BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8733
(621 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E77|A Chain A, Human Phosphoserine Aminotransferase In Complex With Plp
pdb|3E77|B Chain B, Human Phosphoserine Aminotransferase In Complex With Plp
pdb|3E77|C Chain C, Human Phosphoserine Aminotransferase In Complex With Plp
Length = 377
Score = 302 bits (774), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 162/371 (43%), Positives = 210/371 (56%), Gaps = 85/371 (22%)
Query: 62 LPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQ 121
LP VL E+++ LLDY+ GISV+EMSHRS+D+ KI N+T+ +RELL VP+
Sbjct: 24 LPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPD-------- 75
Query: 122 GGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIG-RTGKADYVVTGS 180
NYK++FLQGGG G F+AV +NLIG + G+
Sbjct: 76 -----------------------NYKVIFLQGGGCGQFSAVPLNLIGLKAGR-------- 104
Query: 181 WSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSXXXX 240
C + V G+WS
Sbjct: 105 ---------------------------------------------CADYVVTGAWSAKAA 119
Query: 241 XXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNYIPDSQGIP 300
+G +N+V PK+ Y IPD STWN +P+ASY+YYC NETV GVEF++IPD +G
Sbjct: 120 EEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAV 179
Query: 301 LVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKI 360
LV DMSSNFLS+ DVSKFGVI AGAQKN+G AG+TVVIVR+DLL +AL P+V +K+
Sbjct: 180 LVCDMSSNFLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKV 239
Query: 361 NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECP 420
A N+S+YNTPP F ++V+ V WIK GG A ME+ S KS +Y+ IDNS FY CP
Sbjct: 240 QAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCP 299
Query: 421 VQAGCRSRMNV 431
V+ RS+MN+
Sbjct: 300 VEPQNRSKMNI 310
Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 114/178 (64%), Gaps = 17/178 (9%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
FGVI AGAQKN+G AG+TVVIVR+DLL +AL P+V +K+ A N+S+YNTPP F ++V
Sbjct: 198 FGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYV 257
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQ------AGFP------ 556
+ V WIK GG A ME+ S KS +Y+ IDNS FY CPV+ P
Sbjct: 258 MGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNA 317
Query: 557 -----LDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609
L++ FL +A NM+ LKGHR VGGIRAS+YNA+T+++ L FMK+F H
Sbjct: 318 KGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEMH 375
>pdb|1BJO|A Chain A, The Structure Of Phosphoserine Aminotransferase From E.
Coli In Complex With Alpha-Methyl-L-Glutamate
Length = 360
Score = 232 bits (591), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 190/381 (49%), Gaps = 85/381 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
+ NF +GPA LP EVL++ ++ L D+ G SVME+SHR ++ ++ + + R+LLNV
Sbjct: 2 IFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNV 61
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P+ NYK+LF GGG G FAAV +N++G
Sbjct: 62 PS-------------------------------NYKVLFCHGGGRGQFAAVPLNILGDKT 90
Query: 172 KADYVVTGSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
ADYV G W+ Y N+ KV TV
Sbjct: 91 TADYVDAGYWAASAIKEAKKYCTPNVFDAKV---------------------------TV 123
Query: 232 DGSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
DG + V P W A+Y++YC NET+DG+ +
Sbjct: 124 DG---------------LRAVKP----------MREWQLSDNAAYMHYCPNETIDGIAID 158
Query: 292 YIPD-SQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALP 350
PD + + +D SS LSR DVS++GVI AGAQKNIGPAG+T+VIVREDLL A
Sbjct: 159 ETPDFGADVVVAADFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANI 218
Query: 351 ITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410
P++ + I DN S++NTPPTF ++ VF W+K GG+A+M++ + QK+ LLY I
Sbjct: 219 ACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVI 278
Query: 411 DNSDKFYECPVQAGCRSRMNV 431
