Query psy873
Match_columns 141
No_of_seqs 140 out of 367
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 17:45:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_d L34, YL28, 60S ribosoma 100.0 2.6E-49 8.8E-54 295.6 9.9 107 22-139 2-112 (113)
2 4a17_W RPL31, 60S ribosomal pr 100.0 7E-49 2.4E-53 292.5 9.2 105 24-139 3-111 (111)
3 2zkr_x 60S ribosomal protein L 100.0 1.7E-47 5.7E-52 290.0 3.7 107 22-139 15-125 (125)
4 3iz5_g 60S ribosomal protein L 100.0 4.2E-48 1.4E-52 292.7 -0.6 108 22-140 10-123 (123)
5 3j21_a 50S ribosomal protein L 100.0 1.7E-31 5.8E-36 194.4 8.5 78 25-113 4-85 (95)
6 1vq8_X 50S ribosomal protein L 100.0 6.5E-31 2.2E-35 190.1 5.9 78 24-110 3-83 (92)
7 3izc_n 60S ribosomal protein R 76.4 1.7 5.9E-05 30.3 2.7 49 47-105 2-50 (78)
8 2nr1_A NR1 M2, M2; receptor, s 65.5 0.98 3.3E-05 25.9 -0.5 13 74-86 9-21 (27)
9 4gnt_B Carbohydrate-responsive 59.0 1.4 4.7E-05 24.9 -0.7 18 73-90 5-22 (26)
10 4a18_P RPL38, ribosomal protei 42.2 8.4 0.00029 27.4 1.0 54 47-121 2-55 (89)
11 3ci0_I Pseudopilin GSPI; gener 24.2 89 0.003 20.5 3.8 49 70-124 40-88 (89)
12 1r6f_A Virulence-associated V 22.1 39 0.0013 28.6 1.9 20 45-64 275-294 (310)
No 1
>3u5e_d L34, YL28, 60S ribosomal protein L31-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_M 2ww9_M 3izc_g 3izs_g 2wwb_M 3o5h_a 3o58_a 3u5i_d 4b6a_d 1s1i_W 3jyw_W
Probab=100.00 E-value=2.6e-49 Score=295.63 Aligned_cols=107 Identities=30% Similarity=0.453 Sum_probs=101.8
Q ss_pred CCCCCCceEEEEEcCcc----CCCCCCChHHHHHHHHHHHHHHhcCCCcceEEecCCChhhhhhhhccccccccccCCee
Q psy873 22 DKSKPSAATSYTIGGVK----VEFPVKAYPSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMDIRSVPFR 97 (141)
Q Consensus 22 ~~~~~~vt~eYTI~l~k----v~f~~krap~Aik~irkf~~k~mks~~~~V~id~~lN~~iW~~~~tsl~akGIrnvP~r 97 (141)
.++.+++|||||||||| ++|++| ||+|+++|++|++||||++ ||+||++||++|| ++||+|||+|
T Consensus 2 sa~~evvtreyTInlhK~ihgv~fkKr-AprAlkeIrkFa~K~Mgt~--dV~ID~~LNk~vW--------akGirnvP~r 70 (113)
T 3u5e_d 2 AGLKDVVTREYTINLHKRLHGVSFKKR-APRAVKEIKKFAKLHMGTD--DVRLAPELNQAIW--------KRGVKGVEYR 70 (113)
T ss_dssp --CCCCEEEEEEEEHHHHHTTCCTTTH-HHHHHHHHHHHHHHHHCCS--CEEECHHHHHHHH--------TTCTTCCCSE
T ss_pred CcccCceeeEEEEeCcceeccCCCccc-CHHHHHHHHHHHHHHcCCC--ceEECcHHHHHHH--------hccccCCCce
Confidence 46788999999999998 789988 9999999999999999994 9999999999999 9999999999
