BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy873
(141 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XGL4|RL31_CYAPA 60S ribosomal protein L31 OS=Cyanophora paradoxa GN=RPL31 PE=3 SV=1
Length = 119
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 70/125 (56%), Gaps = 10/125 (8%)
Query: 17 LPSVKDKSKPSA---ATSYTIGGVKVEFPVKAYPSQISMMTKESSKYISSMHLSVLCTVD 73
+P ++K +A YTI K V + + KE K+ S + + VD
Sbjct: 1 MPKAENKKSRAAEIVTREYTINLHKRLHGV-GFKKRAPRAVKEIKKFASKIMGTTDVRVD 59
Query: 74 LSCPIWFWWGTSLINMDIRSVPFRIRVRLSRRRNDDEDSPHKLYTLVTWVPVPTFKELQT 133
+ W N IRSVP+R+RVRL+R+RNDDED+ KLYTLVT+VPV +FK LQT
Sbjct: 60 PRLNKFVW------NQGIRSVPYRVRVRLARKRNDDEDAKEKLYTLVTYVPVTSFKGLQT 113
Query: 134 ENVDA 138
+NVDA
Sbjct: 114 QNVDA 118
>sp|Q5RBR9|RL31_PONAB 60S ribosomal protein L31 OS=Pongo abelii GN=RPL31 PE=2 SV=1
Length = 125
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 45/49 (91%)
Query: 91 IRSVPFRIRVRLSRRRNDDEDSPHKLYTLVTWVPVPTFKELQTENVDAS 139
IR+VP+RIRVRLSR+RN+DEDSP+KLYTLVT+VPV TFK LQT NVD +
Sbjct: 77 IRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDGN 125
>sp|P62902|RL31_RAT 60S ribosomal protein L31 OS=Rattus norvegicus GN=Rpl31 PE=2 SV=1
Length = 125
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 45/49 (91%)
Query: 91 IRSVPFRIRVRLSRRRNDDEDSPHKLYTLVTWVPVPTFKELQTENVDAS 139
IR+VP+RIRVRLSR+RN+DEDSP+KLYTLVT+VPV TFK LQT NVD +
Sbjct: 77 IRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>sp|P62901|RL31_PIG 60S ribosomal protein L31 OS=Sus scrofa GN=RPL31 PE=2 SV=1
Length = 125
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 45/49 (91%)
Query: 91 IRSVPFRIRVRLSRRRNDDEDSPHKLYTLVTWVPVPTFKELQTENVDAS 139
IR+VP+RIRVRLSR+RN+DEDSP+KLYTLVT+VPV TFK LQT NVD +
Sbjct: 77 IRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>sp|P62900|RL31_MOUSE 60S ribosomal protein L31 OS=Mus musculus GN=Rpl31 PE=2 SV=1
Length = 125
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 45/49 (91%)
Query: 91 IRSVPFRIRVRLSRRRNDDEDSPHKLYTLVTWVPVPTFKELQTENVDAS 139
IR+VP+RIRVRLSR+RN+DEDSP+KLYTLVT+VPV TFK LQT NVD +
Sbjct: 77 IRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>sp|Q1KSC7|RL31_MARMO 60S ribosomal protein L31 OS=Marmota monax GN=RPL31 PE=2 SV=1
Length = 125
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 45/49 (91%)
Query: 91 IRSVPFRIRVRLSRRRNDDEDSPHKLYTLVTWVPVPTFKELQTENVDAS 139
IR+VP+RIRVRLSR+RN+DEDSP+KLYTLVT+VPV TFK LQT NVD +
Sbjct: 77 IRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>sp|P62899|RL31_HUMAN 60S ribosomal protein L31 OS=Homo sapiens GN=RPL31 PE=1 SV=1
Length = 125
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 45/49 (91%)
Query: 91 IRSVPFRIRVRLSRRRNDDEDSPHKLYTLVTWVPVPTFKELQTENVDAS 139
IR+VP+RIRVRLSR+RN+DEDSP+KLYTLVT+VPV TFK LQT NVD +
Sbjct: 77 IRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>sp|Q56JX3|RL31_BOVIN 60S ribosomal protein L31 OS=Bos taurus GN=RPL31 PE=2 SV=1
Length = 125
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 45/49 (91%)