DNSD FY V RSRMNV
Sbjct: 279 DNSD-FYRNDVAKRNRSRMNV 298
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/175 (49%), Positives = 113/175 (64%), Gaps = 14/175 (8%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
+GVI AGAQKNIGPAG+T+VIVREDLL A P++ + I DN S++NTPPTF ++
Sbjct: 187 YGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYL 246
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE------------CPVQ-AGF 555
VF W+K GG+A+M++ + QK+ LLY IDNSD FY P Q A
Sbjct: 247 SGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSD-FYRNDVAKRNRSRMNVPFQLADS 305
Query: 556 PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKHS 610
LD+LFL+E+ A + LKGHR+VGG+RASIYNA+ ++ L FM EF +H
Sbjct: 306 ALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRHG 360
>pdb|3QM2|A Chain A, 2.25 Angstrom Crystal Structure Of Phosphoserine
Aminotransferase (Serc) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium
pdb|3QM2|B Chain B, 2.25 Angstrom Crystal Structure Of Phosphoserine
Aminotransferase (Serc) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium
Length = 386
Score = 231 bits (589), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 189/387 (48%), Gaps = 85/387 (21%)
Query: 46 SSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAAL 105
S+A V NF +GPA LP EVL+ ++ L D+ G SVME+SHR ++ ++ + +
Sbjct: 22 SNAMAQVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDF 81
Query: 106 RELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMN 165
R+LLN+P+ NYK+LF GGG G FA V +N
Sbjct: 82 RDLLNIPS-------------------------------NYKVLFCHGGGRGQFAGVPLN 110
Query: 166 LIGRTGKADYVVTGSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYY 225
L+G ADYV G W+ Y ++ K+
Sbjct: 111 LLGDKTTADYVDAGYWAASAIKEAKKYCAPQIIDAKI----------------------- 147
Query: 226 CDNETVDGSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285
TVDG ++ W A+YL+YC NET+
Sbjct: 148 ----TVDGK-------------------------RAVKPMREWQLSDNAAYLHYCPNETI 178
Query: 286 DGVEFNYIPD-SQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDL 344
DG+ + PD + + +D SS LS DVS++GVI AGAQKNIGPAG+T+VIVREDL
Sbjct: 179 DGIAIDETPDFGPEVVVTADFSSTILSAPLDVSRYGVIYAGAQKNIGPAGLTLVIVREDL 238
Query: 345 LEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSV 404
L A P++ + + DN+S++NTPPTF ++ VF W+K QGG+A M + + QK+
Sbjct: 239 LGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAE 298
Query: 405 LLYQEIDNSDKFYECPVQAGCRSRMNV 431
LLY IDNSD FY V RSRMNV
Sbjct: 299 LLYGVIDNSD-FYRNDVAQANRSRMNV 324
Score = 155 bits (392), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 14/174 (8%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
+GVI AGAQKNIGPAG+T+VIVREDLL A P++ + + DN+S++NTPPTF ++
Sbjct: 213 YGVIYAGAQKNIGPAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYL 272
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE------------CPVQ-AGF 555
VF W+K QGG+A M + + QK+ LLY IDNSD FY P Q A
Sbjct: 273 SGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSD-FYRNDVAQANRSRMNVPFQLADN 331
Query: 556 PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609
LD++FL+E+ A + LKGHR+VGG+RASIYNA+ ++ L FM +F +H
Sbjct: 332 TLDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERRH 385
>pdb|3QBO|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From
Yersinia Pestis Co92
pdb|3QBO|B Chain B, Crystal Structure Of Phosphoserine Aminotransferase From
Yersinia Pestis Co92
Length = 364
Score = 231 bits (588), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 142/386 (36%), Positives = 189/386 (48%), Gaps = 84/386 (21%)
Query: 46 SSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAAL 105
S+A V NF AGPA LP EVL ++ L D+ G SVME+SHRS ++ ++ +++ L
Sbjct: 1 SNAMTQVYNFSAGPAMLPVEVLRRAQQELRDWHGLGTSVMEVSHRSKEFMQVAEESEKDL 60
Query: 106 RELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMN 165
