RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy873
         (141 letters)



>d1vqox1 d.29.1.1 (X:7-88) Ribosomal protein L31e {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 82

 Score = 38.5 bits (90), Expect = 2e-05
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 91  IRSVPFRIRVRLSRRRNDDED 111
             + P +IRVR +R   + E 
Sbjct: 57  RANTPSKIRVRAARFEEEGEA 77


>d3ci0i1 d.24.1.7 (I:31-114) Pseudopilin GspI {Escherichia coli
           [TaxId: 562]}
          Length = 84

 Score = 24.3 bits (53), Expect = 2.5
 Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 10/47 (21%)

Query: 79  WFWW--GTSLINMDIRSVPFRIRVRLSRRRNDDEDSPHKLYTLVTWV 123
           W+W     S  N  +++V   I V         ED    + +   W 
Sbjct: 44  WYWRTTPLSTGNALLQAV--DIEVS------LHEDFSSVIQSRRAWF 82


>d1v9va1 a.29.10.1 (A:8-108) Microtubule-associated
          serine/threonine-protein kinase 3, MAST3 (KIAA0561)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 101

 Score = 23.9 bits (52), Expect = 5.7
 Identities = 6/24 (25%), Positives = 12/24 (50%)

Query: 7  LENSQKLQAVLPSVKDKSKPSAAT 30
          LE  +KL+ +L    ++S     +
Sbjct: 60 LEMQEKLERLLQDAHERSDSEEVS 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.130    0.390 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 503,435
Number of extensions: 20142
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 3
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.4 bits)