Query psy8733
Match_columns 621
No_of_seqs 404 out of 2484
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 17:50:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2790|consensus 100.0 1.9E-90 4E-95 692.6 26.3 352 46-610 2-370 (370)
2 PRK12462 phosphoserine aminotr 100.0 6.9E-81 1.5E-85 665.2 35.0 359 51-610 4-364 (364)
3 COG1932 SerC Phosphoserine ami 100.0 4.1E-80 8.8E-85 642.0 30.2 347 50-610 4-365 (365)
4 PLN02452 phosphoserine transam 100.0 3.4E-74 7.5E-79 617.1 35.8 360 50-610 6-365 (365)
5 PRK05355 3-phosphoserine/phosp 100.0 2.8E-58 6E-63 493.8 36.1 358 51-610 3-360 (360)
6 TIGR01364 serC_1 phosphoserine 100.0 1.6E-56 3.5E-61 478.4 34.8 349 60-609 1-349 (349)
7 cd00611 PSAT_like Phosphoserin 100.0 5E-55 1.1E-59 467.2 34.8 354 53-606 1-354 (355)
8 COG0075 Serine-pyruvate aminot 100.0 4.1E-51 8.8E-56 435.7 30.5 345 52-611 6-366 (383)
9 TIGR01365 serC_2 phosphoserine 100.0 5.9E-51 1.3E-55 438.3 30.9 348 53-607 5-372 (374)
10 TIGR01366 serC_3 phosphoserine 100.0 4E-46 8.6E-51 399.9 31.7 342 53-608 5-360 (361)
11 PRK03080 phosphoserine aminotr 100.0 2.7E-45 5.9E-50 395.4 33.9 286 45-431 6-309 (378)
12 KOG2862|consensus 100.0 3E-44 6.5E-49 364.6 21.7 290 53-447 19-328 (385)
13 COG0520 csdA Selenocysteine ly 100.0 5E-39 1.1E-43 349.4 30.9 305 31-429 8-335 (405)
14 PLN02409 serine--glyoxylate am 100.0 6.9E-38 1.5E-42 340.2 31.1 284 50-431 8-309 (401)
15 PF00266 Aminotran_5: Aminotra 100.0 2E-37 4.3E-42 331.8 29.6 291 52-431 1-312 (371)
16 TIGR02326 transamin_PhnW 2-ami 100.0 4E-35 8.6E-40 312.9 31.2 281 51-429 3-297 (363)
17 PRK13479 2-aminoethylphosphona 100.0 3.3E-33 7.1E-38 298.5 31.1 347 51-610 5-365 (368)
18 TIGR03301 PhnW-AepZ 2-aminoeth 100.0 4.2E-31 9.1E-36 278.7 31.1 267 54-418 2-282 (355)
19 COG1104 NifS Cysteine sulfinat 100.0 2.6E-30 5.7E-35 274.8 30.3 287 51-432 2-298 (386)
20 PRK09295 bifunctional cysteine 100.0 4.5E-30 9.7E-35 278.7 32.4 283 50-419 23-326 (406)
21 PLN02855 Bifunctional selenocy 100.0 3.1E-30 6.7E-35 281.6 31.1 306 24-419 10-334 (424)
22 PRK10874 cysteine sulfinate de 100.0 1.8E-29 3.8E-34 273.2 31.9 282 50-418 19-320 (401)
23 TIGR03392 FeS_syn_CsdA cystein 100.0 7.9E-29 1.7E-33 267.9 31.6 282 50-418 16-317 (398)
24 PLN02651 cysteine desulfurase 100.0 1.7E-29 3.7E-34 270.3 25.0 285 52-430 1-297 (364)
25 PLN02724 Molybdenum cofactor s 100.0 8E-29 1.7E-33 290.7 29.9 296 45-414 29-360 (805)
26 cd06451 AGAT_like Alanine-glyo 100.0 4.3E-28 9.2E-33 257.5 28.5 266 53-418 1-282 (356)
27 TIGR03402 FeS_nifS cysteine de 100.0 2.3E-27 5.1E-32 254.6 31.1 272 52-420 1-282 (379)
28 TIGR01977 am_tr_V_EF2568 cyste 100.0 1.1E-26 2.4E-31 248.1 31.3 275 52-419 1-295 (376)
29 TIGR01979 sufS cysteine desulf 100.0 1.6E-26 3.4E-31 250.0 32.1 283 50-419 18-320 (403)
30 TIGR02006 IscS cysteine desulf 100.0 6.1E-26 1.3E-30 246.4 31.8 284 50-429 3-297 (402)
31 TIGR03403 nifS_epsilon cystein 100.0 2.8E-26 6E-31 246.8 28.7 281 52-429 1-293 (382)
32 TIGR01814 kynureninase kynuren 100.0 2E-26 4.3E-31 250.5 26.7 278 49-413 26-328 (406)
33 TIGR01976 am_tr_V_VC1184 cyste 99.9 1.3E-25 2.8E-30 242.1 31.6 279 51-420 18-320 (397)
34 PRK02948 cysteine desulfurase; 99.9 2E-25 4.4E-30 239.8 29.3 265 52-414 2-277 (381)
35 KOG1549|consensus 99.9 3.1E-26 6.7E-31 244.8 21.6 274 50-420 43-330 (428)
36 cd06453 SufS_like Cysteine des 99.9 5.2E-25 1.1E-29 235.3 31.2 280 52-419 1-300 (373)
37 PRK12462 phosphoserine aminotr 99.9 5E-27 1.1E-31 251.4 7.4 110 447-556 187-297 (364)
38 PRK14012 cysteine desulfurase; 99.9 3.4E-24 7.4E-29 232.7 28.4 276 50-418 3-289 (404)
39 TIGR03235 DNA_S_dndA cysteine 99.9 5E-24 1.1E-28 226.7 25.3 282 53-429 1-294 (353)
40 KOG2790|consensus 99.9 1.4E-25 2.9E-30 226.2 9.8 173 208-432 137-309 (370)
41 COG1932 SerC Phosphoserine ami 99.9 2.6E-21 5.7E-26 202.6 14.1 108 324-432 196-304 (365)
42 PRK09331 Sep-tRNA:Cys-tRNA syn 99.9 2.2E-19 4.8E-24 194.4 28.2 264 59-420 29-306 (387)
43 PLN02452 phosphoserine transam 99.8 1.8E-20 3.8E-25 201.9 7.3 106 447-552 189-294 (365)
44 PTZ00094 serine hydroxymethylt 99.8 1.9E-18 4.2E-23 191.1 21.9 276 50-418 34-326 (452)
45 cd06452 SepCysS Sep-tRNA:Cys-t 99.8 1.7E-17 3.7E-22 177.5 26.9 266 59-419 10-286 (361)
46 PRK13520 L-tyrosine decarboxyl 99.8 2.4E-17 5.2E-22 175.8 27.7 265 55-417 25-305 (371)
47 TIGR03812 tyr_de_CO2_Arch tyro 99.8 9.7E-17 2.1E-21 171.4 27.0 264 52-414 23-308 (373)
48 PRK02769 histidine decarboxyla 99.7 6E-17 1.3E-21 175.6 19.3 273 50-418 22-315 (380)
49 TIGR01788 Glu-decarb-GAD gluta 99.7 1.1E-15 2.5E-20 168.1 28.4 277 51-419 34-351 (431)
50 TIGR02539 SepCysS Sep-tRNA:Cys 99.7 1.2E-15 2.6E-20 164.3 28.0 139 272-418 145-291 (370)
51 PLN03226 serine hydroxymethylt 99.7 5.7E-15 1.2E-19 164.5 26.9 285 50-419 34-338 (475)
52 cd00378 SHMT Serine-glycine hy 99.7 2.6E-15 5.6E-20 162.6 23.3 267 50-417 19-301 (402)
53 PRK00011 glyA serine hydroxyme 99.7 3E-15 6.5E-20 163.2 23.5 268 50-417 25-305 (416)
54 cd00613 GDC-P Glycine cleavage 99.7 2.5E-14 5.4E-19 154.3 26.1 144 270-415 156-329 (398)
55 TIGR01437 selA_rel uncharacter 99.6 5.6E-14 1.2E-18 151.4 24.2 255 58-419 21-288 (363)
56 PRK00451 glycine dehydrogenase 99.6 7.8E-13 1.7E-17 145.8 27.6 144 270-417 201-375 (447)
57 cd06450 DOPA_deC_like DOPA dec 99.6 8.4E-14 1.8E-18 147.1 18.7 111 273-418 148-272 (345)
58 cd06454 KBL_like KBL_like; thi 99.6 6.3E-13 1.4E-17 140.3 24.1 129 272-414 131-274 (349)
59 PRK05937 8-amino-7-oxononanoat 99.6 4.4E-13 9.6E-18 144.4 22.7 127 272-411 142-282 (370)
60 PRK04366 glycine dehydrogenase 99.5 6.7E-12 1.5E-16 140.3 29.8 140 270-413 205-368 (481)
61 PRK13580 serine hydroxymethylt 99.5 1.1E-12 2.3E-17 145.5 22.8 132 270-417 216-361 (493)
62 PLN03032 serine decarboxylase; 99.5 4.4E-13 9.4E-18 145.1 19.2 269 51-417 24-317 (374)
63 PLN02414 glycine dehydrogenase 99.5 3E-12 6.6E-17 152.1 26.6 263 50-414 101-402 (993)
64 TIGR01365 serC_2 phosphoserine 99.5 2E-14 4.4E-19 155.4 7.0 97 448-544 175-283 (374)
65 TIGR01822 2am3keto_CoA 2-amino 99.5 2.4E-11 5.2E-16 131.1 28.6 128 273-413 170-312 (393)
66 PRK07179 hypothetical protein; 99.5 9.8E-12 2.1E-16 135.5 25.7 128 273-414 181-323 (407)
67 PRK13034 serine hydroxymethylt 99.5 2.4E-12 5.2E-17 141.3 20.5 131 273-418 168-309 (416)
68 TIGR01141 hisC histidinol-phos 99.4 7.7E-12 1.7E-16 132.7 21.8 131 270-417 139-284 (346)
69 cd00616 AHBA_syn 3-amino-5-hyd 99.4 1.1E-11 2.4E-16 131.2 21.9 140 270-420 103-258 (352)
70 TIGR00474 selA seryl-tRNA(sec) 99.4 2.1E-11 4.5E-16 135.2 23.1 211 45-349 77-309 (454)
71 cd00615 Orn_deC_like Ornithine 99.4 1.3E-12 2.9E-17 136.5 12.1 129 271-411 152-293 (294)
72 PRK05367 glycine dehydrogenase 99.4 3.2E-11 7E-16 143.7 24.1 230 91-417 116-376 (954)
73 TIGR00858 bioF 8-amino-7-oxono 99.4 2.3E-10 5E-15 121.0 26.9 128 272-414 145-289 (360)
74 COG3844 Kynureninase [Amino ac 99.4 3.2E-11 7E-16 125.1 18.8 293 27-414 7-326 (407)
75 PRK04311 selenocysteine syntha 99.4 5E-11 1.1E-15 132.6 21.2 210 45-349 82-314 (464)
76 TIGR01364 serC_1 phosphoserine 99.3 1.5E-12 3.4E-17 139.7 7.8 102 449-550 176-277 (349)
77 cd01494 AAT_I Aspartate aminot 99.3 1.6E-11 3.4E-16 114.8 13.3 72 270-341 89-170 (170)
78 PRK06225 aspartate aminotransf 99.3 6.2E-10 1.3E-14 120.1 27.1 131 270-415 154-299 (380)
79 cd00611 PSAT_like Phosphoserin 99.3 2.6E-12 5.6E-17 138.0 8.0 103 449-551 184-286 (355)
80 PLN02414 glycine dehydrogenase 99.3 3.1E-11 6.8E-16 143.6 17.0 136 272-412 665-824 (993)
81 PLN02271 serine hydroxymethylt 99.3 5.1E-11 1.1E-15 133.2 17.0 283 50-419 148-459 (586)
82 TIGR01825 gly_Cac_T_rel pyrido 99.3 1.6E-09 3.5E-14 116.5 28.0 128 272-414 162-305 (385)
83 PRK13392 5-aminolevulinate syn 99.3 8.4E-10 1.8E-14 120.5 26.0 129 271-414 176-320 (410)
84 PRK05958 8-amino-7-oxononanoat 99.3 1.7E-09 3.6E-14 115.8 27.6 128 273-414 168-311 (385)
85 cd00609 AAT_like Aspartate ami 99.3 2.2E-10 4.8E-15 119.8 20.3 131 270-414 129-279 (350)
86 TIGR03799 NOD_PanD_pyr putativ 99.3 5.8E-10 1.3E-14 125.8 24.8 145 273-420 263-426 (522)
87 PRK05355 3-phosphoserine/phosp 99.3 4.9E-12 1.1E-16 136.4 7.2 100 449-549 187-286 (360)
88 PRK02731 histidinol-phosphate 99.3 1E-09 2.3E-14 117.5 24.3 127 270-413 151-295 (367)
89 PRK08134 O-acetylhomoserine am 99.2 1.5E-10 3.2E-15 128.0 15.5 153 96-341 64-225 (433)
90 PRK06108 aspartate aminotransf 99.2 5.2E-09 1.1E-13 112.5 26.9 133 270-416 155-308 (382)
91 cd06502 TA_like Low-specificit 99.2 7.1E-10 1.5E-14 116.7 19.1 127 272-414 126-268 (338)
92 PLN02483 serine palmitoyltrans 99.2 1.2E-08 2.5E-13 114.6 29.4 128 275-414 241-389 (489)
93 PRK06939 2-amino-3-ketobutyrat 99.2 7.6E-09 1.6E-13 111.4 26.5 128 273-414 174-317 (397)
94 PRK11658 UDP-4-amino-4-deoxy-L 99.2 1.2E-09 2.6E-14 118.5 19.9 245 62-414 12-275 (379)
95 PRK07908 hypothetical protein; 99.2 9.6E-09 2.1E-13 109.6 26.4 125 271-413 137-276 (349)
96 PRK09105 putative aminotransfe 99.2 1.1E-08 2.4E-13 110.6 27.1 243 51-414 45-303 (370)
97 TIGR03588 PseC UDP-4-keto-6-de 99.2 8.1E-09 1.8E-13 111.6 25.2 243 62-417 8-282 (380)
98 TIGR01821 5aminolev_synth 5-am 99.1 2.3E-08 5E-13 108.8 27.0 127 273-414 177-319 (402)
99 PRK09064 5-aminolevulinate syn 99.1 2.4E-08 5.1E-13 108.8 26.9 129 272-414 177-320 (407)
100 PRK05764 aspartate aminotransf 99.1 2.5E-08 5.4E-13 107.8 26.1 133 270-416 161-314 (393)
101 PRK13393 5-aminolevulinate syn 99.1 5.1E-08 1.1E-12 106.4 28.2 128 272-414 176-319 (406)
102 PRK08248 O-acetylhomoserine am 99.1 1E-09 2.2E-14 121.2 14.2 145 270-416 146-316 (431)
103 PRK05957 aspartate aminotransf 99.1 3.7E-08 8.1E-13 106.9 25.5 131 270-415 157-308 (389)
104 PLN03026 histidinol-phosphate 99.1 2.6E-08 5.6E-13 108.0 23.7 126 271-414 173-311 (380)
105 PLN02721 threonine aldolase 99.1 1.3E-08 2.7E-13 107.9 20.7 76 272-348 136-228 (353)
106 PRK05367 glycine dehydrogenase 99.0 2.8E-08 6E-13 119.0 25.3 137 272-412 639-792 (954)
107 PRK08056 threonine-phosphate d 99.0 4.4E-08 9.5E-13 105.0 24.1 130 270-416 139-286 (356)
108 PRK07568 aspartate aminotransf 99.0 5.8E-08 1.3E-12 105.1 24.5 131 270-415 159-310 (397)
109 COG0076 GadB Glutamate decarbo 99.0 3.1E-08 6.8E-13 110.2 22.2 277 50-419 62-367 (460)
110 PRK08114 cystathionine beta-ly 99.0 6.2E-09 1.3E-13 113.7 16.3 125 270-415 144-282 (395)
111 COG1103 Archaea-specific pyrid 99.0 4.7E-08 1E-12 99.6 21.1 144 273-423 156-308 (382)
112 PLN02822 serine palmitoyltrans 99.0 3.1E-07 6.8E-12 103.0 30.1 130 272-417 243-391 (481)
113 PRK05387 histidinol-phosphate 99.0 9.9E-08 2.1E-12 101.6 24.8 128 273-414 144-284 (353)
114 PTZ00125 ornithine aminotransf 99.0 6.9E-08 1.5E-12 104.7 23.2 124 272-413 177-318 (400)
115 PRK07324 transaminase; Validat 99.0 1.3E-07 2.8E-12 102.3 24.9 131 270-414 150-296 (373)
116 PRK04870 histidinol-phosphate 99.0 6.4E-08 1.4E-12 103.5 21.9 242 59-416 37-290 (356)
117 PRK08064 cystathionine beta-ly 98.9 1.5E-08 3.2E-13 110.6 16.1 126 270-415 135-272 (390)
118 PRK05613 O-acetylhomoserine am 98.9 4.6E-08 9.9E-13 108.4 20.1 72 269-341 151-231 (437)
119 TIGR01366 serC_3 phosphoserine 98.9 1.2E-09 2.6E-14 117.9 7.0 96 449-544 176-281 (361)
120 PRK08133 O-succinylhomoserine 98.9 1.8E-08 3.9E-13 109.9 16.3 128 270-416 143-280 (390)
121 TIGR03540 DapC_direct LL-diami 98.9 2.4E-07 5.1E-12 100.1 24.8 130 270-413 161-310 (383)
122 PRK07309 aromatic amino acid a 98.9 3.1E-07 6.8E-12 99.8 25.7 128 272-413 165-310 (391)
123 PRK06207 aspartate aminotransf 98.9 3.4E-07 7.3E-12 100.2 26.0 131 270-415 175-326 (405)
124 TIGR01329 cysta_beta_ly_E cyst 98.9 3.1E-08 6.7E-13 107.7 17.6 126 270-415 128-265 (378)
125 PRK04635 histidinol-phosphate 98.9 7.1E-08 1.5E-12 103.3 20.0 127 272-416 146-289 (354)
126 PRK07682 hypothetical protein; 98.9 1.1E-07 2.3E-12 102.6 21.2 131 270-414 151-300 (378)
127 TIGR02379 ECA_wecE TDP-4-keto- 98.9 3.5E-07 7.7E-12 99.4 25.0 184 62-350 9-205 (376)
128 TIGR01324 cysta_beta_ly_B cyst 98.9 3.8E-08 8.3E-13 107.0 17.4 126 270-415 132-268 (377)
129 PRK07582 cystathionine gamma-l 98.9 2.8E-08 6.1E-13 107.5 16.2 126 272-416 131-267 (366)
130 PLN03227 serine palmitoyltrans 98.9 1.1E-06 2.4E-11 96.0 28.6 126 272-413 137-281 (392)
131 PLN02590 probable tyrosine dec 98.9 4.7E-07 1E-11 102.6 25.9 146 273-420 287-454 (539)
132 PRK07505 hypothetical protein; 98.9 6.7E-07 1.5E-11 97.5 26.3 116 271-399 177-311 (402)
133 PRK03158 histidinol-phosphate 98.9 4.7E-07 1E-11 96.9 23.8 127 270-413 148-292 (359)
134 PRK15407 lipopolysaccharide bi 98.9 6.2E-07 1.4E-11 99.5 25.2 74 270-347 156-240 (438)
135 PLN02880 tyrosine decarboxylas 98.9 1.7E-07 3.6E-12 105.4 20.8 146 273-420 239-406 (490)
136 PRK00950 histidinol-phosphate 98.8 4.9E-08 1.1E-12 104.3 15.4 80 270-349 155-246 (361)
137 TIGR01265 tyr_nico_aTase tyros 98.8 1.2E-06 2.6E-11 95.6 26.5 133 270-416 166-324 (403)
138 PRK03080 phosphoserine aminotr 98.8 5E-09 1.1E-13 113.6 7.8 160 449-608 185-373 (378)
139 TIGR03537 DapC succinyldiamino 98.8 4.4E-07 9.6E-12 97.0 22.4 129 270-413 133-278 (350)
140 PRK08960 hypothetical protein; 98.8 1.1E-07 2.5E-12 102.9 17.9 131 270-414 162-309 (387)
141 PRK06460 hypothetical protein; 98.8 1.1E-07 2.3E-12 103.4 17.6 128 271-416 128-264 (376)
142 TIGR01325 O_suc_HS_sulf O-succ 98.8 1E-07 2.2E-12 103.7 17.2 128 270-416 136-273 (380)
143 PRK07504 O-succinylhomoserine 98.8 6.4E-08 1.4E-12 105.9 15.8 129 270-416 147-285 (398)
144 PRK07550 hypothetical protein; 98.8 1.2E-06 2.7E-11 94.8 25.4 131 270-414 160-310 (386)
145 PRK08045 cystathionine gamma-s 98.8 1.1E-07 2.4E-12 103.7 17.0 129 270-416 134-272 (386)
146 PRK09028 cystathionine beta-ly 98.8 1E-07 2.2E-12 104.3 16.6 126 270-416 143-280 (394)
147 PRK08249 cystathionine gamma-s 98.8 1.2E-07 2.7E-12 103.8 17.2 129 270-416 146-283 (398)
148 PRK06767 methionine gamma-lyas 98.8 8.3E-08 1.8E-12 104.5 15.8 131 270-417 143-282 (386)
149 PRK07503 methionine gamma-lyas 98.8 1.2E-07 2.7E-12 103.9 17.2 131 270-416 147-286 (403)
150 PRK08776 cystathionine gamma-s 98.8 1.6E-07 3.4E-12 103.1 18.0 128 270-416 142-280 (405)
151 PRK07810 O-succinylhomoserine 98.8 1.1E-07 2.3E-12 104.4 16.5 128 270-416 152-290 (403)
152 cd00610 OAT_like Acetyl ornith 98.8 6.8E-07 1.5E-11 97.0 22.5 126 273-414 191-333 (413)
153 cd00614 CGS_like CGS_like: Cys 98.8 1E-07 2.2E-12 103.0 16.0 128 270-416 122-260 (369)
154 PRK05968 hypothetical protein; 98.8 1.2E-07 2.6E-12 103.5 16.5 127 272-416 146-282 (389)
155 PRK07812 O-acetylhomoserine am 98.8 9.2E-08 2E-12 106.0 15.5 74 270-343 152-233 (436)
156 PRK09265 aminotransferase AlaT 98.8 2.4E-06 5.1E-11 93.3 25.2 72 270-341 165-255 (404)
157 PRK05942 aspartate aminotransf 98.8 1.8E-06 3.8E-11 93.9 23.9 130 270-413 167-316 (394)
158 PRK08361 aspartate aminotransf 98.7 2.6E-07 5.6E-12 100.3 17.3 133 270-417 163-316 (391)
159 PRK03321 putative aminotransfe 98.7 1.2E-06 2.7E-11 93.4 22.2 80 270-349 142-239 (352)
160 TIGR01328 met_gam_lyase methio 98.7 1.9E-07 4E-12 102.1 16.2 131 270-416 141-280 (391)
161 TIGR03576 pyridox_MJ0158 pyrid 98.7 1.9E-06 4E-11 92.8 23.5 122 272-411 135-271 (346)
162 PRK08363 alanine aminotransfer 98.7 1.6E-06 3.4E-11 94.4 23.1 136 270-416 163-318 (398)
163 PRK08861 cystathionine gamma-s 98.7 2.1E-07 4.5E-12 101.7 16.0 127 270-415 135-272 (388)
164 PRK07777 aminotransferase; Val 98.7 8.4E-07 1.8E-11 96.0 20.6 131 270-414 156-306 (387)
165 PRK09276 LL-diaminopimelate am 98.7 8.6E-07 1.9E-11 95.8 20.5 130 270-413 163-312 (385)
166 COG0436 Aspartate/tyrosine/aro 98.7 4.6E-06 1E-10 91.3 26.1 263 50-418 28-317 (393)
167 PRK07683 aminotransferase A; V 98.7 3.9E-06 8.5E-11 91.1 25.4 129 270-413 158-306 (387)
168 PRK06836 aspartate aminotransf 98.7 1.7E-06 3.8E-11 94.1 22.6 76 270-345 165-263 (394)
169 PRK08153 histidinol-phosphate 98.7 2.5E-06 5.5E-11 92.1 23.7 127 271-414 153-294 (369)
170 PRK05967 cystathionine beta-ly 98.7 2.6E-07 5.7E-12 101.1 15.7 128 270-416 146-283 (395)
171 PRK14807 histidinol-phosphate 98.7 1E-06 2.2E-11 94.3 19.9 128 272-417 147-286 (351)
172 PRK12566 glycine dehydrogenase 98.7 1.9E-07 4E-12 110.4 15.2 138 271-412 639-793 (954)
173 PRK07811 cystathionine gamma-s 98.7 2.5E-07 5.5E-12 100.9 15.3 129 270-416 143-281 (388)
174 PF00464 SHMT: Serine hydroxym 98.7 2E-07 4.4E-12 101.7 14.2 273 51-418 21-323 (399)
175 PRK05994 O-acetylhomoserine am 98.7 4.3E-07 9.3E-12 100.4 16.8 72 270-341 145-224 (427)
176 COG0399 WecE Predicted pyridox 98.7 1.1E-05 2.3E-10 87.6 26.8 248 62-422 13-277 (374)
177 PRK13355 bifunctional HTH-doma 98.7 5.3E-06 1.2E-10 93.8 25.7 72 270-341 278-368 (517)
178 PRK11706 TDP-4-oxo-6-deoxy-D-g 98.7 1.6E-06 3.4E-11 94.0 20.6 75 270-348 116-202 (375)
179 PLN00145 tyrosine/nicotianamin 98.7 3.7E-06 8.1E-11 92.9 23.9 139 270-416 187-346 (430)
180 PRK13238 tnaA tryptophanase/L- 98.7 6.1E-07 1.3E-11 100.2 17.4 131 272-414 176-336 (460)
181 PRK10534 L-threonine aldolase; 98.7 3.7E-06 8E-11 88.9 22.1 45 559-607 288-332 (333)
182 PRK07681 aspartate aminotransf 98.6 1.1E-05 2.5E-10 87.8 26.1 130 270-413 163-312 (399)
183 TIGR00707 argD acetylornithine 98.6 8.8E-06 1.9E-10 87.4 24.6 125 270-413 167-309 (379)
184 PLN02242 methionine gamma-lyas 98.6 7.3E-07 1.6E-11 98.4 16.5 128 270-414 159-298 (418)
185 TIGR02080 O_succ_thio_ly O-suc 98.6 9.6E-07 2.1E-11 96.3 17.3 128 270-415 133-270 (382)
186 PTZ00377 alanine aminotransfer 98.6 1.5E-05 3.4E-10 89.2 27.0 129 273-416 218-388 (481)
187 PRK01688 histidinol-phosphate 98.6 2.1E-06 4.6E-11 92.1 19.3 79 272-350 144-237 (351)
188 PRK06107 aspartate aminotransf 98.6 1.7E-05 3.7E-10 86.5 26.7 132 270-415 163-316 (402)
189 PRK06234 methionine gamma-lyas 98.6 9.4E-07 2E-11 96.8 16.6 129 270-414 146-285 (400)
190 TIGR01140 L_thr_O3P_dcar L-thr 98.6 1.1E-06 2.3E-11 93.5 16.5 127 273-416 125-267 (330)
191 PRK08574 cystathionine gamma-s 98.6 7.3E-07 1.6E-11 97.3 15.5 128 270-416 133-272 (385)
192 PRK03317 histidinol-phosphate 98.6 6.2E-06 1.3E-10 88.7 22.4 125 272-413 159-298 (368)
193 PRK05939 hypothetical protein; 98.6 7.9E-07 1.7E-11 97.5 15.5 71 270-341 128-207 (397)
194 PLN02187 rooty/superroot1 98.6 4.2E-05 9.1E-10 85.5 29.4 132 270-414 201-358 (462)
195 PRK01533 histidinol-phosphate 98.6 1.1E-05 2.5E-10 87.2 24.1 127 270-413 148-292 (366)
196 PTZ00433 tyrosine aminotransfe 98.6 2.1E-05 4.5E-10 86.2 26.4 130 270-414 174-329 (412)
197 PRK08912 hypothetical protein; 98.6 4.1E-06 8.9E-11 90.7 20.5 131 270-414 156-306 (387)
198 PLN02656 tyrosine transaminase 98.6 1.5E-05 3.2E-10 87.3 24.9 131 270-414 166-323 (409)
199 PRK04073 rocD ornithine--oxo-a 98.6 1.4E-05 2.9E-10 87.2 23.8 127 270-414 183-327 (396)
200 PLN02509 cystathionine beta-ly 98.6 1.9E-06 4.1E-11 96.2 17.4 129 270-416 214-352 (464)
201 PRK00854 rocD ornithine--oxo-a 98.6 2.2E-05 4.8E-10 85.4 25.3 127 270-414 184-328 (401)
202 PRK04781 histidinol-phosphate 98.5 1.9E-05 4.2E-10 85.1 24.0 128 271-416 150-295 (364)
203 TIGR01326 OAH_OAS_sulfhy OAH/O 98.5 7.6E-07 1.6E-11 98.1 13.2 74 270-343 139-220 (418)
204 PRK06176 cystathionine gamma-s 98.5 1.8E-06 4E-11 94.0 16.0 127 270-416 131-269 (380)
205 PRK12414 putative aminotransfe 98.5 6.9E-06 1.5E-10 89.1 20.4 130 270-414 159-308 (384)
206 TIGR03539 DapC_actino succinyl 98.5 2E-05 4.3E-10 84.6 23.6 127 272-413 141-289 (357)
207 TIGR01264 tyr_amTase_E tyrosin 98.5 4.6E-05 9.9E-10 83.0 26.5 132 270-415 165-321 (401)
208 PF00155 Aminotran_1_2: Aminot 98.5 5.8E-06 1.3E-10 88.0 19.1 125 273-413 148-295 (363)
209 PRK14809 histidinol-phosphate 98.5 5.6E-05 1.2E-09 81.0 26.1 78 272-349 153-245 (357)
210 PRK06348 aspartate aminotransf 98.5 1.6E-05 3.5E-10 86.1 22.1 132 270-415 159-309 (384)
211 PRK07671 cystathionine beta-ly 98.5 3.3E-06 7.2E-11 91.8 16.2 128 270-416 131-269 (377)
212 PRK05166 histidinol-phosphate 98.5 3.7E-05 8.1E-10 82.9 24.2 127 270-413 156-302 (371)
213 PRK02610 histidinol-phosphate 98.5 4.3E-05 9.3E-10 82.6 24.5 78 272-349 167-257 (374)
214 PRK09082 methionine aminotrans 98.5 8.1E-06 1.8E-10 88.5 18.9 130 270-413 160-309 (386)
215 PRK03244 argD acetylornithine 98.5 3.9E-05 8.5E-10 83.4 24.1 126 271-414 181-323 (398)
216 PRK06358 threonine-phosphate d 98.5 0.00013 2.8E-09 78.4 27.8 128 271-415 139-286 (354)
217 PLN00175 aminotransferase fami 98.4 9.5E-06 2.1E-10 89.2 19.2 131 270-414 184-333 (413)
218 PRK07337 aminotransferase; Val 98.4 1.3E-05 2.8E-10 86.8 19.7 129 270-414 160-307 (388)
219 PRK06290 aspartate aminotransf 98.4 5.3E-05 1.2E-09 83.3 24.5 129 270-414 176-324 (410)
220 TIGR00461 gcvP glycine dehydro 98.4 5.7E-06 1.2E-10 98.5 17.4 138 272-412 627-784 (939)
221 PRK09148 aminotransferase; Val 98.4 2.8E-05 6.1E-10 85.1 21.5 130 271-414 163-312 (405)
222 PRK06084 O-acetylhomoserine am 98.4 4.4E-06 9.5E-11 92.4 14.8 140 270-416 140-311 (425)
223 PRK08247 cystathionine gamma-s 98.4 5.4E-06 1.2E-10 89.7 15.2 129 270-417 133-272 (366)
224 PRK06434 cystathionine gamma-l 98.4 1.2E-05 2.7E-10 87.7 17.9 125 270-415 144-280 (384)
225 PRK07050 cystathionine beta-ly 98.3 7.9E-06 1.7E-10 89.5 15.2 128 270-416 147-285 (394)
226 PLN00143 tyrosine/nicotianamin 98.3 0.00022 4.8E-09 78.2 26.3 72 270-341 167-257 (409)
227 PF00282 Pyridoxal_deC: Pyrido 98.3 1.4E-05 3.1E-10 86.9 16.8 145 274-420 195-361 (373)
228 TIGR01885 Orn_aminotrans ornit 98.3 0.00012 2.7E-09 79.9 24.2 125 272-414 185-327 (401)
229 TIGR03531 selenium_SpcS O-phos 98.3 2.1E-05 4.6E-10 87.3 18.1 105 293-413 230-344 (444)
230 PF01041 DegT_DnrJ_EryC1: DegT 98.3 7.5E-06 1.6E-10 88.3 14.1 225 96-420 25-267 (363)
231 PLN02263 serine decarboxylase 98.3 5.7E-05 1.2E-09 84.3 21.2 138 273-417 228-384 (470)
232 PRK07590 L,L-diaminopimelate a 98.3 0.00018 3.8E-09 78.8 24.5 138 272-413 175-335 (409)
233 PLN02231 alanine transaminase 98.3 0.00051 1.1E-08 78.3 28.9 130 273-417 271-441 (534)
234 PRK07366 succinyldiaminopimela 98.3 0.00018 3.8E-09 78.1 24.2 129 271-413 163-312 (388)
235 PRK01278 argD acetylornithine 98.3 0.00027 5.8E-09 76.7 25.6 125 270-413 172-314 (389)
236 TIGR03542 DAPAT_plant LL-diami 98.3 0.00011 2.3E-09 80.4 22.4 74 272-345 172-265 (402)
237 PRK08068 transaminase; Reviewe 98.3 0.00023 5.1E-09 77.2 24.9 130 270-414 164-314 (389)
238 COG0079 HisC Histidinol-phosph 98.3 0.00022 4.7E-09 77.3 24.4 237 58-414 32-283 (356)
239 TIGR00461 gcvP glycine dehydro 98.3 0.0001 2.2E-09 88.0 23.3 140 276-417 196-364 (939)
240 PRK08175 aminotransferase; Val 98.3 0.0002 4.3E-09 78.0 23.8 129 272-414 163-311 (395)
241 PRK14808 histidinol-phosphate 98.2 0.00061 1.3E-08 72.8 26.4 124 273-414 138-273 (335)
242 PRK05664 threonine-phosphate d 98.2 0.00047 1E-08 73.4 24.0 124 273-413 124-262 (330)
243 PRK07269 cystathionine gamma-s 98.2 3.7E-05 8E-10 83.4 15.8 127 270-415 133-270 (364)
244 PRK02627 acetylornithine amino 98.2 0.00052 1.1E-08 74.3 24.3 125 270-413 179-321 (396)
245 COG0075 Serine-pyruvate aminot 98.1 2E-06 4.3E-11 93.2 5.2 98 446-544 181-285 (383)
246 TIGR03538 DapC_gpp succinyldia 98.1 8.9E-05 1.9E-09 80.6 17.7 127 271-412 163-315 (393)
247 PRK08636 aspartate aminotransf 98.1 0.0011 2.5E-08 72.4 26.2 129 271-413 173-321 (403)
248 PRK06959 putative threonine-ph 98.1 0.0009 1.9E-08 71.7 24.7 125 273-414 130-269 (339)
249 COG0156 BioF 7-keto-8-aminopel 98.1 0.0028 6.1E-08 69.4 28.0 126 274-414 172-314 (388)
250 PRK03967 histidinol-phosphate 98.1 0.00027 5.8E-09 75.5 19.8 77 272-349 139-227 (337)
251 PRK06425 histidinol-phosphate 98.1 0.00075 1.6E-08 71.8 22.9 78 272-349 121-216 (332)
252 PRK15481 transcriptional regul 98.1 0.00043 9.4E-09 76.3 21.7 126 271-413 209-356 (431)
253 COG0112 GlyA Glycine/serine hy 98.1 3E-05 6.4E-10 83.3 11.6 267 50-419 26-308 (413)
254 PRK07049 methionine gamma-lyas 98.1 9.1E-05 2E-09 82.1 15.9 126 272-416 173-314 (427)
255 PLN02624 ornithine-delta-amino 98.0 0.00053 1.2E-08 77.0 22.0 124 272-413 223-364 (474)
256 KOG3846|consensus 98.0 4.5E-05 9.8E-10 79.4 11.9 282 50-414 67-376 (465)
257 PLN02955 8-amino-7-oxononanoat 98.0 0.0012 2.6E-08 74.0 24.0 120 274-408 250-385 (476)
258 PRK06702 O-acetylhomoserine am 98.0 0.00012 2.5E-09 81.3 15.5 69 269-340 143-222 (432)
259 PRK07392 threonine-phosphate d 98.0 0.00059 1.3E-08 73.3 20.4 127 272-417 147-290 (360)
260 COG2008 GLY1 Threonine aldolas 98.0 0.001 2.2E-08 71.0 21.4 131 274-420 132-278 (342)
261 PRK05093 argD bifunctional N-s 98.0 0.0025 5.3E-08 69.8 25.1 125 270-413 181-323 (403)
262 PLN02672 methionine S-methyltr 98.0 0.003 6.5E-08 76.9 27.7 127 274-414 829-990 (1082)
263 PRK02936 argD acetylornithine 98.0 0.0011 2.3E-08 71.6 22.0 124 270-412 164-305 (377)
264 KOG0257|consensus 98.0 0.00037 8E-09 75.5 17.7 139 268-419 167-331 (420)
265 PLN02607 1-aminocyclopropane-1 97.9 0.00092 2E-08 74.6 21.1 127 271-413 198-354 (447)
266 PLN02376 1-aminocyclopropane-1 97.9 0.00028 6E-09 79.7 16.8 128 271-413 197-354 (496)
267 TIGR03246 arg_catab_astC succi 97.9 0.0036 7.8E-08 68.5 25.0 126 270-414 176-319 (397)
268 PF01276 OKR_DC_1: Orn/Lys/Arg 97.9 9.1E-05 2E-09 81.5 11.5 129 275-419 170-326 (417)
269 PF00266 Aminotran_5: Aminotra 97.9 1.3E-05 2.8E-10 86.2 4.9 151 446-598 189-371 (371)
270 TIGR02407 ectoine_ectB diamino 97.9 0.0026 5.6E-08 70.2 23.0 122 273-413 194-334 (412)
271 PRK07865 N-succinyldiaminopime 97.9 0.0013 2.8E-08 70.7 20.0 127 272-413 147-295 (364)
272 PRK12381 bifunctional succinyl 97.8 0.0056 1.2E-07 67.2 24.6 125 270-413 180-322 (406)
273 PRK09147 succinyldiaminopimela 97.8 0.0014 3.1E-08 71.3 18.8 127 271-412 164-316 (396)
274 COG1921 SelA Selenocysteine sy 97.7 0.00045 9.8E-09 75.0 14.0 107 268-388 151-271 (395)
275 PRK09440 avtA valine--pyruvate 97.7 0.0044 9.5E-08 67.9 22.2 78 270-348 176-270 (416)
276 PRK04260 acetylornithine amino 97.7 0.0081 1.8E-07 65.0 23.9 123 271-412 163-303 (375)
277 PTZ00376 aspartate aminotransf 97.7 0.0043 9.4E-08 67.9 21.9 134 272-413 175-337 (404)
278 PLN02368 alanine transaminase 97.7 0.001 2.2E-08 73.4 16.4 131 273-419 210-383 (407)
279 cd00617 Tnase_like Tryptophana 97.7 0.00072 1.6E-08 75.1 15.1 130 273-414 152-311 (431)
280 TIGR03801 asp_4_decarbox aspar 97.7 0.002 4.2E-08 73.3 18.5 74 270-343 237-327 (521)
281 KOG2862|consensus 97.7 0.00018 3.8E-09 75.3 9.1 157 446-603 193-377 (385)
282 PLN02409 serine--glyoxylate am 97.6 5.4E-05 1.2E-09 82.9 5.2 162 447-610 190-374 (401)
283 PRK05964 adenosylmethionine--8 97.6 0.019 4.1E-07 63.4 25.3 130 272-413 198-346 (423)
284 TIGR03301 PhnW-AepZ 2-aminoeth 97.6 0.0001 2.3E-09 77.9 7.2 157 447-605 176-354 (355)
285 TIGR03811 tyr_de_CO2_Ent tyros 97.6 0.0078 1.7E-07 69.6 22.8 139 274-413 279-475 (608)
286 PRK06058 4-aminobutyrate amino 97.6 0.02 4.3E-07 63.9 25.5 123 272-413 218-358 (443)
287 PRK06777 4-aminobutyrate amino 97.6 0.036 7.9E-07 61.4 26.9 123 272-413 197-337 (421)
288 PRK08360 4-aminobutyrate amino 97.6 0.055 1.2E-06 60.4 28.1 123 272-413 203-343 (443)
289 PRK09264 diaminobutyrate--2-ox 97.6 0.05 1.1E-06 60.3 27.2 122 273-413 198-338 (425)
290 COG4992 ArgD Ornithine/acetylo 97.5 0.005 1.1E-07 67.1 18.5 128 269-414 180-324 (404)
291 TIGR02618 tyr_phenol_ly tyrosi 97.5 0.0028 6.1E-08 70.4 16.7 130 274-414 171-329 (450)
292 PRK09257 aromatic amino acid a 97.5 0.0043 9.4E-08 67.6 18.1 132 272-413 171-332 (396)
293 PRK15029 arginine decarboxylas 97.5 0.0018 3.9E-08 76.3 15.7 129 273-415 312-466 (755)
294 PF01053 Cys_Met_Meta_PP: Cys/ 97.5 0.0025 5.4E-08 69.9 15.2 128 270-416 137-277 (386)
295 PRK13479 2-aminoethylphosphona 97.5 0.00023 5E-09 76.3 7.1 97 447-543 182-284 (368)
296 TIGR02326 transamin_PhnW 2-ami 97.4 0.00027 5.8E-09 75.8 7.0 158 447-606 180-360 (363)
297 TIGR00713 hemL glutamate-1-sem 97.4 0.033 7.1E-07 61.3 23.5 130 272-413 194-340 (423)
298 PRK06855 aminotransferase; Val 97.4 0.011 2.4E-07 65.5 19.8 128 272-416 170-328 (433)
299 PRK05839 hypothetical protein; 97.4 0.014 2.9E-07 63.3 19.9 77 272-348 154-254 (374)
300 PRK09792 4-aminobutyrate trans 97.4 0.053 1.1E-06 60.1 24.8 124 272-413 197-337 (421)
301 COG2873 MET17 O-acetylhomoseri 97.3 0.0035 7.6E-08 67.3 14.0 75 269-344 143-226 (426)
302 TIGR03372 putres_am_tran putre 97.3 0.038 8.3E-07 61.7 22.9 125 273-413 224-366 (442)
303 PLN00144 acetylornithine trans 97.3 0.09 1.9E-06 57.5 25.3 123 272-412 166-305 (382)
304 PF03841 SelA: L-seryl-tRNA se 97.3 0.00013 2.8E-09 78.5 2.9 79 269-349 132-234 (367)
305 PLN02450 1-aminocyclopropane-1 97.3 0.0058 1.3E-07 68.6 16.2 127 272-414 190-348 (468)
306 KOG2467|consensus 97.3 0.0032 6.8E-08 67.4 13.0 284 50-414 40-341 (477)
307 PRK05769 4-aminobutyrate amino 97.3 0.11 2.3E-06 58.1 25.9 121 273-413 221-358 (441)
308 PRK13237 tyrosine phenol-lyase 97.3 0.014 3E-07 65.2 18.1 110 293-414 206-336 (460)
309 PRK09221 beta alanine--pyruvat 97.2 0.026 5.6E-07 63.1 20.2 130 272-414 217-366 (445)
310 PRK11522 putrescine--2-oxoglut 97.2 0.077 1.7E-06 59.6 23.7 125 273-413 231-373 (459)
311 PRK03715 argD acetylornithine 97.2 0.031 6.7E-07 61.4 20.2 123 271-413 177-317 (395)
312 PRK08117 4-aminobutyrate amino 97.2 0.18 3.9E-06 55.9 25.8 124 273-413 207-346 (433)
313 COG0160 GabT 4-aminobutyrate a 97.1 0.32 6.9E-06 54.4 26.5 123 273-414 222-361 (447)
314 KOG0259|consensus 97.1 0.13 2.7E-06 55.9 22.0 51 558-610 382-435 (447)
315 COG1168 MalY Bifunctional PLP- 97.1 0.047 1E-06 59.1 18.9 137 270-419 155-314 (388)
316 PLN02760 4-aminobutyrate:pyruv 97.0 0.24 5.1E-06 56.4 25.5 130 273-413 260-407 (504)
317 PRK08354 putative aminotransfe 97.0 0.11 2.3E-06 54.9 21.1 67 273-340 117-196 (311)
318 PRK13578 ornithine decarboxyla 97.0 0.013 2.8E-07 68.8 15.1 137 274-419 283-445 (720)
319 PRK08593 4-aminobutyrate amino 97.0 0.34 7.5E-06 54.1 25.9 123 272-413 206-346 (445)
320 KOG1368|consensus 96.9 0.013 2.8E-07 61.4 13.0 49 559-609 321-370 (384)
321 PRK04612 argD acetylornithine 96.9 0.19 4E-06 55.6 23.0 124 273-413 187-326 (408)
322 TIGR00709 dat 2,4-diaminobutyr 96.8 0.42 9.1E-06 53.3 25.1 122 272-413 205-344 (442)
323 KOG1402|consensus 96.8 0.17 3.8E-06 53.9 19.8 252 61-414 75-348 (427)
324 PRK06917 hypothetical protein; 96.7 0.46 1E-05 53.2 24.6 125 273-413 199-344 (447)
325 PF01212 Beta_elim_lyase: Beta 96.7 0.0011 2.3E-08 70.1 3.3 77 272-348 123-215 (290)
326 PRK07678 aminotransferase; Val 96.6 1.4 3E-05 49.5 27.5 129 272-412 212-358 (451)
327 PRK15399 lysine decarboxylase 96.6 0.06 1.3E-06 63.3 17.0 127 275-415 299-444 (713)
328 PRK09275 aspartate aminotransf 96.6 0.055 1.2E-06 61.8 16.4 74 270-343 238-328 (527)
329 COG1167 ARO8 Transcriptional r 96.6 0.085 1.8E-06 59.2 17.6 126 273-414 226-374 (459)
330 KOG1404|consensus 96.6 0.15 3.4E-06 55.3 18.4 123 277-414 213-353 (442)
331 KOG1360|consensus 96.6 0.42 9.2E-06 52.2 21.3 129 273-414 303-447 (570)
332 KOG1383|consensus 96.6 0.066 1.4E-06 59.2 15.6 142 270-420 215-380 (491)
333 PRK06918 4-aminobutyrate amino 96.5 1.2 2.6E-05 49.8 26.1 122 273-413 219-358 (451)
334 PLN02855 Bifunctional selenocy 96.4 0.0062 1.3E-07 67.0 6.9 159 449-609 226-419 (424)
335 PRK07495 4-aminobutyrate amino 96.4 1.6 3.4E-05 48.6 25.8 123 272-413 197-337 (425)
336 PRK07480 putative aminotransfe 96.4 1.8 3.8E-05 48.7 26.2 126 273-413 219-364 (456)
337 PF00202 Aminotran_3: Aminotra 96.3 0.075 1.6E-06 57.2 14.6 124 272-413 176-316 (339)
338 PRK05639 4-aminobutyrate amino 96.3 1.5 3.2E-05 49.3 25.2 122 272-413 221-360 (457)
339 PRK15400 lysine decarboxylase 96.3 0.062 1.3E-06 63.2 14.5 123 276-415 300-444 (714)
340 PRK06062 hypothetical protein; 96.3 1.6 3.5E-05 48.9 25.4 125 273-413 214-357 (451)
341 PLN02651 cysteine desulfurase 96.3 0.011 2.5E-07 63.5 7.9 140 447-596 189-364 (364)
342 COG0520 csdA Selenocysteine ly 96.2 0.013 2.7E-07 64.8 7.7 161 446-607 212-404 (405)
343 cd06453 SufS_like Cysteine des 96.2 0.014 3E-07 62.7 7.9 151 449-602 192-373 (373)
344 PRK09295 bifunctional cysteine 96.1 0.01 2.3E-07 64.7 6.8 159 447-607 215-403 (406)
345 KOG1359|consensus 96.1 0.48 1E-05 49.9 18.1 119 284-418 204-339 (417)
346 TIGR03235 DNA_S_dndA cysteine 95.8 0.015 3.3E-07 62.0 6.3 93 448-546 190-282 (353)
347 TIGR01979 sufS cysteine desulf 95.8 0.02 4.4E-07 62.1 7.3 159 448-608 211-401 (403)
348 PRK12389 glutamate-1-semialdeh 95.6 1.1 2.4E-05 49.8 20.0 124 273-413 200-341 (428)
349 PRK07481 hypothetical protein; 95.5 1.2 2.5E-05 50.0 20.0 130 272-413 212-360 (449)
350 PRK06105 aminotransferase; Pro 95.5 1.5 3.2E-05 49.4 20.5 130 273-413 218-365 (460)
351 PRK07030 adenosylmethionine--8 95.4 1.2 2.6E-05 50.2 19.7 130 272-413 213-362 (466)
352 KOG1357|consensus 95.4 0.55 1.2E-05 52.0 16.1 114 294-419 302-429 (519)
353 cd06451 AGAT_like Alanine-glyo 95.4 0.021 4.6E-07 60.8 5.4 155 448-605 176-354 (356)
354 PLN02397 aspartate transaminas 95.3 0.37 8.1E-06 53.3 15.0 136 271-414 192-356 (423)
355 KOG0053|consensus 95.3 0.32 6.9E-06 53.5 13.9 77 270-348 159-247 (409)
356 PRK06541 hypothetical protein; 95.2 0.81 1.8E-05 51.4 17.4 126 273-413 221-365 (460)
357 PF02347 GDC-P: Glycine cleava 95.2 2.1 4.5E-05 47.8 20.0 138 271-413 195-364 (429)
358 PLN02482 glutamate-1-semialdeh 95.2 1.4 3E-05 49.9 19.1 123 273-413 246-387 (474)
359 PRK05965 hypothetical protein; 95.1 3.5 7.6E-05 46.4 22.2 131 272-413 214-362 (459)
360 PRK08637 hypothetical protein; 95.1 1.4 3E-05 48.0 18.5 70 272-341 145-242 (388)
361 TIGR01977 am_tr_V_EF2568 cyste 95.1 0.046 1E-06 58.6 6.8 156 448-604 189-375 (376)
362 PRK12403 putative aminotransfe 95.1 3.2 6.8E-05 46.7 21.6 127 273-413 222-367 (460)
363 TIGR03392 FeS_syn_CsdA cystein 95.0 0.054 1.2E-06 58.9 7.3 158 449-608 210-395 (398)
364 COG1448 TyrB Aspartate/tyrosin 95.0 0.17 3.6E-06 55.0 10.4 122 279-414 180-333 (396)
365 PRK07482 hypothetical protein; 94.9 2 4.4E-05 48.3 19.7 131 272-413 219-367 (461)
366 PRK13360 omega amino acid--pyr 94.8 1 2.2E-05 50.4 16.9 130 273-414 215-363 (442)
367 TIGR00700 GABAtrnsam 4-aminobu 94.8 0.7 1.5E-05 51.1 15.4 123 272-413 196-336 (420)
368 PRK10874 cysteine sulfinate de 94.7 0.073 1.6E-06 57.9 7.2 158 449-608 213-398 (401)
369 PRK06943 adenosylmethionine--8 94.7 3.7 7.9E-05 46.1 20.7 130 272-413 220-368 (453)
370 TIGR02006 IscS cysteine desulf 94.4 0.07 1.5E-06 58.3 6.2 154 448-610 194-379 (402)
371 PRK06082 4-aminobutyrate amino 94.3 2.7 5.8E-05 47.3 18.7 103 293-413 257-368 (459)
372 PRK07046 aminotransferase; Val 94.2 3.4 7.3E-05 46.5 19.1 127 273-412 218-363 (453)
373 KOG0256|consensus 94.2 0.51 1.1E-05 51.7 11.8 131 269-414 222-379 (471)
374 PRK06916 adenosylmethionine--8 93.7 7.9 0.00017 43.6 20.9 130 272-413 222-371 (460)
375 PRK04013 argD acetylornithine/ 93.7 2.9 6.3E-05 45.6 17.0 101 271-392 160-278 (364)
376 KOG0629|consensus 93.6 0.98 2.1E-05 49.8 12.7 140 274-420 254-420 (510)
377 TIGR01976 am_tr_V_VC1184 cyste 93.5 0.17 3.7E-06 54.8 7.1 151 449-602 209-397 (397)
378 TIGR03403 nifS_epsilon cystein 93.4 0.14 3.1E-06 55.3 6.2 153 448-609 192-376 (382)
379 KOG1401|consensus 93.2 6.5 0.00014 43.4 18.2 111 294-413 236-352 (433)
380 COG0626 MetC Cystathionine bet 93.2 2.2 4.8E-05 47.2 15.1 127 272-416 148-285 (396)
381 PRK08088 4-aminobutyrate amino 92.7 12 0.00026 41.4 20.1 125 272-413 198-338 (425)
382 PRK06149 hypothetical protein; 92.7 6.7 0.00015 48.4 19.7 104 293-413 773-885 (972)
383 COG0001 HemL Glutamate-1-semia 92.6 4.2 9E-05 45.3 16.0 122 272-412 199-341 (432)
384 PRK06173 adenosylmethionine--8 92.3 10 0.00022 42.4 19.0 128 272-413 205-352 (429)
385 PRK06938 diaminobutyrate--2-ox 92.2 3.4 7.4E-05 46.6 15.2 121 273-413 231-369 (464)
386 PRK02948 cysteine desulfurase; 92.1 0.23 5E-06 53.6 5.7 155 448-611 190-377 (381)
387 TIGR03251 LAT_fam L-lysine 6-t 91.9 7 0.00015 43.5 17.1 125 272-412 217-357 (431)
388 TIGR01814 kynureninase kynuren 91.6 0.44 9.6E-06 52.1 7.3 154 448-605 223-404 (406)
389 TIGR01140 L_thr_O3P_dcar L-thr 91.4 0.52 1.1E-05 50.1 7.3 132 451-602 187-329 (330)
390 TIGR00508 bioA adenosylmethion 91.1 29 0.00063 38.6 27.2 128 273-414 207-354 (427)
391 PRK05630 adenosylmethionine--8 91.0 16 0.00035 40.6 18.8 129 272-413 199-347 (422)
392 COG0161 BioA Adenosylmethionin 90.8 9.4 0.0002 42.9 16.4 113 286-412 228-359 (449)
393 TIGR03402 FeS_nifS cysteine de 89.8 0.56 1.2E-05 50.6 5.8 155 448-611 188-375 (379)
394 PRK02769 histidine decarboxyla 89.7 2.9 6.3E-05 45.9 11.4 141 448-607 221-371 (380)
395 COG1982 LdcC Arginine/lysine/o 89.6 4.2 9.1E-05 46.7 12.7 137 271-419 163-318 (557)
396 PRK08361 aspartate aminotransf 89.4 0.79 1.7E-05 49.8 6.7 142 451-606 230-388 (391)
397 PRK07036 hypothetical protein; 89.2 3.5 7.6E-05 46.5 11.9 130 272-413 219-368 (466)
398 PRK00062 glutamate-1-semialdeh 88.8 1.5 3.2E-05 48.7 8.4 124 272-412 196-337 (426)
399 PRK00950 histidinol-phosphate 88.7 1.8 4E-05 46.1 8.9 126 458-605 223-359 (361)
400 KOG2142|consensus 88.2 0.54 1.2E-05 54.0 4.4 156 298-475 194-363 (728)
401 PRK07777 aminotransferase; Val 88.1 2.1 4.5E-05 46.4 8.9 141 450-606 224-384 (387)
402 PRK06148 hypothetical protein; 87.8 15 0.00034 45.5 17.0 123 273-413 784-925 (1013)
403 PRK00615 glutamate-1-semialdeh 87.5 4.4 9.5E-05 45.3 11.1 123 273-412 201-341 (433)
404 PLN02724 Molybdenum cofactor s 87.2 1.4 3.1E-05 53.0 7.5 159 447-606 251-486 (805)
405 PLN03226 serine hydroxymethylt 87.0 1.2 2.7E-05 50.3 6.5 157 448-607 236-418 (475)
406 PRK06931 diaminobutyrate--2-ox 86.9 30 0.00066 38.9 17.5 120 273-413 225-363 (459)
407 PRK12566 glycine dehydrogenase 86.3 16 0.00036 44.6 15.6 142 271-417 206-378 (954)
408 COG0403 GcvP Glycine cleavage 85.3 46 0.00099 37.2 16.9 140 273-414 210-379 (450)
409 PRK08088 4-aminobutyrate amino 85.1 16 0.00035 40.4 14.1 139 457-607 267-422 (425)
410 PRK09276 LL-diaminopimelate am 84.9 4.7 0.0001 43.6 9.5 131 454-600 235-380 (385)
411 PRK06209 glutamate-1-semialdeh 84.8 5 0.00011 44.6 9.9 115 283-412 194-328 (431)
412 PRK14012 cysteine desulfurase; 84.1 2 4.3E-05 47.0 6.2 160 448-614 196-385 (404)
413 PRK07483 hypothetical protein; 81.5 9.5 0.00021 42.7 10.4 106 293-413 229-344 (443)
414 COG3977 Alanine-alpha-ketoisov 81.0 86 0.0019 33.8 21.2 88 261-349 167-271 (417)
415 PRK14807 histidinol-phosphate 79.5 19 0.00042 38.4 11.6 127 457-605 212-349 (351)
416 PRK12414 putative aminotransfe 79.2 11 0.00025 40.8 9.9 134 452-602 229-381 (384)
417 PRK09331 Sep-tRNA:Cys-tRNA syn 78.7 4.1 8.9E-05 44.4 6.2 152 448-610 210-383 (387)
418 PRK08742 adenosylmethionine--8 77.2 18 0.00038 41.0 10.9 128 273-412 236-382 (472)
419 PTZ00094 serine hydroxymethylt 77.0 4.2 9.1E-05 45.5 5.8 150 448-609 235-409 (452)
420 cd06452 SepCysS Sep-tRNA:Cys-t 76.4 6.8 0.00015 42.0 7.1 149 449-606 192-360 (361)
421 KOG0633|consensus 76.0 32 0.0007 36.2 11.2 79 268-346 155-247 (375)
422 KOG0258|consensus 75.5 15 0.00033 40.4 9.2 85 524-609 363-474 (475)
423 PRK08912 hypothetical protein; 74.4 18 0.0004 39.1 9.8 138 451-605 225-383 (387)
424 PLN00175 aminotransferase fami 73.1 22 0.00049 39.1 10.2 137 454-606 255-411 (413)
425 TIGR02617 tnaA_trp_ase tryptop 73.1 12 0.00027 42.1 8.0 123 279-414 191-345 (467)
426 PF06838 Met_gamma_lyase: Meth 72.8 29 0.00062 38.2 10.4 77 270-349 151-246 (403)
427 PRK00062 glutamate-1-semialdeh 71.9 40 0.00086 37.4 11.9 126 465-608 273-424 (426)
428 PRK00451 glycine dehydrogenase 71.1 4.5 9.8E-05 44.8 4.2 158 447-606 254-446 (447)
429 COG1003 GcvP Glycine cleavage 70.3 1.1E+02 0.0023 34.6 14.2 137 269-412 200-363 (496)
430 cd00613 GDC-P Glycine cleavage 69.6 8.5 0.00019 41.5 5.9 153 448-602 211-398 (398)
431 PRK07986 adenosylmethionine--8 69.2 34 0.00073 38.2 10.6 127 273-413 204-350 (428)
432 cd06454 KBL_like KBL_like; thi 67.4 7 0.00015 41.1 4.5 143 449-605 193-348 (349)
433 PRK08297 L-lysine aminotransfe 67.2 28 0.00061 39.0 9.4 126 272-413 224-365 (443)
434 PRK07865 N-succinyldiaminopime 66.5 29 0.00063 37.2 9.2 133 451-602 216-362 (364)
435 PRK00011 glyA serine hydroxyme 66.1 11 0.00024 41.2 6.0 145 449-607 219-388 (416)
436 PRK09257 aromatic amino acid a 65.3 39 0.00085 36.7 10.0 136 454-604 242-394 (396)
437 PLN02397 aspartate transaminas 65.0 50 0.0011 36.5 10.8 138 454-607 265-420 (423)
438 PRK09082 methionine aminotrans 65.0 18 0.00039 39.2 7.2 133 454-602 232-383 (386)
439 PRK08960 hypothetical protein; 64.9 26 0.00056 38.0 8.4 136 452-604 228-383 (387)
440 TIGR00699 GABAtrns_euk 4-amino 62.6 29 0.00062 39.3 8.4 122 271-413 249-388 (464)
441 PF05889 SLA_LP_auto_ag: Solub 62.5 62 0.0013 35.8 10.6 59 272-330 153-234 (389)
442 cd00378 SHMT Serine-glycine hy 62.2 15 0.00032 39.9 5.9 146 449-608 215-385 (402)
443 PF12897 Aminotran_MocR: Alani 59.9 88 0.0019 34.8 11.0 78 271-348 170-275 (425)
444 PRK03967 histidinol-phosphate 58.5 77 0.0017 33.7 10.5 129 455-610 201-336 (337)
445 TIGR03812 tyr_de_CO2_Arch tyro 57.6 30 0.00064 36.9 7.2 144 454-604 221-372 (373)
446 PRK09147 succinyldiaminopimela 54.3 87 0.0019 34.0 10.3 134 453-605 240-393 (396)
447 TIGR03799 NOD_PanD_pyr putativ 52.4 27 0.00059 40.1 6.1 148 449-600 324-517 (522)
448 TIGR03538 DapC_gpp succinyldia 51.5 92 0.002 33.8 9.9 133 454-605 240-392 (393)
449 PRK05839 hypothetical protein; 51.3 1.2E+02 0.0027 32.7 10.8 133 454-606 228-372 (374)
450 TIGR00858 bioF 8-amino-7-oxono 51.1 24 0.00052 37.1 5.2 137 450-603 209-360 (360)
451 PRK07046 aminotransferase; Val 49.5 1.9E+02 0.0041 32.6 12.2 134 465-607 293-449 (453)
452 PLN03032 serine decarboxylase; 49.0 41 0.00089 37.0 6.7 143 449-603 225-371 (374)
453 PRK13520 L-tyrosine decarboxyl 48.7 53 0.0011 34.9 7.4 149 452-607 214-370 (371)
454 PLN02376 1-aminocyclopropane-1 47.7 2.1E+02 0.0045 32.7 12.2 139 455-609 276-439 (496)
455 PLN02450 1-aminocyclopropane-1 47.6 1.7E+02 0.0036 33.0 11.4 141 455-609 269-431 (468)
456 PRK09221 beta alanine--pyruvat 47.6 3.6E+02 0.0078 30.2 14.0 131 465-607 296-442 (445)
457 PLN02974 adenosylmethionine-8- 45.1 2.1E+02 0.0046 34.9 12.3 130 273-410 584-732 (817)
458 PRK07392 threonine-phosphate d 44.5 2.1E+02 0.0045 30.6 11.2 132 455-607 213-358 (360)
459 TIGR01141 hisC histidinol-phos 43.3 23 0.00049 37.5 3.5 130 453-602 205-345 (346)
460 PRK07337 aminotransferase; Val 41.3 1.4E+02 0.003 32.3 9.3 132 453-602 227-383 (388)
461 PRK06149 hypothetical protein; 38.9 3.8E+02 0.0082 33.4 13.5 125 465-607 822-969 (972)
462 cd00609 AAT_like Aspartate ami 38.5 33 0.00071 35.6 3.8 137 450-603 196-349 (350)
463 PRK09064 5-aminolevulinate syn 38.5 42 0.0009 36.6 4.7 146 449-609 239-398 (407)
464 KOG0634|consensus 37.8 6.5E+02 0.014 28.5 15.7 42 272-313 202-252 (472)
465 PLN02271 serine hydroxymethylt 37.7 2.8E+02 0.006 32.6 11.1 155 449-607 352-539 (586)
466 PRK08354 putative aminotransfe 37.1 3E+02 0.0064 28.8 10.8 46 558-606 263-310 (311)
467 PRK00615 glutamate-1-semialdeh 36.9 4.1E+02 0.0089 29.7 12.3 126 465-609 277-429 (433)
468 PLN02994 1-aminocyclopropane-1 36.8 95 0.0021 29.7 6.3 23 103-126 103-128 (153)
469 PRK06209 glutamate-1-semialdeh 36.6 2.5E+02 0.0055 31.2 10.6 128 465-609 259-406 (431)
470 KOG1401|consensus 35.4 2.2E+02 0.0048 31.8 9.4 126 465-604 283-426 (433)
471 PRK06939 2-amino-3-ketobutyrat 34.6 65 0.0014 34.5 5.4 148 449-610 235-395 (397)
472 PF00464 SHMT: Serine hydroxym 33.1 1.1E+02 0.0023 34.2 6.8 138 449-602 223-399 (399)
473 PRK05958 8-amino-7-oxononanoat 32.8 70 0.0015 34.0 5.3 139 452-605 233-384 (385)
474 PRK07682 hypothetical protein; 32.7 31 0.00068 37.1 2.6 142 451-608 219-376 (378)
475 PRK11706 TDP-4-oxo-6-deoxy-D-g 32.6 4.8E+02 0.01 28.2 11.8 85 522-606 249-374 (375)
476 PRK05968 hypothetical protein; 32.6 69 0.0015 35.1 5.3 81 448-545 198-281 (389)
477 PF08704 GCD14: tRNA methyltra 32.4 1E+02 0.0023 32.0 6.2 58 136-194 32-90 (247)
478 KOG1549|consensus 31.1 2.9E+02 0.0063 31.1 9.6 158 449-614 234-424 (428)
479 TIGR01822 2am3keto_CoA 2-amino 29.8 84 0.0018 33.8 5.3 145 449-608 231-389 (393)
480 PRK08297 L-lysine aminotransfe 29.5 5.2E+02 0.011 28.9 11.6 111 494-607 321-440 (443)
481 PRK07036 hypothetical protein; 29.3 7.5E+02 0.016 27.9 12.9 128 465-607 299-451 (466)
482 PRK06855 aminotransferase; Val 27.4 5.1E+02 0.011 28.6 11.1 103 500-607 282-428 (433)
483 COG1448 TyrB Aspartate/tyrosin 25.8 2.3E+02 0.0051 31.4 7.6 98 495-603 280-393 (396)
484 TIGR01821 5aminolev_synth 5-am 24.8 1.1E+02 0.0023 33.3 5.0 146 449-610 238-398 (402)
485 PRK08776 cystathionine gamma-s 23.9 96 0.0021 34.3 4.4 78 449-544 197-278 (405)
486 PRK11658 UDP-4-amino-4-deoxy-L 23.1 8E+02 0.017 26.5 11.4 86 521-606 252-377 (379)
487 PRK05764 aspartate aminotransf 22.8 86 0.0019 33.8 3.8 144 450-609 230-392 (393)
488 PLN02483 serine palmitoyltrans 22.6 1.6E+02 0.0035 33.4 6.0 147 450-609 303-467 (489)
489 PRK07986 adenosylmethionine--8 21.9 8.3E+02 0.018 27.2 11.4 125 466-607 284-422 (428)
490 cd06450 DOPA_deC_like DOPA dec 21.8 51 0.0011 34.6 1.7 119 450-604 208-344 (345)
491 PRK06108 aspartate aminotransf 21.3 1.8E+02 0.0038 31.1 5.8 138 452-606 226-380 (382)
492 TIGR01825 gly_Cac_T_rel pyrido 21.0 1.3E+02 0.0028 32.2 4.7 144 450-609 225-382 (385)
493 PRK13580 serine hydroxymethylt 20.4 2.2E+02 0.0047 32.8 6.4 146 448-608 276-445 (493)
494 PRK07179 hypothetical protein; 20.0 1.7E+02 0.0036 31.9 5.3 146 450-610 243-400 (407)
No 1
>KOG2790|consensus
Probab=100.00 E-value=1.9e-90 Score=692.57 Aligned_cols=352 Identities=63% Similarity=1.009 Sum_probs=320.1
Q ss_pred cCCCCCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcc
Q psy8733 46 SSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGT 125 (621)
Q Consensus 46 ~~~~~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT 125 (621)
...++++.+|.|||+.+|.+|+.++++.+.||++.|+|++||||||++|..++++++..+|+|+++|++|+|+|+|||||
T Consensus 2 ~~a~~~vvnFaaGPAklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~~vlf~QGGGt 81 (370)
T KOG2790|consen 2 MDAPERVVNFAAGPAKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNYKVLFLQGGGT 81 (370)
T ss_pred CCCccceeecCCCcccCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCc
Confidence 34447899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhh--CCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccc
Q psy8733 126 GMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLI--GRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVS 203 (621)
Q Consensus 126 ~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~--~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~ 203 (621)
+ ||++++.||. ..|+.++|++||.||.++.++|+++|.++.+.+..+
T Consensus 82 ~-------------------------------qFaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k 130 (370)
T KOG2790|consen 82 G-------------------------------QFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKKYGTPNIVIPKLK 130 (370)
T ss_pred c-------------------------------cccccchhhhccccCCccceEEeccccHHHHHHHHhhCCceEEecccc
Confidence 9 8888999988 466789999999999999999999998766554210
Q ss_pred cccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccc
Q psy8733 204 KYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNE 283 (621)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnE 283 (621)
+-.|+.+|+.+.|..++|.+||++|.||
T Consensus 131 ----------------------------------------------------~y~ygkvPd~~~w~~~~da~yvyyCaNE 158 (370)
T KOG2790|consen 131 ----------------------------------------------------SYTYGKVPDPSTWELNPDASYVYYCANE 158 (370)
T ss_pred ----------------------------------------------------ccccCcCCChhhcccCCCccEEEEecCc
Confidence 1126689999999999999999999999
Q ss_pred ccccccccccc--ccCCCcEEEecccccCCCcccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeecccc
Q psy8733 284 TVDGVEFNYIP--DSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKIN 361 (621)
Q Consensus 284 T~tGv~~p~i~--~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~ 361 (621)
|++|++++.+| ..+|+++|+|++|.|.++|+|+++
T Consensus 159 TVHGVEf~~~P~~~~~~~vlVaDmSSnflSrpvDvsk------------------------------------------- 195 (370)
T KOG2790|consen 159 TVHGVEFDFIPVNDPKGAVLVADMSSNFLSRPVDVSK------------------------------------------- 195 (370)
T ss_pred eeeceecCCCCCCCCCCceEEEecccchhcCCccchh-------------------------------------------
Confidence 99999999877 678999999999999999988754
Q ss_pred ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccc
Q psy8733 362 ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHV 441 (621)
Q Consensus 362 ~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~ 441 (621)
T Consensus 196 -------------------------------------------------------------------------------- 195 (370)
T KOG2790|consen 196 -------------------------------------------------------------------------------- 195 (370)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCchhhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCC
Q psy8733 442 QTGSAFFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGG 521 (621)
Q Consensus 442 ~~~~~~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg 521 (621)
|++||||+|||+||||+|++|||+|+|+++.+++|++++|+.+++|||+|||||||+||++|+||+||+++||
T Consensus 196 -------~gvi~aGAQKN~G~aG~Tvvivr~dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GG 268 (370)
T KOG2790|consen 196 -------FGVIFAGAQKNVGPAGVTVVIVRKDLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGG 268 (370)
T ss_pred -------cceEEeccccccCccccEEEEEehhhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhccc
Confidence 4455666677777777777777777777777778999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCcccccCCC-------------CCcccHHHHHHHHHccCccccCCCCCCccceeecc
Q psy8733 522 LAKMEQNSLQKSVLLYQEIDNSDKFYECPVQA-------------GFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYN 588 (621)
Q Consensus 522 ~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~-------------~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~ 588 (621)
+++||+.|++||++||+.||+|.+||+|||++ .++++++|+++|.+++|+.+|||||+||||+|+||
T Consensus 269 l~a~e~~n~~KskllYd~iD~s~gfy~cpVe~~~RS~MNV~Fri~~d~Le~eFLkeA~~~~mv~LKGhRSVGGiRASlYN 348 (370)
T KOG2790|consen 269 LAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEPSVRSRMNVPFRIEKDELEAEFLKEAAKEHMVQLKGHRSVGGIRASLYN 348 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEcccchhhhhhcccceeecchHHHHHHHHHHHHhhhhccccccccccchhhhhc
Confidence 99999999999999999999999999999999 24599999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHcC
Q psy8733 589 AITVDEAVILVKFMKEFRHKHS 610 (621)
Q Consensus 589 a~~~~~~~~l~~~~~~~~~~~~ 610 (621)
|++.|++++|++||++|.++|.
