91
Query: 103 PWPAIPYASETRQSLASLYNVHGIPSLILL 132
W Y E +LY++ IP+L LL
Sbjct: 92 EWT-NGYDKELVIKNKNLYDLRAIPTLYLL 120
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 70.1 bits (172), Expect = 7e-16
Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMPWPAI 107
L+F C C+ TP+L + + K + G ++ + +R + + ++ +
Sbjct: 36 LFFWDSQCGHCQQETPKLYDWWLKNRAKG--IQVYAANIERKDEEWLKFIRSKKIGGWLN 93
Query: 108 PYASETRQSLASLYNVHGIPSLILL 132
S+ Y+++ P L +L
Sbjct: 94 VRDSKNHTDFKITYDIYATPVLYVL 118
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 70.0 bits (172), Expect = 8e-16
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMP 103
+ I + A WC PC+ P L E K + +S D+++ ++++ ++ +
Sbjct: 31 KYIYIDVWATWCGPCRGELPALKELEEKYAGKD--IHFVSLSCDKNKKAWENMVTKDQLK 88
Query: 104 WPAIPYASETRQSLASLYNVHGIPSLILL 132
I T ++ Y ++GIP ILL
Sbjct: 89 G--IQLHMGTDRTFMDAYLINGIPRFILL 115
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 69.7 bits (171), Expect = 9e-16
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMPWPAI 107
L F A WC P +L ++ K++ F ++ +S D ++++ + + W +
Sbjct: 38 LNFWASWCDPQPEANAELKRLNKEYKKNK-NFAMLGISLDIDREAWETAIKKDTLSWDQV 96
Query: 108 PYASETRQSLASLYNVHGIPSLILL 132
+ A Y + +P+ ILL
Sbjct: 97 CDFTGLSSETAKQYAILTLPTNILL 121
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 68.8 bits (169), Expect = 3e-15
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMP 103
V+ L F A WC PC+ P + + K K G F+++ V+ D +L+
Sbjct: 29 SVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG--FQVVAVNLDAKTGDAMKFLAQVPAE 86
Query: 104 WPAIPYASETRQSLASLYNVHGIPSLILL 132
+ A + + LY V G+P+ L+
Sbjct: 87 FTV---AFDPKGQTPRLYGVKGMPTSFLI 112
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 67.8 bits (166), Expect = 5e-15
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 50 LYFSAHWCPPC--KAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMPWP 105
+ F A W K +L E Y+K K++ ++ +S D + ++ + + W
Sbjct: 38 INFWASWNDSISQKQSNSELREIYKKYKKNK-YIGMLGISLDVDKQQWKDAIKRDTLDWE 96
Query: 106 AIPYASETRQSLASLYNVHGIPSLILL 132
+ +A Y+++ IP+ ILL
Sbjct: 97 QVCDFGGLNSEVAKQYSIYKIPANILL 123
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 67.7 bits (166), Expect = 5e-15
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMP 103
+ + L F WC PCK P + Y+ K G EI+ V+ S+ + +++ G+
Sbjct: 27 KGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESKIAVHNFMKSYGVN 84
Query: 104 WPAIPYASETRQSLASLYNVHGIPSLILL 132
+ P +T + + Y+V +P+ L+
Sbjct: 85 F---PVVLDTDRQVLDAYDVSPLPTTFLI 110
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 64.3 bits (157), Expect = 8e-14
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 5/86 (5%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMPWP-A 106
L F A + +A QL K D + +S D ES + + +
Sbjct: 37 LNFWAAYDAESRARNVQLANEVNKFGPDK--IAMCSISMDEKESIFTETVKIDKLDLSTQ 94
Query: 107 IPYASETRQSLASLYNVHGIPSLILL 132
L Y++ L+
Sbjct: 95 FHEGLGKESELYKKYDLRKGFKNFLI 120
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 62.7 bits (153), Expect = 5e-13
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMP 103
+V+ L F+A WC C+ P + + +D F +I + D ++ G+
Sbjct: 34 KVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVT 93
Query: 104 WPAIPYASETRQSLASLYNVH--GIPSLILL 132
+P + + + Y + GI +L+
Sbjct: 94 YPL---GLDPGADIFAKYALRDAGITRNVLI 121
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 60.4 bits (147), Expect = 4e-12
Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-SESSYQSYLS--GM 102
+V + F CP C + P++I+T K F+++ V+ S + Y+ G+
Sbjct: 29 KVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN--FQVLAVAQPIDPIESVRQYVKDYGL 86
Query: 103 PWPAIPYASETRQSLASLYNVHGIPSLILL 132
P+ + +++ + P+ +L+
Sbjct: 87 PFTV---MYDADKAVGQAFGTQVYPTSVLI 113
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 60.0 bits (146), Expect = 4e-12
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 54 AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR----SESSYQSYLSGMPWPAIPY 109
A WC C A P E ++ +D + VS SE+ ++++ G+ + +P
Sbjct: 31 ASWCSICLASLPDTDEIAKEAGDDY--VVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPV 88
Query: 110 ASETRQSLASLYNVHGIPSLILL 132
+ L Y V P+ +
Sbjct: 89 LVDPSGKLLETYGVRSYPTQAFI 111
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 59.3 bits (144), Expect = 1e-11
Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 54 AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMPWPAI--PY 109
A WCPPC++ P +++ + G F + ++ + + ++Y+ G+ +P +
Sbjct: 43 ATWCPPCRSEIPDMVQVQKTWASRG--FTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATP 100
Query: 110 ASETRQSLASLYNVHGIPSLILL 132
+ + GIP+ ++
Sbjct: 101 ELIRAFNGYIDGGITGIPTSFVI 123
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 58.9 bits (143), Expect = 1e-11
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 54 AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-SESSYQSYLS--GMPWPAIPYA 110
A WCPPC+ P ++ + F ++ VS D + + + + G P
Sbjct: 37 ATWCPPCREEIPSMMRLNAAMAGKP--FRMLCVSIDEGGKVAVEEFFRKTGFTL---PVL 91
Query: 111 SETRQSLASLYNVHGIPSLILL 132
+ + + LY G+P ++
Sbjct: 92 LDADKRVGKLYGTTGVPETFVI 113
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 56.9 bits (138), Expect = 6e-11
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVS---SDRSESSYQSYLS-- 100
Q L+F WCPPCK PQ Y D +++ V+ S++++ + ++
Sbjct: 35 QKTILHFWTSWCPPCKKELPQFQSFYDAHPSDS--VKLVTVNLVNSEQNQQVVEDFIKAN 92
Query: 101 GMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
+ +P +++ L Y++ IP+ LL
Sbjct: 93 KLTFPI---VLDSKGELMKEYHIITIPTSFLL 121
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 56.5 bits (137), Expect = 7e-11
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMP 103
+ L+F WCP C A P L + + +++ + QS++S +
Sbjct: 25 KPAVLWFWTPWCPFCNAEAPSLSQVAAANPA----VTFVGIATRADVGAMQSFVSKYNLN 80
Query: 104 WPAIPYASETRQSLASLYNVHGIPSLILL 132
+ + ++ + + YNV P+ +
Sbjct: 81 FTNL---NDADGVIWARYNVPWQPAFVFY 106
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 58.5 bits (141), Expect = 1e-10
Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS-----DRSESSYQSYLS 100
+V+ + F A+ C C+ P ++ Y+ K+ G +I V + ++ + +
Sbjct: 83 KVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSG--LAVIGVHTPEYAFEKVPGNVAKGAA 140
Query: 101 --GMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
G+ + P A + + + Y P+ L+
Sbjct: 141 NLGISY---PIALDNNYATWTNYRNRYWPAEYLI 171
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 56.2 bits (136), Expect = 1e-10
Identities = 11/87 (12%), Positives = 33/87 (37%), Gaps = 6/87 (6%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105
+++ + F A WCP C+ P + + + ++ V+ ++ + +
Sbjct: 42 KIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGD--LVVLAVNVEKRFPEKYRRA-PVSF- 97
Query: 106 AIPYASETRQSLASLYNVHGIPSLILL 132
+ S+ + Y + +P ++
Sbjct: 98 --NFLSDATGQVQQRYGANRLPDTFIV 122
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double
disulfide bridge, membrane protein; 1.60A
{Bradyrhizobium japonicum} SCOP: c.47.1.10
Length = 186
Score = 56.3 bits (136), Expect = 2e-10
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 54 AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-SESSYQSYLS--GMPWPAIPYA 110
A WC PC+ P L E KL FE++ ++ D +++L +
Sbjct: 69 ATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDPEKPKTFLKEANLTRLGYFND 126
Query: 111 SETR--QSLASLYNVHGIPSLILL 132
+ + Q L ++ G+P+ +L+
Sbjct: 127 QKAKVFQDLKAIGRALGMPTSVLV 150
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 54.7 bits (132), Expect = 4e-10
Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMP 103
V + A WC PC+ P + + Y+ K+ +++ ++ D S++ ++L +
Sbjct: 25 PVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGS--VDMVGIALDTSDNI-GNFLKQTPVS 81
Query: 104 WPAIPYASETRQSLASLY--NVHGIPSLILL 132
+P Y ++ Y V +P ++
Sbjct: 82 YPIWRYTGANSRNFMKTYGNTVGVLPFTVVE 112
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest CE structural genomics; HET: MSE;
2.20A {Corynebacterium glutamicum}
Length = 160
Score = 54.1 bits (130), Expect = 8e-10
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 14/99 (14%)
Query: 46 QVIGLYFSAHWCPPCKAFT-PQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS---- 100
+V+ + CP C PQ + +R + E ++I + S + +
Sbjct: 31 KVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ--VQVIGLHSVFEHHDVMTPEALKVF 88
Query: 101 ----GMPWPAI---PYASETRQSLASLYNVHGIPSLILL 132
G+ +P P + S Y + G PS+IL
Sbjct: 89 IDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILA 127
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure initiative;
1.76A {Thermus thermophilus}
Length = 154
Score = 53.9 bits (130), Expect = 9e-10
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMPWPAIPY 109
F A WC CKA P L +E G F +I + Y+ P +
Sbjct: 37 FWASWCTVCKAEFPGLHRVA---EETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLAS 93