Query: 91 IRSVPFRIRVRLSRRRNDDEDSPHKLYTLVTWVPVPTFKELQTENVDAS 139
IR+VP+RIRVRLSR+RN+DEDSP+KLYTLVT+VPV TFK LQT NVD +
Sbjct: 77 IRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>sp|Q6NUH0|RL31_XENLA 60S ribosomal protein L31 OS=Xenopus laevis GN=rpl31 PE=2 SV=1
Length = 125
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 44/49 (89%)
Query: 91 IRSVPFRIRVRLSRRRNDDEDSPHKLYTLVTWVPVPTFKELQTENVDAS 139
IR+VP+RIRVRLSR+RN+DEDSP+KLYTLVT+VPV +K LQT NVD +
Sbjct: 77 IRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTNYKGLQTVNVDEN 125
>sp|Q90YT7|RL31_ICTPU 60S ribosomal protein L31 OS=Ictalurus punctatus GN=rpl31 PE=2 SV=1
Length = 125
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 45/49 (91%)
Query: 91 IRSVPFRIRVRLSRRRNDDEDSPHKLYTLVTWVPVPTFKELQTENVDAS 139
+R+VP+R+RVRLSR+RN+DEDSP+KLYTLVT+VPV T+K LQT NVD +
Sbjct: 77 VRNVPYRMRVRLSRKRNEDEDSPNKLYTLVTYVPVTTYKGLQTVNVDEN 125
>sp|Q9IA76|RL31_PAROL 60S ribosomal protein L31 OS=Paralichthys olivaceus GN=rpl31 PE=2
SV=1
Length = 124
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 44/49 (89%)
Query: 91 IRSVPFRIRVRLSRRRNDDEDSPHKLYTLVTWVPVPTFKELQTENVDAS 139
+R+VP+RIRVRLSR+RN+DEDSP+KLYTLVT+VPV T K LQT NVD +
Sbjct: 76 VRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTCKGLQTVNVDEN 124
>sp|O18602|RL31_DROVI 60S ribosomal protein L31 OS=Drosophila virilis GN=RpL31 PE=3 SV=1
Length = 128
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 55/68 (80%), Gaps = 4/68 (5%)
Query: 74 LSCPIWFWWGTSLINMDIRSVPFRIRVRLSRRRNDDEDSPHKLYTLVTWVPVPTFKELQT 133
L+ IW + I++ RS PFR+RVRL+RRRNDDEDSP+KLYTLVT+VPVPTFK LQT
Sbjct: 65 LNKHIW----SKGISLRYRSTPFRVRVRLARRRNDDEDSPNKLYTLVTYVPVPTFKNLQT 120
Query: 134 ENVDASAD 141
ENV++S D
Sbjct: 121 ENVESSDD 128
>sp|Q9GN74|RL31_AEDAE 60S ribosomal protein L31 OS=Aedes aegypti GN=RpL31 PE=2 SV=1
Length = 124
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/51 (82%), Positives = 48/51 (94%)
Query: 91 IRSVPFRIRVRLSRRRNDDEDSPHKLYTLVTWVPVPTFKELQTENVDASAD 141
IR+ PFRIRVRLSRRRNDDEDSP+KLYTLVT+VPV TFKELQTENV+++ D
Sbjct: 74 IRNPPFRIRVRLSRRRNDDEDSPNKLYTLVTYVPVSTFKELQTENVESTED 124
>sp|Q9V597|RL31_DROME 60S ribosomal protein L31 OS=Drosophila melanogaster GN=RpL31 PE=1
SV=1
Length = 124
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/51 (80%), Positives = 46/51 (90%)
Query: 91 IRSVPFRIRVRLSRRRNDDEDSPHKLYTLVTWVPVPTFKELQTENVDASAD 141
IRS PFRIRVRL+RRRNDDEDSP+KLYT VT+VPV TFK LQTENV++S D
Sbjct: 74 IRSTPFRIRVRLARRRNDDEDSPNKLYTYVTYVPVSTFKNLQTENVESSDD 124
>sp|Q7KF90|RL31_SPOFR 60S ribosomal protein L31 OS=Spodoptera frugiperda GN=RpL31 PE=2
SV=1
Length = 124
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 58/97 (59%), Gaps = 6/97 (6%)
Query: 45 AYPSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMDIRSVPFRIRVRLSR 104
+ + KE K+ + VD + W + +R+VPFR+RVRLSR
Sbjct: 34 GFKKRAPRAIKEIRKFAEKQMGTPDVRVDTRLNKFLW------SKGVRNVPFRVRVRLSR 87
Query: 105 RRNDDEDSPHKLYTLVTWVPVPTFKELQTENVDASAD 141
RRNDDEDS HKL+TLVT+VPV + K LQTENVDAS +