T Consensus 349 Aisv~~~q~L~~~m~~F~k~h~ 370 (370)
T KOG2790|consen 349 AISVEEVQKLAAFMKEFQKKHA 370 (370)
T ss_pred cccHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999984
No 2
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=100.00 E-value=6.9e-81 Score=665.21 Aligned_cols=359 Identities=38% Similarity=0.695 Sum_probs=329.7
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
..|||+|||+.+|++|++++++.+.+|++.|+|++|++|||++|.++++++++.|++||++|++|+|+|++||||+
T Consensus 4 ~~~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~---- 79 (364)
T PRK12462 4 NQLNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSL---- 79 (364)
T ss_pred ccceecCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHH----
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEE-EEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 131 VAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKAD-YVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 131 ~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~-~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
||||+++||+.+|++++ |+++|.||+||.++|+++|.++++...
T Consensus 80 ---------------------------~~ea~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g~v~~~~~~-------- 124 (364)
T PRK12462 80 ---------------------------QFSMIPMNFSRPGAAAPEYVTTGYWSRKAIGEASRVAAMRVVWDG-------- 124 (364)
T ss_pred ---------------------------HHHHHHHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcCCceEecCc--------
Confidence 89999999998888655 999999999999999999854333210
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
| ..+++.+|+.+.|++++++++|++|||||++|++
T Consensus 125 -------------------------~--------------------~~~~~~~p~~~~~~~~~d~~~v~~t~NETstGv~ 159 (364)
T PRK12462 125 -------------------------A--------------------ASGYRTLPSLAELDWDARAPFRHYVSNETVEGLQ 159 (364)
T ss_pred -------------------------C--------------------CCCCCcCCCHHHhccCCCCcEEEEccCCCCceEe
Confidence 0 1224567777778888899999999999999999
Q ss_pred cccccccCCCcEEEecccccCCCcccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccccCCCccC
Q psy8733 290 FNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYN 369 (621)
Q Consensus 290 ~p~i~~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~ 369 (621)
+|.+++.+++++||||+|++|++|+|+++||++++|+||||||||++++++|++++++..+..|.|+||..+.++++++|
T Consensus 160 ~~~~~~~~~~llvvD~sS~~~s~pid~~~~dvi~agsQKnlgP~Gltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~n 239 (364)
T PRK12462 160 FPDAAGLPDSPLIADMSSDFMSRPFDVEAYGMVYAHAQKNLGPAGVTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYN 239 (364)
T ss_pred cCcccccCCCeEEEEcCchhhCCCCChHHccEEEeeccccCCCCceEEEEECHHHHhhccccCCchhhHHHHHhcCCCCC
Confidence 98777767899999999999999999999999999999999999999999999999998777889999999888889999
Q ss_pred CchHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccccCCchhh
Q psy8733 370 TPPTFVVHVIQRVFAWIKRQ-GGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQTGSAFF 448 (621)
Q Consensus 370 TP~v~~I~aL~~aL~~i~~~-gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~~~~~~~~ 448 (621)
|||++.||+++++|+||+++ ||++++++|++++++.||+.|++++|||.++++++.||+||||
T Consensus 240 TPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~---------------- 303 (364)
T PRK12462 240 TPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMNVA---------------- 303 (364)
T ss_pred CchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCcceEE----------------
Confidence 99999999999999999998 8999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
++. .
T Consensus 304 ---------------------------------------f~~-~------------------------------------ 307 (364)
T PRK12462 304 ---------------------------------------FRF-R------------------------------------ 307 (364)
T ss_pred ---------------------------------------EEc-C------------------------------------
Confidence 332 1
Q ss_pred HHHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHHHHHH
Q psy8733 529 SLQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~ 608 (621)
+.+++++|+++|+++||+.+||||++||||+|+|||+|.|++++|++||++|+++
T Consensus 308 -------------------------~~~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 308 -------------------------QPRLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFLKDFAIR 362 (364)
T ss_pred -------------------------CHHHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 0248899999999999999999999999999999999999999999999999999
Q ss_pred cC
Q psy8733 609 HS 610 (621)
Q Consensus 609 ~~ 610 (621)
|.
T Consensus 363 ~~ 364 (364)
T PRK12462 363 HA 364 (364)
T ss_pred cC
Confidence 84
No 3
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-80 Score=641.97 Aligned_cols=347 Identities=49% Similarity=0.790 Sum_probs=301.2
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
+++|+|++||+.+|++|++++++.+.+|++.|+||||+||||++|.++++++++.+|+||++|++|+|+|+|||+|+
T Consensus 4 ~~~~nFsaGPa~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~--- 80 (365)
T COG1932 4 PRVYNFSAGPAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATG--- 80 (365)
T ss_pred CCCCCCCCCcccCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHH---
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
||+|+++||+..+ ...|+.+|+|++.+.++|++++....+....
T Consensus 81 ----------------------------qf~~~p~nLl~~~-~~~yv~~g~Ws~~a~~eA~~~~~~~~~~~~~------- 124 (365)
T COG1932 81 ----------------------------QFAMAPMNLLGKR-GTDYVDTGAWSEFAIKEAKKVGKQPKLIDAR------- 124 (365)
T ss_pred ----------------------------HHHHHHHhhhccc-CceeEeeeehhHhHHHHHHHhcccccccccc-------
Confidence 9999999999642 2239999999999999999998531111100
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
....+|+.+|+.+.|.++++..|||+|+|||++|+.
T Consensus 125 --------------------------------------------~~~~~~~~iP~~~~~~~~~~~ayv~~~~NeTi~Gv~ 160 (365)
T COG1932 125 --------------------------------------------IEEAGYGSIPDLSKWDFSDNDAYVHFCWNETISGVE 160 (365)
T ss_pred --------------------------------------------eeccCccCCCChhhcccCCCccEEEEecCCcccceE
Confidence 002458899999999888888999999999999999
Q ss_pred ccccccc-CCCcEEEecccccCCCcccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccccCCCcc
Q psy8733 290 FNYIPDS-QGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVY 368 (621)
Q Consensus 290 ~p~i~~~-~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~ 368 (621)
.|..+.. .+.++|+|++|+++++|||++++|
T Consensus 161 v~~~p~~~~~~~~v~D~SS~ilsr~iDvsk~d------------------------------------------------ 192 (365)
T COG1932 161 VPELPDIGSDGLLVADASSAILSRPIDVSKYD------------------------------------------------ 192 (365)
T ss_pred ccCCCCCCCCceEEEecccHHhcCCCChhHcc------------------------------------------------
Confidence 9975542 238999999999999988876544
Q ss_pred CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccccCCchhh
Q psy8733 369 NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQTGSAFF 448 (621)
Q Consensus 369 ~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~~~~~~~~ 448 (621)
T Consensus 193 -------------------------------------------------------------------------------- 192 (365)
T COG1932 193 -------------------------------------------------------------------------------- 192 (365)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCC-CCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPI-TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~-~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
+||||+|||+||+|+|++||||++|+++... +|++++|++++.|+|||||||||+||++++||+|++++||+++|++
T Consensus 193 --viyagaQKnlGpaGltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~ 270 (365)
T COG1932 193 --VIYAGAQKNLGPAGLTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEA 270 (365)
T ss_pred --eEEEehhhccCccceEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455555555555555555555555555444 6788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCcccccCCCC-------------CcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHH
Q psy8733 528 NSLQKSVLLYQEIDNSDKFYECPVQAG-------------FPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDE 594 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~~~~~~~v~~~-------------~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~ 594 (621)
||++||++||++||+| +||+++|+++ .++++.|+++|+++|++.++|||++|++|+++|||++.|+
T Consensus 271 rn~~ka~~LY~~id~s-~fy~~~v~~~~RS~mnV~f~~~~~~ld~~fv~eae~~gl~~lkGhr~vgGmRasiynA~~~e~ 349 (365)
T COG1932 271 RNQAKAQLLYDWIDKS-DFYRNLVAKANRSRMNVTFTLVDAELDKGFVAEAEAAGLIYLKGHRSVGGLRASIYNAVPLED 349 (365)
T ss_pred HHHHHHHHHHHHHHhC-CccccccchhhccceeEEEEcCcHHHHHHHHHHHHHcCCceeccccCCCceeeeeecCCCHHH
Confidence 9999999999999999 6999999882 2488999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC
Q psy8733 595 AVILVKFMKEFRHKHS 610 (621)
Q Consensus 595 ~~~l~~~~~~~~~~~~ 610 (621)
+++|++||++|.++|+
T Consensus 350 veaL~~fm~~f~~~~~ 365 (365)
T COG1932 350 VEALTDFMDWFEETYK 365 (365)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999999874
No 4
>PLN02452 phosphoserine transaminase
Probab=100.00 E-value=3.4e-74 Score=617.07 Aligned_cols=360 Identities=52% Similarity=0.873 Sum_probs=323.3
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
+++|||+|||+.+|++|++++++++.+|++.|+|++|++||+++|.+++++++++|++|+++|++|+|+|+|||||+
T Consensus 6 ~~~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~--- 82 (365)
T PLN02452 6 GRVFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGAST--- 82 (365)
T ss_pred CceEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHH---
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
||||+++||+.+|++++|+++|.||+||.++|+++|.++++...
T Consensus 83 ----------------------------~~ea~~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~-------- 126 (365)
T PLN02452 83 ----------------------------QFAAIPLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASG-------- 126 (365)
T ss_pred ----------------------------HHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEec--------
Confidence 88899999999999999999999999999999999975544321
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
+| .++..+|+.++++.++++++|++|||||++|++
T Consensus 127 ------------------------~~---------------------~~~~~~~~~~~~~~~~~~~~v~~~hnETstGv~ 161 (365)
T PLN02452 127 ------------------------KD---------------------EKYTKIPSVSEWELTPDAKFVHICANETIHGVE 161 (365)
T ss_pred ------------------------CC---------------------CCCCCCCChHHcCCCCCCcEEEECCCCCCCcEe
Confidence 01 123345666667778899999999999999997
Q ss_pred cccccccCCCcEEEecccccCCCcccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccccCCCccC
Q psy8733 290 FNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYN 369 (621)
Q Consensus 290 ~p~i~~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~ 369 (621)
.+.+++..++++||||+|++|++|||+++||++++|+|||+||+|+|++++|+++++++.+..|.|++|..+.++.++++
T Consensus 162 ~~~~~~i~~~~lvVDa~Ss~g~~pidv~~~~v~~~saqK~lGP~Gl~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~ 241 (365)
T PLN02452 162 FKDYPDVGNVPLVADMSSNFLSKPVDVSKYGVIYAGAQKNVGPSGVTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYN 241 (365)
T ss_pred cCcccccCCCeEEEECCccccCcccCHHHcCEEEEecccccCCCCeEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccC
Confidence 33345444589999999999999999999999999999999999999999999999998777788999998778889999
Q ss_pred CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccccCCchhhH
Q psy8733 370 TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQTGSAFFF 449 (621)
Q Consensus 370 TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~~~~~~~~~ 449 (621)
|||+++||+++++|+||.++||++++++|+++++++||++|++++|||..+.+++.||+|||+
T Consensus 242 TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vs----------------- 304 (365)
T PLN02452 242 TPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVP----------------- 304 (365)
T ss_pred ChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEE-----------------
Confidence 999999999999999999988999999999999999999999998897777777789999987
Q ss_pred HHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHH
Q psy8733 450 GVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNS 529 (621)
Q Consensus 450 ~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~ 529 (621)
+.. .
T Consensus 305 --------------------------------------F~~-~------------------------------------- 308 (365)
T PLN02452 305 --------------------------------------FTL-G------------------------------------- 308 (365)
T ss_pred --------------------------------------EEc-C-------------------------------------
Confidence 211 0
Q ss_pred HHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHHHHHHc
Q psy8733 530 LQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609 (621)
Q Consensus 530 ~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~ 609 (621)
+.+++++|+++|+++||+.++|||++|+||||+|||++.|++++|++||++|+++|
T Consensus 309 ------------------------~~~~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~m~~f~~~~ 364 (365)
T PLN02452 309 ------------------------GSELEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 364 (365)
T ss_pred ------------------------CchhHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHHHHHHHHHhc
Confidence 02367889999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy8733 610 S 610 (621)
Q Consensus 610 ~ 610 (621)
.
T Consensus 365 ~ 365 (365)
T PLN02452 365 A 365 (365)
T ss_pred C
Confidence 4
No 5
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=100.00 E-value=2.8e-58 Score=493.81 Aligned_cols=358 Identities=55% Similarity=0.908 Sum_probs=303.0
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
+.++|+|||+++|++|+++|..++.+|.+.|+|.++++||+++|.++++++|++|+++||+|++|+|+|++|+||+
T Consensus 3 ~~~l~~pGP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~---- 78 (360)
T PRK05355 3 RVYNFSAGPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASL---- 78 (360)
T ss_pred ceeeccCCCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchH----
Confidence 4689999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred HHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCC
Q psy8733 131 VAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPD 210 (621)
Q Consensus 131 ~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~ 210 (621)
+||+++.|++.+|++++++++|.||+||.++|+++|.+.++ ..
T Consensus 79 ---------------------------~~Ea~~~nl~~~g~~~l~i~~G~fg~r~~~~a~~~g~~~~~-~~--------- 121 (360)
T PRK05355 79 ---------------------------QFAMVPMNLLGGGKKADYVDTGSWSKKAIKEAKKYGEVNVA-AS--------- 121 (360)
T ss_pred ---------------------------HHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCceEE-ec---------
Confidence 66678899999999999999999999999999999965222 10
Q ss_pred CCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccc
Q psy8733 211 QSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290 (621)
Q Consensus 211 ~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~ 290 (621)
...|+.. ..++.+++.+++++++|++|||||+||+++
T Consensus 122 ---------------------~~~~g~~----------------------~~~~~~~~~l~~~~~~V~~th~eTstGv~~ 158 (360)
T PRK05355 122 ---------------------SEDDGFT----------------------YIPPLDEWQLSDDAAYVHYTSNETIDGTEF 158 (360)
T ss_pred ---------------------ccccCCC----------------------CCCChhhccCCCCCCEEEEccCCCcceEec
Confidence 0002221 122233335667899999999999999999
Q ss_pred ccccccCCCcEEEecccccCCCcccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccccCCCccCC
Q psy8733 291 NYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNT 370 (621)
Q Consensus 291 p~i~~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~T 370 (621)
|-+++-+|++++|||+|++|+.|+|+++||++++|+||++||+|+|++++|+++++++.+..+.|+++....+...+++|
T Consensus 159 ~~i~~i~g~l~vVDavss~g~~~idv~~~d~~~~ssqK~lgP~Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~T 238 (360)
T PRK05355 159 HELPDTGDVPLVADMSSDILSRPIDVSKFGLIYAGAQKNIGPAGLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNT 238 (360)
T ss_pred CcccccCCCcEEEEcCccccCccCCHHHccEEEEeccccccCCceEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCC
Confidence 43443389999999999999999999999999999999999999999999999999987645668887765556678899
Q ss_pred chHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccccCCchhhHH
Q psy8733 371 PPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQTGSAFFFG 450 (621)
Q Consensus 371 P~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~~~~~~~~~~ 450 (621)
||+.++++|+++|+|+.++||++++++|+++++++++++|++++ ++....++..||+++++
T Consensus 239 p~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~-~~~~~~~~~~rs~~v~s------------------ 299 (360)
T PRK05355 239 PPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSD-FYRNPVAPEDRSRMNVP------------------ 299 (360)
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCC-CcccCCChhhcCCcEEE------------------
Confidence 99999999999999999997899999999999999999999997 55433344568876554
Q ss_pred HHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy8733 451 VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSL 530 (621)
Q Consensus 451 ~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~ 530 (621)
+.. |+
T Consensus 300 -------------------------------------f~~----------~~---------------------------- 304 (360)
T PRK05355 300 -------------------------------------FTL----------AD---------------------------- 304 (360)
T ss_pred -------------------------------------EEc----------CC----------------------------
Confidence 111 00
Q ss_pred HHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHHHHHHcC
Q psy8733 531 QKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKHS 610 (621)
Q Consensus 531 ~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~~ 610 (621)
...+.+|++.+.++||+...||+..|.||+|+++..|.||+++|+++|+++..+|+
T Consensus 305 ------------------------~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~~~ 360 (360)
T PRK05355 305 ------------------------EELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFERRHG 360 (360)
T ss_pred ------------------------hHHHHHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 01224577788899999988887789999999999999999999999999999874
No 6
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=100.00 E-value=1.6e-56 Score=478.36 Aligned_cols=349 Identities=55% Similarity=0.925 Sum_probs=300.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhc
Q psy8733 60 AKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSS 139 (621)
Q Consensus 60 s~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~ 139 (621)
+++|++|++++.+++.+|.+.|+|.++++||+++|.++++++|++|+++|++|++|+|+|++||||+
T Consensus 1 ~~~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~------------- 67 (349)
T TIGR01364 1 AALPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATG------------- 67 (349)
T ss_pred CCCCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchH-------------
Confidence 5799999999999999999999999999999999999999999999999999888899999999999
Q ss_pred cCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCC
Q psy8733 140 MNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPE 219 (621)
Q Consensus 140 ~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (621)
+||+++.|++.+|++++++++|.||+||.++|+++|.+.++...
T Consensus 68 ------------------a~ea~~~nl~~~~~~~l~i~~G~fg~r~~~~a~~~g~~~~~~~~------------------ 111 (349)
T TIGR01364 68 ------------------QFAAVPLNLLAEGKVADYIVTGAWSKKAAKEAKKYGVVNVVASG------------------ 111 (349)
T ss_pred ------------------HHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCcEEEecc------------------
Confidence 55567888888899999999999999999999999983322100
Q ss_pred ccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccccccccccCCC
Q psy8733 220 ASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNYIPDSQGI 299 (621)
Q Consensus 220 v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~i~~~~g~ 299 (621)
-.++|++.+++++ +.+++++++|++|||||+||+++|.+++.+++
T Consensus 112 -----------~~~~~~~~~~~~~------------------------~~~~~~~~~v~~th~ETstGv~~~~l~~~~~~ 156 (349)
T TIGR01364 112 -----------KEGNYTKIPDPST------------------------WEISEDAAYVHYCANETIHGVEFRELPDVKNA 156 (349)
T ss_pred -----------ccCCCCCCCCHHh------------------------cCCCCCCCEEEEcCCCCcccEecceecccCCC
Confidence 0245666655433 23456899999999999999999988877899
Q ss_pred cEEEecccccCCCcccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHH
Q psy8733 300 PLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVI 379 (621)
Q Consensus 300 llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL 379 (621)
+++|||+|++|+.|+|+++||++++|+||++||+|+|++++|+++++++.+..|.+++|....++...++|||+.+|++|
T Consensus 157 l~iVDavss~g~~~id~~~~d~~~~ssqK~lgP~Glg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al 236 (349)
T TIGR01364 157 PLVADMSSNILSRPIDVSKFGLIYAGAQKNIGPAGLTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVS 236 (349)
T ss_pred eEEEEccccccCccCCHHHccEEEEecccccCCCceEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988777777777544445677899999999999
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccccCCchhhHHHHHhhcccc
Q psy8733 380 QRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQTGSAFFFGVIIAGAQKN 459 (621)
Q Consensus 380 ~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~~~~~~~~~~~~~a~~qk~ 459 (621)
.+||+|+.++||++++++|+++++++++++|++++|++....+++.||+++++
T Consensus 237 ~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~s--------------------------- 289 (349)
T TIGR01364 237 GLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVV--------------------------- 289 (349)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEE---------------------------
Confidence 99999999997899999999999999999999998877665455568876543
Q ss_pred cccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q psy8733 460 IGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 539 (621)
Q Consensus 460 ~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ka~~lY~~ 539 (621)
+.. |+
T Consensus 290 ----------------------------f~~----------~~------------------------------------- 294 (349)
T TIGR01364 290 ----------------------------FTL----------GN------------------------------------- 294 (349)
T ss_pred ----------------------------Eec----------CC-------------------------------------
Confidence 111 00
Q ss_pred HhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHHHHHHc
Q psy8733 540 IDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609 (621)
Q Consensus 540 id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~ 609 (621)
..++.+|++.+.++||....||+..|+||+|+++..+.||++.|+++|+++.++|
T Consensus 295 ---------------~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~~~~~~~ 349 (349)
T TIGR01364 295 ---------------EELEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFQKKH 349 (349)
T ss_pred ---------------hhHhHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHHHHHHHHHHHHHhC
Confidence 0123567788899999999999888999999999999999999999999999987
No 7
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=100.00 E-value=5e-55 Score=467.23 Aligned_cols=354 Identities=58% Similarity=0.989 Sum_probs=296.4
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHH
Q psy8733 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVA 132 (621)
Q Consensus 53 ~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~a 132 (621)
++|+|||+++|++|+++|.+++.++.+.|++.++.+||+++|.++++++|+++++|||++++++|+|++||||+
T Consensus 1 ~~~~pGp~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~------ 74 (355)
T cd00611 1 INFSAGPAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATG------ 74 (355)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchH------
Confidence 57999999999999999999998888899999999999999999999999999999999888899999999999
Q ss_pred HHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCC
Q psy8733 133 MNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQS 212 (621)
Q Consensus 133 lNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~ 212 (621)
++++++.||+.++++.+++++|.|+++|.++++++|....+++..
T Consensus 75 -------------------------a~~~~~~~l~~~~~~~~~i~~g~~~~~~~~~a~~~g~~~~~~~~~---------- 119 (355)
T cd00611 75 -------------------------QFAAVPLNLLGDKGTADYVVTGAWSAKAAKEAKRYGGVVVIVAAK---------- 119 (355)
T ss_pred -------------------------HHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHhcCCCcEEEecc----------
Confidence 344466777766788999999999999999999999643332210
Q ss_pred CCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc
Q psy8733 213 TWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY 292 (621)
Q Consensus 213 ~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~ 292 (621)
-.+.|+ .+++.....+++++++|+++|+||+||+.++.
T Consensus 120 ------------------~~g~~~------------------------~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~~ 157 (355)
T cd00611 120 ------------------EEGKYT------------------------KIPDVETWDLAPDAAYVHYCSNETIHGVEFDE 157 (355)
T ss_pred ------------------cccCCC------------------------CCCCHhhcCCCCCCCEEEEeCCcccccEEcce
Confidence 001121 22222233467899999999999999999887
Q ss_pred ccccCCCcEEEecccccCCCcccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCch
Q psy8733 293 IPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPP 372 (621)
Q Consensus 293 i~~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~ 372 (621)
+++.+|++++|||+|++|+.|+|++++|++++|+||++||+|+|++++|+++++++.+..|.++++....+....++|||
T Consensus 158 i~~~~g~~~~VDa~qs~g~~~idv~~~~~~~ss~~K~lGP~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn 237 (355)
T cd00611 158 VPDTGGVPLVADMSSNILSRPIDVSKFGVIYAGAQKNLGPAGVTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPP 237 (355)
T ss_pred ecccCCCeEEEEccccccCCCCCHHHhCEEEeecccccCCCceEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCCh
Confidence 88789999999999999999999999999889999999999999999999999998877777766654444555689999
Q ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccccCCchhhHHHH
Q psy8733 373 TFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQTGSAFFFGVI 452 (621)
Q Consensus 373 v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~~~~~~~~~~~~ 452 (621)
+.+|++|.+||+|+.++||++++++|+++++++++++|++++|++..+.++..||+.+++
T Consensus 238 ~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvs-------------------- 297 (355)
T cd00611 238 TFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVP-------------------- 297 (355)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEE--------------------
Confidence 999999999999999997899999999999999999999998776455455568765443
Q ss_pred HhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy8733 453 IAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQK 532 (621)
Q Consensus 453 ~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~k 532 (621)
+.. ++
T Consensus 298 -----------------------------------f~~--~~-------------------------------------- 302 (355)
T cd00611 298 -----------------------------------FRL--GK-------------------------------------- 302 (355)
T ss_pred -----------------------------------EEc--CC--------------------------------------
Confidence 111 00
Q ss_pred HHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHHHH
Q psy8733 533 SVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFR 606 (621)
Q Consensus 533 a~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~ 606 (621)
..++.++++.+.++|++...||+..|++|+|+++..|.||+++|+++|++++
T Consensus 303 ----------------------~~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~~ 354 (355)
T cd00611 303 ----------------------EELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEFQ 354 (355)
T ss_pred ----------------------hhhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHHh
Confidence 0123567778889999999999988999999999999999999999999975
No 8
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-51 Score=435.71 Aligned_cols=345 Identities=22% Similarity=0.312 Sum_probs=297.0
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
.++++|||+++|++|+++|.+.+ .+|||++|.+++.+++++|+++|++++ +++++++|+||.+
T Consensus 6 ~~Ll~PGP~~v~~~V~~am~~~~------------~~h~s~~F~~~~~~~~~~L~~v~~t~~-~~~~ll~gsGt~a---- 68 (383)
T COG0075 6 RLLLTPGPVPVPPRVLLAMARPM------------VGHRSPDFVGIMKEVLEKLRKVFGTEN-GDVVLLSGSGTLA---- 68 (383)
T ss_pred ceeeeCCCCCCCHHHHHHhcCCC------------CCCCCHHHHHHHHHHHHHHHHHhcCCC-CcEEEEcCCcHHH----
Confidence 58999999999999999999987 789999999999999999999999984 4789999999994
Q ss_pred HHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCC
Q psy8733 132 AMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQ 211 (621)
Q Consensus 132 alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~ 211 (621)
+|+++.|+++||||++++.+|.||+||.++|+++|...
T Consensus 69 ---------------------------mEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v--------------- 106 (383)
T COG0075 69 ---------------------------MEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEV--------------- 106 (383)
T ss_pred ---------------------------HHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCce---------------
Confidence 55578899999999999999999999999999999742
Q ss_pred CCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccccc
Q psy8733 212 STWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291 (621)
Q Consensus 212 ~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p 291 (621)
++++.+|+.++++|++ .+.+..+++.++|+++||||+||+++|
T Consensus 107 -----------------~~~~~~wg~~v~p~~v--------------------~~~L~~~~~~~~V~~vH~ETSTGvlnp 149 (383)
T COG0075 107 -----------------VVLEVEWGEAVDPEEV--------------------EEALDKDPDIKAVAVVHNETSTGVLNP 149 (383)
T ss_pred -----------------EEEeCCCCCCCCHHHH--------------------HHHHhcCCCccEEEEEeccCcccccCc
Confidence 3467789999999986 234456788999999999999999999
Q ss_pred c--c---cccCCCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEchhHHhhhCCC-CC-ceeecccc
Q psy8733 292 Y--I---PDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVREDLLEYALPI-TP-TVFHFKIN 361 (621)
Q Consensus 292 ~--i---~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~~ll~~~~~~-~P-~~ld~~~~ 361 (621)
+ | ++++|+++|||++||+|+.|+++++|| ++++|+||||+ |||+|++.+|+++++++... .| .|+|+..+
T Consensus 150 l~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~ 229 (383)
T COG0075 150 LKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKW 229 (383)
T ss_pred HHHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHH
Confidence 7 4 468999999999999999999999998 99999999996 99999999999999998764 34 58887653
Q ss_pred ---cc-CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccc
Q psy8733 362 ---AD-NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFT 437 (621)
Q Consensus 362 ---~~-~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t 437 (621)
.+ ++.+++|||+..+|+|.+||+.++++ |++++++||+++++++++++.++| |.++. +++.+||++ |
T Consensus 230 ~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~E-Gle~r~~RH~~~~~a~r~~~~alG-l~~~~-~~~~~s~tv------t 300 (383)
T COG0075 230 LKYMEKKGSTPYTPPVNLIYALREALDLILEE-GLEARIARHRRLAEALRAGLEALG-LELFA-DPERRSPTV------T 300 (383)
T ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHcC-Ccccc-CcccCCCce------E
Confidence 22 36888999999999999999999999 799999999999999999999996 88887 888999874 5
Q ss_pred cccccCCchhhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHH
Q psy8733 438 FSHVQTGSAFFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIK 517 (621)
Q Consensus 438 ~~~~~~~~~~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~ 517 (621)
++++|++...+
T Consensus 301 a~~~P~g~~~~--------------------------------------------------------------------- 311 (383)
T COG0075 301 AIKVPEGVDDK--------------------------------------------------------------------- 311 (383)
T ss_pred EEECCCCCCcH---------------------------------------------------------------------
Confidence 55555542211
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCCCc--cceeeccCCCHHHH
Q psy8733 518 RQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLVGG--IRASIYNAITVDEA 595 (621)
Q Consensus 518 ~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~--~r~~~~~a~~~~~~ 595 (621)
+.+....++.|+....|++...+ |||+..=-.+.+++
T Consensus 312 -----------------------------------------~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv 350 (383)
T COG0075 312 -----------------------------------------KVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDV 350 (383)
T ss_pred -----------------------------------------HHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHH
Confidence 11223445559999999999553 99999999999999
Q ss_pred HHHHHHHHHHHHHcCC
Q psy8733 596 VILVKFMKEFRHKHSR 611 (621)
Q Consensus 596 ~~l~~~~~~~~~~~~~ 611 (621)
..++..|..-..+.+.
T Consensus 351 ~~~l~ale~~L~~~g~ 366 (383)
T COG0075 351 LAALAALEAALRELGV 366 (383)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999988877654
No 9
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=100.00 E-value=5.9e-51 Score=438.28 Aligned_cols=348 Identities=17% Similarity=0.194 Sum_probs=276.9
Q ss_pred eeccCCCCCCCHHH-HHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 53 INFGAGPAKLPREV-LEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 53 ~lf~aGPs~~P~~V-lea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
-.|+|||+.+.+.+ .+++.+ ++++++|||++|.+++++++++|+++|++|++|+|+|++||||+
T Consensus 5 ~~f~~gp~~~~~~~~~~~~~~----------~~~~~~HRs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~----- 69 (374)
T TIGR01365 5 PCFSSGPCAKRPGWSIEELKN----------APLGRSHRSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTG----- 69 (374)
T ss_pred CCcCCCccCCCchhhHHHHhh----------hhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHH-----
Confidence 47999999999995 555554 35679999999999999999999999999888999999999999
Q ss_pred HHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhC-CCCcEEEEEcChHHHHHH-HHHHHhCCceeeecccccccccC
Q psy8733 132 AMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIG-RTGKADYVVTGSWSKKAA-AEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 132 alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~-~g~~~~~v~tG~~~~~~~-~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
+|||++.||++ +|++++ ++|.||+||. +.|+++|...
T Consensus 70 --------------------------a~Eaa~~nl~~~~g~~vL--v~g~FG~r~~~eia~~~g~~~------------- 108 (374)
T TIGR01365 70 --------------------------AVEMALWSMLGCRGVDVL--AWESFGKGWVTDVTKQLKLPD------------- 108 (374)
T ss_pred --------------------------HHHHHHHHcCCCCCCeEE--EECHHHHHHHHHHHHhcCCCC-------------
Confidence 66678889884 565554 5789999999 9999998621
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
++.++.+|++.++++.+ ... +.|++|||||+||++
T Consensus 109 ------------------v~~l~~~~g~~~~~~~v------------------------e~~---~~v~~vhnETSTGv~ 143 (374)
T TIGR01365 109 ------------------VRVLEAEYGKLPDLKKV------------------------DFK---NDVVFTWNGTTSGVR 143 (374)
T ss_pred ------------------cEEEcCCCCCCCCHHHc------------------------CCC---CCEEEecCCCchhee
Confidence 22356789988876663 111 227899999999999
Q ss_pred ccc--ccc-cCCCcEEEecccccCCCcccccccceEEeccccccC-CCccEEEEEchhHHhhhCCC-----CCceeeccc
Q psy8733 290 FNY--IPD-SQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPI-----TPTVFHFKI 360 (621)
Q Consensus 290 ~p~--i~~-~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lG-P~Glg~livr~~ll~~~~~~-----~P~~ld~~~ 360 (621)
+|+ +.+ .++++++|||+||+|+.|+|++++|++++|+||||| |||++++++|++++++.... .|.|+++..
T Consensus 144 npv~~i~~~~~~~lliVDavSs~g~~~l~~d~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~ 223 (374)
T TIGR01365 144 VPNGDFIPADREGLTICDATSAAFAQDLDYHKLDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTK 223 (374)
T ss_pred ccccccccccCCCcEEEEccchhcCCCCChhHCcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhcccc
Confidence 997 333 368999999999999999999999999999999997 99999999999999987642 234555433
Q ss_pred c------ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCccccc
Q psy8733 361 N------ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDI 434 (621)
Q Consensus 361 ~------~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~ 434 (621)
. ..++++++||+++.++++.++|+|++++||++++++|++++++++|+++++++.++.++.+++.||+++++
T Consensus 224 ~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~-- 301 (374)
T TIGR01365 224 GGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVC-- 301 (374)
T ss_pred ccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEE--
Confidence 1 12467899999999999999999999988999999999999999999999997577676557789998775
Q ss_pred ccccccccCCchhhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHH
Q psy8733 435 FFTFSHVQTGSAFFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA 514 (621)
Q Consensus 435 ~~t~~~~~~~~~~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~ 514 (621)
+.+|++
T Consensus 302 ----v~~~~~---------------------------------------------------------------------- 307 (374)
T TIGR01365 302 ----LKVVDP---------------------------------------------------------------------- 307 (374)
T ss_pred ----EEeCCc----------------------------------------------------------------------
Confidence 111100
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCC-C-CccceeeccCCCH
Q psy8733 515 WIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRL-V-GGIRASIYNAITV 592 (621)
Q Consensus 515 ~~~~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~-~-~~~r~~~~~a~~~ 592 (621)
++.+ +|. +++.+....|.+.++++||+...|++. . ..|||+++++++.
T Consensus 308 ------~~~~---------------~~~---------~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~ 357 (374)
T TIGR01365 308 ------AIDA---------------LDE---------DAQADFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEK 357 (374)
T ss_pred ------cccc---------------ccc---------chhhHHHHHHHHHHHHCCEEEeccccccCCCceEEecCCcCCH
Confidence 0000 000 000123467888999999988877765 3 5699999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8733 593 DEAVILVKFMKEFRH 607 (621)
Q Consensus 593 ~~~~~l~~~~~~~~~ 607 (621)
++++.|+++|+...+
T Consensus 358 ~di~~l~~~l~~~~~ 372 (374)
T TIGR01365 358 SDLECLCPWLDWAFA 372 (374)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999997654
No 10
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=100.00 E-value=4e-46 Score=399.89 Aligned_cols=342 Identities=23% Similarity=0.314 Sum_probs=270.2
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHH
Q psy8733 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVA 132 (621)
Q Consensus 53 ~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~a 132 (621)
--|+|||+++|++|+++|... +.++.+++||+++|.++++++|+++++|++++++++|+|++||||.
T Consensus 5 ~~f~pGP~~~~~~v~~a~~~~-------~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~------ 71 (361)
T TIGR01366 5 GRFGSGPSKVRLEQLQALTTT-------AASLFGTSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATA------ 71 (361)
T ss_pred CcccCCCcCCCHHHHHHHHhc-------CccccccCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhH------
Confidence 469999999999999998754 3455668999999999999999999999999888899999999999
Q ss_pred HHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCC
Q psy8733 133 MNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQS 212 (621)
Q Consensus 133 lNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~ 212 (621)
+|++++.|++. ++.+++.+|.|+++|.+.+++.....
T Consensus 72 -------------------------a~~~~~~~l~~--~~~l~i~~G~~~~~~~~~a~~~~~~~---------------- 108 (361)
T TIGR01366 72 -------------------------FWDAATFGLIE--KKSLHLSFGEFSSKFAKAVKLAPWLG---------------- 108 (361)
T ss_pred -------------------------HHHHHHHhccc--ccccEEecCHHHHHHHHHHHhhhccC----------------
Confidence 44456677764 46788999999999999998742100
Q ss_pred CCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc
Q psy8733 213 TWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY 292 (621)
Q Consensus 213 ~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~ 292 (621)
+ ++.+..+|++.++ ..+++++++|++||+||++|+++|+
T Consensus 109 ------~--------~~~~~~~~~~~~~---------------------------~~~~~~~~lV~~~h~et~tG~~~pi 147 (361)
T TIGR01366 109 ------E--------PIIVTADPGSAPE---------------------------PQADPGVDVIAWAHNETSTGVAVPV 147 (361)
T ss_pred ------C--------ceEEecCCCCCCC---------------------------CccCCCCCEEEEcccCCccceeccc
Confidence 0 1112333443211 1246789999999999999999997
Q ss_pred --ccccCCCcEEEecccccCCCcccccccceEEeccccccC-CCccEEEEEchhHHhhhCCC------CCceeecccccc
Q psy8733 293 --IPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPI------TPTVFHFKINAD 363 (621)
Q Consensus 293 --i~~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lG-P~Glg~livr~~ll~~~~~~------~P~~ld~~~~~~ 363 (621)
|++++|++++|||+|++|+.|+|++++|++++|+|||+| |+|++++++|+++++++.+. .|.|+|+....+
T Consensus 148 ~~I~~~~g~~~iVDavqs~g~~~idv~~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~ 227 (361)
T TIGR01366 148 RRPEGSDDALVVIDATSGAGGLPVDIAETDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVD 227 (361)
T ss_pred ccccccCCCeEEEEcCccccCCCCCHHHCCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHh
Confidence 777889999999999999999999999999999999998 77999999999999887753 245666654322
Q ss_pred ---CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCccccccccccc
Q psy8733 364 ---NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSH 440 (621)
Q Consensus 364 ---~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~ 440 (621)
.+.++|||++..++++.++++|+.++||++++++|++++++++++++++++++......+..||+++.+
T Consensus 228 ~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~-------- 299 (361)
T TIGR01366 228 NSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGT-------- 299 (361)
T ss_pred ccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEE--------
Confidence 357889999999999999999999997899999999999999999999998554443334445654322
Q ss_pred ccCCchhhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcC
Q psy8733 441 VQTGSAFFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQG 520 (621)
Q Consensus 441 ~~~~~~~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~g 520 (621)
+.+
T Consensus 300 ---------------------------------------------v~~-------------------------------- 302 (361)
T TIGR01366 300 ---------------------------------------------IDF-------------------------------- 302 (361)
T ss_pred ---------------------------------------------EEC--------------------------------
Confidence 000
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCC--CccceeeccCCCHHHHHHH
Q psy8733 521 GLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLV--GGIRASIYNAITVDEAVIL 598 (621)
Q Consensus 521 g~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~--~~~r~~~~~a~~~~~~~~l 598 (621)
+ + .--.+.|.+.++++||+...||+.. +.+|||+++..|.+|+++|
T Consensus 303 -----------------------------~-~--g~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l 350 (361)
T TIGR01366 303 -----------------------------V-D--DIDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEAL 350 (361)
T ss_pred -----------------------------C-C--ccCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHH
Confidence 0 0 0012346677788899988888774 3499999999999999999
Q ss_pred HHHHHHHHHH
Q psy8733 599 VKFMKEFRHK 608 (621)
Q Consensus 599 ~~~~~~~~~~ 608 (621)
++.|++..++
T Consensus 351 ~~al~~~~~~ 360 (361)
T TIGR01366 351 TECVDWVVER 360 (361)
T ss_pred HHHHHHHHhh
Confidence 9999997653
No 11
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=100.00 E-value=2.7e-45 Score=395.41 Aligned_cols=286 Identities=20% Similarity=0.272 Sum_probs=228.4
Q ss_pred ccCCCCCceeccCCCCCCCHH-HHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCC
Q psy8733 45 MSSAAHPVINFGAGPAKLPRE-VLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGG 123 (621)
Q Consensus 45 m~~~~~~~~lf~aGPs~~P~~-Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gg 123 (621)
.|...+..++|+|||+.+|++ |++++.+.+ .+.+||+++|.++++++|++++++||++++++|+|++||
T Consensus 6 ~~~~~~~~~~f~~Gp~~~~~~~v~~a~~~~~----------~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs 75 (378)
T PRK03080 6 IPALRPADPRFSSGPCKKRPGWQLEALADAL----------LGRSHRQKPVKALLKRVIEGTRELLSLPEGYEVGIVPGS 75 (378)
T ss_pred CCCcCCCCCCcCCCCcCCChHHHHHHHHhhh----------cccCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCc
Confidence 354435568899999999999 999999775 225799999999999999999999999888899999999
Q ss_pred cchhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHH-HHHhCC-ceeeecc
Q psy8733 124 GTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAE-AEKYGK-VNLVIPK 201 (621)
Q Consensus 124 gT~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~-a~~~G~-~~~~~~~ 201 (621)
||+ +|++++.||+. +++++++.+|.|+++|.++ ++++|. ...
T Consensus 76 ~T~-------------------------------~~~~~~~~l~~-~~~~~vi~~g~f~~~~~~~~~~~~g~~~v~---- 119 (378)
T PRK03080 76 DTG-------------------------------AWEMALWSLLG-ARRVDHLAWESFGSKWATDVVKQLKLEDPR---- 119 (378)
T ss_pred hHH-------------------------------HHHHHHHhcCC-CCcceEEEeCHHHHHHHHHHHhhcCCCCce----
Confidence 999 45556777764 2467788899999999985 467775 322
Q ss_pred cccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEec
Q psy8733 202 VSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCD 281 (621)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~th 281 (621)
.+..+|+..++++ ++ +. ++.|++||
T Consensus 120 ----------------------------~~~~~~g~~~d~~------------------------~i--~~-~~~V~~~h 144 (378)
T PRK03080 120 ----------------------------VLEADYGSLPDLS------------------------AV--DF-DRDVVFTW 144 (378)
T ss_pred ----------------------------EeccCCCCCCCHh------------------------hc--CC-CCCEEEEe
Confidence 2333455443322 22 11 56799999
Q ss_pred ccccccccccc--cc-ccCCCcEEEecccccCCCcccccccceEEeccccccC-CCccEEEEEchhHHhhhCCCC-----
Q psy8733 282 NETVDGVEFNY--IP-DSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPIT----- 352 (621)
Q Consensus 282 nET~tGv~~p~--i~-~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lG-P~Glg~livr~~ll~~~~~~~----- 352 (621)
+||+||+++|+ |+ +.+|++++||++|++|+.|+|++++|++++|+||||+ |+|+|++|+|+++++++.+..
T Consensus 145 ~~t~tG~~~pi~~I~~~~~g~~~vVDa~qs~G~~pidv~~iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~~ 224 (378)
T PRK03080 145 NGTTTGVRVPVARWIGADREGLTICDATSAAFALPLDWSKLDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPI 224 (378)
T ss_pred cCCccceeccchhhccccCCCeEEEecccccccCCCCHHHCcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCCCCC
Confidence 99999999997 44 5679999999999999999999999999999999995 999999999999999887632
Q ss_pred Cceeeccc---cc---cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCC
Q psy8733 353 PTVFHFKI---NA---DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCR 426 (621)
Q Consensus 353 P~~ld~~~---~~---~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~R 426 (621)
|.|+|+.. .. ...++++||++.+++++.++|+|+.++||++++++|++++++++++.|++++++.....++..|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 304 (378)
T PRK03080 225 PKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATR 304 (378)
T ss_pred chhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCcccc
Confidence 34565544 11 1245789999999999999999999987899999999999999999999998665554345567
Q ss_pred CCCcc
Q psy8733 427 SRMNV 431 (621)
Q Consensus 427 S~~nv 431 (621)
|++++
T Consensus 305 s~~i~ 309 (378)
T PRK03080 305 SNTSV 309 (378)
T ss_pred CccEE
Confidence 75543
No 12
>KOG2862|consensus
Probab=100.00 E-value=3e-44 Score=364.56 Aligned_cols=290 Identities=20% Similarity=0.342 Sum_probs=251.3
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHH
Q psy8733 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVA 132 (621)
Q Consensus 53 ~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~a 132 (621)
.||.|||+.+|++|++||.+.+ ..|+|++|.+|+++.++.++.+|.+.+.+. +.+.|+||.
T Consensus 19 ~L~gPGPsnl~~~V~~A~~~~~------------lgh~sPe~~qIm~~v~egikyVFkT~n~~t-f~isgsGh~------ 79 (385)
T KOG2862|consen 19 TLLGPGPSNLSGRVQEAMSRPS------------LGHMSPEFVQIMDEVLEGIKYVFKTANAQT-FVISGSGHS------ 79 (385)
T ss_pred eeecCCCcCCCHHHHHhhcCCc------------cccCCHHHHHHHHHHHHHHHHHhccCCCce-EEEecCCcc------
Confidence 4999999999999999998876 789999999999999999999999988754 445789999
Q ss_pred HHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCC
Q psy8733 133 MNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQS 212 (621)
Q Consensus 133 lNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~ 212 (621)
+||+++.|++.|||+++++.+|.||+||++.++|+|+.
T Consensus 80 -------------------------g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~----------------- 117 (385)
T KOG2862|consen 80 -------------------------GWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAE----------------- 117 (385)
T ss_pred -------------------------hHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCce-----------------
Confidence 55567889999999999999999999999999999973
Q ss_pred CCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc
Q psy8733 213 TWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY 292 (621)
Q Consensus 213 ~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~ 292 (621)
|+.|+.+||+.+..|.+.+ .+. ..++++|++||+||+||+.+|+
T Consensus 118 ---------------V~~v~~~~G~~~~le~i~~--------------------~ls-qh~p~~vfv~hgdsSTgV~q~~ 161 (385)
T KOG2862|consen 118 ---------------VDVVEADIGQAVPLEEITE--------------------KLS-QHKPKAVFVTHGDSSTGVLQDL 161 (385)
T ss_pred ---------------eeEEecCcccCccHHHHHH--------------------HHH-hcCCceEEEEecCccccccchH
Confidence 3446788999988777521 121 2578999999999999999995
Q ss_pred ------ccccCCCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEchhHHhhhCCC--CC--ceeecc
Q psy8733 293 ------IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVREDLLEYALPI--TP--TVFHFK 359 (621)
Q Consensus 293 ------i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~~ll~~~~~~--~P--~~ld~~ 359 (621)
++++++++|+||+++|+|+.|+.+|+|+ ++++++||.|| |+|++++..|+++++++... .| .|||+.
T Consensus 162 ~~~~g~lc~k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~ 241 (385)
T KOG2862|consen 162 LAISGELCHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDIL 241 (385)
T ss_pred HHHHHHHhhcCCeEEEEechhhcCCccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHH
Confidence 4578999999999999999999999998 99999999997 99999999999999998653 23 377765
Q ss_pred ccc-------cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCccc
Q psy8733 360 INA-------DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVT 432 (621)
Q Consensus 360 ~~~-------~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~ 432 (621)
... +....+.|||+..+|+|.+||+.|.++ |++++++||+++++.++..|+++| +..+.++++.|+|+
T Consensus 242 ~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~ee-GL~~~~~rH~e~s~~l~~~l~~~G-Lq~fv~~e~~rlpt--- 316 (385)
T KOG2862|consen 242 RLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEE-GLENSWRRHREMSKWLKLSLEALG-LQLFVVDEELRLPT--- 316 (385)
T ss_pred hhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhC-ccceecChhhccCc---
Confidence 421 223445799999999999999999999 999999999999999999999986 99999999999975
Q ss_pred ccccccccccCCchh
Q psy8733 433 DIFFTFSHVQTGSAF 447 (621)
Q Consensus 433 ~~~~t~~~~~~~~~~ 447 (621)
+|.+.+|.+..+
T Consensus 317 ---vttv~vp~gvDw 328 (385)
T KOG2862|consen 317 ---VTTVKVPYGVDW 328 (385)
T ss_pred ---ceeeecCCCCCH
Confidence 688999998644
No 13
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-39 Score=349.35 Aligned_cols=305 Identities=18% Similarity=0.236 Sum_probs=237.9
Q ss_pred cccccccchhhhhhccCCCCCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccc-cHHHHHHHHHHHHHHHHHh
Q psy8733 31 IRNTYLDSRIHTTAMSSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHR-SADYTKINNDTQAALRELL 109 (621)
Q Consensus 31 ~~~~~~~~~~~~~~m~~~~~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shr-s~~f~~i~~~ar~~La~Ll 109 (621)
.|.+|+ .+.+.. .+..+|+++++.+++|+.|++++.++++.|..+ +++..|. +....+.++++|+.+++|+
T Consensus 8 ~r~~fp--~l~~~~---~~~~vylD~aa~~~~p~~V~~a~~~~~~~~~an---~~r~~~~~~~~~t~~~e~aRe~va~~~ 79 (405)
T COG0520 8 VRADFP--ALKREV---GKPLVYLDNAATSQKPQAVLDAVAEYYRRYNAN---VHRGAHTLAEEATDLYEAAREAVARFL 79 (405)
T ss_pred HHhhCH--HHhhcc---CCCeEEecCcccccCCHHHHHHHHHHHHhhcCC---cCcccchHHHHHHHHHHHHHHHHHHHh
Confidence 666666 443332 225689999999999999999999998776543 3333444 5567889999999999999
Q ss_pred CCCCCCEEEEEcCCcchhhhHHHHHHhhhccC--CCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHH
Q psy8733 110 NVPNNYKILFLQGGGTGMFAAVAMNLISSSMN--VPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAA 187 (621)
Q Consensus 110 ~~p~~yeI~f~~gggT~~~~a~alNlla~~~~--~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~ 187 (621)
|+++..+|+|+ .|+|+ +||+++.+++ +++||+|+++.. | .+.|++ .|..
T Consensus 80 ~a~~~~eIvft-~~tT~-----aln~va~~l~~~~~~gdeIv~s~~------E-H~sn~~----------------pw~~ 130 (405)
T COG0520 80 NADSSDEIVFT-RGTTE-----ALNLVARGLGRSLKPGDEIVVSDL------E-HHSNIV----------------PWQE 130 (405)
T ss_pred CCCCCCeEEEe-CChhH-----HHHHHHHHhhhhhcCCCEEEEccC------c-chhhHH----------------HHHH
Confidence 99864589998 56888 8999999997 899999999864 2 255664 2788
Q ss_pred HHHHhCCceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccc
Q psy8733 188 EAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQST 267 (621)
Q Consensus 188 ~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~ 267 (621)
.+++.|.+..+++.. ..+.++ .+.
T Consensus 131 ~~~~~Ga~v~~i~~~-------------------------------------------------------~~g~~~-~~~ 154 (405)
T COG0520 131 LAKRTGAKVRVIPLD-------------------------------------------------------DDGLLD-LDA 154 (405)
T ss_pred HHHhcCcEEEEEecC-------------------------------------------------------CCCCcC-HHH
Confidence 899999765544321 001111 122
Q ss_pred c--CCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEE
Q psy8733 268 W--NRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITV 337 (621)
Q Consensus 268 l--~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~ 337 (621)
+ .++++|++|+++|.+|++|+++|+ +++++|++++||++|++|+.|+|++++| |+++|+|||+ ||.|+|+
T Consensus 155 ~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~GiGv 234 (405)
T COG0520 155 LEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGV 234 (405)
T ss_pred HHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhcCCCEEEEcccccccCCCceEE
Confidence 2 478899999999999999999996 4568999999999999999999999987 9999999977 7999999
Q ss_pred EEEchhHHhhhCCCCC--ceeecccc------ccCC--CccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q psy8733 338 VIVREDLLEYALPITP--TVFHFKIN------ADNN--SVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLY 407 (621)
Q Consensus 338 livr~~ll~~~~~~~P--~~ld~~~~------~~~~--s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~ 407 (621)
+|+|+++++++.|... .+.++... .+.+ ...+|||+..++++++|++|+.++ |+++++++.++++++++
T Consensus 235 Ly~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~i-g~~~i~~~e~~L~~~~~ 313 (405)
T COG0520 235 LYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEI-GMEAIEAHERELTEYLL 313 (405)
T ss_pred EEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence 9999999999876432 22222221 1222 234799999999999999999999 89999999999999999
Q ss_pred HHHHccCCcccCccCCCCCCCC
Q psy8733 408 QEIDNSDKFYECPVQAGCRSRM 429 (621)
Q Consensus 408 e~L~~~~g~~~~~~~~~~RS~~ 429 (621)
+.|.+++++.+.....+.|+++
T Consensus 314 ~~L~~~~~v~i~g~~~~~r~~~ 335 (405)
T COG0520 314 EGLSELPGVEIYGPPDADRGGI 335 (405)
T ss_pred HHHhcCCCeEEecCCcccCceE
Confidence 9999999877654332455553
No 14
>PLN02409 serine--glyoxylate aminotransaminase
Probab=100.00 E-value=6.9e-38 Score=340.24 Aligned_cols=284 Identities=18% Similarity=0.244 Sum_probs=226.0
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
.+.+||+|||+++|++|+++|.+++ ++||+++|.++++++|+.+++++|++.++.++| +++||+
T Consensus 8 ~~~~l~~pGP~~~~~~V~~a~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~-~~~gt~--- 71 (401)
T PLN02409 8 GRNHLFVPGPVNIPERVLRAMNRPN------------EDHRSPAFPALTKELLEDVKYIFKTKSGTPFIF-PTTGTG--- 71 (401)
T ss_pred CCceeccCCCCCCCHHHHHHhcCCC------------CCCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEE-eCCcHH---
Confidence 4568999999999999999998765 689999999999999999999999986555555 578898
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
+++++..|++++||++++..+|+|+.+|.+.++++|...+..+
T Consensus 72 ----------------------------a~~~a~~~~~~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~--------- 114 (401)
T PLN02409 72 ----------------------------AWESALTNTLSPGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVE--------- 114 (401)
T ss_pred ----------------------------HHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHcCCceEEEE---------
Confidence 4455667788888999888899999999999999986543322
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCC--CCceEEEEeccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRD--PEASYLYYCDNETVDG 287 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~--~~t~~V~~thnET~tG 287 (621)
.+|+..+++|+++ +.+.-+ +++++|+++|+||+||
T Consensus 115 -----------------------~~~~~~~~~~~l~--------------------~~l~~~~~~~~k~v~~~~~~~~tG 151 (401)
T PLN02409 115 -----------------------SPWGQGADLDILK--------------------SKLRQDTNHKIKAVCVVHNETSTG 151 (401)
T ss_pred -----------------------CCCCCCCCHHHHH--------------------HHHhhCcCCCccEEEEEeeccccc
Confidence 2233223333320 111111 3799999999999999
Q ss_pred ccccc-----c--cccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCC--CCce
Q psy8733 288 VEFNY-----I--PDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPI--TPTV 355 (621)
Q Consensus 288 v~~p~-----i--~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~--~P~~ 355 (621)
+.+|+ + ++++|+++|||++|++|+.|+|+++|+ ++++|+|||+ ||+|+|++++++++++++.+. .|.+
T Consensus 152 ~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~ 231 (401)
T PLN02409 152 VTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVF 231 (401)
T ss_pred ccCCHHHHHHHHhhhccCcEEEEEcccccCCccccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCee
Confidence 99996 5 667899999999999999999999886 9999999999 599999999999999987653 2345
Q ss_pred eeccccc---cCC-CccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcc
Q psy8733 356 FHFKINA---DNN-SVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNV 431 (621)
Q Consensus 356 ld~~~~~---~~~-s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv 431 (621)
++|.... +.+ .+.+|||+..++++.++++++.++ |++++++|++++++++++.|+++ |+.+...++..||++.+
T Consensus 232 ~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~-G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~ 309 (401)
T PLN02409 232 FDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEE-GLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVT 309 (401)
T ss_pred cCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceE
Confidence 6654321 122 236799999999999999999988 89999999999999999999988 57766544456776543
No 15
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=100.00 E-value=2e-37 Score=331.82 Aligned_cols=291 Identities=21% Similarity=0.276 Sum_probs=218.8
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
+|||+|||+++|+.|++++.+++.++..++.+ ..+|++.++.++++++|+.+++++|++++++|+|+ +|+|.+
T Consensus 1 iYld~~~~~~~p~~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~-~~~t~a---- 73 (371)
T PF00266_consen 1 IYLDNAGTGPMPKSVLEAISDYLRNFYANPHS--GVSHRSREFAEILEEAREALAKLLGAPPDEEVVFT-SNGTEA---- 73 (371)
T ss_dssp EEEBTSSS-B-BHHHHHHHHHHHHHSGSSTST--SSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEE-SSHHHH----
T ss_pred CEeeCCCccCCCHHHHHHHHHHHHHhhhcCcc--cccchhhhhhHHHHHHHHHHHHhcCCccccccccc-cccchh----
Confidence 69999999999999999999999888776643 36889999999999999999999999986789987 567883
Q ss_pred HHHHhhhccCCCCCceeEeecCCcchhHHHHHHHh---hCCCCcEEEEEcChHHHH--HHHHHHHhCCceeeeccccccc
Q psy8733 132 AMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNL---IGRTGKADYVVTGSWSKK--AAAEAEKYGKVNLVIPKVSKYV 206 (621)
Q Consensus 132 alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL---~~~g~~~~~v~tG~~~~~--~~~~a~~~G~~~~~~~~~~~~~ 206 (621)
+|+ ++.++ +++|+++++...++++.+ |...++++|....+++..
T Consensus 74 -~~~--------------------------~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~---- 122 (371)
T PF00266_consen 74 -LNA--------------------------VASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPAD---- 122 (371)
T ss_dssp -HHH--------------------------HHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEG----
T ss_pred -hhh--------------------------hhhccccccccccccccccccccccccccccccccchhhhcccccc----
Confidence 333 33444 567788888888999987 777788888654433211
Q ss_pred ccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccc
Q psy8733 207 SIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVD 286 (621)
Q Consensus 207 ~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~t 286 (621)
+...++++++ +-.+++++++|+++|++|.+
T Consensus 123 ----------------------------~~~~~~~~~~----------------------~~~l~~~~~lv~~~~~~~~t 152 (371)
T PF00266_consen 123 ----------------------------PGGSLDLEDL----------------------EEALNPDTRLVSISHVENST 152 (371)
T ss_dssp ----------------------------TTSSCSHHHH----------------------HHHHHTTESEEEEESBETTT
T ss_pred ----------------------------ccchhhhhhh----------------------hhhhccccceEEeecccccc
Confidence 1111111111 01346899999999999999
Q ss_pred cccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCce--ee
Q psy8733 287 GVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTV--FH 357 (621)
Q Consensus 287 Gv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~--ld 357 (621)
|+++|+ +++++|+++++|++|++|..|+|+++++ ++++|+||++||+|+|++++|++++++++|..+.. .+
T Consensus 153 G~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~Kl~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~ 232 (371)
T PF00266_consen 153 GVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDELGADFLVFSSHKLGGPPGLGFLYVRPEAIERLRPAKPGGGYLD 232 (371)
T ss_dssp TBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTTTESEEEEESTSTTSSSTEEEEEEEHHHHHHHHTSSSSSSTTT
T ss_pred cEEeeeceehhhhhccCCceeEechhccccccccccccccceeeecccccCCCCchhhheehhhhhhccccccccccccc
Confidence 999996 3467899999999999999999999987 79999999557999999999999999997654332 11
Q ss_pred ccc-----cccCCCc--cCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCc
Q psy8733 358 FKI-----NADNNSV--YNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMN 430 (621)
Q Consensus 358 ~~~-----~~~~~s~--~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~n 430 (621)
... ......+ .+|||+..++++..+++++.+. |++++++|+.++++++++.|++++++.+...+.+.|++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~-g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i 311 (371)
T PF00266_consen 233 FPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEI-GIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSI 311 (371)
T ss_dssp HHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTE
T ss_pred cccchhcccccccccccccceeeehhhhHHHHHhhhhcc-ccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccce
Confidence 111 0112222 3699999999999999999776 8999999999999999999999987666443444555444
Q ss_pred c
Q psy8733 431 V 431 (621)
Q Consensus 431 v 431 (621)
+
T Consensus 312 ~ 312 (371)
T PF00266_consen 312 V 312 (371)
T ss_dssp E
T ss_pred E
Confidence 3
No 16
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=100.00 E-value=4e-35 Score=312.93 Aligned_cols=281 Identities=21% Similarity=0.259 Sum_probs=214.2
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
+.++|+|||+.+++.|++++... ..||+++|.++++++|+.+++++|++++++.+++++|||+
T Consensus 3 ~~~l~~pgp~~~~~~v~~~~~~~-------------~~~~~~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~---- 65 (363)
T TIGR02326 3 NYLLLTPGPLTTSRTVKEAMLFD-------------WCTWDSDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTF---- 65 (363)
T ss_pred ceeEecCCCCCCCHHHHHHhCCC-------------CCCCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHH----
Confidence 36799999999999999998775 3578889999999999999999999875544444588999
Q ss_pred HHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCC
Q psy8733 131 VAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPD 210 (621)
Q Consensus 131 ~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~ 210 (621)
++++++.+++.++++++++.+|.|+.++...++++|...+..+.
T Consensus 66 ---------------------------al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~--------- 109 (363)
T TIGR02326 66 ---------------------------AVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYLGIPHHVVDT--------- 109 (363)
T ss_pred ---------------------------HHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeC---------
Confidence 33345667777778888888999999888888999865433221
Q ss_pred CCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccc
Q psy8733 211 QSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290 (621)
Q Consensus 211 ~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~ 290 (621)
+|....+++.+ .+.+..++++++|+++|+||+||+++
T Consensus 110 -----------------------~~~~~~d~~~l--------------------~~~l~~~~~~~~v~~~~~~~~tG~~~ 146 (363)
T TIGR02326 110 -----------------------GEVEPPDVVEV--------------------EAILAADPAITHIALVHCETTTGILN 146 (363)
T ss_pred -----------------------CCCCCCCHHHH--------------------HHHHhhCCCccEEEEEeecCCccccC
Confidence 12222222221 01122235678899999999999999
Q ss_pred cc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCCC-Cceeeccc-
Q psy8733 291 NY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPIT-PTVFHFKI- 360 (621)
Q Consensus 291 p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~~-P~~ld~~~- 360 (621)
|+ +++++|+++++|++|++|+.|+|+++|+ ++++|+|||+ ||+|+|++++++++++++.+.. +.+++...
T Consensus 147 ~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 226 (363)
T TIGR02326 147 PIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQ 226 (363)
T ss_pred cHHHHHHHHHHcCCEEEEEccccccCcccchhhcCccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHH
Confidence 96 4568899999999999999999999886 9999999999 6999999999999988765432 22333211
Q ss_pred ---cc-cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCC
Q psy8733 361 ---NA-DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRM 429 (621)
Q Consensus 361 ---~~-~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~ 429 (621)
.. ..+.+.+|+|++.++++.++++++.++||++++++++.++++++++.|++++ +.... .++.|+++
T Consensus 227 ~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~-~~~~~~~~ 297 (363)
T TIGR02326 227 WRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRALG-FEPLL-DDEIQSPI 297 (363)
T ss_pred HHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcC-Ceecc-CcccCCce
Confidence 11 1233446899999999999999998887899999999999999999999884 54432 23345654
No 17
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=100.00 E-value=3.3e-33 Score=298.46 Aligned_cols=347 Identities=21% Similarity=0.250 Sum_probs=259.3
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
+.++|+|||.++++.|+++|++. ..||+++|.+.++++|+.+++++|++++++++++.++||.
T Consensus 5 ~~~~~~pgP~~~~~~~~~a~~~~-------------~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~---- 67 (368)
T PRK13479 5 DPLLLTPGPLTTSRTVREAMLRD-------------WGSWDDDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTF---- 67 (368)
T ss_pred CceeecCCCCCCCHHHHHHhCCC-------------CCCCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHH----
Confidence 45699999999999999998775 3577889999999999999999999765565656688999
Q ss_pred HHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCC
Q psy8733 131 VAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPD 210 (621)
Q Consensus 131 ~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~ 210 (621)
++++++.++..+|+++.+..+|.|+.+|...++++|...+..+.
T Consensus 68 ---------------------------~l~~~~~~l~~~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~--------- 111 (368)
T PRK13479 68 ---------------------------SVEAAIGSLVPRDGKVLVPDNGAYGARIAQIAEYLGIAHVVLDT--------- 111 (368)
T ss_pred ---------------------------HHHHHHHhccCCCCeEEEEeCCchHHHHHHHHHHcCCcEEEEEC---------
Confidence 34445666777778888888899999888888888864333221
Q ss_pred CCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccc
Q psy8733 211 QSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290 (621)
Q Consensus 211 ~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~ 290 (621)
+|...++++++ .+.+..++++++|.++|+||+||+.+
T Consensus 112 -----------------------~~~~~~d~~~l--------------------~~~l~~~~~~~~v~~~~~~~~tG~~~ 148 (368)
T PRK13479 112 -----------------------GEDEPPDAAEV--------------------EAALAADPRITHVALVHCETTTGILN 148 (368)
T ss_pred -----------------------CCCCCCCHHHH--------------------HHHHHhCCCCcEEEEEcccCcccccc
Confidence 11112222221 01112235678999999999999999
Q ss_pred cc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCCCCc-eeecccc
Q psy8733 291 NY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPITPT-VFHFKIN 361 (621)
Q Consensus 291 p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~~P~-~ld~~~~ 361 (621)
|+ +++++|+++++|++|++|..|+|+++++ ++++|+|||+ ||+|+|++++++++++++....+. ++|+...
T Consensus 149 ~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 228 (368)
T PRK13479 149 PLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQ 228 (368)
T ss_pred CHHHHHHHHHHcCCEEEEEcccccCCccccccccCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHHH
Confidence 95 4567899999999999999999999875 8889999998 799999999999999887654332 3443221
Q ss_pred ----ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccc
Q psy8733 362 ----ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFT 437 (621)
Q Consensus 362 ----~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t 437 (621)
.+.+...+||++.+++++.++++++.++||++++.+++.++++++++.|++++ +.... +++.|++..++
T Consensus 229 ~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~-~~~~~~~~~~~----- 301 (368)
T PRK13479 229 WAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRALG-FEPLL-DAEIQSPIIVT----- 301 (368)
T ss_pred HhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcC-CcccC-CchhcCceEEE-----
Confidence 12234456999999999999999998887899999999999999999999984 65432 23345543222
Q ss_pred cccccCCchhhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHH
Q psy8733 438 FSHVQTGSAFFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIK 517 (621)
Q Consensus 438 ~~~~~~~~~~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~ 517 (621)
+..
T Consensus 302 --------------------------------------------------~~~--------------------------- 304 (368)
T PRK13479 302 --------------------------------------------------FHA--------------------------- 304 (368)
T ss_pred --------------------------------------------------EEC---------------------------
Confidence 000
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCC-CCccceeeccCCCHHHHH
Q psy8733 518 RQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRL-VGGIRASIYNAITVDEAV 596 (621)
Q Consensus 518 ~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~-~~~~r~~~~~a~~~~~~~ 596 (621)
+ .......+++.+.++++||+...|... .+.+|++.+...+.||++
T Consensus 305 --------------------------------~-~~~~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~ 351 (368)
T PRK13479 305 --------------------------------P-ADPAYDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIR 351 (368)
T ss_pred --------------------------------C-CCCCcCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHH
Confidence 0 000011245777888889998776543 567999998899999999
Q ss_pred HHHHHHHHHHHHcC
Q psy8733 597 ILVKFMKEFRHKHS 610 (621)
Q Consensus 597 ~l~~~~~~~~~~~~ 610 (621)
.+++.|+++.++.+
T Consensus 352 ~~l~~L~~~l~~~~ 365 (368)
T PRK13479 352 RLVAAIAEALYWMG 365 (368)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999887654
No 18
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=100.00 E-value=4.2e-31 Score=278.75 Aligned_cols=267 Identities=21% Similarity=0.283 Sum_probs=207.0
Q ss_pred eccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCC-EEEEEcCCcchhhhHHH
Q psy8733 54 NFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNY-KILFLQGGGTGMFAAVA 132 (621)
Q Consensus 54 lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~y-eI~f~~gggT~~~~a~a 132 (621)
+|+|||+.+++.|+++++.. .+||++.|.++++++|+.+++++|+++++ +|+|+ +|||+
T Consensus 2 ~~~p~p~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~i~~~-~~gt~------ 61 (355)
T TIGR03301 2 LLTPGPLSTSATVRDAMLVD-------------WCHWDSEFNDVTDQVRDRLLALAGGDDNHTCVLLQ-GSGTF------ 61 (355)
T ss_pred cCcCCCCCCCHHHHHHhhhh-------------ccCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEe-CCcHH------
Confidence 79999999999999999884 47888899999999999999999998765 45554 78899
Q ss_pred HHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCC
Q psy8733 133 MNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQS 212 (621)
Q Consensus 133 lNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~ 212 (621)
+++.++.+++.+++++.++.+|.|+.++...++++|...+..+.
T Consensus 62 -------------------------~l~~~~~~~~~~~~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~----------- 105 (355)
T TIGR03301 62 -------------------------AVEATIGSLVPRDGKLLVLINGAYGERLAKICEYLGIPHTDLNF----------- 105 (355)
T ss_pred -------------------------HHHHHHHhccCCCCeEEEECCCchhhHHHHHHHHcCCceEEEec-----------
Confidence 34445666667778888888899988777788888865333221
Q ss_pred CCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc
Q psy8733 213 TWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY 292 (621)
Q Consensus 213 ~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~ 292 (621)
++...+++|++ .+.+..++++++|+++|+||.+|+.+|+
T Consensus 106 ---------------------~~~~~~d~~~l--------------------~~~l~~~~~~~~v~~~~~~~~~G~~~~~ 144 (355)
T TIGR03301 106 ---------------------SEYEPPDLNRI--------------------EEALAADPDITHVATVHHETTTGILNPL 144 (355)
T ss_pred ---------------------CCCCCCCHHHH--------------------HHHHHhCCCceEEEEEecCCcccchhHH
Confidence 11112222222 0111223567899999999999999995
Q ss_pred -----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCC-CCCceeecccc--
Q psy8733 293 -----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALP-ITPTVFHFKIN-- 361 (621)
Q Consensus 293 -----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~-~~P~~ld~~~~-- 361 (621)
+++++++++|+|+++++|+.|+++++++ ++++|.||++ ||+|+|++++++++++++.. ..|.++++...
T Consensus 145 ~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (355)
T TIGR03301 145 EAIAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWA 224 (355)
T ss_pred HHHHHHHHHcCCEEEEEeccccCCcccchhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHH
Confidence 4568899999999999999999999876 8999999998 69999999999999988763 23434443221
Q ss_pred --ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 362 --ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 362 --~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
...+.+.+||++..++++.++++++.++|++++..++.+++++++++.|++++ +..