Query: 110 ASETRQSLASLYNVHGIP 127
+ +A+ + V G P
Sbjct: 94 DRDRPHEVAARFKVLGQP 111
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural genomics,
PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 53.6 bits (129), Expect = 1e-09
Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 13/98 (13%)
Query: 46 QVIGLYFSAHWCPPCKAFT-PQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS---- 100
+VI + CP C P + ED ++ + + + +S
Sbjct: 29 KVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK--VAVLGLHTVFEHHEAMTPISLKAF 86
Query: 101 ----GMPWPAI--PYASETRQSLASLYNVHGIPSLILL 132
+ +P + Y + G PSL+L+
Sbjct: 87 LHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLI 124
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 52.9 bits (127), Expect = 2e-09
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 21/104 (20%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105
V+ L+F A WCP C L K +E +I + +E+ L+ +P
Sbjct: 38 DVVILWFMAAWCPSCVYMADLLDRLTEKYRE----ISVIAIDFWTAEALKALGLNKPGYP 93
Query: 106 AIPYASETRQ-----------------SLASLYNVHGIPSLILL 132
R+ SL +NV I ++++
Sbjct: 94 PPDTPEMFRKFIANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIM 137
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 51.1 bits (123), Expect = 7e-09
Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105
+ L+F A WCP C+ P + + E + V+ + Q +++ P
Sbjct: 26 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPE----VTFVGVAGLDQVPAMQEFVNKYPVK 81
Query: 106 AIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHE 150
++T S+ + + V P+ V+ G +DV+ +
Sbjct: 82 TFTQLADTDGSVWANFGVTQQPAYAF--VDPHGNVDVVRGRMSQD 124
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 50.5 bits (121), Expect = 2e-08
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-----RSESSYQSYLS 100
+ + F A WCP C + Q + + K +I V+S + + +Q + +
Sbjct: 39 KPTLIKFWASWCPLCLSELGQAEKWAQDAKFSS--ANLITVASPGFLHEKKDGEFQKWYA 96
Query: 101 GMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
G+ +P +P ++ ++A N+ PS L+
Sbjct: 97 GLNYPKLPVVTDNGGTIAQNLNISVYPSWALI 128
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 49.6 bits (119), Expect = 3e-08
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 9/92 (9%)
Query: 46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS-----DRSESSYQSYLS 100
+ ++F + C CK PQ+ E K ++ Q ++ V D + +
Sbjct: 30 KPTLIHFWSISCHLCKEAMPQVNEFRDKYQD---QLNVVAVHMPRSEDDLDPGKIKETAA 86
Query: 101 GMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
P ++ +L + +P+ +
Sbjct: 87 EHDIT-QPIFVDSDHALTDAFENEYVPAYYVF 117
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 5e-08
Identities = 42/214 (19%), Positives = 74/214 (34%), Gaps = 50/214 (23%)
Query: 2 VKESDQLYNNLLKPGGSKGAKKTYNIGLA-----EGTVTTKVLSYIESCQV----IGLYF 52
+K S + + L++ + A+K + GL E T Y+ S + IG+
Sbjct: 188 IKFSAETLSELIRT--TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 53 SAHWCPPCKA--FTP-QLIETYRKLKEDGYQFEII---FVS-SDRSESSYQSYLSGMPW- 104
AH+ K FTP +L + G+ ++ ++ +D ES + S +
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGAT--GHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 105 -----------PAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVIT--TEARHEL 151
P + SL N G+PS +L++ + V + L
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILED--SLENNEGVPSP-MLSISNLTQEQVQDYVNKTNSHL 360
Query: 152 SEDPDGEFFPWPPKLVNVLSPRHC-----PK-LY 179
E LVN ++ P+ LY
Sbjct: 361 PAGKQVEI-----SLVN--GAKNLVVSGPPQSLY 387
Score = 47.7 bits (113), Expect = 8e-07
Identities = 49/228 (21%), Positives = 72/228 (31%), Gaps = 80/228 (35%)
Query: 7 QL--YNNLLK-----PG----GSKGAKKTYNIGLAEGTVTTKVLS--------YIESCQV 47
QL Y K PG KGA G ++G VT ++ ++ +
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGA-----TGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 48 IGLYFS----AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSES--SYQSYLSG 101
I + F + P + P ++E S + +E S +S
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILED----------------SLENNEGVPSPMLSISN 343
Query: 102 MPWPAI-PYASETRQSLA-------SLYN------VHGIP-SLILLA-----VEAGGRLD 141
+ + Y ++T L SL N V G P SL L +A LD
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 142 VITTEARHELSE---DPDGEFFPWPPKLVNVLSPRHCPKLYDSPALIL 186
++R SE F P V SP H L + LI
Sbjct: 404 ----QSRIPFSERKLKFSNRFLP-------VASPFHSHLLVPASDLIN 440
Score = 28.1 bits (62), Expect = 2.3
Identities = 14/118 (11%), Positives = 26/118 (22%), Gaps = 50/118 (42%)
Query: 63 F-TPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP-YASET----RQS 116
F + L+ + +D + + F + D + IP Y + R
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKD---------I------QIPVYDTFDGSDLRVL 471
Query: 117 LASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKLVNVLSPRH 174
S+ ++ D I W H
Sbjct: 472 SGSI-----SERIV----------DCIIRLPVK------------W-ETTTQ-FKATH 500
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 48.0 bits (115), Expect = 5e-08
Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 27/92 (29%)
Query: 40 SYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL 99
+YIE Q++ L+ C C ++ + E+ E I +
Sbjct: 13 TYIEEQQLVLLFIKTENCGVCDVMLRKVNY----VLENYNYVEKIEILLQDM-------- 60
Query: 100 SGMPWPAIPYASETRQSLASLYNVHGIPSLIL 131
Q +A Y V P+++L
Sbjct: 61 ---------------QEIAGRYAVFTGPTVLL 77
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 49.0 bits (117), Expect = 8e-08
Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 54 AHWCPPCKAFTPQLIETYRKLKEDGYQ----FEIIFVS-SDRSESSYQSYLS--GMPWPA 106
WC PC++ + L + +L+ G ++ ++ D S Q +++ G+ +P+
Sbjct: 68 GQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPS 127
Query: 107 IPYASETRQSLASLYNVHGIPSLILL 132
I + IP+ I+L
Sbjct: 128 IYDPPFMTAASLGGVPASVIPTTIVL 153
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 46.9 bits (111), Expect = 2e-07
Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 24/115 (20%)
Query: 20 GAKKTY--NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKED 77
A + + NI E T + ++ + + CP C+ F L + K
Sbjct: 2 NAMEQFLDNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETK-- 59
Query: 78 GYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
I F++S+ Q+ S Y + +P + +
Sbjct: 60 ---AHIYFINSEEPSQ-----------------LNDLQAFRSRYGIPTVPGFVHI 94
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 45.5 bits (108), Expect = 7e-07
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 24/81 (29%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F CP C +L KE +F I + + ++
Sbjct: 33 FKTDTCPYCVEMQKELSYVS---KEREGKFNIYYARLEEEKN------------------ 71
Query: 112 ETRQSLASLYNVHGIPSLILL 132
LA Y+ + +P+ + L
Sbjct: 72 ---IDLAYKYDANIVPTTVFL 89
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 40.0 bits (94), Expect = 5e-05
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 25/97 (25%)
Query: 36 TKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSY 95
T + + ++I LYF W PCKA + + + + F+S D E+
Sbjct: 12 TYLTTTAAGDKLIVLYFHTSWAEPCKALKQ----VFEAISNEPSNSNVSFLSIDADEN-- 65
Query: 96 QSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
++ L+ + +P I++
Sbjct: 66 -------------------SEISELFEISAVPYFIII 83
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Length = 167
Score = 40.0 bits (93), Expect = 1e-04
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP 108
L WCP C+ L + E+ +S R+E + L+ AIP
Sbjct: 59 LVAGEMWCPDCQINLAAL----DFAQRLQPNIELAIISKGRAEDDLRQRLALERI-AIP 112
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 38.6 bits (90), Expect = 2e-04
Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 21/106 (19%)
Query: 27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFV 86
I E + + +++ + WC PCK + + + F + +
Sbjct: 9 IAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKM 68
Query: 87 SSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
++ E L Y VH P+L+ +
Sbjct: 69 DMEKGEG---------------------VELRKKYGVHAYPTLLFI 93
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 38.9 bits (90), Expect = 2e-04
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPY 109
+ WC CKA P+ E+ ++ E + F ++ + + G P I +
Sbjct: 51 VIIHKSWCGACKALKPKFAES-TEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILF 109
Query: 110 ASETRQSLASLYNVHGIP 127
+ + + N +G P
Sbjct: 110 LDPSGKVHPEIINENGNP 127
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 38.6 bits (90), Expect = 2e-04
Identities = 6/84 (7%), Positives = 22/84 (26%), Gaps = 31/84 (36%)
Query: 52 FSAHWCPPCKAFTP---QLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP 108
P +L+ + + +++ ++S
Sbjct: 43 SDPRRTPEVSDNPVMIAELLREF-----PQFDWQVAVADLEQS----------------- 80
Query: 109 YASETRQSLASLYNVHGIPSLILL 132
+++ +NV P+ ++
Sbjct: 81 ------EAIGDRFNVRRFPATLVF 98
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 38.6 bits (90), Expect = 2e-04
