Query psy873
Match_columns 141
No_of_seqs 140 out of 367
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 17:45:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00193 60S ribosomal protein 100.0 7.7E-44 1.7E-48 285.0 10.5 113 15-138 71-188 (188)
2 KOG0893|consensus 100.0 1.1E-33 2.3E-38 215.4 6.2 103 21-134 13-119 (125)
3 PF01198 Ribosomal_L31e: Ribos 100.0 7.9E-31 1.7E-35 187.2 4.5 80 25-115 1-83 (83)
4 PRK01192 50S ribosomal protein 99.9 1E-27 2.2E-32 173.3 7.4 73 25-106 3-78 (89)
5 COG2097 RPL31A Ribosomal prote 99.9 7E-25 1.5E-29 159.1 7.7 76 26-116 5-83 (89)
6 KOG1132|consensus 92.9 0.043 9.3E-07 53.7 1.1 54 30-90 6-72 (945)
7 PF01781 Ribosomal_L38e: Ribos 83.9 2.1 4.6E-05 30.2 4.0 46 47-120 1-46 (69)
8 KOG3499|consensus 83.8 3.9 8.4E-05 28.8 5.3 26 47-72 2-27 (69)
9 PTZ00181 60S ribosomal protein 78.6 7.8 0.00017 28.2 5.5 24 47-70 2-25 (82)
10 PF02501 T2SI: Type II secreti 29.6 1.1E+02 0.0025 20.6 4.0 45 72-123 35-79 (81)
11 PF08635 ox_reductase_C: Putat 25.4 58 0.0013 25.9 2.2 16 45-60 1-16 (142)
12 PF04701 Pox_D2: Pox virus D2 24.6 54 0.0012 26.1 1.9 50 50-107 4-55 (143)
13 PF06257 DUF1021: Protein of u 20.7 1.5E+02 0.0032 21.1 3.3 33 47-97 2-34 (76)
No 1
>PTZ00193 60S ribosomal protein L31; Provisional
Probab=100.00 E-value=7.7e-44 Score=284.95 Aligned_cols=113 Identities=26% Similarity=0.376 Sum_probs=106.1
Q ss_pred hhcccccCCCCCCceEEEEEcCcc----CCCCCCChHHHHHHHHHHHHHHhcCCCcceEEecCCChhhhhhhhccccccc
Q psy873 15 AVLPSVKDKSKPSAATSYTIGGVK----VEFPVKAYPSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMD 90 (141)
Q Consensus 15 ~~~~~~~~~~~~~vt~eYTI~l~k----v~f~~krap~Aik~irkf~~k~mks~~~~V~id~~lN~~iW~~~~tsl~akG 90 (141)
|-|-.-+.+.++++|+|||||||| ++|+++ ||+||++|++|++|||++ ++|+||++||++|| ++|
T Consensus 71 ~~~~~~~~~~~e~VTREyTINLHKriHgv~fKKR-APrAIKeIRkFA~K~MgT--~DVRIDtrLNkaIW--------srG 139 (188)
T PTZ00193 71 ASLRKRTGRKPDNISMEATIHLSKLLKKKTFHKR-APIAIKRIKAFVGRLMKT--KDNRIDASLNTYIW--------HKG 139 (188)
T ss_pred HHHHHhhccCCCcceeEEEEeeeehhcCCCcccc-CHHHHHHHHHHHHHhcCC--CcEEECHHHHHHHH--------Hcc
Confidence 444455668899999999999998 899998 999999999999999999 59999999999999 999
Q ss_pred cccCCeeEEEEEeeccCCCCCCCCc-eeEEEEEEecCCCCCceeEEecC
Q psy873 91 IRSVPFRIRVRLSRRRNDDEDSPHK-LYTLVTWVPVPTFKELQTENVDA 138 (141)
Q Consensus 91 IrnvP~rIRVr~sRk~nededs~~K-lytlVt~VpV~tFKgLqT~~v~~ 138 (141)
|+|||+|||||++|++||||||+|| |||+|+||||++||||||++|++
T Consensus 140 IRnvP~RIRVRlsRKrNedEDs~~KklYTlVtyVpV~sFKgLqT~~Vdq 188 (188)
T PTZ00193 140 VKGVPGRVRVLVERKSETLEGGKRKHFYTVISNVPVASFKNLTTKVVEQ 188 (188)
T ss_pred CcCCCceEEEEEEeecCccccCcccceEEEEEEEEcCCccCceEEeccC
Confidence 9999999999999999999999997 99999999999999999999975