T Consensus 225 ~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g-~~~ 282 (355)
T TIGR03301 225 YMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALG-FQP 282 (355)
T ss_pred HhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcC-Cee
Confidence 11234567999999999999999999886699999999999999999999874 543
No 19
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.98 E-value=2.6e-30 Score=274.80 Aligned_cols=287 Identities=16% Similarity=0.127 Sum_probs=220.4
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
.+|+|+++++|+.++|+++|..++..+.+++.|+|.. +.+..++++++|+.+++++|+++ ++|+|+ +|||+
T Consensus 2 miYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~---G~~A~~~ve~AR~~iA~llga~~-~eIiFT-SG~TE---- 72 (386)
T COG1104 2 MIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSSLHSF---GREARKAVEEAREQIAKLLGADP-EEIIFT-SGATE---- 72 (386)
T ss_pred cccccccccCCCCHHHHHHHHHHHHhhcCCccchhHh---HHHHHHHHHHHHHHHHHHhCCCC-CeEEEe-cCCcH----
Confidence 5899999999999999999999999988888875432 66889999999999999999987 599997 78999
Q ss_pred HHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCC
Q psy8733 131 VAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPD 210 (621)
Q Consensus 131 ~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~ 210 (621)
+.|++-.+ +..-. ...++.-++++..-+|+++...-++
T Consensus 73 -snNlaI~g----------------------~~~a~-~~~~~~~HIIts~iEH~aVl~~~~~------------------ 110 (386)
T COG1104 73 -SNNLAIKG----------------------AALAY-RNAQKGKHIITSAIEHPAVLNTCRY------------------ 110 (386)
T ss_pred -HHHHHHHh----------------------hHHhh-hcccCCCeEEEcccccHHHHHHHHH------------------
Confidence 67762211 00001 1112234555556677665443222
Q ss_pred CCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCcccc--CCCCCceEEEEecccccccc
Q psy8733 211 QSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW--NRDPEASYLYYCDNETVDGV 288 (621)
Q Consensus 211 ~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l--~i~~~t~~V~~thnET~tGv 288 (621)
.+.++++|+|++..+ .|.+. ++++ .++++|.+|++-|.++-+|+
T Consensus 111 --Le~~g~~Vtyl~V~~-------------------------------~G~v~-~e~L~~al~~~T~LVSim~aNnE~G~ 156 (386)
T COG1104 111 --LERQGFEVTYLPVDS-------------------------------NGLVD-LEQLEEALRPDTILVSIMHANNETGT 156 (386)
T ss_pred --HHhcCCeEEEeCCCC-------------------------------CCeEc-HHHHHHhcCCCceEEEEEecccCeee
Confidence 123466777774211 12221 2333 47899999999999999999
Q ss_pred cccc-----ccccCCCcEEEecccccCCCccccccc--ceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeecccc
Q psy8733 289 EFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKF--GVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKIN 361 (621)
Q Consensus 289 ~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~--gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~ 361 (621)
++|+ ++++++++|++|++|++|..|||++++ |++.+|+||..||.|+|++|+|++.. ..|- + +...
T Consensus 157 IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~GpkGiGaLyv~~~~~-----~~p~-i-~GGg 229 (386)
T COG1104 157 IQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYVRPGVR-----LEPL-I-HGGG 229 (386)
T ss_pred cccHHHHHHHHHHcCCeEEEehhhhcCceeccccccCcceEEeehhhccCCCceEEEEECCCCc-----cCce-e-ccCc
Confidence 9997 457899999999999999999999995 59999999999999999999987752 2232 2 2334
Q ss_pred ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc-CCcccCccCCCCCCCCccc
Q psy8733 362 ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS-DKFYECPVQAGCRSRMNVT 432 (621)
Q Consensus 362 ~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~-~g~~~~~~~~~~RS~~nv~ 432 (621)
++.+.+.+|.|+++|.++++|++...+. ++...++.+.+.++|.+.|.+. ++++++. +++.|+|.+++
T Consensus 230 QE~g~RsGTenv~~Ivg~~~A~~~a~~~--~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g-~~~~rlP~~~~ 298 (386)
T COG1104 230 QERGLRSGTENVPGIVGFGKAAEIAVEE--LEEENARLRKLRDRLEDGLLEIIPDVYLNG-DDEPRLPNILN 298 (386)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCcEEEcC-CcccCCCCeEE
Confidence 5677889999999999999999999885 9999999999999999999976 7777766 34789998775
No 20
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.98 E-value=4.5e-30 Score=278.67 Aligned_cols=283 Identities=17% Similarity=0.168 Sum_probs=209.8
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCC-CcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTG-ISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g-~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
+.+||+++|.+++|++|++++.+++.++..+. .+ .++++.++.+.++++|+.+++++|+++.++|+|+ +|+|+
T Consensus 23 ~~iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t-~g~t~-- 96 (406)
T PRK09295 23 PLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRG---IHTLSAQATEKMENVRKQAALFINARSAEELVFV-RGTTE-- 96 (406)
T ss_pred ceEEEeCcccccCCHHHHHHHHHHHHhcCCCCCCc---ccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEe-CCHHH--
Confidence 36999999999999999999999987654322 12 3445778999999999999999998544589987 56888
Q ss_pred hHHHHHHhhhcc---CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccc
Q psy8733 129 AAVAMNLISSSM---NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 129 ~a~alNlla~~~---~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
++|+++.++ .+++||+|+++.. .+ +.++. .|...+++.|...+.++..
T Consensus 97 ---~l~~~~~~~~~~~~~~gd~vl~~~~----~~---~s~~~----------------~~~~~~~~~g~~v~~v~~~--- 147 (406)
T PRK09295 97 ---GINLVANSWGNSNVRAGDNIIISEM----EH---HANIV----------------PWQMLCARVGAELRVIPLN--- 147 (406)
T ss_pred ---HHHHHHHHhhhhcCCCcCEEEECcc----hh---hHHHH----------------HHHHHHHHcCcEEEEEecC---
Confidence 788877665 4678888887753 22 12221 2455677778643332210
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~ 285 (621)
+...++.+++ + -.+++++++|+++|.+|.
T Consensus 148 -----------------------------~~~~~d~~~l---------------------~-~~i~~~t~lv~l~~~~n~ 176 (406)
T PRK09295 148 -----------------------------PDGTLQLETL---------------------P-ALFDERTRLLAITHVSNV 176 (406)
T ss_pred -----------------------------CCCCCCHHHH---------------------H-HhcCCCcEEEEEecchhc
Confidence 0000111111 1 125678999999999999
Q ss_pred ccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCc--e-
Q psy8733 286 DGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPT--V- 355 (621)
Q Consensus 286 tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~--~- 355 (621)
||+++|+ +++++|+++++|++|++|..|+|+++++ ++++|+||.+||+|+|++++++++++++.+.... .
T Consensus 177 tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~g~~~~ 256 (406)
T PRK09295 177 LGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMI 256 (406)
T ss_pred ccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchhcCCCEEEeehhhccCCCCcEEEEEchHhHhhCCCcccCCcee
Confidence 9999996 3467899999999999999999998875 9999999988999999999999998876542111 0
Q ss_pred --eeccc---ccc--CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 356 --FHFKI---NAD--NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 356 --ld~~~---~~~--~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
+++.. ... .+...+|||+.+++++.+|++++.+. |++++.++.+++++++++.|++++|+.+.
T Consensus 257 ~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~~~~~~~ 326 (406)
T PRK09295 257 ATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSAL-GLNNIAEYEQNLMHYALSQLESVPDLTLY 326 (406)
T ss_pred eeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 11100 001 12235799999999999999999998 89999999999999999999998776554
No 21
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.98 E-value=3.1e-30 Score=281.63 Aligned_cols=306 Identities=17% Similarity=0.205 Sum_probs=220.8
Q ss_pred cccchhccccccccchhhhhhccCCCCCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHH
Q psy8733 24 SLYLGNIIRNTYLDSRIHTTAMSSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQA 103 (621)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~ 103 (621)
+..+|...|..|+ .+..+. .+. +.+||++++++++|+.|++++.+++.++.....+- .++.+.++.+.++++|+
T Consensus 10 ~~~~~~~~r~~fp--~~~~~~-~~~-~~iyLd~a~~~~~p~~v~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~r~ 83 (424)
T PLN02855 10 SVSLGAETRPDFP--ILDQTV-NGS-KLVYLDNAATSQKPAAVLDALQDYYEEYNSNVHRG--IHALSAKATDAYELARK 83 (424)
T ss_pred HHHHHHHHHHhCc--hhcccc-CCC-CeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCc--cchHHHHHHHHHHHHHH
Confidence 3457777887777 221110 112 46999999999999999999999987765432110 12335677889999999
Q ss_pred HHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhcc---CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcCh
Q psy8733 104 ALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSM---NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGS 180 (621)
Q Consensus 104 ~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~---~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~ 180 (621)
.+++++|++++++|+|+ +|+|+ ++|++..++ .+++||+|+++.. .+ +.++
T Consensus 84 ~la~~~~~~~~~~v~~t-~g~t~-----al~~i~~~~~~~~~~~gd~vl~~~~----~~---~s~~-------------- 136 (424)
T PLN02855 84 KVAAFINASTSREIVFT-RNATE-----AINLVAYTWGLANLKPGDEVILSVA----EH---HSNI-------------- 136 (424)
T ss_pred HHHHHcCCCCCCEEEEe-CCHHH-----HHHHHHHHhhhhcCCCcCEEEECCC----cc---HHHH--------------
Confidence 99999999655589998 57898 788877654 4677888877653 11 1111
Q ss_pred HHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCcc
Q psy8733 181 WSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYV 260 (621)
Q Consensus 181 ~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~ 260 (621)
..|...+++.|...+..+.. +...++++++
T Consensus 137 --~~~~~~a~~~g~~v~~v~~~--------------------------------~~~~~~~~~l---------------- 166 (424)
T PLN02855 137 --VPWQLVAQKTGAVLKFVGLT--------------------------------PDEVLDVEQL---------------- 166 (424)
T ss_pred --HHHHHHHHHcCCEEEEEecC--------------------------------CCCCcCHHHH----------------
Confidence 12455677777643332210 0000111221
Q ss_pred CCCCccccCCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCC
Q psy8733 261 SIPDQSTWNRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPA 333 (621)
Q Consensus 261 ~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~ 333 (621)
++ .+++++++|+++|.++.||+++|+ +++++|+++++|++|++|..|+|+++++ ++++|+||++||+
T Consensus 167 -----~~-~i~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~ 240 (424)
T PLN02855 167 -----KE-LLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPT 240 (424)
T ss_pred -----HH-HhccCceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeecccccCCC
Confidence 01 245689999999999999999996 3567899999999999999999999875 8999999988999
Q ss_pred ccEEEEEchhHHhhhCCCCCc-------eeecccccc--CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q psy8733 334 GITVVIVREDLLEYALPITPT-------VFHFKINAD--NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSV 404 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~-------~ld~~~~~~--~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~ 404 (621)
|+|++++++++++++.+.... +.++..... .+...+||++.+++++.++++++.++ |++++++++.++++
T Consensus 241 G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~-g~~~i~~~~~~l~~ 319 (424)
T PLN02855 241 GIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEI-GMDRIHEYEVELGT 319 (424)
T ss_pred ccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence 999999999998877543110 111111111 12345899999999999999999999 89999999999999
Q ss_pred HHHHHHHccCCcccC
Q psy8733 405 LLYQEIDNSDKFYEC 419 (621)
Q Consensus 405 ~L~e~L~~~~g~~~~ 419 (621)
++++.|++++|+.+.
T Consensus 320 ~l~~~L~~~~g~~i~ 334 (424)
T PLN02855 320 YLYEKLSSVPGVRIY 334 (424)
T ss_pred HHHHHHhcCCCEEEe
Confidence 999999998777654
No 22
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.97 E-value=1.8e-29 Score=273.17 Aligned_cols=282 Identities=18% Similarity=0.181 Sum_probs=209.2
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccc-cHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHR-SADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shr-s~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
..+||++++.+++|++|++++.+++.++.... .+..|. +..+.+.++++|+.+++++|+++..+|+|+ +|+|+
T Consensus 19 ~~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~-~~~t~-- 92 (401)
T PRK10874 19 AGVYLDSAATALKPQAVIEATQQFYSLSAGNV---HRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWT-RGTTE-- 92 (401)
T ss_pred ceEEEeCCcccCCCHHHHHHHHHHHHhccCCC---CCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEE-CCHHH--
Confidence 47999999999999999999999997765331 112222 467889999999999999999545589987 56888
Q ss_pred hHHHHHHhhhcc---CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccc
Q psy8733 129 AAVAMNLISSSM---NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 129 ~a~alNlla~~~---~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
++|+++.++ .+++||+|+++.. .+ +.++. .|...+++.|...+.++..
T Consensus 93 ---~i~~~~~~~~~~~~~~gd~vl~~~~----~~---~s~~~----------------~~~~~~~~~g~~v~~v~~~--- 143 (401)
T PRK10874 93 ---SINLVAQSYARPRLQPGDEIIVSEA----EH---HANLV----------------PWLMVAQQTGAKVVKLPLG--- 143 (401)
T ss_pred ---HHHHHHHHhhhccCCCcCEEEECCc----ch---HHHHH----------------HHHHHHHHhCCEEEEEecC---
Confidence 788888776 4788888888764 22 11221 2455677778643332210
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~ 285 (621)
+...++++++ + -.+++++++|++||.++.
T Consensus 144 -----------------------------~~~~~d~~~l---------------------~-~~i~~~t~lv~i~~~~n~ 172 (401)
T PRK10874 144 -----------------------------ADRLPDVDLL---------------------P-ELITPRTRILALGQMSNV 172 (401)
T ss_pred -----------------------------CCCcCCHHHH---------------------H-HhcCcCcEEEEEeCCccc
Confidence 0000111111 1 135678999999999999
Q ss_pred ccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCC--ce-
Q psy8733 286 DGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITP--TV- 355 (621)
Q Consensus 286 tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P--~~- 355 (621)
||..+|+ +++++|+++++|++|++|..|+|+++++ ++++|+||.+||+|+|++++++++++++.+... ..
T Consensus 173 tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~ 252 (401)
T PRK10874 173 TGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLYGPTGIGVLYGKSELLEAMSPWQGGGKML 252 (401)
T ss_pred ccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhcCCCEEEEecccccCCCccEEEEEchHHHhcCCCeecCCcce
Confidence 9999996 4567899999999999999999998765 999999998899999999999999987754321 00
Q ss_pred --eeccccc--c--CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 356 --FHFKINA--D--NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 356 --ld~~~~~--~--~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
.++.... . .....+|||+.+++++.+|++++.+. |.+++.++++++++++++.|++++|+..
T Consensus 253 ~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~-g~~~~~~~~~~l~~~l~~~l~~~~g~~~ 320 (401)
T PRK10874 253 TEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADI-DINQAESWSRSLATLAEDALAKLPGFRS 320 (401)
T ss_pred EeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 1111100 1 12234799999999999999999998 8999999999999999999998876643
No 23
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.97 E-value=7.9e-29 Score=267.87 Aligned_cols=282 Identities=18% Similarity=0.185 Sum_probs=207.2
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCccccccc-ccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSH-RSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~sh-rs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
..+||++++.+++|++|++++.+++.++.... +...| .+.++.+.++++|+.+++++|+++..+|+|+ +|+|+
T Consensus 16 ~~iyld~a~~~~~p~~v~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t-~g~t~-- 89 (398)
T TIGR03392 16 GTVYLDSAATALKPQAVIDATQQFYRLSSGTV---HRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWT-RGTTE-- 89 (398)
T ss_pred CeEEeeCccccCCCHHHHHHHHHHHHhcCCCC---CCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEe-CChHH--
Confidence 46999999999999999999999986554322 11122 2456788999999999999999644589987 67899
Q ss_pred hHHHHHHhhhcc---CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccc
Q psy8733 129 AAVAMNLISSSM---NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 129 ~a~alNlla~~~---~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
++|++..++ .+++||+|++... .+ +.|+ ..|...+++.|...+..+..
T Consensus 90 ---~l~~~~~~~~~~~~~~gd~Vl~~~~----~~---~s~~----------------~~~~~~~~~~g~~v~~v~~~--- 140 (398)
T TIGR03392 90 ---SINLVAQSYARPRLQPGDEIIVSEA----EH---HANL----------------IPWLMVAQQTGAKVVKLPIG--- 140 (398)
T ss_pred ---HHHHHHHHhhhccCCCCCEEEECCc----ch---hHHH----------------HHHHHHHHHcCcEEEEEecC---
Confidence 788877766 4788888888754 22 1222 12455677778654333210
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~ 285 (621)
.+| .++++++ + -.+++++++|+++|..+.
T Consensus 141 ---------------------------~~~--~~~~~~l---------------------~-~~i~~~t~lv~i~~~~n~ 169 (398)
T TIGR03392 141 ---------------------------ADL--LPDIRQL---------------------P-ELLTPRTRILALGQMSNV 169 (398)
T ss_pred ---------------------------CCC--CcCHHHH---------------------H-HHhccCceEEEEECcccc
Confidence 000 0111111 1 125678999999999999
Q ss_pred ccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCc--ee
Q psy8733 286 DGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPT--VF 356 (621)
Q Consensus 286 tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~--~l 356 (621)
||..+|+ +++++|+++++|++|++|+.++|+++++ ++++|+||.+||+|+|++++++++++++.+.... +.
T Consensus 170 tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~ 249 (398)
T TIGR03392 170 TGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYGPTGIGVLYGKTELLEAMPPWQGGGKML 249 (398)
T ss_pred ccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEecccccCCCceEEEEEcHHHHhhCCCeecCCceE
Confidence 9999996 4568899999999999999999998765 8999999988999999999999998877542211 11
Q ss_pred ---ecccc--cc--CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 357 ---HFKIN--AD--NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 357 ---d~~~~--~~--~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
++... .+ .+...+|||+.+++++.++++++.+. |++++.++..++++++++.|++++|+..
T Consensus 250 ~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~-g~~~i~~~~~~l~~~l~~~l~~l~g~~~ 317 (398)
T TIGR03392 250 SHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDI-DIAAAEAWSVSLADLAEERLAQLPGFRS 317 (398)
T ss_pred eeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 11000 01 12234799999999999999999888 8999999999999999999998876643
No 24
>PLN02651 cysteine desulfurase
Probab=99.97 E-value=1.7e-29 Score=270.29 Aligned_cols=285 Identities=12% Similarity=0.064 Sum_probs=203.5
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
+||++||++++|++|++++.+++.++...+.+ +.+.++.++.+.++++|+.+++++|++++ +|+|+ +|+|+
T Consensus 1 iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~t-~~~t~----- 71 (364)
T PLN02651 1 LYLDMQATTPIDPRVLDAMLPFLIEHFGNPHS--RTHLYGWESEDAVEKARAQVAALIGADPK-EIIFT-SGATE----- 71 (364)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHHhCCCCCCh--hhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-CCHHH-----
Confidence 59999999999999999999998664332211 01234678899999999999999999754 78887 67888
Q ss_pred HHHHhhhcc---CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccccc
Q psy8733 132 AMNLISSSM---NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSI 208 (621)
Q Consensus 132 alNlla~~~---~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~ 208 (621)
++|++..++ -+++||+|++... .+ +. +...|... ++.|...+..+.
T Consensus 72 a~~~~l~~~~~~~~~~g~~vl~~~~----~h---~s----------------~~~~~~~~-~~~g~~v~~v~~------- 120 (364)
T PLN02651 72 SNNLAIKGVMHFYKDKKKHVITTQT----EH---KC----------------VLDSCRHL-QQEGFEVTYLPV------- 120 (364)
T ss_pred HHHHHHHHHHHhccCCCCEEEEccc----cc---HH----------------HHHHHHHH-HhcCCEEEEEcc-------
Confidence 566533221 1355666655432 11 11 11223323 355653322211
Q ss_pred CCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccc
Q psy8733 209 PDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGV 288 (621)
Q Consensus 209 ~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv 288 (621)
+|...++++++ + -.+++++++|+++|.++.||+
T Consensus 121 -------------------------~~~~~~d~~~l---------------------~-~~i~~~t~lv~v~~~~n~tG~ 153 (364)
T PLN02651 121 -------------------------KSDGLVDLDEL---------------------A-AAIRPDTALVSVMAVNNEIGV 153 (364)
T ss_pred -------------------------CCCCcCCHHHH---------------------H-HhcCCCcEEEEEECCCCCcee
Confidence 11111222221 0 135678999999999999999
Q ss_pred cccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceeecccc
Q psy8733 289 EFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKIN 361 (621)
Q Consensus 289 ~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~ 361 (621)
.+|+ +++++|++++||++|++|+.|+|+++++ ++++|+|||+||+|+|++++|+++++++.|. +..+ .
T Consensus 154 ~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~l~p~---~~g~--~ 228 (364)
T PLN02651 154 IQPVEEIGELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPL---MSGG--G 228 (364)
T ss_pred cccHHHHHHHHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechhhhCCCCceEEEEEcCCCCCCCCcc---ccCC--C
Confidence 9996 4568899999999999999999999976 9999999998899999999999988766442 2111 1
Q ss_pred ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc-cCCcccCcc-CCCCCCCCc
Q psy8733 362 ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN-SDKFYECPV-QAGCRSRMN 430 (621)
Q Consensus 362 ~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~-~~g~~~~~~-~~~~RS~~n 430 (621)
.+.+.+.+|||+.+++++.+||+++.+. .++++++++++++++++.|++ ++|+.+... +++.|++..
T Consensus 229 ~~~~~~~GT~~~~~~~~l~~al~~~~~~--~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i 297 (364)
T PLN02651 229 QERGRRSGTENTPLVVGLGAACELAMKE--MDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGT 297 (364)
T ss_pred ccCCccCCCccHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCE
Confidence 2234567999999999999999999874 599999999999999999986 677877643 445566543
No 25
>PLN02724 Molybdenum cofactor sulfurase
Probab=99.97 E-value=8e-29 Score=290.72 Aligned_cols=296 Identities=14% Similarity=0.174 Sum_probs=202.8
Q ss_pred ccCCCCCceeccCCCCCCCHHHH-HHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCC-CCEEEEEcC
Q psy8733 45 MSSAAHPVINFGAGPAKLPREVL-EEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPN-NYKILFLQG 122 (621)
Q Consensus 45 m~~~~~~~~lf~aGPs~~P~~Vl-ea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~-~yeI~f~~g 122 (621)
||.....+||++||.+++|+.++ +++.+++.++..+..+ .+..+....+.++++|+.++++||+++ +|+|+|+ .
T Consensus 29 fp~l~~~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s---~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFt-s 104 (805)
T PLN02724 29 FARLKGVVYLDHAGATLYSESQLEAALADFSSNVYGNPHS---QSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFT-S 104 (805)
T ss_pred hhhcCCCEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCc---CcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEe-C
Confidence 34443579999999999776554 4455565544333322 222356788899999999999999965 4578997 5
Q ss_pred CcchhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccc
Q psy8733 123 GGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKV 202 (621)
Q Consensus 123 ggT~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~ 202 (621)
|+|+ ++|+++.++.|++||+|+++.. .. ..++ .|.+.|++.|.....++..
T Consensus 105 naT~-----alnlva~~l~~~~gd~Iv~t~~----eH---~svl-----------------~~~~~a~~~G~~v~~v~~~ 155 (805)
T PLN02724 105 GATA-----ALKLVGETFPWSSESHFCYTLE----NH---NSVL-----------------GIREYALEKGAAAIAVDIE 155 (805)
T ss_pred ChHH-----HHHHHHHHCCCCCCCeEEEeec----cc---cchH-----------------HHHHHHHHcCCeEEeccch
Confidence 7899 8999999999999999998743 11 1111 1345667778643332210
Q ss_pred ccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCc--ccc----CCCCCceE
Q psy8733 203 SKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQ--STW----NRDPEASY 276 (621)
Q Consensus 203 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~--~~l----~i~~~t~~ 276 (621)
. +...+.....+++ ...++ +... +.+ ..++.+++
T Consensus 156 ~-----~~~~~~~~~g~~~-----------------~~~~~------------------l~~~~~~~l~~~~~~~~~t~L 195 (805)
T PLN02724 156 E-----AANQPTNSQGSVV-----------------VKSRG------------------LQRRNTSKLQKREDDGEAYNL 195 (805)
T ss_pred h-----ccccccccccccc-----------------cchhh------------------hhhhhhhhhccccccCCCcce
Confidence 0 0000000000000 00000 0000 000 12356789
Q ss_pred EEEecccccccccccc--c---cccC--------CCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEE
Q psy8733 277 LYYCDNETVDGVEFNY--I---PDSQ--------GIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIV 340 (621)
Q Consensus 277 V~~thnET~tGv~~p~--i---~~~~--------g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~liv 340 (621)
|+++|..+.+|+++|+ + .+.. +++++|||+|++|+.|+|+++++ ++++|+|||+| |.|+|+||+
T Consensus 196 Va~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G~G~L~v 275 (805)
T PLN02724 196 FAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPTGLGALLV 275 (805)
T ss_pred EEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCCCceEEEE
Confidence 9999999999999997 3 2221 36899999999999999999875 99999999998 999999999
Q ss_pred chhHHhhhCCCCCc--eee-------cc-cc--ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q psy8733 341 REDLLEYALPITPT--VFH-------FK-IN--ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 341 r~~ll~~~~~~~P~--~ld-------~~-~~--~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e 408 (621)
|+++++++.|.... ... +. .. .......+|||+.+|+++.+|++++.+. |++++.+|..++++++++
T Consensus 276 r~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~i-g~~~I~~~~~~L~~~l~~ 354 (805)
T PLN02724 276 RRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRL-TISAIAMHTWALTHYVAN 354 (805)
T ss_pred ehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHH
Confidence 99998877653221 000 00 00 0122345899999999999999999999 899999999999999999
Q ss_pred HHHccC
Q psy8733 409 EIDNSD 414 (621)
Q Consensus 409 ~L~~~~ 414 (621)
.|.+++
T Consensus 355 ~L~~l~ 360 (805)
T PLN02724 355 SLRNLK 360 (805)
T ss_pred HHHhcc
Confidence 999875
No 26
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.96 E-value=4.3e-28 Score=257.46 Aligned_cols=266 Identities=23% Similarity=0.323 Sum_probs=198.2
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHH
Q psy8733 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVA 132 (621)
Q Consensus 53 ~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~a 132 (621)
.||+|||.++|++|++++.+.+ .+||++.+.++++++|+.+++++|+++.+.++++ +|||+ +
T Consensus 1 ~~~~~~~~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~-~~~t~-----a 62 (356)
T cd06451 1 LLLIPGPSNVPPRVLKAMNRPM------------LGHRSPEFLALMDEILEGLRYVFQTENGLTFLLS-GSGTG-----A 62 (356)
T ss_pred CcccCCCcCCCHHHHHHhCCCc------------cCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEe-cCcHH-----H
Confidence 4899999999999999997543 3688889999999999999999999655455554 77898 3
Q ss_pred HHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCC
Q psy8733 133 MNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQS 212 (621)
Q Consensus 133 lNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~ 212 (621)
+++ ++.+++.+|+++++...++|+..|...+++.|...+..+..
T Consensus 63 l~~--------------------------~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---------- 106 (356)
T cd06451 63 MEA--------------------------ALSNLLEPGDKVLVGVNGVFGDRWADMAERYGADVDVVEKP---------- 106 (356)
T ss_pred HHH--------------------------HHHHhCCCCCEEEEecCCchhHHHHHHHHHhCCCeEEeecC----------
Confidence 443 33445566666666666777765667778888643332210
Q ss_pred CCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCC-CceEEEEeccccccccccc
Q psy8733 213 TWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP-EASYLYYCDNETVDGVEFN 291 (621)
Q Consensus 213 ~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~-~t~~V~~thnET~tGv~~p 291 (621)
.+| .+++|++ +. .+++ ++++|++++.+|.+|...|
T Consensus 107 --------------------~~~--~~~~~~l---------------------~~-~i~~~~~~~v~i~~~~~~~G~~~~ 142 (356)
T cd06451 107 --------------------WGE--AVSPEEI---------------------AE-ALEQHDIKAVTLTHNETSTGVLNP 142 (356)
T ss_pred --------------------CCC--CCCHHHH---------------------HH-HHhccCCCEEEEeccCCCcccccC
Confidence 000 1112221 01 2344 7899999999999999998
Q ss_pred c-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEchhHHhhhCC---CCCceeeccc
Q psy8733 292 Y-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVREDLLEYALP---ITPTVFHFKI 360 (621)
Q Consensus 292 ~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~~ll~~~~~---~~P~~ld~~~ 360 (621)
+ +++++|+++++|+++++|..++++.+++ +++.|+||++| |+|+|++++++++++++.. ..+.+++...
T Consensus 143 ~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (356)
T cd06451 143 LEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLL 222 (356)
T ss_pred HHHHHHHHHhcCCEEEEeeehhccCccccccccCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHH
Confidence 6 4568899999999999999999998765 88899999996 8999999999999887753 1223333221
Q ss_pred c---ccCC-CccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 361 N---ADNN-SVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 361 ~---~~~~-s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
. .... ..-+||++..++++.++++++.+. |++.+.++.+++++++++.|+++ |+..
T Consensus 223 ~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 282 (356)
T cd06451 223 LLKYWGEGYSYPHTPPVNLLYALREALDLILEE-GLENRWARHRRLAKALREGLEAL-GLKL 282 (356)
T ss_pred HHhhhcccCCCCCCChHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence 1 1111 345799999999999999999987 89999999999999999999987 4544
No 27
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.96 E-value=2.3e-27 Score=254.58 Aligned_cols=272 Identities=14% Similarity=0.114 Sum_probs=194.1
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
+||+++|.+++|++|++++.+++.++.+.+. ..+|++.++.++++++|+.+++++|++.+ +|+|+ +|+|+
T Consensus 1 ~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~i~~t-~~~t~----- 70 (379)
T TIGR03402 1 IYLDNNATTRVDPEVLEAMLPYFTEYFGNPS---SMHSFGGEVGKAVEEAREQVAKLLGAEPD-EIIFT-SGGTE----- 70 (379)
T ss_pred CcCCCcCCCCCCHHHHHHHHHHHHhcCCCCC---cccHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-CcHHH-----
Confidence 5999999999999999999999876543332 25667888999999999999999999754 78887 57899
Q ss_pred HHHHhhhcc--CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 132 AMNLISSSM--NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 132 alNlla~~~--~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
++|++..++ .+++||+|++... .| +.+. . ....+++.|...+..+.
T Consensus 71 a~~~al~~~~~~~~~~~~vv~~~~----~~---~s~~----------------~-~~~~~~~~G~~v~~v~~-------- 118 (379)
T TIGR03402 71 SDNTAIKSALAAQPEKRHIITTAV----EH---PAVL----------------S-LCQHLEKQGYKVTYLPV-------- 118 (379)
T ss_pred HHHHHHHHHHHhcCCCCeEEEccc----cc---HHHH----------------H-HHHHHHHcCCEEEEEcc--------
Confidence 444433221 1244555555432 11 1111 1 11233446654332221
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
++...++++++ + -.+++++++|+++|.+|.+|+.
T Consensus 119 ------------------------~~~g~~~~~~l---------------------~-~~i~~~~~lv~i~~~~n~tG~~ 152 (379)
T TIGR03402 119 ------------------------DEEGRLDLEEL---------------------R-AAITDDTALVSVMWANNETGTI 152 (379)
T ss_pred ------------------------CCCCcCCHHHH---------------------H-HhcCCCcEEEEEEcccCCeeec
Confidence 00001222221 1 1245789999999999999999
Q ss_pred ccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccc
Q psy8733 290 FNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINA 362 (621)
Q Consensus 290 ~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~ 362 (621)
+|+ +++++|+++++|++|++|+.|+|+++++ ++++|+||++||+|+|+++++++.. + .|.+.. ...
T Consensus 153 ~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~g~l~v~~~~~--~---~p~~~g--~~~ 225 (379)
T TIGR03402 153 FPIEEIGEIAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKLHGPKGVGALYIRKGTR--F---RPLLRG--GHQ 225 (379)
T ss_pred ccHHHHHHHHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHHcCCCCceEEEEECCCCC--C---CCcccC--Ccc
Confidence 996 4568899999999999999999999865 9999999977899999999998752 2 232211 112
Q ss_pred cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc-cCCcccCc
Q psy8733 363 DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN-SDKFYECP 420 (621)
Q Consensus 363 ~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~-~~g~~~~~ 420 (621)
+...+.+|||+.+++++.++++++.+ +++.+.++.+++.+++++.|.+ ++++.+..
T Consensus 226 ~~~~~~gt~~~~~~~~l~~al~~~~~--~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 282 (379)
T TIGR03402 226 ERGRRAGTENVPGIVGLGKAAELATE--HLEEENTRVRALRDRLEAGLLARIPDARLNG 282 (379)
T ss_pred CCCcCCCCccHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHhhCCCEEEeC
Confidence 23345789999999999999999976 5899999999999999999985 77665543
No 28
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.96 E-value=1.1e-26 Score=248.08 Aligned_cols=275 Identities=15% Similarity=0.194 Sum_probs=190.9
Q ss_pred ceeccCCCC-CCCHHHHHHHHHHHHhhcc-CCCcccccccc-cHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 52 VINFGAGPA-KLPREVLEEVKETLLDYES-TGISVMEMSHR-SADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 52 ~~lf~aGPs-~~P~~Vlea~~~~l~~~~~-~g~sv~e~shr-s~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
+||++++.. +.|+.|++++.+.+.++.. .+.+ .++ .....+.++++|+.+++++|+++..+|+|+ +|+|+
T Consensus 1 ~yld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~-~g~t~-- 73 (376)
T TIGR01977 1 IYFDNAATTYPKPDEVYEAMADFYKNYGGSPGRG----RYRLALRASREVEETRQLLAKLFNAPSSAHVVFT-NNATT-- 73 (376)
T ss_pred CCccCcccCCCCCHHHHHHHHHHHHhcCCCCCcc----cchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEe-CCHHH--
Confidence 588988866 7999999999998876542 1111 122 234568899999999999999765578887 56888
Q ss_pred hHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHH--HHHHHHHHHhCCceeeeccccccc
Q psy8733 129 AAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWS--KKAAAEAEKYGKVNLVIPKVSKYV 206 (621)
Q Consensus 129 ~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~--~~~~~~a~~~G~~~~~~~~~~~~~ 206 (621)
+++++..+ -+++||+|++. ..++.+ ..|...++.+|...+..+.
T Consensus 74 ---al~~~~~~-~~~~gd~vl~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~~v~~----- 119 (376)
T TIGR01977 74 ---ALNIALKG-LLKEGDHVITT-------------------------PMEHNSVARPLECLKEQIGVEITIVKC----- 119 (376)
T ss_pred ---HHHHHHHh-ccCCCCEEEEC-------------------------cchhhHHHHHHHHHHHHcCcEEEEEec-----
Confidence 34443222 13444444443 222222 2344566666754332211
Q ss_pred ccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccc
Q psy8733 207 SIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVD 286 (621)
Q Consensus 207 ~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~t 286 (621)
++...++++++ + -.+++++++|++++.+|.|
T Consensus 120 ---------------------------~~~~~~d~~~l---------------------~-~~~~~~~~~v~~~~~~n~t 150 (376)
T TIGR01977 120 ---------------------------DNEGLISPERI---------------------K-RAIKTNTKLIVVSHASNVT 150 (376)
T ss_pred ---------------------------CCCCCcCHHHH---------------------H-HhcCCCCeEEEEECCCCCc
Confidence 01111122221 0 1245689999999999999
Q ss_pred cccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCCCC---c-
Q psy8733 287 GVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPITP---T- 354 (621)
Q Consensus 287 Gv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~~P---~- 354 (621)
|...|+ +++++|+++|+|+++++|..++|+++++ ++++|+|||+ ||+|+|+++++++.. +.+... .
T Consensus 151 G~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~--~~~~~~~~~~~ 228 (376)
T TIGR01977 151 GTILPIEEIGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGIK--LKPLKSGGTGS 228 (376)
T ss_pred cccCCHHHHHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEecccccccCCCCceEEEEcCCcC--cCceecCCCcc
Confidence 999995 4568899999999999999999998875 9999999999 599999999999862 222111 0
Q ss_pred ---eeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 355 ---VFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 355 ---~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
+++.......+...+||++..++++.++++++.++ |++++.+|++++++++++.|.+.+|+.+.
T Consensus 229 ~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~l~~~~~~~l~~~~~~~~~ 295 (376)
T TIGR01977 229 HSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKI-GIANIAKKECMLTEKLLNGLREINKVKIY 295 (376)
T ss_pred ccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence 11111111112345799999999999999999998 99999999999999999999988877654
No 29
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.96 E-value=1.6e-26 Score=249.95 Aligned_cols=283 Identities=17% Similarity=0.183 Sum_probs=203.6
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccc-cHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHR-SADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shr-s~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
..+||++++.+++|+.|++++.+++.+......+ -.|. +.++.+.++++|+.+++++|+++..+|+|+ +|+|+
T Consensus 18 ~~~yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~-~g~t~-- 91 (403)
T TIGR01979 18 PLVYLDSAATSQKPQQVIDAVAEYYRNSNANVHR---GIHTLSVRATEAYEAVREKVAKFINAASDEEIVFT-RGTTE-- 91 (403)
T ss_pred ceEEEeCccccCCCHHHHHHHHHHHHhCCCCCCC---CccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEe-CCHHH--
Confidence 4599999999999999999999887654332211 1222 456788999999999999999843478887 56888
Q ss_pred hHHHHHHhhhcc---CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccc
Q psy8733 129 AAVAMNLISSSM---NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 129 ~a~alNlla~~~---~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
++|+++.++ .+++||+|++... .+ +.+. ..|...+++.|...+..+..
T Consensus 92 ---~l~~~~~~~~~~~~~~g~~vl~~~~----~~---~s~~----------------~~~~~~~~~~g~~~~~v~~~--- 142 (403)
T TIGR01979 92 ---SINLVAYSWGDSNLKAGDEIVISEM----EH---HANI----------------VPWQLLAERTGATLKFIPLD--- 142 (403)
T ss_pred ---HHHHHHHHhhhhcCCCCCEEEECcc----hh---hHHH----------------HHHHHHHHhcCcEEEEEecC---
Confidence 677776654 3577888777653 11 1111 12445566677543332210
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~ 285 (621)
+.-.++.+++ + -.+++++++|+++|.+|.
T Consensus 143 -----------------------------~~~~~~~~~l---------------------~-~~i~~~~~lv~~~~~~~~ 171 (403)
T TIGR01979 143 -----------------------------DDGTLDLDDL---------------------E-KLLTEKTKLVAITHVSNV 171 (403)
T ss_pred -----------------------------CCCCCCHHHH---------------------H-HHhccCCeEEEEEccccc
Confidence 0000111111 0 124678999999999999
Q ss_pred ccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCc--e-
Q psy8733 286 DGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPT--V- 355 (621)
Q Consensus 286 tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~--~- 355 (621)
+|+..|+ +++++|+++++|+++++|..|+|+.+++ ++++|.||++||+|+|++++++++++++.+.... .
T Consensus 172 tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~g~~~~ 251 (403)
T TIGR01979 172 LGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELLEQMPPFLGGGEMI 251 (403)
T ss_pred ccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCccccCCCEEEEecccccCCCCceEEEEchHHHhcCCCeecCCCce
Confidence 9999996 3567899999999999999999998865 9999999999999999999999988776542111 0
Q ss_pred --eec--ccccc--CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 356 --FHF--KINAD--NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 356 --ld~--~~~~~--~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
.+. ..... .....+||++..++++.++++++.+. |++++.++..++++++++.|++++|+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~-g~~~~~~~~~~l~~~l~~~l~~~~g~~~~ 320 (403)
T TIGR01979 252 AEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAI-GLENIEAHEHELTAYALERLGEIPGLRIY 320 (403)
T ss_pred eecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 000 00000 11223799999999999999999988 89999999999999999999998777664
No 30
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.95 E-value=6.1e-26 Score=246.37 Aligned_cols=284 Identities=16% Similarity=0.119 Sum_probs=198.4
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccc-cHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHR-SADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shr-s~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
.++||+++|++++|++|++++.+++..+...+. ...|. +....+.++++|+.+++++|++.+ +|+|+ +|+|+
T Consensus 3 ~~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~~-~g~t~-- 75 (402)
T TIGR02006 3 LPIYLDYAATTPVDPRVAEKMMPYLTEKFGNPA---SRSHSFGWEAEEAVENARNQVAELIGADSR-EIVFT-SGATE-- 75 (402)
T ss_pred ccEEeeCCcCCCCCHHHHHHHHHHHHhcCCCCC---hhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-CCHHH--
Confidence 468999999999999999999998855432211 11221 223457899999999999999764 78887 67898
Q ss_pred hHHHHHHhhhcc---CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccc
Q psy8733 129 AAVAMNLISSSM---NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 129 ~a~alNlla~~~---~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
++|++..++ .+++||+|++... .+.+ +. . ....+++.|...+.++.
T Consensus 76 ---a~~~~l~~l~~~~~~~g~~Vi~~~~----~h~s---~~----------------~-~~~~~~~~g~~v~~v~~---- 124 (402)
T TIGR02006 76 ---SNNLAIKGIAHFYKSKGNHIITSKT----EHKA---VL----------------D-TCRYLEREGFEVTYLPP---- 124 (402)
T ss_pred ---HHHHHHHHHHHhhcCCCCEEEECCC----ccHH---HH----------------H-HHHHHHhcCCEEEEEcc----
Confidence 555544333 2356777766643 2211 11 1 11233455654332221
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~ 285 (621)
++...++++++ + -.+++++++|+++|.+|.
T Consensus 125 ----------------------------~~~~~~d~~~l---------------------~-~~l~~~~~lv~v~~~~n~ 154 (402)
T TIGR02006 125 ----------------------------KSNGLIDLEEL---------------------K-AAIRDDTILVSIMHVNNE 154 (402)
T ss_pred ----------------------------CCCCcCCHHHH---------------------H-HhcCCCCEEEEEECCCcC
Confidence 00101122221 0 124567899999999999
Q ss_pred ccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceeec
Q psy8733 286 DGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHF 358 (621)
Q Consensus 286 tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~ 358 (621)
+|+..|+ +++++|+++++|++|++|+.|+|+++++ ++++|+||++||+|+|+++++++...++.+.. ..
T Consensus 155 tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~----~g 230 (402)
T TIGR02006 155 IGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIYGPKGIGALYVRRKPRVRLEALI----HG 230 (402)
T ss_pred ceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhcCCCceEEEEEccCCCCCCCcee----cC
Confidence 9999996 4567899999999999999999999875 99999999999999999999988765543321 11
Q ss_pred cccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCC
Q psy8733 359 KINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRM 429 (621)
Q Consensus 359 ~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~ 429 (621)
.. ...+...+|||+..++++.++++++.+ +++.+.++.+++++++++.|++++++.+.. ++..|.|.
T Consensus 231 ~~-~~~~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~-~~~~~~p~ 297 (402)
T TIGR02006 231 GG-HERGMRSGTLPTHQIVGMGEAFRIAKE--EMAQDTAHVLALRDRLLNGIKSIEEVYLNG-DLEHRVPG 297 (402)
T ss_pred CC-ccCCccCCCccHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhcCCCEEEeC-CccccCCC
Confidence 11 122345689999999999999999975 699999999999999999999888765543 23445554
No 31
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=99.95 E-value=2.8e-26 Score=246.75 Aligned_cols=281 Identities=14% Similarity=0.052 Sum_probs=195.6
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
+||+++|.+++|++|++++.+++.++..+..+. +..+......++++++.+.+.+++.+..+|+|+ +|+|+
T Consensus 1 ~yld~aa~~~~~~~v~~~~~~~~~~~~~n~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t-~g~te----- 71 (382)
T TIGR03403 1 VYLDNNATTMLDPKVKELMDPFFCDIYGNPNSL---HQFGTATHPAIAEALDKLYKGINARDLDDIIIT-SCATE----- 71 (382)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHHhcCcCCccc---cHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEe-CCHHH-----
Confidence 599999999999999999999987754433332 122334567899999999999998434489987 56898
Q ss_pred HHHHhhhccCC----CC-CceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccc
Q psy8733 132 AMNLISSSMNV----PN-NYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYV 206 (621)
Q Consensus 132 alNlla~~~~~----~~-gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~ 206 (621)
++|++..++.+ ++ +|+|+++.. .+ +. +..-| ..++++|...+.++..
T Consensus 72 al~~~~~~~~~~~~~~~~~~~vi~~~~----e~---ps----------------~~~~~-~~~~~~G~~v~~v~~~---- 123 (382)
T TIGR03403 72 SNNWVLKGVYFDEILKGGKNHIITTEV----EH---PA----------------VRATC-AFLESLGVEVTYLPIN---- 123 (382)
T ss_pred HHHHHHHHHHHhhcccCCCCEEEEcCC----cc---HH----------------HHHHH-HHHHHCCCEEEEEecC----
Confidence 67776554321 22 345555432 11 11 11212 3445667543322210
Q ss_pred ccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccc
Q psy8733 207 SIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVD 286 (621)
Q Consensus 207 ~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~t 286 (621)
+...++.+.+ + -.+++++++|.++|.+|.|
T Consensus 124 ----------------------------~~g~~d~~~l---------------------~-~~i~~~t~lv~~~~~~n~t 153 (382)
T TIGR03403 124 ----------------------------EQGTITAEQV---------------------R-EAITEKTALVSVMWANNET 153 (382)
T ss_pred ----------------------------CCCCCCHHHH---------------------H-HhcccCCeEEEEEcccCCC
Confidence 0000111111 0 1346678999999999999
Q ss_pred cccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceeecc
Q psy8733 287 GVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFK 359 (621)
Q Consensus 287 Gv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~ 359 (621)
|+.+|+ +++++|+++++|++|++|+.|+|+.+++ ++++|+||++||+|+|++++|++. .+ .|.+.. .
T Consensus 154 G~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~g~l~vr~~~--~~---~p~~~g-~ 227 (382)
T TIGR03403 154 GMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRKGV--EL---TPLFHG-G 227 (382)
T ss_pred ccccCHHHHHHHHHHcCCEEEEechhhcCCCccCccccCCCEEEEcchhhCCCCceEEEEECCCC--CC---CCcccC-C
Confidence 999996 3467899999999999999999999865 999999999999999999999875 12 232111 1
Q ss_pred ccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCC
Q psy8733 360 INADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRM 429 (621)
Q Consensus 360 ~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~ 429 (621)
......+.+|||+.+++++.++++++.+ +++.+.++.++++++++++|.+++|+.+... .+.|++.
T Consensus 228 -~~~~~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~-~~~~~~~ 293 (382)
T TIGR03403 228 -EHMGGRRSGTLNVPYIVAMGEAMRLANE--YLDFEKSHVRRLRDRLEDALLELPDVFVVGD-REHRVPN 293 (382)
T ss_pred -CCCCCcccCCcChHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhcCCCEEEECC-CCCCcCC
Confidence 1122355799999999999999998876 4899999999999999999999887765442 2345553
No 32
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.95 E-value=2e-26 Score=250.47 Aligned_cols=278 Identities=15% Similarity=0.178 Sum_probs=184.9
Q ss_pred CCCceeccCCCCCCCHHHHHHHHHHHHhhccCCCccccccccc--HHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcch
Q psy8733 49 AHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRS--ADYTKINNDTQAALRELLNVPNNYKILFLQGGGTG 126 (621)
Q Consensus 49 ~~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs--~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~ 126 (621)
.+.+||++++.+++|+.|.+++.+++..|...+.+ +|.. ..+..+.++.++ + +++|++.+ +|+|+ +|+|+
T Consensus 26 ~~~iyld~~a~g~~p~~v~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~-~l~g~~~~-~v~~~-~~~t~ 97 (406)
T TIGR01814 26 NAVIYLDGNSLGLMPKAARNALKEELDKWAKIAIR----GHNTGKAPWFTLDESLLK-L-RLVGAKED-EVVVM-NTLTI 97 (406)
T ss_pred CCcEEecCCCcCcCcHHHHHHHHHHHHHHHHhhhc----cCccCCCChhhhhhhhcc-c-cccCCCCC-cEEEe-CCchH
Confidence 35799998888899999999999988777643321 1211 123344444444 5 89999754 79987 56888
Q ss_pred hhhHHHHHHhhhccCCCCC---ceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccc
Q psy8733 127 MFAAVAMNLISSSMNVPNN---YKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVS 203 (621)
Q Consensus 127 ~~~a~alNlla~~~~~~~g---d~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~ 203 (621)
++|+++.++ ++++ ++|++... .|.+ ++ ..|...+++.|...+...
T Consensus 98 -----~l~~~~~~~-~~~~~~~~~i~~~~~----~~~s---~~----------------~~~~~~~~~~g~~~~~~~--- 145 (406)
T TIGR01814 98 -----NLHLLLASF-YKPTPKRYKILLEAK----AFPS---DH----------------YAIESQLQLHGLTVEESM--- 145 (406)
T ss_pred -----HHHHHHHHh-cCCcCCccEEEecCC----CCCh---HH----------------HHHHHHHHhcCCCcccce---
Confidence 677766554 3332 24444432 2221 11 113334566675321000
Q ss_pred cccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCcccc-CCCCCceEEEEecc
Q psy8733 204 KYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW-NRDPEASYLYYCDN 282 (621)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l-~i~~~t~~V~~thn 282 (621)
.+ +...+...++++.+ .+.+ +.++++++|+++|+
T Consensus 146 -----------------~~--------~~~~~~g~~~~~~l--------------------~~~~~~~~~~t~lv~~~~v 180 (406)
T TIGR01814 146 -----------------VQ--------IEPREEETLRLEDI--------------------LDTIEKNGDDIAVILLSGV 180 (406)
T ss_pred -----------------EE--------eccCCCCccCHHHH--------------------HHHHHhcCCCeEEEEEecc
Confidence 00 00000000111111 0111 23578999999999
Q ss_pred cccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCCCCc
Q psy8733 283 ETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPITPT 354 (621)
Q Consensus 283 ET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~~P~ 354 (621)
++.+|+.+|+ +++++|++++||++|++|+.|+|++++| ++++|+|||+ ||+| |+++++++.++++.|..+.
T Consensus 181 ~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK~l~g~pG-~~l~v~~~~~~~~~p~~~g 259 (406)
T TIGR01814 181 QYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAGPG-AGAFVHEKHAHTERPRLAG 259 (406)
T ss_pred ccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEcCccccCCCCC-eEEEEehhhhhhcCCCCCc
Confidence 9999999997 4568899999999999999999999875 9999999999 5889 8899888776555553332
Q ss_pred eeec------c-----ccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 355 VFHF------K-----INADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 355 ~ld~------~-----~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
++.. . ...+.+.+.+|||+.+++++.+||+++.+. |++++.++..++++++++.|.++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~ 328 (406)
T TIGR01814 260 WWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQA-GMEALRKKSLLLTDYLEELIKAR 328 (406)
T ss_pred ccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHhh
Confidence 2110 0 011223456899999999999999999998 89999999999999999999875
No 33
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.95 E-value=1.3e-25 Score=242.08 Aligned_cols=279 Identities=14% Similarity=0.134 Sum_probs=200.7
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
++||+++|++++|++|++++.+++..+.....+ .++.+..+.++++++|+.+++++|++++ +|+|+ +|+|+
T Consensus 18 ~~yl~~~~~~~~p~~v~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~ia~~~~~~~~-~v~~~-~~~t~---- 88 (397)
T TIGR01976 18 RVFFDNPAGTQIPQSVADAVSAALTRSNANRGG---AYESSRRADQVVDDAREAVADLLNADPP-EVVFG-ANATS---- 88 (397)
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhcCCCCCC---CchHHHHHHHHHHHHHHHHHHHcCCCCC-eEEEe-CCHHH----
Confidence 599999999999999999999998665321111 2344556778999999999999999765 68876 67888
Q ss_pred HHHHHhhhcc--CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHH--HHHHHHHHHhCCceeeeccccccc
Q psy8733 131 VAMNLISSSM--NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWS--KKAAAEAEKYGKVNLVIPKVSKYV 206 (621)
Q Consensus 131 ~alNlla~~~--~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~--~~~~~~a~~~G~~~~~~~~~~~~~ 206 (621)
++|++...+ .+++||+|++.. .++++ ..|...+++.|...+..+..
T Consensus 89 -~l~~~~~~~~~~~~~gd~vl~~~-------------------------~~~~s~~~~~~~~~~~~g~~~~~~~~~---- 138 (397)
T TIGR01976 89 -LTFLLSRAISRRWGPGDEVIVTR-------------------------LDHEANISPWLQAAERAGAKVKWARVD---- 138 (397)
T ss_pred -HHHHHHHHHHhcCCCCCEEEEcC-------------------------CchHhHHHHHHHHHHhcCCEEEEEecc----
Confidence 566544333 245566555543 33333 23556677778653332210
Q ss_pred ccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccc
Q psy8733 207 SIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVD 286 (621)
Q Consensus 207 ~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~t 286 (621)
+. .| .++++.+ + -.+++++++|.++|.+|.+
T Consensus 139 -------~~------------------~~--~~~~~~l---------------------~-~~i~~~~~lv~i~~~~n~t 169 (397)
T TIGR01976 139 -------EA------------------TG--ELHPDDL---------------------A-SLLSPRTRLVAVTAASNTL 169 (397)
T ss_pred -------cc------------------CC--CcCHHHH---------------------H-HhcCCCceEEEEeCCCCCC
Confidence 00 00 0111111 0 1245689999999999999
Q ss_pred cccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceeecc
Q psy8733 287 GVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFK 359 (621)
Q Consensus 287 Gv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~ 359 (621)
|...|+ +++++|+++++|+++++|..++|+.+++ ++++|+|||+||+ +|++++++++++++.+....+ .+.
T Consensus 170 G~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~-~G~l~~~~~~~~~l~~~~~~~-~~~ 247 (397)
T TIGR01976 170 GSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFFGPH-MGILWGRPELLMNLPPYKLTF-SYD 247 (397)
T ss_pred CccCCHHHHHHHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechhhcCCc-eEEEEEcHHHHhhCCCccccC-ccC
Confidence 999996 4567899999999999999999998876 8889999999975 899999999988876543222 122
Q ss_pred ccccCCCccCCchHHHHHHHHHHHHHHHhhC-------------CHHHHHHHHHHHHHHHHHHHHccCCcccCc
Q psy8733 360 INADNNSVYNTPPTFVVHVIQRVFAWIKRQG-------------GLAKMEQNSLQKSVLLYQEIDNSDKFYECP 420 (621)
Q Consensus 360 ~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~g-------------Gl~~i~~r~~~la~~L~e~L~~~~g~~~~~ 420 (621)
.... ....+|||+..++++.+|++++.+.| +++.+.+|+.++++++++.|.+++++.+..
T Consensus 248 ~~~~-~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~ 320 (397)
T TIGR01976 248 TGPE-RFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYG 320 (397)
T ss_pred CCcc-hhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence 2111 23348999999999999999998884 278889999999999999999887666543
No 34
>PRK02948 cysteine desulfurase; Provisional
Probab=99.95 E-value=2e-25 Score=239.77 Aligned_cols=265 Identities=15% Similarity=0.118 Sum_probs=186.9
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
+||+++|.+++|++|++++.+++.++.+...+. +..+..+.++++++|+.+++++|++++ +|+|+ +|+|++
T Consensus 2 ~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~r~~la~~~g~~~~-~i~~~-~g~t~a---- 72 (381)
T PRK02948 2 IYLDYAATTPMSKEALQTYQKAASQYFGNESSL---HDIGGTASSLLQVCRKTFAEMIGGEEQ-GIYFT-SGGTES---- 72 (381)
T ss_pred EeccCCCCCCCCHHHHHHHHHHHHhcCCCCccc---cHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-CcHHHH----
Confidence 699999999999999999999887654433332 223456788999999999999998654 78886 678883
Q ss_pred HHHHhhhcc-C--CCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHH-HHHHHHHHHhCCceeeecccccccc
Q psy8733 132 AMNLISSSM-N--VPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWS-KKAAAEAEKYGKVNLVIPKVSKYVS 207 (621)
Q Consensus 132 alNlla~~~-~--~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~-~~~~~~a~~~G~~~~~~~~~~~~~~ 207 (621)
++++...+ . .++||+|++... .+.+ ..+...+++.|......+..
T Consensus 73 -~~~~~~~~~~~~~~~g~~vv~~~~-------------------------~h~s~~~~~~~~~~~g~~v~~v~~~----- 121 (381)
T PRK02948 73 -NYLAIQSLLNALPQNKKHIITTPM-------------------------EHASIHSYFQSLESQGYTVTEIPVD----- 121 (381)
T ss_pred -HHHHHHHHHHhccCCCCEEEECCc-------------------------ccHHHHHHHHHHHhCCCEEEEEeeC-----
Confidence 43322211 1 234555554432 1111 11223456667543322210
Q ss_pred cCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccc
Q psy8733 208 IPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 287 (621)
Q Consensus 208 ~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tG 287 (621)
+...++++.+ +. .+.+++++|+++|.+|.||
T Consensus 122 ---------------------------~~~~~d~~~l---------------------~~-~l~~~~~lv~~~~~~n~tG 152 (381)
T PRK02948 122 ---------------------------KSGLIRLVDL---------------------ER-AITPDTVLASIQHANSEIG 152 (381)
T ss_pred ---------------------------CCCCCCHHHH---------------------HH-hcCCCCEEEEEECCcCCcE
Confidence 0001111111 11 2456789999999999999
Q ss_pred ccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccc
Q psy8733 288 VEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKI 360 (621)
Q Consensus 288 v~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~ 360 (621)
...|+ +++++|+++++|++|++|..|+|+++++ ++++|+||++||+|+|++++++++. +.+..+. .
T Consensus 153 ~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~--~~~~~~~-----~ 225 (381)
T PRK02948 153 TIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIYGPKGVGAVYINPQVR--WKPVFPG-----T 225 (381)
T ss_pred eehhHHHHHHHHHHcCCEEEEEChhhccccccCcccCCCCEEEecHHhcCCCCcEEEEEEcCCCC--CCCcccC-----C
Confidence 99996 4567899999999999999999999886 9999999999999999999998751 1111110 1
Q ss_pred cccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 361 NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 361 ~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
....+..++|||+++++++.++++++.+ +++++.++.+++++++++.|.+++
T Consensus 226 ~~~~~~~~~t~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~ 277 (381)
T PRK02948 226 THEKGFRPGTVNVPGIAAFLTAAENILK--NMQEESLRFKELRSYFLEQIQTLP 277 (381)
T ss_pred CCCCCcCCCCccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1123456789999999999999999875 489999999999999999999875
No 35
>KOG1549|consensus
Probab=99.94 E-value=3.1e-26 Score=244.81 Aligned_cols=274 Identities=18% Similarity=0.159 Sum_probs=201.8
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
+.+|+++..++|+|+.|+++|..++..+.+++.+ . -.+-+..+.+++||+.+++|+|+.+. +|+|+ +|||+
T Consensus 43 ~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~---~-~y~w~~~~~~E~aR~~VAklInAd~~-dIiFt-s~ATE--- 113 (428)
T KOG1549|consen 43 RPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHS---R-SYGWKAEDAVEAAREQVAKLINADPS-DIVFT-SGATE--- 113 (428)
T ss_pred ccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCc---c-ccchhhhHHHHHHHHHHHHHhCCCCC-cEEEe-CCchH---
Confidence 5799999999999999999999999988876533 2 11345667799999999999999776 59997 77999
Q ss_pred HHHHHHhhhccCCCCCc----eeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccc
Q psy8733 130 AVAMNLISSSMNVPNNY----KILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 130 a~alNlla~~~~~~~gd----~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
++|++..++.|..+| .|+.++. +. .+.. + +.+..+..|.
T Consensus 114 --s~Nlvl~~v~~~~~~~~~k~iitl~~----eH----~~v~-------------~---s~~~l~~~g~----------- 156 (428)
T KOG1549|consen 114 --SNNLVLKGVARFFGDKTKKHIITLQT----EH----PCVL-------------D---SCRALQEEGL----------- 156 (428)
T ss_pred --HHHHHHHHhhccccccccceEEEecc----cC----cchh-------------H---HHHHHHhcCe-----------
Confidence 899999999998888 8888864 21 1111 1 2333444453
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCcccc--CCCCCceEEEEeccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW--NRDPEASYLYYCDNE 283 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l--~i~~~t~~V~~thnE 283 (621)
++.|++..+ + .+.+.+.+ .++++|++|.+-|+.
T Consensus 157 -------------~Vt~lpv~~-----------------------------~---~~~d~~~~~~~i~~~T~lv~I~~Vn 191 (428)
T KOG1549|consen 157 -------------EVTYLPVED-----------------------------S---GLVDISKLREAIRSKTRLVSIMHVN 191 (428)
T ss_pred -------------EEEEeccCc-----------------------------c---ccccHHHHHHhcCCCceEEEEEecc
Confidence 233332110 0 12223333 478999999999999
Q ss_pred ccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCcee
Q psy8733 284 TVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVF 356 (621)
Q Consensus 284 T~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~l 356 (621)
+-.|+.+|+ +++.+++.+++||+|++|+.||||++++ ++++++|||+||+|+|++|+|++. .++ +..|.+.
T Consensus 192 n~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~ygp~~iGaLYvr~~~-~~~-~~~p~~~ 269 (428)
T KOG1549|consen 192 NEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIYGPPGIGALYVRRKR-PRL-RVEPPLS 269 (428)
T ss_pred cCccccccHHHHHHHhCcCCcEEEeehhhhcCCccccHHHcCchheeeecccccCCCcceEEEEccCC-Ccc-cccCccc
Confidence 999999996 4678899999999999999999999997 999999999999999999999822 111 1123332
Q ss_pred eccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc-cCCcccCc
Q psy8733 357 HFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN-SDKFYECP 420 (621)
Q Consensus 357 d~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~-~~g~~~~~ 420 (621)
.. .++.+.+.+|+++..+.+++.|+++..++ .+.++++.+++...+...+.. .++.++..
T Consensus 270 -GG-gq~r~~rsGT~~~~~~~~~gsA~e~~~~~--~~~~~~~~~~~~~~ll~~i~~~~~~~~~~G 330 (428)
T KOG1549|consen 270 -GG-GQERGLRSGTVATPLAVGLGSAAEFVNKE--MAYDEAIIKRLSEKLLMGIGQSLPEVTLNG 330 (428)
T ss_pred -CC-ccccccccCCcCchhhhhhHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhhhCchhhccC
Confidence 22 24456788999999999999999999886 344555555566666666543 44444443
No 36
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.94 E-value=5.2e-25 Score=235.25 Aligned_cols=280 Identities=18% Similarity=0.201 Sum_probs=201.1
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
+||+++|.+++|+.|++++++++.++.....+ ..+++++.+.+.++++|+.+++++++++..+|+|+ +|+|+
T Consensus 1 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~-~g~t~----- 72 (373)
T cd06453 1 VYLDNAATSQKPQPVIDAIVDYYRHYNANVHR--GVHELSARATDAYEAAREKVARFINAPSPDEIIFT-RNTTE----- 72 (373)
T ss_pred CcccCccccCCCHHHHHHHHHHHHhcCCCCCC--CccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEe-CCHHH-----
Confidence 48999999999999999999998776542111 14566788999999999999999999844478776 67898
Q ss_pred HHHHhhhccCCC--CCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHH--HHHHHHHHhCCceeeecccccccc
Q psy8733 132 AMNLISSSMNVP--NNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSK--KAAAEAEKYGKVNLVIPKVSKYVS 207 (621)
Q Consensus 132 alNlla~~~~~~--~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~--~~~~~a~~~G~~~~~~~~~~~~~~ 207 (621)
++|++..++..+ +||+|++.. .++.+. .+...++..|...+..+.
T Consensus 73 a~~~~~~~l~~~~~~g~~vl~~~-------------------------~~~~~~~~~~~~~~~~~g~~~~~v~~------ 121 (373)
T cd06453 73 AINLVAYGLGRANKPGDEIVTSV-------------------------MEHHSNIVPWQQLAERTGAKLKVVPV------ 121 (373)
T ss_pred HHHHHHHHhhhcCCCCCEEEECc-------------------------chhHHHHHHHHHHHhhcCcEEEEeec------
Confidence 566655444332 556655543 222221 234455566654332221
Q ss_pred cCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccc
Q psy8733 208 IPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 287 (621)
Q Consensus 208 ~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tG 287 (621)
++...+++|.+ ++ .+++++++|+++|.+|.+|
T Consensus 122 --------------------------~~~~~~d~~~l---------------------~~-~l~~~~~~v~~~~~~~~tG 153 (373)
T cd06453 122 --------------------------DDDGQLDLEAL---------------------EK-LLTERTKLVAVTHVSNVLG 153 (373)
T ss_pred --------------------------CCCCCcCHHHH---------------------HH-HhcCCceEEEEeCcccccC
Confidence 01111222221 11 2456899999999999999
Q ss_pred ccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCce-----
Q psy8733 288 VEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTV----- 355 (621)
Q Consensus 288 v~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~----- 355 (621)
...|+ +++++|+++++|+++++|..|+++.+++ ++++|+||++|++|+|++++++++++++.+.....
T Consensus 154 ~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~g~g~~~~~~~~~~~~~~~~~g~~~~~~ 233 (373)
T cd06453 154 TINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGEMIEE 233 (373)
T ss_pred CcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEeccccccCCCCcEEEEEchHHhhcCCCeecCCCcccc
Confidence 99996 4568999999999999999999998765 88999999998899999999999988776532110
Q ss_pred --eeccccccCC--CccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 356 --FHFKINADNN--SVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 356 --ld~~~~~~~~--s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
++........ ...+|||+..++++..+++++.++ |++++.++.+++++++++.|++++|+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~-g~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 300 (373)
T cd06453 234 VSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKI-GMEAIAAHEHELTAYALERLSEIPGVRVY 300 (373)
T ss_pred ccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence 0111111111 123699999999999999999988 89999999999999999999998766544
No 37
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=99.93 E-value=5e-27 Score=251.41 Aligned_cols=110 Identities=35% Similarity=0.680 Sum_probs=105.2
Q ss_pred hhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhc-CChHHH
Q psy8733 447 FFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQ-GGLAKM 525 (621)
Q Consensus 447 ~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~-gg~~~~ 525 (621)
.+||++|+|+||||||+|||+||+|++++++..+.+|.+++|+.+++++|+|||||||.||+++++|+||+++ ||++++
T Consensus 187 ~~~dvi~agsQKnlgP~Gltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~ 266 (364)
T PRK12462 187 EAYGMVYAHAQKNLGPAGVTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAM 266 (364)
T ss_pred HHccEEEeeccccCCCCceEEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHH
Confidence 3579999999999999999999999999999988899999999999999999999999999999999999998 899999
Q ss_pred HHHHHHHHHHHHHHHhccCCcccccCCCCCc
Q psy8733 526 EQNSLQKSVLLYQEIDNSDKFYECPVQAGFP 556 (621)
Q Consensus 526 ~~~~~~ka~~lY~~id~~~~~~~~~v~~~~~ 556 (621)
++|+++||++||++||++++||.++|+++++
T Consensus 267 ~~r~~~ka~~ly~~id~~~~~~~~~~~~~~R 297 (364)
T PRK12462 267 RDINARKAAMLYATLDALNEVIDCHAHRAAR 297 (364)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccCCCChhhc
Confidence 9999999999999999999999999987643
No 38
>PRK14012 cysteine desulfurase; Provisional
Probab=99.93 E-value=3.4e-24 Score=232.71 Aligned_cols=276 Identities=17% Similarity=0.116 Sum_probs=191.3
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCccccccccc-HHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRS-ADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs-~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
.++||+++|++++|++|++++.+++..+...+ +.+...|.. ....+.++++|+.+++++|++.+ +|+|+ +|||+
T Consensus 3 ~~iyld~a~~~~~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~-~v~~~-~g~t~-- 77 (404)
T PRK14012 3 LPIYLDYSATTPVDPRVAEKMMPYLTMDGTFG-NPASRSHRFGWQAEEAVDIARNQIADLIGADPR-EIVFT-SGATE-- 77 (404)
T ss_pred ceEEecCcCCCCCCHHHHHHHHHHHHhcccCc-CCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcC-eEEEe-CCHHH--
Confidence 36899999999999999999999886221111 111111211 12347899999999999999754 68887 67898
Q ss_pred hHHHHHHhhhccC---CCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccc
Q psy8733 129 AAVAMNLISSSMN---VPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 129 ~a~alNlla~~~~---~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
++|++..++. +++||+|++... .|.+ +. ..| ..+++.|...+..+.
T Consensus 78 ---al~~~l~~l~~~~~~~gd~Vi~~~~----~~~s---~~----------------~~~-~~~~~~g~~~~~v~~---- 126 (404)
T PRK14012 78 ---SDNLAIKGAAHFYQKKGKHIITSKT----EHKA---VL----------------DTC-RQLEREGFEVTYLDP---- 126 (404)
T ss_pred ---HHHHHHHHHHHhhcCCCCEEEEecC----ccHH---HH----------------HHH-HHHHhCCCEEEEEcc----
Confidence 6666554432 467787777653 2221 11 111 122345653322211
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~ 285 (621)
++.-.++++++ +-.+++++++|+++|..+.
T Consensus 127 ----------------------------~~~g~~d~~~l----------------------~~~i~~~t~lv~~~~~~n~ 156 (404)
T PRK14012 127 ----------------------------QSNGIIDLEKL----------------------EAAMRDDTILVSIMHVNNE 156 (404)
T ss_pred ----------------------------CCCCcCCHHHH----------------------HHhcCCCCEEEEEECcCCC
Confidence 00001112221 1135678999999999999
Q ss_pred ccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceeec
Q psy8733 286 DGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHF 358 (621)
Q Consensus 286 tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~ 358 (621)
+|+..|+ +++++|+++++|++|++|+.|+|+.+++ ++++|+||.+||.|+|+++++++...++. |.+...
T Consensus 157 tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g~G~l~~~~~~~~~~~---~~~~g~ 233 (404)
T PRK14012 157 IGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIYGPKGIGALYVRRKPRVRLE---AQMHGG 233 (404)
T ss_pred ccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhccCCCceEEEEEecCCCCCCC---ceecCC
Confidence 9999996 4568899999999999999999998764 99999999889999999999998654332 222111
Q ss_pred cccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 359 KINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 359 ~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
. .......+|+++..+.+++++++++.. +++.+.++.+++++++++.|.+++++..
T Consensus 234 ~--~~~~~~~gt~~~~~~~~l~~al~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~i~~ 289 (404)
T PRK14012 234 G--HERGMRSGTLPTHQIVGMGEAARIAKE--EMATENERIRALRDRLWNGIKDIEEVYL 289 (404)
T ss_pred C--ccCCccCCCcCHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 1 112244689999999999999999865 5888999999999999999998876653
No 39
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.93 E-value=5e-24 Score=226.74 Aligned_cols=282 Identities=14% Similarity=0.091 Sum_probs=192.6
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHhhccCCCccccccc-ccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSH-RSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 53 ~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~sh-rs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
||++++.+++|++|++++.+++.+....+.+ ..| .+..+.+.++++|+.+++++|++.+ +|+|+ +|+|+
T Consensus 1 yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~~-~g~t~----- 70 (353)
T TIGR03235 1 YLDHNATTPIDPAVAEAMLPWLLEEFGNPSS---RTHEFGHNAKKAVERARKQVAEALGADTE-EVIFT-SGATE----- 70 (353)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCc---hhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-CCHHH-----
Confidence 7899999999999999999988653322111 111 1334668899999999999999754 78887 66888
Q ss_pred HHHHhhhcc---CCCCC-ceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccc
Q psy8733 132 AMNLISSSM---NVPNN-YKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVS 207 (621)
Q Consensus 132 alNlla~~~---~~~~g-d~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~ 207 (621)
++|++...+ +.++| |+|++... .+ + .+...| ..+++.|...+..+
T Consensus 71 a~~~~l~~l~~~~~~~g~~~vi~~~~----~~---~----------------s~~~~~-~~~~~~G~~v~~v~------- 119 (353)
T TIGR03235 71 SNNLAILGLARAGEQKGKKHIITSAI----EH---P----------------AVLEPI-RALERNGFTVTYLP------- 119 (353)
T ss_pred HHHHHHHHHHHhcccCCCCeeeEccc----cc---H----------------HHHHHH-HHHHhcCCEEEEEc-------
Confidence 454433222 12334 44444321 11 1 111222 23345565332221
Q ss_pred cCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccc
Q psy8733 208 IPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 287 (621)
Q Consensus 208 ~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tG 287 (621)
.+|...++++++ ++ .+++++++|+++|.+|.+|
T Consensus 120 -------------------------~~~~~~~d~~~l---------------------~~-~l~~~~~lv~~~~~~n~tG 152 (353)
T TIGR03235 120 -------------------------VDESGRIDVDEL---------------------AD-AIRPDTLLVSIMHVNNETG 152 (353)
T ss_pred -------------------------cCCCCcCCHHHH---------------------HH-hCCCCCEEEEEEcccCCce
Confidence 111111222221 11 2456789999999999999
Q ss_pred ccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccc
Q psy8733 288 VEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKI 360 (621)
Q Consensus 288 v~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~ 360 (621)
+..|+ +++++|+++++|++|++|..++|+++++ ++++|+||++||+|+|+++++++.+... ...|.+++..