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 23/84 (27%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKL--KEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAI 107
L + CP C PQLI+ +++ + + + + S +
Sbjct: 36 LAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAA-------------- 81
Query: 108 PYASETRQSLASLYNVHGIPSLIL 131
+ + V G P+L+
Sbjct: 82 -------RLEMNKAGVEGTPTLVF 98
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 37.7 bits (87), Expect = 4e-04
Identities = 7/44 (15%), Positives = 12/44 (27%), Gaps = 1/44 (2%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSES 93
L F C C + ++ Y E G + +
Sbjct: 23 LMFEQPGCLYCARWDAEIAPQYPLTDE-GRAAPVQRLQMRDPLP 65
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 36.9 bits (86), Expect = 6e-04
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 26/97 (26%)
Query: 36 TKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSY 95
++ E + I + F+A WC PCK P Y ++IF+ D
Sbjct: 15 AQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSND-----YAGKVIFLKVDVDAV-- 67
Query: 96 QSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
++A + +P+ +
Sbjct: 68 -------------------AAVAEAAGITAMPTFHVY 85
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 38.3 bits (89), Expect = 6e-04
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 23/81 (28%)
Query: 51 YFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYA 110
F A WC CK F P+ + LK+ + + + +
Sbjct: 38 EFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSA------------------- 78
Query: 111 SETRQSLASLYNVHGIPSLIL 131
LAS ++V G P++ +
Sbjct: 79 ----SVLASRFDVSGYPTIKI 95
Score = 35.6 bits (82), Expect = 0.005
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 23/93 (24%)
Query: 40 SYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL 99
+ +I + F A WC CK P+ + ++L + I D +
Sbjct: 142 EVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRS--PPIPLAKVDATAE------ 193
Query: 100 SGMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
LA ++V G P+L +
Sbjct: 194 ---------------TDLAKRFDVSGYPTLKIF 211
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 37.5 bits (87), Expect = 6e-04
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 20/83 (24%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPY 109
L A WC CK F T+ + + + + ++ + + Q
Sbjct: 36 LDLYADWCVACKEFEK---YTFSDPQVQKALADTVLLQANVTANDAQD------------ 80
Query: 110 ASETRQSLASLYNVHGIPSLILL 132
+L NV G+P+++
Sbjct: 81 -----VALLKHLNVLGLPTILFF 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 38.2 bits (89), Expect = 7e-04
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 28/84 (33%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKL-KEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP 108
YF + C TP L L + QF + + D
Sbjct: 31 FYFWSERSQHCLQLTPIL----ESLAAQYNGQFILAKLDCDAE----------------- 69
Query: 109 YASETRQSLASLYNVHGIPSLILL 132
Q +A+ + + IP++ L
Sbjct: 70 ------QMIAAQFGLRAIPTVYLF 87
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 36.6 bits (85), Expect = 9e-04
Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 27/80 (33%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F + CP CK +++ K Q I V S+
Sbjct: 26 FHKNLCPHCKNMEK-VLD---KFGARAPQVAISSVDSEAR-------------------- 61
Query: 112 ETRQSLASLYNVHGIPSLIL 131
L +P+L+
Sbjct: 62 ---PELMKELGFERVPTLVF 78
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 36.1 bits (84), Expect = 0.001
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 26/81 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PCK +P +L + ++ + D E
Sbjct: 27 FFATWCGPCKMISP----KLVELSTQ-FADNVVVLKVDVDEC------------------ 63
Query: 112 ETRQSLASLYNVHGIPSLILL 132
+ +A YN+ +P+ + L
Sbjct: 64 ---EDIAMEYNISSMPTFVFL 81
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 36.7 bits (85), Expect = 0.001
Identities = 11/81 (13%), Positives = 19/81 (23%), Gaps = 28/81 (34%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PC ++ + + V D
Sbjct: 47 FGAVWCKPCNKIKE----YFKNQLN---YYYVTLVDIDVDIH------------------ 81
Query: 112 ETRQSLASLYNVHGIPSLILL 132
L +N+ +P+
Sbjct: 82 ---PKLNDQHNIKALPTFEFY 99
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 35.8 bits (83), Expect = 0.001
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 28/81 (34%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PCK P +++L E +++ IFV D +
Sbjct: 40 FFATWCGPCKTIAP----LFKELSE---KYDAIFVKVDVDKL------------------ 74
Query: 112 ETRQSLASLYNVHGIPSLILL 132
+ A YN+ +P+ I +
Sbjct: 75 ---EETARKYNISAMPTFIAI 92
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 35.0 bits (81), Expect = 0.002
Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F++ CP C + E K++ + +I D
Sbjct: 8 FTSPTCPYCPMAIEVVDE----AKKE-FGDKIDVEKIDIMVD------------------ 44
Query: 112 ETRQSLASLYNVHGIPSLIL 131
+ A Y + +P++ +
Sbjct: 45 ---REKAIEYGLMAVPAIAI 61
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP:
c.47.1.1
Length = 112
Score = 35.0 bits (81), Expect = 0.003
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 42 IESCQVIGLYFSAHWCPPCKAFTP---QLIETYRKLK 75
I +++ + F A WC PCK P + +TY K+
Sbjct: 23 ISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMV 59
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 35.4 bits (81), Expect = 0.004
Identities = 8/78 (10%), Positives = 22/78 (28%), Gaps = 2/78 (2%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPY 109
+ C +A + + ++ Q + I ++ + G P I +
Sbjct: 49 VIHHLEDCQYSQALKKVFAQN--EEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPRIMF 106
Query: 110 ASETRQSLASLYNVHGIP 127
+ A + +
Sbjct: 107 VDPSLTVRADIAGRYSNR 124
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 34.6 bits (80), Expect = 0.004
Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 33/86 (38%)
Query: 50 LYFSAHWCPPCKAFTP---QLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA 106
+ FSA WC PCK P L E Y +IF+ D +
Sbjct: 25 VDFSATWCGPCKMIKPFFHSLSEKYSN---------VIFLEVDVDDC------------- 62
Query: 107 IPYASETRQSLASLYNVHGIPSLILL 132
Q +AS V +P+
Sbjct: 63 --------QDVASESEVKSMPTFQFF 80
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 34.2 bits (79), Expect = 0.005
Identities = 12/86 (13%), Positives = 22/86 (25%), Gaps = 33/86 (38%)
Query: 50 LYFSAHWCPPCKAFTP---QLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA 106
+ F+ C PC P + Y + +F+ D +
Sbjct: 26 VKFTMRGCGPCLRIAPAFSSMSNKYPQ---------AVFLEVDVHQC------------- 63
Query: 107 IPYASETRQSLASLYNVHGIPSLILL 132
Q A+ N+ P+
Sbjct: 64 --------QGTAATNNISATPTFQFF 81
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 34.9 bits (80), Expect = 0.005
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY-LSG 101
+ +V+ L F P C L +T L + I V D++ Q + +S
Sbjct: 21 TAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSK---MAAIYLVDVDQTAVYTQYFDISY 77
Query: 102 MP 103
+P
Sbjct: 78 IP 79
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 35.9 bits (82), Expect = 0.006
Identities = 17/136 (12%), Positives = 37/136 (27%), Gaps = 26/136 (19%)
Query: 37 KVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQ 96
+++ + +V + F + W P + P+ R L I S D +
Sbjct: 555 ELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL-----INVGSVDCGQY--- 606
Query: 97 SYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPD 156
S + NV P + ++ + + +
Sbjct: 607 ------------------HSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLR 648
Query: 157 GEFFPWPPKLVNVLSP 172
+ P+ L+P
Sbjct: 649 SWGLGFLPQASIDLTP 664
Score = 34.0 bits (77), Expect = 0.023
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A W PP +A P RK ++ + D
Sbjct: 462 FFAPWSPPSRALLP----ELRKASTL-LYGQLKVGTLD---------------------C 495
Query: 112 ETRQSLASLYNVHGIPSLIL 131
+ L ++YN+ P+ ++
Sbjct: 496 TIHEGLCNMYNIQAYPTTVV 515
Score = 30.9 bits (69), Expect = 0.27
Identities = 18/103 (17%), Positives = 25/103 (24%), Gaps = 29/103 (28%)
Query: 29 LAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS 88
L T KVL V F A W P + F P+ R +K +
Sbjct: 662 LTPQTFNEKVLQGKTHWVVD---FYAPWSGPSQNFAPEFELLARMIKGK-----VRAGKV 713
Query: 89 DRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLIL 131
D + + PS+ L
Sbjct: 714 D---------------------CQAYPQTCQKAGIKAYPSVKL 735
Score = 27.4 bits (60), Expect = 3.2
Identities = 9/92 (9%), Positives = 26/92 (28%), Gaps = 26/92 (28%)
Query: 40 SYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL 99
+ + S ++ + F + P E +++ + + + +
Sbjct: 128 AAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDG-----LLRIGAVNCGDD------ 176
Query: 100 SGMPWPAIPYASETRQSLASLYNVHGIPSLIL 131
+ L + V+ PSL +
Sbjct: 177 ---------------RMLCRMKGVNSYPSLFI 193
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 34.3 bits (79), Expect = 0.006
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 33/94 (35%)