Q ss_pred EEEEEeeccCCCCCCCCceeEEEEEEecCCCCCceeEEecCC
Q psy873 98 IRVRLSRRRNDDEDSPHKLYTLVTWVPVPTFKELQTENVDAS 139 (141)
Q Consensus 98 IRVr~sRk~nededs~~KlytlVt~VpV~tFKgLqT~~v~~~ 139 (141)
||||++|++||||||+|||||+||||||+|||||||++|+++
T Consensus 71 IrVrlsRk~nededs~~klytlvt~v~v~tfk~L~t~~v~~~ 112 (113)
T 3u5e_d 71 LRLRISRKRNEEEDAKNPLFSYVEPVLVASAKGLQTVVVEED 112 (113)
T ss_dssp EEEEEEEEECCSSCCSSSEEEEEEECCCSCCSSCCCEEECCC
T ss_pred EEEEEEEecCCCCCCccccEEEEEEEEcCCccCceEEEeccC
Confidence 999999999999999999999999999999999999999975
No 2
>4a17_W RPL31, 60S ribosomal protein L31; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_W 4a1c_W 4a1e_W
Probab=100.00 E-value=7e-49 Score=292.53 Aligned_cols=105 Identities=30% Similarity=0.483 Sum_probs=101.0
Q ss_pred CCCCceEEEEEcCcc----CCCCCCChHHHHHHHHHHHHHHhcCCCcceEEecCCChhhhhhhhccccccccccCCeeEE
Q psy873 24 SKPSAATSYTIGGVK----VEFPVKAYPSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMDIRSVPFRIR 99 (141)
Q Consensus 24 ~~~~vt~eYTI~l~k----v~f~~krap~Aik~irkf~~k~mks~~~~V~id~~lN~~iW~~~~tsl~akGIrnvP~rIR 99 (141)
+.+++|||||||||| ++|++| ||+|+++|++|++||||++ ||+||++||++|| ++||+|||+|||
T Consensus 3 ~~~vvtreyTInlhK~ihgv~fkKr-AprAlkeIrkFa~K~Mgt~--dV~ID~~LNk~vW--------akGirnvP~rIr 71 (111)
T 4a17_W 3 KQEEKSIDTTVNLHKQCHKISFKKK-APRAIREIVAIAKKTMGTD--DVRIDTELNKFIW--------SNGIRNIPRRVR 71 (111)
T ss_dssp CCCCCEEEEEEEHHHHTTTCCGGGH-HHHHHHHHHHHHHHHHCCS--CEEECHHHHHHHH--------TTCSSSCCSEEE
T ss_pred CCcceEEEEEEECeeeeecCCcccc-CHHHHHHHHHHHHHHcCCC--ceEECcHHHHHHH--------hccccCCCcEEE
Confidence 568999999999998 788888 9999999999999999994 9999999999999 999999999999
Q ss_pred EEEeeccCCCCCCCCceeEEEEEEecCCCCCceeEEecCC
Q psy873 100 VRLSRRRNDDEDSPHKLYTLVTWVPVPTFKELQTENVDAS 139 (141)
Q Consensus 100 Vr~sRk~nededs~~KlytlVt~VpV~tFKgLqT~~v~~~ 139 (141)
||++|++||||||+|||||+|+||||+|||||||++|+++
T Consensus 72 VrlsRk~nededs~~klytlvt~v~v~tfk~L~t~~v~~~ 111 (111)
T 4a17_W 72 VRLCKRKNEEEGAQSQFYTLVQHLQVDSYHGLLTEKTKAE 111 (111)
T ss_dssp EEEEEEECCCSSCSSSEEEEEEEECCSCGGGCCCEECCCC
T ss_pred EEEEEecCCCCCCCCCcEEEEEEEEcCCcccceEEEeccC
Confidence 9999999999999999999999999999999999999864
No 3
>2zkr_x 60S ribosomal protein L31; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.7e-47 Score=289.96 Aligned_cols=107 Identities=47% Similarity=0.696 Sum_probs=74.1