T Consensus 153 ~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g~g~l~~~~~~~~~~-~~~~~~~~~~- 230 (353)
T TIGR03235 153 SIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKIYGPKGIGALVIRKRGKPKA-PLKPIMFGGG- 230 (353)
T ss_pred eccCHHHHHHHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehhhcCCCCceEEEEEccCccccc-ccCceeeCCC-
Confidence 99996 3568899999999999999999999875 9999999999999999999999976432 1234333221
Q ss_pred cccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCC
Q psy8733 361 NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRM 429 (621)
Q Consensus 361 ~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~ 429 (621)
...+...+|||+..++++.++++++. . |++++.++++++++++++.|.+ .|+.+.. ++..|++.
T Consensus 231 -~~~~~~~gt~~~~~~~al~~al~~~~-~-~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~-~~~~~~~~ 294 (353)
T TIGR03235 231 -QERGLRPGTLPVHLIVGMGEAAEIAR-R-NAQAWEVKLRAMRNQLRDALQT-LGVKLNG-DPAETIPH 294 (353)
T ss_pred -CcCccccCCCChHHHHHHHHHHHHHH-h-hHHHHHHHHHHHHHHHHHHhcc-CCeEEeC-CcccccCC
Confidence 12345568999999999999999986 4 7999999999999999999988 5676543 23345543
No 40
>KOG2790|consensus
Probab=99.92 E-value=1.4e-25 Score=226.21 Aligned_cols=173 Identities=53% Similarity=0.876 Sum_probs=141.2
Q ss_pred cCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccc
Q psy8733 208 IPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 287 (621)
Q Consensus 208 ~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tG 287 (621)
+|+...|...++..|+|||++|+|+|-..+.+ | ++.....+.+|..+.
T Consensus 137 vPd~~~w~~~~da~yvyyCaNETVHGVEf~~~-----------------------P------~~~~~~~vlVaDmSS--- 184 (370)
T KOG2790|consen 137 VPDPSTWELNPDASYVYYCANETVHGVEFDFI-----------------------P------VNDPKGAVLVADMSS--- 184 (370)
T ss_pred CCChhhcccCCCccEEEEecCceeeceecCCC-----------------------C------CCCCCCceEEEeccc---
Confidence 68889999999999999999999996444322 1 000011222222221
Q ss_pred cccccccccCCCcEEEecccccCCCcccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccccCCCc
Q psy8733 288 VEFNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSV 367 (621)
Q Consensus 288 v~~p~i~~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~ 367 (621)
+.+.+. +|. |-+|. +++|+|||+||+|++++++|++++.+..+.+|+.+||+.+.+++|.
T Consensus 185 ---nflSrp------vDv-sk~gv----------i~aGAQKN~G~aG~Tvvivr~dllg~~~~~tP~v~dyk~~~~NnSl 244 (370)
T KOG2790|consen 185 ---NFLSRP------VDV-SKFGV----------IFAGAQKNVGPAGVTVVIVRKDLLGNALDITPSVLDYKIMDKNNSL 244 (370)
T ss_pred ---chhcCC------ccc-hhcce----------EEeccccccCccccEEEEEehhhhcccccCCccccceeeecccccc
Confidence 112221 121 22333 5799999999999999999999999988889999999999999999
Q ss_pred cCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCccc
Q psy8733 368 YNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVT 432 (621)
Q Consensus 368 ~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~ 432 (621)
|||||+++||.++++++||++.||++++++.+.++++.||+.|+++.|||.+|++|..||+|||+
T Consensus 245 yNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~gfy~cpVe~~~RS~MNV~ 309 (370)
T KOG2790|consen 245 YNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEPSVRSRMNVP 309 (370)
T ss_pred ccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCeEEcccchhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998
No 41
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=99.86 E-value=2.6e-21 Score=202.60 Aligned_cols=108 Identities=56% Similarity=0.870 Sum_probs=104.4
Q ss_pred eccccccCCCccEEEEEchhHHhhhCCC-CCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q psy8733 324 AGAQKNIGPAGITVVIVREDLLEYALPI-TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQK 402 (621)
Q Consensus 324 asaqK~lGP~Glg~livr~~ll~~~~~~-~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~l 402 (621)
+|+|||+||.|++++|+|+++++++++. +|++|+|....+++++|||||++.+|.++++++|++++||++++++|++++
T Consensus 196 agaQKnlGpaGltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~k 275 (365)
T COG1932 196 AGAQKNLGPAGLTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAK 275 (365)
T ss_pred EehhhccCccceEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6889999999999999999999999887 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCcccCccCCCCCCCCccc
Q psy8733 403 SVLLYQEIDNSDKFYECPVQAGCRSRMNVT 432 (621)
Q Consensus 403 a~~L~e~L~~~~g~~~~~~~~~~RS~~nv~ 432 (621)
++.||+.+++++ ||.+++.++.||.||||
T Consensus 276 a~~LY~~id~s~-fy~~~v~~~~RS~mnV~ 304 (365)
T COG1932 276 AQLLYDWIDKSD-FYRNLVAKANRSRMNVT 304 (365)
T ss_pred HHHHHHHHHhCC-ccccccchhhccceeEE
Confidence 999999999994 99999999999999998
No 42
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.85 E-value=2.2e-19 Score=194.40 Aligned_cols=264 Identities=16% Similarity=0.101 Sum_probs=174.4
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCcccccccc-cHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhh
Q psy8733 59 PAKLPREVLEEVKETLLDYESTGISVMEMSHR-SADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLIS 137 (621)
Q Consensus 59 Ps~~P~~Vlea~~~~l~~~~~~g~sv~e~shr-s~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla 137 (621)
-+|+|++|++++.++...+.+. .+ ..|+ .......++++|+.+++++|+++ ++|+ +|+|+++.
T Consensus 29 ~~p~~~~~~~a~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~l~~~lA~~~g~~~---~~~~-~g~t~a~~-------- 92 (387)
T PRK09331 29 GGILTPEARKALIEYGDGYSVC-DY---CPGRLDQIKKPPIADFHEDLAEFLGMDE---ARVT-HGAREGKF-------- 92 (387)
T ss_pred CCCCCHHHHHHHHHHHhccCCC-cc---cccccccccChHHHHHHHHHHHHhCCCc---EEEe-CCHHHHHH--------
Confidence 4688999999999998544221 11 1333 22234579999999999999963 6776 56888322
Q ss_pred hccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCC
Q psy8733 138 SSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRD 217 (621)
Q Consensus 138 ~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 217 (621)
+++.+++.+|+++.+..+++++... .++..|...+..+..
T Consensus 93 -----------------------~al~~l~~~gd~Vlv~~~~h~s~~~--~~~~~G~~~~~v~~~--------------- 132 (387)
T PRK09331 93 -----------------------AVMHSLCKKGDYVVLDGLAHYTSYV--AAERAGLNVREVPKT--------------- 132 (387)
T ss_pred -----------------------HHHHHhcCCCCEEEECCCchHHHHH--HHHHcCCEEEEEeCc---------------
Confidence 3445556667776666666776533 356667643332210
Q ss_pred CCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccC-----CCCCceEEEEecccccccccccc
Q psy8733 218 PEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWN-----RDPEASYLYYCDNETVDGVEFNY 292 (621)
Q Consensus 218 ~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~-----i~~~t~~V~~thnET~tGv~~p~ 292 (621)
.+|...++++.++ +.+. ..+++++|+++|.++.+|...|+
T Consensus 133 ---------------~~~~~~~d~~~l~--------------------~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l 177 (387)
T PRK09331 133 ---------------GYPEYKITPEAYA--------------------EKIEEVKEETGKPPALALLTHVDGNYGNLADA 177 (387)
T ss_pred ---------------cCcCCCcCHHHHH--------------------HHHHHhhhccCCCCEEEEEECCCCCCcccccH
Confidence 0111112333320 0111 12478999999999999999996
Q ss_pred -----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEchhHHhhhCCCCCceeeccccccC
Q psy8733 293 -----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINADN 364 (621)
Q Consensus 293 -----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~ 364 (621)
+++++|+++++|+++++|..|++..+++ ++++|+||++| |+|+|++++++++++++....+.|. ... .
T Consensus 178 ~~I~~la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~~~~~-~~~-~-- 253 (387)
T PRK09331 178 KKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAPSGVLATTEEYADKVFRTSRKFG-VKE-V-- 253 (387)
T ss_pred HHHHHHHHHcCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhcccccCCCc-ccc-e--
Confidence 4568899999999999999999999885 99999999995 8999999999999887654333221 110 0
Q ss_pred CCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCc
Q psy8733 365 NSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECP 420 (621)
Q Consensus 365 ~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~ 420 (621)
.....|++...++++.++++++.+. + ...+++.++++++++.|.+++|+.+..
T Consensus 254 ~~~~~~~~~~~~~~~~aal~~~~~~--~-~~~~~~~~~~~~l~~~L~~l~g~~~~~ 306 (387)
T PRK09331 254 ELLGCTLRGAPLVTLMASFPHVVER--V-KRWDEEVKKARWFVDELEKIEGFKQLG 306 (387)
T ss_pred eeeceecCchHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHhcCCCEEEec
Confidence 0011233334455566677776654 3 345666778889999999997776654
No 43
>PLN02452 phosphoserine transaminase
Probab=99.81 E-value=1.8e-20 Score=201.94 Aligned_cols=106 Identities=51% Similarity=0.893 Sum_probs=101.0
Q ss_pred hhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHH
Q psy8733 447 FFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKME 526 (621)
Q Consensus 447 ~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~ 526 (621)
.++|++|+|+|||+||+|++++|+|++++++..+..|.+++|+.+.+|+|+|||||++.||.++++|+||+++||+++++
T Consensus 189 ~~~~v~~~saqK~lGP~Gl~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~ 268 (365)
T PLN02452 189 SKYGVIYAGAQKNVGPSGVTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAME 268 (365)
T ss_pred HHcCEEEEecccccCCCCeEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHH
Confidence 35788999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCcccccCC
Q psy8733 527 QNSLQKSVLLYQEIDNSDKFYECPVQ 552 (621)
Q Consensus 527 ~~~~~ka~~lY~~id~~~~~~~~~v~ 552 (621)
+|+++|++.||+.|+++++||.++++
T Consensus 269 ~r~~~~a~~l~~~l~~~~G~y~~~~~ 294 (365)
T PLN02452 269 KRNIRKADLLYDAIDESNGFYVCPVE 294 (365)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCCCC
Confidence 99999999999999999999888764
No 44
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.80 E-value=1.9e-18 Score=191.06 Aligned_cols=276 Identities=12% Similarity=0.058 Sum_probs=175.5
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhc--cCCCcccccccccHHHHHHHHH-HHHHHHHHhCCCCCCEEEEEc--CCc
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYE--STGISVMEMSHRSADYTKINND-TQAALRELLNVPNNYKILFLQ--GGG 124 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~--~~g~sv~e~shrs~~f~~i~~~-ar~~La~Ll~~p~~yeI~f~~--ggg 124 (621)
+...++.|+-..+++.|++++...+.+.. +.+.| .++.+.++.+.+++ +|+.++++||++.+ ++.|.. .||
T Consensus 34 ~~~l~l~~sen~~s~~v~~~~~~~l~~~y~~g~p~s---~~~~g~~~~~~iE~~ar~~~a~lf~a~~~-~~~~~~~~~sg 109 (452)
T PTZ00094 34 IEGLELIASENFTSRAVLECLGSCFTNKYAEGLPGN---RYYGGNEVVDKIENLCQKRALEAFGLDPE-EWGVNVQPYSG 109 (452)
T ss_pred HcCeeEecccccCCHHHHHHhcchhhccccCCCCCc---cccccchHHHHHHHHHHHHHHHHhCCCcc-cceeecCCCch
Confidence 45789999999999999999999997755 33333 23335567788885 99999999999754 555542 567
Q ss_pred chhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHH-hCCceeeecccc
Q psy8733 125 TGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEK-YGKVNLVIPKVS 203 (621)
Q Consensus 125 T~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~-~G~~~~~~~~~~ 203 (621)
|. +.+++..++ +++||+|++.. ++. ..++ .. | ...+++ .+....
T Consensus 110 t~-----an~~v~~al-~~~gd~Ii~~~------~eh-g~~l----------~~--~----~~l~~~~~~~~~~------ 154 (452)
T PTZ00094 110 SP-----ANFAVYTAL-LQPHDRIMGLD------LPS-GGHL----------TH--G----FYTAKKKVSATSI------ 154 (452)
T ss_pred HH-----HHHHHHHHh-cCCCCEEEecc------ccc-CCcc----------cc--c----cccccccccccee------
Confidence 77 444445555 67888888763 221 1111 00 1 100000 000000
Q ss_pred cccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccc
Q psy8733 204 KYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNE 283 (621)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnE 283 (621)
.+++.+.. ++. . ..++.+++ +......++++|.+++
T Consensus 155 -------------~~~~~~~~------~~~-~-g~id~~~L---------------------~~~l~~~~~~lvi~~~-- 190 (452)
T PTZ00094 155 -------------YFESLPYQ------VNE-K-GLIDYDKL---------------------EELAKAFRPKLIIAGA-- 190 (452)
T ss_pred -------------eeeeeecc------cCC-C-CCcCHHHH---------------------HHHHHHhCCCEEEEeC--
Confidence 00000000 000 0 01222221 1110112456666554
Q ss_pred ccccccccc-----ccccCCCcEEEecccccCCCcccc-----cccceEEecccccc-CCCccEEEEEchhHHhhhCCCC
Q psy8733 284 TVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDV-----SKFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPIT 352 (621)
Q Consensus 284 T~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv-----~~~gvl~asaqK~l-GP~Glg~livr~~ll~~~~~~~ 352 (621)
+.+|..+|+ +++++|++++||++|++|..++|+ +..|++++|+|||| ||.| |++++++++.+.+.+..
T Consensus 191 s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP~G-g~l~~~~~~~~~l~~~~ 269 (452)
T PTZ00094 191 SAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRS-GLIFYRKKVKPDIENKI 269 (452)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCCCc-eEEEEecccchHHHHhh
Confidence 357999996 456889999999999999997765 33579999999999 7999 88888887654332211
Q ss_pred CceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 353 PTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 353 P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
... ......++|+...++++.++++++.+. +.+.+.++..+++++|.+.|.+. |+.+
T Consensus 270 ~~~-------~~p~~~G~~~~~~iaal~~al~~~~~~-~~~~~~~~i~~l~~~l~~~L~~~-g~~v 326 (452)
T PTZ00094 270 NEA-------VFPGLQGGPHNHQIAAIAVQLKEVQSP-EWKEYAKQVLKNAKALAAALEKR-GYDL 326 (452)
T ss_pred ccc-------cCCCCCCCchHHHHHHHHHHHHHHhCh-hHHHHHHHHHHHHHHHHHHHHhC-CcEE
Confidence 000 001234789999999999999999887 78999999999999999999875 4543
No 45
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.80 E-value=1.7e-17 Score=177.50 Aligned_cols=266 Identities=14% Similarity=0.109 Sum_probs=169.6
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCcccccccc-cHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhh
Q psy8733 59 PAKLPREVLEEVKETLLDYESTGISVMEMSHR-SADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLIS 137 (621)
Q Consensus 59 Ps~~P~~Vlea~~~~l~~~~~~g~sv~e~shr-s~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla 137 (621)
|.++.+++++++.++...+.+.. + .+|+ +......+.+.++.+++++|+ + +++++ +|+|++ +++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~l~~~la~~~g~-~--~i~~~-~g~t~a-----l~~-- 74 (361)
T cd06452 10 GGRLTPEARKALIEWGDGYSVCD-F---CRGRLDEIEKPPIKDFHHDLAEFLGM-D--EARVT-PGAREG-----KFA-- 74 (361)
T ss_pred CCCCCHHHHHHHHHHhcccCCcc-c---cccccccccCchHHHHHHHHHHHcCC-c--eEEEe-CCHHHH-----HHH--
Confidence 45678889999888864332211 1 1232 222345788999999999999 3 68876 568883 322
Q ss_pred hccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCC
Q psy8733 138 SSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRD 217 (621)
Q Consensus 138 ~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 217 (621)
++.+++.+|+++.+...++++.. ..++.+|...+..+.. +
T Consensus 75 ------------------------~l~~~~~~gd~Vl~~~~~~~~~~--~~~~~~g~~~~~v~~~-----------~--- 114 (361)
T cd06452 75 ------------------------VMHSLCEKGDWVVVDGLAHYTSY--VAAERAGLNVREVPNT-----------G--- 114 (361)
T ss_pred ------------------------HHHHhcCCCCEEEEcCCcchHHH--HHHHhcCCEEEEEecC-----------C---
Confidence 34445566666666556666653 2466677643332210 0
Q ss_pred CCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCcccc--CCCCCceEEEEecccccccccccc---
Q psy8733 218 PEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW--NRDPEASYLYYCDNETVDGVEFNY--- 292 (621)
Q Consensus 218 ~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l--~i~~~t~~V~~thnET~tGv~~p~--- 292 (621)
++.| .+++|.++. .+ +.. ...+++++|+++|.++.+|...|+
T Consensus 115 --------------~~~~--~~d~~~l~~--------------~l---~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i 161 (361)
T cd06452 115 --------------HPEY--HITPEGYAE--------------VI---EEVKDEFGKPPALALLTHVDGNYGNLHDAKKI 161 (361)
T ss_pred --------------CCCc--ccCHHHHHH--------------HH---HHHhhccCCCceEEEEECCCCCCeeeccHHHH
Confidence 0001 122222100 00 000 001478999999999999999885
Q ss_pred --ccccCCCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEchhHHhhhCCCCCceeeccccccCCCc
Q psy8733 293 --IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINADNNSV 367 (621)
Q Consensus 293 --i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~ 367 (621)
+++++|+++++|+++++|..|++..+++ +++.|.||+++ |.|+|++++++++++++...... ++... ....
T Consensus 162 ~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~-~~~~~---~~~~ 237 (361)
T cd06452 162 AKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQM-FKIKE---VELL 237 (361)
T ss_pred HHHHHHcCCeEEEECCcccCCcCCCHHHcCCCEEEecCCccccCCCCeEEEEECHHHHHHHhccccc-cccce---eeee
Confidence 3567899999999999999999988876 99999999996 77899999999999887543321 22211 1112
Q ss_pred cCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 368 YNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 368 ~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
..|++...++++.++++++.+. ++. .++..++++++++.|.+++|+.+.
T Consensus 238 ~~~~~~~~~~~~~~al~~~~~~--~~~-~~~~~~~~~~l~~~L~~l~g~~v~ 286 (361)
T cd06452 238 GCTLRGAPLVTLMASFPHVKER--VKR-WDEEVEKARWFVAELEKIEGIKQL 286 (361)
T ss_pred ccccCchHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHhcCCCeEEE
Confidence 2455556677777777776553 433 444456678999999998777654
No 46
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.80 E-value=2.4e-17 Score=175.77 Aligned_cols=265 Identities=17% Similarity=0.094 Sum_probs=171.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHH
Q psy8733 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMN 134 (621)
Q Consensus 55 f~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alN 134 (621)
|+...++..+.+++++.+++....+. + ..+ +...++.+++++.+++++|+++. .++|+ +|||+++.+ ++.
T Consensus 25 ~~~~~~~~~~~~~~a~~~~~~~~~~~--~---~~~--~~~~~~~~~~~~~la~~~g~~~~-~~~~~-~ggt~a~~~-a~~ 94 (371)
T PRK13520 25 LSSMCTEPHPIARKAHEMFLETNLGD--P---GLF--PGTAKLEEEAVEMLGELLHLPDA-YGYIT-SGGTEANIQ-AVR 94 (371)
T ss_pred eeeeecCchHHHHHHHHHHHhcCCCC--c---ccC--ccHHHHHHHHHHHHHHHhCCCCC-CeEEe-cCcHHHHHH-HHH
Confidence 66677888888899999887542221 1 111 23567788999999999999865 46665 678884332 111
Q ss_pred HhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCC
Q psy8733 135 LISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW 214 (621)
Q Consensus 135 lla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~ 214 (621)
.+ ....++++ +++.+...++++ |.+.++++|......+.
T Consensus 95 ~~-~~~~~~~~-------------------------~~vl~~~~~h~s--~~~~~~~~g~~~~~v~~------------- 133 (371)
T PRK13520 95 AA-RNLAKAEK-------------------------PNIVVPESAHFS--FDKAADMLGVELRRAPL------------- 133 (371)
T ss_pred HH-HhhccCCC-------------------------ceEEecCcchHH--HHHHHHHcCceEEEecC-------------
Confidence 10 01112233 344444445554 45566777754332221
Q ss_pred CCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc--
Q psy8733 215 NRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY-- 292 (621)
Q Consensus 215 ~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~-- 292 (621)
+|...+++|++ + -.+++++++|.+++++|.+|...|+
T Consensus 134 -------------------~~~~~~d~~~l---------------------~-~~i~~~~~~vi~~~~~~~tG~~~~l~~ 172 (371)
T PRK13520 134 -------------------DDDYRVDVKAV---------------------E-DLIDDNTIGIVGIAGTTELGQVDPIPE 172 (371)
T ss_pred -------------------CCCCcCCHHHH---------------------H-HHHhhCCEEEEEEcCCcCCcccCCHHH
Confidence 11111222221 0 1245668888899999999999996
Q ss_pred ---ccccCCCcEEEecccccCCCc-------cccccc--ceEEeccccccC-CCccEEEEEchh-HHhhhCCCCCceeec
Q psy8733 293 ---IPDSQGIPLVSDMSSNFLSRK-------FDVSKF--GVIIAGAQKNIG-PAGITVVIVRED-LLEYALPITPTVFHF 358 (621)
Q Consensus 293 ---i~~~~g~llvvDavSs~G~~p-------IDv~~~--gvl~asaqK~lG-P~Glg~livr~~-ll~~~~~~~P~~ld~ 358 (621)
+++++|++++||++++.+..| +|+..+ +++.+++|||++ |.|.|.++++++ +++.+....| |+..
T Consensus 173 I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~~~-~~~~ 251 (371)
T PRK13520 173 LSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVDTP-YLTS 251 (371)
T ss_pred HHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEEEEcCHHHHHhhcccCc-cccC
Confidence 456889999999999866533 444433 488899999985 778888887654 6665432222 2211
Q ss_pred cccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 359 KINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 359 ~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
.. .....+|++...++++..+++.+.+. |++++.++..++++++++.|+++ |+.
T Consensus 252 ~~---~~~~~gt~~~~~~~~~~~al~~l~~~-g~~~~~~~~~~~~~~l~~~L~~~-g~~ 305 (371)
T PRK13520 252 KK---QATLTGTRSGAGVAATYAVMKYLGRE-GYRKVVERCMENTRWLAEELKER-GFE 305 (371)
T ss_pred CC---CcceEeeccChHHHHHHHHHhhhcHh-HHHHHHHHHHHHHHHHHHHHHhC-CCE
Confidence 11 11234688888899999999999877 89999999999999999999987 454
No 47
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.77 E-value=9.7e-17 Score=171.43 Aligned_cols=264 Identities=18% Similarity=0.127 Sum_probs=164.1
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
.++++.++.+.|+ +++++..++.... |. .++.+...++.+++|+.+++++|+++. +++++ .|+|+++..
T Consensus 23 ~~~~~~~~~~~~~-~~~a~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~la~~~g~~~~-~~~~~-~g~~~~~~~- 91 (373)
T TIGR03812 23 RILGSMCTNPHPI-AVKAYDMFIETNL--GD-----PGLFPGTKKIEEEVVGSLGNLLHLPDA-YGYIV-SGGTEANIQ- 91 (373)
T ss_pred cEEEEEeCCchHH-HHHHHHHHhhcCC--CC-----cccCccHHHHHHHHHHHHHHHhCCCCC-CeEEe-ccHHHHHHH-
Confidence 4688888876655 5777777654321 11 111233567889999999999999765 45555 457773221
Q ss_pred HHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhh---CCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccccc
Q psy8733 132 AMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLI---GRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSI 208 (621)
Q Consensus 132 alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~---~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~ 208 (621)
++.. ..++. .+|+++.+..+++++ |.+.++.+|...+..+.
T Consensus 92 ~~~~---------------------------~~~~~~~~~~g~~vl~~~~~h~~--~~~~~~~~G~~~~~v~~------- 135 (373)
T TIGR03812 92 AVRA---------------------------AKNLAREEKRTPNIIVPESAHFS--FEKAAEMLGLELRYAPL------- 135 (373)
T ss_pred HHHH---------------------------HHHHHhccCCCcEEEECCcchHH--HHHHHHHcCCeEEEEee-------
Confidence 1110 11211 133444444445554 45566777764333221
Q ss_pred CCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccc
Q psy8733 209 PDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGV 288 (621)
Q Consensus 209 ~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv 288 (621)
++....+.+.+ +. .+++++..+.+++++|.+|.
T Consensus 136 -------------------------~~~~~~d~~~l---------------------~~-~l~~~~~~vv~~~~~~~tG~ 168 (373)
T TIGR03812 136 -------------------------DEDYTVDVKDV---------------------ED-LIDDNTIGIVGIAGTTELGQ 168 (373)
T ss_pred -------------------------CCCCCcCHHHH---------------------HH-HHhhCcEEEEEECCCCCCCc
Confidence 01111111221 11 23445544444456789999
Q ss_pred cccc-----ccccCCCcEEEecccccCCC----------ccccccc--ceEEecccccc-CCCccEEEE-EchhHHhhhC
Q psy8733 289 EFNY-----IPDSQGIPLVSDMSSNFLSR----------KFDVSKF--GVIIAGAQKNI-GPAGITVVI-VREDLLEYAL 349 (621)
Q Consensus 289 ~~p~-----i~~~~g~llvvDavSs~G~~----------pIDv~~~--gvl~asaqK~l-GP~Glg~li-vr~~ll~~~~ 349 (621)
..|+ +++++|++++||++++.+.. ++|+... +.+.+++|||+ +|.|.|.++ .++++++.+.
T Consensus 169 ~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~ 248 (373)
T TIGR03812 169 IDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLS 248 (373)
T ss_pred cCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhhc
Confidence 9986 45678999999999975543 4555433 48889999986 477777555 5677776653
Q ss_pred CCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 350 PITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 350 ~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
...| |+... ......+|+|...+.++..+++++.++ |++++.++..+++++|++.|.+++
T Consensus 249 ~~~~-~~~~~---~~~~~~gt~~~~~~~~~~~~l~~l~~~-g~~~~~~~~~~~~~~l~~~L~~~g 308 (373)
T TIGR03812 249 VDAP-YLTVK---KQATITGTRSGASAAATYAVIKYLGRE-GYRKIVAECMENTRYLVEELKKIG 308 (373)
T ss_pred ccCc-ccCCC---CCcceEeechhHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2222 22111 112334799999999999999999887 899999999999999999999875
No 48
>PRK02769 histidine decarboxylase; Provisional
Probab=99.74 E-value=6e-17 Score=175.60 Aligned_cols=273 Identities=14% Similarity=0.115 Sum_probs=181.9
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCE-EEEEcCCcchhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYK-ILFLQGGGTGMF 128 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~ye-I~f~~gggT~~~ 128 (621)
++.++-.|.....+.+.++++..++.+..+...+ .+..+....++.+++++.++++||++++.. .+| ++|||+
T Consensus 22 ~~~~~g~p~~~~~~~~~~~~~~~~~~~n~gnp~~---~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~-TsGgTe-- 95 (380)
T PRK02769 22 QYFNVGYPEAADFDYSALKRFFSFSINNCGDPYS---KSNYPLNSFDFERDVMNFFAELFKIPFNESWGYI-TNGGTE-- 95 (380)
T ss_pred hhcccCCCchhhcCHHHHHHHHHhhhccCCCccc---cCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEE-ecChHH--
Confidence 4556666777878777788887776553333222 222233456788899999999999986422 255 588999
Q ss_pred hHHHHHHhhhcc--CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccc
Q psy8733 129 AAVAMNLISSSM--NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYV 206 (621)
Q Consensus 129 ~a~alNlla~~~--~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~ 206 (621)
+ |+.|-+. ++.++++|++++. .+++- .+.++..|......+..
T Consensus 96 ---a-n~~a~~~ar~~~~~~~ii~s~~-------------------------~H~Sv--~ka~~~lg~~~~~V~~~---- 140 (380)
T PRK02769 96 ---G-NLYGCYLARELFPDGTLYYSKD-------------------------THYSV--SKIARLLRIKSRVITSL---- 140 (380)
T ss_pred ---H-HHHHHHHHHHhCCCcEEEeCCC-------------------------ceehH--HHHHHHcCCCCceeccC----
Confidence 4 5554221 2334444544431 22221 23344455321111100
Q ss_pred ccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccC-CCCCceEEEEeccccc
Q psy8733 207 SIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWN-RDPEASYLYYCDNETV 285 (621)
Q Consensus 207 ~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~-i~~~t~~V~~thnET~ 285 (621)
+.+ .++.++++ +.+. -...+.+|++++..|.
T Consensus 141 ---------------------------~~g-~id~~~L~--------------------~~i~~~~~~t~lvv~t~gtt~ 172 (380)
T PRK02769 141 ---------------------------PNG-EIDYDDLI--------------------SKIKENKNQPPIIFANIGTTM 172 (380)
T ss_pred ---------------------------CCC-cCcHHHHH--------------------HHHHhCCCCcEEEEEEeCCCC
Confidence 000 12222210 0010 1234899999999999
Q ss_pred ccccccc-----ccccCC---CcEEEecccccCCCc-------ccccc-cceEEeccccccC-CCccEEEEEchhHHhhh
Q psy8733 286 DGVEFNY-----IPDSQG---IPLVSDMSSNFLSRK-------FDVSK-FGVIIAGAQKNIG-PAGITVVIVREDLLEYA 348 (621)
Q Consensus 286 tGv~~p~-----i~~~~g---~llvvDavSs~G~~p-------IDv~~-~gvl~asaqK~lG-P~Glg~livr~~ll~~~ 348 (621)
+|...|+ +++++| ++++|||+|+.+..| +|+.+ .|.+.+++|||+| |.|+|++++|++.++++
T Consensus 173 tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~ 252 (380)
T PRK02769 173 TGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKKYVERI 252 (380)
T ss_pred CcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEehhhhhhc
Confidence 9999997 345676 699999999999996 77754 5599999999997 99999999999988766
Q ss_pred CCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 349 LPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 349 ~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
.+. ..|++. ......+|+|.+.++++..+|+++..+ |++++.++..++++++++.|++.+ +..
T Consensus 253 ~~~-~~yl~~----~d~t~~GSR~g~~~l~lw~aL~~lg~~-G~~~~~~~~~~la~~l~~~L~~~g-~~~ 315 (380)
T PRK02769 253 SVD-VDYIGS----RDQTISGSRNGHTALLLWAAIRSLGSK-GLRQRVQHCLDMAQYAVDRLQANG-IPA 315 (380)
T ss_pred ccC-ccccCC----CCCCccCCCCcHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHhCC-CEE
Confidence 432 234321 123456899999999999999999888 899999999999999999998863 543
No 49
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.73 E-value=1.1e-15 Score=168.10 Aligned_cols=277 Identities=18% Similarity=0.076 Sum_probs=169.5
Q ss_pred CceeccCC--------CCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCC-CEEEEE-
Q psy8733 51 PVINFGAG--------PAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN-YKILFL- 120 (621)
Q Consensus 51 ~~~lf~aG--------Ps~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~-yeI~f~- 120 (621)
.+|+++++ ++++.+++.+.|...+.....+. +-++...++.+++++.++++||+++. .++.|+
T Consensus 34 ~iyld~~a~~~~~~~~tt~~~p~~~~~~~~~l~~~~~np-------~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~ 106 (431)
T TIGR01788 34 ELSLDGNPRLNLATFVTTWMEPEARKLMDETINKNMIDK-------DEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTS 106 (431)
T ss_pred HhhhcCCcceeeeeeeCCCCCHHHHHHHHHHHhcCCCCc-------ccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEE
Confidence 46788888 89989999999998875322211 11233458999999999999999832 257774
Q ss_pred cCCcchhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHh-----hCCC--CcEEEEEcChHHHH-HHHHHHHh
Q psy8733 121 QGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNL-----IGRT--GKADYVVTGSWSKK-AAAEAEKY 192 (621)
Q Consensus 121 ~gggT~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL-----~~~g--~~~~~v~tG~~~~~-~~~~a~~~ 192 (621)
++|||+ |.|+ | +-++ .+. ...| ..-..+.++.-.|. |.+.++..
T Consensus 107 TsGgTE-----An~~-a---------------------l~~a-r~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~l 158 (431)
T TIGR01788 107 TIGSSE-----AIML-G---------------------GLAM-KWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYF 158 (431)
T ss_pred echHHH-----HHHH-H---------------------HHHH-HHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHc
Confidence 689999 4554 1 1111 100 0001 00123333444443 34455555
Q ss_pred CCceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCC
Q psy8733 193 GKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP 272 (621)
Q Consensus 193 G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~ 272 (621)
|.....++.. + -+-.++++++ +-.+++
T Consensus 159 g~~v~~i~~d------------------------~-------~~~~vd~~~L----------------------~~~i~~ 185 (431)
T TIGR01788 159 DVELREVPMD------------------------P-------GRYVIDPEQV----------------------VEAVDE 185 (431)
T ss_pred CceeEEEecC------------------------C-------CceeeCHHHH----------------------HHHHhh
Confidence 6432222110 0 0001122221 013567
Q ss_pred CceEEEEecccccccccccc-----ccccC------CCcEEEecccc-------cCCCccccccc--ceEEecccccc-C
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQ------GIPLVSDMSSN-------FLSRKFDVSKF--GVIIAGAQKNI-G 331 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~------g~llvvDavSs-------~G~~pIDv~~~--gvl~asaqK~l-G 331 (621)
++.+|++++..|.+|++.|+ +++++ +++++||++|+ ++..++|++.. |.+.+++|||+ |
T Consensus 186 ~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~ 265 (431)
T TIGR01788 186 NTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLV 265 (431)
T ss_pred CCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCC
Confidence 89999999999999999997 34566 89999999999 45555555322 36999999998 8
Q ss_pred CCccEEEEEchhH-H-hhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAGITVVIVREDL-L-EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~Glg~livr~~l-l-~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
|.|+|++++|++- + +.+. ..+.|+.... .+ ....++-+-..+.++-..|..+-.. |++++.+++.++++++++.
T Consensus 266 P~g~G~l~~r~~~~l~~~~~-~~~~yl~~~~-~~-~t~~~sR~g~~al~~w~~l~~lG~~-G~~~i~~~~~~la~~l~~~ 341 (431)
T TIGR01788 266 YPGVGWVIWRDEEALPEELI-FHVNYLGGDE-PT-FTLNFSRPANQVIAQYYNFLRLGRE-GYRKIMQNSLDVARYLAEE 341 (431)
T ss_pred CCCcEEEEEeChHHcchhhe-ecccccCCCC-CC-cceecCchHHHHHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999862 1 2111 1223432211 00 1111222222333344456666566 8999999999999999999
Q ss_pred HHccCCcccC
Q psy8733 410 IDNSDKFYEC 419 (621)
Q Consensus 410 L~~~~g~~~~ 419 (621)
|.+.++|.+.
T Consensus 342 L~~~~~~el~ 351 (431)
T TIGR01788 342 IAKLGPFEII 351 (431)
T ss_pred HHhCCCEEEe
Confidence 9999877665
No 50
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.73 E-value=1.2e-15 Score=164.32 Aligned_cols=139 Identities=12% Similarity=0.158 Sum_probs=97.2
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEchh
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVRED 343 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~~ 343 (621)
+++++|+++|.++++|...|+ +++++|+++++|.++++|..+++..+++ +++.|.||++| +.++|+++.+++
T Consensus 145 ~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~~ 224 (370)
T TIGR02539 145 KPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGVLGMSEE 224 (370)
T ss_pred CCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHH
Confidence 368899999999999999985 4568899999999999998888876664 88899999997 455899999999
Q ss_pred HHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 344 LLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 344 ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
+++.+....+. +++... .....|++...+.++.++++...+. ++...+. .++++++++.|.+++ +..
T Consensus 225 ~i~~l~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~al~~~~~~--l~~~~~~-~~~~~~l~~~L~~~g-~~~ 291 (370)
T TIGR02539 225 WEDIVLRKSRY-SPVKEV---ELLGCTSRGAPIVTMMASFPHVVER--VKRWDEE-VKKTRWFVAELEDIG-FIQ 291 (370)
T ss_pred HHhhhcccccC-Ccccee---eeecccccccHHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHhCC-cEE
Confidence 99887654332 122211 0112333334455555566654443 4443333 344568999999885 544
No 51
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.69 E-value=5.7e-15 Score=164.49 Aligned_cols=285 Identities=13% Similarity=0.095 Sum_probs=177.0
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHH-HHHHHHHHHhCCCCCCEEEE-E-cCCcch
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINN-DTQAALRELLNVPNNYKILF-L-QGGGTG 126 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~-~ar~~La~Ll~~p~~yeI~f-~-~gggT~ 126 (621)
+...++.|.--.+++.|++++...+.+-.+.|.+-- ..+.+.++.+.++ .++++.+++|+.... .++| . +.+|+.
T Consensus 34 ~~~l~liasen~~s~~v~~a~~s~~~~ky~~G~~g~-r~~~G~~~~d~lE~~~~~~~~~~f~~~~~-~~~~nv~~~SG~~ 111 (475)
T PLN03226 34 WKGLELIASENFTSRAVMEALGSCLTNKYSEGLPGA-RYYGGNEYIDQIETLCQKRALEAFRLDPE-KWGVNVQPLSGSP 111 (475)
T ss_pred HcCeeEecCCccCCHHHHHHHhhHHhccccCCCCCC-cCcCCChhHHHHHHHHHHHHHHHhCCCcc-eeEEecCcCchHH
Confidence 457889999999999999999999955444443211 1122333444444 578889999998764 3433 2 245666
Q ss_pred hhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEE---EEcChHHHHHHHHHHHhCCceeeecccc
Q psy8733 127 MFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADY---VVTGSWSKKAAAEAEKYGKVNLVIPKVS 203 (621)
Q Consensus 127 ~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~---v~tG~~~~~~~~~a~~~G~~~~~~~~~~ 203 (621)
++. ++..+|+++||++.. -..|+++|.+.....+.+.......
T Consensus 112 AN~-------------------------------av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~--- 157 (475)
T PLN03226 112 ANF-------------------------------AVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFE--- 157 (475)
T ss_pred HHH-------------------------------HHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEE---
Confidence 333 344455555555543 2346677655433322221100000
Q ss_pred cccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccc
Q psy8733 204 KYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNE 283 (621)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnE 283 (621)
.++|. +. +-...+|.+.+ +......++++|.+ .+
T Consensus 158 ------------------~~~y~----~~-~~~g~iD~d~L---------------------e~~l~~~~pklIv~--~~ 191 (475)
T PLN03226 158 ------------------SMPYR----LD-ESTGLIDYDKL---------------------EKKAMLFRPKLIIA--GA 191 (475)
T ss_pred ------------------eeeee----ec-CCCCCcCHHHH---------------------HHHHhhcCCeEEEE--ec
Confidence 00000 00 00000111111 11111235666544 46
Q ss_pred ccccccccc-----ccccCCCcEEEecccccCCCccccc-----ccceEEecccccc-CCCccEEEEEchhHHhhhCCCC
Q psy8733 284 TVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-----KFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPIT 352 (621)
Q Consensus 284 T~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-----~~gvl~asaqK~l-GP~Glg~livr~~ll~~~~~~~ 352 (621)
+++|...|+ +++++|++++||++|++|..+.+.. ..|++++++|||| ||.| |+++.+++.++...+..
T Consensus 192 S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~GP~G-g~I~~~~~~~~~~~~g~ 270 (475)
T PLN03226 192 SAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPRG-GMIFFRKGPKPPKGQGE 270 (475)
T ss_pred CcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCcccccCCCc-eEEEEchhhcccccCCC
Confidence 778888885 5678999999999999999876643 4579999999999 7999 99999988765543332
Q ss_pred Cceeecccccc---CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 353 PTVFHFKINAD---NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 353 P~~ld~~~~~~---~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
+.+.+|..... ....-++|+...++++.++|+++.+. |.+.+.++..+++++|++.|.+. |+.+.
T Consensus 271 ~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~-~~~~~~~~~~~na~~L~~~L~~~-G~~l~ 338 (475)
T PLN03226 271 GAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTP-EFKAYQKQVKANAAALANRLMSK-GYKLV 338 (475)
T ss_pred ccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHHHHHHHhC-CCEEE
Confidence 23334421111 11223689999999999999999988 89999999999999999999885 46543
No 52
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.69 E-value=2.6e-15 Score=162.56 Aligned_cols=267 Identities=12% Similarity=0.092 Sum_probs=161.6
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHH-HHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINND-TQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~-ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
++..++.|||..+|+.|++++.+++....+.|.+- .....+..+.+.+++ +++.+++++|++.. .|++ +|||.
T Consensus 19 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~g~~~-~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~-~v~~--~sgt~-- 92 (402)
T cd00378 19 RETLELIASENFTSPAVMEAMGSDLTNKYAEGYPG-KRYYGGCEYVDEIEDLAIERAKKLFGAEYA-NVQP--HSGSQ-- 92 (402)
T ss_pred HhCeeeeccCCcCCHHHHHHhcccccccccCCCCC-CcccCCchHHHHHHHHHHHHHHHHhCCCce-eeec--CCcHH--
Confidence 46899999999999999999998874333222221 011124566666776 78889999999753 3433 45788
Q ss_pred hHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHH---HHHHHHHhCCceeeecccccc
Q psy8733 129 AAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKK---AAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 129 ~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~---~~~~a~~~G~~~~~~~~~~~~ 205 (621)
+++++...+ +++||+|++..- .+.++. ....++..|......+.
T Consensus 93 ---a~~~~l~~l-~~~Gd~Vl~~~~-------------------------~~~~~~~~~~~~~~~~~g~~~~~~~~---- 139 (402)
T cd00378 93 ---ANLAVYFAL-LEPGDTIMGLDL-------------------------SHGGHLTHGSFTKVSASGKLFESVPY---- 139 (402)
T ss_pred ---HHHHHHHHh-cCCCCEEEEecC-------------------------ccCccccccccccccccceeEEEecC----
Confidence 344433333 456666666532 111110 00012333432111110
Q ss_pred cccCCCCCCCCCCCccccccccCccccCcc-chhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSW-SKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNET 284 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w-~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET 284 (621)
+.++ ...++++++ +..-..+++++|.+++..+
T Consensus 140 --------------------------~~~~~~~~id~~~l---------------------~~~i~~~~~~~v~~~~~~~ 172 (402)
T cd00378 140 --------------------------GVDPETGLIDYDAL---------------------EKMALEFKPKLIVAGASAY 172 (402)
T ss_pred --------------------------CcCcccCCcCHHHH---------------------HHHHHhCCCCEEEecCccc
Confidence 0000 011222221 1111135688888887655
Q ss_pred cccccccc-----ccccCCCcEEEecccccCC-----CcccccccceEEecccccc-CCCccEEEEEchhHHhhhCCCCC
Q psy8733 285 VDGVEFNY-----IPDSQGIPLVSDMSSNFLS-----RKFDVSKFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPITP 353 (621)
Q Consensus 285 ~tGv~~p~-----i~~~~g~llvvDavSs~G~-----~pIDv~~~gvl~asaqK~l-GP~Glg~livr~~ll~~~~~~~P 353 (621)
|+..|+ +++++|+++++|++++.|. .+.+++..|++++|.||++ ||.|.++++.++++.+++....
T Consensus 173 --~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~~~dv~~~s~sK~l~G~~gg~i~~~~~~~~~~l~~~~- 249 (402)
T cd00378 173 --PRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGLILTRKGELAKKINSAV- 249 (402)
T ss_pred --CCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCcccCCcEEEeccccCCCCCCceEEEeccHHHHHHHHHHh-
Confidence 666664 4568999999999986653 2444544468999999999 7888666665558877653211
Q ss_pred ceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 354 TVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 354 ~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
.....+||+...+.++..++..+.+. +.+++.++.+++++++++.|.+. |+.
T Consensus 250 ----------~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~ 301 (402)
T cd00378 250 ----------FPGLQGGPHLHVIAAKAVALKEALEP-EFKAYAKQVVENAKALAEALKER-GFK 301 (402)
T ss_pred ----------CccccCCchHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHhC-CCe
Confidence 11234577777888888888877664 46788888999999999999887 454
No 53
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.69 E-value=3e-15 Score=163.18 Aligned_cols=268 Identities=13% Similarity=0.093 Sum_probs=161.9
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHH-HHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINND-TQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~-ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
+..+++.|++.++|++|++++..++.+....|.+. .....+.++.+.+++ +|+.+++++|++.. .|++ ++||.
T Consensus 25 ~~~~~l~~~~n~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~la~~~g~~~~-~i~~--~sgt~-- 98 (416)
T PRK00011 25 EEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPG-KRYYGGCEYVDVVEQLAIDRAKELFGAEYA-NVQP--HSGSQ-- 98 (416)
T ss_pred hcCeeeecccCcCCHHHHHHHhchhhcccccCCCC-ccccccchHHHHHHHHHHHHHHHHhCCCce-eeec--CCchH--
Confidence 45789999999999999999988865432222211 112223445666766 89999999999763 4544 45787
Q ss_pred hHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccccc
Q psy8733 129 AAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSI 208 (621)
Q Consensus 129 ~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~ 208 (621)
+++++...+ +++||+|++..- .|.+ .++..........|...+..+.
T Consensus 99 ---al~~~l~~l-~~~gd~Vl~~~~----~~~~------------------~~~~~~~~~~~~~g~~~~~~~~------- 145 (416)
T PRK00011 99 ---ANAAVYFAL-LKPGDTILGMDL----AHGG------------------HLTHGSPVNFSGKLYNVVSYGV------- 145 (416)
T ss_pred ---HHHHHHHHh-cCCCCEEEEecc----ccCC------------------ccccccccccccceeeEeecCc-------
Confidence 344443334 567777776642 1100 0000000000111211111000
Q ss_pred CCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCC-CCceEEEEeccccccc
Q psy8733 209 PDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRD-PEASYLYYCDNETVDG 287 (621)
Q Consensus 209 ~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~-~~t~~V~~thnET~tG 287 (621)
+ +....++++++ +. .++ .++++|.+++.+ +|
T Consensus 146 -----------------------~-~~~~~~d~~~l---------------------~~-~i~~~~~k~v~~~~~~--~~ 177 (416)
T PRK00011 146 -----------------------D-EETGLIDYDEV---------------------EK-LALEHKPKLIIAGASA--YS 177 (416)
T ss_pred -----------------------C-cccCCcCHHHH---------------------HH-HHHhcCCCEEEECCCc--CC
Confidence 0 00001122221 11 122 368888887644 46
Q ss_pred ccccc-----ccccCCCcEEEecccccCCC-----cccccccceEEecccccc-CCCccEEEEEchhHHhhhCCCCCcee
Q psy8733 288 VEFNY-----IPDSQGIPLVSDMSSNFLSR-----KFDVSKFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTVF 356 (621)
Q Consensus 288 v~~p~-----i~~~~g~llvvDavSs~G~~-----pIDv~~~gvl~asaqK~l-GP~Glg~livr~~ll~~~~~~~P~~l 356 (621)
...|+ +++++|+++++|+++++|.. +.+++..|++++|.||++ ||.|-.++..++++++++....
T Consensus 178 ~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~~~di~~~S~~K~l~g~~gg~i~~~~~~~~~~l~~~~---- 253 (416)
T PRK00011 178 RPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRGGLILTNDEELAKKINSAV---- 253 (416)
T ss_pred CccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCCCCcEEEecCCcCCCCCCceEEEeCCHHHHHHHHHHh----
Confidence 66664 45688999999999887653 556665569999999999 6887655554578877653211
Q ss_pred eccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 357 HFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 357 d~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
....++||....++++..++..+.+. +++.+.++.+++++++++.|++.+ +.
T Consensus 254 -------~~~~~~~~~~~~~aa~~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g-~~ 305 (416)
T PRK00011 254 -------FPGIQGGPLMHVIAAKAVAFKEALEP-EFKEYAQQVVKNAKALAEALAERG-FR 305 (416)
T ss_pred -------CccccCCccHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHhCC-Ce
Confidence 11234577777888888888776666 789999999999999999999874 53
No 54
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.66 E-value=2.5e-14 Score=154.34 Aligned_cols=144 Identities=14% Similarity=0.175 Sum_probs=104.0
Q ss_pred CCCCceEEEEecccccccccccc------ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCC-----CccE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY------IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGP-----AGIT 336 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~------i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP-----~Glg 336 (621)
+++++++|.+++.+ .+|+..|. +++++|+++|+|++++.+..+.+..+++ ++++|+|||++| +|+|
T Consensus 156 i~~~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~K~~~p~g~Ggp~~g 234 (398)
T cd00613 156 VSEEVAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTGVPHGGGGPGAG 234 (398)
T ss_pred cCCCeEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEeeccccCCCCCCCCCcee
Confidence 56789999999975 68999874 3468999999999998888888777765 999999999854 7899
Q ss_pred EEEEchhHHhhhCCCCC-----------ceeeccccccC----CCc--cCCchHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy8733 337 VVIVREDLLEYALPITP-----------TVFHFKINADN----NSV--YNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNS 399 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P-----------~~ld~~~~~~~----~s~--~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~ 399 (621)
++++++++++.+.+... .++++...... ..+ ..|.+.....+...+++++.+. |++++.++.
T Consensus 235 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~-g~~~~~~~~ 313 (398)
T cd00613 235 FFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPE-GLKEIAERA 313 (398)
T ss_pred EEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHH-HHHHHHHHH
Confidence 99999999877543211 01111100000 111 1233444555566667777776 899999999
Q ss_pred HHHHHHHHHHHHccCC
Q psy8733 400 LQKSVLLYQEIDNSDK 415 (621)
Q Consensus 400 ~~la~~L~e~L~~~~g 415 (621)
+++++++++.|+++++
T Consensus 314 ~~~~~~l~~~L~~~~~ 329 (398)
T cd00613 314 HLNANYLAKRLKEVGG 329 (398)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999998863
No 55
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=99.62 E-value=5.6e-14 Score=151.39 Aligned_cols=255 Identities=11% Similarity=0.138 Sum_probs=160.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhh
Q psy8733 58 GPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLIS 137 (621)
Q Consensus 58 GPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla 137 (621)
|-+.+|++|+++|.++..+|. . ..++.+++++.+++++|++ +++|+ +|+|. ++++..
T Consensus 21 g~s~~~~~v~~a~~~~~~~~~-----------~---~~~~~~~~~~~~a~~~g~~---~~~~~-~g~t~-----al~~al 77 (363)
T TIGR01437 21 GVSTVSDEVADAQKRGAQNYF-----------E---IKELVNKTGEYIANLLGVE---DAVIV-SSASA-----GIAQSV 77 (363)
T ss_pred CCCCCCHHHHHHHHHHHhcCC-----------C---HHHHHHHHHHHHHHhhCCC---eEEEE-cCHHH-----HHHHHH
Confidence 667799999999999875442 1 2467899999999999985 47776 66888 566655
Q ss_pred hccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChH---HHHHHHHHHHhCCceeeecccccccccCCCCCC
Q psy8733 138 SSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSW---SKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW 214 (621)
Q Consensus 138 ~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~---~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~ 214 (621)
.++ +++||+|++.. +.... .+++++.. ..++| +..|...+...|...+..+
T Consensus 78 ~al-~~~Gd~~~~~~---------~~~s~-~~~~eVi~-~~~~~~~~~~~~~~~~~~~g~~~v~v~-------------- 131 (363)
T TIGR01437 78 AAV-ITRGNRYLVEN---------LHDSK-IEVNEVVL-PKGHNVDYGAPVETMVRLGGGKVVEAG-------------- 131 (363)
T ss_pred HHH-hcCCCcchhhc---------ccccc-cccceEEE-ECccchhcCCchHHHHHhcCCeEEEEc--------------
Confidence 555 67788776532 12222 23444443 22222 2123334444554322211
Q ss_pred CCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEE-ecccccccccccc-
Q psy8733 215 NRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYY-CDNETVDGVEFNY- 292 (621)
Q Consensus 215 ~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~-thnET~tGv~~p~- 292 (621)
.+|. +++|++ + -.++++|+++.+ ++..+.+|...|+
T Consensus 132 ------------------~~~~--~d~~~l---------------------e-~ai~~~t~ai~~v~~~~~~~g~~~~~~ 169 (363)
T TIGR01437 132 ------------------YANE--CSAEQL---------------------E-AAITEKTAAILYIKSHHCVQKSMLSVE 169 (363)
T ss_pred ------------------CCCC--CCHHHH---------------------H-HhcChhceEEEEEecCCCCcCCcCCHH
Confidence 0111 222221 1 136678887664 4445678988885
Q ss_pred ----ccccCCCcEEEecccccCCCccc-cccc--ceEEecccccc-CCCccEEEEEchhHHhhhCCCCCceeeccccccC
Q psy8733 293 ----IPDSQGIPLVSDMSSNFLSRKFD-VSKF--GVIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTVFHFKINADN 364 (621)
Q Consensus 293 ----i~~~~g~llvvDavSs~G~~pID-v~~~--gvl~asaqK~l-GP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~ 364 (621)
+++++|+++++|++|+. +++ +.++ |++++|+||++ ||. .|+++.++++++.+.+.... ...
T Consensus 170 ~i~~~a~~~gi~vivD~a~~~---~~~~~~~~g~D~~~~S~~K~l~gp~-~G~l~~~~~~i~~~~~~~~~-------~~~ 238 (363)
T TIGR01437 170 DAAQVAQEHNLPLIVDAAAEE---DLQKYYRLGADLVIYSGAKAIEGPT-SGLVLGKKKYIEWVKLQSKG-------IGR 238 (363)
T ss_pred HHHHHHHHcCCeEEEECCCCC---chHHHHHcCCCEEEEeCCcccCCCc-eEEEEEcHHHHHHHHhccCC-------Ccc
Confidence 45789999999999973 221 1133 59999999988 688 78988888888765321110 001
Q ss_pred CCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 365 NSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 365 ~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
....+|. .+.++.++++++.+. |.+.+.++.++ .+++++.|.+++|+...
T Consensus 239 ~~~~~~~---~~~gl~aAl~~~~~~-~~~~~~~~~~~-~~~l~~~L~~i~g~~~~ 288 (363)
T TIGR01437 239 AMKVGKE---NILGLTAALEQYLST-GKESGAEMVAK-LTPFIEALNTLKGVSAS 288 (363)
T ss_pred eeccCHH---HHHHHHHHHHHHHcc-CcccHHHHHHH-HHHHHHHHhcCCCeEEE
Confidence 1123443 478999999999887 67777766664 55799999998877544
No 56
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=99.57 E-value=7.8e-13 Score=145.76 Aligned_cols=144 Identities=13% Similarity=0.132 Sum_probs=96.9
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEE--ecccccCCCcccccccc--eEEeccccc-----cCCCcc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVS--DMSSNFLSRKFDVSKFG--VIIAGAQKN-----IGPAGI 335 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvv--DavSs~G~~pIDv~~~g--vl~asaqK~-----lGP~Gl 335 (621)
+++++++|.+++- |.+|...|+ +++++|+++++ |.+ ++|..+.+ .+++ ++++++||| +|.+|+
T Consensus 201 i~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~~~-~~~~~D~~~~s~~k~~~~~~~~Gpg~ 277 (447)
T PRK00451 201 VDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLKPP-GEYGADIVVGEGQPLGIPLSFGGPYL 277 (447)
T ss_pred cCCCeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCCCc-ccCCCCEEEECCCcCCCCCCCCCCCc
Confidence 5678999999985 899999986 45678999988 766 45654422 4454 899999997 665699
Q ss_pred EEEEEchhHHhhhCCCCC----------ce-eecccc----ccCCCccCCchHHHH--HHHHHHHHHHHhhCCHHHHHHH
Q psy8733 336 TVVIVREDLLEYALPITP----------TV-FHFKIN----ADNNSVYNTPPTFVV--HVIQRVFAWIKRQGGLAKMEQN 398 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P----------~~-ld~~~~----~~~~s~~~TP~v~~I--~aL~~aL~~i~~~gGl~~i~~r 398 (621)
|++++++++++++.+... .| ++.... .....+.+++....+ .+...+++++.++ |++++.++
T Consensus 278 G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~-g~~~~~~~ 356 (447)
T PRK00451 278 GFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPE-GLRELAEQ 356 (447)
T ss_pred hHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHH-HHHHHHHH
Confidence 999999999887643210 01 110000 011122222222223 3333456777777 89999999
Q ss_pred HHHHHHHHHHHHHccCCcc
Q psy8733 399 SLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 399 ~~~la~~L~e~L~~~~g~~ 417 (621)
+.+++++++++|.+++|+.
T Consensus 357 ~~~~~~~l~~~L~~~~g~~ 375 (447)
T PRK00451 357 NHQKAHYLAERLAEIGGVE 375 (447)
T ss_pred HHHHHHHHHHHHhhcCCEE
Confidence 9999999999999887554
No 57
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.57 E-value=8.4e-14 Score=147.09 Aligned_cols=111 Identities=15% Similarity=0.106 Sum_probs=94.0
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc--------ccceEEeccccccC-CCccEEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS--------KFGVIIAGAQKNIG-PAGITVV 338 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~--------~~gvl~asaqK~lG-P~Glg~l 338 (621)
++++|.+++.+|++|...|+ +++++|+++++|++++.+..+++.. ..|++.++.||+++ |.|+|++
T Consensus 148 ~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~ 227 (345)
T cd06450 148 NPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAV 227 (345)
T ss_pred CcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHH
Confidence 67899999999999999886 4568899999999999998876542 34588999999995 8999988
Q ss_pred EEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 339 IVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 339 ivr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
+++ +.++.++++++... |++++.++..++++++++.|.+++++..
T Consensus 228 ~~~----------------------------------~~~~~~~l~~l~~~-g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 272 (345)
T cd06450 228 LVR----------------------------------ALKLWATLRRFGRD-GYGEHIDRIVDLAKYLAELIRADPGFEL 272 (345)
T ss_pred HHH----------------------------------HHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 766 66677788988877 8999999999999999999999876643
No 58
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.56 E-value=6.3e-13 Score=140.29 Aligned_cols=129 Identities=12% Similarity=0.093 Sum_probs=96.3
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCc--------cccccc--ceEEeccccccCCCccE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRK--------FDVSKF--GVIIAGAQKNIGPAGIT 336 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~p--------IDv~~~--gvl~asaqK~lGP~Glg 336 (621)
+.+++|.+++..+.+|+..|+ +++++|+++|+|+++++|..+ ++.... ++++.|.||++|++| |
T Consensus 131 ~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-G 209 (349)
T cd06454 131 YGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG-G 209 (349)
T ss_pred CCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcccC-C
Confidence 356788888888899999986 456899999999999987653 333333 488899999999887 8
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+++.++++.+++......+ ...++++...++++.++++.+.+ .+.+.++..++.+++++.|.+++
T Consensus 210 ~i~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~l~~~l~~~g 274 (349)
T cd06454 210 YIAGSKELIDYLRSYARGF----------IFSTSLPPAVAAAALAALEVLQG---GPERRERLQENVRYLRRGLKELG 274 (349)
T ss_pred EEECCHHHHHHHHHhchhh----------hccCCCCHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888876653211100 11235666778888999998865 36778899999999999998763
No 59
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.55 E-value=4.4e-13 Score=144.40 Aligned_cols=127 Identities=13% Similarity=0.216 Sum_probs=91.8
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc----ccc-----eEEeccccccCCCccEE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS----KFG-----VIIAGAQKNIGPAGITV 337 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~----~~g-----vl~asaqK~lGP~Glg~ 337 (621)
+++.+|.+++..+.+|.+.|+ +++++|++++||.+|++|..+.+.. +|+ +++.+-.|.+||.|.++
T Consensus 142 ~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G~~v 221 (370)
T PRK05937 142 FGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMGAAL 221 (370)
T ss_pred CCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCceEE
Confidence 346688899999999999996 4567899999999999999888863 343 45677779999999998
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
++.++ ..+.+....+.+ ....+.|...++++.++++++.+. | +.+.++.+++.+++++.|+
T Consensus 222 l~~~~-~~~~~~~~~~~~----------~~s~~~~~~~~~a~~aal~~l~~~-~-~~~~~~l~~l~~~l~~~l~ 282 (370)
T PRK05937 222 LSSSE-VKQDLMLNSPPL----------RYSTGLPPHLLISIQVAYDFLSQE-G-ELARKQLFRLKEYFAQKFS 282 (370)
T ss_pred EcCHH-HHHHHHHhCCCC----------eecCCCCHHHHHHHHHHHHHHHhC-c-HHHHHHHHHHHHHHHHhcC
Confidence 87754 333222111111 111334556789999999999887 5 5667778888888877553
No 60
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=99.52 E-value=6.7e-12 Score=140.28 Aligned_cols=140 Identities=18% Similarity=0.190 Sum_probs=95.5
Q ss_pred CCCCceEEEEeccccccccc-ccc-----ccccCCCcEEEecccccCCC-cccccccc--eEEeccccccC-C-----Cc
Q psy8733 270 RDPEASYLYYCDNETVDGVE-FNY-----IPDSQGIPLVSDMSSNFLSR-KFDVSKFG--VIIAGAQKNIG-P-----AG 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~-~p~-----i~~~~g~llvvDavSs~G~~-pIDv~~~g--vl~asaqK~lG-P-----~G 334 (621)
+++++++|.+++ .+.+|+. .|+ +++++|++++||++++++.. .++..++| ++++++||+|| | ||
T Consensus 205 i~~~t~~V~v~~-Pn~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~ 283 (481)
T PRK04366 205 VGEDTAALMLTN-PNTLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPG 283 (481)
T ss_pred cccCCeEEEEeC-CCCccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCEEEEechhhcCCCCCCCCCC
Confidence 567899998886 4588986 354 34578999999999986632 45777776 99999999985 5 67
Q ss_pred cEEEEEchhHHhhhCCCC------Cceeecccccc-CCCccCCchHHHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHH
Q psy8733 335 ITVVIVREDLLEYALPIT------PTVFHFKINAD-NNSVYNTPPTFVVHVIQRVFAWIKRQG--GLAKMEQNSLQKSVL 405 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~------P~~ld~~~~~~-~~s~~~TP~v~~I~aL~~aL~~i~~~g--Gl~~i~~r~~~la~~ 405 (621)
+|++++|++++.++.+.. ...+++...+. ......|++. .++..++.|+...| |+.++.+++.+++++
T Consensus 284 ~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~---l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~ 360 (481)
T PRK04366 284 SGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNF---GVLVRAYAYIRSLGAEGLREVSEDAVLNANY 360 (481)
T ss_pred eeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999988764321 11122211000 1223345554 44445555555442 677888889999999
Q ss_pred HHHHHHcc
Q psy8733 406 LYQEIDNS 413 (621)
Q Consensus 406 L~e~L~~~ 413 (621)
|+++|.++
T Consensus 361 l~~~L~~~ 368 (481)
T PRK04366 361 LKARLKDI 368 (481)
T ss_pred HHHHhHhh
Confidence 99999875
No 61
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.52 E-value=1.1e-12 Score=145.52 Aligned_cols=132 Identities=15% Similarity=0.163 Sum_probs=106.0
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccc--------cccceEEecccccc-CCCcc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDV--------SKFGVIIAGAQKNI-GPAGI 335 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv--------~~~gvl~asaqK~l-GP~Gl 335 (621)
+.+.++.|+++|.++..+ ..|+ +++++|++++||+++++|..+.++ ...|+++++.||+| ||.|
T Consensus 216 ~~~~~plvii~g~S~~~~-~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~G- 293 (493)
T PRK13580 216 AREFKPLILVAGYSAYPR-RVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRG- 293 (493)
T ss_pred HhhcCCEEEEeCccccCC-CcCHHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCCCCcEEEeCChhhccCCCe-
Confidence 556788999999999855 6675 567899999999999999988766 23469999999999 8998
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
|+++.++++.+.+.. . .+..++||..+.++++..+++.+.+. +.....++..+++++|.+.|.+.+
T Consensus 294 G~I~~~~~l~~~L~~-----------a-~P~i~gg~l~p~iAA~avAl~e~~~~-ef~~y~~~l~~Na~~La~~L~~~G- 359 (493)
T PRK13580 294 GLVLAKKEYADAVDK-----------G-CPLVLGGPLPHVMAAKAVALAEARTP-EFQKYAQQVVDNARALAEGFLKRG- 359 (493)
T ss_pred EEEEecHHHHHHHhh-----------C-CCcccCCCccHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 999999998776521 1 13456778778899998899988765 456788899999999999998875
Q ss_pred cc
Q psy8733 416 FY 417 (621)
Q Consensus 416 ~~ 417 (621)
|.
T Consensus 360 ~~ 361 (493)
T PRK13580 360 AR 361 (493)
T ss_pred CC
Confidence 53
No 62
>PLN03032 serine decarboxylase; Provisional
Probab=99.52 E-value=4.4e-13 Score=145.15 Aligned_cols=269 Identities=12% Similarity=0.085 Sum_probs=170.8
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEE--EEEcCCcchhh
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKI--LFLQGGGTGMF 128 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI--~f~~gggT~~~ 128 (621)
+.++=.|--......++++|.+++.+..+.+.+. +-.+....++.+++++.+++++|++++ ++ +|+ +|||+
T Consensus 24 ~~~~gy~~~~~~~~~~~~~~~~~~~~~~gnP~s~---~~~g~~a~~~e~~v~~~ia~llg~~~~-~~~G~fT-sGGTE-- 96 (374)
T PLN03032 24 SVHFGYPYNLDFDYGELSQLMKYSINNLGDPFIE---SNYGVHSRQFEVGVLDWFARLWELEKD-EYWGYIT-TCGTE-- 96 (374)
T ss_pred hhccCCCchhccChHHHHHHHHhcccCCCCCccc---CCCCccHHHHHHHHHHHHHHHhCCCCc-cCCEEEe-CchHH--
Confidence 3455555555667778999999886544444332 222445678899999999999999764 45 776 67999
Q ss_pred hHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHH-HHHHHhCCceeeecccccccc
Q psy8733 129 AAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAA-AEAEKYGKVNLVIPKVSKYVS 207 (621)
Q Consensus 129 ~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~-~~a~~~G~~~~~~~~~~~~~~ 207 (621)
|. ++|- + + ..+.. ++.+ +..+.-+|... +.++.+|.....++..
T Consensus 97 ---aN-l~al--------------------~-~-ar~~~-~~~~---vi~s~~~H~Sv~kaa~~lg~~~~~V~~d----- 141 (374)
T PLN03032 97 ---GN-LHGI--------------------L-V-GREVF-PDGI---LYASRESHYSVFKAARMYRMEAVKVPTL----- 141 (374)
T ss_pred ---HH-HHHH--------------------H-H-HHHhC-CCcE---EEeCCCceeHHHHHHHHcCCCCeEeeeC-----
Confidence 33 3321 1 1 12211 2222 23333333332 3344455421111110
Q ss_pred cCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCC---CceEEEEecccc
Q psy8733 208 IPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP---EASYLYYCDNET 284 (621)
Q Consensus 208 ~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~---~t~~V~~thnET 284 (621)
. .-.+++++++ + .+++ ++.+|.+++..|
T Consensus 142 --------~-------------------~g~id~~~L~--------------------~--~i~~~~~~~~lvv~tagtt 172 (374)
T PLN03032 142 --------P-------------------SGEIDYDDLE--------------------R--ALAKNRDKPAILNVNIGTT 172 (374)
T ss_pred --------C-------------------CCcCcHHHHH--------------------H--HHHHcCCCCEEEEEEecCc
Confidence 0 0012222210 0 1222 577899999999
Q ss_pred cccccccc-----ccccCC-----CcEEEecccccCCCcc-------ccc-ccceEEeccccccC-CCccEEEEEchhHH
Q psy8733 285 VDGVEFNY-----IPDSQG-----IPLVSDMSSNFLSRKF-------DVS-KFGVIIAGAQKNIG-PAGITVVIVREDLL 345 (621)
Q Consensus 285 ~tGv~~p~-----i~~~~g-----~llvvDavSs~G~~pI-------Dv~-~~gvl~asaqK~lG-P~Glg~livr~~ll 345 (621)
.+|++.|+ +++++| ++++|||+++.+..|+ |+. ..|.+.+++||++| |.|+|++++|++.+
T Consensus 173 ~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~ 252 (374)
T PLN03032 173 VKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKHV 252 (374)
T ss_pred CCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchhh
Confidence 99999996 345665 5799999999999886 442 24589999999999 99999999999887
Q ss_pred hhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 346 EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 346 ~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
+.+.. .+.|+.... ....+|-+-+.+..+-.+|+.+-.+ |..++.++..++++++.+.|.+.+ +.
T Consensus 253 ~~~~~-~~~Yl~~~d----~ti~gSR~g~~~l~~w~~l~~~G~~-g~~~~~~~~~~~a~~l~~~l~~~~-~~ 317 (374)
T PLN03032 253 KALSQ-NVEYLNSRD----ATIMGSRNGHAPLYLWYTLRRKGYR-GIKRDVQHCMRNAHYLKDRLTEAG-LT 317 (374)
T ss_pred Hhhcc-CCcccCCCC----CcccCCCchHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHhCC-Cc
Confidence 65532 333443221 2233555555666667778888776 899999999999999999999864 54
No 63
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.51 E-value=3e-12 Score=152.11 Aligned_cols=263 Identities=14% Similarity=0.175 Sum_probs=173.4
Q ss_pred CCceeccCCCCC----CCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcc
Q psy8733 50 HPVINFGAGPAK----LPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGT 125 (621)
Q Consensus 50 ~~~~lf~aGPs~----~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT 125 (621)
.++|+...|-.. .|+.|++++.+...-|...+ ++.. .-|+...+.+.+.+..+++|+|++.. ++.|+. ++|
T Consensus 101 N~~~~~fiG~G~y~~~~P~~v~~~i~~~~~~~Tayt--PYqa-EisQG~lqal~~~Qt~ia~LtG~~~a-naSL~d-~aT 175 (993)
T PLN02414 101 NKVFKSYIGMGYYNTHVPPVILRNILENPGWYTQYT--PYQA-EIAQGRLESLLNYQTMITDLTGLPMS-NASLLD-EGT 175 (993)
T ss_pred CCccccccCCCCCCccCCHHHHHHHHhChHHHhhcC--CCch-HHHHHHHHHHHHHHHHHHHHhCCChh-hEeecC-ChH
Confidence 345666666665 88888888887654444322 2211 22456778899999999999999765 688874 689
Q ss_pred hhhhHHHHHHhhhccCCC--CCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccc
Q psy8733 126 GMFAAVAMNLISSSMNVP--NNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVS 203 (621)
Q Consensus 126 ~~~~a~alNlla~~~~~~--~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~ 203 (621)
.++|++.+ +++++ ++|+|++.+. .+ +.|+. -|...|++.|...++.+..