No 2
>KOG0893|consensus
Probab=100.00 E-value=1.1e-33 Score=215.38 Aligned_cols=103 Identities=41% Similarity=0.595 Sum_probs=97.0
Q ss_pred cCCCCCCceEEEEEcCcc----CCCCCCChHHHHHHHHHHHHHHhcCCCcceEEecCCChhhhhhhhccccccccccCCe
Q psy873 21 KDKSKPSAATSYTIGGVK----VEFPVKAYPSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMDIRSVPF 96 (141)
Q Consensus 21 ~~~~~~~vt~eYTI~l~k----v~f~~krap~Aik~irkf~~k~mks~~~~V~id~~lN~~iW~~~~tsl~akGIrnvP~ 96 (141)
..++.+.++++||||+|+ |.|+++ ||+|+++|+||++++||+ .||++|++||++|| ++||+|+|+
T Consensus 13 ~s~ine~vtre~tinihk~~h~v~fkK~-ap~alkeI~kFA~keMgt--~dv~~Dt~lnkavw--------akgirnv~~ 81 (125)
T KOG0893|consen 13 HSAINEVVTREYTINIHKRIHGVGFKKR-APRALKEIWKFAMKEMGT--PDVHVDTRLNKAVW--------EKGIRNVPY 81 (125)
T ss_pred ccchhhhhhhheecccccchhccchhhh-hHHHHHHHHHHHHHHhCC--ccceecchhhHHHH--------HhcccCCcc
Confidence 346788999999999998 899988 999999999999999999 49999999999999 999999999
Q ss_pred eEEEEEeeccCCCCCCCCceeEEEEEEecCCCCCceeE
Q psy873 97 RIRVRLSRRRNDDEDSPHKLYTLVTWVPVPTFKELQTE 134 (141)
Q Consensus 97 rIRVr~sRk~nededs~~KlytlVt~VpV~tFKgLqT~ 134 (141)
+||||++|++|+|||++++|||+++||||++|+++|..
T Consensus 82 ~irvrlsrk~n~~e~~~~~l~t~~t~v~~~~~~~~~~~ 119 (125)
T KOG0893|consen 82 RIRVRLSRKRNEDEDSPNKLYTQVTYVPVSHGKNPQGK 119 (125)
T ss_pred hhhcccccccccccccchhheeeEEEEeecccccccce
Confidence 99999999999999999999999999999999995443
No 3
>PF01198 Ribosomal_L31e: Ribosomal protein L31e; InterPro: IPR000054 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial large subunit ribosomal proteins can be grouped on the basis of sequence similarities. These proteins have 87 to 128 amino-acid residues. This family consists of: Yeast L34 Archaeal L31 [] Plants L31 Mammalian L31 [] ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3G6E_X 3I56_X 1YIT_X 1NJI_Y 3CC4_X 1VQM_X 1KC8_Y 1VQ9_X 1VQN_X 1M1K_Y ....
Probab=99.96 E-value=7.9e-31 Score=187.18 Aligned_cols=80 Identities=35% Similarity=0.515 Sum_probs=72.3
Q ss_pred CCCceEEEEEcCcc---CCCCCCChHHHHHHHHHHHHHHhcCCCcceEEecCCChhhhhhhhccccccccccCCeeEEEE
Q psy873 25 KPSAATSYTIGGVK---VEFPVKAYPSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMDIRSVPFRIRVR 101 (141)
Q Consensus 25 ~~~vt~eYTI~l~k---v~f~~krap~Aik~irkf~~k~mks~~~~V~id~~lN~~iW~~~~tsl~akGIrnvP~rIRVr 101 (141)
++++||+|||||++ ++|+++ ||+||++|++|+++||+++ +|+||++||++|| ++||++||++|||+
T Consensus 1 ~~~v~re~TInL~k~~~~~~~kR-A~rAvk~Ir~f~~k~mkt~--dV~iD~~lN~~IW--------srGi~~pP~rIRVr 69 (83)
T PF01198_consen 1 KEVVTREYTINLRKVHGVPFKKR-APRAVKEIRKFAQKHMKTE--DVKIDPELNKAIW--------SRGIRKPPRRIRVR 69 (83)
T ss_dssp TSSEEEEEEEECHHHCCSSGGGH-HHHHHHHHHHHHHHHHTTS--CEEE-HHHHHHHH--------TTTSSS--SEEEEE