Q ss_pred CCCCCCceEEEEEcCcc----CCCCCCChHHHHHHHHHHHHHHhcCCCcceEEecCCChhhhhhhhccccccccccCCee
Q psy873 22 DKSKPSAATSYTIGGVK----VEFPVKAYPSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMDIRSVPFR 97 (141)
Q Consensus 22 ~~~~~~vt~eYTI~l~k----v~f~~krap~Aik~irkf~~k~mks~~~~V~id~~lN~~iW~~~~tsl~akGIrnvP~r 97 (141)
.++.+++|+|||||||| ++|++| ||+||++|++|++||||++ ||+||++||++|| ++||+|||+|
T Consensus 15 s~~~evvtreyTInL~K~ihgv~fkKR-AprAik~IrkFa~K~Mgt~--dVrID~~LNk~IW--------skGirnvP~r 83 (125)
T 2zkr_x 15 SAINEVVTREYTINIHKRIHGVGFKKR-APRALKEIRKFAMKEMGTP--DVRIDTRLNKAVW--------AKGIRNVPYR 83 (125)
T ss_dssp -------CEEEEEECHHHHSSBSSSBH-HHHHHHHHHHHHHHHHTCS--SCCCCHHHHHHHH--------TTCSSCCCSE
T ss_pred cccccceeeEEEeccccccccCCCCcc-CHHHHHHHHHHHHHhcCCC--cEEECHHHHHHHH--------hccCCCCCce
Confidence 56789999999999996 789888 9999999999999999994 9999999999999 9999999999
Q ss_pred EEEEEeeccCCCCCCCCceeEEEEEEecCCCCCceeEEecCC
Q psy873 98 IRVRLSRRRNDDEDSPHKLYTLVTWVPVPTFKELQTENVDAS 139 (141)
Q Consensus 98 IRVr~sRk~nededs~~KlytlVt~VpV~tFKgLqT~~v~~~ 139 (141)
||||++|++||||||+|||||+|+||||++||||||++|+++
T Consensus 84 IRVrlsRk~nededs~~klytlv~~v~v~~fk~L~t~~v~~~ 125 (125)
T 2zkr_x 84 IRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125 (125)
T ss_dssp EEEEEEEETTTTEEEEEC------------------------
T ss_pred EEEEEEEeccCCCCCccccEEEEEEEEcCcccCceEEEeecC
Confidence 999999999999999999999999999999999999999864
No 4
>3iz5_g 60S ribosomal protein L31 (L31E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_g 2go5_6 2j37_6
Probab=100.00 E-value=4.2e-48 Score=292.67 Aligned_cols=108 Identities=36% Similarity=0.542 Sum_probs=101.4
Q ss_pred CCCCCCceEEEEEcCcc----CCCCCCChHHHHHHHHHHHHHHhcCCCcceEEecCCChhhhhhhhccccccccccCCee
Q psy873 22 DKSKPSAATSYTIGGVK----VEFPVKAYPSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMDIRSVPFR 97 (141)
Q Consensus 22 ~~~~~~vt~eYTI~l~k----v~f~~krap~Aik~irkf~~k~mks~~~~V~id~~lN~~iW~~~~tsl~akGIrnvP~r 97 (141)
.++.+++|||||||||| ++|++| ||+||++|++|++||||++ ||+||++||++|| ++||+|||+|
T Consensus 10 ~~~~evvtreyTInlhK~ihgv~fkKR-AprAlKeIrkFa~K~Mgt~--dVrID~~LNkaVW--------akGirnvP~r 78 (123)
T 3iz5_g 10 TRKDEVVTREYTINLHKRLHGCTFKKK-APNAIKEIRKFAQKAMGTT--DIRIDVKLNKAIW--------TNGIRSVPRR 78 (123)
T ss_dssp SCCCSCCEEEEEEECHHHHHHSCTTTC-HHHHHHHHHHHHHHHHTCS--CBCCCHHHHHHHH--------TTCSSCCCSE