T Consensus 176 Aaaea~~~-----a~~~~~g~~~~VlVs~~----~h---P~~~~----------------v~~t~a~~~GieV~~v~~~- 226 (993)
T PLN02414 176 AAAEAMAM-----CNNILKGKKKKFLIASN----CH---PQTID----------------VCQTRADGLGLEVVVADEK- 226 (993)
T ss_pred HHHHHHHH-----HHhcccCCCCEEEEcCc----cC---HhHHH----------------HHHHhhhhcCCEEEEecch-
Confidence 86665332 33444 4477888764 22 33332 2455667777643332210
Q ss_pred cccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccc
Q psy8733 204 KYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNE 283 (621)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnE 283 (621)
+.+ ..++++ ...++|+-
T Consensus 227 ------------------------------------------------------------~~~--~~~~~v-~~vlvq~P 243 (993)
T PLN02414 227 ------------------------------------------------------------DFD--YSSGDV-CGVLVQYP 243 (993)
T ss_pred ------------------------------------------------------------hhc--cccCce-EEEEEecC
Confidence 000 011122 23458888
Q ss_pred ccccccccc--c---cccCCCcEEEecccccCCCcc-cccccc--eEEeccccccCCCc-----cEEEEEchhHHhhhCC
Q psy8733 284 TVDGVEFNY--I---PDSQGIPLVSDMSSNFLSRKF-DVSKFG--VIIAGAQKNIGPAG-----ITVVIVREDLLEYALP 350 (621)
Q Consensus 284 T~tGv~~p~--i---~~~~g~llvvDavSs~G~~pI-Dv~~~g--vl~asaqK~lGP~G-----lg~livr~~ll~~~~~ 350 (621)
+.+|.+.|+ | ++++|++++| +++.++..++ ++.++| ++++++|||++|.| +|++++|+++...+..
T Consensus 244 ~~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r~~Pg 322 (993)
T PLN02414 244 ATDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRLMPG 322 (993)
T ss_pred CCCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccccCCCCCCCCeeEEEECHHHHhhCCC
Confidence 889999996 3 4678999999 8888888888 588887 99999999996666 8999999998654432
Q ss_pred CCCceeecccc-------------ccCC--CccCCchHHHHHHHHHHHHHH-----HhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 351 ITPTVFHFKIN-------------ADNN--SVYNTPPTFVVHVIQRVFAWI-----KRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 351 ~~P~~ld~~~~-------------~~~~--s~~~TP~v~~I~aL~~aL~~i-----~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
.+..+... .+.+ ..-+|.|+-...+|.+++..+ ..+ |++++.+|..+++.++++.|
T Consensus 323 ---riVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~-Gl~~Ia~ri~~la~~l~~~L 398 (993)
T PLN02414 323 ---RIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGVFAAGL 398 (993)
T ss_pred ---cccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHH
Confidence 12222110 0111 123699997777777766533 335 89999999999999999999
Q ss_pred HccC
Q psy8733 411 DNSD 414 (621)
Q Consensus 411 ~~~~ 414 (621)
++.+
T Consensus 399 ~~~G 402 (993)
T PLN02414 399 KKLG 402 (993)
T ss_pred hhcC
Confidence 8754
No 64
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=99.50 E-value=2e-14 Score=155.43 Aligned_cols=97 Identities=18% Similarity=0.248 Sum_probs=86.7
Q ss_pred hHHHHHhhcccccc-cCCcEEeeecHhHhhhcCC-----CCCceeeeee------cccCCCccCCCchhHHHHHHHHHHH
Q psy8733 448 FFGVIIAGAQKNIG-PAGITVVIVREDLLEYALP-----ITPTVFHFKI------NADNNSVYNTPPTFVVHVIQRVFAW 515 (621)
Q Consensus 448 ~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~-----~~p~~~~y~~------~~~~~s~~nTP~~~~iy~~~~vl~~ 515 (621)
++|++|+|+||||| |.|++++++|++++++... .+|.+++|+. +..++||+||||++.||.+.++|+|
T Consensus 175 ~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~ 254 (374)
T TIGR01365 175 KLDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKW 254 (374)
T ss_pred HCcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHH
Confidence 48999999999999 9999999999999988553 2567787655 2346799999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHhccC
Q psy8733 516 IKRQGGLAKMEQNSLQKSVLLYQEIDNSD 544 (621)
Q Consensus 516 ~~~~gg~~~~~~~~~~ka~~lY~~id~~~ 544 (621)
|+++||++++.+|.+++++++|+++++..
T Consensus 255 i~~egGle~~~~Rh~~~a~~l~~~l~~lg 283 (374)
T TIGR01365 255 AESIGGLKPLIARADDNLAVLEAFVAKNN 283 (374)
T ss_pred HHHccCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999876
No 65
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.48 E-value=2.4e-11 Score=131.10 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=95.5
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCc---------cccc-ccceEEeccccccCCCccEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRK---------FDVS-KFGVIIAGAQKNIGPAGITV 337 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~p---------IDv~-~~gvl~asaqK~lGP~Glg~ 337 (621)
++++|++.+..+.+|...|+ +++++|+++|+|.++++|... .++. +.+++++|.+|++|+...|+
T Consensus 170 ~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~r~G~ 249 (393)
T TIGR01822 170 RHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGASGGF 249 (393)
T ss_pred CceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCCCcEE
Confidence 78899998888899999885 456899999999999887642 2332 34588899999996445699
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
++.++++.+.+.+....+ ...+|++...+.++.++++.+. +++.+.++.+++.+++++.|++.
T Consensus 250 ~~~~~~~~~~l~~~~~~~----------~~~~~~~~~~~~a~~~al~~~~---~~~~~~~~~~~~~~~l~~~L~~~ 312 (393)
T TIGR01822 250 TTARKEVVELLRQRSRPY----------LFSNSLPPAVVGASIKVLEMLE---ASNELRDRLWANTRYFRERMEAA 312 (393)
T ss_pred EEeCHHHHHHHHHhCccc----------eecCCCCHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHc
Confidence 999999887764321111 1124556666777778888763 35778889999999999999876
No 66
>PRK07179 hypothetical protein; Provisional
Probab=99.48 E-value=9.8e-12 Score=135.46 Aligned_cols=128 Identities=13% Similarity=0.123 Sum_probs=96.1
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC---------ccccc-ccceEEeccccccCCCccEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR---------KFDVS-KFGVIIAGAQKNIGPAGITV 337 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~---------pIDv~-~~gvl~asaqK~lGP~Glg~ 337 (621)
++++|.+.+..+.+|...|+ +++++|+++|+|.++++|.. .+++. ..|+++.|.+|++|+. +|+
T Consensus 181 ~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~~-~G~ 259 (407)
T PRK07179 181 GPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAGR-AGI 259 (407)
T ss_pred CCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhcc-CeE
Confidence 46788888888999999996 45688999999999998753 23332 3468889999999864 899
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++.++++.+.+..... ......|++...++++.++++++.+. +.+.++.+++.+++++.|.+++
T Consensus 260 l~~~~~~~~~~~~~~~----------~~~~~~t~~~~~~aa~~aal~~~~~~---~~~~~~l~~~~~~l~~~L~~~g 323 (407)
T PRK07179 260 ITCPRELAEYVPFVSY----------PAIFSSTLLPHEIAGLEATLEVIESA---DDRRARLHANARFLREGLSELG 323 (407)
T ss_pred EEeCHHHHHHHHHhCc----------CeeeCCCCCHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHcC
Confidence 9999888665421110 01123566777888888999988553 5677889999999999998873
No 67
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.47 E-value=2.4e-12 Score=141.30 Aligned_cols=131 Identities=14% Similarity=0.163 Sum_probs=86.3
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccc-----cccceEEecccccc-CCCccEEEEEc
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDV-----SKFGVIIAGAQKNI-GPAGITVVIVR 341 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv-----~~~gvl~asaqK~l-GP~Glg~livr 341 (621)
++++|.+++ +++|...|+ +++++|+++++|+++++|...... +..|++++|.||++ ||.|-.++.-+
T Consensus 168 ~~klVi~~~--~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~GG~v~~~~ 245 (416)
T PRK13034 168 KPKLIIAGF--SAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRGGMILTND 245 (416)
T ss_pred CCeEEEECC--CccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCCCeEEEECc
Confidence 467776543 567887775 457899999999999988764332 34569999999999 69984444434
Q ss_pred hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 342 EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 342 ~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
+++.+++.... +. ....+++...+.++..++..+.+. +..+..++..+++++|++.|.+. |+..
T Consensus 246 ~~~~~~~~~~~-----~~------~~~~~~~~~~~aa~~~al~~~~~~-~~~~~~~~l~~~a~~l~~~L~~~-G~~~ 309 (416)
T PRK13034 246 EEIAKKINSAV-----FP------GLQGGPLMHVIAAKAVAFGEALQP-EFKTYAKQVIANAQALAEVLKER-GYDL 309 (416)
T ss_pred HHHHHHHHhhc-----CC------cccCCccHHHHHHHHHHHHHHhCh-hHHHHHHHHHHHHHHHHHHHHHc-CCEe
Confidence 44444442210 00 111223344556666666666544 45677789999999999999887 4644
No 68
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.45 E-value=7.7e-12 Score=132.66 Aligned_cols=131 Identities=12% Similarity=0.229 Sum_probs=88.0
Q ss_pred CCCCceEEEEecccccccccccc-----cccc--CCCcEEEecccccCCC---cccc-cccc--eEEeccccccCCCc--
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDS--QGIPLVSDMSSNFLSR---KFDV-SKFG--VIIAGAQKNIGPAG-- 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~--~g~llvvDavSs~G~~---pIDv-~~~g--vl~asaqK~lGP~G-- 334 (621)
+++++++|++++..|.||...|. +++. +++++++|.+.+-... +++. +..+ +++.|.+|++|++|
T Consensus 139 ~~~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r 218 (346)
T TIGR01141 139 IDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLR 218 (346)
T ss_pred cCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhhhchhhh
Confidence 45689999999999999999985 3333 4899999999763221 2222 1122 56677799998777
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+|+++.++++++++.+... .+ +.+.+...+ ++.++...+.++++.++.+++.+++++.|++++
T Consensus 219 ~G~~~~~~~~~~~~~~~~~-------------~~-~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 281 (346)
T TIGR01141 219 IGYAIANAEIIDALNKVRA-------------PF-NLSRLAQAA---AIAALRDDDFIEKTVEEINAERERLYDGLKKLP 281 (346)
T ss_pred ceeeecCHHHHHHHHhccC-------------CC-CCCHHHHHH---HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7999999998877643211 11 223333333 344454432377788888888889999998775
Q ss_pred Ccc
Q psy8733 415 KFY 417 (621)
Q Consensus 415 g~~ 417 (621)
|+.
T Consensus 282 g~~ 284 (346)
T TIGR01141 282 GLE 284 (346)
T ss_pred CCE
Confidence 553
No 69
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=99.44 E-value=1.1e-11 Score=131.21 Aligned_cols=140 Identities=14% Similarity=0.089 Sum_probs=86.2
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccc--ccccc-eEEec--cccccC-CCccEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFD--VSKFG-VIIAG--AQKNIG-PAGITVV 338 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pID--v~~~g-vl~as--aqK~lG-P~Glg~l 338 (621)
+++++++|.++| .+|...|+ +++++|+++++|++|++|+...+ +..++ +.++| +||+++ +.| |++
T Consensus 103 i~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~~~~~~g-g~~ 178 (352)
T cd00616 103 ITPRTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHPTKNLTTGEG-GAV 178 (352)
T ss_pred cCcCCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcCCCCCCCcccCc-eEE
Confidence 456889999886 47988885 45689999999999999987543 23333 55555 669995 444 555
Q ss_pred EEc-hhHHhhhCCCC-Ccee-ecc--ccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 339 IVR-EDLLEYALPIT-PTVF-HFK--INADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 339 ivr-~~ll~~~~~~~-P~~l-d~~--~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+.+ +++++++.+.. .... +.. .....+..+.++++.... .....+ +++++.++.+++++++++.|.++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~------~~~~l~-~~~~~~~~~~~~~~~~~~~L~~~ 251 (352)
T cd00616 179 VTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAI------GLAQLE-KLDEIIARRREIAERYKELLADL 251 (352)
T ss_pred EECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHH------HHHHHH-hhHHHHHHHHHHHHHHHHHhcCC
Confidence 555 57776654311 0000 000 000001112233333333 223333 57888889999999999999998
Q ss_pred CCcccCc
Q psy8733 414 DKFYECP 420 (621)
Q Consensus 414 ~g~~~~~ 420 (621)
+|+....
T Consensus 252 ~g~~~~~ 258 (352)
T cd00616 252 PGIRLPD 258 (352)
T ss_pred CCccCCC
Confidence 8776543
No 70
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=99.41 E-value=2.1e-11 Score=135.21 Aligned_cols=211 Identities=16% Similarity=0.280 Sum_probs=136.3
Q ss_pred ccCCCCCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Q psy8733 45 MSSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGG 124 (621)
Q Consensus 45 m~~~~~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~ggg 124 (621)
++++ ..+|+++.|.+++|++|++++.+.+..|.+.... +....|+ ..++.+++.+++++|+++ .++ + +++
T Consensus 77 inat-g~v~~tNlg~s~l~~~vieAv~~~~~~y~~l~~~-l~~g~~g----~r~~~le~~lA~l~gae~--alv-v-~sg 146 (454)
T TIGR00474 77 INAT-GVVLHTNLGRAPLAEEAIEAVTDAARGYSNLEYD-LETGKRG----SRYSHVEGLLCELTGAED--ALV-V-NNN 146 (454)
T ss_pred eCCC-CcEEeccCCCCCCCHHHHHHHHHHHhcccchhcc-ccccccc----hHHHHHHHHHHHHhCCCc--EEE-E-CCH
Confidence 4555 5689999999999999999999999877532211 1112232 457899999999999975 344 4 456
Q ss_pred chhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccc
Q psy8733 125 TGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSK 204 (621)
Q Consensus 125 T~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~ 204 (621)
+. |++++... +.+||+|+++.+ .+.. . .|.|.-. +.+++.|...+..+..
T Consensus 147 ~a-----Ai~l~l~~--l~~GdeVIvs~~----e~v~-----~----------ggs~~i~--~~~~~~G~~~~~v~~~-- 196 (454)
T TIGR00474 147 AA-----AVLLALNT--LAKGKEVIVSRG----ELVE-----I----------GGSFRIP--DVMEQSGAKLVEVGTT-- 196 (454)
T ss_pred HH-----HHHHHHHH--hCCcCEEEECCC----hhhh-----h----------cchhhHH--HHHHHcCCEEEEeCCC--
Confidence 66 56655433 578999999875 2211 0 1334332 3445667543222100
Q ss_pred ccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccc
Q psy8733 205 YVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNET 284 (621)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET 284 (621)
. ..+.+. .+ -.++++|++|.++|..+
T Consensus 197 ---------------------------~-----~~~l~d---------------------le-~aI~~~T~lv~~~h~sN 222 (454)
T TIGR00474 197 ---------------------------N-----RTHLKD---------------------YE-DAITENTALLLKVHTSN 222 (454)
T ss_pred ---------------------------C-----CCCHHH---------------------HH-HhcCcCCEEEEEEccCc
Confidence 0 000000 11 13678899999999887
Q ss_pred c--ccc--cccc-----ccccCCCcEEEecccc---------cCCCcc--cccccc--eEEeccccccCCCccEEEEEch
Q psy8733 285 V--DGV--EFNY-----IPDSQGIPLVSDMSSN---------FLSRKF--DVSKFG--VIIAGAQKNIGPAGITVVIVRE 342 (621)
Q Consensus 285 ~--tGv--~~p~-----i~~~~g~llvvDavSs---------~G~~pI--Dv~~~g--vl~asaqK~lGP~Glg~livr~ 342 (621)
. .|. ..|+ +++++|+++++|+++. +++.|. ++.++| ++++|+||++|.+..|+++.++
T Consensus 223 ~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~~G~i~g~~ 302 (454)
T TIGR00474 223 YRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQAGIIVGKK 302 (454)
T ss_pred ccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCeEEEEEECH
Confidence 5 464 5564 4568999999998743 234454 444454 9999999999644689999999
Q ss_pred hHHhhhC
Q psy8733 343 DLLEYAL 349 (621)
Q Consensus 343 ~ll~~~~ 349 (621)
++++++.
T Consensus 303 ~~i~~l~ 309 (454)
T TIGR00474 303 ELIERLK 309 (454)
T ss_pred HHHHhhh
Confidence 9987664
No 71
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=99.40 E-value=1.3e-12 Score=136.49 Aligned_cols=129 Identities=16% Similarity=0.248 Sum_probs=94.0
Q ss_pred CCCceEEEEecccccccccccc-----ccccCCCcEEEeccccc-----CCCcccccccc--eEEeccccccC-CCccEE
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNF-----LSRKFDVSKFG--VIIAGAQKNIG-PAGITV 337 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~-----G~~pIDv~~~g--vl~asaqK~lG-P~Glg~ 337 (621)
.+++++|.+|+ .|.+|+..|+ +++++|++++||.+++. +..|.+...++ +++.|+||+++ |++.++
T Consensus 152 ~~~~k~v~l~~-p~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~div~~S~hK~l~g~~~~~~ 230 (294)
T cd00615 152 HPDAKAAVITN-PTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQSTHKTLPALTQGSM 230 (294)
T ss_pred CCCceEEEEEC-CCCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcCCcEEEEchhcccchHhHHHH
Confidence 46789999986 5889999996 45688999999999875 33455555554 99999999995 888888
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
+.++++..... .+.... ......||+...+.++..+++++.++ |.+ ..++..++++.+++.|.
T Consensus 231 l~~~~~~~~~~--------~~~~~~-~~~~ttsps~~~~asl~~a~~~~~~~-g~~-~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 231 IHVKGDLVNPD--------RVNEAL-NLHQSTSPSYLILASLDVARAMMALE-GKE-LVEELIELALYARQEIN 293 (294)
T ss_pred HHhCCCcCCHH--------HHHHHH-HHHCCCCcHHHHHHHHHHHHHHHHHH-hHH-HHHHHHHHHHHHHHHHh
Confidence 88876632100 000000 01123589999999999999999776 644 57778889999998775
No 72
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.39 E-value=3.2e-11 Score=143.75 Aligned_cols=230 Identities=13% Similarity=0.108 Sum_probs=152.5
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhccCCCC--CceeEeecCCcchhHHHHHHHhhC
Q psy8733 91 SADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPN--NYKILFLQGGGTGMFAAVAMNLIG 168 (621)
Q Consensus 91 s~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~~~~~--gd~Il~~~~~~~~~feav~~NL~~ 168 (621)
|+--.+.+.+.+..+++|+|++.. ++.++ .++|.++|++. .++.+++ +|+|++.+. .+ |.|+.
T Consensus 116 sQG~Leal~~~Qt~la~LtG~~~a-naSl~-d~aTAa~ea~~-----~a~~~~~~~~~~vlv~~~----~h---P~~~~- 180 (954)
T PRK05367 116 SQGRLEALLNFQTMVADLTGLEIA-NASLL-DEATAAAEAMA-----LAKRVSKSKSNRFFVDDD----VH---PQTLD- 180 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHCCChh-hcccc-ccHHHHHHHHH-----HhhhhccCCCCEEEEcCc----cC---HHHHH-
Confidence 556678899999999999999764 67776 46888666533 3445555 488888764 22 33332
Q ss_pred CCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcc
Q psy8733 169 RTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGK 248 (621)
Q Consensus 169 ~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~ 248 (621)
-|...|++.|...++.+..
T Consensus 181 ---------------v~~t~a~~~G~ev~~~~~~---------------------------------------------- 199 (954)
T PRK05367 181 ---------------VLRTRAEPLGIEVVVGDAA---------------------------------------------- 199 (954)
T ss_pred ---------------HHHHHHHhCCCEEEEecCc----------------------------------------------
Confidence 2445667777654332210
Q ss_pred cccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc--c---cccCCCcEEEecccccCCCcccccccc--e
Q psy8733 249 VNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY--I---PDSQGIPLVSDMSSNFLSRKFDVSKFG--V 321 (621)
Q Consensus 249 ~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~--i---~~~~g~llvvDavSs~G~~pIDv~~~g--v 321 (621)
. + +. +.++ ...++|+.+.+|.+.|+ | ++++|++++||+.+..++...+..++| +
T Consensus 200 --------~------d---~~-~~~~-~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~GaDi 260 (954)
T PRK05367 200 --------K------A---LD-HDDV-FGVLLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADI 260 (954)
T ss_pred --------c------C---CC-cccE-EEEEEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCChhhcCCCE
Confidence 0 0 00 2233 44578888999999996 3 457899999999886666666888887 9
Q ss_pred EEeccccc-----cCCCccEEEEEchhHHhhhCCCCCce-eeccc--------cc-cC--CCccCCchHHHHHHHHHHH-
Q psy8733 322 IIAGAQKN-----IGPAGITVVIVREDLLEYALPITPTV-FHFKI--------NA-DN--NSVYNTPPTFVVHVIQRVF- 383 (621)
Q Consensus 322 l~asaqK~-----lGP~Glg~livr~~ll~~~~~~~P~~-ld~~~--------~~-~~--~s~~~TP~v~~I~aL~~aL- 383 (621)
+++++||| +|-||+|++++|+++..++.+..-.+ .|... +. +. +..-+|.|+....++.+++
T Consensus 261 ~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a 340 (954)
T PRK05367 261 AVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMA 340 (954)
T ss_pred EEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHH
Confidence 99999999 55337999999999887765421111 01000 00 01 1223577776555544444
Q ss_pred ----HHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 384 ----AWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 384 ----~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
.|+..+ |++++.+|...++.++.+.|++. |+.
T Consensus 341 ~~y~~~~g~~-Gl~~Ia~~~~~la~~l~~~L~~~-G~~ 376 (954)
T PRK05367 341 SMYAVYHGPE-GLKAIARRVHRLAAILAAGLRAL-GLE 376 (954)
T ss_pred HHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHhc-Ccc
Confidence 556677 89999999999999999999874 344
No 73
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.37 E-value=2.3e-10 Score=120.99 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=93.0
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccc---------cc--ccceEEeccccccCCCcc
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFD---------VS--KFGVIIAGAQKNIGPAGI 335 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pID---------v~--~~gvl~asaqK~lGP~Gl 335 (621)
+++++|++++..+.+|...|+ +++++|+++|+|.+++.|..+.+ ++ ..++++.|.+|++|++|
T Consensus 145 ~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g- 223 (360)
T TIGR00858 145 ERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYG- 223 (360)
T ss_pred CCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccC-
Confidence 357888888888899988885 45688999999999987754322 22 23478899999999988
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCcc-CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVY-NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~-~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
|+++.++++.+.+..... .... .+++...+.++.++++++.. .+.+.++.+++.+++++.|++++
T Consensus 224 G~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~~l~~~L~~~~ 289 (360)
T TIGR00858 224 AYVAGSQALIDYLINRAR-----------TLIFSTALPPAVAAAALAALELIQE---EPWRREKLLALIARLRAGLEALG 289 (360)
T ss_pred cEEEcCHHHHHHHHHhCc-----------cceecCCCCHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHHHHcC
Confidence 888888888766532111 0111 12344566777888888764 36778899999999999998864
No 74
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=99.36 E-value=3.2e-11 Score=125.05 Aligned_cols=293 Identities=14% Similarity=0.167 Sum_probs=201.1
Q ss_pred chhccccccccchhhh-hhccCCCCCceeccCCCCCCCHHHHHHH-HHHHHhhccCCCcccccccc--cHHHHHHHHHHH
Q psy8733 27 LGNIIRNTYLDSRIHT-TAMSSAAHPVINFGAGPAKLPREVLEEV-KETLLDYESTGISVMEMSHR--SADYTKINNDTQ 102 (621)
Q Consensus 27 ~~~~~~~~~~~~~~~~-~~m~~~~~~~~lf~aGPs~~P~~Vlea~-~~~l~~~~~~g~sv~e~shr--s~~f~~i~~~ar 102 (621)
+..-++.|+.++-.+. ..+.....-+||+...-...|+.+..+. +....+|...+. .+|. .+.+.++=+..-
T Consensus 7 ~~~~l~~Da~dpl~~lr~~f~lp~~viyLdgnSLGa~p~~~~a~~~q~a~deW~~~li----rsw~~a~~~W~~lp~~lg 82 (407)
T COG3844 7 LAECLALDAADPLAKLRDRFALPGGVIYLDGNSLGARPRAVTARLQQVATDEWGEGLI----RSWNKAKADWFDLPERLG 82 (407)
T ss_pred hHHHhhhcccCchhhhHhhccCCCCeEEeeccccccCchHHHHHHHHHHHHHHHhhhh----hhhcccCCchhhchhHHH
Confidence 3444555555443333 2233333568999988888886665554 444445655432 2343 566788888899
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHH---hhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcC
Q psy8733 103 AALRELLNVPNNYKILFLQGGGTGMFAAVAMNL---ISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTG 179 (621)
Q Consensus 103 ~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNl---la~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG 179 (621)
.+|+-|+|+..+ ||+.+ + +|. +|+ |+..++.++|+.|++.+++ |+- |+
T Consensus 83 dklApLiGA~~~-Evvv~-d-tts------~nl~k~L~aalr~~~~r~vIv~E~~----------~fp----------Td 133 (407)
T COG3844 83 DKLAPLIGARAG-EVVVT-D-TTS------INLFKVLAAALRPQEGRRVIVSEGD----------NFP----------TD 133 (407)
T ss_pred HHhhhhhcCCCC-ceEEe-C-Ccc------hHHHHHHHHHhccCCCceEEeecCC----------CCC----------cc
Confidence 999999999876 78876 3 333 565 4456788899999999873 221 11
Q ss_pred hHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCc
Q psy8733 180 SWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKY 259 (621)
Q Consensus 180 ~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~ 259 (621)
.|- +.-.|+-.+.-. + ++.+. +|++
T Consensus 134 ly~--a~g~~~~~~~~~----------------------~--------~~~~~-------~P~~---------------- 158 (407)
T COG3844 134 LYI--AEGLADLLGIGY----------------------D--------LEGVI-------APRA---------------- 158 (407)
T ss_pred hhh--hcchhhhhcccc----------------------c--------ceeee-------ChHH----------------
Confidence 121 111222222100 0 00000 0111
Q ss_pred cCCCCccccCCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc--
Q psy8733 260 VSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-- 330 (621)
Q Consensus 260 ~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-- 330 (621)
+ +-.+++++.+|+++|+..-||-..++ +++++|++++-|-+-|.|..|+|+..+| |.+.++||.|
T Consensus 159 --~----~~~~~dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNg 232 (407)
T COG3844 159 --L----EEAITDDVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNG 232 (407)
T ss_pred --H----HHhhccceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeecccCCCeeeeeeceeccC
Confidence 0 11367789999999999999999996 4578999999999999999999999997 9999999999
Q ss_pred CCCccEEEEEchhHHhhhCCCCCceeeccc------ccc-----CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy8733 331 GPAGITVVIVREDLLEYALPITPTVFHFKI------NAD-----NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNS 399 (621)
Q Consensus 331 GP~Glg~livr~~ll~~~~~~~P~~ld~~~------~~~-----~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~ 399 (621)
||-+.+++++.++..++..+....++.-.. ..+ .+..-+||++....++..+|+...+. ++.++.++.
T Consensus 233 GPGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~-~i~~lR~kS 311 (407)
T COG3844 233 GPGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADV-DITELRKKS 311 (407)
T ss_pred CCCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhc-CHHHHHHhh
Confidence 499999999999998876554333321110 001 12234799999999999999999999 799999999
Q ss_pred HHHHHHHHHHHHccC
Q psy8733 400 LQKSVLLYQEIDNSD 414 (621)
Q Consensus 400 ~~la~~L~e~L~~~~ 414 (621)
..++.++.+-+++.-
T Consensus 312 laLTd~fieLvEa~~ 326 (407)
T COG3844 312 LALTDYFIELVEARC 326 (407)
T ss_pred hHHHHHHHHHHHhcc
Confidence 999999999998753
No 75
>PRK04311 selenocysteine synthase; Provisional
Probab=99.35 E-value=5e-11 Score=132.57 Aligned_cols=210 Identities=14% Similarity=0.243 Sum_probs=134.7
Q ss_pred ccCCCCCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Q psy8733 45 MSSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGG 124 (621)
Q Consensus 45 m~~~~~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~ggg 124 (621)
++++ ..+|+.+.|-+++|++|++++.+.+.+|.+..... ....|+ +.++.+++.+++++|+++ .+++ ++|
T Consensus 82 inat-g~v~~tNlg~s~l~~~v~eav~~~~~~~~~le~~l-~~g~~g----~r~~~~e~~lA~l~Gae~---a~vv-~sg 151 (464)
T PRK04311 82 INAT-GVVLHTNLGRALLSEAAIEAVTEAARGYSNLEYDL-ATGKRG----SRDRALAALLCALTGAED---ALVV-NNN 151 (464)
T ss_pred ecCC-ccEEeccCCCCCCCHHHHHHHHHHHhcccccccch-hhcccc----hHHHHHHHHHHHHhCCCe---EEEE-CCH
Confidence 4555 66889999999999999999999987664322111 112232 457889999999999974 4555 456
Q ss_pred chhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccc
Q psy8733 125 TGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSK 204 (621)
Q Consensus 125 T~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~ 204 (621)
+. |++++..+ +++||+|+++.+ ++ .+- .|.|.- .+.+++.|...+..+..
T Consensus 152 ta-----Al~l~l~~--l~~GdeVIvs~~----e~-------~~~--------ggs~~i--~~~~~~~G~~l~~v~~~-- 201 (464)
T PRK04311 152 AA-----AVLLALNA--LAAGKEVIVSRG----EL-------VEI--------GGAFRI--PDVMRQAGARLVEVGTT-- 201 (464)
T ss_pred HH-----HHHHHHHH--hCCCCEEEEcch----hh-------hhc--------Ccchhh--HHHHHHCCcEEEEECCC--
Confidence 66 56665544 579999998864 22 110 133432 23446667543222100
Q ss_pred ccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccc
Q psy8733 205 YVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNET 284 (621)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET 284 (621)
...+++. .+ -.++++|++|.++|..+
T Consensus 202 --------------------------------~~t~~~d---------------------le-~aI~~~TklV~~vh~sN 227 (464)
T PRK04311 202 --------------------------------NRTHLRD---------------------YE-QAINENTALLLKVHTSN 227 (464)
T ss_pred --------------------------------CCCCHHH---------------------HH-HhcCccCeEEEEEcCCC
Confidence 0000001 11 13678899999999887
Q ss_pred c--ccc--cccc-----ccccCCCcEEEeccccc---------CCCcccccc---c--ceEEeccccccCCCccEEEEEc
Q psy8733 285 V--DGV--EFNY-----IPDSQGIPLVSDMSSNF---------LSRKFDVSK---F--GVIIAGAQKNIGPAGITVVIVR 341 (621)
Q Consensus 285 ~--tGv--~~p~-----i~~~~g~llvvDavSs~---------G~~pIDv~~---~--gvl~asaqK~lGP~Glg~livr 341 (621)
. +|. ..|+ +++++|+++++|+.+.. ++.| ++.+ + |++++|+||++|.+..|+++.+
T Consensus 228 ~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p-~~~~~l~~GaDiv~fSg~K~LgGp~~G~i~g~ 306 (464)
T PRK04311 228 YRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEP-TVQELLAAGVDLVTFSGDKLLGGPQAGIIVGK 306 (464)
T ss_pred ccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCC-chhhHHhcCCcEEEecCcccccCCceEEEEEc
Confidence 4 564 4454 45689999999995432 1344 4433 4 4999999999974468999999
Q ss_pred hhHHhhhC
Q psy8733 342 EDLLEYAL 349 (621)
Q Consensus 342 ~~ll~~~~ 349 (621)
+++++++.
T Consensus 307 ~~li~~l~ 314 (464)
T PRK04311 307 KELIARLK 314 (464)
T ss_pred HHHHHHHh
Confidence 99988764
No 76
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=99.34 E-value=1.5e-12 Score=139.72 Aligned_cols=102 Identities=58% Similarity=0.978 Sum_probs=94.8
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
.|++++|+||++||.|++++++|++++++..+.+|.+++|....+++++++|||+..||.++..|+|+++.||+++++++
T Consensus 176 ~d~~~~ssqK~lgP~Glg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r 255 (349)
T TIGR01364 176 FGLIYAGAQKNIGPAGLTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKR 255 (349)
T ss_pred ccEEEEecccccCCCceEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 67999999999999999999999999999888889999887777888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCccccc
Q psy8733 529 SLQKSVLLYQEIDNSDKFYECP 550 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~~ 550 (621)
.++.++.+++.+++.++||...
T Consensus 256 ~~~l~~~l~~~l~~~~gl~~~~ 277 (349)
T TIGR01364 256 NQAKAQLLYDTIDNSNGFYRNP 277 (349)
T ss_pred HHHHHHHHHHHHHhCCCeeccC
Confidence 9999999999999998765554
No 77
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=99.33 E-value=1.6e-11 Score=114.79 Aligned_cols=72 Identities=28% Similarity=0.303 Sum_probs=61.8
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcc---ccccc--ceEEeccccccCCCccEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKF---DVSKF--GVIIAGAQKNIGPAGITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pI---Dv~~~--gvl~asaqK~lGP~Glg~li 339 (621)
..++++++.+++.++.+|...|. +++++++++++|++++.+..+. +.... |+++.|.||++|++|.|+++
T Consensus 89 ~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~~G~l~ 168 (170)
T cd01494 89 AKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVI 168 (170)
T ss_pred ccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEEEcccccCCCceEEEE
Confidence 45689999999999999999874 4468899999999999999886 45544 49999999999889999999
Q ss_pred Ec
Q psy8733 340 VR 341 (621)
Q Consensus 340 vr 341 (621)
+|
T Consensus 169 ~~ 170 (170)
T cd01494 169 VK 170 (170)
T ss_pred eC
Confidence 86
No 78
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.33 E-value=6.2e-10 Score=120.10 Aligned_cols=131 Identities=16% Similarity=0.175 Sum_probs=79.5
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccc---cCCCcc-cccc-cceEEeccccccCCCc--
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSN---FLSRKF-DVSK-FGVIIAGAQKNIGPAG-- 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs---~G~~pI-Dv~~-~gvl~asaqK~lGP~G-- 334 (621)
+++++++|++++..|.||...+. +++++|+++|+|.++. .+..++ .++. -.+.+.|..|++|++|
T Consensus 154 ~~~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~R 233 (380)
T PRK06225 154 MDENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIFGMAGLR 233 (380)
T ss_pred cCCCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhcCCccce
Confidence 45678999999888899998762 3457899999999863 222221 1221 1255566679999999
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+|+++.++++.+++.+. . ...+++ +....++...+++...+. ++.+.+..+++.+.+++.|++++
T Consensus 234 iG~i~~~~~l~~~~~~~-------~-----~~~~~~-~~~~~~~a~~~l~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~ 298 (380)
T PRK06225 234 IGAVVATPDLIEVVKSI-------V-----INDLGT-NVIAQEAAIAGLKVKDEW--IDRIRRTTFKNQKLIKEAVDEIE 298 (380)
T ss_pred eEEEecCHHHHHHHHHH-------H-----hcccCC-CHHHHHHHHHHHhcchHH--HHHHHHHHHHHHHHHHHHHHhCc
Confidence 69999999988765321 0 011222 333333333444322111 34445555566677778887765
Q ss_pred C
Q psy8733 415 K 415 (621)
Q Consensus 415 g 415 (621)
|
T Consensus 299 ~ 299 (380)
T PRK06225 299 G 299 (380)
T ss_pred C
Confidence 4
No 79
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=99.32 E-value=2.6e-12 Score=137.97 Aligned_cols=103 Identities=59% Similarity=0.985 Sum_probs=94.8
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
.|+.|+|+||.+||.|++++++|++++++..+..|.+++|..+.++.++++|||+.+||.+...|+|+.+.||++.++++
T Consensus 184 ~~~~~ss~~K~lGP~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~ 263 (355)
T cd00611 184 FGVIYAGAQKNLGPAGVTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKR 263 (355)
T ss_pred hCEEEeecccccCCCceEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56788999999999999999999999999888889998888777888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCcccccC
Q psy8733 529 SLQKSVLLYQEIDNSDKFYECPV 551 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~~v 551 (621)
.++.++.+|+.+++.++||..+.
T Consensus 264 ~~~l~~~l~~~l~~~~gl~~~~~ 286 (355)
T cd00611 264 NRQKAQLLYDTIDNSNGFYRGPV 286 (355)
T ss_pred HHHHHHHHHHHHHhCccccccCC
Confidence 99999999999999988765543
No 80
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.31 E-value=3.1e-11 Score=143.59 Aligned_cols=136 Identities=14% Similarity=0.126 Sum_probs=101.0
Q ss_pred CCceEEEEecccccccccccc--c---cccCCCcEEEecccccCC-Ccccccccc--eEEeccccccC-CC-----ccEE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--I---PDSQGIPLVSDMSSNFLS-RKFDVSKFG--VIIAGAQKNIG-PA-----GITV 337 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--i---~~~~g~llvvDavSs~G~-~pIDv~~~g--vl~asaqK~lG-P~-----Glg~ 337 (621)
+++++|.++|.+|.+|+..|+ | ++++|+++++|++|..+. ..++..++| +++++.||+|+ |. |+|+
T Consensus 665 ~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~ 744 (993)
T PLN02414 665 DNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGP 744 (993)
T ss_pred CCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCccccCCCEEEecCCccCCcCcccCCCCeee
Confidence 478999999999999999986 3 468899999999999998 666777776 99999999773 55 5999
Q ss_pred EEEchhHHhhhCCCCCcee-----eccccccCCCccCCch---HHHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHHH
Q psy8733 338 VIVREDLLEYALPITPTVF-----HFKINADNNSVYNTPP---TFVVHVIQRVFAWIKRQG--GLAKMEQNSLQKSVLLY 407 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~l-----d~~~~~~~~s~~~TP~---v~~I~aL~~aL~~i~~~g--Gl~~i~~r~~~la~~L~ 407 (621)
+++++.+...+ |... .+.. .+..+..+|-+ +....++-.|+.|+...| |+.+..++...++.++.
T Consensus 745 l~~~~~L~p~l----Pg~~v~~~~~~~~-r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~ 819 (993)
T PLN02414 745 IGVKKHLAPFL----PSHPVVPTGGIPR-PEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMA 819 (993)
T ss_pred EEEchhhcccC----CCCccccCCCccc-ccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHH
Confidence 99999775443 3211 0000 01112234533 344477788888888763 46666999999999999
Q ss_pred HHHHc
Q psy8733 408 QEIDN 412 (621)
Q Consensus 408 e~L~~ 412 (621)
+.|.+
T Consensus 820 ~rL~~ 824 (993)
T PLN02414 820 KRLEG 824 (993)
T ss_pred HHHHh
Confidence 99976
No 81
>PLN02271 serine hydroxymethyltransferase
Probab=99.30 E-value=5.1e-11 Score=133.20 Aligned_cols=283 Identities=14% Similarity=0.112 Sum_probs=168.3
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHH-HHHHHHHHHHHHHhCCCC-CC--EEEEEcCCcc
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYT-KINNDTQAALRELLNVPN-NY--KILFLQGGGT 125 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~-~i~~~ar~~La~Ll~~p~-~y--eI~f~~gggT 125 (621)
.+...+.|.---+++.|++++...+.+-...|..- ...+-+-++. ++-.-+.++.+++|+++. .+ +|- +-||+
T Consensus 148 ~~~l~LIASEN~~S~av~~algS~ltnkYaEG~pG-~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQ--p~SGs 224 (586)
T PLN02271 148 FKGIELIASENFVCRAVMEALGSHLTNKYSEGMPG-ARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQ--PYSCT 224 (586)
T ss_pred hcCeeeccccccCCHHHHHHhcCcccccCCCCCCC-CcCCCCChhHHHHHHHHHHHHHHHhCCccccccccee--eccHH
Confidence 46789999999999999999999988865555431 1222344444 455667889999999864 11 343 33677
Q ss_pred hhhhHHHHHHhhh-ccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHH----HHHHHhCCceeeec
Q psy8733 126 GMFAAVAMNLISS-SMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAA----AEAEKYGKVNLVIP 200 (621)
Q Consensus 126 ~~~~a~alNlla~-~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~----~~a~~~G~~~~~~~ 200 (621)
-+ |+.+. ++ +++||+|+.+.. +.| |+.+|... ..+...|.-..+.+
T Consensus 225 ~A------N~aV~~AL-l~PGD~IL~ldl--------------~~G--------GHlshg~~~~~g~~vs~sG~~~~~vp 275 (586)
T PLN02271 225 SA------NFAVYTGL-LLPGDRIMGLDS--------------PSG--------GHMSHGYYTPGGKKVSGASIFFESLP 275 (586)
T ss_pred HH------HHHHHHHh-cCCCCEEEEecC--------------CCC--------CchhcccccccccccccccceEEEEE
Confidence 63 33332 33 677887777642 222 22222110 01112222111111
Q ss_pred ccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEe
Q psy8733 201 KVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYC 280 (621)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~t 280 (621)
|. ++.+.+ -+|.++ .++.....++|+|.+.
T Consensus 276 ------------------------Y~----~d~~~g-~IDyd~---------------------lek~a~~~rPKLII~g 305 (586)
T PLN02271 276 ------------------------YK----VNPQTG-YIDYDK---------------------LEEKALDFRPKILICG 305 (586)
T ss_pred ------------------------cc----cccccC-ccCHHH---------------------HHHHhhhcCCeEEEEC
Confidence 00 000000 011111 1222356789999987
Q ss_pred cccccccccccc-----ccccCCCcEEEecccccCCCccc-----ccccceEEecccccc-CCCccEEEEEchhHHhhhC
Q psy8733 281 DNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFD-----VSKFGVIIAGAQKNI-GPAGITVVIVREDLLEYAL 349 (621)
Q Consensus 281 hnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pID-----v~~~gvl~asaqK~l-GP~Glg~livr~~ll~~~~ 349 (621)
+...+ ...|+ ++++.|+++++|++|.+|..+.+ +...|++++++|||| ||.| |+++++++......
T Consensus 306 ~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGPrG-G~I~~r~~~~~~~~ 382 (586)
T PLN02271 306 GSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRG-GIIFYRKGPKLRKQ 382 (586)
T ss_pred chhcc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCCCc-eEEEeccccccccc
Confidence 76665 34443 56688999999999999998665 445679999999999 8999 88888877543222
Q ss_pred CCCCce------eeccccccC---CCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 350 PITPTV------FHFKINADN---NSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 350 ~~~P~~------ld~~~~~~~---~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
+...++ -++....+. +..-+.|-...|++++.+|+++... ......++..+.++.|-+.|.+.+ +.+.
T Consensus 383 g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~-efk~Ya~QVv~NAkaLA~~L~~~G-~~vv 459 (586)
T PLN02271 383 GMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATP-EYKAYMQQVKKNAQALASALLRRK-CRLV 459 (586)
T ss_pred CCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHCC-CeEe
Confidence 211110 011111111 2333445555599999999998765 457788888888888888888764 5543
No 82
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.29 E-value=1.6e-09 Score=116.51 Aligned_cols=128 Identities=13% Similarity=0.160 Sum_probs=91.7
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCc---------cccc-ccceEEeccccccCCCccE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRK---------FDVS-KFGVIIAGAQKNIGPAGIT 336 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~p---------IDv~-~~gvl~asaqK~lGP~Glg 336 (621)
+++++|.+.+..+.+|...|+ +++++|+++|+|.+++.|..+ ++++ +.++++.|.+|++|.+| |
T Consensus 162 ~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-G 240 (385)
T TIGR01825 162 YGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVVG-G 240 (385)
T ss_pred CCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcCC-C
Confidence 568899999888999998885 456899999999999876432 3443 22388899999999777 8
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccC-CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYN-TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~-TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+++.++++++.+..... ....+ +++....+++.++++.+.+. .+..++..++.+++++.|.+++
T Consensus 241 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~a~~~al~~~~~~---~~~~~~~~~~~~~l~~~L~~~g 305 (385)
T TIGR01825 241 YAAGHKELIEYLKNRAR-----------PFLFSTAQPPAVVAALAAAVDELQRS---PELMERLWDNTRFFKAGLGKLG 305 (385)
T ss_pred EEecCHHHHHHHHHhCc-----------cccccCCCCHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888876532111 01122 23445678888889887654 2456666778889999998763
No 83
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.29 E-value=8.4e-10 Score=120.48 Aligned_cols=129 Identities=12% Similarity=0.148 Sum_probs=91.8
Q ss_pred CCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC-c--------ccc-cccceEEeccccccCCCcc
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR-K--------FDV-SKFGVIIAGAQKNIGPAGI 335 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~-p--------IDv-~~~gvl~asaqK~lGP~Gl 335 (621)
++++++|.+++..+.+|...|+ +++++++++++|.++++|.. + .++ ++.++++.+..|++|.+|
T Consensus 176 ~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G- 254 (410)
T PRK13392 176 PDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLG- 254 (410)
T ss_pred CCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhccc-
Confidence 3578999999999999999985 45678999999999996542 1 111 234678889999999777
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccC-CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYN-TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~-TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
|+++.++++++.+....+. ..+. ++|....+++.++|+.+... + ...++..++.+++++.|++++
T Consensus 255 G~~~~~~~~~~~l~~~~~~-----------~~~s~~~~~~~~~a~~aaL~~~~~~-~--~~~~~~~~~~~~l~~~L~~~g 320 (410)
T PRK13392 255 GYIAASADLIDFVRSFAPG-----------FIFTTALPPAVAAGATAAIRHLKTS-Q--TERDAHQDRVAALKAKLNANG 320 (410)
T ss_pred chhhcCHHHHHHHHHhCcc-----------hhccCcCCHHHHHHHHHHHHHHhcC-H--HHHHHHHHHHHHHHHHHHHcC
Confidence 7888888887755332111 1122 23335678888899987654 2 344667778889999998864
No 84
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.29 E-value=1.7e-09 Score=115.82 Aligned_cols=128 Identities=12% Similarity=0.121 Sum_probs=89.2
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCc---------cccccc-c-eEEeccccccCCCccE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRK---------FDVSKF-G-VIIAGAQKNIGPAGIT 336 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~p---------IDv~~~-g-vl~asaqK~lGP~Glg 336 (621)
++.++.+.+.-+.+|...++ +++++|+++|+|.+++.|..+ .+++.. + +++.|.+|++|++| |
T Consensus 168 ~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-g 246 (385)
T PRK05958 168 GRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSG-A 246 (385)
T ss_pred CCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccCC-c
Confidence 35667777777888988875 456899999999999876432 123322 3 77889999999888 8
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+++.++++.+.+......+ .....++...+.++.++++++.+ . +.+.++..++.+++++.|.+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~aa~~aal~~~~~--~-~~~~~~~~~~~~~l~~~L~~~~ 311 (385)
T PRK05958 247 AVLGSETLIDYLINRARPF----------IFTTALPPAQAAAARAALRILRR--E-PERRERLAALIARLRAGLRALG 311 (385)
T ss_pred EEEcCHHHHHHHHHhCccc----------eecCCCCHHHHHHHHHHHHHHhc--C-HHHHHHHHHHHHHHHHHHHHcC
Confidence 8888888766542211000 01122444566777788988865 2 6778899999999999998764
No 85
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.29 E-value=2.2e-10 Score=119.76 Aligned_cols=131 Identities=15% Similarity=0.221 Sum_probs=99.0
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC----c---ccccccc--eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR----K---FDVSKFG--VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~----p---IDv~~~g--vl~asaqK~lGP 332 (621)
.++++++|.+++..+.+|+..|. +++++|+++++|.+++.+.. + ...+.++ +++.|.+|++|.
T Consensus 129 ~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~ 208 (350)
T cd00609 129 KTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGL 208 (350)
T ss_pred cCccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCC
Confidence 56789999999999999999884 34688999999999886432 1 2344444 778899999973
Q ss_pred --CccEEEEEch-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 333 --AGITVVIVRE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 333 --~Glg~livr~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.++|+++.++ ++.+.+... ......+++....+++..+++... . +++++.++..++++++.+.
T Consensus 209 ~g~~~G~i~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~~~~l~~~ 274 (350)
T cd00609 209 PGLRIGYLIAPPEELLERLKKL------------LPYTTSGPSTLSQAAAAAALDDGE-E-HLEELRERYRRRRDALLEA 274 (350)
T ss_pred cccceEEEecCHHHHHHHHHHH------------HHhcccCCChHHHHHHHHHHhCcH-H-HHHHHHHHHHHHHHHHHHH
Confidence 4589999999 666554210 012245777888888888877665 3 6889999999999999999
Q ss_pred HHccC
Q psy8733 410 IDNSD 414 (621)
Q Consensus 410 L~~~~ 414 (621)
|++++
T Consensus 275 L~~~~ 279 (350)
T cd00609 275 LKELG 279 (350)
T ss_pred HHhcC
Confidence 99876
No 86
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=99.28 E-value=5.8e-10 Score=125.76 Aligned_cols=145 Identities=14% Similarity=0.146 Sum_probs=106.7
Q ss_pred CceEEEEe--cccccccccccc-----ccccCCCcEEEecccccCCCccc-----cc---ccceEEecccccc-CCCccE
Q psy8733 273 EASYLYYC--DNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFD-----VS---KFGVIIAGAQKNI-GPAGIT 336 (621)
Q Consensus 273 ~t~~V~~t--hnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pID-----v~---~~gvl~asaqK~l-GP~Glg 336 (621)
+++.++++ ++.|.+|...|+ +++++|+.++|||+++.+....+ ++ ..|.+.+++|||+ +|.|.|
T Consensus 263 g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G 342 (522)
T TIGR03799 263 NIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAG 342 (522)
T ss_pred CCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccE
Confidence 45555555 678899999997 45689999999999998887766 44 3479999999988 599999
Q ss_pred EEEEchh-HHhhhCCCCCceeeccc--cccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 337 VVIVRED-LLEYALPITPTVFHFKI--NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 337 ~livr~~-ll~~~~~~~P~~ld~~~--~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
++++|++ +++.+.+ .+.|+.... .....+..+|.+-.. ..+..+|+++... |++.+.++..++++++++.|++.
T Consensus 343 ~llvr~~~~~~~~~~-~~~Yl~~~~~~d~~~~~legsR~~~a-l~lw~aL~~lG~~-G~~~ii~~~~~la~~l~~~L~~~ 419 (522)
T TIGR03799 343 MVLFKDPALMSAIEH-HAEYILRKGSKDLGSHTLEGSRPGMA-MLVYAGLHIIGRK-GYELLIDQSIEKAKYFADLIQQQ 419 (522)
T ss_pred EEEEeCHHHHHHhcc-CcchhcCCCCCccccceeecCcchHH-HHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999864 4444433 233431111 011112234444333 4689999999888 89999999999999999999999
Q ss_pred CCcccCc
Q psy8733 414 DKFYECP 420 (621)
Q Consensus 414 ~g~~~~~ 420 (621)
++|.+..
T Consensus 420 ~~~el~~ 426 (522)
T TIGR03799 420 PDFELVT 426 (522)
T ss_pred CCeEEec
Confidence 8887654
No 87
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=99.27 E-value=4.9e-12 Score=136.35 Aligned_cols=100 Identities=59% Similarity=1.015 Sum_probs=92.1
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
.|++++|+||++||.|++++++|++++++..+.+|.+++|....+++++++|||+..||.++..|+|+.+.||++.+.++
T Consensus 187 ~d~~~~ssqK~lgP~Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r 266 (360)
T PRK05355 187 FGLIYAGAQKNIGPAGLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKR 266 (360)
T ss_pred ccEEEEeccccccCCceEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 57999999999999999999999999999776568899998878889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCcccc
Q psy8733 529 SLQKSVLLYQEIDNSDKFYEC 549 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~ 549 (621)
.++.++.+++.+++.+ +|.+
T Consensus 267 ~~~l~~~l~~~l~~~~-~~~~ 286 (360)
T PRK05355 267 NQEKAALLYDAIDSSD-FYRN 286 (360)
T ss_pred HHHHHHHHHHHHHhCC-Cccc
Confidence 9999999999999876 5544
No 88
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.26 E-value=1e-09 Score=117.46 Aligned_cols=127 Identities=12% Similarity=0.157 Sum_probs=83.6
Q ss_pred CCCCceEEEEecccccccccccc-----ccc--cCCCcEEEecccccCC------Ccccccc-cc--eEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPD--SQGIPLVSDMSSNFLS------RKFDVSK-FG--VIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~--~~g~llvvDavSs~G~------~pIDv~~-~g--vl~asaqK~lGP~ 333 (621)
+++++++|++++..+.||...+. +.+ .+++++|+|.+..... .++++-+ .+ +++.|--|.+|.+
T Consensus 151 ~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 230 (367)
T PRK02731 151 VTPRTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLA 230 (367)
T ss_pred hCCCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCc
Confidence 45678999999999999999985 232 2489999999865322 1122211 12 6666777999988
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|+++.++++.+++..... .++. +.....+ +++++.+..-++.+.++.+++.+.+++.|+
T Consensus 231 G~RiG~l~~~~~~~~~l~~~~~-------------~~~~-~~~~~~~---a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 293 (367)
T PRK02731 231 GLRVGYGIAPPEIIDALNRVRQ-------------PFNV-NSLALAA---AVAALDDDAFVEKSRALNAEGMAWLTEFLA 293 (367)
T ss_pred ccceeeeeCCHHHHHHHHHccC-------------CCCC-CHHHHHH---HHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 4999999998876643211 1111 2233333 344444332367778888888888999888
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
+.
T Consensus 294 ~~ 295 (367)
T PRK02731 294 EL 295 (367)
T ss_pred HC
Confidence 76
No 89
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.22 E-value=1.5e-10 Score=127.97 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEE
Q psy8733 96 KINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADY 175 (621)
Q Consensus 96 ~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~ 175 (621)
...++.++.++++.|++. .+|+ +|||. |+|++..++ +++||+|+++.. .|.+ ..+++
T Consensus 64 p~~~~le~~lA~l~g~~~---av~~-sSGt~-----Al~~al~~l-l~~Gd~Vi~~~~----~y~~-t~~~~-------- 120 (433)
T PRK08134 64 PTVAVLEERVAALEGGVG---AIAT-ASGQA-----ALHLAIATL-MGAGSHIVASSA----LYGG-SHNLL-------- 120 (433)
T ss_pred hHHHHHHHHHHHHhCCCc---EEEe-CCHHH-----HHHHHHHHH-hCCCCEEEEeCC----ccHH-HHHHH--------
Confidence 468889999999999864 4555 67888 677766555 778888877653 2321 11221
Q ss_pred EEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhccccccccc
Q psy8733 176 VVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPK 255 (621)
Q Consensus 176 v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~ 255 (621)
...++++|......+. + +++++
T Consensus 121 ----------~~~l~~~Gi~v~~vd~------------------------------~-------d~~~l----------- 142 (433)
T PRK08134 121 ----------HYTLRRFGIETTFVKP------------------------------G-------DIDGW----------- 142 (433)
T ss_pred ----------HHHHhhCCeEEEEECC------------------------------C-------CHHHH-----------
Confidence 1123556653322110 0 11111
Q ss_pred CCCccCCCCccccCCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccccc--ceEEecccc
Q psy8733 256 VSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKF--GVIIAGAQK 328 (621)
Q Consensus 256 ~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~--gvl~asaqK 328 (621)
+-.++++|++|++.|..+.+|...|+ +++++|+++|+|++|+.+....++ ++ |+++.|+||
T Consensus 143 -----------~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl-~~GaD~vv~S~tK 210 (433)
T PRK08134 143 -----------RAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPF-EHGADLVYHSATK 210 (433)
T ss_pred -----------HHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCch-hcCCCEEEecccc
Confidence 01367889999999999999999996 456899999999999998877666 45 499999999
Q ss_pred ccCCCc--cEEEEEc
Q psy8733 329 NIGPAG--ITVVIVR 341 (621)
Q Consensus 329 ~lGP~G--lg~livr 341 (621)
++||+| +|.+++.
T Consensus 211 ~l~g~g~~~gG~v~~ 225 (433)
T PRK08134 211 FLGGHGTAIGGVLVD 225 (433)
T ss_pred ccCCCCCceEEEEEe
Confidence 999888 6777664
No 90
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.22 E-value=5.2e-09 Score=112.46 Aligned_cols=133 Identities=12% Similarity=0.078 Sum_probs=87.1
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCc--------cccccc-c--eEEecccccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRK--------FDVSKF-G--VIIAGAQKNI 330 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~p--------IDv~~~-g--vl~asaqK~l 330 (621)
+++++++|.+++..|.||...+. +++++++++|+|.+.+..... +++.+. + +++.|-.|.+
T Consensus 155 ~~~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 234 (382)
T PRK06108 155 ITPRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNW 234 (382)
T ss_pred cCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhc
Confidence 34678999999999999998863 345789999999886543211 333322 2 7788999999
Q ss_pred CCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q psy8733 331 GPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 331 GP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e 408 (621)
|.+| +|+++.++++++++.... . ....+ ++.....+...+|+.-.+ -++++.++.+++.+.+++
T Consensus 235 g~~G~RiG~~~~~~~~~~~~~~~~----~-------~~~~~-~~~~~q~a~~~~l~~~~~--~~~~~~~~~~~~~~~l~~ 300 (382)
T PRK06108 235 AMTGWRLGWLVAPPALGQVLEKLI----E-------YNTSC-VAQFVQRAAVAALDEGED--FVAELVARLRRSRDHLVD 300 (382)
T ss_pred cCcccceeeeeCCHHHHHHHHHHH----H-------hcccC-CChHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHHHH
Confidence 9778 799999999887653210 0 01122 233333333334332111 256777888888888999
Q ss_pred HHHccCCc
Q psy8733 409 EIDNSDKF 416 (621)
Q Consensus 409 ~L~~~~g~ 416 (621)
.|++++|+
T Consensus 301 ~L~~~~~~ 308 (382)
T PRK06108 301 ALRALPGV 308 (382)
T ss_pred HHHhCCCC
Confidence 98877544
No 91
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.20 E-value=7.1e-10 Score=116.71 Aligned_cols=127 Identities=13% Similarity=0.080 Sum_probs=77.6
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEeccc------ccCCCcccc--cccceEEeccccccCCCcc
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSS------NFLSRKFDV--SKFGVIIAGAQKNIGPAGI 335 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavS------s~G~~pIDv--~~~gvl~asaqK~lGP~Gl 335 (621)
+++++|++|+..+. |...+. +++++|+++++|.+. +.|. +++. ...++++.|.||++|.+|-
T Consensus 126 ~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~-~~~~~~~~~d~~~~s~sK~~~~~~g 203 (338)
T cd06502 126 PPPSLVSLENTTEG-GTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGV-ALKTYKSGVDSVSFCLSKGGGAPVG 203 (338)
T ss_pred CcceEEEEEeecCC-ccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC-CHHHHHhcCCEEEEeccccCCCccc
Confidence 36889999987775 544342 235689999999853 2332 3221 2345888899999996665
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++++.++++++++.+..+.+ .++.....+ ...+++..+.. ++...+.++..++++++++.|++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~-~~~a~~~~L~~-~~~~~~~~~~~~~~~~l~~~L~~~~ 268 (338)
T cd06502 204 AVVVGNRDFIARARRRRKQA------------GGGMRQSGF-LAAAGLAALEN-DLWLRRLRHDHEMARRLAEALEELG 268 (338)
T ss_pred eEEECCHHHHHHHHHHHHHh------------CCChhhHHH-HHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56677888887764311100 011111111 11223333333 2566677888888999999999875
No 92
>PLN02483 serine palmitoyltransferase
Probab=99.20 E-value=1.2e-08 Score=114.64 Aligned_cols=128 Identities=13% Similarity=0.161 Sum_probs=88.5
Q ss_pred eEE-EEecccccccccccc-----ccccCCCcEEEecccccCCC-----------cccccccceEEeccccccCCCccEE
Q psy8733 275 SYL-YYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR-----------KFDVSKFGVIIAGAQKNIGPAGITV 337 (621)
Q Consensus 275 ~~V-~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~-----------pIDv~~~gvl~asaqK~lGP~Glg~ 337 (621)
+.+ .+.++-+.+|...++ +++++++++++|-++++|.. .++.++.++++.|.+|.+|+.| |+
T Consensus 241 k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~G-G~ 319 (489)
T PLN02483 241 KIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCG-GY 319 (489)
T ss_pred eEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccCc-eE
Confidence 544 444455777888875 45689999999999997642 2222344689999999999888 99
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCcc-CCchHHHHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHHHHcc
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVY-NTPPTFVVHVIQRVFAWIKRQGG---LAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~-~TP~v~~I~aL~~aL~~i~~~gG---l~~i~~r~~~la~~L~e~L~~~ 413 (621)
++.++++++.+....+. ..+ .+++...+.++.++|+++....| ..++.++.+++.+++++.|.++
T Consensus 320 i~~~~~li~~l~~~~~~-----------~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~ 388 (489)
T PLN02483 320 IAGSKELIQYLKRTCPA-----------HLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM 388 (489)
T ss_pred EEcCHHHHHHHHHhCcc-----------ccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC
Confidence 99999998876432211 122 23344455567788998874322 2445677888899999999987
Q ss_pred C
Q psy8733 414 D 414 (621)
Q Consensus 414 ~ 414 (621)
+
T Consensus 389 G 389 (489)
T PLN02483 389 G 389 (489)
T ss_pred C
Confidence 4
No 93
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.19 E-value=7.6e-09 Score=111.38 Aligned_cols=128 Identities=10% Similarity=0.086 Sum_probs=91.0
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcc---------ccc-ccceEEecccccc-CCCccE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKF---------DVS-KFGVIIAGAQKNI-GPAGIT 336 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pI---------Dv~-~~gvl~asaqK~l-GP~Glg 336 (621)
++++|...++.+.+|...+. +++++++++|+|.++++|.... ++. +.+++++|.+|++ |+. .|
T Consensus 174 ~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r-~G 252 (397)
T PRK06939 174 RHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGAS-GG 252 (397)
T ss_pred CCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccC-ce
Confidence 67888888778888987774 4568999999999997654321 222 2358889999999 565 59
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+++.++++++.+...... ....+|++...++++.++++++.+ .+.+.++.+++.+++++.|++++
T Consensus 253 ~v~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~~l~~~L~~~~ 317 (397)
T PRK06939 253 YTAGRKEVIDWLRQRSRP----------YLFSNSLAPAIVAASIKVLELLEE---SDELRDRLWENARYFREGMTAAG 317 (397)
T ss_pred EEEeCHHHHHHHHHhCcc----------ccccCCCCHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999988776431110 011234455556777788888854 25778888899999999998763
No 94
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=99.18 E-value=1.2e-09 Score=118.50 Aligned_cols=245 Identities=14% Similarity=0.148 Sum_probs=147.6
Q ss_pred CCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhccC
Q psy8733 62 LPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMN 141 (621)
Q Consensus 62 ~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~~ 141 (621)
++++-++++.+.+.. |. .. .+ ....+.++.+++++|++. ++++ +|||. |++++...++
T Consensus 12 ~~~~e~~~~~~~l~~----~~----~~-~g----~~~~~le~~la~~~g~~~---~v~~-~sgt~-----al~lal~al~ 69 (379)
T PRK11658 12 MGDEELAAVKEVLRS----GW----IT-TG----PKNQALEQAFCQLTGNQH---AIAV-SSATA-----GMHITLMALG 69 (379)
T ss_pred CCHHHHHHHHHHHHc----CC----cc-CC----HhHHHHHHHHHHHhCCCe---EEEE-CCHHH-----HHHHHHHHcC
Confidence 456667888876632 10 01 12 247788999999999863 5655 67888 6666666667
Q ss_pred CCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCcc
Q psy8733 142 VPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEAS 221 (621)
Q Consensus 142 ~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 221 (621)
+++||+|++... .|.+. ...+...|...+..+.. +
T Consensus 70 ~~~Gd~Viv~~~----~~~~~-----------------------~~~~~~~G~~~v~vd~~----------~-------- 104 (379)
T PRK11658 70 IGPGDEVITPSL----TWVST-----------------------LNMIVLLGATPVMVDVD----------R-------- 104 (379)
T ss_pred CCCCCEEEECCC----cHHHH-----------------------HHHHHHcCCEEEEEecC----------C--------
Confidence 788888887653 22211 11234456543333210 0
Q ss_pred ccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc-----cccc
Q psy8733 222 YLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY-----IPDS 296 (621)
Q Consensus 222 ~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~-----i~~~ 296 (621)
..| .++++.+ + -.+++++++|..+|. +|...|+ ++++
T Consensus 105 -----------~~~--~~d~~~l---------------------~-~~i~~~tkav~~~~~---~G~~~d~~~i~~~a~~ 146 (379)
T PRK11658 105 -----------DTL--MVTPEAI---------------------E-AAITPRTKAIIPVHY---AGAPADLDAIRAIGER 146 (379)
T ss_pred -----------CcC--CcCHHHH---------------------H-HhcccCCeEEEEeCC---CCCcCCHHHHHHHHHH
Confidence 000 0111221 1 135678998887764 7998885 4568
Q ss_pred CCCcEEEecccccCCCcc--cccccc--eEEeccccccC-CCccEEEEEchhHHhhhCCCC--Cceee---ccccccC--
Q psy8733 297 QGIPLVSDMSSNFLSRKF--DVSKFG--VIIAGAQKNIG-PAGITVVIVREDLLEYALPIT--PTVFH---FKINADN-- 364 (621)
Q Consensus 297 ~g~llvvDavSs~G~~pI--Dv~~~g--vl~asaqK~lG-P~Glg~livr~~ll~~~~~~~--P~~ld---~~~~~~~-- 364 (621)
+|+++|+|++|++|+... ++..+| ++.++++|++. +.|-.++.-++++.+++++.. ....+ .......
T Consensus 147 ~gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 226 (379)
T PRK11658 147 YGIPVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIKNITCAEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQ 226 (379)
T ss_pred cCCeEEEECCCccCCeECCeecCCCCCEEEeCCCCCcCcccCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCc
Confidence 899999999999998765 355555 77888999993 443333333467777664311 11110 0000000
Q ss_pred --CCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 365 --NSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 365 --~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
....++. +-+..+.+|+.++... +++.+.++.+++++++++.|.+++
T Consensus 227 ~~~~~~G~n--~~~~~l~AAl~~~ql~-~l~~~~~~r~~~a~~~~~~L~~~~ 275 (379)
T PRK11658 227 AEVLTPGYK--YNLADINAAIALVQLA-KLEALNARRREIAARYLQALADLP 275 (379)
T ss_pred ceeeccccc--cCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 0011221 1235677888888777 899999999999999999999886
No 95
>PRK07908 hypothetical protein; Provisional
Probab=99.18 E-value=9.6e-09 Score=109.60 Aligned_cols=125 Identities=11% Similarity=0.033 Sum_probs=80.0
Q ss_pred CCCceEEEEecccccccccccc-----ccccCCCcEEEeccccc--CCCccccc--ccc--eEEeccccccCCCcc--EE
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNF--LSRKFDVS--KFG--VIIAGAQKNIGPAGI--TV 337 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~--G~~pIDv~--~~g--vl~asaqK~lGP~Gl--g~ 337 (621)
.++++++++|+-.|.||...+. ++ .++.++|+|.+.+- ...+.++. +.+ +++.|-.|.+|++|+ |+
T Consensus 137 ~~~~~~i~l~np~NPTG~~~~~~~l~~l~-~~~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~ 215 (349)
T PRK07908 137 PDDADLVVIGNPTNPTSVLHPAEQLLALR-RPGRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKTWSLAGLRVGY 215 (349)
T ss_pred ccCCCEEEEcCCCCCCCCCcCHHHHHHHH-hcCCEEEEECcchhhccCCccccccccCCCEEEEeecccccCCccceeee
Confidence 4578899999999999999984 33 35788999988752 23333442 233 555688999998885 99
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQ--GGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~--gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
++.++++++++.+... ..+.+.....++... +... .-++++.++.+++.+++.+.|.++
T Consensus 216 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 276 (349)
T PRK07908 216 ALGAPDVLARLTRGRA--------------HWPVGTLQLEAIAAC---CAPRAVAEAAADAARLAADRAEMVAGLRAV 276 (349)
T ss_pred eecCHHHHHHHHhcCC--------------CCCccHHHHHHHHHH---hcccchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999887643211 011222222322222 2211 014556777778888888888776
No 96
>PRK09105 putative aminotransferase; Provisional
Probab=99.18 E-value=1.1e-08 Score=110.56 Aligned_cols=243 Identities=13% Similarity=0.096 Sum_probs=145.0
Q ss_pred CceeccCCC-CCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 51 PVINFGAGP-AKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 51 ~~~lf~aGP-s~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
.+++....| -+.|+.|++++.+.+... .+... . . ..+.|+.+++.+|++.+ +|+++ +|+++
T Consensus 45 ~i~l~~~~~~~~~~~~~~~a~~~~~~~~----------~~Y~~-~-~-~~~Lr~aia~~~~v~~e-~I~it-~Gs~~--- 106 (370)
T PRK09105 45 AVFLNANECPLGPSPAARDAAARSAALS----------GRYDL-E-L-EDDLRTLFAAQEGLPAD-HVMAY-AGSSE--- 106 (370)
T ss_pred cEEecCCCCCCCCCHHHHHHHHHHHHHh----------cCCCC-c-h-HHHHHHHHHHHhCcChh-hEEEc-CChHH---
Confidence 345554444 568999999998876331 11111 1 2 66788899999999665 78876 56888
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
+++++ +..+..+||++.+..++++.. ...++..|...+..+.
T Consensus 107 --ai~~~--------------------------~~~l~~~gd~Vli~~P~y~~~--~~~~~~~g~~~~~v~~-------- 148 (370)
T PRK09105 107 --PLNYA--------------------------VLAFTSPTAGLVTADPTYEAG--WRAADAQGAPVAKVPL-------- 148 (370)
T ss_pred --HHHHH--------------------------HHHHcCCCCEEEEeCCChHHH--HHHHHHcCCeEEEecC--------
Confidence 44443 333445566655555554433 3356677754322211
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
+.+|. .+.+++ . +..+++++|++|+-.|.||..
T Consensus 149 ----------------------~~~~~--~d~~~l---------------------~--~~~~~~~~v~l~nP~NPTG~~ 181 (370)
T PRK09105 149 ----------------------RADGA--HDVKAM---------------------L--AADPNAGLIYICNPNNPTGTV 181 (370)
T ss_pred ----------------------CCCCC--CCHHHH---------------------H--hcCCCCCEEEEeCCCCCCCcC
Confidence 00111 111111 1 123568999999999999999
Q ss_pred ccc-----ccc--cCCCcEEEecccc-cCCCc--cccccc--c-eEEeccccccCCCc--cEEEEEchhHHhhhCCCCCc
Q psy8733 290 FNY-----IPD--SQGIPLVSDMSSN-FLSRK--FDVSKF--G-VIIAGAQKNIGPAG--ITVVIVREDLLEYALPITPT 354 (621)
Q Consensus 290 ~p~-----i~~--~~g~llvvDavSs-~G~~p--IDv~~~--g-vl~asaqK~lGP~G--lg~livr~~ll~~~~~~~P~ 354 (621)
.+. +.+ .+++++|+|.+.. +...+ +++.+. + +++.|--|.+|.+| +|+++.++++++++...