R+LLNVP NYK+LF GG FAAV +N
Sbjct: 61 RDLLNVPA-------------------------------NYKVLFCHGGARAQFAAVPLN 89
Query: 166 LIGRTGKADYVVTGSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYY 225
L+G ADYV G W+ I + KY
Sbjct: 90 LLGDRNSADYVDGGYWAHS-------------AIKEAQKY-------------------- 116
Query: 226 CDNETVDGSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285
C +D V + I W A+Y++YC NET+
Sbjct: 117 CTPNVID-------------------VTTHDNGLTGIQPMKQWKLSDNAAYVHYCPNETI 157
Query: 286 DGVEFNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLL 345
DG+ + PD +V+D SS+ LSR DVS++GVI AGAQKNIGPAG+T+VIVREDLL
Sbjct: 158 DGIAIDEQPDFGNKVVVADFSSSILSRPIDVSRYGVIYAGAQKNIGPAGLTLVIVREDLL 217
Query: 346 EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVL 405
A P++ +KI ADN+S++NTPPTF ++ VF W+K QGGL +ME+ + K+ L
Sbjct: 218 GKAHTALPSILDYKILADNDSMFNTPPTFAWYLSGLVFKWLKEQGGLGEMEKRNQAKAEL 277
Query: 406 LYQEIDNSDKFYECPVQAGCRSRMNV 431
LY ID + FY V RS MNV
Sbjct: 278 LYGAIDRT-GFYRNDVAITNRSWMNV 302
Score = 162 bits (410), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 112/174 (64%), Gaps = 14/174 (8%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
+GVI AGAQKNIGPAG+T+VIVREDLL A P++ +KI ADN+S++NTPPTF ++
Sbjct: 191 YGVIYAGAQKNIGPAGLTLVIVREDLLGKAHTALPSILDYKILADNDSMFNTPPTFAWYL 250
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE------------CPVQ-AGF 555
VF W+K QGGL +ME+ + K+ LLY ID + FY P Q A
Sbjct: 251 SGLVFKWLKEQGGLGEMEKRNQAKAELLYGAIDRT-GFYRNDVAITNRSWMNVPFQMADA 309
Query: 556 PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609
LD+LFL EA+A + LKGHR+ GG+RASIYNA+ ++ L FM +F +H
Sbjct: 310 SLDKLFLSEAEAQGLQALKGHRVAGGMRASIYNAMPIEGVKALTDFMADFERRH 363
>pdb|1BJN|A Chain A, Structure Of Phosphoserine Aminotransferase From
Escherichia Coli
pdb|1BJN|B Chain B, Structure Of Phosphoserine Aminotransferase From
Escherichia Coli
pdb|1BJO|B Chain B, The Structure Of Phosphoserine Aminotransferase From E.
Coli In Complex With Alpha-Methyl-L-Glutamate
Length = 360
Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/381 (36%), Positives = 189/381 (49%), Gaps = 85/381 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
+ NF +GPA LP EVL++ ++ L D+ G SVME+SHR ++ ++ + + R+LLNV
Sbjct: 2 IFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNV 61
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P+ NYK+LF GGG G FAAV +N++G
Sbjct: 62 PS-------------------------------NYKVLFCHGGGRGQFAAVPLNILGDKT 90
Query: 172 KADYVVTGSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
ADYV G W+ Y N+ KV TV
Sbjct: 91 TADYVDAGYWAASAIKEAKKYCTPNVFDAKV---------------------------TV 123
Query: 232 DGSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
DG + V P W A+Y++YC NET+DG+ +
Sbjct: 124 DG---------------LRAVKP----------MREWQLSDNAAYMHYCPNETIDGIAID 158
Query: 292 YIPD-SQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALP 350
PD + + +D SS LSR DVS++GVI AGAQ NIGPAG+T+VIVREDLL A
Sbjct: 159 ETPDFGADVVVAADFSSTILSRPIDVSRYGVIYAGAQXNIGPAGLTIVIVREDLLGKANI 218
Query: 351 ITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410
P++ + I DN S++NTPPTF ++ VF W+K GG+A+M++ + QK+ LLY I
Sbjct: 219 ACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVI 278
Query: 411 DNSDKFYECPVQAGCRSRMNV 431
DNSD FY V RSRMNV
Sbjct: 279 DNSD-FYRNDVAKRNRSRMNV 298
Score = 155 bits (391), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 112/175 (64%), Gaps = 14/175 (8%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
+GVI AGAQ NIGPAG+T+VIVREDLL A P++ + I DN S++NTPPTF ++
Sbjct: 187 YGVIYAGAQXNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYL 246
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE------------CPVQ-AGF 555
VF W+K GG+A+M++ + QK+ LLY IDNSD FY P Q A
Sbjct: 247 SGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSD-FYRNDVAKRNRSRMNVPFQLADS 305