T ss_pred CCceeEEEEEechhhcCCCCccc-CHHHHHHHHHHHHHHhCCC--ceEEchHHHHHHH--------hcccCCCCceEEEE
Confidence 47899999999998 566666 9999999999999999995 9999999999999 99999999999999
Q ss_pred EeeccCCCCCCCCc
Q psy873 102 LSRRRNDDEDSPHK 115 (141)
Q Consensus 102 ~sRk~nededs~~K 115 (141)
++|++++|||+++|
T Consensus 70 ~~r~~~~~e~~~~~ 83 (83)
T PF01198_consen 70 VSRKEEEDEDAKEK 83 (83)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEcccCCCCCCCC
Confidence 99999999999876
No 4
>PRK01192 50S ribosomal protein L31e; Reviewed
Probab=99.94 E-value=1e-27 Score=173.34 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=68.2
Q ss_pred CCCceEEEEEcCcc---CCCCCCChHHHHHHHHHHHHHHhcCCCcceEEecCCChhhhhhhhccccccccccCCeeEEEE
Q psy873 25 KPSAATSYTIGGVK---VEFPVKAYPSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMDIRSVPFRIRVR 101 (141)
Q Consensus 25 ~~~vt~eYTI~l~k---v~f~~krap~Aik~irkf~~k~mks~~~~V~id~~lN~~iW~~~~tsl~akGIrnvP~rIRVr 101 (141)
.+.+|++|||||++ ++|++| ||+||++|++|+++||+++.++|+||++||++|| ++||+|||+|||||
T Consensus 3 ~~~~~r~yTInLrk~~~~~~~kR-A~rAik~Ir~f~~k~mkt~~~~V~iD~~lN~~IW--------~rGi~~~P~riRVr 73 (89)
T PRK01192 3 KEVEERIYTIPLRDVKKVPRTKR-ADRAVKLVREFLARHFKADEDKVKIDPSINEKIW--------ERGREKPPSKVRVR 73 (89)
T ss_pred CcceEEEEEEeCeeccCCCcccc-CHHHHHHHHHHHHHHhCCCCCcEEEChHHHHHHH--------HccCCCCCceEEEE
Confidence 46789999999998 678877 9999999999999999996679999999999999 99999999999999
Q ss_pred Eeecc
Q psy873 102 LSRRR 106 (141)
Q Consensus 102 ~sRk~ 106 (141)
++|+.
T Consensus 74 ~~rk~ 78 (89)
T PRK01192 74 VAKKG 78 (89)
T ss_pred EEEec
Confidence 99974
No 5
>COG2097 RPL31A Ribosomal protein L31E [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=7e-25 Score=159.12 Aligned_cols=76 Identities=24% Similarity=0.337 Sum_probs=69.3
Q ss_pred CCceEEEEEcCcc---CCCCCCChHHHHHHHHHHHHHHhcCCCcceEEecCCChhhhhhhhccccccccccCCeeEEEEE
Q psy873 26 PSAATSYTIGGVK---VEFPVKAYPSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMDIRSVPFRIRVRL 102 (141)
Q Consensus 26 ~~vt~eYTI~l~k---v~f~~krap~Aik~irkf~~k~mks~~~~V~id~~lN~~iW~~~~tsl~akGIrnvP~rIRVr~ 102 (141)
.+.|++||||||+ +++++| ||+|+++|++|+++||+++ .|+||++||++|| ++||++||++|||++
T Consensus 5 ~~~er~ytI~LR~~~~v~r~kR-A~rAVk~ir~fv~rHmk~e--~V~id~~lNe~iW--------~rG~ekpP~klRVrv 73 (89)
T COG2097 5 VVVERIYTIPLRRAKKVPRTKR-APRAVKIIRKFVARHMKAE--EVRIDPSLNEKIW--------ERGIEKPPSKLRVRV 73 (89)
T ss_pred ccceEEEEEEchhhccCCcccc-chHHHHHHHHHHHHHhCCc--eEEECHHHhHHHH--------HhhccCCCceEEEEE
Confidence 7899999999998 677777 9999999999999999995 9999999999999 999999999999999
Q ss_pred eeccCCCCCCCCce
Q psy873 103 SRRRNDDEDSPHKL 116 (141)
Q Consensus 103 sRk~nededs~~Kl 116 (141)
+++ ||.....