T Consensus 182 ~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~~l~~~--- 258 (370)
T PRK09105 182 TPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKLARF--- 258 (370)
T ss_pred cCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHHHHHHhc---
Confidence 984 222 3589999998763 32222 333222 2 55556669999999 99999999988766431
Q ss_pred eeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 355 VFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 355 ~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
..++++.....+...+|+ +.+-++...++.+++.+.+++.|++.+
T Consensus 259 ------------~~~~~~~~~~~aa~~~L~---~~~~~~~~~~~~~~~r~~l~~~L~~~g 303 (370)
T PRK09105 259 ------------GHNPLPVPAAAAGLASLR---DPKLVPQRRAENAAVREDTIAWLKKKG 303 (370)
T ss_pred ------------CCCCcCHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 012344444444444443 221256666777888888888888763
No 97
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.16 E-value=8.1e-09 Score=111.63 Aligned_cols=243 Identities=13% Similarity=0.099 Sum_probs=138.7
Q ss_pred CCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhccC
Q psy8733 62 LPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMN 141 (621)
Q Consensus 62 ~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~~ 141 (621)
++++-++++.+.+.+.. ... + ...++.|+.+++++|.+. .++ + +|||. |++++...++
T Consensus 8 ~~~~~~~~v~~~~~~~~--------~~~-g----~~~~~le~~la~~~g~~~--~v~-~-~sgt~-----al~~~l~al~ 65 (380)
T TIGR03588 8 IDQDDIDAVVEVLKSDF--------LTQ-G----PTVPAFEEALAEYVGAKY--AVA-F-NSATS-----ALHIACLALG 65 (380)
T ss_pred CCHHHHHHHHHHHhcCC--------ccC-C----hhHHHHHHHHHHHHCCCe--EEE-E-cCHHH-----HHHHHHHHcC
Confidence 56667888877663311 011 1 246778999999999863 454 4 36888 6877777778
Q ss_pred CCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCcc
Q psy8733 142 VPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEAS 221 (621)
Q Consensus 142 ~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 221 (621)
+++||+|++... .|.+ +...++..|...+..+..
T Consensus 66 ~~~Gd~Viv~~~----~~~~-----------------------~~~~~~~~G~~~~~~~~~------------------- 99 (380)
T TIGR03588 66 VGPGDRVWTTPI----TFVA-----------------------TANCALYCGAKVDFVDID------------------- 99 (380)
T ss_pred CCCCCEEEeCCc----chHH-----------------------HHHHHHHcCCEEEEEecC-------------------
Confidence 889999888753 2211 122344566543333210
Q ss_pred ccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCC----CCceEEEEecccccccccccc-----
Q psy8733 222 YLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRD----PEASYLYYCDNETVDGVEFNY----- 292 (621)
Q Consensus 222 ~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~----~~t~~V~~thnET~tGv~~p~----- 292 (621)
...| .++++.+ + -.++ +++++|.++|. +|...|+
T Consensus 100 ----------~~~~--~~d~~~l---------------------~-~~i~~~~~~~t~~v~~~~~---~G~~~~~~~i~~ 142 (380)
T TIGR03588 100 ----------PDTG--NIDEDAL---------------------E-KKLAAAKGKLPKAIVPVDF---AGKSVDMQAIAA 142 (380)
T ss_pred ----------CCcC--CcCHHHH---------------------H-HHhhcccCCCceEEEEeCC---CCccCCHHHHHH
Confidence 0000 0122221 0 0233 57888888773 6887775
Q ss_pred ccccCCCcEEEecccccCCCcccccc-----c-ceEEeccc--cccC-CCccEEEEEchhHHhhhCCCC--Cceeecc--
Q psy8733 293 IPDSQGIPLVSDMSSNFLSRKFDVSK-----F-GVIIAGAQ--KNIG-PAGITVVIVREDLLEYALPIT--PTVFHFK-- 359 (621)
Q Consensus 293 i~~~~g~llvvDavSs~G~~pIDv~~-----~-gvl~asaq--K~lG-P~Glg~livr~~ll~~~~~~~--P~~ld~~-- 359 (621)
+++++|+++|+|++|++|+. ++... + |+.++|.| |+++ +.|-.++.-++++.+++++.. ....+..
T Consensus 143 l~~~~~~~lI~D~a~a~g~~-~~~~~~g~~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~ 221 (380)
T TIGR03588 143 LAKKHGLKIIEDASHALGAE-YGGKPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDEELAERMRLLRSHGITKDPLLF 221 (380)
T ss_pred HHHHcCCEEEEECCCcccCc-cCCEeCCCccccceEEEecCCCCcccccCceEEEECCHHHHHHHHHHHHCCCCCCcccc
Confidence 45689999999999999975 44332 3 37777776 9996 666556666677776654310 0000000
Q ss_pred -ccccCCCcc---------CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 360 -INADNNSVY---------NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 360 -~~~~~~s~~---------~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
........+ .-++..+..+ +..++ .++.+.++.+++++++++.|..++++.
T Consensus 222 ~~~~~~~~~~~~~~~g~n~~m~~l~aa~g----~~qL~---~l~~~~~~r~~~~~~~~~~L~~~~~~~ 282 (380)
T TIGR03588 222 EKQDEGPWYYEQQELGFNYRMTDIQAALG----LSQLK---KLDRFVAKRREIAARYDRLLKDLPYFT 282 (380)
T ss_pred cccccCcceeeeeccccccCccHHHHHHH----HHHHH---HHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 000000000 0111221212 22232 368888899999999999999887543
No 98
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.13 E-value=2.3e-08 Score=108.85 Aligned_cols=127 Identities=11% Similarity=0.130 Sum_probs=92.0
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC-c--------ccc-cccceEEeccccccCCCccEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR-K--------FDV-SKFGVIIAGAQKNIGPAGITV 337 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~-p--------IDv-~~~gvl~asaqK~lGP~Glg~ 337 (621)
++++|.+++..+.+|...|+ +++++|+++++|.++++|.. + .++ ++.+++..+..|.+|.+| |+
T Consensus 177 ~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G-G~ 255 (402)
T TIGR01821 177 RPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG-GY 255 (402)
T ss_pred CCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC-ce
Confidence 57899999999999999986 45688999999999996632 1 122 223577789999999777 78
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCcc-CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVY-NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~-~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++.++++++.+....+. ..+ .+.|...+++..++|+++.+. +.+.++..++.+++++.|++++
T Consensus 256 i~~~~~~~~~l~~~~~~-----------~~~t~~~~~~~~aaa~aaL~~~~~~---~~~~~~~~~~~~~l~~~L~~~g 319 (402)
T TIGR01821 256 IAASRKLIDAIRSYAPG-----------FIFTTSLPPAIAAGATASIRHLKES---QDLRRAHQENVKRLKNLLEALG 319 (402)
T ss_pred eecCHHHHHHHHHhCcC-----------ceecCcCCHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHHHHcC
Confidence 88888887765321111 111 234445667777899988764 5666777788899999998874
No 99
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.13 E-value=2.4e-08 Score=108.83 Aligned_cols=129 Identities=11% Similarity=0.097 Sum_probs=92.5
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC-c--------ccc-cccceEEeccccccCCCccE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR-K--------FDV-SKFGVIIAGAQKNIGPAGIT 336 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~-p--------IDv-~~~gvl~asaqK~lGP~Glg 336 (621)
+++++|.+++..+.+|...|+ +++++|+++|+|.++++|.. + .++ ++.++++.+-.|.+|++| |
T Consensus 177 ~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G-G 255 (407)
T PRK09064 177 DRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVMG-G 255 (407)
T ss_pred CCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhccC-c
Confidence 468899999999999999885 45688999999999985531 1 222 234578889999999888 8
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+++.++++.+.+....+.+ .....++ ....+++.++++++.+. +...++..++.+++++.|.+++
T Consensus 256 ~~~~~~~~~~~l~~~~~~~---------~~t~~~~-~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~l~~~L~~~g 320 (407)
T PRK09064 256 YIAGSAALVDAVRSYAPGF---------IFTTSLP-PAIAAAALASIRHLKES---NEERERHQERAAKLKAALDAAG 320 (407)
T ss_pred eEecCHHHHHHHHHhCccc---------cccCcCC-HHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHcC
Confidence 8888988877553221111 0112233 35567777899999775 3445778888899999998864
No 100
>PRK05764 aspartate aminotransferase; Provisional
Probab=99.11 E-value=2.5e-08 Score=107.81 Aligned_cols=133 Identities=11% Similarity=0.135 Sum_probs=85.6
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----C-----cccccccc--eEEecccccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----R-----KFDVSKFG--VIIAGAQKNI 330 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~-----pIDv~~~g--vl~asaqK~l 330 (621)
+++++++|.+++-.|+||...+. +++++++++++|.+.+... . .++.+..+ +++.|--|.+
T Consensus 161 l~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 240 (393)
T PRK05764 161 ITPKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAY 240 (393)
T ss_pred hCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccc
Confidence 45678999999999999998762 3457899999998754321 1 11122223 7777888999
Q ss_pred CCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q psy8733 331 GPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 331 GP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e 408 (621)
|++| +|.++.++++.+++.... ......++....+++..+|+.. +. -++.+.++.+++.+.+++
T Consensus 241 ~~~G~RiG~i~~~~~~~~~~~~~~------------~~~~~~~~~~~q~~~~~~l~~~-~~-~~~~~~~~~~~~~~~l~~ 306 (393)
T PRK05764 241 AMTGWRLGYAAGPKELIKAMSKLQ------------SHSTSNPTSIAQYAAVAALNGP-QD-EVEEMRQAFEERRDLMVD 306 (393)
T ss_pred cCccceeEEEecCHHHHHHHHHHH------------hhcccCCChHHHHHHHHHHcCC-hH-HHHHHHHHHHHHHHHHHH
Confidence 9889 799998988887653210 1112233334444444444311 11 356677777788888889
Q ss_pred HHHccCCc
Q psy8733 409 EIDNSDKF 416 (621)
Q Consensus 409 ~L~~~~g~ 416 (621)
.|++++|+
T Consensus 307 ~L~~~~g~ 314 (393)
T PRK05764 307 GLNEIPGL 314 (393)
T ss_pred HHhhCCCC
Confidence 88877544
No 101
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.10 E-value=5.1e-08 Score=106.43 Aligned_cols=128 Identities=11% Similarity=0.134 Sum_probs=89.6
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC-Ccc--------cc-cccceEEeccccccCCCccE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS-RKF--------DV-SKFGVIIAGAQKNIGPAGIT 336 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~-~pI--------Dv-~~~gvl~asaqK~lGP~Glg 336 (621)
+++++|.+++..+.+|...|+ +++++++++++|.++++|. -|. ++ ++.++++.+--|.+|.+| |
T Consensus 176 ~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~G-G 254 (406)
T PRK13393 176 HRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMG-G 254 (406)
T ss_pred CCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcccC-c
Confidence 367899999999999999996 4567899999999998655 121 11 123467778999999777 7
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCcc-CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVY-NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~-~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+++.++++.+.+.... .+..+ ++.|....+++.++|+++.+. +.. .++.+++.+++++.|.+++
T Consensus 255 ~~~~~~~~~~~l~~~~-----------~~~~~t~~~~p~~~aa~~aaL~~~~~~-~~~--~~~~~~~~~~l~~~L~~~g 319 (406)
T PRK13393 255 YITGSAALCDFIRSFA-----------SGFIFTTSLPPAVAAGALASVRHLKAS-SAE--RERHQDRVARLRARLDKAG 319 (406)
T ss_pred eeeCCHHHHHHHHHhC-----------cCceecCccCHHHHHHHHHHHHHHhhC-HHH--HHHHHHHHHHHHHHHHHcC
Confidence 8877888776543211 11112 345556677888999998765 322 3556778889999998763
No 102
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.08 E-value=1e-09 Score=121.20 Aligned_cols=145 Identities=15% Similarity=0.195 Sum_probs=87.6
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCc--cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAG--ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~G--lg~liv 340 (621)
+++++++|++++..|++|...|+ +++++|+++|+|.+++.+....++ ++| +++.|+||++|++| +|.+++
T Consensus 146 i~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl-~~gaDivv~S~tK~lgg~g~~~Gg~v~ 224 (431)
T PRK08248 146 ITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPI-EHGADIVVHSATKFIGGHGTSIGGVIV 224 (431)
T ss_pred cCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCChh-HcCCCEEEEcCccccCCCCCceEEEEE
Confidence 45689999999999999999996 456889999999998855444444 344 99999999999777 777777
Q ss_pred chh-H-Hhh------hCCCCCceeec--cccccCCCccCCchHHHHHHHHHHHH----HHHhhCCH---HHHHHHHHHHH
Q psy8733 341 RED-L-LEY------ALPITPTVFHF--KINADNNSVYNTPPTFVVHVIQRVFA----WIKRQGGL---AKMEQNSLQKS 403 (621)
Q Consensus 341 r~~-l-l~~------~~~~~P~~ld~--~~~~~~~s~~~TP~v~~I~aL~~aL~----~i~~~gGl---~~i~~r~~~la 403 (621)
..+ . +.. +....+.+.+. ...........+........++..+. |+... |+ +.+.+++.+.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~r-gl~tl~~R~~~~~~nA 303 (431)
T PRK08248 225 DSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQ-GLETLHLRMERHSENA 303 (431)
T ss_pred eCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhc-CcCcHHHHHHHHHHHH
Confidence 433 1 110 10111111000 00000000000001111222222222 55554 54 57788889999
Q ss_pred HHHHHHHHccCCc
Q psy8733 404 VLLYQEIDNSDKF 416 (621)
Q Consensus 404 ~~L~e~L~~~~g~ 416 (621)
..|-+.|++.+++
T Consensus 304 ~~la~~L~~~p~v 316 (431)
T PRK08248 304 LAVAKFLEEHEAV 316 (431)
T ss_pred HHHHHHHHhCCCc
Confidence 9999999998864
No 103
>PRK05957 aspartate aminotransferase; Provisional
Probab=99.07 E-value=3.7e-08 Score=106.88 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=81.1
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccc---cCC---Cc-ccc-ccc--ceEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSN---FLS---RK-FDV-SKF--GVIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs---~G~---~p-IDv-~~~--gvl~asaqK~lG 331 (621)
+++++++|+++|..|.||..++. +++++|+++|+|.+-. +.. .+ ..+ +.. .+++.|-=|.+|
T Consensus 157 i~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 236 (389)
T PRK05957 157 ITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYG 236 (389)
T ss_pred cCcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhcc
Confidence 45679999999999999999882 3467899999999832 111 11 122 222 266677779999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKR-QGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~-~gGl~~i~~r~~~la~~L~e 408 (621)
++| +|.++.++++.+++... . .....+++.+.-+++. ..+.+ .+-+++..++.+++.+.+.+
T Consensus 237 ~~GlRiG~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~q~~~~---~~l~~~~~~~~~~~~~~~~~r~~l~~ 301 (389)
T PRK05957 237 FASWRIGYMVIPIHLLEAIKKI-------Q-----DTILICPPVVSQYAAL---GALQVGKSYCQQHLPEIAQVRQILLK 301 (389)
T ss_pred CccceeEEEecCHHHHHHHHHH-------H-----hhcccCCCcHHHHHHH---HHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 999 99999999988765321 0 0111222333333333 33322 00134445556777777888
Q ss_pred HHHccCC
Q psy8733 409 EIDNSDK 415 (621)
Q Consensus 409 ~L~~~~g 415 (621)
.|+++++
T Consensus 302 ~L~~~~~ 308 (389)
T PRK05957 302 SLGQLQD 308 (389)
T ss_pred HHHhcCC
Confidence 8877653
No 104
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=99.06 E-value=2.6e-08 Score=108.05 Aligned_cols=126 Identities=14% Similarity=0.154 Sum_probs=82.5
Q ss_pred CCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC---Ccc-cccccc--eEEeccccccCCCc--cEE
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS---RKF-DVSKFG--VIIAGAQKNIGPAG--ITV 337 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~---~pI-Dv~~~g--vl~asaqK~lGP~G--lg~ 337 (621)
++++++|.+|+-.|.||...+. +.+. .+++|+|-+-.-.. ..+ .+++.+ +++.|--|.+|.+| +|+
T Consensus 173 ~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~-~~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy 251 (380)
T PLN03026 173 THKPKLLFLTSPNNPDGSIISDDDLLKILEL-PILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGY 251 (380)
T ss_pred ccCCcEEEEeCCCCCCCCCCCHHHHHHHHhc-CCEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhhcCcccccee
Confidence 4678999999999999999985 3333 38899999853211 111 223444 77788889999998 788
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++.++++++++..... +..++.....++.++|+- .+. ++++.++.++..+++++.|++++
T Consensus 252 ~~~~~~~i~~l~~~~~--------------~~~~~~~~q~aa~~aL~~-~~~--~~~~~~~~~~~r~~l~~~L~~~~ 311 (380)
T PLN03026 252 GAFPLSIIEYLWRAKQ--------------PYNVSVAAEVAACAALSN-PKY--LEDVKNALVEERERLFGLLKEVP 311 (380)
T ss_pred eecCHHHHHHHHHhcC--------------CCCCCHHHHHHHHHHhhC-HHH--HHHHHHHHHHHHHHHHHHHHHCC
Confidence 9988888776532110 122344555555556531 111 44556666777788888888775
No 105
>PLN02721 threonine aldolase
Probab=99.06 E-value=1.3e-08 Score=107.92 Aligned_cols=76 Identities=17% Similarity=0.309 Sum_probs=53.6
Q ss_pred CCceEEEEecc-cccccccccc--------ccccCCCcEEEecccccCC-----Cccc--ccccceEEeccccccC-CCc
Q psy8733 272 PEASYLYYCDN-ETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS-----RKFD--VSKFGVIIAGAQKNIG-PAG 334 (621)
Q Consensus 272 ~~t~~V~~thn-ET~tGv~~p~--------i~~~~g~llvvDavSs~G~-----~pID--v~~~gvl~asaqK~lG-P~G 334 (621)
+++++|++++. .+.+|...|. +++++|+++++|+++.++. .+.+ +...+.++.+.||+++ |-|
T Consensus 136 ~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G 215 (353)
T PLN02721 136 PTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVG 215 (353)
T ss_pred CcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCcee
Confidence 57899999885 4567887762 3567899999999887654 2222 2234577778999997 544
Q ss_pred cEEEEEchhHHhhh
Q psy8733 335 ITVVIVREDLLEYA 348 (621)
Q Consensus 335 lg~livr~~ll~~~ 348 (621)
++++.++++.+.+
T Consensus 216 -~~~~~~~~~~~~~ 228 (353)
T PLN02721 216 -SVIVGSKSFIRKA 228 (353)
T ss_pred -eEEecCHHHHHhH
Confidence 5677788877654
No 106
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.05 E-value=2.8e-08 Score=119.00 Aligned_cols=137 Identities=14% Similarity=0.163 Sum_probs=87.3
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccc-cccc--eEEecccccc------CCCccEE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDV-SKFG--VIIAGAQKNI------GPAGITV 337 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv-~~~g--vl~asaqK~l------GP~Glg~ 337 (621)
.++..|++++.+|..++..|+ +++++|++++||+++..+...+.- .++| ++.+++|||| |+||+|+
T Consensus 639 ~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~ 718 (954)
T PRK05367 639 DNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADVSHLNLHKTFCIPHGGGGPGVGP 718 (954)
T ss_pred CCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCEEEecCcccCCCCcCCCCCceEE
Confidence 357788888888774445665 346789999999999866555442 3454 9999999996 3666889
Q ss_pred EEEchhHHhhhCCCCCcee-eccccccCCCccCCchHHHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHHHHHHHc
Q psy8733 338 VIVREDLLEYALPITPTVF-HFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQG--GLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~l-d~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~g--Gl~~i~~r~~~la~~L~e~L~~ 412 (621)
+++++.+. +..|... .........+...|.++.....+-.+.-|+...| |+.++.++...+++++.+.|++
T Consensus 719 l~vr~~l~----p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~ 792 (954)
T PRK05367 719 IGVKAHLA----PFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKD 792 (954)
T ss_pred Eeeccccc----ccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99997553 3333321 0000011112223444433345555777777662 4566666666999999999976
No 107
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=99.04 E-value=4.4e-08 Score=105.01 Aligned_cols=130 Identities=12% Similarity=0.096 Sum_probs=80.9
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEeccc-cc--CC-Cccc-ccccc--eEEeccccccCCCc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSS-NF--LS-RKFD-VSKFG--VIIAGAQKNIGPAG 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavS-s~--G~-~pID-v~~~g--vl~asaqK~lGP~G 334 (621)
+.+++++|++++-.|+||...+. +++++++++|+|.+- .+ .. ..++ ++..+ +++.|..|++|.+|
T Consensus 139 ~~~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 218 (356)
T PRK08056 139 LTPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPG 218 (356)
T ss_pred ccCCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcc
Confidence 34789999999999999999882 345789999999972 11 11 1111 23344 78899999999887
Q ss_pred --cEEEEEc-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 335 --ITVVIVR-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 335 --lg~livr-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
+|+++.. +++++++.. .....+++....+++..+++ ...-+..+.++.++..+++++.|+
T Consensus 219 ~RiG~~v~~~~~~~~~l~~--------------~~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~ 281 (356)
T PRK08056 219 LRLGYLVNSDDAAVARMRR--------------QQMPWSINAFAALAGEVILQ---DRAYQQATWQWLAEEGARFYQALC 281 (356)
T ss_pred hhheeeecCCHHHHHHHHH--------------hCCCCchhHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888774 456554421 01123344444444333332 110134556667777788888888
Q ss_pred ccCCc
Q psy8733 412 NSDKF 416 (621)
Q Consensus 412 ~~~g~ 416 (621)
+++|+
T Consensus 282 ~~~~~ 286 (356)
T PRK08056 282 ALPLL 286 (356)
T ss_pred cCCCc
Confidence 76543
No 108
>PRK07568 aspartate aminotransferase; Provisional
Probab=99.03 E-value=5.8e-08 Score=105.14 Aligned_cols=131 Identities=16% Similarity=0.260 Sum_probs=81.8
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---C----cccccc-cc--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---R----KFDVSK-FG--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~----pIDv~~-~g--vl~asaqK~lG 331 (621)
+++++++|.+++..|.||...+. +++++++++|+|.+-.-.. . ..++.. .+ +++.|-.|.+|
T Consensus 159 ~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~ 238 (397)
T PRK07568 159 ITPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYS 238 (397)
T ss_pred cCccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhcc
Confidence 45678999999999999998862 3457899999998764221 1 123332 23 77788899999
Q ss_pred CCc--cEEEEEc-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVR-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 332 P~G--lg~livr-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e 408 (621)
.+| +|+++.. +++.+++.. ... ..+ +++.....++..+|+.-.+ -++.+.++.+++.+.+++
T Consensus 239 ~~G~R~G~~~~~~~~~~~~~~~----------~~~--~~~-~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~ 303 (397)
T PRK07568 239 ACGARIGCLISKNKELIAAAMK----------LCQ--ARL-SPPTLEQIGAAALLDTPES--YFDEVREEYKKRRDILYE 303 (397)
T ss_pred CCCcceEEEecCCHHHHHHHHH----------Hhh--ccC-CCCcHHHHHHHHHhhCCHH--HHHHHHHHHHHHHHHHHH
Confidence 777 6777764 556554311 000 112 2333444455555542111 256667777788888888
Q ss_pred HHHccCC
Q psy8733 409 EIDNSDK 415 (621)
Q Consensus 409 ~L~~~~g 415 (621)
.|++++|
T Consensus 304 ~L~~~~~ 310 (397)
T PRK07568 304 ELNKIPG 310 (397)
T ss_pred HHhcCCC
Confidence 8887653
No 109
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=99.01 E-value=3.1e-08 Score=110.15 Aligned_cols=277 Identities=19% Similarity=0.177 Sum_probs=177.6
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
++.+....+++.+|+...+.+...+.. +.+ --..++....+=+++-..++++++.|+...=.|+ .|||+
T Consensus 62 p~~~~~~~~~~~~~~~a~~~~~~~~~~--nl~-----d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t-~GgTe--- 130 (460)
T COG0076 62 PRANLAGFCPTRVPPVAAELLVSALNK--NLG-----DPDESPAAAELEERVVNMLSDLLGAPEEASGTFT-SGGTE--- 130 (460)
T ss_pred cceEEEccCCCCCHHHHHHHHHHHHhh--cCC-----CcccChhHHHHHHHHHHHHHHHhCCCCCCceEEE-cChHH---
Confidence 456888899999999998888887632 111 2345677788888999999999999876556776 67898
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhh----------CCCC-cEEEEEcChHHHHHHHHHHHhCCceee
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLI----------GRTG-KADYVVTGSWSKKAAAEAEKYGKVNLV 198 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~----------~~g~-~~~~v~tG~~~~~~~~~a~~~G~~~~~ 198 (621)
-|++|-.+ +.|.. ..+. ++..-.+.+|+ |.+-|+-.|.....
T Consensus 131 ---an~lal~a----------------------ar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s--~~Kaa~~lG~~~~~ 183 (460)
T COG0076 131 ---ANLLALLA----------------------ARERWRKRALAESGKPGGKPNIVCSETAHFS--FEKAARYLGLGLRR 183 (460)
T ss_pred ---HHHHHHHH----------------------HHHHHHHHhhhcccccCCCCeEEecCcchhH--HHHHHHHhCCCcee
Confidence 34444211 11111 0011 23333345554 34455556653332
Q ss_pred ecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceE--
Q psy8733 199 IPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASY-- 276 (621)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~-- 276 (621)
.+.. |. -..+|+++++ + ++++++..
T Consensus 184 v~~~------~~-------------------------~~~id~~~l~---------------------~-~i~~~t~~g~ 210 (460)
T COG0076 184 VPTV------PT-------------------------DYRIDVDALE---------------------E-AIDENTIGGV 210 (460)
T ss_pred EEec------cC-------------------------ccccCHHHHH---------------------H-HHHhhccCce
Confidence 2211 00 0112223320 0 23344444
Q ss_pred EEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc--cc-------ceEEeccccccC-CCccEEEEEc
Q psy8733 277 LYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS--KF-------GVIIAGAQKNIG-PAGITVVIVR 341 (621)
Q Consensus 277 V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~--~~-------gvl~asaqK~lG-P~Glg~livr 341 (621)
|.-+..-|-+|.+=|+ ++++++++++|||+..-...|+.=. .| +-+..++|||+. |.|.|++++|
T Consensus 211 vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~r 290 (460)
T COG0076 211 VVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFR 290 (460)
T ss_pred EEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEE
Confidence 8888888999998886 4568999999999987776655321 12 279999999997 9999999999
Q ss_pred hh-HHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 342 ED-LLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 342 ~~-ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
++ .+.+.....+.|+.-. ...+....+|.+...+.++-..++++-.+ |..++.++..+++++|.+.|++.+.|.+.
T Consensus 291 d~e~l~~~~~~~~~yl~~~-~~~~~ti~~sr~~~~~~~~~~~l~~lG~e-Gy~~l~~~~~~~a~~la~~l~~~~~~e~~ 367 (460)
T COG0076 291 DEEALRRILIFADYYLPGG-GIPNFTILGSRPGRQALALYANLRRLGRE-GYRKLLDRTLELARYLAEELEKLGDFELV 367 (460)
T ss_pred CHHHhhhhhhcccccCCCC-CcCceeEeeccchHHHHHHHHHHHHhCHh-HHHHHHHHHHHHHHHHHHHHHhCCCcEee
Confidence 88 4544333222232110 11112233566666777788888888666 89999999999999999999999766654
No 110
>PRK08114 cystathionine beta-lyase; Provisional
Probab=99.01 E-value=6.2e-09 Score=113.72 Aligned_cols=125 Identities=11% Similarity=0.074 Sum_probs=91.7
Q ss_pred CCCCceEEEEecccccccccccc--c---cccC--CCcEEEecccccCCCcccccccc--eEEecccccc-CCC--ccEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--I---PDSQ--GIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPA--GITV 337 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--i---~~~~--g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~--Glg~ 337 (621)
++++|++|++-+..|++|.+.|+ | ++++ |++++||.+++.+.. ++..+|| +++.|+||++ |+. +.|+
T Consensus 144 l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~-~~pl~~GaDivv~S~tKyl~Ghsdv~~G~ 222 (395)
T PRK08114 144 IQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL-FKALDFGIDISIQAGTKYLVGHSDAMIGT 222 (395)
T ss_pred cCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc-cCHHHcCCcEEEEcCcccccCCCcceeEE
Confidence 56789999999999999999997 3 4555 599999999999887 9999887 9999999999 575 8898
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQ--GGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~--gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
++.+++.++++.. +. ..-+ .+++.+.. |+... .-++-+.+|+.+.+..+-+.|++.|.
T Consensus 223 v~~~~~~~~~l~~-------~~--~~~G---~~~~p~~a--------~l~~rgl~TL~lR~~~~~~na~~va~~L~~hp~ 282 (395)
T PRK08114 223 AVANARCWEQLRE-------NS--YLMG---QMVDADTA--------YMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPE 282 (395)
T ss_pred EEcCHHHHHHHHH-------HH--Hhcc---CCCCHHHH--------HHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8888887665421 00 0011 12222222 23222 13667788888889999999998874
No 111
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=99.01 E-value=4.7e-08 Score=99.62 Aligned_cols=144 Identities=15% Similarity=0.175 Sum_probs=103.2
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEchhH
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVREDL 344 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~~l 344 (621)
.+.+..+||..-..|.+.|. +++++|+++++.++-++|-+|++..+.+ |+++|+||.+. ..=+|++.++++.
T Consensus 156 ~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE~ 235 (382)
T COG1103 156 PPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIGVLAMSEEW 235 (382)
T ss_pred CceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEecCccchhccCCeeEEeehhHH
Confidence 46777899999999999995 6678999999999999999999999886 99999999995 4448999999998
Q ss_pred HhhhCCCCCceeeccccccCC-CccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCC
Q psy8733 345 LEYALPITPTVFHFKINADNN-SVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQA 423 (621)
Q Consensus 345 l~~~~~~~P~~ld~~~~~~~~-s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~ 423 (621)
-+.........+.-+...--+ ...+-| |..|-+++....+. -..|+..-++++++.+.++.++|+......|
T Consensus 236 ae~V~r~Sg~~~~~KEvellGCT~rGap----ivTlmASfP~V~eR---VkrWdeEv~kaR~fv~elEkigg~~qlG~rP 308 (382)
T COG1103 236 AEIVLRRSGRAFPKKEVELLGCTVRGAP----IVTLMASFPHVVER---VKRWDEEVEKARWFVAELEKIGGVKQLGERP 308 (382)
T ss_pred HHHHHhhcccccccceeeeecccccCch----HHHHHhcCHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHhCCCC
Confidence 766533221111111000001 112333 44455566666653 3456777889999999999999887765444
No 112
>PLN02822 serine palmitoyltransferase
Probab=99.01 E-value=3.1e-07 Score=102.97 Aligned_cols=130 Identities=12% Similarity=0.149 Sum_probs=93.1
Q ss_pred CCc-eEEEEecccccccccccc-----ccccCCCcEEEecccccCCC---------cccc--cccceEEeccccccCCCc
Q psy8733 272 PEA-SYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR---------KFDV--SKFGVIIAGAQKNIGPAG 334 (621)
Q Consensus 272 ~~t-~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~---------pIDv--~~~gvl~asaqK~lGP~G 334 (621)
+++ ++|.+....+.+|.+.|+ +++++|+++++|-+.++|.. ..++ ++.|++++|-.|.+|.+|
T Consensus 243 ~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~G 322 (481)
T PLN02822 243 KKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEG 322 (481)
T ss_pred CCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCC
Confidence 344 677777776778999996 45689999999999997752 2333 356688999999999989
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccC--CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYN--TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~--TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
|+++.++++++.+.... ...+|. .||.. ..+..++|+.+.+ .+.+.++.+++.+++++.|++
T Consensus 323 -G~i~g~~~ii~~~~~~~-----------~~~~fsa~lPp~~-~~Aa~~aL~~l~~---~~~~~~~l~~~~~~l~~~L~~ 386 (481)
T PLN02822 323 -GFCTGSARVVDHQRLSS-----------SGYVFSASLPPYL-ASAAITAIDVLED---NPSVLAKLKENIALLHKGLSD 386 (481)
T ss_pred -eEEEcCHHHHHHHHhcC-----------CceeeccccCHHH-HHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHh
Confidence 99999999887653211 122333 34443 3444468887654 257788899999999999998
Q ss_pred cCCcc
Q psy8733 413 SDKFY 417 (621)
Q Consensus 413 ~~g~~ 417 (621)
+.|+.
T Consensus 387 ~~g~~ 391 (481)
T PLN02822 387 IPGLS 391 (481)
T ss_pred cCCcc
Confidence 75554
No 113
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=99.00 E-value=9.9e-08 Score=101.60 Aligned_cols=128 Identities=10% Similarity=0.116 Sum_probs=84.0
Q ss_pred CceEEEEecccccccccccc-----ccc-cCCCcEEEeccc-ccCCCc-ccc-cccc--eEEeccccccCCCc--cEEEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPD-SQGIPLVSDMSS-NFLSRK-FDV-SKFG--VIIAGAQKNIGPAG--ITVVI 339 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~-~~g~llvvDavS-s~G~~p-IDv-~~~g--vl~asaqK~lGP~G--lg~li 339 (621)
++++|.+++-.|+||...+. +.+ .+++++|+|-+- .++..+ ..+ +..+ +++.|--|.+|.+| +|+++
T Consensus 144 ~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~ 223 (353)
T PRK05387 144 PNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAI 223 (353)
T ss_pred cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhhcchhhhceeee
Confidence 45788999999999999984 333 248999999642 232211 111 2233 88889999999888 89999
Q ss_pred EchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 340 VREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 340 vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
.++++++++..... .....|++....+++..+++. .+.++.+.++.+++.+.+++.|.+++
T Consensus 224 ~~~~~~~~l~~~~~-----------~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~g 284 (353)
T PRK05387 224 GHPELIEALNRVKN-----------SFNSYPLDRLAQAGAIAAIED---EAYFEETRAKVIATRERLVEELEALG 284 (353)
T ss_pred cCHHHHHHHHHhhc-----------cCCCCCcCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99888876542111 011234556666666555542 21356677777888888889888763
No 114
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=98.99 E-value=6.9e-08 Score=104.74 Aligned_cols=124 Identities=15% Similarity=0.225 Sum_probs=83.2
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cC--CCc--cccccc--ceEEeccccccCC--C
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FL--SRK--FDVSKF--GVIIAGAQKNIGP--A 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G--~~p--IDv~~~--gvl~asaqK~lGP--~ 333 (621)
+++++|.+....+.+|+..| + +++++|+++|+|-+++ +| ... .+.... |++++| |+++. .
T Consensus 177 ~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~~s--K~l~~g~~ 254 (400)
T PTZ00125 177 PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVLLG--KALSGGLY 254 (400)
T ss_pred CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEEEEc--ccccCCCc
Confidence 57899998777788899887 3 4568999999999976 55 222 222222 466665 99963 3
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
.+|+++.++++.+.+... ....+++. +.....+..++|+++.+. ++ .++.+++.+++++.|.++
T Consensus 255 ~ig~v~~~~~~~~~~~~~-----------~~~~t~~~-~~~~~~aa~~~l~~i~~~-~~---~~~~~~~~~~l~~~l~~l 318 (400)
T PTZ00125 255 PISAVLANDDVMLVIKPG-----------EHGSTYGG-NPLACAVAVEALEVLKEE-KL---AENAQRLGEVFRDGLKEL 318 (400)
T ss_pred CcEEEEEcHHHHhhccCC-----------CCCCCCCc-CHHHHHHHHHHHHHHHhc-CH---HHHHHHHHHHHHHHHHHH
Confidence 689999999998765321 01223332 234556667889998765 54 456666778888887764
No 115
>PRK07324 transaminase; Validated
Probab=98.98 E-value=1.3e-07 Score=102.28 Aligned_cols=131 Identities=11% Similarity=0.117 Sum_probs=81.2
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC---c---ccccccceEEeccccccCCCc-
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR---K---FDVSKFGVIIAGAQKNIGPAG- 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~---p---IDv~~~gvl~asaqK~lGP~G- 334 (621)
+++++++|++++..|.||...+. +++++|+++|+|.+-+-... . .+..+-.+.+.|.-|.+|.+|
T Consensus 150 ~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~ 229 (373)
T PRK07324 150 VRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGI 229 (373)
T ss_pred CCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEecchhhcCCccc
Confidence 45689999999999999999882 34578999999987542211 1 122112377788899999888
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++++++..... .... +++...-.+...+|+...+. ++.+.+..++..+.+.+.|++.
T Consensus 230 RiG~i~~~~~li~~~~~~~~-----------~~~~-~~~~~~q~~a~~~l~~~~~~--l~~~~~~~~~~~~~l~~~l~~~ 295 (373)
T PRK07324 230 RVGWIAANEEVIDILRKYRD-----------YTMI-CAGVFDDMLASLALEHRDAI--LERNRKIVRTNLAILDEWVAKE 295 (373)
T ss_pred eeEEEecCHHHHHHHHHHhC-----------cEEe-cCChHHHHHHHHHHcCHHHH--HHHHHHHHHHHHHHHHHHHhcC
Confidence 5999988888876643110 1112 22233333334445432222 4455555566666777777665
Q ss_pred C
Q psy8733 414 D 414 (621)
Q Consensus 414 ~ 414 (621)
+
T Consensus 296 ~ 296 (373)
T PRK07324 296 P 296 (373)
T ss_pred C
Confidence 4
No 116
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=98.97 E-value=6.4e-08 Score=103.46 Aligned_cols=242 Identities=14% Similarity=0.146 Sum_probs=141.2
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhh
Q psy8733 59 PAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISS 138 (621)
Q Consensus 59 Ps~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~ 138 (621)
|-+.|+.+++++.+.+.+.. ..+.. +. -..+.|+.++++++.+.+.+|+++ +|+++ +++++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~--------~~~Y~-~~--~~~~lr~~ia~~~~~~~~~~I~~t-~G~~~-----~i~~~~~ 99 (356)
T PRK04870 37 PYRLPAELRAELGERLAEVA--------LNRYP-DP--RAAALKAALRAAMGVPAGADVLLG-NGSDE-----LIQLLAL 99 (356)
T ss_pred CCCCCHHHHHHHHHHhhccc--------cccCC-CC--CHHHHHHHHHHHhCcCCCCcEEEc-CCHHH-----HHHHHHH
Confidence 34789999999998763210 01111 11 136789999999998654467765 55666 3444322
Q ss_pred ccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCC
Q psy8733 139 SMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP 218 (621)
Q Consensus 139 ~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (621)
-+..+||++++..+++++ +...++..|...+..+.
T Consensus 100 --------------------------~~~~~gd~vlv~~P~y~~--~~~~~~~~g~~~~~i~~----------------- 134 (356)
T PRK04870 100 --------------------------ACAKPGATVLAPEPGFVM--YRMSAKLAGLEFVGVPL----------------- 134 (356)
T ss_pred --------------------------HhcCCCCEEEECCCCHHH--HHHHHHHcCCEEEEecC-----------------
Confidence 223455555555555443 34567777864332221
Q ss_pred CccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc-----c
Q psy8733 219 EASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY-----I 293 (621)
Q Consensus 219 ~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~-----i 293 (621)
+..|+ ++++++ +......++++|++|+-.|+||...+. +
T Consensus 135 -------------~~~~~--~d~~~l---------------------~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i 178 (356)
T PRK04870 135 -------------TADFT--LDLPAM---------------------LAAIAEHRPALVFLAYPNNPTGNLFDDADVERI 178 (356)
T ss_pred -------------CCCCC--CCHHHH---------------------HHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHH
Confidence 00111 111221 111113478999999999999999985 3
Q ss_pred cccCCCcEEEecccc-cCCCc-c-cccccc--eEEeccccccCCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCC
Q psy8733 294 PDSQGIPLVSDMSSN-FLSRK-F-DVSKFG--VIIAGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNS 366 (621)
Q Consensus 294 ~~~~g~llvvDavSs-~G~~p-I-Dv~~~g--vl~asaqK~lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s 366 (621)
.+..++++|+|.+-. +.... . .++..+ +++.|--| +|.+| +|+++.++++++++.... .
T Consensus 179 ~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~~-------------~ 244 (356)
T PRK04870 179 IEAAPGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVR-------------P 244 (356)
T ss_pred HHHCCCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHHHHHHcc-------------C
Confidence 332378899997653 33211 1 233444 77888899 89888 999999998887654311 0
Q ss_pred ccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 367 VYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 367 ~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
..+.+....++...++++. + -++...++.+++.+.+.+.|+.++|+
T Consensus 245 -~~~~~~~~q~~a~~~l~~~-~--~~~~~~~~~~~~~~~l~~~L~~~~~~ 290 (356)
T PRK04870 245 -PYNVNVLTQATALFALEHV-D--VLDAQAAQLRAERTRLAAALAALPGV 290 (356)
T ss_pred -CCcCCHHHHHHHHHHHhCH-H--HHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 1123334444444444432 1 25666677777888888888876544
No 117
>PRK08064 cystathionine beta-lyase; Provisional
Probab=98.95 E-value=1.5e-08 Score=110.63 Aligned_cols=126 Identities=12% Similarity=0.084 Sum_probs=83.1
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC--cccccccceEEecccccc-CCCc--cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR--KFDVSKFGVIIAGAQKNI-GPAG--ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~--pIDv~~~gvl~asaqK~l-GP~G--lg~li 339 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+++.+.. |+++. .|+++.|+||++ ||.| .|+++
T Consensus 135 l~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~~~g-~Divv~S~tK~~~G~~~~laG~~v 213 (390)
T PRK08064 135 IKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLDLG-ADVVLHSATKFLAGHSDVLAGLAV 213 (390)
T ss_pred cCCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCchhhC-CcEEEeecceeccCCccceeEEEE
Confidence 56789999999999999999986 45678999999999877654 44321 359999999999 5888 48888
Q ss_pred Ech-hHHhhhCCCCCceeeccccccCCCccCC-chHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 340 VRE-DLLEYALPITPTVFHFKINADNNSVYNT-PPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 340 vr~-~ll~~~~~~~P~~ld~~~~~~~~s~~~T-P~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
+++ ++.+++.+... .+++ .+....+. +++ ...-+..+.+++.+.+..+.+.|++.+.
T Consensus 214 ~~~~~~~~~l~~~~~-------------~~g~~~~~~~a~l---~~~---gl~tl~~R~~~~~~~a~~la~~L~~~~~ 272 (390)
T PRK08064 214 VKDEELAQKLYFLQN-------------SFGAVLGVQDCWL---VLR---GLKTLHVRLEHSSETANKIALYLQEHPK 272 (390)
T ss_pred eCCHHHHHHHHHHHH-------------hcCCCCCHHHHHH---HHc---ccCcHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 874 56555432110 0111 11111111 111 1112456667777778888899988774
No 118
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.94 E-value=4.6e-08 Score=108.39 Aligned_cols=72 Identities=13% Similarity=0.186 Sum_probs=56.5
Q ss_pred CCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccccc--ceEEeccccccCCC--ccEEEE
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKF--GVIIAGAQKNIGPA--GITVVI 339 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~--gvl~asaqK~lGP~--Glg~li 339 (621)
.+++++++|++.+..+.+|...|+ +++++|+++|||++++.|.. .+..++ |++++|+||++|+. |+|.++
T Consensus 151 ~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~-~~p~~~GaDivv~S~~K~l~G~gd~~gG~v 229 (437)
T PRK05613 151 AVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAAL-VRPLELGADVVVASLTKFYTGNGSGLGGVL 229 (437)
T ss_pred hCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccc-cChHHhCCCEEEeeccceecCCCcceeEEE
Confidence 356789999988888888999996 45689999999999988754 333344 49999999999876 457777
Q ss_pred Ec
Q psy8733 340 VR 341 (621)
Q Consensus 340 vr 341 (621)
+.
T Consensus 230 v~ 231 (437)
T PRK05613 230 ID 231 (437)
T ss_pred Ee
Confidence 73
No 119
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=98.94 E-value=1.2e-09 Score=117.92 Aligned_cols=96 Identities=24% Similarity=0.359 Sum_probs=83.6
Q ss_pred HHHHHhhcccccc-cCCcEEeeecHhHhhhcC------CCCCceeeeeecccC---CCccCCCchhHHHHHHHHHHHHHh
Q psy8733 449 FGVIIAGAQKNIG-PAGITVVIVREDLLEYAL------PITPTVFHFKINADN---NSVYNTPPTFVVHVIQRVFAWIKR 518 (621)
Q Consensus 449 ~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~------~~~p~~~~y~~~~~~---~s~~nTP~~~~iy~~~~vl~~~~~ 518 (621)
.|++++|+||++| |.|++++++|++++++.. ..+|..+++.....+ ++++||||+..+|-++..++|+++
T Consensus 176 ~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~ 255 (361)
T TIGR01366 176 TDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNG 255 (361)
T ss_pred CCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHH
Confidence 7999999999999 559999999999998754 334666666543333 689999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhccC
Q psy8733 519 QGGLAKMEQNSLQKSVLLYQEIDNSD 544 (621)
Q Consensus 519 ~gg~~~~~~~~~~ka~~lY~~id~~~ 544 (621)
.||++.+.++.+++++.+|+.+++..
T Consensus 256 ~gg~e~~~~r~~~l~~~l~~~l~~~~ 281 (361)
T TIGR01366 256 NGGLDWAVARTADSSSRLYSWAQERP 281 (361)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999998876
No 120
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=98.94 E-value=1.8e-08 Score=109.93 Aligned_cols=128 Identities=15% Similarity=0.141 Sum_probs=83.1
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC--CcccccccceEEeccccccCCCc--c-EEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS--RKFDVSKFGVIIAGAQKNIGPAG--I-TVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~--~pIDv~~~gvl~asaqK~lGP~G--l-g~li 339 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+.+.+. .|+++. .|+++.|.+|++|++| + |+++
T Consensus 143 i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~pl~~g-~Divv~S~sK~~~g~g~~~GG~vv 221 (390)
T PRK08133 143 VRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQPLKLG-ADVVIHSATKYLDGQGRVLGGAVV 221 (390)
T ss_pred cCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCCchhhC-CcEEEeecceeecCCcceEeEEEE
Confidence 56789999999888999999986 4578999999999876554 444332 2589999999998877 4 5666
Q ss_pred EchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 340 VREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 340 vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
.+++.++++.. + .. . .-.+++....+.+...++ .+..+.+++.+.+..+.+.|++.+++
T Consensus 222 ~~~~~~~~~~~----~---~~---~--~g~~~~~~~a~~~l~gl~------tl~~R~~~~~~~a~~la~~L~~~p~v 280 (390)
T PRK08133 222 GSKELMEEVFG----F---LR---T--AGPTLSPFNAWVFLKGLE------TLSLRMEAHSANALALAEWLEAHPGV 280 (390)
T ss_pred cCHHHHHHHHH----H---HH---H--hCCCCCHHHHHHHHcccc------hHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 67776654321 0 00 0 011222222222111222 25556666677888888999887754
No 121
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=98.94 E-value=2.4e-07 Score=100.12 Aligned_cols=130 Identities=11% Similarity=0.053 Sum_probs=82.9
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC----CCccccc---cc-c--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL----SRKFDVS---KF-G--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G----~~pIDv~---~~-g--vl~asaqK~lG 331 (621)
+.+++++|++|+-.|+||...+. +++++++++|+|.+.+-. ..+..+. .. + +.+.|-=|.+|
T Consensus 161 ~~~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g 240 (383)
T TIGR03540 161 IAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYN 240 (383)
T ss_pred ccccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccC
Confidence 34678999999888999999983 345789999999998632 1233322 11 2 55667779999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|+++.++++.+++... .. . ...+++....+++..+++-..+ -++.+.++.+++.+.+++.
T Consensus 241 ~~GlRiG~~i~~~~l~~~~~~~-------~~----~-~~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~ 306 (383)
T TIGR03540 241 MTGWRIGMAVGNADLIAGLGKV-------KT----N-VDSGVFQAIQYAAIAALNGPQD--VVKEIRKIYQRRRDLLLEA 306 (383)
T ss_pred CccceeeEEeCCHHHHHHHHHH-------HH----h-cccCCChHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHH
Confidence 999 99999999888765321 10 1 1112222333343333322111 1455566777778888888
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|++.
T Consensus 307 L~~~ 310 (383)
T TIGR03540 307 LKKI 310 (383)
T ss_pred HHhC
Confidence 8876
No 122
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=98.93 E-value=3.1e-07 Score=99.76 Aligned_cols=128 Identities=11% Similarity=0.188 Sum_probs=81.6
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----Cccccccc--c--eEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKFDVSKF--G--VIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pIDv~~~--g--vl~asaqK~lGP~G- 334 (621)
+++++|.+++.+|+||+..+. +++++++++|+|.+.+-.. ...++.++ + +++.|..|.+|.+|
T Consensus 165 ~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~Gl 244 (391)
T PRK07309 165 DKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGW 244 (391)
T ss_pred CCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccc
Confidence 468999999889999998763 3457899999999976432 22233322 2 78899999999889
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|+++.++++++++.... .....+++....+++..+|+--... .....++.+++.+.+++.|++.
T Consensus 245 RvG~~v~~~~~~~~~~~~~------------~~~~~~~~~~~q~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~~ 310 (391)
T PRK07309 245 RIGLIFAPAEFTAQLIKSH------------QYLVTAATTMAQFAAVEALTNGKDD--ALPMKKEYIKRRDYIIEKMTDL 310 (391)
T ss_pred eeEEEEeCHHHHHHHHHHH------------hhcccCCChHHHHHHHHHHhCChhH--HHHHHHHHHHHHHHHHHHHHHC
Confidence 888999999887653210 1111233444444444443311111 2344556666777788887765
No 123
>PRK06207 aspartate aminotransferase; Provisional
Probab=98.93 E-value=3.4e-07 Score=100.17 Aligned_cols=131 Identities=11% Similarity=0.156 Sum_probs=82.1
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----Cccccc---c-cc--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKFDVS---K-FG--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pIDv~---~-~g--vl~asaqK~lG 331 (621)
+.+++++|.+|+-+|.||...+. +++++++++|+|-+-+-.. .+..+. . .+ +++.|-.|.+|
T Consensus 175 ~~~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~ 254 (405)
T PRK06207 175 FKAGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTES 254 (405)
T ss_pred hhhcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhcc
Confidence 34578899999999999999983 2457899999999866421 111121 1 23 78888999999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGG-LAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gG-l~~i~~r~~~la~~L~e 408 (621)
.+| +|.++.++++++++..... ....+++ .+...++ ..++.+..+ +++..++++++.+.+++
T Consensus 255 lpGlRiG~ii~~~~l~~~~~~~~~-----------~~~~~~~-~~~q~a~---~~~l~~~~~~~~~~~~~~~~~r~~l~~ 319 (405)
T PRK06207 255 LSGYRLGVAFGSPAIIDRMEKLQA-----------IVSLRAA-GYSQAVL---RTWFSEPDGWMKDRIARHQAIRDDLLR 319 (405)
T ss_pred CcccceEEEEcCHHHHHHHHHHHh-----------HhccCCC-HHHHHHH---HHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 779 9999999988876632110 0111222 2222332 333332101 45556666677777888
Q ss_pred HHHccCC
Q psy8733 409 EIDNSDK 415 (621)
Q Consensus 409 ~L~~~~g 415 (621)
.|++++|
T Consensus 320 ~L~~~~~ 326 (405)
T PRK06207 320 VLRGVEG 326 (405)
T ss_pred HHhcCCC
Confidence 8876543
No 124
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=98.93 E-value=3.1e-08 Score=107.66 Aligned_cols=126 Identities=10% Similarity=0.098 Sum_probs=84.8
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEecccccc-CCCc--cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNI-GPAG--ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~l-GP~G--lg~liv 340 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+++.+....+++ ..|++++|++|++ ||.| .|++++
T Consensus 128 i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~ 207 (378)
T TIGR01329 128 LGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAV 207 (378)
T ss_pred cCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEEecceeccCCccceeEEEEe
Confidence 45789999999999999999996 4568899999999987776433332 2359999999999 5877 899989
Q ss_pred chhHH-hhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 341 REDLL-EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQ--GGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 341 r~~ll-~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~--gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
+++.+ +++.+. . ...+ .+.+.... |+... .-++.+.++..+.+..+.+.|++.+.
T Consensus 208 ~~~~~~~~~~~~-------~---~~~G--~~~~~~~a--------~l~~~~l~tl~~R~e~~~~na~~la~~L~~~~~ 265 (378)
T TIGR01329 208 KGEEIAKKVYFL-------Q---NSTG--SGLAPFDC--------WLLLRGIKTLAIRIEKQQENARAIAMFLSTHPR 265 (378)
T ss_pred CcHHHHHHHHHH-------H---HhcC--CcCCHHHH--------HHHHccCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 76543 444210 0 0001 01111111 22222 14677778888888888888887764
No 125
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=98.92 E-value=7.1e-08 Score=103.32 Aligned_cols=127 Identities=17% Similarity=0.252 Sum_probs=81.3
Q ss_pred CCceEEEEecccccccccccc-----ccc-cCCCcEEEecccccCCCc---ccc-cccc--eEEeccccccCCCc--cEE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPD-SQGIPLVSDMSSNFLSRK---FDV-SKFG--VIIAGAQKNIGPAG--ITV 337 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~-~~g~llvvDavSs~G~~p---IDv-~~~g--vl~asaqK~lGP~G--lg~ 337 (621)
+++++|++|+-.|.||...+. +.+ ..++++|+|.+..-.... .++ ..++ +++.|-.|++|++| +|+
T Consensus 146 ~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~ 225 (354)
T PRK04635 146 DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTLSKAFALAGARCGF 225 (354)
T ss_pred cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCEEEEechHHHhhhhHHHHhh
Confidence 578999999999999999984 222 246899999985332211 122 1223 67889999999888 699
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHH---HHHHHHHHHHHHHHccC
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ---NSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~---r~~~la~~L~e~L~~~~ 414 (621)
++.++++++.+..... .++.+ .... ..++.++.+. |.+.+.+ +.++..+++++.|++++
T Consensus 226 ~i~~~~~~~~l~~~~~-------------~~~~~-~~~~---~~a~~~l~~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~ 287 (354)
T PRK04635 226 TLANEELIEILMRVIA-------------PYPVP-LPVS---EIATQALSEA-GLARMKFQVLDLNAQGARLQAALSMYG 287 (354)
T ss_pred hhCCHHHHHHHHhhcC-------------CCCCC-HHHH---HHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999876642111 11222 2222 2345566544 5554443 44555577888888775
Q ss_pred Cc
Q psy8733 415 KF 416 (621)
Q Consensus 415 g~ 416 (621)
++
T Consensus 288 ~~ 289 (354)
T PRK04635 288 GA 289 (354)
T ss_pred Cc
Confidence 44
No 126
>PRK07682 hypothetical protein; Validated
Probab=98.91 E-value=1.1e-07 Score=102.65 Aligned_cols=131 Identities=13% Similarity=0.184 Sum_probs=86.2
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCc------ccccc---cceEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRK------FDVSK---FGVIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~p------IDv~~---~gvl~asaqK~lGP 332 (621)
+.+++++|.+|+-.|.||...+. +++++++++|+|-+.+-.... ..+.. -.+++.|..|.+|.
T Consensus 151 ~~~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 230 (378)
T PRK07682 151 ITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAM 230 (378)
T ss_pred cCcccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccC
Confidence 45578999999889999998763 345789999999986644311 11122 12788888999998
Q ss_pred Cc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 333 ~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
+| +|+++.++++++++... . .....++|.....++..+|+.-. . -++++.++.+++.+++++.|
T Consensus 231 ~GlR~G~~~~~~~~i~~l~~~-------~-----~~~~~~~~~~~q~a~~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~L 296 (378)
T PRK07682 231 TGWRLGFIAAPVYFSEAMLKI-------H-----QYSMMCAPTMAQFAALEALRAGN-D-DVIRMRDSYRKRRNFFVTSF 296 (378)
T ss_pred hhhhhhhhhcCHHHHHHHHHH-------H-----HhhccCCCHHHHHHHHHHHhCCh-H-HHHHHHHHHHHHHHHHHHHH
Confidence 89 89999999988876321 0 01112233334344333332111 1 26677778888888999999
Q ss_pred HccC
Q psy8733 411 DNSD 414 (621)
Q Consensus 411 ~~~~ 414 (621)
.+++
T Consensus 297 ~~~~ 300 (378)
T PRK07682 297 NEIG 300 (378)
T ss_pred HHCC
Confidence 8763
No 127
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=98.91 E-value=3.5e-07 Score=99.39 Aligned_cols=184 Identities=13% Similarity=0.136 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhccC
Q psy8733 62 LPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMN 141 (621)
Q Consensus 62 ~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~~ 141 (621)
++++.++++.+.+..-.-.| .....++.++.+++.++.+ +++++ +|||. +++++...++
T Consensus 9 ~~~~e~~a~~~~~~~~~~~~------------~g~~~~~~e~~la~~~g~~---~~v~~-~sgt~-----aL~~~l~al~ 67 (376)
T TIGR02379 9 VTGQELEYIAEAISEGKLSG------------DGPFSRRCETWLENRTGTK---KALLT-PSCTA-----ALEMAALLLD 67 (376)
T ss_pred CCHHHHHHHHHHHHcCCccC------------CcHHHHHHHHHHHHHhCCC---eEEEe-CCHHH-----HHHHHHHHcC
Confidence 56777888888763211000 1234566777888888874 47776 67898 6887777778
Q ss_pred CCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCcc
Q psy8733 142 VPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEAS 221 (621)
Q Consensus 142 ~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 221 (621)
+++||+|++..- .|.+. ...+...|...+..+.. + ++
T Consensus 68 ~~pGd~Viv~~~----t~~~~-----------------------~~~~~~~G~~~v~vd~d----------~--~~---- 104 (376)
T TIGR02379 68 IQPGDEVIMPSY----TFVST-----------------------ANAFVLRGAKIVFVDIR----------P--DT---- 104 (376)
T ss_pred CCCcCEEEECCC----CcHHH-----------------------HHHHHHcCCEEEEEecC----------C--Cc----
Confidence 899999988754 23221 11223456543332211 0 00
Q ss_pred ccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc-----cccc
Q psy8733 222 YLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY-----IPDS 296 (621)
Q Consensus 222 ~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~-----i~~~ 296 (621)
| .++++++ + -.+++++++|..+| .+|...|+ ++++
T Consensus 105 -------------~--~~d~~~l---------------------e-~~i~~~tk~Iip~~---~~G~~~d~~~I~~la~~ 144 (376)
T TIGR02379 105 -------------M--NIDETLI---------------------E-SAITHRTKAIVPVH---YAGVACDMDTIMALANK 144 (376)
T ss_pred -------------C--CCCHHHH---------------------H-HhcCcCceEEEEeC---CCCCccCHHHHHHHHHH
Confidence 0 0111111 1 13566899997765 46888885 4578
Q ss_pred CCCcEEEecccccCCCcccc---cccc-eEEecc--ccccC--CCccEEEEEchhHHhhhCC
Q psy8733 297 QGIPLVSDMSSNFLSRKFDV---SKFG-VIIAGA--QKNIG--PAGITVVIVREDLLEYALP 350 (621)
Q Consensus 297 ~g~llvvDavSs~G~~pIDv---~~~g-vl~asa--qK~lG--P~Glg~livr~~ll~~~~~ 350 (621)
+|+++|.|++|++|+. .+- ..++ +.++|. -|.+. +.|-.++.-++++.+++..
T Consensus 145 ~~i~vIeDaa~~~g~~-~~~~~~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~ 205 (376)
T TIGR02379 145 HQLFVIEDAAQGVMST-YKGRALGSIGHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEI 205 (376)
T ss_pred CCCEEEEECccccCCc-cCCcccCCCCCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHH
Confidence 9999999999999874 332 2332 444554 45563 4553344445777777654
No 128
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=98.91 E-value=3.8e-08 Score=107.02 Aligned_cols=126 Identities=10% Similarity=0.027 Sum_probs=87.8
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC--cccccccceEEeccccccC-CCc--cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR--KFDVSKFGVIIAGAQKNIG-PAG--ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~--pIDv~~~gvl~asaqK~lG-P~G--lg~li 339 (621)
+++++++|.+.+..+.+|...|+ +++++|++++||.+++.|.. |++. ..|+++.|++|++| +.+ .|+++
T Consensus 132 i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~pl~~-gaDivv~S~tK~l~G~~d~~gG~v~ 210 (377)
T TIGR01324 132 IQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFKPLEH-GVDISIQAGTKYLVGHSDIMIGTVV 210 (377)
T ss_pred cCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCcccc-CceEEEecCceeccCCCCceEEEEE
Confidence 56789999999999999999986 45688999999999999876 4432 12499999999995 665 57888
Q ss_pred EchhHHhhhCCCCCceeeccccccCCCccC-CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 340 VREDLLEYALPITPTVFHFKINADNNSVYN-TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 340 vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~-TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
.+++.++++... ...++ +.+.+..+.+...++- +..+.+++.+.+..+.+.|++.+.
T Consensus 211 ~~~~~~~~l~~~-------------~~~~G~~l~p~~a~~~~rgl~t------l~~R~~~~~~~a~~la~~L~~~p~ 268 (377)
T TIGR01324 211 ANARTWDQLREH-------------SYLMGQMVDADDAYTTLRGLRT------LGVRLKQHQESSLAIAKWLSEQPE 268 (377)
T ss_pred eCHHHHHHHHHH-------------HHHhCCCCCHHHHHHHHhhhhh------HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 888877654210 01112 2233444443334432 445567777778888888888763
No 129
>PRK07582 cystathionine gamma-lyase; Validated
Probab=98.90 E-value=2.8e-08 Score=107.47 Aligned_cols=126 Identities=13% Similarity=0.161 Sum_probs=86.0
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEeccc--ccCCCcccccccceEEecccccc-CCCcc--EEEEEc
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSS--NFLSRKFDVSKFGVIIAGAQKNI-GPAGI--TVVIVR 341 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavS--s~G~~pIDv~~~gvl~asaqK~l-GP~Gl--g~livr 341 (621)
+++++|++++-.|.+|...|+ +++++|++++||.++ ..+..|+++. .|+++.|.+|++ ||+|+ |+++.+
T Consensus 131 ~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p~~~g-~Divv~S~sK~l~G~~g~~~G~v~~~ 209 (366)
T PRK07582 131 AGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRPLELG-ADLVVASDTKALTGHSDLLLGYVAGR 209 (366)
T ss_pred cCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCccccCchhcC-CcEEEecccccccCCCCeeEEEEEcC
Confidence 578999999888899988875 346789999999985 4777888753 369999999999 58884 888875
Q ss_pred -hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 342 -EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 342 -~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
+++++++.. +.. ..-.+++.+..+.+...++ -++.+.+++.+.+..+.+.|++.+.+
T Consensus 210 ~~~l~~~l~~-------~~~-----~~g~~~~~~~a~l~~r~l~------tl~~R~~~~~~na~~la~~L~~~p~v 267 (366)
T PRK07582 210 DPELMAAVER-------WRL-----LAGAIPGPFEAWLAHRSLG------TLGLRFARQCANALAVAELLAGHPAV 267 (366)
T ss_pred cHHHHHHHHH-------HHH-----HhCCCCCHHHHHHHHhccc------cHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 566554421 111 0112343333333222222 25566677788889999999987743
No 130
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=98.90 E-value=1.1e-06 Score=95.99 Aligned_cols=126 Identities=13% Similarity=0.146 Sum_probs=82.6
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCc-----------c-cccccceEEeccccccCCCc
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRK-----------F-DVSKFGVIIAGAQKNIGPAG 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~p-----------I-Dv~~~gvl~asaqK~lGP~G 334 (621)
+++++|.+-...+.+|...|+ +++++|+++++|-++++|..- + .....|+++.|-.|.+||.|
T Consensus 137 ~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~g 216 (392)
T PLN03227 137 DQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVG 216 (392)
T ss_pred CCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhhccC
Confidence 467888877777778999885 457899999999999866320 1 12244688888889999775
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCC--chHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNT--PPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~T--P~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
|++..++++.+.... .....++++ ||... ++..++++.+.+. +.+.++.+++.+++++.|.+
T Consensus 217 -g~v~~~~~~~~~~~~-----------~~~~~~~~~~~~p~~~-~aa~~al~~~~~~---~~~~~~l~~~~~~l~~~L~~ 280 (392)
T PLN03227 217 -GMTVGSEEVVDHQRL-----------SGSGYCFSASAPPFLA-KADATATAGELAG---PQLLNRLHDSIANLYSTLTN 280 (392)
T ss_pred -cEEecCHHHHHHHHH-----------hCcCccccCCCCHHHH-HHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHh
Confidence 455678887654321 112334543 34333 3333455444332 45677788899999999986
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
.
T Consensus 281 ~ 281 (392)
T PLN03227 281 S 281 (392)
T ss_pred c
Confidence 3
No 131
>PLN02590 probable tyrosine decarboxylase
Probab=98.89 E-value=4.7e-07 Score=102.61 Aligned_cols=146 Identities=13% Similarity=0.074 Sum_probs=100.7
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccc--------ccccceEEeccccccC-CCccEEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFD--------VSKFGVIIAGAQKNIG-PAGITVV 338 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pID--------v~~~gvl~asaqK~lG-P~Glg~l 338 (621)
.+-+|+.+...|.+|..=|+ +++++|+.++|||+-+-.....+ ++..|-+....|||++ |.+.|++
T Consensus 287 ~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~l 366 (539)
T PLN02590 287 IPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPL 366 (539)
T ss_pred CcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEE
Confidence 35688999999999999886 55789999999987654443332 2333589999999997 9999999
Q ss_pred EEchhH-HhhhCCCCCceeeccccc-------cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 339 IVREDL-LEYALPITPTVFHFKINA-------DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 339 ivr~~l-l~~~~~~~P~~ld~~~~~-------~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
++|+.- +.+.....|.|+...... ...+...+-. +...-+-.+|+.+-.+ |+.++.+++.++++++.+.|
T Consensus 367 lvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr-~raLklW~~lr~~G~~-G~~~~i~~~~~lA~~~~~~l 444 (539)
T PLN02590 367 WVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRR-FRSLKLWMVLRLYGSE-NLRNFIRDHVNLAKHFEDYV 444 (539)
T ss_pred EecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCc-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 999752 222222234444221100 0001111111 3445566778888777 89999999999999999999
Q ss_pred HccCCcccCc
Q psy8733 411 DNSDKFYECP 420 (621)
Q Consensus 411 ~~~~g~~~~~ 420 (621)
.+.++|++..
T Consensus 445 ~~~~~fel~~ 454 (539)
T PLN02590 445 AQDPSFEVVT 454 (539)
T ss_pred hcCCCeEEec
Confidence 9998887653
No 132
>PRK07505 hypothetical protein; Provisional
Probab=98.88 E-value=6.7e-07 Score=97.54 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=74.5
Q ss_pred CCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC-----C-----cccccccc--eEEeccccccCCC
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS-----R-----KFDVSKFG--VIIAGAQKNIGPA 333 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~-----~-----pIDv~~~g--vl~asaqK~lGP~ 333 (621)
.++++++.+++..+++|...|. +++++|+++|+|.+++++. . .++....+ +++.|.-|.+|.+
T Consensus 177 ~~~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~ 256 (402)
T PRK07505 177 KTNKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS 256 (402)
T ss_pred hcCCCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc
Confidence 3456788888777888988885 4568899999999986531 1 12221123 6677888999866
Q ss_pred ccEEEEE-chhHHhhhCCCCCceeeccccccCCCcc-CCchHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy8733 334 GITVVIV-REDLLEYALPITPTVFHFKINADNNSVY-NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNS 399 (621)
Q Consensus 334 Glg~liv-r~~ll~~~~~~~P~~ld~~~~~~~~s~~-~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~ 399 (621)
| |++.+ ++++.+.+... ....++ ++|+..++.++.++++.+.+. .+..+.++.
T Consensus 257 G-g~~~~~~~~~~~~~~~~-----------~~~~t~~~~~~~~a~aa~~a~l~~~~~~-~~~~~~~~l 311 (402)
T PRK07505 257 G-GVIMLGDAEQIELILRY-----------AGPLAFSQSLNVAALGAILASAEIHLSE-ELDQLQQKL 311 (402)
T ss_pred C-eEEEeCCHHHHHHHHHh-----------CCCceeCCCCCHHHHHHHHHHHHHHhcc-CcHHHHHHH
Confidence 7 66655 56666554321 112233 356777888888888877665 555444433
No 133
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=98.86 E-value=4.7e-07 Score=96.85 Aligned_cols=127 Identities=14% Similarity=0.144 Sum_probs=80.9
Q ss_pred CCCCceEEEEecccccccccccc-----ccc--cCCCcEEEecccccCC----Ccc--c-ccccc--eEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPD--SQGIPLVSDMSSNFLS----RKF--D-VSKFG--VIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~--~~g~llvvDavSs~G~----~pI--D-v~~~g--vl~asaqK~lGP~ 333 (621)
+++++++|.+|+..+.||...+. +.+ .+++++|+|-+-.-.. .+- . ++..+ +++.|-=|.+|.+
T Consensus 148 ~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 227 (359)
T PRK03158 148 IDEQTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLA 227 (359)
T ss_pred cCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCc
Confidence 45678999999999999999985 333 2589999999875322 111 1 12334 6667778999999
Q ss_pred cc--EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 GI--TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 Gl--g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
|+ |+++.++++++++.... ..++ ++....+++..+++ +..=++.+.++.++..+.+++.|+
T Consensus 228 GlRiG~~v~~~~~~~~~~~~~-------------~~~~-~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~ 290 (359)
T PRK03158 228 ALRVGYGIASEELIEKLNIAR-------------PPFN-TTRIAQYAAIAALE---DQAFLKECVEKNAEGLEQYYAFCK 290 (359)
T ss_pred chhhehhcCCHHHHHHHHHhc-------------CCCC-CCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96 99999999887664211 1123 34444444444443 210144555556666667777777
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
+.
T Consensus 291 ~~ 292 (359)
T PRK03158 291 EY 292 (359)
T ss_pred HC
Confidence 65
No 134
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=98.86 E-value=6.2e-07 Score=99.46 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=54.3
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccc--ccccc---eEEeccccccC-CCccEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFD--VSKFG---VIIAGAQKNIG-PAGITVV 338 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pID--v~~~g---vl~asaqK~lG-P~Glg~l 338 (621)
+++++++|.++|. .|...++ +++++|+++|+|++|++|+..-+ +-.+| +..+.+.|.+. -.| |+|
T Consensus 156 i~~~tkaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~gd~~~fSf~~~k~~~~geG-G~l 231 (438)
T PRK15407 156 VSPKTKAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFGDIATLSFYPAHHITMGEG-GAV 231 (438)
T ss_pred cCcCCeEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccCceEEEeCCCCCCccccCc-eEE
Confidence 5678999999983 5776664 45789999999999999997755 33454 44555667773 457 899
Q ss_pred EEchhHHhh
Q psy8733 339 IVREDLLEY 347 (621)
Q Consensus 339 ivr~~ll~~ 347 (621)
+.+++.+.+
T Consensus 232 ~t~d~~l~~ 240 (438)
T PRK15407 232 FTNDPLLKK 240 (438)
T ss_pred EECCHHHHH
Confidence 998776643
No 135
>PLN02880 tyrosine decarboxylase
Probab=98.86 E-value=1.7e-07 Score=105.41 Aligned_cols=146 Identities=15% Similarity=0.067 Sum_probs=90.6
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcc-----ccc---ccceEEeccccccC-CCccEEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKF-----DVS---KFGVIIAGAQKNIG-PAGITVV 338 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pI-----Dv~---~~gvl~asaqK~lG-P~Glg~l 338 (621)
.+-+|..+...|.+|..-|+ +++++|+.++||++.+.+.... .++ ..|.+....|||++ |.|.|++
T Consensus 239 ~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~l 318 (490)
T PLN02880 239 IPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLL 318 (490)
T ss_pred ccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEE
Confidence 35678889999999999996 5678999999999988876544 233 34699999999997 9999999
Q ss_pred EEchhHH-hhhCCCCCceeeccccccCCCcc----CCchH---HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 339 IVREDLL-EYALPITPTVFHFKINADNNSVY----NTPPT---FVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 339 ivr~~ll-~~~~~~~P~~ld~~~~~~~~s~~----~TP~v---~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
++|+... .+.....+.|+....... ...+ .|++. +....+-.+|+.+-.+ |+.++..+..++++++.+.|
T Consensus 319 lvr~~~~l~~~~~~~~~Yl~~~~~~~-~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~-g~~~~i~~~~~lA~~~~~~l 396 (490)
T PLN02880 319 WVKDRNALIQSLSTNPEFLKNKASQA-NSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVE-NLQSYIRNHIKLAKEFEQLV 396 (490)
T ss_pred EEeCHHHHHHHHccCHHHhcCccccc-cCCCChhccCcCCCCcccHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 9996432 111112233331110000 0001 01100 0111222234443223 45555555559999999999
Q ss_pred HccCCcccCc
Q psy8733 411 DNSDKFYECP 420 (621)
Q Consensus 411 ~~~~g~~~~~ 420 (621)
++.++|.+..