Query: 556 PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKHS 610
LD+LFL+E+ A + LKGHR+VGG+RASIYNA+ ++ L FM EF +H
Sbjct: 306 ALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRHG 360
>pdb|1BT4|A Chain A, Phosphoserine Aminotransferase From Bacillus Circulans
Subsp. Alkalophilus
pdb|1W3U|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From
Bacillus Circulans Var. Alkalophilus
pdb|2C0R|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From
Bacillus Circulans Var. Alkalophilus At Ph 8.5
pdb|2C0R|B Chain B, Crystal Structure Of Phosphoserine Aminotransferase From
Bacillus Circulans Var. Alkalophilus At Ph 8.5
Length = 362
Score = 229 bits (583), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 130/380 (34%), Positives = 191/380 (50%), Gaps = 86/380 (22%)
Query: 54 NFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPN 113
NF AGPA LP EVLE + +DY+ TG+S+MEMSHR A Y ++N+ QA L LL P
Sbjct: 7 NFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPT 66
Query: 114 NYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKA 173
YK+LF+QGG + FA + MN FL+ G T A
Sbjct: 67 GYKVLFIQGGASTQFAMIPMN---------------FLKEGQT----------------A 95
Query: 174 DYVVTGSWSXXXXXXXXXYGKVNLVI-PKVSKYVSIPDQSTWNRDPEASYLYYCDNETVD 232
+YV+TGSW+ G ++ + S Y+++P A+YL+ NET++
Sbjct: 96 NYVMTGSWASKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQDNAAYLHLTSNETIE 155
Query: 233 GSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY 292
G +++ + PD +
Sbjct: 156 G-----------------------AQFKAFPDTGS------------------------- 167
Query: 293 IPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPIT 352
+PL+ DMSS+ LSR FD+++FG++ AGAQKN+GP+G+TVVIVREDL+ +
Sbjct: 168 ------VPLIGDMSSDILSRPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHL 221
Query: 353 PTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412
PT+ + NNS+YNTPP+F ++++ V WI+ +GGL ++Q + +K+ L+Y ID
Sbjct: 222 PTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQ 281
Query: 413 SDKFYECPVQAGCRSRMNVT 432
S FY V RS MN+T
Sbjct: 282 SGGFYRGCVDVDSRSDMNIT 301
Score = 145 bits (366), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 106/172 (61%), Gaps = 13/172 (7%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
FG++ AGAQKN+GP+G+TVVIVREDL+ + PT+ + NNS+YNTPP+F +++
Sbjct: 188 FGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYM 247
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQ-------------AGF 555
+ V WI+ +GGL ++Q + +K+ L+Y ID S FY V A
Sbjct: 248 VNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASE 307
Query: 556 PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRH 607
L++ F+K ++ + LKGHR VGG+RASIYNA+ + LV+FM+ F+
Sbjct: 308 ELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKR 359
>pdb|2BIE|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure H)
pdb|2BIE|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure H)
pdb|2BIG|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure I)
pdb|2BIG|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure I)
Length = 361
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 130/382 (34%), Positives = 195/382 (51%), Gaps = 86/382 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
V NF AGP+ LP+ LE ++ LL++ T +SVME+SHRS Y +++ Q LRELL +
Sbjct: 5 VFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQI 64
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
PN+Y+ILFLQGG + F + MNL++ GT IG
Sbjct: 65 PNDYQILFLQGGASLQFTMLPMNLLTK----------------GT----------IG--- 95
Query: 172 KADYVVTGSWSXXXXXXXXXYGKVNLVIP-KVSKYVSIPDQSTWNRDPEASYLYYCDNET 230
+YV+TGSWS G+ ++ K + Y SIPD S + + +YL+ N T
Sbjct: 96 --NYVLTGSWSEKALKEAKLLGETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNT 153
Query: 231 VDGSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290