T ss_pred ccccCceeeEEEEeCchhcccCCCccc-CHHHHHHHHHHHHHHcCCC--ceEECcHHHHHHH--------HccccCCCce
Confidence 45678999999999998 799988 9999999999999999994 9999999999999 9999999999
Q ss_pred EEEEEeeccCCCCCCCCceeEEEEEEec--CCCCCceeEEecCCC
Q psy873 98 IRVRLSRRRNDDEDSPHKLYTLVTWVPV--PTFKELQTENVDASA 140 (141)
Q Consensus 98 IRVr~sRk~nededs~~KlytlVt~VpV--~tFKgLqT~~v~~~~ 140 (141)
||||++|++||||||+|||||+|||||| +|||||||++|+++|
T Consensus 79 IRVrlsRk~nededs~~klytlvt~v~v~~~tfk~L~t~~v~~~~ 123 (123)
T 3iz5_g 79 VRVRISRKRNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVEDEE 123 (123)
T ss_dssp EEEEEEEETTTTEEEEEECCCSSCCCCCHHHHHHHHHHHSCC---
T ss_pred EEEEEEEecCCCCCCccccEEEEEEEEecCCCccCceEEEeccCC
Confidence 9999999999999999999999999999 999999999999875
No 5
>3j21_a 50S ribosomal protein L31E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.97 E-value=1.7e-31 Score=194.36 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=74.7
Q ss_pred CCCceEEEEEcCcc----CCCCCCChHHHHHHHHHHHHHHhcCCCcceEEecCCChhhhhhhhccccccccccCCeeEEE
Q psy873 25 KPSAATSYTIGGVK----VEFPVKAYPSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMDIRSVPFRIRV 100 (141)
Q Consensus 25 ~~~vt~eYTI~l~k----v~f~~krap~Aik~irkf~~k~mks~~~~V~id~~lN~~iW~~~~tsl~akGIrnvP~rIRV 100 (141)
++.+|++||||||| ++|+++ ||+|+++|++|++||||++ ||+||++||++|| ++||+|||+||||
T Consensus 4 ~e~vtreyTInlhK~~hgv~fkKr-AprAlkeIrkFa~K~mgt~--dV~ID~~LNk~vW--------akGirnvP~rIrV 72 (95)
T 3j21_a 4 KAGEEVIFTVPIKKIKKIVPRWKR-APRAVKFVREFVARHAKAQ--EVIIDPKVNEKIW--------ERGIEKPPSKLRV 72 (95)
T ss_dssp CCSSCEEEEEECTTHHHHBCSGGG-HHHHHHHHHHHHHHHHTCS--SCEECHHHHHHHH--------TTCSSCCCSEEEE
T ss_pred CCCceEEEEEEChheecCCCcccc-CHHHHHHHHHHHHHhcCCC--cEEEChHHHHHHH--------hccccCCCCeEEE
Confidence 68899999999999 899988 9999999999999999995 9999999999999 9999999999999
Q ss_pred EEeeccCCCCCCC
Q psy873 101 RLSRRRNDDEDSP 113 (141)
Q Consensus 101 r~sRk~nededs~ 113 (141)
|++|++||||+..
T Consensus 73 rlsRk~ne~e~~~ 85 (95)
T 3j21_a 73 KVKVEEEKREGEE 85 (95)
T ss_dssp EEEEECCCSSSCS
T ss_pred EEEEeccCCCCCc
Confidence 9999999999765
No 6
>1vq8_X 50S ribosomal protein L31E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.29.1.1 PDB: 1vq4_X* 1vq5_X* 1vq6_X* 1vq7_X* 1s72_X* 1vq9_X* 1vqk_X* 1vql_X* 1vqm_X* 1vqn_X* 1vqo_X* 1vqp_X* 1yhq_X* 1yi2_X* 1yij_X* 1yit_X* 1yj9_X* 1yjn_X* 1yjw_X* 2otj_X* ...