T Consensus 397 ~~~~~~el~~ 406 (490)
T PLN02880 397 AQDSRFEVVT 406 (490)
T ss_pred hcCCCEEEec
Confidence 9988777653
No 136
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=98.85 E-value=4.9e-08 Score=104.26 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=59.5
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC-c-cc-ccccc--eEEeccccccCCCc--cEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR-K-FD-VSKFG--VIIAGAQKNIGPAG--ITV 337 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~-p-ID-v~~~g--vl~asaqK~lGP~G--lg~ 337 (621)
+++++++|.+++..+.||...|. +++.+++++|+|.+..-... + .. +++++ +++.|--|.+|.+| +|+
T Consensus 155 ~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~ 234 (361)
T PRK00950 155 ITEKTKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGY 234 (361)
T ss_pred hccCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcCchhhcch
Confidence 34578999999999999999985 45677999999999864331 1 11 12334 55677789999888 799
Q ss_pred EEEchhHHhhhC
Q psy8733 338 VIVREDLLEYAL 349 (621)
Q Consensus 338 livr~~ll~~~~ 349 (621)
++.++++.+.+.
T Consensus 235 ~~~~~~~~~~~~ 246 (361)
T PRK00950 235 GFVPEWLIDYYM 246 (361)
T ss_pred hcCCHHHHHHHH
Confidence 998888876553
No 137
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=98.84 E-value=1.2e-06 Score=95.60 Aligned_cols=133 Identities=14% Similarity=0.195 Sum_probs=79.0
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Cc-ccc---ccc-c-eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RK-FDV---SKF-G-VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~p-IDv---~~~-g-vl~asaqK~lGP 332 (621)
+++++++|.+++-.|.||...+. +++++|+++|+|.+-+-.. .+ ..+ +.. . +++.|--|.++.
T Consensus 166 ~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~ 245 (403)
T TIGR01265 166 ADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVV 245 (403)
T ss_pred hCcCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCC
Confidence 45678999999999999998862 3457899999999865322 11 122 222 2 677888999987
Q ss_pred Cc--cEEEEEch--hH-----HhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVRE--DL-----LEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKS 403 (621)
Q Consensus 333 ~G--lg~livr~--~l-----l~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la 403 (621)
+| +|++++.+ ++ ++.+.. + ......++.....++..+|+.-. .+=+++..++.++..
T Consensus 246 pGlRiG~~v~~~~~~~~~~~~~~~~~~-------~------~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~ 311 (403)
T TIGR01265 246 PGWRLGWIIIHDPHGIFRDTVLQGLKN-------L------LQRILGPATIVQGALPDILENTP-QEFFDGKISVLKSNA 311 (403)
T ss_pred CcceEEEEEEeCchhhhHHHHHHHHHH-------H------hhhhcCCChHHHHHHHHHHHhCh-HHHHHHHHHHHHHHH
Confidence 77 78887742 22 221110 0 00111234455555555554211 101455566666667
Q ss_pred HHHHHHHHccCCc
Q psy8733 404 VLLYQEIDNSDKF 416 (621)
Q Consensus 404 ~~L~e~L~~~~g~ 416 (621)
+.+.+.|+..+|+
T Consensus 312 ~~l~~~L~~~~~~ 324 (403)
T TIGR01265 312 ELCYEELKDIPGL 324 (403)
T ss_pred HHHHHHHhcCCCc
Confidence 7788888776433
No 138
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=98.84 E-value=5e-09 Score=113.63 Aligned_cols=160 Identities=16% Similarity=0.194 Sum_probs=124.9
Q ss_pred HHHHHhhcccccc-cCCcEEeeecHhHhhhcCCC-----CCceeeeee---cc---cCCCccCCCchhHHHHHHHHHHHH
Q psy8733 449 FGVIIAGAQKNIG-PAGITVVIVREDLLEYALPI-----TPTVFHFKI---NA---DNNSVYNTPPTFVVHVIQRVFAWI 516 (621)
Q Consensus 449 ~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~-----~p~~~~y~~---~~---~~~s~~nTP~~~~iy~~~~vl~~~ 516 (621)
.|++++|+||.|| |.|++++++|++++++..+. .|..++|.. .. ..++++||||++.+|.+...|+|+
T Consensus 185 iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l 264 (378)
T PRK03080 185 LDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWA 264 (378)
T ss_pred CcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHH
Confidence 6999999999996 89999999999999875543 355565554 11 236799999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHHhccCCc--ccc-cCCCC---------C---cccHHHHHHHHHccCcc-ccCCCC-C
Q psy8733 517 KRQGGLAKMEQNSLQKSVLLYQEIDNSDKF--YEC-PVQAG---------F---PLDELFLKEAKAHNMIQ-LKGHRL-V 579 (621)
Q Consensus 517 ~~~gg~~~~~~~~~~ka~~lY~~id~~~~~--~~~-~v~~~---------~---~~~~~~~~~~~~~~i~~-~~g~~~-~ 579 (621)
++.||++.++++.++.++.+|+.+++.+++ |.. +-..+ . ..+..+++.+.++||+. ..+|+. .
T Consensus 265 ~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~~~~~~~~~l~~~~i~v~~g~~~~~~ 344 (378)
T PRK03080 265 NSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQAAVDAAAVAKLLRENGAVDIEPYRDAP 344 (378)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCchHHHHHHHHHHHHHcCCeeccccccCCC
Confidence 999999999999999999999999987642 211 10111 0 02344666666667764 456765 6
Q ss_pred CccceeeccCCCHHHHHHHHHHHHHHHHH
Q psy8733 580 GGIRASIYNAITVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 580 ~~~r~~~~~a~~~~~~~~l~~~~~~~~~~ 608 (621)
+.||+|.+...+.||++.|++.|++..++
T Consensus 345 ~~vRis~~~~~t~~di~~l~~al~~~~~~ 373 (378)
T PRK03080 345 NGLRIWCGPTVEPADVEALTPWLDWAFER 373 (378)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999987654
No 139
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=98.84 E-value=4.4e-07 Score=96.99 Aligned_cols=129 Identities=15% Similarity=0.134 Sum_probs=82.2
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccc---cCCCccccccc--c--eEEeccccccCCCc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSN---FLSRKFDVSKF--G--VIIAGAQKNIGPAG 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs---~G~~pIDv~~~--g--vl~asaqK~lGP~G 334 (621)
++++++++++++..|+||...+. +++++++++|+|.+.. .+..+..+..+ + +++.|-.|.+|.+|
T Consensus 133 ~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G 212 (350)
T TIGR03537 133 ILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSGMTG 212 (350)
T ss_pred hhhccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecccccCCcc
Confidence 44578999999999999998883 3457899999999875 33333333222 3 66668899999888
Q ss_pred --cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 335 --ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 335 --lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+|+++.++++.+++... . .....++++. ..+++.+++. ...-++.+.++.+++.+.+.+.|+.
T Consensus 213 lRiG~~~~~~~~~~~~~~~-------~----~~~~~~~~~~-~q~~~~~~l~---~~~~~~~~r~~l~~~~~~~~~~l~~ 277 (350)
T TIGR03537 213 YRSGFVAGDEKLISFLRKL-------R----ANFGVASPDF-VQAAAKAAWS---DDNHVLERRKIFKRKRDLFIEFFNK 277 (350)
T ss_pred ccceeeecCHHHHHHHHHH-------H----HhhccCCCHH-HHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89898888877655321 0 0111233332 2233333332 2213556667777777788888876
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
.
T Consensus 278 ~ 278 (350)
T TIGR03537 278 V 278 (350)
T ss_pred C
Confidence 5
No 140
>PRK08960 hypothetical protein; Provisional
Probab=98.83 E-value=1.1e-07 Score=102.87 Aligned_cols=131 Identities=13% Similarity=0.097 Sum_probs=82.0
Q ss_pred CCCCceEEEEecccccccccccc-----c---cccCCCcEEEecccccC---CCccccccc--c-eEEeccccccCCCc-
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----I---PDSQGIPLVSDMSSNFL---SRKFDVSKF--G-VIIAGAQKNIGPAG- 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i---~~~~g~llvvDavSs~G---~~pIDv~~~--g-vl~asaqK~lGP~G- 334 (621)
++++++++.+++-.|.||...+. + ++++++++|+|-+-.-. ..+..+-.. . +++.|-.|.+|.+|
T Consensus 162 ~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~Gl 241 (387)
T PRK08960 162 WNADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFGMTGW 241 (387)
T ss_pred hCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccCCEEEEeecccccCCccc
Confidence 45678899999999999999884 2 45789999999863211 111111122 2 78899999999999
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH-HHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA-WIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~-~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+|+++.++++++++..... .. ..+++.+...++..+++ ...+ -++.+.+..+++.+.+++.|++
T Consensus 242 RiG~~~~~~~~~~~~~~~~~-----------~~-~~~~s~~~q~a~~~~l~~~~~~--~l~~~~~~~~~~~~~l~~~L~~ 307 (387)
T PRK08960 242 RLGWLVAPPAAVPELEKLAQ-----------NL-YISASTPAQHAALACFEPETLA--ILEARRAEFARRRDFLLPALRE 307 (387)
T ss_pred EEEEEEcCHHHHHHHHHHHh-----------hh-ccCCCHHHHHHHHHHhhcCcHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998876532110 01 11223333333333332 1111 2455566667777788888887
Q ss_pred cC
Q psy8733 413 SD 414 (621)
Q Consensus 413 ~~ 414 (621)
.+
T Consensus 308 ~~ 309 (387)
T PRK08960 308 LG 309 (387)
T ss_pred cC
Confidence 53
No 141
>PRK06460 hypothetical protein; Provisional
Probab=98.83 E-value=1.1e-07 Score=103.43 Aligned_cols=128 Identities=9% Similarity=-0.002 Sum_probs=83.6
Q ss_pred CCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccCCCc---cEEEEEc
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIGPAG---ITVVIVR 341 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lGP~G---lg~livr 341 (621)
++++++|++++..|.+|...|+ +++++|+++|+|.+.+.+....+++ ..++++.|.+|++|..| .|+++.+
T Consensus 128 ~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~~~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~ 207 (376)
T PRK06460 128 SKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAGY 207 (376)
T ss_pred CCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCccccCChhhcCCCEEEeecceeccCCCCceEEEEecC
Confidence 5689999999999999999996 4567899999999987552211111 13499999999996433 7888888
Q ss_pred hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 342 EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 342 ~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
+++++++..... ....+.++ ...+.+...++|+. .+.++..+.+.++.+.|++.+.+
T Consensus 208 ~~l~~~l~~~~~-----------~~g~~~~~-~~a~~~l~~~~~l~------~r~~~~~~n~~~l~~~L~~~p~v 264 (376)
T PRK06460 208 GKLLNVIDQMRR-----------TLGTSLDP-HAAYLTLRGIKTLK------IRMDVINRNAEQIAEFLEGHPKV 264 (376)
T ss_pred HHHHHHHHHHHH-----------hcCCCCCH-HHHHHHHhchhhHH------HHHHHHHHHHHHHHHHHHcCCCc
Confidence 887766532100 00011222 23333334455553 44556677778888888887643
No 142
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=98.83 E-value=1e-07 Score=103.66 Aligned_cols=128 Identities=15% Similarity=0.178 Sum_probs=84.1
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEeccccc--CCCcccccccceEEeccccccCCCc--c-EEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNF--LSRKFDVSKFGVIIAGAQKNIGPAG--I-TVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~--G~~pIDv~~~gvl~asaqK~lGP~G--l-g~li 339 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+++. +..|+++. .|+++.|.+|++|.+| + |+++
T Consensus 136 i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~pl~~g-~Divv~S~sK~l~g~g~~~gG~vv 214 (380)
T TIGR01325 136 VKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQQPLKLG-ADVVVYSATKHIDGQGRVMGGVIA 214 (380)
T ss_pred cCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCchhhC-CCEEEeeccceecCCCCeEEEEEE
Confidence 45679999999988999999886 45678999999999864 44555432 3589999999998665 3 6777
Q ss_pred EchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 340 VREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 340 vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
.++++++++... . .. ...+.+.+..+.+...++. ++.+.+++.+.+..+.+.|++.|++
T Consensus 215 ~~~~~~~~l~~~-------~---~~--~g~~~~p~~a~~~l~~l~t------l~~r~~~~~~~a~~la~~L~~~p~v 273 (380)
T TIGR01325 215 GSEELMAEVAVY-------L---RH--TGPAMSPFNAWVLLKGLET------LSLRMQKQFDSALAIAEWLQAQPQV 273 (380)
T ss_pred eCHHHHHHHHHH-------H---Hh--hCCCCCHHHHHHHHhccCc------HHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 788876654310 0 00 1112222222222223332 4555666777888888888888754
No 143
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=98.82 E-value=6.4e-08 Score=105.91 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=82.9
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccCCCc--cE-EEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIGPAG--IT-VVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lGP~G--lg-~liv 340 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+++.+...-.++ ..|+++.|.+|++|.+| +| +++.
T Consensus 147 i~~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~ 226 (398)
T PRK07504 147 VRPNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLS 226 (398)
T ss_pred cCcCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccCCchhhCCCEEEeeccccccCCccceEEEEEe
Confidence 56789999999999999999996 4567899999999998665432221 12499999999997544 55 5555
Q ss_pred chhHHhh-hCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 341 REDLLEY-ALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 341 r~~ll~~-~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
+++.+.+ +. ++... .+ .+++-+..+.+...|+- ++.+.++..+.+..+.+.|++.+++
T Consensus 227 ~~~~i~~~~~-------~~~~~--~g---~~~s~~~A~~~l~~L~t------l~~R~~~~~~na~~la~~L~~~p~v 285 (398)
T PRK07504 227 DKAWIEEHLQ-------DYFRH--TG---PSLSPFNAWTLLKGLET------LPVRVRQQTESAAAIADFLAGHPKV 285 (398)
T ss_pred CcHHHHHHHH-------HHHHH--hC---CCCCHHHHHHHHhccch------HHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 5655542 11 01000 01 12333333332233332 4556666778888899999987754
No 144
>PRK07550 hypothetical protein; Provisional
Probab=98.82 E-value=1.2e-06 Score=94.76 Aligned_cols=131 Identities=11% Similarity=0.113 Sum_probs=84.7
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC----CCcccc---cccc---eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL----SRKFDV---SKFG---VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G----~~pIDv---~~~g---vl~asaqK~lG 331 (621)
+++++++|.+++-.+.||...+. +++++++++|+|.+-+-. ..+... ...+ +.+.|..|.+|
T Consensus 160 ~~~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 239 (386)
T PRK07550 160 ITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYA 239 (386)
T ss_pred hcccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhcc
Confidence 34578888888888899998873 345789999999975321 112211 1122 67899999999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|+++.++++++++.... .....+++.....++..+++-+.+. ++...++.+++.+.+++.
T Consensus 240 ~~G~RiG~i~~~~~~~~~~~~~~------------~~~~~~~s~~~q~~~~~~l~~~~~~--~~~~~~~~~~~~~~l~~~ 305 (386)
T PRK07550 240 LTGHRVGAVVASPARIAEIEKFM------------DTVAICAPRIGQIAVAWGLPNLADW--RAGNRAEIARRRDAFRAV 305 (386)
T ss_pred CcccceEeeecCHHHHHHHHHHH------------hhcccCCCcHHHHHHHHHhccHHHH--HHHHHHHHHHHHHHHHHH
Confidence 777 899999988876653210 0112234445555555565543332 455666777777888888
Q ss_pred HHccC
Q psy8733 410 IDNSD 414 (621)
Q Consensus 410 L~~~~ 414 (621)
|+..+
T Consensus 306 L~~~~ 310 (386)
T PRK07550 306 FARLP 310 (386)
T ss_pred HHhCC
Confidence 87754
No 145
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=98.81 E-value=1.1e-07 Score=103.71 Aligned_cols=129 Identities=10% Similarity=0.037 Sum_probs=85.5
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEecccccc-CCCc--cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNI-GPAG--ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~l-GP~G--lg~liv 340 (621)
+++++++|++++-.|++|...|+ +++++|+++|+|.+...+....+++ ..|+++.|.+|++ |+.| .|+++.
T Consensus 134 l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~ 213 (386)
T PRK08045 134 LAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIA 213 (386)
T ss_pred cccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCchhhCCCEEEeecceeccCCCCceeEEEEe
Confidence 45689999999999999999986 4567899999999987765433332 1259999999999 5877 566666
Q ss_pred c-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 341 R-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 341 r-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
+ +++.+++.. +.. ....+++.+..+.+..+|+ -++.+.+++.+.+..|.+.|++.+.+
T Consensus 214 ~~~~~~~~l~~-------~~~-----~~g~~~~p~~~~l~~rgl~------tl~~R~~~~~~na~~la~~L~~~p~v 272 (386)
T PRK08045 214 KDPDVVTELAW-------WAN-----NIGVTGGAFDSYLLLRGLR------TLVPRMELAQRNAQAIVKYLQTQPLV 272 (386)
T ss_pred CcHHHHHHHHH-------HHH-----hcCCCCCHHHHHHHHhhhc------cHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 4 555444310 000 1112233333333333333 25666777888888888999987743
No 146
>PRK09028 cystathionine beta-lyase; Provisional
Probab=98.81 E-value=1e-07 Score=104.32 Aligned_cols=126 Identities=14% Similarity=0.118 Sum_probs=85.8
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccC--CCcccccccc--eEEecccccc-CCCc--cEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFL--SRKFDVSKFG--VIIAGAQKNI-GPAG--ITV 337 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G--~~pIDv~~~g--vl~asaqK~l-GP~G--lg~ 337 (621)
+++++++|++.+..|.+|...|+ +++++|++++||.+++.+ ..|+ ++| +++.|++||+ |+.. .|+
T Consensus 143 l~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~~Pl---~~GaDivv~S~tK~l~Gh~d~~~G~ 219 (394)
T PRK09028 143 IRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINSRPF---EMGVDISIQAATKYIVGHSDVMLGT 219 (394)
T ss_pred cCcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccccCCcc---ccCceEEEEeCCeEecCCCCEEEEE
Confidence 56789999999999999999886 456899999999999887 3444 455 9999999999 5643 345
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
++.+++.++++.. +.. ..-.+++.+..+.+...|+ -+.-+.+++.+.+..+-+.|++.+.+
T Consensus 220 ~~~~~~~~~~l~~-------~~~-----~~G~~~~p~~a~l~~rgl~------TL~lR~~~~~~na~~la~~L~~~p~v 280 (394)
T PRK09028 220 ATANEKHWDQLRE-------HSY-----LMGQCTSPDDVYLAMRGLR------TLGVRLAQHEKNALKVANWLATRPEV 280 (394)
T ss_pred EECCHHHHHHHHH-------HHH-----hcCCCCCHHHHHHHHcccC------cHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5666666654421 000 0112333333332222222 36677788888889999999988743
No 147
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=98.81 E-value=1.2e-07 Score=103.78 Aligned_cols=129 Identities=14% Similarity=0.079 Sum_probs=84.0
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccCCCc--c-EEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIGPAG--I-TVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lGP~G--l-g~liv 340 (621)
+++++++|++++-.+.+|...|+ +++++|+++|+|.+++.+...-.+. ..|+++.|.+|++|+.| + |+++.
T Consensus 146 i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~ 225 (398)
T PRK08249 146 IAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCG 225 (398)
T ss_pred cCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCCchhhCCCEEeccCceecCCCCCceEEEEEC
Confidence 56789999998888999999996 4568999999999988654321222 23488899999998654 3 66666
Q ss_pred chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 341 REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 341 r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
++++++++.. +.. ..-.+++.+..+.+...++. ++.+.+++.+.+..+.+.|++.+.+
T Consensus 226 ~~~l~~~l~~-------~~~-----~~g~~~s~~~a~l~l~~l~t------L~~R~~~~~~na~~la~~L~~~p~v 283 (398)
T PRK08249 226 SKELMEQVYH-------YRE-----INGATMDPMSAYLILRGMKT------LKLRVRQQQESAMALAKYLQTHPKV 283 (398)
T ss_pred CHHHHHHHHH-------HHH-----hcCCCCCHHHHHHHHhCcch------HHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 7777665532 110 01123333333333333333 3445566677888888899887743
No 148
>PRK06767 methionine gamma-lyase; Provisional
Probab=98.81 E-value=8.3e-08 Score=104.53 Aligned_cols=131 Identities=12% Similarity=0.114 Sum_probs=87.4
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccCCCc---cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIGPAG---ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lGP~G---lg~liv 340 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+.+.+....+++ ..|+++.|.+|++|.+| .|+++.
T Consensus 143 i~~~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~ 222 (386)
T PRK06767 143 IRPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTIC 222 (386)
T ss_pred hCcCceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCcEEEecCcceecCCCCceeEEEEe
Confidence 45689999999999999999986 4567899999999988554433332 23589999999997555 588999
Q ss_pred chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 341 REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 341 r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
+++.++++.... .. ...+..+.+..+. ++.-+ .-++.+.++.++.+..+.+.|++.+++.
T Consensus 223 ~~~~i~~~~~~~------~~-----~~g~~~~~~~a~l---~~~~L---~tl~~r~~~~~~~a~~la~~L~~~p~v~ 282 (386)
T PRK06767 223 KTRALAEKIRPM------RK-----DIGGIMAPFDAWL---LLRGL---KTLAVRMDRHCDNAEKIVSFLKNHDAVE 282 (386)
T ss_pred ChHHHHHHHHHH------HH-----HhCCCCCHHHHHH---HHcCC---CcHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 988876542100 00 0011112122222 12212 1355667778889999999999988654
No 149
>PRK07503 methionine gamma-lyase; Provisional
Probab=98.81 E-value=1.2e-07 Score=103.87 Aligned_cols=131 Identities=12% Similarity=0.079 Sum_probs=84.7
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccCCCc---cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIGPAG---ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lGP~G---lg~liv 340 (621)
+++++++|++++-.+.+|...|+ +++++|+++|+|.+++.+.....+. ..|+++.|.+|++|++| .|+++.
T Consensus 147 i~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~ 226 (403)
T PRK07503 147 ISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAGLVVG 226 (403)
T ss_pred cCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEccccccccCCCceeEEEEEc
Confidence 45689999999888999999986 4568899999999998654332332 12489999999998766 688888
Q ss_pred chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 341 REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 341 r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
++++++++... .+.. ..-..++....+. ++..++. ++.+.+++.+.+..+.+.|++.+.+
T Consensus 227 ~~~l~~~l~~~-----~~~~-----~~g~~~s~~~a~l---~l~~L~t---l~~r~~~~~~na~~~a~~L~~~p~v 286 (403)
T PRK07503 227 GKALADRIRLE-----GLKD-----MTGAVMSPFDAFL---LMRGLKT---LALRMDRHCASAQAVAEWLARHPAV 286 (403)
T ss_pred CHHHHHHHHhh-----hHHh-----CcCCCCCHHHHHH---HHcCcch---HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 88887766321 0000 0012222222222 2222221 4455566667888888888887643
No 150
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=98.80 E-value=1.6e-07 Score=103.14 Aligned_cols=128 Identities=9% Similarity=0.007 Sum_probs=85.4
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC--CcccccccceEEeccccccC-CCc--cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS--RKFDVSKFGVIIAGAQKNIG-PAG--ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~--~pIDv~~~gvl~asaqK~lG-P~G--lg~li 339 (621)
+++++++|++++-.|.+|...|+ +++++|+++|+|.+.+.+. .|+++ ..|+++.|++|+++ |.| .|.++
T Consensus 142 i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~pl~~-gaDivv~S~tK~l~g~~~~~~G~vv 220 (405)
T PRK08776 142 LAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKPLEF-GADLVLHSTTKYINGHSDVVGGAVV 220 (405)
T ss_pred cCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCCcccc-cCCEEEecCceeecCCCCceEEEEE
Confidence 45689999999999999999885 3567899999999987665 34432 12499999999996 665 46666
Q ss_pred Ec-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 340 VR-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 340 vr-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
.+ +++.+++.. +.. . .-.+++.+..+.+...++|+. .+.++..+.+..+.+.|++.+.+
T Consensus 221 ~~~~~l~~~l~~-------~~~---~--~g~~~s~~~a~l~~~gl~tl~------~r~~~~~~na~~la~~L~~~p~v 280 (405)
T PRK08776 221 ARDAELHQQLVW-------WAN---A--LGLTGSPFDAFLTLRGLRTLD------ARLRVHQENADAIAALLDGHAAV 280 (405)
T ss_pred eCCHHHHHHHHH-------HHH---h--cCCCCCHHHHHHHHhhhCcHH------HHHHHHHHHHHHHHHHHHcCCCe
Confidence 64 444444321 010 0 111345555555556666653 45566677778888888887743
No 151
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=98.80 E-value=1.1e-07 Score=104.36 Aligned_cols=128 Identities=9% Similarity=0.065 Sum_probs=86.3
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC--cccccccceEEeccccccCCCc---cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR--KFDVSKFGVIIAGAQKNIGPAG---ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~--pIDv~~~gvl~asaqK~lGP~G---lg~li 339 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+.+.+.. |+++. .|+++.|++|++|..| .|+++
T Consensus 152 i~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~~~~g-aDivv~S~tK~l~g~g~~~gG~v~ 230 (403)
T PRK07810 152 LSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLG-ADVVVYSGTKHIDGQGRVLGGAIL 230 (403)
T ss_pred cCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCChhhcC-CcEEEccCCceecCCcCceeEEEE
Confidence 56789999999999999999886 45688999999999987654 54432 3699999999998666 48888
Q ss_pred EchhHHhh-hCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 340 VREDLLEY-ALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 340 vr~~ll~~-~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
.+++.+.. +.. + .. ..-.+++.+..+.+...|+- ++.+.++..+.+..+.+.|++.+++
T Consensus 231 ~~~~~~~~~l~~----~---~~-----~~g~~~s~~~a~l~l~~L~t------l~~R~~~~~~~a~~~a~~L~~~p~v 290 (403)
T PRK07810 231 GDREYIDGPVQK----L---MR-----HTGPALSAFNAWVLLKGLET------LALRVRHSNASALRIAEFLEGHPAV 290 (403)
T ss_pred eChHHHHHHHHH----H---HH-----HhCCCCCHHHHHHHHhccCc------HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 88776642 210 0 00 01113333333333333332 5566677777788888888887754
No 152
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=98.80 E-value=6.8e-07 Score=97.01 Aligned_cols=126 Identities=15% Similarity=0.250 Sum_probs=83.5
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEecccccCC---Cccccccc----ceEEeccccccCC-Ccc
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSNFLS---RKFDVSKF----GVIIAGAQKNIGP-AGI 335 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs~G~---~pIDv~~~----gvl~asaqK~lGP-~Gl 335 (621)
++++|.+.++.+.+|...| + +++++|+++++|-+++-.. .....+.+ +++.+| |++|. -.+
T Consensus 191 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~~t~s--K~l~~g~~~ 268 (413)
T cd00610 191 EVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLG--KGLGGGLPL 268 (413)
T ss_pred CEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCeEEEc--ccccCcccc
Confidence 5788888888888898776 2 3567999999999976331 12222223 355555 99963 348
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
|.++.++++.+.+. ..+ .....++.. +.....+..++|+++.+. .+.++.+++.+++++.|+++.
T Consensus 269 g~~~~~~~~~~~~~-~~~--------~~~~~t~~~-~~~~~~a~~a~l~~l~~~----~~~~~~~~~~~~l~~~l~~~~ 333 (413)
T cd00610 269 GAVLGREEIMDAFP-AGP--------GLHGGTFGG-NPLACAAALAVLEVLEEE----GLLENAAELGEYLRERLRELA 333 (413)
T ss_pred EEEEEcHHHHHhhc-cCC--------CCCCCCCCc-CHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887641 000 011223333 344567788889988763 456778888888888888753
No 153
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=98.80 E-value=1e-07 Score=103.04 Aligned_cols=128 Identities=14% Similarity=0.163 Sum_probs=86.7
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC--cccccccceEEeccccccCCCc---cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR--KFDVSKFGVIIAGAQKNIGPAG---ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~--pIDv~~~gvl~asaqK~lGP~G---lg~li 339 (621)
+++++++|++.+..+.+|...|+ +++++|+++++|.+.+.+.. |++. ..|+++.|.+|++|.+| .|+++
T Consensus 122 i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~~~~~~-g~Divv~S~tK~l~g~~~~~gG~v~ 200 (369)
T cd00614 122 IKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRPLEL-GADIVVHSATKYIGGHSDVIAGVVV 200 (369)
T ss_pred cCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcCChhhh-CCcEEEeccceeccCCCCceEEEEE
Confidence 45579999999989999999986 45689999999999877653 3332 23599999999997555 68888
Q ss_pred Ech-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 340 VRE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 340 vr~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
.++ ++++++.... . ..-.+++....+.+ ++-++ .++.+.+++.+.+.++.+.|++.+++
T Consensus 201 ~~~~~l~~~l~~~~-------~-----~~g~~~~p~~a~~~---l~~l~---tl~~r~~~~~~na~~la~~L~~~~~v 260 (369)
T cd00614 201 GSGEALIQRLRFLR-------L-----ALGTILSPFDAWLL---LRGLK---TLPLRMERHSENALKVAEFLEKHPKV 260 (369)
T ss_pred eCcHHHHHHHHHHH-------H-----hhCCCCCHHHHHHH---HcCCC---CHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 877 7766553210 0 01112222332322 22221 35667778888899999999988754
No 154
>PRK05968 hypothetical protein; Provisional
Probab=98.79 E-value=1.2e-07 Score=103.48 Aligned_cols=127 Identities=13% Similarity=0.111 Sum_probs=80.5
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC--CcccccccceEEeccccccC-CCc--cEEEEEc
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS--RKFDVSKFGVIIAGAQKNIG-PAG--ITVVIVR 341 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~--~pIDv~~~gvl~asaqK~lG-P~G--lg~livr 341 (621)
+++++|++++..+.++...|+ +++++|+++|+|.+.+.+. .|++. ..|+++.|.+|+++ |.| .|+++.+
T Consensus 146 ~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p~~~-g~Divv~S~tK~l~g~~~~~gG~i~~~ 224 (389)
T PRK05968 146 PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPITL-GVDLVIHSASKYLGGHSDTVAGVVAGS 224 (389)
T ss_pred ccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccCchhc-CCcEEEeeccccccCCCCeEEEEEEEC
Confidence 468888886544444444554 3467899999999987774 35443 23588899999996 654 6888889
Q ss_pred hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 342 EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 342 ~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
+++++++......++ + .+.+-+..+.+ +..++ .++.+.+++.+.+..+.+.|++.+++
T Consensus 225 ~~~~~~l~~~~~~~~--------g---~~~~~~~A~~~---l~~L~---tl~~r~~~~~~~a~~la~~L~~~p~v 282 (389)
T PRK05968 225 KEHIARINAEAYPYL--------G---AKLSPFEAWLL---LRGLR---TLPLRMKAHEASALEIARRLKAHPVV 282 (389)
T ss_pred HHHHHHHHHHHHHhC--------C---CCCChHHHHHH---HcccC---cHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 988876642111011 1 11111222222 33332 46677777778899999999988754
No 155
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.79 E-value=9.2e-08 Score=105.97 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=59.0
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccCCCc--cEEEEEc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIGPAG--ITVVIVR 341 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lGP~G--lg~livr 341 (621)
+++++++|++.+..+.+|...|+ +++++|+++|||++++.+...-.++ ..|+++.|+||++|+.| +|.+++.
T Consensus 152 i~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~ 231 (436)
T PRK07812 152 VRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVD 231 (436)
T ss_pred CCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEEecccccCCCCCeEEEEEEc
Confidence 56789999999999999999997 4568999999999998765544442 13499999999998666 7777775
Q ss_pred hh
Q psy8733 342 ED 343 (621)
Q Consensus 342 ~~ 343 (621)
.+
T Consensus 232 ~~ 233 (436)
T PRK07812 232 GG 233 (436)
T ss_pred CC
Confidence 43
No 156
>PRK09265 aminotransferase AlaT; Validated
Probab=98.76 E-value=2.4e-06 Score=93.26 Aligned_cols=72 Identities=11% Similarity=0.238 Sum_probs=48.9
Q ss_pred CCCCceEEEEeccccccccccc---c-----ccccCCCcEEEecccccC---C-Ccccc---c-ccceEE-eccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFN---Y-----IPDSQGIPLVSDMSSNFL---S-RKFDV---S-KFGVII-AGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p---~-----i~~~~g~llvvDavSs~G---~-~pIDv---~-~~gvl~-asaqK~lGP 332 (621)
+++++++|.+++-.|.||...+ + +++++|+++|+|-+-.-. . ....+ . +..+++ .|-=|.+|.
T Consensus 165 ~~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~ 244 (404)
T PRK09265 165 ITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRV 244 (404)
T ss_pred ccccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccC
Confidence 4567899999999999999988 2 346789999999764211 1 11111 1 122444 555799998
Q ss_pred Cc--cEEEEEc
Q psy8733 333 AG--ITVVIVR 341 (621)
Q Consensus 333 ~G--lg~livr 341 (621)
+| +|+++.+
T Consensus 245 pGlRiG~~v~~ 255 (404)
T PRK09265 245 AGFRVGWMVLS 255 (404)
T ss_pred cccceEEEEEe
Confidence 88 5888863
No 157
>PRK05942 aspartate aminotransferase; Provisional
Probab=98.75 E-value=1.8e-06 Score=93.94 Aligned_cols=130 Identities=13% Similarity=0.136 Sum_probs=87.2
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----Ccc---ccc---ccceEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKF---DVS---KFGVIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pI---Dv~---~~gvl~asaqK~lG 331 (621)
+++++++|++++-.|.||...+. +++++++++|+|-+-.... .+. +++ +..+.+.|--|.+|
T Consensus 167 ~~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~ 246 (394)
T PRK05942 167 VAQQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYN 246 (394)
T ss_pred ccccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccC
Confidence 45689999999889999999883 3467899999998743211 111 122 22355677779999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|+++.++++.+++..... ....+++.....++..+|++..+ .++.+.++.+++.+.+++.
T Consensus 247 ~~GlRiG~i~~~~~l~~~l~~~~~------------~~~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~ 312 (394)
T PRK05942 247 MAGWRVGFVVGNRHIIQGLRTLKT------------NLDYGIFSALQKAAETALQLPDS--YLQQVQERYRTRRDFLIQG 312 (394)
T ss_pred ChhhheeeeecCHHHHHHHHHHHh------------hcccCCCHHHHHHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHH
Confidence 888 8999999998876642110 11112333445566666665433 4677788888888888888
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|+..
T Consensus 313 L~~~ 316 (394)
T PRK05942 313 LGEL 316 (394)
T ss_pred HHHC
Confidence 8775
No 158
>PRK08361 aspartate aminotransferase; Provisional
Probab=98.75 E-value=2.6e-07 Score=100.26 Aligned_cols=133 Identities=12% Similarity=0.234 Sum_probs=86.6
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC----CCccccccc----ceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL----SRKFDVSKF----GVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G----~~pIDv~~~----gvl~asaqK~lGP~ 333 (621)
+++++++|.+++..|+||...|. +++++++++|+|.+-+-. .....+..+ .+++.|..|.+|.+
T Consensus 163 i~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~ 242 (391)
T PRK08361 163 ITKRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMT 242 (391)
T ss_pred cccccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCc
Confidence 45678999999999999999982 245789999999775422 111222111 27789999999988
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQ---GGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~---gGl~~i~~r~~~la~~L~e 408 (621)
| +|+++.++++++++....+ ....++ +.....++ ..++.+. ..++.+.++.+++.+.+++
T Consensus 243 GlRiG~~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~q~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (391)
T PRK08361 243 GWRLGFVIAPEQVIKDMIKLHA-----------YIIGNV-ASFVQIAG---IEALRSKESWKAVEEMRKEYNERRKLVLK 307 (391)
T ss_pred HhhhhhhccCHHHHHHHHHHHh-----------hhccCC-ChHHHHHH---HHHhcCCcccHHHHHHHHHHHHHHHHHHH
Confidence 9 8999999888765432100 011122 22232332 3333321 1367888888888899999
Q ss_pred HHHccCCcc
Q psy8733 409 EIDNSDKFY 417 (621)
Q Consensus 409 ~L~~~~g~~ 417 (621)
.|++++|+.
T Consensus 308 ~L~~~~~~~ 316 (391)
T PRK08361 308 RLKEMPHIK 316 (391)
T ss_pred HHHhCCCCe
Confidence 998876543
No 159
>PRK03321 putative aminotransferase; Provisional
Probab=98.75 E-value=1.2e-06 Score=93.35 Aligned_cols=80 Identities=13% Similarity=0.203 Sum_probs=57.4
Q ss_pred CCCCceEEEEecccccccccccc-----ccc--cCCCcEEEecccccCC---Cc---ccc-cccc--eEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPD--SQGIPLVSDMSSNFLS---RK---FDV-SKFG--VIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~--~~g~llvvDavSs~G~---~p---IDv-~~~g--vl~asaqK~lGP~ 333 (621)
+++++++|++++..+.||...|. +++ .+++++|+|.+-.-.. .+ +.. +..+ +++.|-=|.+|.+
T Consensus 142 ~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 221 (352)
T PRK03321 142 ITDRTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLA 221 (352)
T ss_pred hccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhH
Confidence 34678999999999999999985 333 3589999999764221 11 111 1223 5566778999988
Q ss_pred c--cEEEEEchhHHhhhC
Q psy8733 334 G--ITVVIVREDLLEYAL 349 (621)
Q Consensus 334 G--lg~livr~~ll~~~~ 349 (621)
| +|+++.++++.+.+.
T Consensus 222 GlRiG~~v~~~~~~~~~~ 239 (352)
T PRK03321 222 GLRVGYAVGHPEVIAALR 239 (352)
T ss_pred HHhhhhhcCCHHHHHHHH
Confidence 8 899999998887653
No 160
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=98.75 E-value=1.9e-07 Score=102.07 Aligned_cols=131 Identities=14% Similarity=0.141 Sum_probs=85.8
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccc-cceEEeccccccCCCc---cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSK-FGVIIAGAQKNIGPAG---ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~-~gvl~asaqK~lGP~G---lg~liv 340 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+.+.+...-.++. .|+++.|.+|++|.+| .|+++.
T Consensus 141 i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~ 220 (391)
T TIGR01328 141 IKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICG 220 (391)
T ss_pred hccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCCchhcCCCEEEccccccccCCCCceEEEEEc
Confidence 45789999999999999999886 45688999999999987654333332 2489999999997555 578888
Q ss_pred chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 341 REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 341 r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
++++++++..... .. . .+ ++++-...+. +++-++ -++.+.++..+.+..+.+.|++.+++
T Consensus 221 ~~~li~~l~~~~~-----~~-~-~g---~~l~~~~a~l---~l~~L~---tl~~r~~~~~~na~~la~~L~~~p~v 280 (391)
T TIGR01328 221 KAELLQQIRMVGI-----KD-M-TG---SVISPFDAWL---ILRGLK---TLNIRMKRHSENAMKVAEYLKSHPAV 280 (391)
T ss_pred CHHHHHHHHHHHH-----Hh-C-CC---CCCCcHHHHH---HHhCcC---cHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 8888776532100 00 0 01 1222222121 122221 24566677788888999999988754
No 161
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=98.74 E-value=1.9e-06 Score=92.81 Aligned_cols=122 Identities=13% Similarity=0.171 Sum_probs=77.2
Q ss_pred CCceEEEEeccccccccccc---c-----ccccCCCcEEEecccccCCCcc----ccccc--ceEEecccccc-CCCccE
Q psy8733 272 PEASYLYYCDNETVDGVEFN---Y-----IPDSQGIPLVSDMSSNFLSRKF----DVSKF--GVIIAGAQKNI-GPAGIT 336 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p---~-----i~~~~g~llvvDavSs~G~~pI----Dv~~~--gvl~asaqK~l-GP~Glg 336 (621)
+++++|.++.. +.+|...+ + +++++++++++|-+.+.|.... ...++ ++++.|..|++ |+. .|
T Consensus 135 ~~~~lIiitg~-s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKalaG~r-~G 212 (346)
T TIGR03576 135 DGTSLVVITGS-TMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMDGPR-GG 212 (346)
T ss_pred cCceEEEEECC-CCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhccccc-eE
Confidence 45788887654 55677643 2 2356899999999988764221 11222 48888999988 777 49
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
+++.++++++.+...... ..+ |.|.+..++..++|+.+ ..+.+.++.+++.+.+++.++
T Consensus 213 ~v~~~~~li~~l~~~~~~-----------~~~-s~~~~~~~aa~~aL~~~----~~~~~~~~l~~r~~~~~~~l~ 271 (346)
T TIGR03576 213 LLAGRKELVDKIKSVGEQ-----------FGL-EAQAPLLAAVVRALEEF----ELSRIRDAFKRKEEVYLRLFD 271 (346)
T ss_pred EEEeCHHHHHHHHHhhcC-----------ccc-CccHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHHHHH
Confidence 999999998766432111 112 34444666666677543 234556666677666666665
No 162
>PRK08363 alanine aminotransferase; Validated
Probab=98.74 E-value=1.6e-06 Score=94.37 Aligned_cols=136 Identities=12% Similarity=0.138 Sum_probs=80.4
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Cc---ccccccc--eEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RK---FDVSKFG--VIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~p---IDv~~~g--vl~asaqK~lGP~ 333 (621)
+++++++|++++..|.||...+. +++++++++|+|.+-+... .+ ..+...+ +++.|--|.++.+
T Consensus 163 ~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~ 242 (398)
T PRK08363 163 ITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFAT 242 (398)
T ss_pred CCcceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCc
Confidence 45678999999999999998872 3457899999999754221 11 1122222 6678999998766
Q ss_pred c--cEEEEE--chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIV--REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 334 G--lg~liv--r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
| +|++++ ++++++.+......+ . ...+ +++...-.++..+|+...+ -++++.++.+++.+++++.
T Consensus 243 GlRiG~~~~~~~~~~~~~l~~~~~~~------~--~~~~-~~s~~~q~~~~~~l~~~~~--~l~~~~~~~~~~~~~l~~~ 311 (398)
T PRK08363 243 GWRLGYIYFVDPEGKLAEVREAIDKL------A--RIRL-CPNTPAQFAAIAGLTGPMD--YLEEYMKKLKERRDYIYKR 311 (398)
T ss_pred cceEEEEEEeCcHHHHHHHHHHHHHH------h--cccc-cCChHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHHHHH
Confidence 6 788888 555555432211100 0 0011 2333344444444432111 2455566777777888888
Q ss_pred HHccCCc
Q psy8733 410 IDNSDKF 416 (621)
Q Consensus 410 L~~~~g~ 416 (621)
|++++|+
T Consensus 312 L~~~~~~ 318 (398)
T PRK08363 312 LNEIPGI 318 (398)
T ss_pred HhcCCCC
Confidence 8776543
No 163
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=98.73 E-value=2.1e-07 Score=101.72 Aligned_cols=127 Identities=9% Similarity=-0.002 Sum_probs=83.0
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccC--CCcccccccceEEeccccccC-CCc--cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFL--SRKFDVSKFGVIIAGAQKNIG-PAG--ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G--~~pIDv~~~gvl~asaqK~lG-P~G--lg~li 339 (621)
+++++++|++++..+.+|...|+ +++++|+++++|.+...+ ..|+++ ..|+++.|+||+++ |.+ .|+++
T Consensus 135 i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl~~-GaDivv~S~tK~l~G~~d~~gG~i~ 213 (388)
T PRK08861 135 LAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPLEL-GADFVIHSTTKYINGHSDVIGGVLI 213 (388)
T ss_pred cCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccCCCccc-CCCEEEeecceeccCCCcceeEEEE
Confidence 55689999999999999999996 456789999999998765 455554 24599999999995 776 35555
Q ss_pred Ech-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 340 VRE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 340 vr~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
.++ ++.+++.. +.. ..-.+++.+..+.+... ..-+.-+.+++.+.+..+-+.|++.|.
T Consensus 214 ~~~~~~~~~~~~-------~~~-----~~G~~~~p~~a~l~~rg------l~Tl~lR~~~~~~~a~~~a~~L~~~p~ 272 (388)
T PRK08861 214 TKTKEHAEELAW-------WGN-----CIGATGTPFDSYMTLRG------IRTLGARMRVHEESAQQILAYLQTQSL 272 (388)
T ss_pred ecHHHHHHHHHH-------HHh-----ccCCCCChHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 544 34443311 000 11122222322211111 113667778888888889999998774
No 164
>PRK07777 aminotransferase; Validated
Probab=98.73 E-value=8.4e-07 Score=96.05 Aligned_cols=131 Identities=13% Similarity=0.116 Sum_probs=82.0
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC------Cccc-ccc-cc--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS------RKFD-VSK-FG--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~------~pID-v~~-~g--vl~asaqK~lG 331 (621)
+++++++|++++..+.||...+. +++++++++|+|-+.+... .++. +.. .+ +++.|..|.+|
T Consensus 156 ~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 235 (387)
T PRK07777 156 VTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFN 235 (387)
T ss_pred cCcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhcc
Confidence 34678999999888889998762 3457899999998765321 1222 122 22 78899999999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|+++.++++++++..... +. ....++| ...++..+++.-.+ =++.+.++.+++.+.+++.
T Consensus 236 ~~GlRiG~~~~~~~l~~~~~~~~~-~~--------~~~~~~~---~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~ 301 (387)
T PRK07777 236 VTGWKIGWACGPAPLIAAVRAAKQ-YL--------TYVGGAP---FQPAVAHALDHEDA--WVAALRDSLQAKRDRLAAG 301 (387)
T ss_pred CcCceeEEEecCHHHHHHHHHHHh-hc--------ccCCCCH---HHHHHHHHHhCCcH--HHHHHHHHHHHHHHHHHHH
Confidence 779 6999999888776532110 00 0011222 22333333322111 1456677788888899999
Q ss_pred HHccC
Q psy8733 410 IDNSD 414 (621)
Q Consensus 410 L~~~~ 414 (621)
|++.+
T Consensus 302 L~~~~ 306 (387)
T PRK07777 302 LAEAG 306 (387)
T ss_pred HHhCC
Confidence 98863
No 165
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=98.73 E-value=8.6e-07 Score=95.82 Aligned_cols=130 Identities=8% Similarity=0.042 Sum_probs=84.5
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC----CCcccc---cc-cc--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL----SRKFDV---SK-FG--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G----~~pIDv---~~-~g--vl~asaqK~lG 331 (621)
+.+++++|++++-.|.||...+. +++++++++|+|-+..-. ..+..+ +. .+ +.+.|-=|.+|
T Consensus 163 ~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 242 (385)
T PRK09276 163 VAKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYN 242 (385)
T ss_pred ccccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcC
Confidence 34678999999888999999983 245789999999987632 122222 22 12 55677779999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|+++.++++.+++..... ....+++.+...++..+++...+ -++.+.++.+++.+.+.+.
T Consensus 243 ~~GlRiG~~i~~~~l~~~~~~~~~------------~~~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~ 308 (385)
T PRK09276 243 MTGWRIGFAVGNADLIAGLGKVKS------------NVDSGVFQAIQEAGIAALNGPQE--VVEELRKIYQERRDILVEG 308 (385)
T ss_pred CcchhheeeeCCHHHHHHHHHHHh------------hccCCCCHHHHHHHHHHHcCcHH--HHHHHHHHHHHHHHHHHHH
Confidence 999 9999999998876532110 01112223333444444432111 2566777778888889999
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|++.
T Consensus 309 L~~~ 312 (385)
T PRK09276 309 LRKL 312 (385)
T ss_pred HHhC
Confidence 9886
No 166
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=98.72 E-value=4.6e-06 Score=91.33 Aligned_cols=263 Identities=14% Similarity=0.168 Sum_probs=160.8
Q ss_pred CCceeccCCCC--CCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhC--CCCCCEEEEEcCCcc
Q psy8733 50 HPVINFGAGPA--KLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLN--VPNNYKILFLQGGGT 125 (621)
Q Consensus 50 ~~~~lf~aGPs--~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~--~p~~yeI~f~~gggT 125 (621)
..++.++-|-- +.|+.+.+++.+.+.+-.. .. -..++ ..++-+.+.+.+.+..| ...+.+|+.+ .|++
T Consensus 28 ~~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~-~Y----~~~~G--~~~LReaia~~~~~~~~~~~~~~~eiivt-~Ga~ 99 (393)
T COG0436 28 EDVIDLSIGEPDFPTPEHIIEAAIEALEEGGT-HY----TPSAG--IPELREAIAEKYKRRYGLDVDPEEEIIVT-AGAK 99 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHhcccC-CC----CCCCC--CHHHHHHHHHHHHHHhCCCCCCCCeEEEe-CCHH
Confidence 35888888865 7899999999998754211 00 01111 12333344455555555 3333368876 6688
Q ss_pred hhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccc
Q psy8733 126 GMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 126 ~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
+ ++. .++.-++.+||++++..+++.... ...+-.|...+..+.
T Consensus 100 ~-----al~--------------------------~~~~a~~~pGDeVlip~P~Y~~y~--~~~~~~gg~~v~v~l---- 142 (393)
T COG0436 100 E-----ALF--------------------------LAFLALLNPGDEVLIPDPGYPSYE--AAVKLAGGKPVPVPL---- 142 (393)
T ss_pred H-----HHH--------------------------HHHHHhcCCCCEEEEeCCCCcCHH--HHHHhcCCEEEEEeC----
Confidence 8 332 234556678888777777665542 234445554332221
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCcccc--CCCCCceEEEEeccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW--NRDPEASYLYYCDNE 283 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l--~i~~~t~~V~~thnE 283 (621)
.... .+ | .++.+.+ .++++||+|.++.=.
T Consensus 143 -----~~~~-~~-----------------f--------------------------~~d~~~l~~~i~~ktk~i~ln~P~ 173 (393)
T COG0436 143 -----DEEE-NG-----------------F--------------------------KPDLEDLEAAITPKTKAIILNSPN 173 (393)
T ss_pred -----CcCc-cC-----------------C--------------------------cCCHHHHHhhcCccceEEEEeCCC
Confidence 0000 01 1 1222222 367799999999999
Q ss_pred ccccccccc--------ccccCCCcEEEeccccc-------CCCcccccc-cc--eEEeccccccCCCc--cEEEEEc-h
Q psy8733 284 TVDGVEFNY--------IPDSQGIPLVSDMSSNF-------LSRKFDVSK-FG--VIIAGAQKNIGPAG--ITVVIVR-E 342 (621)
Q Consensus 284 T~tGv~~p~--------i~~~~g~llvvDavSs~-------G~~pIDv~~-~g--vl~asaqK~lGP~G--lg~livr-~ 342 (621)
|.||...+. +++++++++|+|-+=.= .+..+.+.. .+ +.+.|-=|.++-+| +|+++.. +
T Consensus 174 NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~ 253 (393)
T COG0436 174 NPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPE 253 (393)
T ss_pred CCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChH
Confidence 999999883 35689999999975331 112223333 23 77889999999888 8999998 6
Q ss_pred hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 343 DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 343 ~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
++.+.+.. . .......+|++.-++...||+--.+.+-++.+.+..+++.+.+++.|.+++|+..
T Consensus 254 ~l~~~~~~-----------~-~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~ 317 (393)
T COG0436 254 ELIAALRK-----------L-KSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSV 317 (393)
T ss_pred HHHHHHHH-----------H-HHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Confidence 67665421 0 1123345666677777777764321113677778899999999999999886653
No 167
>PRK07683 aminotransferase A; Validated
Probab=98.72 E-value=3.9e-06 Score=91.10 Aligned_cols=129 Identities=12% Similarity=0.146 Sum_probs=81.3
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Cccccccc----c--eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RKFDVSKF----G--VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~pIDv~~~----g--vl~asaqK~lGP 332 (621)
++++++++.+++..|.||...+. +++++++++|+|.+-+-.. .+..+..+ + +++.|--|.+|.
T Consensus 158 ~~~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~ 237 (387)
T PRK07683 158 ITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSM 237 (387)
T ss_pred cCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccC
Confidence 44678999999999999998773 3457899999999866432 22223222 2 778899999997
Q ss_pred Cc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQ-GGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 333 ~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~-gGl~~i~~r~~~la~~L~e~ 409 (621)
+| +|+++.++++.+++.... ......++.....+ +.+++.+. .-++.+.++.++..+.+++.
T Consensus 238 pGlRiG~i~~~~~l~~~~~~~~------------~~~~~~~~~~~q~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 302 (387)
T PRK07683 238 TGWRIGFLFAPSYLAKHILKVH------------QYNVTCASSISQYA---ALEALTAGKDDAKMMRHQYKKRRDYVYNR 302 (387)
T ss_pred ccceeEEEEcCHHHHHHHHHHH------------HhccCCCChHHHHH---HHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 78 899999998877653210 01112222223233 33344320 01445556666777778888
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|++.
T Consensus 303 l~~~ 306 (387)
T PRK07683 303 LISM 306 (387)
T ss_pred HHHc
Confidence 8765
No 168
>PRK06836 aspartate aminotransferase; Provisional
Probab=98.72 E-value=1.7e-06 Score=94.07 Aligned_cols=76 Identities=14% Similarity=0.245 Sum_probs=56.2
Q ss_pred CCCCceEEEEecccccccccccc--------cccc------CCCcEEEecccccCC---Ccc-c-ccccc--eEEecccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDS------QGIPLVSDMSSNFLS---RKF-D-VSKFG--VIIAGAQK 328 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~------~g~llvvDavSs~G~---~pI-D-v~~~g--vl~asaqK 328 (621)
+++++++|++++..|+||..+|. ++++ +++++|+|.+-.-.. .+. . .+.++ +++.|-.|
T Consensus 165 ~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK 244 (394)
T PRK06836 165 ITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSK 244 (394)
T ss_pred cCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchh
Confidence 45689999999999999999884 2344 799999999765221 111 1 22344 78899999
Q ss_pred ccCCCc--cEEEEEchhHH
Q psy8733 329 NIGPAG--ITVVIVREDLL 345 (621)
Q Consensus 329 ~lGP~G--lg~livr~~ll 345 (621)
.+|.+| +|+++.++++.
T Consensus 245 ~~~~pGlRiG~~~~~~~~~ 263 (394)
T PRK06836 245 SLSLPGERIGYIAVNPEME 263 (394)
T ss_pred hccCcceeeEEEecCHHHh
Confidence 999777 89999987763
No 169
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=98.72 E-value=2.5e-06 Score=92.08 Aligned_cols=127 Identities=11% Similarity=0.003 Sum_probs=80.0
Q ss_pred CCCceEEEEecccccccccccc-----ccc--cCCCcEEEecccccCCC---cccccc-c-c-eEEeccccccCCCc--c
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY-----IPD--SQGIPLVSDMSSNFLSR---KFDVSK-F-G-VIIAGAQKNIGPAG--I 335 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~-----i~~--~~g~llvvDavSs~G~~---pIDv~~-~-g-vl~asaqK~lGP~G--l 335 (621)
+++++++++|+-.|+||...+. +.+ .+++++|+|-+-+-... ...+.. . . +++.|-=|.+|.+| +
T Consensus 153 ~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRi 232 (369)
T PRK08153 153 RENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKAYGLAGARV 232 (369)
T ss_pred ccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEEEecchHhccCcchhe
Confidence 3578899999999999999884 222 34889999987442221 112222 2 2 77888899999889 5
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
|.++.++++.+.+.... . ..+++.+..+++.++|+ +..=++.+.++.++..+.+.+.|++.+
T Consensus 233 G~~v~~~~~~~~l~~~~-------------~-~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~~~~~L~~~g 294 (369)
T PRK08153 233 GYAIGAPGTIKAFDKVR-------------N-HFGMNRIAQAAALAALK---DQAYLAEVVGKIAAARDRIAAIARANG 294 (369)
T ss_pred eeeecCHHHHHHHHHhh-------------c-CCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999988876553211 1 12345555565555553 210145556666666677777777653
No 170
>PRK05967 cystathionine beta-lyase; Provisional
Probab=98.70 E-value=2.6e-07 Score=101.09 Aligned_cols=128 Identities=10% Similarity=-0.007 Sum_probs=84.9
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccC--CCcccccccceEEeccccccCCCc---cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFL--SRKFDVSKFGVIIAGAQKNIGPAG---ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G--~~pIDv~~~gvl~asaqK~lGP~G---lg~li 339 (621)
++++|++|++.+..|+++...|+ +++++|+++|||.+++.+ .+|+++ ..|+++.|++|+++..| .|+++
T Consensus 146 l~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~~pl~~-GaDivv~S~tKy~~Gh~d~~~G~v~ 224 (395)
T PRK05967 146 MRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYFRPLDF-GVDISIHAATKYPSGHSDILLGTVS 224 (395)
T ss_pred cCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCceecChhHc-CCCEEEEecccccCCCCCeeEEEEE
Confidence 56789999999999999999886 456889999999998765 455553 12499999999975433 67777
Q ss_pred EchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 340 VREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 340 vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
.++++++++.. +. . ..-.+++.+..+.+...++ -++-+.+++.+.+..|-+.|++.+.+
T Consensus 225 ~~~~~~~~l~~-------~~--~---~~G~~~~p~da~l~~rgl~------Tl~lR~~~~~~na~~lA~~L~~hp~v 283 (395)
T PRK05967 225 ANEKCWPQLLE-------AH--G---TLGLCAGPDDTYQILRGLR------TMGIRLEHHRKSALEIARWLEGRPDV 283 (395)
T ss_pred cCHHHHHHHHH-------HH--H---HcCCCCCHHHHHHHHcCcc------cHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 77777665421 00 0 0112333333222222211 35666777888888888999887743
No 171
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=98.70 E-value=1e-06 Score=94.28 Aligned_cols=128 Identities=17% Similarity=0.271 Sum_probs=80.7
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC--Cccc-ccccc--eEEeccccccCCCc--cEEEE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS--RKFD-VSKFG--VIIAGAQKNIGPAG--ITVVI 339 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~--~pID-v~~~g--vl~asaqK~lGP~G--lg~li 339 (621)
.++++|++++..|.||...+. +++.++.++|+|.+..-.. ...+ ++..+ +++.|--|.+|.+| +|+++
T Consensus 147 ~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v 226 (351)
T PRK14807 147 YQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAV 226 (351)
T ss_pred cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhcccchhceeeee
Confidence 378999999999999999885 3445567899999863211 1112 22334 66777889999888 78888
Q ss_pred EchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 340 VREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 340 vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
.++++.+++.... ..+. ++...-+++ ..++.+ +.+++..++.+++.+.+.+.|.+++|+.
T Consensus 227 ~~~~~~~~~~~~~-------------~~~~-~~~~~q~~~---~~~l~~-~~~~~~~~~~~~~r~~l~~~l~~~~g~~ 286 (351)
T PRK14807 227 ANENILKYLNLVK-------------SPYN-INSLSQVIA---LKVLRT-GVLKERVNYILNERERLIKELSKIPGIK 286 (351)
T ss_pred cCHHHHHHHHHcc-------------CCCC-cCHHHHHHH---HHHHhH-HHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence 8888877653210 1122 223333333 333333 2355555666677777888887766553
No 172
>PRK12566 glycine dehydrogenase; Provisional
Probab=98.70 E-value=1.9e-07 Score=110.36 Aligned_cols=138 Identities=12% Similarity=0.052 Sum_probs=96.7
Q ss_pred CCCceEEEEecccccccccccc--c---cccCCCcEEEecccccCCCccc-ccccc--eEEeccccccC-CCccEEEEEc
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--I---PDSQGIPLVSDMSSNFLSRKFD-VSKFG--VIIAGAQKNIG-PAGITVVIVR 341 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--i---~~~~g~llvvDavSs~G~~pID-v~~~g--vl~asaqK~lG-P~Glg~livr 341 (621)
++++.+|.++++.|..++..|+ | ++++|+++++|+++.++..+++ ..++| +++++.||||| |.|.|..++.
T Consensus 639 ~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG 718 (954)
T PRK12566 639 GDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPADIGADVSHMNLHKTFCIPHGGGGPGMG 718 (954)
T ss_pred CCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhhcCCCEEEecCCcccCcCccCCCCccc
Confidence 3688999999999987776665 3 4678999999999999998888 47786 99999999996 9888888888
Q ss_pred h-hHHhhhCCCCCce--eeccccccCCCccC---CchHHHHHHHHHHHHHHHhhCCHHHHHHHH--HHHHHHHHHHHHc
Q psy8733 342 E-DLLEYALPITPTV--FHFKINADNNSVYN---TPPTFVVHVIQRVFAWIKRQGGLAKMEQNS--LQKSVLLYQEIDN 412 (621)
Q Consensus 342 ~-~ll~~~~~~~P~~--ld~~~~~~~~s~~~---TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~--~~la~~L~e~L~~ 412 (621)
. ...+.+.|..|.+ .+... +..+.+ ..++.....+-.|+.|+... |.+..+.+. ..++.++.+.|.+
T Consensus 719 ~iav~~~L~pfLp~~P~~d~~G---~~~r~ga~S~~~~gsa~~l~~A~~Yi~~l-G~eLk~aa~~ailnAnYla~rL~~ 793 (954)
T PRK12566 719 PIGVRAHLAPFVANHPVVPVEG---PDPNNGAVSAAPWGSASILPISWMYIAMM-GPQLADASEVAILSANYLANQLGG 793 (954)
T ss_pred hhhhhhhhhhhccCCCCcCCCC---CCCCCCceeecccchHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHhHh
Confidence 7 5555555544432 11111 111122 22233444467788899888 666333344 6788899999976
No 173
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=98.70 E-value=2.5e-07 Score=100.91 Aligned_cols=129 Identities=12% Similarity=0.064 Sum_probs=82.1
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccCC-Cc--cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIGP-AG--ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lGP-~G--lg~liv 340 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+.+.+.....+. ..|++++|.+|++|. .+ .|+++.
T Consensus 143 i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~ 222 (388)
T PRK07811 143 ITPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVT 222 (388)
T ss_pred cCcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCCchhhCCcEEEecCceeecCCCCcEEEEEEE
Confidence 56689999999999999998886 4567899999999998875433332 234999999999974 44 477777
Q ss_pred ch-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 341 RE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 341 r~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
++ ++.+++.. + .. ..-.+++....+ .++.-++ -++.+.++..+.+..+.+.|++.+++
T Consensus 223 ~~~~l~~~~~~----~---~~-----~~g~~~s~~~a~---l~~~~L~---tl~~R~~~~~~na~~la~~L~~~p~v 281 (388)
T PRK07811 223 NDEELDEAFAF----L---QN-----GAGAVPGPFDAY---LTLRGLK---TLAVRMDRHSENAEAVAEFLAGHPEV 281 (388)
T ss_pred CCHHHHHHHHH----H---HH-----hcCCCCCHHHHH---HHHhccC---cHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 64 44443321 0 00 000111111111 1122221 25566667777888999999988754
No 174
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=98.69 E-value=2e-07 Score=101.68 Aligned_cols=273 Identities=15% Similarity=0.150 Sum_probs=140.8
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHH-HHHHHHHHHHHHHhCCC-CCCEEEEEcCCcchhh
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYT-KINNDTQAALRELLNVP-NNYKILFLQGGGTGMF 128 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~-~i~~~ar~~La~Ll~~p-~~yeI~f~~gggT~~~ 128 (621)
...++.|.-..+++.|++++...+.+-...|.. .+..+.+-++. ++-.-+++++++||++. +.+-+-+=+-||+.+
T Consensus 21 ~~l~LiaSEN~~Sp~v~~al~S~l~nkyaeg~p-g~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~A- 98 (399)
T PF00464_consen 21 STLNLIASENYMSPAVREALGSDLTNKYAEGYP-GKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQA- 98 (399)
T ss_dssp HSEE-CTT-----HHHHHHHTSGGGGS-TTEET-TEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHH-
T ss_pred cCccccCcccccCHHHHHHhCCcceeeccccCC-CcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHH-
Confidence 468899999999999999999988775444422 12233344444 45556889999999996 334455555666662
Q ss_pred hHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHH---HHHHHHHHhCCceeeecccccc
Q psy8733 129 AAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSK---KAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 129 ~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~---~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
|+ ++...|++|||++..+..-..|| ......++.+..-..
T Consensus 99 -----n~-------------------------av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~------- 141 (399)
T PF00464_consen 99 -----NL-------------------------AVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLY------- 141 (399)
T ss_dssp -----HH-------------------------HHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHH-------
T ss_pred -----HH-------------------------HHHHHHHhhcCcEEecChhhcccccccccccccccccccce-------
Confidence 22 34555666777766666544333 221110000000000
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~ 285 (621)
.+.++|. ++ +-...+|-|+ .+++....++++|.+-....+
T Consensus 142 --------------~~~~~y~----~d-~~~~~ID~d~---------------------l~~~a~~~kPklIi~G~S~y~ 181 (399)
T PF00464_consen 142 --------------FESVPYP----VD-PDTGLIDYDE---------------------LEKLAKEHKPKLIICGASSYP 181 (399)
T ss_dssp --------------SEEEEEE----B--TTTSSB-HHH---------------------HHHHHHHH--SEEEEE-SSTS
T ss_pred --------------EEEEeee----ee-cCCCeECHHH---------------------HHHHHhhcCCCEEEECchhcc
Confidence 0000000 00 0000011111 111122236788887765543
Q ss_pred ccccccc-----ccccCCCcEEEecccccC-----CCcccccccceEEecccccc-CCCccEEEEEc-------------
Q psy8733 286 DGVEFNY-----IPDSQGIPLVSDMSSNFL-----SRKFDVSKFGVIIAGAQKNI-GPAGITVVIVR------------- 341 (621)
Q Consensus 286 tGv~~p~-----i~~~~g~llvvDavSs~G-----~~pIDv~~~gvl~asaqK~l-GP~Glg~livr------------- 341 (621)
-..|. |+++.|+++++|+++-.| ..|=+++..|++.+|.||.| ||.| |++..+
T Consensus 182 --~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~ADvvt~sThKtl~GPrg-giI~~~~~~~~~~~~~~~~ 258 (399)
T PF00464_consen 182 --RPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPYADVVTGSTHKTLRGPRG-GIILTNKGSKNVDKKGKEI 258 (399)
T ss_dssp --S---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCTSSEEEEESSGGG-SSS--EEEEES-SEEEE-TTS-EE
T ss_pred --CccCHHHHHHHHHhcCcEEEecccccccceehheecCccccceEEEeeccccccccCc-eEEEEcCCccccCCccccc
Confidence 22332 566789999999988643 44445555789999999999 8999 777777
Q ss_pred -hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 342 -EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 342 -~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
+++.+++.. .--+..-+.|-...|.+++.+|+...+. ......++..+.++.|-+.|.+.| +.+
T Consensus 259 ~~~l~~~I~~-----------avfP~~qg~~h~~~iaalAval~ea~~~-~fk~Ya~qVv~NAk~La~~L~~~G-~~v 323 (399)
T PF00464_consen 259 DEELAEKIDS-----------AVFPGLQGGPHMHRIAALAVALKEALSP-EFKEYAKQVVKNAKALAEALQERG-FKV 323 (399)
T ss_dssp EHHHHHHHHH-----------HHTTTT-SS--HHHHHHHHHHHHHHTSH-HHHHHHHHHHHHHHHHHHHHHHTT--EE
T ss_pred HHHHHHHhcc-----------ccCCCcccCcchhHHHHHHHHHhcccCH-HHHHHHHHHHHHHHHHHHHHhhCC-cEE
Confidence 344443321 0013344567788999999999987654 347888888899999999998875 543
No 175
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.69 E-value=4.3e-07 Score=100.42 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=56.5
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccCCCc--cEEEEEc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIGPAG--ITVVIVR 341 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lGP~G--lg~livr 341 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+++.+...-.++ ..|+++.|.||++|++| +|.+++.
T Consensus 145 i~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~ 224 (427)
T PRK05994 145 ITPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVD 224 (427)
T ss_pred cCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccccCCccccCCcEEEEcCccccCCCCCcEEEEEEe
Confidence 56789999999999999999996 4568899999999998765333332 23499999999998555 6777774
No 176
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.68 E-value=1.1e-05 Score=87.59 Aligned_cols=248 Identities=17% Similarity=0.176 Sum_probs=141.6
Q ss_pred CCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhccC
Q psy8733 62 LPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMN 141 (621)
Q Consensus 62 ~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~~ 141 (621)
+-++-++++.+.+.+-.- .- .....+-++.+++++|++. .+.+ +|||. ||-+....++
T Consensus 13 i~~~e~~~v~~vl~sg~i--------~~-----G~~v~~FE~~~ae~~G~k~---ava~-~sgT~-----AL~laL~al~ 70 (374)
T COG0399 13 IGEEELAAVQEVLKSGWL--------TG-----GPFVRRFEQAFAEYLGVKY---AVAV-SSGTA-----ALHLALLALA 70 (374)
T ss_pred cchHHHHHHHHHHHcCCe--------ec-----ChHHHHHHHHHHHHhCCCe---EEEe-cChHH-----HHHHHHHhcC
Confidence 567778888888754221 10 1344556678999999986 3444 67898 4444444556
Q ss_pred CCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCcc
Q psy8733 142 VPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEAS 221 (621)
Q Consensus 142 ~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 221 (621)
+.+||+|+++-- -|-+... ..-..|+..+..+.+ ..+
T Consensus 71 ig~GDeVI~ps~----TfvATan-----------------------~i~~~Ga~PVFvDid--------~~T-------- 107 (374)
T COG0399 71 IGPGDEVIVPSF----TFVATAN-----------------------AVLLVGAKPVFVDID--------PDT-------- 107 (374)
T ss_pred CCCCCEEEecCC----chHHHHH-----------------------HHHHcCCeEEEEecC--------Ccc--------
Confidence 999999998853 3322211 122345544433321 000
Q ss_pred ccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc-----cccc
Q psy8733 222 YLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY-----IPDS 296 (621)
Q Consensus 222 ~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~-----i~~~ 296 (621)
|- +|++.+ +.++.++||+|..+| ..|...|. ++++
T Consensus 108 -------------~n--id~~~i----------------------e~aIt~~tKAIipVh---l~G~~~dm~~i~~la~~ 147 (374)
T COG0399 108 -------------LN--IDPDLI----------------------EAAITPRTKAIIPVH---LAGQPCDMDAIMALAKR 147 (374)
T ss_pred -------------cC--CCHHHH----------------------HHHcccCCeEEEEeh---hccCCCCHHHHHHHHHH
Confidence 00 222221 124778899999998 45777764 6789
Q ss_pred CCCcEEEecccccCCCccc--ccccc---eEEeccccccC-CCccEEEEEchhHHhhhCCCC-----Cceeeccc-cccC
Q psy8733 297 QGIPLVSDMSSNFLSRKFD--VSKFG---VIIAGAQKNIG-PAGITVVIVREDLLEYALPIT-----PTVFHFKI-NADN 364 (621)
Q Consensus 297 ~g~llvvDavSs~G~~pID--v~~~g---vl~asaqK~lG-P~Glg~livr~~ll~~~~~~~-----P~~ld~~~-~~~~ 364 (621)
+|+++|-||+|++|+.-=. +-.+| ...+-+.|+++ -.|=.++.=++++.++++... +.. +++. +..-
T Consensus 148 ~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~hG~~~~~-~~~y~~~~~ 226 (374)
T COG0399 148 HGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRNHGLSRDA-VFKYLHEEL 226 (374)
T ss_pred cCCeEEEEcchhccCeecCcccccccceEEEEecCCCCccccCceEEEeCCHHHHHHHHHHHHhCcCCCc-cccceeeec
Confidence 9999999999999985432 12233 77888899996 456444444556666654310 100 0000 1111
Q ss_pred CCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccC
Q psy8733 365 NSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQ 422 (621)
Q Consensus 365 ~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~ 422 (621)
+..+.-.++.+..+ +..|. -++.+.++-++.++...+.|++++++.....+
T Consensus 227 G~N~rm~~iqAAig----l~QL~---~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~ 277 (374)
T COG0399 227 GYNYRLTEIQAAIG----LAQLE---RLDEINERRREIAQIYAEALKGLPGITLPPEP 277 (374)
T ss_pred ccccCHHHHHHHHH----HHHHH---HHHHHHHHHHHHHHHHHHHhhcCCCccccCCC
Confidence 22222233333222 22232 36778888888888888999988764444333
No 177
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=98.68 E-value=5.3e-06 Score=93.80 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=50.4
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----Cccccccc--c--eE-EeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKFDVSKF--G--VI-IAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pIDv~~~--g--vl-~asaqK~lGP 332 (621)
+++++++|.+++-.|.||...+. +++++++++|+|-+-.-.. ....+..+ + ++ +.|--|.+|.