+ G ++Y + P E
Sbjct: 154 IYG-----------------------TQYQNFP-------------------------EI 165
Query: 291 NYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALP 350
N+ PL++DMSS+ LSR V++FG+I AGAQKN+GP+G+TVVIV++DLL +
Sbjct: 166 NH------APLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVE 219
Query: 351 ITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410
PT+ + + ++S+YNTPPTF +++++ V WIK GG + + + +K+ ++Y I
Sbjct: 220 QVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTI 279
Query: 411 DNSDKFYECPVQAGCRSRMNVT 432
D S+ FY + G RS MNVT
Sbjct: 280 DESNGFYVGHAEKGSRSLMNVT 301
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 104/172 (60%), Gaps = 13/172 (7%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
FG+I AGAQKN+GP+G+TVVIV++DLL + PT+ + + ++S+YNTPPTF +++
Sbjct: 188 FGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYM 247
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGF------------- 555
++ V WIK GG + + + +K+ ++Y ID S+ FY + G
Sbjct: 248 LRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNE 307
Query: 556 PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRH 607
L++ FL +AK + L GHR VGG RASIYNA+ +D + L + M +F+
Sbjct: 308 ELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKE 359
>pdb|1W23|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From
Bacillus Alcalophilus
pdb|1W23|B Chain B, Crystal Structure Of Phosphoserine Aminotransferase From
Bacillus Alcalophilus
pdb|2BHX|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure A)
pdb|2BHX|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure A)
pdb|2BI1|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure B)
pdb|2BI1|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure B)
pdb|2BI2|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure C)
pdb|2BI2|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure C)
pdb|2BI3|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure D)
pdb|2BI3|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure D)
pdb|2BI5|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure E)
pdb|2BI5|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure E)
pdb|2BI9|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure F)
pdb|2BI9|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure F)
pdb|2BIA|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure G)
pdb|2BIA|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure G)
Length = 360
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 130/382 (34%), Positives = 195/382 (51%), Gaps = 86/382 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
V NF AGP+ LP+ LE ++ LL++ T +SVME+SHRS Y +++ Q LRELL +
Sbjct: 4 VFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQI 63
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
PN+Y+ILFLQGG + F + MNL++ GT IG
Sbjct: 64 PNDYQILFLQGGASLQFTMLPMNLLTK----------------GT----------IG--- 94
Query: 172 KADYVVTGSWSXXXXXXXXXYGKVNLVIP-KVSKYVSIPDQSTWNRDPEASYLYYCDNET 230
+YV+TGSWS G+ ++ K + Y SIPD S + + +YL+ N T
Sbjct: 95 --NYVLTGSWSEKALKEAKLLGETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNT 152
Query: 231 VDGSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290
+ G ++Y + P E
Sbjct: 153 IYG-----------------------TQYQNFP-------------------------EI 164
Query: 291 NYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALP 350
N+ PL++DMSS+ LSR V++FG+I AGAQKN+GP+G+TVVIV++DLL +
Sbjct: 165 NH------APLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVE 218
Query: 351 ITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410
PT+ + + ++S+YNTPPTF +++++ V WIK GG + + + +K+ ++Y I
Sbjct: 219 QVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTI 278
Query: 411 DNSDKFYECPVQAGCRSRMNVT 432
D S+ FY + G RS MNVT
Sbjct: 279 DESNGFYVGHAEKGSRSLMNVT 300