Query: 42 IESCQVIGLYFSAHWCPPCKAFTP---QLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY 98
ES ++ + F+A WC PC+ P L + ++F+ D E
Sbjct: 35 NESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN---------VLFLKVDTDEL----- 80
Query: 99 LSGMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
+S+AS + + +P+ + L
Sbjct: 81 ----------------KSVASDWAIQAMPTFMFL 98
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 33.8 bits (78), Expect = 0.007
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 33/84 (39%)
Query: 52 FSAHWCPPCKAFTP---QLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP 108
F A WC PC+ P L + + + F D ++
Sbjct: 26 FFAQWCGPCRNIAPKVEALAKEIPE---------VEFAKVDVDQN--------------- 61
Query: 109 YASETRQSLASLYNVHGIPSLILL 132
+ A+ Y+V +P+ + +
Sbjct: 62 ------EEAAAKYSVTAMPTFVFI 79
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 34.2 bits (79), Expect = 0.007
Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 27/91 (29%)
Query: 42 IESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSG 101
I+ + + F A WC PCK P L + + ++ FV D ES
Sbjct: 27 IKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP------DVRFVKCDVDES-------- 72
Query: 102 MPWPAIPYASETRQSLASLYNVHGIPSLILL 132
+A V +P+ +L
Sbjct: 73 -------------PDIAKECEVTAMPTFVLG 90
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 34.4 bits (79), Expect = 0.007
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 19/80 (23%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A+W C++F P + K G F + V R + +
Sbjct: 33 FFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDV--GR-------------YTDVS--- 74
Query: 112 ETRQSLASLYNVHGIPSLIL 131
TR +++ +P+LIL
Sbjct: 75 -TRYKVSTSPLTKQLPTLIL 93
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 34.4 bits (79), Expect = 0.007
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PC+ PQ L Q + + +
Sbjct: 71 FWAPWCGPCRQMAPQFQAAAATLAG---QVRLAKIDTQAH-------------------- 107
Query: 112 ETRQSLASLYNVHGIPSLIL 131
++A + + GIP+ IL
Sbjct: 108 ---PAVAGRHRIQGIPAFIL 124
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 33.8 bits (78), Expect = 0.008
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 33/94 (35%)
Query: 42 IESCQVIGLYFSAHWCPPCKAFTP---QLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY 98
S ++I + F+A WCPPCK P +L + + + F+ D E
Sbjct: 23 KGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN---------VTFLKVDVDEL----- 68
Query: 99 LSGMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
+++A +NV +P+ I L
Sbjct: 69 ----------------KAVAEEWNVEAMPTFIFL 86
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 34.4 bits (79), Expect = 0.008
Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 42/118 (35%)
Query: 27 IGLAEGTVTT---------KVLSYIESCQVIGLYFSAHWCPPCKAFTP---QLIETYRKL 74
I LA G V K+ +++ FSA WC P + P +L E Y
Sbjct: 19 IELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPS- 77
Query: 75 KEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
++F+ D E ++ + + P+ L
Sbjct: 78 --------LMFLVIDVDEL---------------------SDFSASWEIKATPTFFFL 106
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 33.8 bits (78), Expect = 0.008
Identities = 19/86 (22%), Positives = 26/86 (30%), Gaps = 33/86 (38%)
Query: 50 LYFSAHWCPPCKAFTP---QLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA 106
+ FSA WC P K P L E Y +IF+ D +
Sbjct: 36 VDFSATWCGPSKMIKPFFHSLSEKYSN---------VIFLEVDVDDC------------- 73
Query: 107 IPYASETRQSLASLYNVHGIPSLILL 132
Q +AS V +P+
Sbjct: 74 --------QDVASECEVKSMPTFQFF 91
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 33.9 bits (78), Expect = 0.010
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 27/97 (27%)
Query: 36 TKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSY 95
++ E+ +V+ + F+A WC PC+ P E +K +F+ D E
Sbjct: 27 AQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP------GAVFLKVDVDEL-- 78
Query: 96 QSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
+ +A YNV +P+ + +
Sbjct: 79 -------------------KEVAEKYNVEAMPTFLFI 96
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 34.6 bits (79), Expect = 0.010
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 12/39 (30%)
Query: 57 CPPCKAFTPQLIETYRKLKEDGYQFEII-----FVSSDR 90
CP CK + P+++E + + G +++ V SD+
Sbjct: 24 CPECKVYPPKIVERFSE----G---DVVCALCGLVLSDK 55
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae}
PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 33.4 bits (77), Expect = 0.011
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 42 IESCQVIGLYFSAHWCPPCKAFTP---QLIETYRKLK 75
I +++ + F A WC PCK P + E Y +
Sbjct: 21 IAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD 57
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 33.5 bits (77), Expect = 0.013
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 40 SYIESCQVIGLYFSAHWCPPCKAFTP---QLIETYRKLK 75
+ + + +F+A WC PCK ++ + +K
Sbjct: 32 NIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVK 70
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 33.9 bits (78), Expect = 0.013
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PC++F P ET + ++ FV +
Sbjct: 62 FWAPWCGPCRSFAPIFAETAAE-----RAGKVRFVKVNTEAE------------------ 98
Query: 112 ETRQSLASLYNVHGIPSLIL 131
+L++ + + IP+++L
Sbjct: 99 ---PALSTRFRIRSIPTIML 115
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 33.5 bits (77), Expect = 0.013
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 36 TKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIE 69
T + + ++ +++ + F+A WC PC+ P E
Sbjct: 19 THMANGKDTGKLVIIDFTASWCGPCRVIAPVFAE 52
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain
swapping, electron transport; 2.69A {Corynebacterium
ammoniagenes} SCOP: c.47.1.1
Length = 75
Score = 32.2 bits (74), Expect = 0.015
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 7/39 (17%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR 90
++ C C A T + L G + + +S D
Sbjct: 6 YTKPACVQCTA-------TKKALDRAGLAYNTVDISLDD 37
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 34.4 bits (78), Expect = 0.016
Identities = 21/94 (22%), Positives = 30/94 (31%), Gaps = 27/94 (28%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPY 109
+ F A WC CK P+ E KL +D I+ D
Sbjct: 375 IEFYAPWCGHCKNLEPKYKELGEKLSKDP---NIVIAKMD-------------------- 411
Query: 110 ASETRQSLASLYNVHGIPSLILLAVEAGGRLDVI 143
T + S Y V G P++ A +L+
Sbjct: 412 --ATANDVPSPYEVRGFPTIYF--SPANKKLNPK 441
Score = 32.9 bits (74), Expect = 0.050
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 36 TKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKED 77
+S S ++ + F A WC K P+ +LK
Sbjct: 12 ESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI 53
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 33.3 bits (76), Expect = 0.017
Identities = 6/36 (16%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 43 ESCQVIGLYFSAHWCPPCKAFTP---QLIETYRKLK 75
++ ++ ++F A W P C +L + ++
Sbjct: 30 KAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVS 65
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 32.8 bits (75), Expect = 0.018
Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 27/80 (33%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PC+ L K ++ F+ D ++
Sbjct: 30 FFATWCGPCQRLGQILPSIAEANK------DVTFIKVDVDKN------------------ 65
Query: 112 ETRQSLASLYNVHGIPSLIL 131
+ A Y V IP+L
Sbjct: 66 ---GNAADAYGVSSIPALFF 82
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 33.1 bits (76), Expect = 0.019
Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 33/99 (33%)
Query: 50 LYFSAHWCPPCKAF------TPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMP 103
+YF + CP C+ P + +F + VS D E
Sbjct: 24 VYFHSEHCPYCQQMNTFVLSDPGVSRLLEA------RFVVASVSVDTPE----------- 66
Query: 104 WPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDV 142
Q LA Y V G P+ + L +AG +V
Sbjct: 67 ----------GQELARRYRVPGTPTFVFLVPKAGAWEEV 95
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin,
redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Length = 81
Score = 32.3 bits (74), Expect = 0.019
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD 89
++ + C C A T R ++ G+ FE+I V
Sbjct: 6 YTRNDCVQCHA-------TKRAMENRGFDFEMINVDRV 36
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 32.7 bits (75), Expect = 0.020
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
FS C C+ TP L E L+ + Y+ F D E
Sbjct: 29 FSRKNCHVCQKVTPVLEE----LRLN-YEESFGFYYVDVEEE------------------ 65
Query: 112 ETRQSLASLYNVHGIPSLIL 131
++L +++ G+P ++
Sbjct: 66 ---KTLFQRFSLKGVPQILY 82
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 33.1 bits (76), Expect = 0.020
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PC+ +P L E R + +++ V+ D
Sbjct: 57 FFAPWCGPCRLVSPILEELARDHAG---RLKVVKVNVDEH-------------------- 93