T Consensus 74 ~k~----edg~~~v 83 (89)
T COG2097 74 SKF----EDGTVEV 83 (89)
T ss_pred EEe----cCCeEEE
Confidence 997 5554443
No 6
>KOG1132|consensus
Probab=92.91 E-value=0.043 Score=53.74 Aligned_cols=54 Identities=35% Similarity=0.624 Sum_probs=46.1
Q ss_pred EEEEEc-CccCCCCCCChHHHHHHHHHHHHHHhcCCC------------cceEEecCCChhhhhhhhccccccc
Q psy873 30 TSYTIG-GVKVEFPVKAYPSQISMMTKESSKYISSMH------------LSVLCTVDLSCPIWFWWGTSLINMD 90 (141)
Q Consensus 30 ~eYTI~-l~kv~f~~krap~Aik~irkf~~k~mks~~------------~~V~id~~lN~~iW~~~~tsl~akG 90 (141)
-+++|+ |..|.||..+||.|+.+|.+.+..++..++ +.++|++ ||||.++.++-
T Consensus 6 ~~~~i~~Gv~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~-------LAW~q~~k~~~ 72 (945)
T KOG1132|consen 6 PKIVINIGVPVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCST-------LAWQQHLKSRK 72 (945)
T ss_pred cceEeccCceeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHH-------HHHHHHhhccc
Confidence 457777 889999999999999999999999887665 5678888 99999998543
No 7
>PF01781 Ribosomal_L38e: Ribosomal L38e protein family; InterPro: IPR002675 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L38e forms part of the 60S ribosomal subunit []. This family is found in eukaryotes.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZS_n 3IZR_n 4A1D_P 4A19_P 4A18_P 4A1B_P.
Probab=83.91 E-value=2.1 Score=30.16 Aligned_cols=46 Identities=30% Similarity=0.247 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEEecCCChhhhhhhhccccccccccCCeeEEEEEeeccCCCCCCCCceeEEE
Q psy873 47 PSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMDIRSVPFRIRVRLSRRRNDDEDSPHKLYTLV 120 (141)
Q Consensus 47 p~Aik~irkf~~k~mks~~~~V~id~~lN~~iW~~~~tsl~akGIrnvP~rIRVr~sRk~nededs~~KlytlV 120 (141)
|++|..|++|+....+.+...|+|-. .-.+. .+..||.+| -|||+|
T Consensus 1 Pkqi~~iK~FL~~arrkDAksv~iKk-----------------~~~~~-tKFKvRcsr----------yLYTLv 46 (69)
T PF01781_consen 1 PKQIKDIKDFLETARRKDAKSVKIKK-----------------NKDNG-TKFKVRCSR----------YLYTLV 46 (69)
T ss_dssp -THHHHHHHHHHHHCSS-EEEEEEEC-----------------ESSST-EEEEEECSS-----------EEEES
T ss_pred CcchhhHHHHHHHHhhCCCceEEEEe-----------------cCCCe-eEEEEEecc----------eEEEEE
Confidence 78999999999998887655555542 11111 777888888 488876
No 8
>KOG3499|consensus
Probab=83.84 E-value=3.9 Score=28.81 Aligned_cols=26 Identities=19% Similarity=-0.012 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEEec
Q psy873 47 PSQISMMTKESSKYISSMHLSVLCTV 72 (141)
Q Consensus 47 p~Aik~irkf~~k~mks~~~~V~id~ 72 (141)
|++|.+|+.|+...-..+...++|-.
T Consensus 2 pr~i~eiK~FL~~arR~Da~s~kiKk 27 (69)
T KOG3499|consen 2 PRQITEIKDFLLTARRKDAKSVKIKK 27 (69)
T ss_pred cchHHHHHHHHHHHHhcccceeEEEe
Confidence 88999999999998888666666654
No 9
>PTZ00181 60S ribosomal protein L38; Provisional
Probab=78.61 E-value=7.8 Score=28.24 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEE
Q psy873 47 PSQISMMTKESSKYISSMHLSVLC 70 (141)
Q Consensus 47 p~Aik~irkf~~k~mks~~~~V~i 70 (141)
|++|..|+.|+...-+.+...|+|
T Consensus 2 PkeI~dIK~FL~~arrkDAksvkI 25 (82)
T PTZ00181 2 PREIKTLKEFLAICSRKDARCVKV 25 (82)
T ss_pred chhHHHHHHHHHHhhccCceEEEe
Confidence 889999999999988876566666
No 10
>PF02501 T2SI: Type II secretion system (T2SS), protein I; InterPro: IPR003413 The bacterial general secretion pathway (GSP) is involved in the export of proteins (also called the type II pathway). This family includes GSPI and GSPJ, which contain the pre-pilin signal sequence [].; GO: 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex; PDB: 2RET_G 3CFI_G 3CI0_I.