Sbjct: 88 RRNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQE 124
>sp|Q9GP16|RL31_HELVI 60S ribosomal protein L31 OS=Heliothis virescens GN=RpL31 PE=2 SV=1
Length = 124
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 58/97 (59%), Gaps = 6/97 (6%)
Query: 45 AYPSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMDIRSVPFRIRVRLSR 104
+ + KE K+ + VD + W + +R+VPFR+RVRLSR
Sbjct: 34 GFKKRAPRAIKEIRKFAEKQMGTPDVRVDTRLNKFLW------SKGVRNVPFRVRVRLSR 87
Query: 105 RRNDDEDSPHKLYTLVTWVPVPTFKELQTENVDASAD 141
RRNDDEDS HKL+TLVT+VPV + K LQTENVDAS +
Sbjct: 88 RRNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQE 124
>sp|Q9M573|RL31_PERFR 60S ribosomal protein L31 OS=Perilla frutescens GN=RPL31 PE=2 SV=1
Length = 121
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 12/96 (12%)
Query: 44 KAYPSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMDIRSVPFRIRVRLS 103
K P I + K + K + + + V V L+ IW + IRSVP RIRVR++
Sbjct: 33 KKAPKAIKEIRKFAQKAMGTTDVRV--DVKLNKHIW--------SRGIRSVPRRIRVRIA 82
Query: 104 RRRNDDEDSPHKLYTLVTWVPVP--TFKELQTENVD 137
R+RNDDED+ +LY+LVT +P K L T+ +D
Sbjct: 83 RKRNDDEDAKEELYSLVTVAEIPEGGLKGLGTQVID 118
>sp|Q54XB5|RL31_DICDI 60S ribosomal protein L31 OS=Dictyostelium discoideum GN=rpl31 PE=3
SV=1
Length = 111
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 5/57 (8%)
Query: 80 FWWGTSLINMDIRSVPFRIRVRLSRRRNDDEDSPHKLYTLVTWVPVPTFKELQTENV 136
F W I++VP R+RV LSR+RN+DE++ KLYT+ + V V +FK LQT+ V
Sbjct: 57 FLWSQG-----IKNVPHRVRVTLSRKRNEDENATEKLYTVASLVIVKSFKGLQTKKV 108
>sp|O65071|RL31_PICMA 60S ribosomal protein L31 OS=Picea mariana GN=RPL31 PE=2 SV=1
Length = 120
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 10/83 (12%)
Query: 44 KAYPSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMDIRSVPFRIRVRLS 103
K P + + K + K + + V V L+ +W + IRSVP R+RVR+S
Sbjct: 32 KMAPKAVKEIRKFAQKAMGTT--DVRLDVKLNKAVW--------SRGIRSVPRRMRVRIS 81
Query: 104 RRRNDDEDSPHKLYTLVTWVPVP 126
R+RND+ED+ +LY++VT VP
Sbjct: 82 RKRNDEEDAKDELYSIVTVAEVP 104
>sp|P51420|RL313_ARATH 60S ribosomal protein L31-3 OS=Arabidopsis thaliana GN=RPL31C PE=2
SV=2
Length = 119
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 44 KAYPSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMDIRSVPFRIRVRLS 103
K P I + K + K + + + V V L+ IW + IR P RIRVR++
Sbjct: 31 KKAPKAIKEIRKFAEKAMGTKDVRV--DVKLNKQIW--------SKGIRGPPRRIRVRVA 80
Query: 104 RRRNDDEDSPHKLYTLVTWVPVPT 127
R+RNDDED+ + ++LVT +P
Sbjct: 81 RKRNDDEDAKEEFFSLVTVAEIPA 104
>sp|Q9STR1|RL312_ARATH 60S ribosomal protein L31-2 OS=Arabidopsis thaliana GN=RPL31B PE=3
SV=1
Length = 119
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 44 KAYPSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMDIRSVPFRIRVRLS 103
K P I + K + K + + + V V L+ IW + IR P RIRVR++
Sbjct: 31 KKAPKAIKEIRKFAEKEMGTKDVRV--DVKLNKQIW--------SKGIRGPPRRIRVRVA 80
Query: 104 RRRNDDEDSPHKLYTLVTWVPVPT 127
R+RNDDED+ + ++LVT +P
Sbjct: 81 RKRNDDEDAKEEFFSLVTVAEIPA 104
>sp|Q9SLL7|RL311_ARATH 60S ribosomal protein L31-1 OS=Arabidopsis thaliana GN=RPL31A PE=3