Probab=99.96 E-value=6.5e-31 Score=190.11 Aligned_cols=78 Identities=17% Similarity=0.139 Sum_probs=68.4
Q ss_pred CCCCceEEEEEcCcc---CCCCCCChHHHHHHHHHHHHHHhcCCCcceEEecCCChhhhhhhhccccccccccCCeeEEE
Q psy873 24 SKPSAATSYTIGGVK---VEFPVKAYPSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMDIRSVPFRIRV 100 (141)
Q Consensus 24 ~~~~vt~eYTI~l~k---v~f~~krap~Aik~irkf~~k~mks~~~~V~id~~lN~~iW~~~~tsl~akGIrnvP~rIRV 100 (141)
..+.+|++||||||| ++|++| ||+||++|++|++||||+++++|+||++||++|| ++||+|||+||||
T Consensus 3 ~~~~vtreyTInl~ki~~~~~kkR-AprAik~Irkfa~k~m~t~~~dVriD~~LNk~iW--------~rGir~vP~rIRV 73 (92)
T 1vq8_X 3 ASDFEERVVTIPLRDARAEPNHKR-ADKAMILIREHLAKHFSVDEDAVRLDPSINEAAW--------ARGRANTPSKIRV 73 (92)
T ss_dssp -----CEEEEEECGGGGGSCGGGH-HHHHHHHHHHHHHHHTTCCGGGEEECHHHHHHHT--------TTCSSCCCSEEEE
T ss_pred cccceeEEEEEEhHHhcCCCcccc-CHHHHHHHHHHHHHHhCCCcccEEECcHHHHHHH--------hcccCCCCceEEE
Confidence 457899999999999 688777 9999999999999999997679999999999999 9999999999999
Q ss_pred EEeeccCCCC
Q psy873 101 RLSRRRNDDE 110 (141)
Q Consensus 101 r~sRk~nede 110 (141)
|++|+++|+|
T Consensus 74 r~sR~~edGe 83 (92)
T 1vq8_X 74 RAARFEEEGE 83 (92)
T ss_dssp EEEEETTTTE
T ss_pred EEEEEccCCc
Confidence 9999966554
No 7
>3izc_n 60S ribosomal protein RPL38 (L38E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_n 3u5e_k 3u5i_k 4b6a_k
Probab=76.37 E-value=1.7 Score=30.26 Aligned_cols=49 Identities=8% Similarity=-0.051 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEEecCCChhhhhhhhccccccccccCCeeEEEEEeec
Q psy873 47 PSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMDIRSVPFRIRVRLSRR 105 (141)
Q Consensus 47 p~Aik~irkf~~k~mks~~~~V~id~~lN~~iW~~~~tsl~akGIrnvP~rIRVr~sRk 105 (141)
|++|..|+.|+.-.-+.+...|+|-. |...= +.|....-.+..||.+|-
T Consensus 2 Pkei~dIK~Fl~~arrkDAksv~IKk--nk~~~--------~~g~~~~~tKFKvRcsry 50 (78)
T 3izc_n 2 AREITDIKQFLELTRRADVKTATVKI--NKKLN--------KAGKPFRQTKFKVRGSSS 50 (78)
T ss_dssp CTHHHHHHHHHHHHCCSCEEEEEEEC--CCCCC--------TTTSSCCCCEEEEEESSC
T ss_pred ChhHHHHHHHHHHHhhCCCeeEEEEe--ccccc--------cccccccceEEEEEeccc
Confidence 78999999999998887666777753 43333 455544556778888883
No 8
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=65.55 E-value=0.98 Score=25.92 Aligned_cols=13 Identities=54% Similarity=1.272 Sum_probs=10.5
Q ss_pred CChhhhhhhhccc
Q psy873 74 LSCPIWFWWGTSL 86 (141)
Q Consensus 74 lN~~iW~~~~tsl 86 (141)
+..++||.|++-|
T Consensus 9 l~aa~wF~WGvll 21 (27)
T 2nr1_A 9 LSSAMWFSWGVLL 21 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhe
Confidence 4468999999876
No 9
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=59.03 E-value=1.4 Score=24.89 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=12.7
Q ss_pred CCChhhhhhhhccccccc
Q psy873 73 DLSCPIWFWWGTSLINMD 90 (141)
Q Consensus 73 ~lN~~iW~~~~tsl~akG 90 (141)
+||.+||-||--.-.++.