Probab=29.58 E-value=1.1e+02 Score=20.56 Aligned_cols=45 Identities=29% Similarity=0.522 Sum_probs=25.7
Q ss_pred cCCChhhhhhhhccccccccccCCeeEEEEEeeccCCCCCCCCceeEEEEEE
Q psy873 72 VDLSCPIWFWWGTSLINMDIRSVPFRIRVRLSRRRNDDEDSPHKLYTLVTWV 123 (141)
Q Consensus 72 ~~lN~~iW~~~~tsl~akGIrnvP~rIRVr~sRk~nededs~~KlytlVt~V 123 (141)
......=| .|+.....-+..+ -.+|.|.+. +++...-++++++|+
T Consensus 35 ~~~~g~~W-~w~~~v~~t~~~~-l~rv~v~V~-----~~~~~~~l~~L~~~~ 79 (81)
T PF02501_consen 35 VEMAGREW-YWRQEVSPTPDPG-LRRVEVQVS-----DEDQEQPLASLSTFV 79 (81)
T ss_dssp EEETTEEE-EEEEEEE--SSSS-EEEEEEEEE-----STTSSSECEEEEEEE
T ss_pred EEeCCceE-EEEEEEEECCCCC-EEEEEEEEe-----cCCCCceEEEEEEEE
Confidence 33344445 4555544443332 356666666 566667899999987
No 11
>PF08635 ox_reductase_C: Putative oxidoreductase C terminal; InterPro: IPR013944 This is the C terminus of putative oxidoreductases.
Probab=25.39 E-value=58 Score=25.92 Aligned_cols=16 Identities=13% Similarity=0.169 Sum_probs=14.2
Q ss_pred ChHHHHHHHHHHHHHH
Q psy873 45 AYPSQISMMTKESSKY 60 (141)
Q Consensus 45 rap~Aik~irkf~~k~ 60 (141)
||-.++.+|++++...
T Consensus 1 RYl~~vq~~K~ii~en 16 (142)
T PF08635_consen 1 RYLKAVQKMKQIIKEN 16 (142)
T ss_pred CchHHHHHHHHHHHhc
Confidence 5889999999999875
No 12
>PF04701 Pox_D2: Pox virus D2 protein; InterPro: IPR006791 This entry represents the Pox virus D2 proteins.
Probab=24.56 E-value=54 Score=26.10 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcCCCcceEEecCCChhhhhhhhccccccccccCCeeEEE--EEeeccC
Q psy873 50 ISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMDIRSVPFRIRV--RLSRRRN 107 (141)
Q Consensus 50 ik~irkf~~k~mks~~~~V~id~~lN~~iW~~~~tsl~akGIrnvP~rIRV--r~sRk~n 107 (141)
++.+..+++. -.+.|-.|+ +.| +.|..-+.++|-+..|++|++ +++|+.|
T Consensus 4 ikkl~nii~n------~~i~fp~di-~~i-~~e~~ivle~~~~G~~~~iHiyd~~aRFDN 55 (143)
T PF04701_consen 4 IKKLTNIIQN------ANIVFPDDI-KKI-YNEKFIVLERGLNGTPYRIHIYDNAARFDN 55 (143)
T ss_pred HHHHHHHHHh------CCccChHHH-HHH-hhCCeEEEEEcCCCCEEEeeeechhhcccc
Confidence 4556666554 356777777 444 579999999999999999998 5666544
No 13
>PF06257 DUF1021: Protein of unknown function (DUF1021); InterPro: IPR009366 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FB9_A.
Probab=20.73 E-value=1.5e+02 Score=21.07 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEEecCCChhhhhhhhccccccccccCCee
Q psy873 47 PSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMDIRSVPFR 97 (141)
Q Consensus 47 p~Aik~irkf~~k~mks~~~~V~id~~lN~~iW~~~~tsl~akGIrnvP~r 97 (141)
|..|..||+-+..|.|. .|.+-+ .+|.+++=-|
T Consensus 2 ~~~l~~Ik~~l~~~vG~---~V~l~a---------------~~GRkK~~~r 34 (76)
T PF06257_consen 2 PNTLADIKKELESHVGK---RVKLKA---------------NKGRKKIIER 34 (76)
T ss_dssp HHHHHHHHHHHHHTTTS---EEEEEE-----------------SSS--S-E
T ss_pred cchHHHHHHHHHHcCCC---EEEEEE---------------cCCceEEEEE
Confidence 67899999999999998 788888 7888877544
Done!