SV=1
Length = 119
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 44 KAYPSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMDIRSVPFRIRVRLS 103
K P+ I + K + K + + + V V L+ IW + IR P RIRVR++
Sbjct: 31 KKAPNAIKEIRKFALKAMGTKDVRV--DVKLNKQIW--------SKGIRGPPRRIRVRVA 80
Query: 104 RRRNDDEDSPHKLYTLVTWVPVPT 127
R+RNDDED+ + ++LVT +P
Sbjct: 81 RKRNDDEDAKEEFFSLVTVAEIPA 104
>sp|Q22DH9|RL31_TETTS 60S ribosomal protein L31 OS=Tetrahymena thermophila (strain SB210)
GN=RPL31 PE=1 SV=1
Length = 111
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 80 FWWGTSLINMDIRSVPFRIRVRLSRRRNDDEDSPHKLYTLVTWVPVPTFKELQTENVDA 138
F W IR++P R+RVRL +R+N++E + + YTLV + V ++ L TE A
Sbjct: 57 FIWSNG-----IRNIPRRVRVRLCKRKNEEEGAQSQFYTLVQHLQVDSYHGLLTEKTKA 110
>sp|P45841|RL31_CHLRE 60S ribosomal protein L31 OS=Chlamydomonas reinhardtii GN=RPL31
PE=3 SV=1
Length = 116
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 21 KDKSKPSAATSYTIGGVK----VEFPVKAYPSQISMMTKESSKYISSMHLSVLCTVDLSC 76
K +SK YTI K F K P + + K +SK + + V V L+
Sbjct: 5 KSRSKEQVTREYTIHLSKRLHKTSFK-KCAPKAVKEIRKFASKVMGTS--DVRLDVKLNK 61
Query: 77 PIWFWWGTSLINMDIRSVPFRIRVRLSRRRNDDEDSPHKLYTLVT 121
+W + I++VP R+R+ +SRRRNDDED+ ++Y+ VT
Sbjct: 62 AVW--------SKGIKNVPTRLRIVISRRRNDDEDAKEEMYSFVT 98
>sp|Q3YK19|FANCJ_CHICK Fanconi anemia group J protein homolog OS=Gallus gallus GN=BRIP1
PE=2 SV=1
Length = 1252
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 27 SAATSYTIGGVKVEFPVKAYPSQISMMT 54
S + YTIGGVK+ FP KAYPSQ++MM
Sbjct: 3 SDVSQYTIGGVKIMFPCKAYPSQLAMMN 30
>sp|Q6FWF4|RL31_CANGA 60S ribosomal protein L31 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPL31
PE=3 SV=1
Length = 113
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 11/85 (12%)
Query: 59 KYISSMHLS---VLCTVDLSCPIWFWWGTSLINMDIRSVPFRIRVRLSRRRNDDEDSPHK 115
K + +H+ V +L+ IW ++ V FR+R+R+SR+RN++E++ +
Sbjct: 37 KKFAKLHMGTEDVRLAPELNQEIW--------KRGVKGVAFRLRLRISRKRNEEENAKNP 88
Query: 116 LYTLVTWVPVPTFKELQTENVDASA 140
L++ V V V + K LQT V+ A
Sbjct: 89 LFSYVEPVFVASAKGLQTTVVEEDA 113
>sp|Q5SXJ3|FANCJ_MOUSE Fanconi anemia group J protein homolog OS=Mus musculus GN=Brip1
PE=2 SV=1
Length = 1174
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 27 SAATSYTIGGVKVEFPVKAYPSQISMMTKESSKYISSMH 65
S + YTIGGVK+ FP +AYP+Q++MM SS H
Sbjct: 3 SVLSDYTIGGVKIHFPCRAYPAQLAMMNSIVRGLNSSQH 41
>sp|Q9U332|RL31_CAEEL 60S ribosomal protein L31 OS=Caenorhabditis elegans GN=rpl-31 PE=3
SV=1
Length = 122
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 37/48 (77%)
Query: 91 IRSVPFRIRVRLSRRRNDDEDSPHKLYTLVTWVPVPTFKELQTENVDA 138
I++VP+R+RVRLSRRRN+DEDS KLYTL T+VP F L NVD+
Sbjct: 73 IKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDS 120
>sp|P0C2H9|RL31B_YEAST 60S ribosomal protein L31-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL31B PE=1 SV=1
Length = 113
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 11/85 (12%)
Query: 59 KYISSMHLS---VLCTVDLSCPIWFWWGTSLINMDIRSVPFRIRVRLSRRRNDDEDSPHK 115
K + +H+ V +L+ IW ++ V +R+R+R+SR+RN++ED+ +