Query: 112 ETRQSLASLYNVHGIPSLIL 131
LA+ Y V +P+L+L
Sbjct: 94 ---PGLAARYGVRSVPTLVL 110
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 32.7 bits (75), Expect = 0.021
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 33/84 (39%)
Query: 52 FSAHWCPPCKAFTP---QLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP 108
F+A WC PC+ P L + + +F+ D E
Sbjct: 41 FTASWCGPCRIMAPVFADLAKKFP---------NAVFLKVDVDEL--------------- 76
Query: 109 YASETRQSLASLYNVHGIPSLILL 132
+ +A ++V +P+ + +
Sbjct: 77 ------KPIAEQFSVEAMPTFLFM 94
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 33.0 bits (75), Expect = 0.023
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 24/86 (27%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPY 109
L F A+WC C+A L + FE++ +
Sbjct: 34 LVFGANWCTDCRALDKSL-RNQKNTALIAKHFEVVKIDVGN------------------- 73
Query: 110 ASETRQSLASLYNV---HGIPSLILL 132
+ L+ Y GIP+++++
Sbjct: 74 -FDRNLELSQAYGDPIQDGIPAVVVV 98
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein
transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Length = 148
Score = 32.9 bits (75), Expect = 0.026
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 16/74 (21%)
Query: 19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAF--TPQLIETYRKLKE 76
K Y A G V +V+ + S V F ++ + Y+ LK+
Sbjct: 88 KVLSPKYLGSWATGKVKGRVIEILFSWTV--------------WFPEDIKIRDAYQMLKK 133
Query: 77 DGYQFEIIFVSSDR 90
G + + D+
Sbjct: 134 QGIIKQDPKLPVDK 147
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 33.0 bits (75), Expect = 0.027
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 25/92 (27%)
Query: 48 IGLYFS-AHWCPPCKAF------TPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS 100
IGL+F+ + WC C + + + V D + ++Q
Sbjct: 50 IGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV--------HLHMVEVDFPQKNHQP--- 98
Query: 101 GMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
+ Q L + Y V G P L+ +
Sbjct: 99 -------EEQRQKNQELKAQYKVTGFPELVFI 123
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 31.5 bits (72), Expect = 0.032
Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F++ CP C A + E E E+ +++ +
Sbjct: 9 FTSPMCPHCPAAKRVVEEV---ANEMPDAVEVEYINVMEN-------------------- 45
Query: 112 ETRQSLASLYNVHGIPSLIL 131
A Y + +P++++
Sbjct: 46 ---PQKAMEYGIMAVPTIVI 62
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 32.4 bits (74), Expect = 0.032
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 26/90 (28%)
Query: 42 IESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSG 101
VI LYF A WC C + ++ + L++ Y I + D ++
Sbjct: 39 NMKNTVIVLYFFAKWCQACTMQSTEMDK----LQKY-YGKRIYLLKVDLDKN-------- 85
Query: 102 MPWPAIPYASETRQSLASLYNVHGIPSLIL 131
+SLA ++V +P++IL
Sbjct: 86 -------------ESLARKFSVKSLPTIIL 102
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 33.4 bits (75), Expect = 0.032
Identities = 10/84 (11%), Positives = 20/84 (23%), Gaps = 24/84 (28%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F C C+ + T+ K + A+
Sbjct: 49 FYNDGCGACRRYAS----TFSKFAGG-----------------LKVEHGKDALQIATAAA 87
Query: 112 ---ETRQSLASLYNVHGIPSLILL 132
+ L Y+++ +P L
Sbjct: 88 VNCASEVDLCRKYDINFVPRLFFF 111
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 32.0 bits (73), Expect = 0.041
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 26/81 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
WC PCKA P+ + + ++IF+ D +
Sbjct: 44 MFTQWCGPCKAMAPKYEKLAEEYL------DVIFLKLD--------------------CN 77
Query: 112 ETRQSLASLYNVHGIPSLILL 132
+ ++LA + +P+ +L
Sbjct: 78 QENKTLAKELGIRVVPTFKIL 98
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 31.9 bits (73), Expect = 0.043
Identities = 14/80 (17%), Positives = 22/80 (27%), Gaps = 25/80 (31%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PCK P + D ++ F D E
Sbjct: 40 FWATWCGPCKMIGPVFEKISDTPAGD----KVGFYKVDVDEQ------------------ 77
Query: 112 ETRQSLASLYNVHGIPSLIL 131
+A + +P+ +
Sbjct: 78 ---SQIAQEVGIRAMPTFVF 94
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 33.0 bits (74), Expect = 0.046
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 21/78 (26%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC AF P E +K+ + +
Sbjct: 37 FFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCA---------------------E 75
Query: 112 ETRQSLASLYNVHGIPSL 129
ET ++ +N+ G P++
Sbjct: 76 ETNSAVCREFNIAGFPTV 93
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 32.1 bits (73), Expect = 0.048
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PCK P L E L ++ Y +I + +
Sbjct: 58 FYADWCGPCKMVAPILEE----LSKE-YAGKIYIYKVNVDKE------------------ 94
Query: 112 ETRQSLASLYNVHGIPSLIL 131
LA + + IP++
Sbjct: 95 ---PELARDFGIQSIPTIWF 111
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 31.5 bits (72), Expect = 0.053
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 26/81 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
WC P KA P+ + + ++IF+ D +
Sbjct: 31 MFTQWCGPSKAMAPKYEKLAEEYL------DVIFLKLD--------------------CN 64
Query: 112 ETRQSLASLYNVHGIPSLILL 132
+ ++LA + +P+ +L
Sbjct: 65 QENKTLAKELGIRVVPTFKIL 85
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 31.6 bits (72), Expect = 0.058
Identities = 14/80 (17%), Positives = 21/80 (26%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PC+ F P+ R +K ++ D
Sbjct: 28 FYAPWCGPCQNFAPEFELLARMIKG-----KVRAGKVDCQAY------------------ 64
Query: 112 ETRQSLASLYNVHGIPSLIL 131
+ PS+ L
Sbjct: 65 ---PQTCQKAGIKAYPSVKL 81
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 31.6 bits (71), Expect = 0.063
Identities = 17/107 (15%), Positives = 29/107 (27%), Gaps = 32/107 (29%)
Query: 44 SCQVIGLYFSA-------HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQ 96
+ + I YF+ WCP C P + E + + E I+
Sbjct: 23 NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG---CVFIYCQVGEKP---- 75
Query: 97 SYLSGMPW--PAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLD 141
W P + V +P+L+ +L
Sbjct: 76 ------YWKDPNNDFRKN--------LKVTAVPTLLK--YGTPQKLV 106
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 31.1 bits (71), Expect = 0.063
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 33/83 (39%)
Query: 52 FSAHWCPPCKAFTP---QLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP 108
F A WC PC P +L E Y ++ ++SD +
Sbjct: 23 FWAEWCAPCLILAPIIEELAEDYPQVG-------FGKLNSDEN----------------- 58
Query: 109 YASETRQSLASLYNVHGIPSLIL 131
+A+ Y V +P++I
Sbjct: 59 ------PDIAARYGVMSLPTVIF 75
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 31.2 bits (71), Expect = 0.079
Identities = 15/80 (18%), Positives = 23/80 (28%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F + CP CKA P E ++ Y +F + + +
Sbjct: 31 FYSPACPYCKAMEPYFEE----YAKE-YGSSAVFGRINIATN------------------ 67
Query: 112 ETRQSLASLYNVHGIPSLIL 131
A Y V G P+
Sbjct: 68 ---PWTAEKYGVQGTPTFKF 84
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 31.2 bits (71), Expect = 0.081
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMP 103
F A WC CKA P+ E + ++ ++ D + + + G P
Sbjct: 32 FYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFP 83
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 31.3 bits (71), Expect = 0.086
Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PCK P L E L ++ Y +I+ D +
Sbjct: 45 FYADWCGPCKMVAPILDE----LAKE-YDGQIVIYKVDTEKE------------------ 81
Query: 112 ETRQSLASLYNVHGIPSLIL 131
Q LA + + IPS++
Sbjct: 82 ---QELAGAFGIRSIPSILF 98
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 31.3 bits (71), Expect = 0.15
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PCK P L E + ++ YQ ++ + ++
Sbjct: 37 FWAEWCGPCKMIAPILDE----IADE-YQGKLTVAKLNIDQN------------------ 73
Query: 112 ETRQSLASLYNVHGIPSLIL 131
A Y + GIP+L+L
Sbjct: 74 ---PGTAPKYGIRGIPTLLL 90
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae}
SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 31.4 bits (70), Expect = 0.15
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDG 78
F A WC CK P+ ++ L E
Sbjct: 38 FFAPWCGHCKNMAPEYVKAAETLVEKN 64
Score = 30.2 bits (67), Expect = 0.36
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKLKED 77
+ + A WC CK P E
Sbjct: 381 VLYYAPWCGHCKRLAPTYQELADTYANA 408
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 30.4 bits (69), Expect = 0.16
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC P K P L E + ++ YQ ++ + ++
Sbjct: 47 FWAEWCGPAKMIAPILDE----IADE-YQGKLTVAKLNIDQN------------------ 83
Query: 112 ETRQSLASLYNVHGIPSLIL 131
A Y + GIP+L+L
Sbjct: 84 ---PGTAPKYGIRGIPTLLL 100
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 31.2 bits (70), Expect = 0.17
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKLKED 77
+ F A WC CK P + K+
Sbjct: 272 VEFYAPWCGHCKQLAPIWDKLGETYKDH 299
Score = 28.5 bits (63), Expect = 1.4