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 104/172 (60%), Gaps = 13/172 (7%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
FG+I AGAQKN+GP+G+TVVIV++DLL + PT+ + + ++S+YNTPPTF +++
Sbjct: 187 FGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYM 246
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGF------------- 555
++ V WIK GG + + + +K+ ++Y ID S+ FY + G
Sbjct: 247 LRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNE 306
Query: 556 PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRH 607
L++ FL +AK + L GHR VGG RASIYNA+ +D + L + M +F+
Sbjct: 307 ELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKE 358
>pdb|3M5U|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From
Campylobacter Jejuni
pdb|3M5U|B Chain B, Crystal Structure Of Phosphoserine Aminotransferase From
Campylobacter Jejuni
Length = 361
Score = 155 bits (391), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 107/387 (27%), Positives = 171/387 (44%), Gaps = 89/387 (22%)
Query: 47 SAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALR 106
S A INF AGP+ LP E+LE+ ++ L DY+ G S+ E+SHR+ + +++ Q +
Sbjct: 1 SNAXRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIXEISHRTKVFEEVHFGAQEKAK 60
Query: 107 ELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNL 166
+L + ++Y++LFLQGG + FA + NL
Sbjct: 61 KL-------------------------------YELNDDYEVLFLQGGASLQFAXIPXNL 89
Query: 167 IGRTGKADYVVTGSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYC 226
G +Y TG W+ G VN+ K V+ ++S ++ P +
Sbjct: 90 -ALNGVCEYANTGVWTKKAIKEAQILG-VNV------KTVASSEESNFDHIPRVEF---S 138
Query: 227 DNETVDGSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVD 286
DN A Y Y C N T+
Sbjct: 139 DN---------------------------------------------ADYAYICSNNTIY 153
Query: 287 GVEFNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLE 346
G ++ P ++ PL+ D SS+F SRK D S + G QKN G +G++ + +R+D LE
Sbjct: 154 GTQYQNYPKTK-TPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDXLE 212
Query: 347 YAL-PITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVL 405
+ P+ ++ +A+N S++NTPPTF ++ W+ QGGL K+ + + QK+
Sbjct: 213 RSKNKQIPSXLNYLTHAENQSLFNTPPTFAIYXFNLEXDWLLNQGGLDKVHEKNSQKATX 272
Query: 406 LYQEIDNSDKFYECPVQAGCRSRMNVT 432
LY+ ID S+ FY+ RS NV+
Sbjct: 273 LYECIDLSNGFYKGHADKKDRSLXNVS 299
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 105/180 (58%), Gaps = 19/180 (10%)
Query: 446 AFFFGVIIAGAQKNIGPAGITVVIVREDLLEYAL-PITPTVFHFKINADNNSVYNTPPTF 504
A F+G G QKN G +G++ + +R+D LE + P+ ++ +A+N S++NTPPTF
Sbjct: 186 ALFYG----GVQKNAGISGLSCIFIRKDXLERSKNKQIPSXLNYLTHAENQSLFNTPPTF 241
Query: 505 VVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECP-------------- 550
++ W+ QGGL K+ + + QK+ LY+ ID S+ FY+
Sbjct: 242 AIYXFNLEXDWLLNQGGLDKVHEKNSQKATXLYECIDLSNGFYKGHADKKDRSLXNVSFN 301
Query: 551 VQAGFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKHS 610
+ L+ LF+KEA+ I LKGHR++GGIRASIYNA+ +D+ L +F KEF+ K++
Sbjct: 302 IAKNKDLEPLFVKEAEEAGXIGLKGHRILGGIRASIYNALNLDQVKTLCEFXKEFQGKYA 361
>pdb|2FYF|A Chain A, Structure Of A Putative Phosphoserine Aminotransferase
From Mycobacterium Tuberculosis
pdb|2FYF|B Chain B, Structure Of A Putative Phosphoserine Aminotransferase
From Mycobacterium Tuberculosis
pdb|3VOM|A Chain A, Structure Of A Putative Phosphoserine Aminotransferase
From Mycobacterium Tuberculosis
pdb|3VOM|B Chain B, Structure Of A Putative Phosphoserine Aminotransferase
From Mycobacterium Tuberculosis
Length = 398
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 54 NFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPN 113
FG+GP+K+ E L+ + +T ++ SHR A + ++ L EL ++P+
Sbjct: 43 RFGSGPSKVRLEQLQTLT-------TTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPD 95
Query: 114 NYKILFLQGGGTGMFAAVAMNLI 136
Y+++ GG T + A A LI
Sbjct: 96 GYEVILGNGGATAFWDAAAFGLI 118