Sbjct: 37 KKFAKLHMGTEDVRLAPELNQAIW--------KRGVKGVEYRLRLRISRKRNEEEDAKNP 88
Query: 116 LYTLVTWVPVPTFKELQTENVDASA 140
L++ V V V + K LQT V+ A
Sbjct: 89 LFSYVEPVLVASAKGLQTVVVEEDA 113
>sp|P0C2H8|RL31A_YEAST 60S ribosomal protein L31-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL31A PE=1 SV=1
Length = 113
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 12/90 (13%)
Query: 54 TKESSKYISSMHLS---VLCTVDLSCPIWFWWGTSLINMDIRSVPFRIRVRLSRRRNDDE 110
KE K+ + +H+ V +L+ IW ++ V +R+R+R+SR+RN++E
Sbjct: 33 VKEIKKF-AKLHMGTDDVRLAPELNQAIW--------KRGVKGVEYRLRLRISRKRNEEE 83
Query: 111 DSPHKLYTLVTWVPVPTFKELQTENVDASA 140
D+ + L++ V V V + K LQT V+ A
Sbjct: 84 DAKNPLFSYVEPVLVASAKGLQTVVVEEDA 113
>sp|Q9BX63|FANCJ_HUMAN Fanconi anemia group J protein OS=Homo sapiens GN=BRIP1 PE=1 SV=1
Length = 1249
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 21/25 (84%)
Query: 30 TSYTIGGVKVEFPVKAYPSQISMMT 54
+ YTIGGVK+ FP KAYPSQ++MM
Sbjct: 6 SEYTIGGVKIYFPYKAYPSQLAMMN 30
>sp|Q2V4L8|GUN3_ARATH Endoglucanase 3 OS=Arabidopsis thaliana GN=CEL5 PE=2 SV=2
Length = 484
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 26 PSAATSYTIGGVKVEFPVK--AYPSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWG 83
PS++T YT GG+ + P Y + I+ + +KY+ S + C L P
Sbjct: 312 PSSSTKYTKGGLMYKLPQSNLQYVTSITFLLTTYAKYMKSTKQTFNCGNSLIVP------ 365
Query: 84 TSLINMDIRSVPFRIRV 100
+LIN+ R V + + V
Sbjct: 366 NALINLSKRQVDYVLGV 382
>sp|P46290|RL31_NICGU 60S ribosomal protein L31 OS=Nicotiana glutinosa GN=RPL31 PE=2 SV=1
Length = 120
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 107 NDDEDSPHKLYTLVTWVPVP 126
NDDED+ +LY+LVT +P
Sbjct: 85 NDDEDAKEELYSLVTVAEIP 104
>sp|Q9MAV7|RL31_PANGI 60S ribosomal protein L31 OS=Panax ginseng GN=RPL31 PE=2 SV=1
Length = 121
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 107 NDDEDSPHKLYTLVTWVPVP 126
NDDED+ +LY+LVT +P
Sbjct: 85 NDDEDAKEELYSLVTVAKIP 104
>sp|O65404|ERG11_ARATH Squalene monooxygenase 1,1 OS=Arabidopsis thaliana GN=SQP1,1 PE=2
SV=2
Length = 516
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 7 LENSQKLQAVLPSVKDKSKPSAATSYTIGGVKVEFPVKAYPSQISMMTKESSKYISS 63
L N+QK+ V+ S D KP +AT T+G + V + M + Y+SS
Sbjct: 368 LGNAQKISQVIKSFYDIRKPMSATVNTLGNAFSQVLVASTDEAKEAMRQGCYDYLSS 424
>sp|O00522|KRIT1_HUMAN Krev interaction trapped protein 1 OS=Homo sapiens GN=KRIT1 PE=1
SV=2
Length = 736
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 3 EDLLLENSQKLQAVLPSVKDKSKPSAATSYTIGGVKVEFPVKAYPSQISMMTKESSKYI- 61
E L NS+ Q +L V + +KP + + I G +V +K +P M +E+S +I
Sbjct: 55 ETKLQGNSEITQGILDYVVETTKPISPANQGIRGKRVVL-MKKFPLDGEKMGREASLFIV 113
Query: 62 -SSMHLSVLCTVDLSCPIWF 80
S + + T CPI++
Sbjct: 114 PSVVKDNTKYTYTPGCPIFY 133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,276,146
Number of Sequences: 539616
Number of extensions: 1606792
Number of successful extensions: 3661
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3625
Number of HSP's gapped (non-prelim): 40
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)