Identities = 8/51 (15%), Positives = 12/51 (23%), Gaps = 5/51 (9%)
Query: 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS 100
L F K +I+F+ D + Q L
Sbjct: 140 LLFLPKSVSDYDGKLSNFKTAAESFKG-----KILFIFIDSDHTDNQRILE 185
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 30.0 bits (68), Expect = 0.17
Identities = 19/80 (23%), Positives = 24/80 (30%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PCK P L E E + + D +
Sbjct: 37 FWATWCGPCKMVAPVLEEIA---TERATDLTVAKLDVDTN-------------------- 73
Query: 112 ETRQSLASLYNVHGIPSLIL 131
A + V IP+LIL
Sbjct: 74 ---PETARNFQVVSIPTLIL 90
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 30.1 bits (68), Expect = 0.17
Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 6/53 (11%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPW 104
P C L RK E FV + + + + +P
Sbjct: 30 LYRSSIPMCLLVNQHLSLLARKFP------ETKFVKAIVNSCIQHYHDNCLPT 76
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 30.0 bits (68), Expect = 0.18
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A C PCK P L E L D Y+ + + D E+
Sbjct: 26 FWATACGPCKMIAPVLEE----LAAD-YEGKADILKLDVDEN------------------ 62
Query: 112 ETRQSLASLYNVHGIPSLIL 131
S A+ Y V IP+LI+
Sbjct: 63 ---PSTAAKYEVMSIPTLIV 79
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 31.1 bits (70), Expect = 0.18
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 22/93 (23%)
Query: 40 SYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGY-QFEIIFVSSDRSESSYQSY 98
+ + V + F A WC + P E +KE+ + +++F D
Sbjct: 17 EILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVD--------- 67
Query: 99 LSGMPWPAIPYASETRQSLASLYNVHGIPSLIL 131
+ +A Y + P+L L
Sbjct: 68 ------------CDQHSDIAQRYRISKYPTLKL 88
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 30.0 bits (68), Expect = 0.19
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PCK P+L + + +++ D +
Sbjct: 38 FHAQWCGPCKILGPRLEK----MVAK-QHGKVVMAKVDIDDH------------------ 74
Query: 112 ETRQSLASLYNVHGIPSLIL 131
LA Y V +P+++
Sbjct: 75 ---TDLAIEYEVSAVPTVLA 91
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 29.9 bits (68), Expect = 0.20
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PCK P L E + ++ YQ ++ + ++
Sbjct: 27 FWAEWCGPCKMIAPILDE----IADE-YQGKLTVAKLNIDQN------------------ 63
Query: 112 ETRQSLASLYNVHGIPSLIL 131
A Y + GIP+L+L
Sbjct: 64 ---PGTAPKYGIRGIPTLLL 80
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 29.6 bits (67), Expect = 0.22
Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PC+ P L + + Y +I V + E+
Sbjct: 30 FWAAWCGPCRQIAPSLEA----IAAE-YGDKIEIVKLNIDEN------------------ 66
Query: 112 ETRQSLASLYNVHGIPSLIL 131
A+ Y V IP+L +
Sbjct: 67 ---PGTAAKYGVMSIPTLNV 83
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 29.6 bits (67), Expect = 0.25
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC P K P L E L ++ ++ V D E+
Sbjct: 24 FWAPWCGPSKMIAPVLEE----LDQE-MGDKLKIVKIDVDEN------------------ 60
Query: 112 ETRQSLASLYNVHGIPSLIL 131
Q A Y V IP+L++
Sbjct: 61 ---QETAGKYGVMSIPTLLV 77
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 29.6 bits (67), Expect = 0.26
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PC+ +P + Y + V + +
Sbjct: 32 FWASWCGPCQLMSPLINL----AANT-YSDRLKVVKLEIDPN------------------ 68
Query: 112 ETRQSLASLYNVHGIPSLIL 131
+ Y V G+P+L L
Sbjct: 69 ---PTTVKKYKVEGVPALRL 85
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 29.2 bits (66), Expect = 0.28
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PC+ P + E L ++ Y+ ++ V + E+
Sbjct: 26 FWAPWCGPCRMIAPIIEE----LAKE-YEGKVKVVKVNVDEN------------------ 62
Query: 112 ETRQSLASLYNVHGIPSLIL 131
+ A+ Y + IP+L+L
Sbjct: 63 ---PNTAAQYGIRSIPTLLL 79
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 29.9 bits (67), Expect = 0.29
Identities = 16/140 (11%), Positives = 28/140 (20%), Gaps = 44/140 (31%)
Query: 50 LYFSAHWCPPCKAF------TPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMP 103
+ C+ + R+ F V D E
Sbjct: 47 INIQNVQDFACQCLNRDVWSNEAVKNIIRE------HFIFWQVYHDSEEG---------- 90
Query: 104 WPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWP 163
Q Y + P + + LD T + E + F
Sbjct: 91 -----------QRYIQFYKLGDFPYVSI--------LDPRTGQKLVEWHQLDVSSFL--- 128
Query: 164 PKLVNVLSPRHCPKLYDSPA 183
++ L S +
Sbjct: 129 DQVTGFLGEHGQLDGLSSSS 148
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 29.2 bits (66), Expect = 0.30
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
A WC PC + P + + E Y+ + +F + E+
Sbjct: 28 CWAEWCAPCHLYEPIYKK----VAEK-YKGKAVFGRLNVDEN------------------ 64
Query: 112 ETRQSLASLYNVHGIPSLIL 131
Q +A Y+V IP+ ++
Sbjct: 65 ---QKIADKYSVLNIPTTLI 81
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 29.2 bits (66), Expect = 0.32
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PCK P L E + ++ + ++ + ++
Sbjct: 27 FWAEWCGPCKMIGPALGE----IGKE-FAGKVTVAKVNIDDN------------------ 63
Query: 112 ETRQSLASLYNVHGIPSLIL 131
+ Y V IP+L+L
Sbjct: 64 ---PETPNAYQVRSIPTLML 80
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 28.8 bits (65), Expect = 0.37
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PC+ P L E E + ++ + E+
Sbjct: 24 FWAAWCGPCRMMAPVLEE----FAEA-HADKVTVAKLNVDEN------------------ 60
Query: 112 ETRQSLASLYNVHGIPSLIL 131
S + + IP+LIL
Sbjct: 61 ---PETTSQFGIMSIPTLIL 77
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 29.0 bits (65), Expect = 0.43
Identities = 3/18 (16%), Positives = 3/18 (16%)
Query: 52 FSAHWCPPCKAFTPQLIE 69
P C L
Sbjct: 37 LYRSSVPMCLVVNQHLSV 54
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 29.6 bits (66), Expect = 0.45
Identities = 22/135 (16%), Positives = 39/135 (28%), Gaps = 7/135 (5%)
Query: 47 VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGY--QFEIIFVSSDRSESSYQSY-LSGMP 103
I L+ A C C+ L ET + E + ++ S + + Y + +P
Sbjct: 24 SIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVP 83
Query: 104 WPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWP 163
I + L +LI R ++ + L P
Sbjct: 84 TIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHVSQRKPQLSEKTLELLQVVDI----PIE 139
Query: 164 PKLVNVLSPRHCPKL 178
+ S +CP
Sbjct: 140 IWVFVTTSCGYCPSA 154
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein,
structural genomics, PSI- protein structure initiative;
HET: STE; 1.90A {Eubacterium ventriosum}
Length = 297
Score = 29.9 bits (68), Expect = 0.46
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 66 QLIETYRKLKEDGYQFEIIFVSSDRSESSYQS 97
+ +R E G+ +++ S SY S
Sbjct: 72 SYADVFRSFVEQGFPVVCFTITTLFS-GSYNS 102
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding
protein, lipid binding protein; HET: PLM; 2.04A
{Streptococcus mutans}
Length = 320
Score = 29.9 bits (68), Expect = 0.47
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 66 QLIETYRKLKEDGYQFEIIFVSSDRSESSYQS 97
Q +R+ E+G + I SS S +YQS
Sbjct: 103 QFESYFRQSAENGQEVLYIAFSSVLS-GTYQS 133
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 28.9 bits (65), Expect = 0.49
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 22/80 (27%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC CK P+ ++KE + ++ + D +
Sbjct: 32 FYAPWCGHCKNLEPEWAAAASEVKEQT-KGKVKLAAVD---------------------A 69
Query: 112 ETRQSLASLYNVHGIPSLIL 131
Q LAS Y + G P++ +
Sbjct: 70 TVNQVLASRYGIRGFPTIKI 89
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 28.4 bits (64), Expect = 0.52
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PC+ P L E + ++ Y+ +++ D E+
Sbjct: 25 FWAEWCAPCRMIAPILEE----IAKE-YEGKLLVAKLDVDEN------------------ 61
Query: 112 ETRQSLASLYNVHGIPSLIL 131
A Y V IP++IL
Sbjct: 62 ---PKTAMRYRVMSIPTVIL 78
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein,
periplasm, redox-active center, oxidoreductase; HET:
PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Length = 195
Score = 29.5 bits (65), Expect = 0.56
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 51 YFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVS 87
FS CP C + + + +D F +
Sbjct: 24 VFSY-ACPFCYKYDKAVTGPVSEKVKDIVAFTPFHLE 59
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 29.3 bits (65), Expect = 0.59
Identities = 11/81 (13%), Positives = 21/81 (25%), Gaps = 22/81 (27%)
Query: 51 YFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYA 110
F CP C + + + +I+ + E
Sbjct: 140 VFVTPTCPYCPLAVRMAHK-FAIENTKAGKGKILGDMVEAIEY----------------- 181
Query: 111 SETRQSLASLYNVHGIPSLIL 131
A YNV +P +++
Sbjct: 182 ----PEWADQYNVMAVPKIVI 198
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains
containing mixed alpha/beta structures, PSI; HET: PLM;
2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Length = 289
Score = 29.5 bits (67), Expect = 0.66
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 66 QLIETYRKLKEDGYQFEIIFVSSDRSESSYQS 97
+ E + ++ I SS S +YQ+