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 66/184 (35%), Gaps = 21/184 (11%)
Query: 261 SIPDQSTWNRDPEASYLYYCDNETVDGVEFNYI-PDSQGIPLVS-DMSSNFLSRKFDVSK 318
S P+ T DP + + NET GV P+ LV D +S D+++
Sbjct: 156 SAPEPQT---DPSVDVIAWAHNETSTGVAVAVRRPEGSDDALVVIDATSGAGGLPVDIAE 212
Query: 319 FGVIIAGAQKNIGP-AGITVVIVREDLLEYALPIT------PTVFHFKINADN---NSVY 368
QKN G+ + I+ L I P I +N N Y
Sbjct: 213 TDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTY 272
Query: 369 NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLY---QEIDNSDKFYECPVQAGC 425
NTP + ++ W+ GGL + + S LY QE + F P G
Sbjct: 273 NTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDP---GL 329
Query: 426 RSRM 429
RS++
Sbjct: 330 RSQV 333
>pdb|2DR1|A Chain A, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
pdb|2DR1|B Chain B, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
Length = 386
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
F AGP EVLE +K V SHRS +Y K++ DT LRE L V
Sbjct: 24 FTAGPVACFPEVLEIMK------------VQMFSHRSKEYRKVHMDTVERLREFLEVEKG 71
Query: 115 YKILFLQGGGTGMFAAVAMNLISSSMNV 142
++L + GTG+ A N +S V
Sbjct: 72 -EVLLVPSSGTGIMEASIRNGVSKGGKV 98
>pdb|3FFR|A Chain A, Crystal Structure Of A Phosphoserine Aminotransferase Serc
(chu_0995) From Cytophaga Hutchinsonii Atcc 33406 At
1.75 A Resolution
Length = 362
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVP 112
I F GP++L V + T LD E G+ +SHRS + ++ L+ LL +P
Sbjct: 6 IYFTPGPSELYPTVRQHXI-TALD-EKIGV----ISHRSKKFEEVYKTASDNLKTLLELP 59
Query: 113 NNYKILFLQGGGTGMFAAVAMNLI 136
+NY++LFL T ++ + N +
Sbjct: 60 SNYEVLFL-ASATEIWERIIQNCV 82
>pdb|3K2Q|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
Length = 420
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 19/102 (18%)
Query: 504 FVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID-NSDKFYE----CPVQAGFPL- 557
F++ V+ R WI GGLA + V+L+ EI N +KF E C G+ +
Sbjct: 185 FILEVMGRHAGWIAAAGGLAGQSEGE-PPHVILFPEIPFNREKFLERVDQCVRDYGYCVV 243
Query: 558 ---------DELFLKEAKAHNMIQLKGHRLVGGIRASIYNAI 590
D F+ +A A + GH +GG+ ++ N +
Sbjct: 244 VASEGAQYEDGRFVADAGAKDAF---GHTQLGGVAPALANMV 282
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 32/170 (18%)
Query: 295 DSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEY----ALP 350
+S+ + SD+ N + +F ++K VI GA G + I + D+LE
Sbjct: 18 ESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLE-KIEISQNDVLEVIEADVFS 76
Query: 351 ITPTVFHFKINADNNSVYNTPPTF-----------------------VVHVIQRVFAWIK 387
P + +I NN +Y P F +H +Q+V I+
Sbjct: 77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136
Query: 388 RQGGLAKMEQNSLQ----KSVLLYQEIDNSDKFYECPVQAGCRSRMNVTD 433
+ +E+NS +SV+L+ + + + C +N++D
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 186
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 38/156 (24%)
Query: 295 DSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEY----ALP 350
+S+ + SD+ N + +F ++K VI GA G + I + D+LE
Sbjct: 18 ESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLE-KIEISQNDVLEVIEADVFS 76
Query: 351 ITPTVFHFKINADNNSVYNTPPTF-----------------------VVHVIQRVFAWIK 387
P + +I NN +Y P F +H +Q+V I+
Sbjct: 77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136
Query: 388 RQGGLAKMEQNSLQ----KSVLLY------QEIDNS 413
+ +E+NS +SV+L+ QEI NS
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,979,988
Number of Sequences: 62578
Number of extensions: 749536
Number of successful extensions: 1730
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1653
Number of HSP's gapped (non-prelim): 52
length of query: 621
length of database: 14,973,337
effective HSP length: 105
effective length of query: 516
effective length of database: 8,402,647
effective search space: 4335765852
effective search space used: 4335765852
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)