Query psy8730
Match_columns 287
No_of_seqs 155 out of 721
Neff 4.3
Searched_HMMs 13730
Date Fri Aug 16 17:46:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8730.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8730hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lnga_ d.201.1.1 (A:) SRP19 { 22.7 7.2 0.00053 28.2 -0.4 25 242-266 5-29 (87)
2 d1kvva_ d.201.1.1 (A:) SRP19 { 19.9 8.2 0.0006 28.7 -0.6 24 242-265 8-31 (104)
3 d1jida_ d.201.1.1 (A:) SRP19 { 18.3 11 0.00078 28.5 -0.3 24 242-265 16-39 (114)
4 d1nekd_ f.21.2.2 (D:) Succinat 10.8 2E+02 0.015 20.3 5.3 43 224-274 15-57 (113)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 9.5 2E+02 0.014 17.4 4.3 26 221-246 12-37 (37)
6 d1tifa_ d.15.8.1 (A:) Translat 8.6 77 0.0056 21.9 1.9 17 248-264 15-34 (76)
7 d2r6gf2 f.58.1.1 (F:261-504) M 8.4 4.1E+02 0.03 20.2 7.7 37 116-152 30-66 (244)
8 d2npta1 d.15.2.2 (A:4-108) Mit 8.3 42 0.0031 25.0 0.4 11 250-260 60-70 (105)
9 d1iwga6 d.225.1.1 (A:725-812) 7.4 74 0.0054 21.2 1.4 19 244-262 62-80 (88)
10 d2pila_ d.24.1.1 (A:) Pilin Gc 6.5 1.2E+02 0.0086 20.9 2.2 20 116-135 4-24 (158)
No 1
>d1lnga_ d.201.1.1 (A:) SRP19 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=22.71 E-value=7.2 Score=28.19 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=21.7
Q ss_pred HhhhcceEecCCCCccchhHHHhhh
Q psy8730 242 YLYFNAKITDGEGEEIPLNEAIHHF 266 (287)
Q Consensus 242 ~~yfN~~iT~~~g~ev~~~ea~~~f 266 (287)
=.|||.+.|-+||-.||-..|+.|-
T Consensus 5 P~Y~Ds~~sr~eGRRv~k~~aV~~P 29 (87)
T d1lnga_ 5 PSYIDKKKSRREGRKVPEELAIEKP 29 (87)
T ss_dssp GGGTBTTSCTTTTCCSCTTTCBSSC
T ss_pred chhhcCCCChhhcCccCHHHHccCC
Confidence 3699999999999999998887653
No 2
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=19.93 E-value=8.2 Score=28.74 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=20.9
Q ss_pred HhhhcceEecCCCCccchhHHHhh
Q psy8730 242 YLYFNAKITDGEGEEIPLNEAIHH 265 (287)
Q Consensus 242 ~~yfN~~iT~~~g~ev~~~ea~~~ 265 (287)
=.|||.+.|-+||-.||-..|+.|
T Consensus 8 P~Y~Ds~~sr~eGRRv~k~~aV~~ 31 (104)
T d1kvva_ 8 TVNLDSKKSRAEGRRIPRRFAVPN 31 (104)
T ss_dssp TTTTCTTSCTTTCCCSCTTTCCSS
T ss_pred chhhcCCCChhhcCccCHHHhcCC
Confidence 369999999999999998888765
No 3
>d1jida_ d.201.1.1 (A:) SRP19 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.26 E-value=11 Score=28.52 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=20.6
Q ss_pred HhhhcceEecCCCCccchhHHHhh
Q psy8730 242 YLYFNAKITDGEGEEIPLNEAIHH 265 (287)
Q Consensus 242 ~~yfN~~iT~~~g~ev~~~ea~~~ 265 (287)
=.|||.+.|-+||-.||-..|+.|
T Consensus 16 P~Y~Ds~~tr~eGRRv~k~~aV~~ 39 (114)
T d1jida_ 16 PAYLNNKKTIAEGRRIPISKAVEN 39 (114)
T ss_dssp GGGGBTTSCTTTTCCSCTTTCBSS
T ss_pred CccccCCCChhhcCccCHHHhccC
Confidence 369999999999999998877653
No 4
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=10.84 E-value=2e+02 Score=20.26 Aligned_cols=43 Identities=14% Similarity=0.036 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcceEecCCCCccchhHHHhhhhcchhhhh
Q psy8730 224 RCLTIGACALLYSSLWGSYLYFNAKITDGEGEEIPLNEAIHHFFKSPWWVD 274 (287)
Q Consensus 224 R~~~l~~a~l~y~~l~~~~~yfN~~iT~~~g~ev~~~ea~~~f~~Sp~W~d 274 (287)
..-|++...++...+|--+.+.+ .++.+ +|+++.||++|++.=
T Consensus 15 ~~qRvSAv~l~~l~~~~~~~~~~-----~~~~~---y~~~~~~~~~~~~~i 57 (113)