Sbjct: 69 AMKELFLPYAKENRPCLYIAFSSKLS-GTYQT 99
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP:
c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 28.4 bits (64), Expect = 0.67
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PCK P + E L ++ Y +I + E+
Sbjct: 25 FWAPWCGPCKLIAPVIDE----LAKE-YSGKIAVYKLNTDEA------------------ 61
Query: 112 ETRQSLASLYNVHGIPSLIL 131
+A+ YN+ IP+++
Sbjct: 62 ---PGIATQYNIRSIPTVLF 78
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 28.5 bits (64), Expect = 0.71
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKED 77
F A WC CK P +K K
Sbjct: 32 FYAPWCGHCKQLEPIYTSLGKKYKGQ 57
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 28.4 bits (64), Expect = 0.72
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 25/80 (31%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WCP C+ P + E G E+ D +E
Sbjct: 29 FYAPWCPACQNLQP----EWESFAEWGEDLEVNIAKVDVTEQ------------------ 66
Query: 112 ETRQSLASLYNVHGIPSLIL 131
L+ + ++ +P++
Sbjct: 67 ---PGLSGRFIINALPTIYH 83
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 28.0 bits (63), Expect = 0.78
Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 23/80 (28%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC CK P E +K +I V
Sbjct: 28 FYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE-------------------- 67
Query: 112 ETRQSLASLYNVHGIPSLIL 131
+++ S Y+V G P+L+L
Sbjct: 68 ---RNICSKYSVRGYPTLLL 84
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 28.0 bits (63), Expect = 0.81
Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 23/80 (28%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC CKA P+ + KLK +G + + V +
Sbjct: 31 FYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE-------------------- 70
Query: 112 ETRQSLASLYNVHGIPSLIL 131
LA Y V G P++
Sbjct: 71 ---SDLAQQYGVRGYPTIKF 87
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 28.0 bits (63), Expect = 0.88
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 26/80 (32%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC PC+ P + E + + Y+ ++ V + ES
Sbjct: 26 FWAPWCGPCRIIAPVVDE----IAGE-YKDKLKCVKLNTDES------------------ 62
Query: 112 ETRQSLASLYNVHGIPSLIL 131
++AS Y + IP++++
Sbjct: 63 ---PNVASEYGIRSIPTIMV 79
>2dt8_A DEGV family protein; fatty acid binding, structural genomics,
NPPSFA, natio project on protein structural and
functional analyses; HET: PLM; 1.48A {Thermus
thermophilus}
Length = 280
Score = 28.7 bits (65), Expect = 0.95
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 66 QLIETYRKLKEDGYQFEIIFVSSDRSESSYQS 97
YR+ E+ + +S S + QS
Sbjct: 68 DFARVYREALEEADHVLSLHISGKLS-GTVQS 98
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 28.9 bits (64), Expect = 0.98
Identities = 13/84 (15%), Positives = 18/84 (21%), Gaps = 24/84 (28%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFE---IIFVSSDRSESSYQSYLSGMPWPAIP 108
+ K Q L+ E I FV D
Sbjct: 34 YYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVD------------------- 74
Query: 109 YASETRQSLASLYNVHGIPSLILL 132
++ LA SL +L
Sbjct: 75 --AKKEAKLAKKLGFDEEGSLYVL 96
>2g7z_A Conserved hypothetical protein SPY1493; long-fatty acid binding
protein, lipid binding protein, PSI, structural
genomics; HET: MSE HXA; 2.05A {Streptococcus pyogenes}
Length = 282
Score = 28.7 bits (65), Expect = 1.1
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 66 QLIETYRKLKEDGYQFEI--IFVSSDRSESSYQS 97
ETY L + G +I I +S S + ++
Sbjct: 72 LFAETYENLVKKGVT-DIVAIHLSPALS-GTIEA 103
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 28.1 bits (63), Expect = 1.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDG 78
F A WC CK F P+ + LK++
Sbjct: 41 FYAPWCGHCKQFAPEYEKIASTLKDND 67
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 28.6 bits (63), Expect = 1.2
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 24/80 (30%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC CK + + ++L ++ V+ D
Sbjct: 42 FYAPWCGHCKKLSSTFRKAAKRLDGVV---QVAAVNCD---------------------L 77
Query: 112 ETRQSLASLYNVHGIPSLIL 131
++L + Y+V+G P+L++
Sbjct: 78 NKNKALCAKYDVNGFPTLMV 97
>2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure
initiative; 1.60A {Desulfotalea psychrophila LSV54}
Length = 377
Score = 28.5 bits (64), Expect = 1.4
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 13 LKP---GGSKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIE 69
LKP GG A + + G + + S +ES +GL A W + PQ +
Sbjct: 290 LKPSLLGGFHYAGQWIELARERG-IGFWITSALES--NLGLAAIAQWTALYQPTMPQGLG 346
Query: 70 TYRKLKED 77
T + +
Sbjct: 347 TGQLYTNN 354
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid
binding, protei structure initiative; HET: ELA; 2.65A
{Streptococcus agalactiae}
Length = 285
Score = 28.3 bits (64), Expect = 1.5
Identities = 7/34 (20%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 66 QLIETYRKLKEDGYQFEI--IFVSSDRSESSYQS 97
+L + +L+++GY + +F+++ S +Q+
Sbjct: 71 ELDDLLCQLEKEGYT-HVLGLFIAAGIS-GFWQN 102
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 27.3 bits (61), Expect = 1.5
Identities = 7/80 (8%), Positives = 14/80 (17%), Gaps = 21/80 (26%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
+ W A + + + D
Sbjct: 40 YYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARID---------------------G 78
Query: 112 ETRQSLASLYNVHGIPSLIL 131
E + V G P++
Sbjct: 79 EKYPDVIERMRVSGFPTMRY 98
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 27.4 bits (61), Expect = 1.6
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKED 77
F A WC C+ TP+ + LK+
Sbjct: 42 FYAPWCGHCQRLTPEWKKAATALKDV 67
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding
protein; HET: PLM; 2.50A {Bacillus subtilis}
Length = 315
Score = 28.0 bits (63), Expect = 1.7
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 66 QLIETYRKLKEDGYQFEIIFVSSDRSESSYQS 97
+L+ Y +L + I +SS S ++ S
Sbjct: 102 ELVALYEELGKSYDAVISIHLSSGIS-GTFSS 132
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 27.7 bits (61), Expect = 1.7
Identities = 9/90 (10%), Positives = 26/90 (28%), Gaps = 7/90 (7%)
Query: 48 IGLYFSAHWCPPCKA-----FTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGM 102
+ L F+ + C C+ +T + + + D + + + +G
Sbjct: 50 VMLDFTGYGCVNCRKMELAVWTDPKVSSI--INNDYVLITLYVDNKTPLTEPVKIMENGT 107
Query: 103 PWPAIPYASETRQSLASLYNVHGIPSLILL 132
+ + + P +L+
Sbjct: 108 ERTLRTVGDKWSYLQRVKFGANAQPFYVLI 137
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 28.0 bits (62), Expect = 1.7
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 21/78 (26%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
F A WC C AF P T+ L ED +++ + A+ A
Sbjct: 37 FFASWCGHCIAFAP----TWXALAED-----------------VKAWRPALYLAALDCAE 75
Query: 112 ETRQSLASLYNVHGIPSL 129
ET ++ +N+ G P++
Sbjct: 76 ETNSAVCRDFNIPGFPTV 93
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide
compelx, VHS domain, DXXLL sorting signal, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB:
1jpl_A 1lf8_A*
Length = 171
Score = 27.6 bits (61), Expect = 1.8
Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 16/75 (21%)
Query: 19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAF--TPQLIETYRKLKE 76
K Y V TKV+ + S W A ++ + Y LK
Sbjct: 100 KVVSPKYLGDRVSEKVKTKVIELLYS-----------WT---MALPEEAKIKDAYHMLKR 145
Query: 77 DGYQFEIIFVSSDRS 91
G + DR+
Sbjct: 146 QGIVQSDPPIPVDRT 160
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 27.4 bits (61), Expect = 2.0
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 93 SSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGR-LDV 142
++++ P + YA R A+ +++G LI G + LD
Sbjct: 3 TTWKELTDNNPAHSENYAQRWRNLAAAGNDIYGEARLIDAMAPRGAKILDA 53
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics,
northeast structural genomics consortiu PSI-biology,
calponin-homology domain; NMR {Homo sapiens}
Length = 126
Score = 27.3 bits (60), Expect = 2.1
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 141 DVITTEARHELSEDPDGEFFPWPP------KLVNVLSPRHCPKLYDSP 182
+ E+ + DP+G +L+ L P K+Y P
Sbjct: 23 TLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEP 70
>1mgp_A Hypothetical protein TM841; two domain structure with mixed
alpha/beta structures in BOTH domains, structural
genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP:
c.119.1.1 PDB: 1vpv_A*
Length = 313
Score = 27.6 bits (62), Expect = 2.1
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 66 QLIETYRKLKEDGYQFEI-IFVSSDRSESSYQS 97
+ Y K KE+ Y + + +SS S +Y S
Sbjct: 95 DFKKRYLKYKEEDYDVVLVLTLSSKLS-GTYNS 126
>1vq8_3 50S ribosomal protein L44E; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: g.41.8.3 PDB:
1jj2_2 1k73_4* 1k8a_4* 1k9m_4* 1kc8_4* 1kd1_4* 1kqs_2*
1m1k_4* 1m90_4* 1n8r_4* 1nji_4* 1q7y_4* 1q81_4* 1q82_4*
1q86_4* 1qvf_2 1qvg_2 1s72_3* 1vq4_3* 1vq5_3* ...