T Consensus 5 rlnnaiwrawyiqyve~~ 22 (26)
T 4gnt_B 5 RLNNAIWRAWYIQYVQRX 22 (26)
T ss_dssp HHHHHHHHHHHHHHTTC-
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 589999999965544443
No 10
>4a18_P RPL38, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_P 4a1b_P 4a1d_P
Probab=42.21 E-value=8.4 Score=27.40 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEEecCCChhhhhhhhccccccccccCCeeEEEEEeeccCCCCCCCCceeEEEE
Q psy873 47 PSQISMMTKESSKYISSMHLSVLCTVDLSCPIWFWWGTSLINMDIRSVPFRIRVRLSRRRNDDEDSPHKLYTLVT 121 (141)
Q Consensus 47 p~Aik~irkf~~k~mks~~~~V~id~~lN~~iW~~~~tsl~akGIrnvP~rIRVr~sRk~nededs~~KlytlVt 121 (141)
|++|.+|++|+....+.+...|.+-..-|..| .+. ..-.+.-||.+| -|||+|.
T Consensus 2 PkqI~dIK~FL~~arrkDaksv~~~kkk~~~I---------Kkn--~~~tKFKvRcsr----------yLYTLvv 55 (89)
T 4a18_P 2 PKEITDIKKFMKLWQNNKDTPATAGAKKVVYV---------KTN--KRITKFKLRGKK----------YLYTFKT 55 (89)
T ss_dssp CEEESSHHHHHHHHHC----------CCEEEE---------EEC--SSCEEEEEECSS----------CEEEEEE
T ss_pred ChhHHHHHHHHHHHHccCCceeeeccccceeE---------Eec--CCceEEEEEecC----------ceEEEEe
Confidence 56788899999998888655553322111111 121 123566677777 4888875
No 11
>3ci0_I Pseudopilin GSPI; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: d.24.1.7
Probab=24.25 E-value=89 Score=20.47 Aligned_cols=49 Identities=16% Similarity=0.363 Sum_probs=27.6
Q ss_pred EecCCChhhhhhhhccccccccccCCeeEEEEEeeccCCCCCCCCceeEEEEEEe
Q psy873 70 CTVDLSCPIWFWWGTSLINMDIRSVPFRIRVRLSRRRNDDEDSPHKLYTLVTWVP 124 (141)
Q Consensus 70 id~~lN~~iW~~~~tsl~akGIrnvP~rIRVr~sRk~nededs~~KlytlVt~Vp 124 (141)
-++.....-| .|+....+-+..+ =+||.|.+.. ++++...++++.+||.
T Consensus 40 g~~~~~g~~w-~w~~~v~~T~~~~-~rrv~v~V~~----~~~~~~~l~~l~t~v~ 88 (89)
T 3ci0_I 40 GESDMAGSRW-YWRTTPLSTGNAL-LQAVDIEVSL----HEDFSSVIQSRRAWFS 88 (89)
T ss_dssp EEEEETTEEE-EEEEEEECCSCCC--EEEEEEEES----STTCCSEEEEEEEEEC
T ss_pred ceEEeCCeeE-EEEEEEEECCCCC-EEEEEEEEec----CCCCCCceEEEEEEec
Confidence 3444555556 4454444443333 3555666632 3455678999999984
No 12
>1r6f_A Virulence-associated V antigen; coiled-coil, protein binding; 2.17A {Yersinia pestis} SCOP: e.46.1.1
Probab=22.05 E-value=39 Score=28.63 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=18.6
Q ss_pred ChHHHHHHHHHHHHHHhcCC
Q psy873 45 AYPSQISMMTKESSKYISSM 64 (141)
Q Consensus 45 rap~Aik~irkf~~k~mks~ 64 (141)
||..||..|.+|+||+++.+
T Consensus 275 rYNaaIEAlNrFIQKYdSIm 294 (310)
T 1r6f_A 275 RFNSAIEALNRFIQKYDSVM 294 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999875
Done!