T d1nekd_ 15 ILVRATAIVLTLYIIYMVGFFAT-----SGELT---YEVWIGFFASAFTKV 57 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-----TSSCC---HHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----cCCCC---HHHHHHHHhChHHHH
Confidence 44556666677667775544332 23333 789999999998753
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.49 E-value=2e+02 Score=17.37 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=19.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhc
Q psy8730 221 FLRRCLTIGACALLYSSLWGSYLYFN 246 (287)
Q Consensus 221 ~~~R~~~l~~a~l~y~~l~~~~~yfN 246 (287)
+-+-.+.+|+.....++.+-|.-|||
T Consensus 12 LNrtsLy~GlLlifvl~vLFssYfFN 37 (37)
T d2axtl1 12 LNRTSLYLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhcC
Confidence 55667778888877787777777777
No 6
>d1tifa_ d.15.8.1 (A:) Translation initiation factor IF3, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=8.57 E-value=77 Score=21.93 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=13.9
Q ss_pred eEecCCCCc---cchhHHHh
Q psy8730 248 KITDGEGEE---IPLNEAIH 264 (287)
Q Consensus 248 ~iT~~~g~e---v~~~ea~~ 264 (287)
.+.|+||++ ++++||++
T Consensus 15 rlI~~~G~~lGv~~~~eAl~ 34 (76)
T d1tifa_ 15 RLIDQNGDQLGIKSKQEALE 34 (76)
T ss_dssp EEECTTSCEEEEEEHHHHHH
T ss_pred EEECCCCcEeCeecHHHHHH
Confidence 467889984 89999986
No 7
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=8.37 E-value=4.1e+02 Score=20.19 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhhcCCcccCCCChhhHHHHHHHH
Q psy8730 116 GMTVVAYLWSTVVSMAIPEEDIGGLPWKYLHFLLPIA 152 (287)
Q Consensus 116 ~q~~vg~~fG~l~~~Aip~~~~~g~~~~~~~~~ipla 152 (287)
..+.++..+|++....+.....+|...-...+.+|..
T Consensus 30 ~~~~~~~~~~~~lA~~l~~~~~~~~~~~~~~~~~p~~ 66 (244)
T d2r6gf2 30 ITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYA 66 (244)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSTTHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHH
Confidence 4556666788887777776655665555555555654
No 8
>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.31 E-value=42 Score=25.02 Aligned_cols=11 Identities=27% Similarity=0.679 Sum_probs=9.9
Q ss_pred ecCCCCccchh
Q psy8730 250 TDGEGEEIPLN 260 (287)
Q Consensus 250 T~~~g~ev~~~ 260 (287)
.||||+.|+|+
T Consensus 60 EDEdGDRITVR 70 (105)
T d2npta1 60 EDEDGDRITVR 70 (105)
T ss_dssp ECTTSCEEEEC
T ss_pred ccccCCEeEEc
Confidence 59999999997
No 9
>d1iwga6 d.225.1.1 (A:725-812) Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains {Escherichia coli [TaxId: 562]}
Probab=7.42 E-value=74 Score=21.23 Aligned_cols=19 Identities=11% Similarity=0.247 Sum_probs=15.2
Q ss_pred hhcceEecCCCCccchhHH
Q psy8730 244 YFNAKITDGEGEEIPLNEA 262 (287)
Q Consensus 244 yfN~~iT~~~g~ev~~~ea 262 (287)
.-|-.|+..+|..||+++-
T Consensus 62 L~~l~i~~~~G~~vpLs~v 80 (88)
T d1iwga6 62 IGDWYVRAADGQMVPFSAF 80 (88)
T ss_dssp GTTCEECCTTSCCEEGGGT
T ss_pred HHhcccCCCCCCEEEhhHE
Confidence 3477888899999999874
No 10
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=6.54 E-value=1.2e+02 Score=20.86 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=15.7
Q ss_pred HHHHHHH-HHHHHHHhhcCCc
Q psy8730 116 GMTVVAY-LWSTVVSMAIPEE 135 (287)
Q Consensus 116 ~q~~vg~-~fG~l~~~Aip~~ 135 (287)
.|+||=+ .+|+|+.+|+|..
T Consensus 4 IELlVViaIIgILaaia~P~~ 24 (158)
T d2pila_ 4 IELMIVIAIVGILAAVALPAY 24 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 5665555 6899999999987
Done!