Length = 92
Score = 26.7 bits (59), Expect = 2.2
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 57 CPPCKAFTPQLIETYRKLKEDGY 79
CP C +E R ++ G
Sbjct: 11 CPHCNEHQEHEVEKVRSGRQTGM 33
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA,
thioredoxin fold, redox- active center; 1.90A {Xylella
fastidiosa}
Length = 193
Score = 27.4 bits (60), Expect = 2.2
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL 99
+ CP C F +L + +D + V + ++YL
Sbjct: 32 IFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAVFGGVWDPFARAYL 79
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics,
rossmann fold; 1.10A {Methanosarcina mazei}
Length = 103
Score = 26.6 bits (59), Expect = 2.7
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 7/41 (17%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSE 92
+ C CK T + L + G F+ ++V +
Sbjct: 27 YGLSTCVWCKK-------TKKLLTDLGVDFDYVYVDRLEGK 60
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like,
thiol-disulfide exchange, cell inner membrane, CYT
C-type biogenesis, disulfide bond; 1.75A {Pseudomonas
aeruginosa} PDB: 3kh9_A
Length = 176
Score = 27.3 bits (61), Expect = 2.8
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 54 AHWCPPCKAFTPQLIETYRKLKEDGYQF 81
WCP C+ P+L L E G
Sbjct: 67 GTWCPSCRVEHPELTR----LAEQGVVI 90
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal
thioredoxin-like domain, N-terminal beta-sheet,
fingerprint rigion, oxidoreductase; 1.90A {Escherichia
coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Length = 168
Score = 26.9 bits (60), Expect = 3.6
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 4/25 (16%)
Query: 54 AHWCPPCKAFTPQLIETYRKLKEDG 78
A WCP C+A L + L G
Sbjct: 60 ATWCPTCRAEHQYLNQ----LSAQG 80
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding,
cytoplasm, UBL conjugation, endosome, membrane, protein
transport, SH3 domain; 2.60A {Homo sapiens}
Length = 140
Score = 26.4 bits (58), Expect = 4.0
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 65 PQLIETYRKLKEDGYQF 81
+ + LKE G F
Sbjct: 123 SLISAMIKNLKEQGVTF 139
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis
complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Length = 157
Score = 26.5 bits (58), Expect = 4.5
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 65 PQLIETYRKLKEDGYQF 81
++ Y L+ G +F
Sbjct: 139 TGVVTIYEDLRRKGLEF 155
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin
binding, STAM2, structural genomics, NPPSFA; NMR {Homo
sapiens} PDB: 2l0t_B
Length = 163
Score = 26.4 bits (58), Expect = 5.1
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 65 PQLIETYRKLKEDGYQF 81
+ T + +KE+G F
Sbjct: 134 SLISATIKSMKEEGITF 150
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 5.6
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 16/39 (41%)
Query: 114 RQSL----ASL--YNVHGIPSLILLAVEAGGRLDVITTE 146
+Q+L ASL Y P+ LA++A T E
Sbjct: 19 KQALKKLQASLKLYADDSAPA---LAIKA-------TME 47
>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural
genomics, unknown function; 2.20A {Thermus thermophilus}
Length = 286
Score = 26.6 bits (59), Expect = 5.7
Identities = 5/36 (13%), Positives = 9/36 (25%), Gaps = 5/36 (13%)
Query: 124 HGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEF 159
P +L G D + E++
Sbjct: 217 ERRPLYVL-----VGERDGTSYPYAEEVASRLRAPI 247
>4a18_C 60S ribosomal protein L36A; ribosome, eukaryotic initiation
factor 6, EIF6, transla large ribosomal subunit, rRNA;
3.52A {Tetrahymena thermophila} PDB: 4a19_C 4a1b_C
4a1d_C
Length = 109
Score = 25.7 bits (56), Expect = 6.3
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 57 CPPCKAFTPQLIETYRKLKEDGY 79
C C + T + Y+K KE +
Sbjct: 12 CKKCNSHTNHKVSQYKKSKESTH 34
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold,
deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N;
2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Length = 341
Score = 26.2 bits (58), Expect = 6.9
Identities = 10/53 (18%), Positives = 14/53 (26%), Gaps = 11/53 (20%)
Query: 16 GGSKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLI 68
G GA T N + GT + + AF + I
Sbjct: 236 GKGAGAGTTANYPMGRGTPYSVWGEALT-----------DSLKRIAAFGAEAI 277
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural
genomics, structural genomics consortium, SGC, RNA
binding protein; HET: SAH; 1.60A {Homo sapiens}
Length = 184
Score = 26.0 bits (58), Expect = 7.2
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 53 SAHWCPPCKAFTPQLIETYRKLKEDGYQ 80
+ W P + PQLI+ ++ K +GY
Sbjct: 75 AEQWLPLVEVKPPQLIDYLQQKKTEGYT 102
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold,
cytochrome C maturation, atomic resolution
oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP:
c.47.1.10
Length = 156
Score = 25.7 bits (57), Expect = 7.4
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 54 AHWCPPCKAFTPQLIE 69
A WC PC P L E
Sbjct: 51 ASWCVPCHDEAPLLTE 66
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.35A {Bordetella parapertussis}
Length = 195
Score = 25.7 bits (56), Expect = 7.6
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFE 82
F A+ CP C A P ++E + K +
Sbjct: 32 FFAYTCPHCAAIEP-MVEDWAKTAPQDVVLK 61
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha,
NPPSFA, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Length = 121
Score = 25.3 bits (55), Expect = 8.4
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 6/48 (12%)
Query: 141 DVITTEARHELSEDPDGEFFPW------PPKLVNVLSPRHCPKLYDSP 182
+ E+ + DP+ KL+N L P K P
Sbjct: 17 SLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLDP 64
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural
genomics, PSI, protein structure initiative; NMR
{Xanthomonas campestris PV}
Length = 132
Score = 25.1 bits (55), Expect = 9.0
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 155 PDGEFFPWPPKLVNVLSPRHCPKLYDSPALILFI 188
PD WP + L P H + ++ +
Sbjct: 37 PDELVEHWPVPSLGQLQPAHMDAVLALNPAVILL 70
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural
genomics, center for structural genomics of infectious
diseases; 1.90A {Francisella tularensis}
Length = 232
Score = 25.9 bits (57), Expect = 9.1
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 33/98 (33%)
Query: 66 QLIETY-RKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV- 123
L + Y + + + +++I+F G + IP + LA YN+
Sbjct: 66 TLADYYAQLIIKSDVKYDILF---------------GPAYKGIPLVAAISTVLALKYNID 110
Query: 124 ------------HGIPSLILLAVEAGGRL----DVITT 145
HG + + A ++ DV+T
Sbjct: 111 MPYAFDRKEAKDHGEGGVFVGADMTNKKVLLIDDVMTA 148
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.417
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,888,863
Number of extensions: 163024
Number of successful extensions: 777
Number of sequences better than 10.0: 1
Number of HSP's gapped: 710
Number of HSP's successfully gapped: 186
Length of query: 190
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 102
Effective length of database: 4,244,745
Effective search space: 432963990
Effective search space used: 432963990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.7 bits)