T Consensus 278 ~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~ 357 (517)
T PRK13355 278 ITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMI 357 (517)
T ss_pred cCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccC
Confidence 46789999999999999999883 3457899999999743211 11222222 2 33 4666899998
Q ss_pred Cc--cEEEEEc
Q psy8733 333 AG--ITVVIVR 341 (621)
Q Consensus 333 ~G--lg~livr 341 (621)
+| +|++++.
T Consensus 358 ~G~RiG~~i~~ 368 (517)
T PRK13355 358 AGYRIGWMILS 368 (517)
T ss_pred cccceEEEEee
Confidence 88 7888865
No 178
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=98.68 E-value=1.6e-06 Score=94.04 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=50.4
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccc---ccccc-eEEeccc--cccCCC-ccEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFD---VSKFG-VIIAGAQ--KNIGPA-GITV 337 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pID---v~~~g-vl~asaq--K~lGP~-Glg~ 337 (621)
+++++++|.++|. +|...++ +++++|+++|.|+++++|+. .+ +..++ +-++|.| |.+++. |-++
T Consensus 116 i~~~tk~i~~~~~---~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~-~~~~~~g~~~~~~~~Sf~~~K~l~~g~gG~~ 191 (375)
T PRK11706 116 ITPKTRAIVPVHY---AGVACEMDTIMALAKKHNLFVVEDAAQGVMST-YKGRALGTIGHIGCFSFHETKNYTAGEGGAL 191 (375)
T ss_pred cCCCCeEEEEeCC---CCCccCHHHHHHHHHHcCCEEEEECccccccc-cCCeeeecCcCEEEEeCCCCccccccCCeEE
Confidence 4567899998873 7887774 45689999999999999973 22 22333 5566766 999753 3333
Q ss_pred EEEchhHHhhh
Q psy8733 338 VIVREDLLEYA 348 (621)
Q Consensus 338 livr~~ll~~~ 348 (621)
+.-++++.+++
T Consensus 192 ~~~~~~~~~~~ 202 (375)
T PRK11706 192 LINDPALIERA 202 (375)
T ss_pred EECCHHHHHHH
Confidence 33345666554
No 179
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=98.67 E-value=3.7e-06 Score=92.92 Aligned_cols=139 Identities=14% Similarity=0.186 Sum_probs=82.7
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEeccccc---CCCc-ccc---cccc--eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNF---LSRK-FDV---SKFG--VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~---G~~p-IDv---~~~g--vl~asaqK~lGP 332 (621)
++++++++.+++-.|.||...+. +++++|+++|+|-+-.- ...+ +.+ +..+ +.+.|-=|.++.
T Consensus 187 ~~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~ 266 (430)
T PLN00145 187 ADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVV 266 (430)
T ss_pred hCcCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCC
Confidence 45678999999999999999983 34678999999987542 2222 222 2222 778888899988
Q ss_pred Cc--cEEEEEc--hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVR--EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 333 ~G--lg~livr--~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e 408 (621)
|| +|+++.. +++++...- .- .+... ......++.+.-+++..+|+.-.+. -++.+.++.++..+.+++
T Consensus 267 pG~RlG~iv~~~~~~~~~~~~~-~~---~~~~~---~~~~~~~~~~~Q~a~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 338 (430)
T PLN00145 267 PGWRLGWIATCDPNGILKETKV-VD---SIRNY---LNISTDPATFVQGAIPQIIANTKEE-FFTKTLGLLKETADICYE 338 (430)
T ss_pred CCeeEEEEEEecchhhhhhhHH-HH---HHHHH---hcccCCCCHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHHH
Confidence 88 7888763 333321100 00 00000 1111223444445544444321111 256677777888888899
Q ss_pred HHHccCCc
Q psy8733 409 EIDNSDKF 416 (621)
Q Consensus 409 ~L~~~~g~ 416 (621)
.|+.++|+
T Consensus 339 ~L~~~~g~ 346 (430)
T PLN00145 339 KIKEIKCI 346 (430)
T ss_pred HHhcCCCC
Confidence 88877544
No 180
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=98.66 E-value=6.1e-07 Score=100.17 Aligned_cols=131 Identities=14% Similarity=0.126 Sum_probs=86.2
Q ss_pred CCceEEEEeccccccc-ccccc--------ccccCCCcEEEecccccC-----------CCccccc-------c-cceEE
Q psy8733 272 PEASYLYYCDNETVDG-VEFNY--------IPDSQGIPLVSDMSSNFL-----------SRKFDVS-------K-FGVII 323 (621)
Q Consensus 272 ~~t~~V~~thnET~tG-v~~p~--------i~~~~g~llvvDavSs~G-----------~~pIDv~-------~-~gvl~ 323 (621)
+++++|.+++-.|.+| ...+. +++++|+++|.|+++..+ ....++. . .|+++
T Consensus 176 ~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~ 255 (460)
T PRK13238 176 ENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLT 255 (460)
T ss_pred CceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEE
Confidence 4699999998888887 55542 456899999999988652 2344432 2 24888
Q ss_pred ecccccc-CCCccEEEEEc-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q psy8733 324 AGAQKNI-GPAGITVVIVR-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQ 401 (621)
Q Consensus 324 asaqK~l-GP~Glg~livr-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~ 401 (621)
+|++|.+ +|.| |+++.+ +++.+++......+ ....+++.++.....|+..+|+...+..-++.+ .+
T Consensus 256 ~Sg~K~g~~~~G-G~i~~~d~~l~~~~~~~~~~~-------~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~----~~ 323 (460)
T PRK13238 256 MSAKKDAMVNIG-GLLCFRDEDLFTECRTLCILY-------EGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYR----IG 323 (460)
T ss_pred EecccCCCCcce-eEEEcChHHHHHHhhhccccc-------CCcccccCcHHHHHHHHHhhHHHhhChHHHHHH----HH
Confidence 8999987 6888 899988 57777664422110 112356777777778888777654433112222 22
Q ss_pred HHHHHHHHHHccC
Q psy8733 402 KSVLLYQEIDNSD 414 (621)
Q Consensus 402 la~~L~e~L~~~~ 414 (621)
..++|.+.|++.|
T Consensus 324 ~~~~l~~~L~~~G 336 (460)
T PRK13238 324 QVEYLGEGLEEAG 336 (460)
T ss_pred HHHHHHHHHHHCC
Confidence 3578888888764
No 181
>PRK10534 L-threonine aldolase; Provisional
Probab=98.65 E-value=3.7e-06 Score=88.94 Aligned_cols=45 Identities=9% Similarity=0.064 Sum_probs=36.5
Q ss_pred HHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHHHHH
Q psy8733 559 ELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRH 607 (621)
Q Consensus 559 ~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~ 607 (621)
..|.+.++++||....|- .+|++.+..+|.|+.+++++.|+.|..
T Consensus 288 ~~~~~~l~~~gi~v~~~~----~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 288 AALGEYMRERNVLINASP----IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred HHHHHHHHHcCeeecCCc----eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 356677888899886552 489999888999999999999998754
No 182
>PRK07681 aspartate aminotransferase; Provisional
Probab=98.64 E-value=1.1e-05 Score=87.79 Aligned_cols=130 Identities=12% Similarity=-0.028 Sum_probs=80.5
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----Cccc---ccc-cc--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKFD---VSK-FG--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pID---v~~-~g--vl~asaqK~lG 331 (621)
+.+++++|++|+-.|+||...+. +++.+++++|+|-+-+-.. .+.. ++. .+ +++.|--|.+|
T Consensus 163 ~~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 242 (399)
T PRK07681 163 IADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYS 242 (399)
T ss_pred ccccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccC
Confidence 34578999999768899999883 3457899999999876321 1122 222 23 66778899999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|+++.++++.+++.... .....+++...-.++..+|+.-.+ -++...++.+++.+.+.+.
T Consensus 243 ~~GlRiG~~i~~~~l~~~~~~~~------------~~~~~~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~ 308 (399)
T PRK07681 243 LAGSRIGYMIGNEEIVRALTQFK------------SNTDYGVFLPIQKAACAALRNGAA--FCEKNRGIYQERRDTLVDG 308 (399)
T ss_pred CccceeEEEecCHHHHHHHHHHH------------hhcccCCCHHHHHHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHH
Confidence 999 899999988877653210 011122333333333333321111 1445555666777778888
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|++.
T Consensus 309 L~~~ 312 (399)
T PRK07681 309 FRTF 312 (399)
T ss_pred HHHC
Confidence 8775
No 183
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=98.63 E-value=8.8e-06 Score=87.42 Aligned_cols=125 Identities=17% Similarity=0.222 Sum_probs=83.3
Q ss_pred CCCCceEEEEecccccccccc-c---c-----ccccCCCcEEEecccc-cCCC--cc--ccccc--ceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEF-N---Y-----IPDSQGIPLVSDMSSN-FLSR--KF--DVSKF--GVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~-p---~-----i~~~~g~llvvDavSs-~G~~--pI--Dv~~~--gvl~asaqK~lGP~ 333 (621)
+++++++|.+.++.+.+|+.. + + +++++++++|+|.+++ ++.. ++ +.... +++.+ -|.+| +
T Consensus 167 ~~~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~t~--sK~~~-~ 243 (379)
T TIGR00707 167 IDDETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIITL--AKGLG-G 243 (379)
T ss_pred hhhCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEEEE--ccccc-C
Confidence 445789999999888888753 2 1 3567899999999987 5431 12 11111 25544 59998 4
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|+++.++++.+.+.+.. ....+ +.|.....++.++|+.+.+. .+.++.+++.+++++.|.
T Consensus 244 G~riG~~~~~~~~~~~~~~~~-----------~~~~~-~~~~~~~~aa~aaL~~~~~~----~~~~~~~~~~~~~~~~l~ 307 (379)
T TIGR00707 244 GVPIGATLAKEEVAEAFTPGD-----------HGSTF-GGNPLACAAALAVLEVIEKE----RLLENVKEKGDYFKERLE 307 (379)
T ss_pred CcccEEEEEcHHHHhhhcCCC-----------CCCCC-CCCHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHH
Confidence 4 899999988876653210 11222 34667788888899887542 456777778888888887
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
++
T Consensus 308 ~~ 309 (379)
T TIGR00707 308 EL 309 (379)
T ss_pred HH
Confidence 65
No 184
>PLN02242 methionine gamma-lyase
Probab=98.63 E-value=7.3e-07 Score=98.36 Aligned_cols=128 Identities=12% Similarity=0.142 Sum_probs=85.3
Q ss_pred CCC-CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccccc--ceEEeccccccCCCc---cEEE
Q psy8733 270 RDP-EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKF--GVIIAGAQKNIGPAG---ITVV 338 (621)
Q Consensus 270 i~~-~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~--gvl~asaqK~lGP~G---lg~l 338 (621)
+++ ++++|++++..|.+|...|+ +++++|+++|+|.+.+.+. ++..++ ++++.|..|++|..| .|++
T Consensus 159 i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~--~~~~~~g~divv~S~SK~l~g~g~~~gG~i 236 (418)
T PLN02242 159 VVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMV--LSPARLGADVVVHSISKFISGGADIIAGAV 236 (418)
T ss_pred cCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccC--CCHHHcCCcEEEEeCccccCCCCCceEEEE
Confidence 455 49999999999999999886 4568899999999886543 343444 489999999998666 4888
Q ss_pred EEchhHHhhhCCCCCceeeccccccCCCccC-CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 339 IVREDLLEYALPITPTVFHFKINADNNSVYN-TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 339 ivr~~ll~~~~~~~P~~ld~~~~~~~~s~~~-TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+.++++++++...... .....+ .++....+.+...++ -++.+.+++.+.+.++.+.|++.+
T Consensus 237 v~~~~li~~l~~~~~~---------~~~~~g~~~~~~~A~l~~~~l~------tl~~r~~~~~~~a~~la~~L~~~~ 298 (418)
T PLN02242 237 CGPAELVNSMMDLHHG---------ALMLLGPTMNPKVAFELSERLP------HLSLRMKEHCRRAMEYAKRMKELG 298 (418)
T ss_pred EcCHHHHHHHHHHhhh---------hhhccCCCCCHHHHHHHHcCCC------cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8888887765321100 001112 222222222111122 356666788889999999999874
No 185
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=98.63 E-value=9.6e-07 Score=96.25 Aligned_cols=128 Identities=8% Similarity=0.007 Sum_probs=81.6
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccC-CCc--cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIG-PAG--ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lG-P~G--lg~liv 340 (621)
+++++++|++++-.+.+|...|+ +++++|+++++|.+++.+...-+++ ..|+++.|.+|+++ ++| .|+++.
T Consensus 133 i~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~ 212 (382)
T TIGR02080 133 LAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVIAGAVIA 212 (382)
T ss_pred cCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeecceeccCCCCceeEEEEe
Confidence 45679999999999999999985 4567899999999987665332222 23599999999995 777 676666
Q ss_pred c-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 341 R-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 341 r-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
+ +++.+++.. +.. ..-.+.+.+..+.+ ++-++ -+..+.+++.+.+..+.+.|++.+.
T Consensus 213 ~~~~~~~~l~~-------~~~-----~~g~~~sp~~a~l~---lr~l~---tl~~R~~~~~~na~~~a~~L~~~p~ 270 (382)
T TIGR02080 213 KDPQVAEELAW-------WAN-----NLGVTGGAFDSYLT---LRGLR---TLVARMRLQQRNAQAIVEYLQTQPL 270 (382)
T ss_pred CCHHHHHHHHH-------HHH-----ccCCCCCHHHHHHH---Hcccc---hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4 555554421 110 00112222222222 22221 2455566777788888888988763
No 186
>PTZ00377 alanine aminotransferase; Provisional
Probab=98.62 E-value=1.5e-05 Score=89.22 Aligned_cols=129 Identities=16% Similarity=0.124 Sum_probs=79.3
Q ss_pred CceEEEEecccccccccccc--------ccccCCCcEEEecccccC----CCcc--------ccccc-----c-eEEecc
Q psy8733 273 EASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL----SRKF--------DVSKF-----G-VIIAGA 326 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G----~~pI--------Dv~~~-----g-vl~asa 326 (621)
++++|++++-.|+||...+. +++++++++|+|-+=.-. ..+. +++.- . +++.|-
T Consensus 218 ~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~ 297 (481)
T PTZ00377 218 TPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHST 297 (481)
T ss_pred CeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecC
Confidence 68999999888999999983 345789999999765421 1111 12211 2 566788
Q ss_pred cccc-CCCc--cEEEEE---chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHH----------HHhhC
Q psy8733 327 QKNI-GPAG--ITVVIV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW----------IKRQG 390 (621)
Q Consensus 327 qK~l-GP~G--lg~liv---r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~----------i~~~g 390 (621)
=|.+ |.+| +|.+++ .+++.+++... . +....++...-+++..+|+. ..++
T Consensus 298 SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~----------~---~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~- 363 (481)
T PTZ00377 298 SKGIIGECGRRGGYFELTNIPPEVREQIYKL----------A---SINLCSNVVGQLMTGLMCNPPREGDASYPLYKRE- 363 (481)
T ss_pred CcccccCCcCceEEEEEeCCCHHHHHHHHHH----------h---heecCCChHHHHHHHHHhCCCCCCcccHHHHHHH-
Confidence 9975 7788 577776 67777655320 0 11123455556666666632 1111
Q ss_pred CHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 391 GLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 391 Gl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
+..+.++.+++.+.+.+.|++++|+
T Consensus 364 -~~~~~~~~~~rr~~l~~~L~~~~g~ 388 (481)
T PTZ00377 364 -RDAIFTSLKRRAELLTDELNKIEGV 388 (481)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3444445677778888888877544
No 187
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=98.62 E-value=2.1e-06 Score=92.06 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=57.3
Q ss_pred CCceEEEEecccccccccccc-----ccc--cCCCcEEEecccccCCCc---cc-ccccc--eEEeccccccCCCcc--E
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPD--SQGIPLVSDMSSNFLSRK---FD-VSKFG--VIIAGAQKNIGPAGI--T 336 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~--~~g~llvvDavSs~G~~p---ID-v~~~g--vl~asaqK~lGP~Gl--g 336 (621)
+++++|++|+-.|.||...+. +.+ ..++++|+|-+-.-.... ++ +.+++ +++.|--|++|.+|+ |
T Consensus 144 ~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~rSfSK~~glaGlRiG 223 (351)
T PRK01688 144 DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLVILRTLSKAFALAGLRCG 223 (351)
T ss_pred cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCCEEEEecchHhhcCHHHHHh
Confidence 478999999999999999984 222 226789999985322211 11 12333 788888999999995 9
Q ss_pred EEEEchhHHhhhCC
Q psy8733 337 VVIVREDLLEYALP 350 (621)
Q Consensus 337 ~livr~~ll~~~~~ 350 (621)
+++.++++++.+..
T Consensus 224 y~i~~~~~i~~l~~ 237 (351)
T PRK01688 224 FTLANEEVINLLLK 237 (351)
T ss_pred HHhCCHHHHHHHHh
Confidence 99999999876643
No 188
>PRK06107 aspartate aminotransferase; Provisional
Probab=98.61 E-value=1.7e-05 Score=86.52 Aligned_cols=132 Identities=8% Similarity=0.081 Sum_probs=81.9
Q ss_pred CCCCceEEEEecccccccccccc--------ccccC-CCcEEEecccccC---CCcc----cc-ccc-c--eEEeccccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQ-GIPLVSDMSSNFL---SRKF----DV-SKF-G--VIIAGAQKN 329 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~-g~llvvDavSs~G---~~pI----Dv-~~~-g--vl~asaqK~ 329 (621)
+.+++++|.+++-.|.||...+. +++++ ++++|+|-+-+-. ..+. .+ .++ + +++.|-.|.
T Consensus 163 ~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~ 242 (402)
T PRK06107 163 ITPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKT 242 (402)
T ss_pred cCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchh
Confidence 34678899999888999999873 23566 8999999754311 1111 11 122 2 556666999
Q ss_pred cCCCcc--EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q psy8733 330 IGPAGI--TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLY 407 (621)
Q Consensus 330 lGP~Gl--g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~ 407 (621)
+|.+|+ |+++.++++.+++.. +. .....+++....+++..+|+--.+ -++...++.+++.+.++
T Consensus 243 ~~~pGlRiG~~~~~~~~~~~~~~-------~~-----~~~~~~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~ 308 (402)
T PRK06107 243 YAMTGWRIGYAAGPADLIAAINK-------LQ-----SQSSSCPSSISQAAAAAALNGDQS--FVTESVAVYKQRRDYAL 308 (402)
T ss_pred hcCcccceeeeecCHHHHHHHHH-------HH-----HhcccCCChHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHHH
Confidence 998995 999999888776532 10 011234445555555544431011 14555666777788888
Q ss_pred HHHHccCC
Q psy8733 408 QEIDNSDK 415 (621)
Q Consensus 408 e~L~~~~g 415 (621)
+.|++++|
T Consensus 309 ~~L~~~~g 316 (402)
T PRK06107 309 ALLNAIPG 316 (402)
T ss_pred HHHhcCCC
Confidence 88877654
No 189
>PRK06234 methionine gamma-lyase; Provisional
Probab=98.61 E-value=9.4e-07 Score=96.83 Aligned_cols=129 Identities=11% Similarity=0.068 Sum_probs=83.5
Q ss_pred CCCCceEEEEecccccccccccc-----ccccC--CCcEEEecccccCCCccccc-ccceEEeccccccCCCc---cEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQ--GIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIGPAG---ITVV 338 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~--g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lGP~G---lg~l 338 (621)
+++++++|++++-.+.+|...|+ +++++ ++++++|.+.+.+.....++ ..|+++.|.+|+++.+| .|++
T Consensus 146 i~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l~~g~Divv~S~sK~l~g~g~~~gG~v 225 (400)
T PRK06234 146 LKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFV 225 (400)
T ss_pred hccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCchhhCCcEEEeeccccccCCCCceeEEE
Confidence 56789999999999999999986 34554 89999999987765332222 23499999999998666 5899
Q ss_pred EEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 339 IVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 339 ivr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+.++++++++.... .... .+ .+.+.+..+.+...|+ -++.+.++..+.+..+.+.|++.+
T Consensus 226 ~~~~~~~~~l~~~~-----~~~~--~g---~~l~p~~a~l~~~~l~------tl~~r~~~~~~na~~~a~~L~~~~ 285 (400)
T PRK06234 226 VGKEEFINQVKLFG-----IKDM--TG---SVIGPFEAFLIIRGMK------TLQIRMEKHCKNAMKVAKFLESHP 285 (400)
T ss_pred EecHHHHHHHHHHH-----HHHh--cC---CCCCHHHHHHHHhccC------cHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99998877653110 0000 01 1222222222222222 245566667778888888888766
No 190
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=98.61 E-value=1.1e-06 Score=93.47 Aligned_cols=127 Identities=17% Similarity=0.066 Sum_probs=87.7
Q ss_pred CceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCcccc----cccc--eEEeccccccCCCcc--E
Q psy8733 273 EASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRKFDV----SKFG--VIIAGAQKNIGPAGI--T 336 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~pIDv----~~~g--vl~asaqK~lGP~Gl--g 336 (621)
++++|.+++..|.||...+. +++++|+++|+|.+..-....-++ +..+ +++.|..|++|++|+ |
T Consensus 125 ~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G 204 (330)
T TIGR01140 125 ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLG 204 (330)
T ss_pred cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEecchhhcCchhhhh
Confidence 57789999999999999983 235789999999987533322122 1223 889999999998885 9
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
+++.++++++++....+ ..+++.+. ..++.+++.+.+-.+.+.++.+++.+.+++.|++++++
T Consensus 205 ~i~~~~~~~~~l~~~~~--------------~~~~s~~~---q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 267 (330)
T TIGR01140 205 FVVAHPALLARLREALG--------------PWTVNGPA---RAAGRAALADTAWQAATRARLAAERARLAALLARLGGL 267 (330)
T ss_pred heeCCHHHHHHHHhcCC--------------CCCchHHH---HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999998877643211 12333333 34445555543124677888888999999999987643
No 191
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=98.60 E-value=7.3e-07 Score=97.28 Aligned_cols=128 Identities=11% Similarity=0.089 Sum_probs=80.4
Q ss_pred CCC-CceEEEEecccccccccccc-----ccccCCCcEEEecccccCC--CcccccccceEEeccccccC-CCc-c-EEE
Q psy8733 270 RDP-EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS--RKFDVSKFGVIIAGAQKNIG-PAG-I-TVV 338 (621)
Q Consensus 270 i~~-~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~--~pIDv~~~gvl~asaqK~lG-P~G-l-g~l 338 (621)
+++ ++++|++.+..+.+|...|+ +++++|+++|+|.+++.+. .|++. ..|+++.|.+|++| |.. + |.+
T Consensus 133 i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~-GaDivv~S~sK~l~g~~d~~gG~v 211 (385)
T PRK08574 133 IKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPLRH-GADFVVHSLTKYIAGHNDVVGGVA 211 (385)
T ss_pred cCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCChhhh-CCcEEEeeCceeecCCCCceeEEE
Confidence 445 79999999999999999986 4568899999999988764 34432 12599999999996 544 2 545
Q ss_pred EE-chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 339 IV-REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 339 iv-r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
+. ++++++++.. +... .+ .+++.+..+.+...++ -++.+.+++.+.+..+.+.|++.+.+
T Consensus 212 i~~~~~~~~~~~~-------~~~~--~g---~~~~p~~a~l~l~~l~------tL~~R~~~~~~na~~la~~L~~~p~v 272 (385)
T PRK08574 212 VAWSGEFLEELWE-------WRRR--LG---TIMQPFEAYLVLRGLK------TLEVRFERQCRNAMAIAEFLSEHPKV 272 (385)
T ss_pred EECcHHHHHHHHH-------HHHh--cC---CCCCHHHHHHHHcccC------cHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 55 4555554421 1110 00 1222222222222222 24556677777888888999887743
No 192
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=98.60 E-value=6.2e-06 Score=88.71 Aligned_cols=125 Identities=10% Similarity=0.084 Sum_probs=78.6
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC---c--ccc-ccc-c-eEEeccccccCCCc--cE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR---K--FDV-SKF-G-VIIAGAQKNIGPAG--IT 336 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~---p--IDv-~~~-g-vl~asaqK~lGP~G--lg 336 (621)
+++++|.+|.-.+.||...+. +.+..++++|+|-+.+.... + +.. +.. + +++.|--|.+|.+| +|
T Consensus 159 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG 238 (368)
T PRK03317 159 HRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLG 238 (368)
T ss_pred cCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhh
Confidence 467888899888999999984 34445799999998764321 1 111 112 2 66778999999778 59
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+++.++++.+.+.... ..+ +.+....+++.++|+.... +.+..++.+++.+.+.+.|...
T Consensus 239 ~~~~~~~~~~~l~~~~-------------~~~-~~s~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~l~~~L~~~ 298 (368)
T PRK03317 239 YLAAAPAVVDALRLVR-------------LPY-HLSAVTQAAARAALRHADE---LLASVAALRAERDRVVAWLREL 298 (368)
T ss_pred hhhCCHHHHHHHHhcC-------------CCC-CCCHHHHHHHHHHhhCHHH---HHHHHHHHHHHHHHHHHHHHHC
Confidence 9999998887653211 112 2334455555556654322 3333344555666677777664
No 193
>PRK05939 hypothetical protein; Provisional
Probab=98.60 E-value=7.9e-07 Score=97.45 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=56.1
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCc--cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAG--ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~G--lg~liv 340 (621)
+++++++|++++..|.+|...|+ +++++|+++|+|++++.+. .++..++| +++.|.+|++|..| +|.+++
T Consensus 128 l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~-~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~ 206 (397)
T PRK05939 128 IRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPW-LFRPKDVGASLVINSLSKYIAGHGNALGGAVT 206 (397)
T ss_pred CCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccccc-ccCccccCCEEEEecCeecccCCCCeEEEEEe
Confidence 56789999999999999999886 4568999999999987764 45555555 99999999997555 455555
Q ss_pred c
Q psy8733 341 R 341 (621)
Q Consensus 341 r 341 (621)
.
T Consensus 207 ~ 207 (397)
T PRK05939 207 D 207 (397)
T ss_pred c
Confidence 3
No 194
>PLN02187 rooty/superroot1
Probab=98.59 E-value=4.2e-05 Score=85.51 Aligned_cols=132 Identities=15% Similarity=0.163 Sum_probs=80.2
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEeccccc---CCCc-cccccc---c--eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNF---LSRK-FDVSKF---G--VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~---G~~p-IDv~~~---g--vl~asaqK~lGP 332 (621)
++++++++.+|+-.|.||...+. +++++|+++|+|-+=.- +..+ ..+..+ . +++.|-=|.++.
T Consensus 201 ~~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~ 280 (462)
T PLN02187 201 ADENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVV 280 (462)
T ss_pred cCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCC
Confidence 45678999999999999999873 34578999999997542 2212 123222 2 666788999998
Q ss_pred Cc--cEEEEEc-hh-H---HhhhCCCCCceeeccccccCCCccC-CchHHHHHHHHHHHHH-HHhhCCHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVR-ED-L---LEYALPITPTVFHFKINADNNSVYN-TPPTFVVHVIQRVFAW-IKRQGGLAKMEQNSLQKS 403 (621)
Q Consensus 333 ~G--lg~livr-~~-l---l~~~~~~~P~~ld~~~~~~~~s~~~-TP~v~~I~aL~~aL~~-i~~~gGl~~i~~r~~~la 403 (621)
+| +|+++.. ++ . ++.+.. . ....... .|+.+...++..+|+- -.+ =++++.+..++..
T Consensus 281 pGlRiG~~v~~~p~~~~~~~~~~~~-------~----~~~~~~~~~~s~~~Q~a~~~~L~~~~~~--~l~~~~~~l~~~r 347 (462)
T PLN02187 281 PGWKIGWIALNDPEGVFETTKVLQS-------I----KQNLDVTPDPATIIQAALPAILEKADKN--FFAKKNKILKHNV 347 (462)
T ss_pred ccceeEEEEecCchhHHHHHHHHHH-------H----HHhccccCCCCHHHHHHHHHHHhcCcHH--HHHHHHHHHHHHH
Confidence 88 7888873 22 2 122211 0 0011111 2355555565555542 111 1556666777777
Q ss_pred HHHHHHHHccC
Q psy8733 404 VLLYQEIDNSD 414 (621)
Q Consensus 404 ~~L~e~L~~~~ 414 (621)
+.+++.|++++
T Consensus 348 ~~l~~~L~~~~ 358 (462)
T PLN02187 348 DLVCDRLKDIP 358 (462)
T ss_pred HHHHHHHhhCC
Confidence 88889888765
No 195
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=98.59 E-value=1.1e-05 Score=87.15 Aligned_cols=127 Identities=12% Similarity=0.138 Sum_probs=76.2
Q ss_pred CCCCceEEEEecccccccccccc-----ccc--cCCCcEEEecccccCC------Cccc-ccccc--eEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPD--SQGIPLVSDMSSNFLS------RKFD-VSKFG--VIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~--~~g~llvvDavSs~G~------~pID-v~~~g--vl~asaqK~lGP~ 333 (621)
+++++++|++|+-.|.||...+. +.+ ..+.++|+|-+-.-.. ..+. ++..+ +++.|-=|.+|.+
T Consensus 148 ~~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~ 227 (366)
T PRK01533 148 VDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENTLIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLA 227 (366)
T ss_pred hCcCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCCEEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcCh
Confidence 45678999999999999999984 222 1234677787542111 1111 22333 7788889999988
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|+++..+++++++... . ....+|.+...++..+|+ +..=++.+.+..++..+++.+.++
T Consensus 228 GlRiG~~i~~~~~~~~l~~~-------------~-~~~~~~~~~q~aa~~~l~---~~~~~~~~~~~~~~~r~~~~~~l~ 290 (366)
T PRK01533 228 SFRVGYAVGHEELIEKLNVV-------------R-LPFNVSSLAQKAATIAFG---DDEFIEEIVRVNTEGLRQYESFCK 290 (366)
T ss_pred HHHHhHHhCCHHHHHHHHHh-------------c-CCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 68888888887765321 0 123455556566555553 110134444555555556666666
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
.+
T Consensus 291 ~~ 292 (366)
T PRK01533 291 EN 292 (366)
T ss_pred hC
Confidence 55
No 196
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=98.59 E-value=2.1e-05 Score=86.24 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=75.5
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Cc-c---ccccc-c-eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RK-F---DVSKF-G-VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~p-I---Dv~~~-g-vl~asaqK~lGP 332 (621)
+.+++++|.+|+-.|.||...+. +++++++++|+|-+-.-.. .+ . .++.- . +++.|-=|.+|.
T Consensus 174 ~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~ 253 (412)
T PTZ00433 174 VDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVV 253 (412)
T ss_pred hccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCC
Confidence 34578999999999999998763 3457899999999764321 11 1 22221 2 667888999987
Q ss_pred Cc--cEEEEEc------hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHH-HHhhCCHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVR------EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW-IKRQGGLAKMEQNSLQKS 403 (621)
Q Consensus 333 ~G--lg~livr------~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~-i~~~gGl~~i~~r~~~la 403 (621)
+| +|++++. +++++.+.. . ....++ ++.....++..+++. ..+ =++++.++.++..
T Consensus 254 pGlRlG~~i~~~p~~~~~~~~~~~~~-----------~-~~~~~~-~~~~~q~a~~~~l~~~~~~--~~~~~~~~~~~~r 318 (412)
T PTZ00433 254 PGWRLGWLLLVDPHGNGGDFLDGMKR-----------L-GMLVCG-PCSVVQAALGEALLNTPQE--HLEQIVAKLEEGA 318 (412)
T ss_pred CCeeEEEEEEeCCcccHHHHHHHHHH-----------H-hhccCC-CChHHHHHHHHHHhcCcHH--HHHHHHHHHHHHH
Confidence 77 6777762 334433211 0 011122 233333333333321 011 1555666677777
Q ss_pred HHHHHHHHccC
Q psy8733 404 VLLYQEIDNSD 414 (621)
Q Consensus 404 ~~L~e~L~~~~ 414 (621)
+.+++.|++..
T Consensus 319 ~~l~~~L~~~~ 329 (412)
T PTZ00433 319 MVLYNHIGECI 329 (412)
T ss_pred HHHHHHHhcCC
Confidence 77888887653
No 197
>PRK08912 hypothetical protein; Provisional
Probab=98.58 E-value=4.1e-06 Score=90.73 Aligned_cols=131 Identities=13% Similarity=0.109 Sum_probs=83.4
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC---C---Ccc-ccccc-c--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL---S---RKF-DVSKF-G--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G---~---~pI-Dv~~~-g--vl~asaqK~lG 331 (621)
+++++++|.+++..|+||...+. +++++++++|+|-+..-. . .++ .+..+ + +++.|-.|.+|
T Consensus 156 ~~~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 235 (387)
T PRK08912 156 FSPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFS 235 (387)
T ss_pred hCccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhcc
Confidence 44678999999999999999873 345789999999875321 1 111 22222 2 78899999999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|+++.++++.+.+.... ....+++++.. ..++..++....+ =++.+.++.+++.+.+++.
T Consensus 236 ~~GlRiG~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~-q~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~ 301 (387)
T PRK08912 236 LTGWKVGFVCAAPPLLRVLAKAH-----------QFLTFTTPPNL-QAAVAYGLGKPDD--YFEGMRADLARSRDRLAAG 301 (387)
T ss_pred CcCceeEEEecCHHHHHHHHHHH-----------hhccccCChHH-HHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHH
Confidence 999 899999999877653210 01112333322 2222233321111 1456667777888889999
Q ss_pred HHccC
Q psy8733 410 IDNSD 414 (621)
Q Consensus 410 L~~~~ 414 (621)
|.+.+
T Consensus 302 L~~~g 306 (387)
T PRK08912 302 LRRIG 306 (387)
T ss_pred HHhCC
Confidence 98873
No 198
>PLN02656 tyrosine transaminase
Probab=98.58 E-value=1.5e-05 Score=87.35 Aligned_cols=131 Identities=14% Similarity=0.154 Sum_probs=80.9
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC---CCc-ccc---cccc--eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL---SRK-FDV---SKFG--VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G---~~p-IDv---~~~g--vl~asaqK~lGP 332 (621)
+++++++|.+++-.|.||...+. +++++++++|+|.+-.-. ..+ ..+ +..+ +.+.|-=|.++.
T Consensus 166 ~~~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~ 245 (409)
T PLN02656 166 ADQNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIV 245 (409)
T ss_pred hccCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccC
Confidence 45678999999999999998763 345789999999986522 111 222 2223 677888999987
Q ss_pred Cc--cEEEEEc--------hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVR--------EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQK 402 (621)
Q Consensus 333 ~G--lg~livr--------~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~l 402 (621)
+| +|+++.. +++++++.. .. .....++....+++..+|+.-.+. -++...++.+++
T Consensus 246 pGlRiG~~i~~~~~~~~~~~~~~~~~~~----------~~---~~~~~~s~~~q~a~~~~l~~~~~~-~~~~~~~~~~~~ 311 (409)
T PLN02656 246 PGWRLGWFVTTDPSGSFRDPKIVERIKK----------YF---DILGGPATFIQAAVPTILEQTDES-FFKKTINILKQS 311 (409)
T ss_pred cceeEEEEEEeCcccccccHHHHHHHHH----------HH---hhhcCCCHHHHHHHHHHHhcCcHH-HHHHHHHHHHHH
Confidence 77 7888873 345544321 00 112234445555555555421011 255666677777
Q ss_pred HHHHHHHHHccC
Q psy8733 403 SVLLYQEIDNSD 414 (621)
Q Consensus 403 a~~L~e~L~~~~ 414 (621)
.+.+++.|+.++
T Consensus 312 r~~~~~~L~~~~ 323 (409)
T PLN02656 312 SDICCDRIKEIP 323 (409)
T ss_pred HHHHHHHHhhCC
Confidence 778888887764
No 199
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=98.56 E-value=1.4e-05 Score=87.24 Aligned_cols=127 Identities=15% Similarity=0.244 Sum_probs=85.7
Q ss_pred CCCCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC----ccccccc--ceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR----KFDVSKF--GVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~----pIDv~~~--gvl~asaqK~lGP~ 333 (621)
+++++++|.+..+.+.+|...|. +++++|+++|+|-+++ +|-. .++.... |++++| |.+|-.
T Consensus 183 i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~~s--K~lg~g 260 (396)
T PRK04073 183 ITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYILG--KALGGG 260 (396)
T ss_pred cccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCCEEEec--ccccCC
Confidence 44678899999988999998772 3568999999999988 4321 1122222 356654 999744
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|.++.++++.+.+... ....+++.+| ...++..++|+.+.+. + +.++.+++.+++++.|+
T Consensus 261 g~~ig~~~~~~~i~~~~~~~-----------~~~~t~~~~~-~~~aaa~aaL~~~~~~-~---l~~~~~~~~~~l~~~L~ 324 (396)
T PRK04073 261 VFPISCVAANRDILGVFTPG-----------SHGSTFGGNP-LACAVSIAALEVLEEE-K---LPERSLELGEYFKEQLK 324 (396)
T ss_pred CCcceEEEEcHHHHhhhcCC-----------CCCCCCCCCH-HHHHHHHHHHHHHHhc-C---HHHHHHHHHHHHHHHHH
Confidence 4 89999999987654320 1223454444 4455556889888765 4 34666777889999988
Q ss_pred ccC
Q psy8733 412 NSD 414 (621)
Q Consensus 412 ~~~ 414 (621)
+++
T Consensus 325 ~l~ 327 (396)
T PRK04073 325 EID 327 (396)
T ss_pred hhc
Confidence 763
No 200
>PLN02509 cystathionine beta-lyase
Probab=98.56 E-value=1.9e-06 Score=96.21 Aligned_cols=129 Identities=11% Similarity=0.078 Sum_probs=84.9
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccC-CCc--cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIG-PAG--ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lG-P~G--lg~liv 340 (621)
+++++++|++++..+.+|...|+ +++++|+++++|.+++.+....+++ ..|+++.|.+|+++ +.+ .|++++
T Consensus 214 i~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~ 293 (464)
T PLN02509 214 IGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAV 293 (464)
T ss_pred CCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCChhhcCCcEEEecCcccccCCCccceeEEEe
Confidence 56789999999999999999886 4568899999999998776433332 23599999999995 666 688887
Q ss_pred chhHH-hhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 341 REDLL-EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 341 r~~ll-~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
+++.+ +++.. +.. . .+ ...+.+..+.+...|+- ++.+.++..+.+..+.+.|++.+.+
T Consensus 294 ~~~~l~~~~~~-------~~~-~-~g---~~l~p~~A~l~lr~L~t------L~~R~~r~~~nA~~la~~L~~~p~V 352 (464)
T PLN02509 294 KGEKLAKEVYF-------LQN-S-EG---SGLAPFDCWLCLRGIKT------MALRIEKQQENARKIAMYLSSHPRV 352 (464)
T ss_pred ccHHHHHHHHH-------HHH-h-cC---CCcCHHHHHHHHhhhhh------HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 66543 22210 000 0 01 11222222222223332 4566777888888999999887743
No 201
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=98.55 E-value=2.2e-05 Score=85.41 Aligned_cols=127 Identities=13% Similarity=0.198 Sum_probs=87.4
Q ss_pred CCCCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCCCcc--ccc--c--cceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLSRKF--DVS--K--FGVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~~pI--Dv~--~--~gvl~asaqK~lGP~ 333 (621)
+.+++++|.+.+..+.+|...| + +++++|+++|+|.+++ +|..+. ..+ . -|++++| |+++-.
T Consensus 184 i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~--K~l~gg 261 (401)
T PRK00854 184 ITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIG--KALSGG 261 (401)
T ss_pred hCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEec--ccccCC
Confidence 4567999999999999999886 2 3568999999999998 766542 111 1 1355555 999422
Q ss_pred --ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 --GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 --Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
-+|.++.++++++.+.+. ....+++ .+....++..++|+.+.+. + +.++.+++.+++++.|.
T Consensus 262 ~~~ig~v~~~~~~~~~l~~~-----------~~~~t~~-~~~~~~aa~~a~L~~l~~~-~---~~~~~~~~~~~l~~~L~ 325 (401)
T PRK00854 262 FYPVSAVLSNSEVLGVLKPG-----------QHGSTFG-GNPLACAVARAALKVLTEE-G---MIENAAEMGAYFLEGLR 325 (401)
T ss_pred ccCeEEEEEcHHHHhcccCC-----------CCCCCCC-cCHHHHHHHHHHHHHHHHc-C---HHHHHHHHHHHHHHHHH
Confidence 278888999987654210 1123343 3555677788888888664 3 45677778888999888
Q ss_pred ccC
Q psy8733 412 NSD 414 (621)
Q Consensus 412 ~~~ 414 (621)
+++
T Consensus 326 ~~~ 328 (401)
T PRK00854 326 SIR 328 (401)
T ss_pred hhc
Confidence 764
No 202
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=98.53 E-value=1.9e-05 Score=85.12 Aligned_cols=128 Identities=13% Similarity=0.144 Sum_probs=78.9
Q ss_pred CCCceEEEEecccccccccccc-----ccc--cCCCcEEEecccccCCC---ccc-ccccc--eEEeccccccCCCc--c
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY-----IPD--SQGIPLVSDMSSNFLSR---KFD-VSKFG--VIIAGAQKNIGPAG--I 335 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~-----i~~--~~g~llvvDavSs~G~~---pID-v~~~g--vl~asaqK~lGP~G--l 335 (621)
++++++|++|+-.|.||...+. +.+ .+++++|+|-+=.-... ++. ++..+ +++.|-=|.+|.+| +
T Consensus 150 ~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~~vi~~~SfSK~~gl~GlRv 229 (364)
T PRK04781 150 ASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDNLAVLRTLSKAHALAAARI 229 (364)
T ss_pred ccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhhCCCEEEEecChhhccccccee
Confidence 5678999999999999999984 222 34789999987442221 112 13334 77888999999888 7
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHH---HHHHHHHHHHHHHHHHHHc
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLA---KMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~---~i~~r~~~la~~L~e~L~~ 412 (621)
|+++..+++++.+.... ..++ .+..... .++.++.+ |..+ ...++.++..+.+.+.|+.
T Consensus 230 Gy~v~~~~l~~~l~~~~-------------~~~~-~~~~~~~---~a~~~l~~-~~~~~~~~~~~~~~~~r~~l~~~L~~ 291 (364)
T PRK04781 230 GSLIANAELIAVLRRCQ-------------APYP-VPTPCAA---LAEQALSA-PALAVTARRVAEVRAERERLHAALAQ 291 (364)
T ss_pred eeeeCCHHHHHHHHhcc-------------CCCC-CCHHHHH---HHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999887664311 1111 2222222 22334432 2222 3333456666778888877
Q ss_pred cCCc
Q psy8733 413 SDKF 416 (621)
Q Consensus 413 ~~g~ 416 (621)
++|+
T Consensus 292 ~~~~ 295 (364)
T PRK04781 292 LPGV 295 (364)
T ss_pred CCCC
Confidence 6543
No 203
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=98.53 E-value=7.6e-07 Score=98.12 Aligned_cols=74 Identities=19% Similarity=0.180 Sum_probs=57.2
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccCCCc--cEEEEEc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIGPAG--ITVVIVR 341 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lGP~G--lg~livr 341 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+++.+.....++ ..|+++.|.+|++|++| +|.++++
T Consensus 139 l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~ 218 (418)
T TIGR01326 139 IDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVD 218 (418)
T ss_pred cCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhcCCchhcCCeEEEECccccccCCccceEEEEEe
Confidence 45678999999888999999986 4568899999999998664222222 13599999999998877 7888886
Q ss_pred hh
Q psy8733 342 ED 343 (621)
Q Consensus 342 ~~ 343 (621)
++
T Consensus 219 ~~ 220 (418)
T TIGR01326 219 GG 220 (418)
T ss_pred cc
Confidence 53
No 204
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=98.53 E-value=1.8e-06 Score=93.98 Aligned_cols=127 Identities=10% Similarity=0.098 Sum_probs=78.4
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccC-CCc--cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIG-PAG--ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lG-P~G--lg~liv 340 (621)
+++++++|++++-.+.+|...|+ +++++|+++|+|.+++.+....+++ ..|++++|.+|++| |.. .|+++.
T Consensus 131 i~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~ 210 (380)
T PRK06176 131 IKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTT 210 (380)
T ss_pred cCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccccCCccccCCCEEEecCceeccCCccceeeEEEe
Confidence 56789999998888999999986 4568899999999998654322222 23499999999996 543 555666
Q ss_pred ch-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 341 RE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQ--GGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 341 r~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~--gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
++ ++.+++.. +.. ... .+.+.... |+... ..++.+.+++.+.+..+-+.|++.+.+
T Consensus 211 ~~~~~~~~~~~-------~~~---~~G--~~~~~~~~--------~l~~~gl~tl~~R~~~~~~~a~~la~~L~~~p~v 269 (380)
T PRK06176 211 NNEALAQEIAF-------FQN---AIG--GVLGPQDS--------WLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKV 269 (380)
T ss_pred cHHHHHHHHHH-------HHH---Hhc--CCCCHHHH--------HHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 54 34343311 000 000 11111111 22223 134566666667777888888887643
No 205
>PRK12414 putative aminotransferase; Provisional
Probab=98.53 E-value=6.9e-06 Score=89.10 Aligned_cols=130 Identities=14% Similarity=0.202 Sum_probs=81.8
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC---CCcc-cc---ccc-c--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL---SRKF-DV---SKF-G--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G---~~pI-Dv---~~~-g--vl~asaqK~lG 331 (621)
+.+++++|++++..|+||...+. +++++++++|+|.+-.-. ..+. .+ ..+ + +++.|--|.+|
T Consensus 159 l~~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~ 238 (384)
T PRK12414 159 ITPRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYH 238 (384)
T ss_pred cCcccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEeccccccc
Confidence 44678999999999999998752 345789999999885421 1111 11 222 2 88889999999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|+++..+++.+++..... ...+ .++.+...++. +++.+......+.+..+++.+.+.+.
T Consensus 239 ~pGlRiG~~v~~~~l~~~l~~~~~-----------~~~~-~~s~~~q~a~~---~~l~~~~~~~~~~~~~~~~r~~l~~~ 303 (384)
T PRK12414 239 VTGWRVGYCLAPAELMDEIRKVHQ-----------FMVF-SADTPMQHAFA---EALAEPASYLGLGAFYQRKRDLLARE 303 (384)
T ss_pred CccceEEEEecCHHHHHHHHHHHh-----------heec-CCCcHHHHHHH---HHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 888 5999999988776532110 0112 22233333333 33332112344566677788888888
Q ss_pred HHccC
Q psy8733 410 IDNSD 414 (621)
Q Consensus 410 L~~~~ 414 (621)
|++.+
T Consensus 304 L~~~g 308 (384)
T PRK12414 304 LAGSR 308 (384)
T ss_pred HHhCC
Confidence 88763
No 206
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=98.52 E-value=2e-05 Score=84.62 Aligned_cols=127 Identities=13% Similarity=0.096 Sum_probs=82.5
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEeccccc-C--CCc---cccc----ccc--eEEeccccccC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNF-L--SRK---FDVS----KFG--VIIAGAQKNIG 331 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~-G--~~p---IDv~----~~g--vl~asaqK~lG 331 (621)
+++++|++++..|.||...+. +++++++++|+|.+... . ..+ ++.+ ..+ +++.|--|.+|
T Consensus 141 ~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~ 220 (357)
T TIGR03539 141 VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSN 220 (357)
T ss_pred cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccC
Confidence 468999999999999998873 34678999999988642 1 111 1111 112 78889999999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|.++.++++.+++... . ......++.....++.++|+. +. .++.+.++.+++.+.+++.
T Consensus 221 ~~G~R~G~~i~~~~~~~~~~~~-------~-----~~~~~~~~~~~q~~~~~~l~~--~~-~~~~~~~~~~~~~~~~~~~ 285 (357)
T TIGR03539 221 LAGYRAGFVAGDPALVAELLTV-------R-----KHAGLMVPAPVQAAMVAALGD--DG-HVAEQKARYAARRAQLKPA 285 (357)
T ss_pred CCceeEEEEecCHHHHHHHHHH-------H-----hhcccCCCHHHHHHHHHHcCC--HH-HHHHHHHHHHHHHHHHHHH
Confidence 888 68888888877654210 0 011123444455555555532 11 3566677777788888888
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|.+.
T Consensus 286 L~~~ 289 (357)
T TIGR03539 286 LEKA 289 (357)
T ss_pred HHHc
Confidence 8875
No 207
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=98.52 E-value=4.6e-05 Score=83.05 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=77.3
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---C-ccc---cccc-c-eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---R-KFD---VSKF-G-VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~-pID---v~~~-g-vl~asaqK~lGP 332 (621)
+++++++|.+|+-.|.||...+. +++++|+++|+|-+-.-.. . ... +... . +++.|-=|.+|.
T Consensus 165 ~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~ 244 (401)
T TIGR01264 165 IDEKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLV 244 (401)
T ss_pred hccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCC
Confidence 34568999999999999998873 3357899999998765221 1 112 2222 2 677888999998
Q ss_pred Cc--cEEEEEch------hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVRE------DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSV 404 (621)
Q Consensus 333 ~G--lg~livr~------~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~ 404 (621)
+| +|+++..+ +.++.+. .. ......++.....++..+|+--.+. =++.+.++.++..+
T Consensus 245 ~GlRiG~iv~~~~~~~~~~~~~~~~----------~~---~~~~~~~~~~~q~a~~~~l~~~~~~-~l~~~~~~~~~~r~ 310 (401)
T TIGR01264 245 PGWRLGWIIIHDRRGILRDIRDGLV----------KL---SQRILGPCTIVQGALPSILLRTPQE-YFDGTLSVLESNAM 310 (401)
T ss_pred ccceEEEEEecCcchhHHHHHHHHH----------HH---hhccCCCCcHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHH
Confidence 88 78888764 2222211 00 0011223333444444444210011 25566666777777
Q ss_pred HHHHHHHccCC
Q psy8733 405 LLYQEIDNSDK 415 (621)
Q Consensus 405 ~L~e~L~~~~g 415 (621)
++++.|+.++|
T Consensus 311 ~l~~~L~~~~~ 321 (401)
T TIGR01264 311 LCYGALAAVPG 321 (401)
T ss_pred HHHHHHHhCCC
Confidence 88888887654
No 208
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=98.51 E-value=5.8e-06 Score=88.05 Aligned_cols=125 Identities=11% Similarity=0.178 Sum_probs=82.5
Q ss_pred CceEEEEecccccccccccc-----c---cccCCCcEEEecccccCCCc--------cccccc-c-eEEeccccccCCCc
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----I---PDSQGIPLVSDMSSNFLSRK--------FDVSKF-G-VIIAGAQKNIGPAG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i---~~~~g~llvvDavSs~G~~p--------IDv~~~-g-vl~asaqK~lGP~G 334 (621)
++++|.++...++||...+. + ++++++++|+|-+.+..... ..++.. . +++.|--|.+|.+|
T Consensus 148 ~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 227 (363)
T PF00155_consen 148 RPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPG 227 (363)
T ss_dssp TEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGG
T ss_pred ccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeeccccccccc
Confidence 56899999999999998874 3 56789999999988875544 223333 2 88999999999888
Q ss_pred --cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHH---hhCCHHHHHHHHHHHHHHHHHH
Q psy8733 335 --ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIK---RQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 335 --lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~---~~gGl~~i~~r~~~la~~L~e~ 409 (621)
+|++++++++.+.+.. +. . .... +...-.++..++.--. +. ++++.++.+++.+.+++.
T Consensus 228 lRvG~i~~~~~~~~~l~~-------~~---~---~~~~-~~~~~~~~~~~l~~~~~~~~~--~~~~~~~l~~~~~~l~~~ 291 (363)
T PF00155_consen 228 LRVGYIVAPPELIERLRR-------FQ---R---SGLS-SSPMQAAAAAALSDPELVEKW--LEELRERLRENRDLLREA 291 (363)
T ss_dssp GTEEEEEEEHHHHHHHHH-------HH---H---HTTS-SHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhhh-------cc---c---cccc-cchhhHHHHHhhhcccccccc--cccchhhHHHHHHHHHHH
Confidence 8999998888776532 00 0 0111 2222223322332222 12 567778888888889998
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|++.
T Consensus 292 L~~~ 295 (363)
T PF00155_consen 292 LEEI 295 (363)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8876
No 209
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=98.49 E-value=5.6e-05 Score=81.01 Aligned_cols=78 Identities=15% Similarity=0.223 Sum_probs=55.9
Q ss_pred CCceEEEEecccccccccccc-----ccc--cCCCcEEEecccccCCC---ccc-ccccc--eEEeccccccCCCc--cE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPD--SQGIPLVSDMSSNFLSR---KFD-VSKFG--VIIAGAQKNIGPAG--IT 336 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~--~~g~llvvDavSs~G~~---pID-v~~~g--vl~asaqK~lGP~G--lg 336 (621)
+++++|++|+-.|.||...+. +.+ .+++++|+|-+-.-... ++. ++..+ +++.|-=|.+|.+| +|
T Consensus 153 ~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG 232 (357)
T PRK14809 153 DGERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLG 232 (357)
T ss_pred cCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhhe
Confidence 357899999999999999984 222 23788999998653321 111 12233 66677789999888 79
Q ss_pred EEEEchhHHhhhC
Q psy8733 337 VVIVREDLLEYAL 349 (621)
Q Consensus 337 ~livr~~ll~~~~ 349 (621)
+++.++++++++.
T Consensus 233 ~~~~~~~~~~~~~ 245 (357)
T PRK14809 233 YAVVPEEWADAYA 245 (357)
T ss_pred eeecCHHHHHHHH
Confidence 9999998887663
No 210
>PRK06348 aspartate aminotransferase; Provisional
Probab=98.49 E-value=1.6e-05 Score=86.12 Aligned_cols=132 Identities=12% Similarity=0.150 Sum_probs=83.3
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC---CCccc---ccc-cc--eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL---SRKFD---VSK-FG--VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G---~~pID---v~~-~g--vl~asaqK~lGP 332 (621)
+.+++++|++++-.|.||...+. +++++++++|+|-+-.-. ..... ++. .+ +++.|-=|.+|-
T Consensus 159 ~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l 238 (384)
T PRK06348 159 ITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAM 238 (384)
T ss_pred hCcCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCC
Confidence 34578899999889999998873 345789999999875422 11112 222 12 666777899997
Q ss_pred Cc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 333 ~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
+| +|+++..+++.+.+.. + . ....+ +++.....++..+++...+. ++.+.+..+++.+++++.|
T Consensus 239 ~GlRiG~~v~~~~~~~~~~~-------~---~-~~~~~-~~~~~~q~~~~~~l~~~~~~--~~~~~~~~~~r~~~~~~~L 304 (384)
T PRK06348 239 TGWRIGYVIAPDYIIETAKI-------I---N-EGICF-SAPTISQRAAIYALKHRDTI--VPLIKEEFQKRLEYAYKRI 304 (384)
T ss_pred ccccceeeecCHHHHHHHHH-------H---H-HhccC-CCCHHHHHHHHHHHhCcHHH--HHHHHHHHHHHHHHHHHHH
Confidence 77 7999998887765421 0 0 01112 33444445555555432222 4566777777778888888
Q ss_pred HccCC
Q psy8733 411 DNSDK 415 (621)
Q Consensus 411 ~~~~g 415 (621)
..+++
T Consensus 305 ~~~~~ 309 (384)
T PRK06348 305 ESIPN 309 (384)
T ss_pred hcCCC
Confidence 76643
No 211
>PRK07671 cystathionine beta-lyase; Provisional
Probab=98.47 E-value=3.3e-06 Score=91.85 Aligned_cols=128 Identities=13% Similarity=0.075 Sum_probs=81.4
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC--CcccccccceEEeccccccC-CCc--cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS--RKFDVSKFGVIIAGAQKNIG-PAG--ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~--~pIDv~~~gvl~asaqK~lG-P~G--lg~li 339 (621)
+++++++|++++-.+++|...|+ +++++|+++|+|.+.+.+. .|++. ..|+++.|.+|++| |.+ .|+++
T Consensus 131 i~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~p~~~-g~Divv~S~sK~l~G~~~~~~G~~v 209 (377)
T PRK07671 131 IRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSPISL-GADIVLHSATKYLGGHSDVVAGLVV 209 (377)
T ss_pred cCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccCChhhh-CCeEEEecCcccccCCccceeEEEE
Confidence 56789999999999999999886 4568899999999987443 44432 12599999999996 664 45566
Q ss_pred Ech-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 340 VRE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 340 vr~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
+++ ++.+++.. +.. ..-.+.+....+.+...++ -+..+.+++.+.+..|-+.|++.+++
T Consensus 210 ~~~~~l~~~~~~-------~~~-----~~g~~~~~~~a~l~~~~l~------tl~~R~~~~~~na~~la~~L~~~~~v 269 (377)
T PRK07671 210 VNSPELAEDLHF-------VQN-----STGGILGPQDSWLLLRGLK------TLGIRMEEHETNSRAIAEFLNNHPAV 269 (377)
T ss_pred eCcHHHHHHHHH-------HHH-----hhcCCCCHHHHHHHHcCcC------hHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 654 45554421 010 0012222222222222222 24556677778888888999887754
No 212
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=98.47 E-value=3.7e-05 Score=82.94 Aligned_cols=127 Identities=14% Similarity=0.118 Sum_probs=75.8
Q ss_pred CCCCceEEEEecccccccccccc-----ccc--cCCCcEEEecccccCCC----c--cc-cccc-c--eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPD--SQGIPLVSDMSSNFLSR----K--FD-VSKF-G--VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~--~~g~llvvDavSs~G~~----p--ID-v~~~-g--vl~asaqK~lGP 332 (621)
+++++++|++++..|.||...+. +.+ ..++++|+|.+-.-... + +. +++. + +++.|-=|.+|.
T Consensus 156 ~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l 235 (371)
T PRK05166 156 VARAPRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGL 235 (371)
T ss_pred hhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhc
Confidence 45578999999999999999984 222 24788999997542221 1 11 1222 2 677888999998
Q ss_pred Cc--cEEEEE-chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIV-REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 333 ~G--lg~liv-r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
+| +|++++ ++++.+.+... ...++ ++.....++..++. ..+-+++..+..+++.+++++.
T Consensus 236 ~GlRiG~~i~~~~~l~~~~~~~-------------~~~~~-~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~ 298 (371)
T PRK05166 236 AGLRVGYGLVSDPELVGLLDRV-------------RTPFN-VNGAAQAAALAALD---DEEHLAKGVALALAERERLKKE 298 (371)
T ss_pred chhheeeeecCCHHHHHHHHHh-------------ccCCC-CCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHH
Confidence 88 688776 45665544210 01122 23333333333332 2212555556666667778888
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|++.
T Consensus 299 L~~~ 302 (371)
T PRK05166 299 LAEM 302 (371)
T ss_pred HHHC
Confidence 8876
No 213
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=98.47 E-value=4.3e-05 Score=82.65 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=55.9
Q ss_pred CCceEEEEecccccccccccc-----ccc-cCCCcEEEecccccCCC--cc-cccccc--eEEeccccccCCCc--cEEE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPD-SQGIPLVSDMSSNFLSR--KF-DVSKFG--VIIAGAQKNIGPAG--ITVV 338 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~-~~g~llvvDavSs~G~~--pI-Dv~~~g--vl~asaqK~lGP~G--lg~l 338 (621)
+++++|++|+-.|.||...+. +.+ .+++++|+|-+-.-... .+ .+.+.+ +++.|-=|.+|.+| +|++
T Consensus 167 ~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~ 246 (374)
T PRK02610 167 PPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAAHRVGYA 246 (374)
T ss_pred CCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCcccceeee
Confidence 578999999999999999884 222 35899999987542211 11 122333 77888899999888 7889
Q ss_pred EEchhHHhhhC
Q psy8733 339 IVREDLLEYAL 349 (621)
Q Consensus 339 ivr~~ll~~~~ 349 (621)
+.++++++++.
T Consensus 247 v~~~~l~~~l~ 257 (374)
T PRK02610 247 IGHPELIAVLE 257 (374)
T ss_pred ecCHHHHHHHH
Confidence 98888877653
No 214
>PRK09082 methionine aminotransferase; Validated
Probab=98.46 E-value=8.1e-06 Score=88.54 Aligned_cols=130 Identities=10% Similarity=0.064 Sum_probs=81.0
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---C-cc---cccc-cc--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---R-KF---DVSK-FG--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~-pI---Dv~~-~g--vl~asaqK~lG 331 (621)
+.+++++|.+++..++||...+. +++++++++|+|.+-.... . .. .+.. .+ +++.|--|.+|
T Consensus 160 ~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~ 239 (386)
T PRK09082 160 ISPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYH 239 (386)
T ss_pred cCccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhcc
Confidence 45678999998888999987652 3467899999999753221 1 11 2222 22 67778899999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|+++..+++++.+... . ....+ +++.....++...++.-.+ -++++.+..+++.+.+++.
T Consensus 240 ~~G~RiG~iv~~~~l~~~~~~~-------~----~~~~~-~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~ 305 (386)
T PRK09082 240 VTGWKVGYCVAPAALSAEFRKV-------H----QYNTF-TVNTPAQLALADYLRAEPE--HYLELPAFYQAKRDRFRAA 305 (386)
T ss_pred chhhhhhhhhCCHHHHHHHHHH-------H----hhhcC-CCChHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHHHHH
Confidence 888 69999998887655321 0 00112 2333333343333331111 2556667777888888898
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|.+.
T Consensus 306 L~~~ 309 (386)
T PRK09082 306 LANS 309 (386)
T ss_pred HHhC
Confidence 8875
No 215
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=98.46 E-value=3.9e-05 Score=83.42 Aligned_cols=126 Identities=17% Similarity=0.162 Sum_probs=83.0
Q ss_pred CCCceEEEEecccccccccccc---------ccccCCCcEEEecccccCC---Ccc--ccccc--ceEEeccccccCC-C
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLS---RKF--DVSKF--GVIIAGAQKNIGP-A 333 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~---~pI--Dv~~~--gvl~asaqK~lGP-~ 333 (621)
.+++++|.+....+.+|+..|. +++++|+++|+|-+++-.. ..+ +.... |++.+| |++|+ -
T Consensus 181 ~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~t~s--K~l~~G~ 258 (398)
T PRK03244 181 DDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTLA--KGLGGGL 258 (398)
T ss_pred cCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCEEEEc--hhhhCCc
Confidence 3578899999888999998872 3568999999999986221 112 22222 366665 99972 2
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
.+|.++.++++.+.+.+. ....+++.++ ....+..++|+.+.+. ...++.+++.+++++.|+++
T Consensus 259 ~ig~~~~~~~~~~~~~~~-----------~~~~t~~~~~-~~~aaa~a~l~~~~~~----~~~~~~~~~~~~l~~~L~~~ 322 (398)
T PRK03244 259 PIGACLAFGPAADLLTPG-----------LHGSTFGGNP-VACAAALAVLDTIASE----GLLENAERLGEQLRAGIEAL 322 (398)
T ss_pred ccEEEEEcHHHHhhccCC-----------CCcCCCCCCH-HHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHhc
Confidence 389999999977644210 1223454443 4456666677766543 45677778888899999875
Q ss_pred C
Q psy8733 414 D 414 (621)
Q Consensus 414 ~ 414 (621)
+
T Consensus 323 ~ 323 (398)
T PRK03244 323 G 323 (398)
T ss_pred C
Confidence 3
No 216
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=98.46 E-value=0.00013 Score=78.41 Aligned_cols=128 Identities=16% Similarity=0.168 Sum_probs=79.6
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Cccc----ccccc--eEEeccccccCCC
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RKFD----VSKFG--VIIAGAQKNIGPA 333 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~pID----v~~~g--vl~asaqK~lGP~ 333 (621)
.+++++|.+|+-.|+||...+. +++++++++|+|.+-.-.. .+.. ++..+ +++.|-=|.+|.+
T Consensus 139 ~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~ 218 (354)
T PRK06358 139 KEEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIP 218 (354)
T ss_pred ccCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCc
Confidence 3468999999999999999873 2457899999998753221 1111 22334 7788999999977
Q ss_pred c--cEEEEEc-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVR-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 334 G--lg~livr-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
| +|+++.. +.+.+++.... . ..+.+...-.++..+++.- +. ++++.+..++..+.+++.|
T Consensus 219 G~RiG~lv~~~~~~~~~~~~~~-------------~-~~~~~~~~q~~~~~~l~~~-~~--~~~~~~~~~~~r~~l~~~L 281 (354)
T PRK06358 219 GLRLGYGLTSNKNLAEKLLQMR-------------E-PWSINTFADLAGQTLLDDK-EY--IKKTIQWIKEEKDFLYNGL 281 (354)
T ss_pred chhheeeecCCHHHHHHHHHhC-------------C-CCcchHHHHHHHHHHhccH-HH--HHHHHHHHHHHHHHHHHHH
Confidence 7 7778775 55655543211 0 1234444445555555310 11 3455566666777888888
Q ss_pred HccCC
Q psy8733 411 DNSDK 415 (621)
Q Consensus 411 ~~~~g 415 (621)
++++|
T Consensus 282 ~~~~~ 286 (354)
T PRK06358 282 SEFKG 286 (354)
T ss_pred hcCCC
Confidence 77654
No 217
>PLN00175 aminotransferase family protein; Provisional
Probab=98.45 E-value=9.5e-06 Score=89.17 Aligned_cols=131 Identities=10% Similarity=0.060 Sum_probs=85.8
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Ccc---cccc-cc--eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RKF---DVSK-FG--VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~pI---Dv~~-~g--vl~asaqK~lGP 332 (621)
+.+++++|++++-.|.||...+. +++++++++|+|-+-.-.. .+. .+.. .+ +++.|-=|.+|-
T Consensus 184 ~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~ 263 (413)
T PLN00175 184 FTSKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSL 263 (413)
T ss_pred cCcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccC
Confidence 45678999999999999998873 3457899999999754332 111 2222 23 667788899998
Q ss_pred Cc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 333 ~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
+| +|+++.++++.+.+.. .. .....+++.+.-+++..+|+.-.+ -++.+.++.+++.+.+++.|
T Consensus 264 ~G~RiG~~v~~~~l~~~l~~-------~~-----~~~~~~~s~~~Q~a~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~L 329 (413)
T PLN00175 264 TGWKIGWAIAPPHLTWGVRQ-------AH-----SFLTFATATPMQWAAVAALRAPES--YYEELKRDYSAKKDILVEGL 329 (413)
T ss_pred cchheeeeEeCHHHHHHHHH-------HH-----hhccCCCCHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHH
Confidence 88 7999999988765521 00 011123344444554455532111 25677778888888999999
Q ss_pred HccC
Q psy8733 411 DNSD 414 (621)
Q Consensus 411 ~~~~ 414 (621)
++.+
T Consensus 330 ~~~g 333 (413)
T PLN00175 330 KEVG 333 (413)
T ss_pred HHCC
Confidence 8763
No 218
>PRK07337 aminotransferase; Validated
Probab=98.44 E-value=1.3e-05 Score=86.85 Aligned_cols=129 Identities=9% Similarity=0.126 Sum_probs=79.5
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEeccc-ccCC--Ccccccccc---eEEeccccccCCCc-
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSS-NFLS--RKFDVSKFG---VIIAGAQKNIGPAG- 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavS-s~G~--~pIDv~~~g---vl~asaqK~lGP~G- 334 (621)
+++++++|.+++-.|.||...+. +++++++++|+|-+- .+.. .+...-.++ +.+.|..|.+|.+|
T Consensus 160 ~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~ 239 (388)
T PRK07337 160 WGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYFNMTGW 239 (388)
T ss_pred cCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhccCCEEEEEechhhcCCchh
Confidence 45688999999999999998873 235789999999552 2321 122222232 55678899999888
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHHH
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGG---LAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gG---l~~i~~r~~~la~~L~e~L 410 (621)
+|+++..+++++++..... ....+++.....++..++ .+. + +.+..++.+++.+++.+.|
T Consensus 240 RiG~~~~~~~l~~~l~~~~~------------~~~~~~s~~~q~~~~~~l---~~~-~~~~~~~~~~~~~~~r~~~~~~L 303 (388)
T PRK07337 240 RLGWLVVPEALVGTFEKLAQ------------NLFICASALAQHAALACF---EPD-TLAIYERRRAEFKRRRDFIVPAL 303 (388)
T ss_pred heeeeecCHHHHHHHHHHHH------------HhccCCChHHHHHHHHHh---ccC-chHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999888776532100 111122333333333333 221 2 3445566667777788888
Q ss_pred HccC
Q psy8733 411 DNSD 414 (621)
Q Consensus 411 ~~~~ 414 (621)
++.+
T Consensus 304 ~~~~ 307 (388)
T PRK07337 304 ESLG 307 (388)
T ss_pred HhcC
Confidence 7753
No 219
>PRK06290 aspartate aminotransferase; Provisional
Probab=98.43 E-value=5.3e-05 Score=83.29 Aligned_cols=129 Identities=15% Similarity=0.146 Sum_probs=82.9
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Cccc---ccc---cceEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RKFD---VSK---FGVIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~pID---v~~---~gvl~asaqK~lGP 332 (621)
+.+++++|++++-.|+||...+. +++++++++|+|-+-.-.. .+.. +.. ..+++.|-=|.+|.
T Consensus 176 ~~~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~ 255 (410)
T PRK06290 176 IKEKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNM 255 (410)
T ss_pred hcccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCC
Confidence 34578999999888999999983 3467899999998765332 2222 222 12888899999999
Q ss_pred Cc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGG-LAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 333 ~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gG-l~~i~~r~~~la~~L~e~ 409 (621)
+| +|+++.++++++.+..... ....+++ .....+ +..++.+. . ++.+.++.+++.+.+++.
T Consensus 256 ~GlRiG~ii~~~~l~~~l~~~~~-----------~~~~~~~-~~~q~a---a~~~l~~~-~~~~~~~~~~~~~~~~l~~~ 319 (410)
T PRK06290 256 TGWRLAFVVGNELIVKAFATVKD-----------NNDSGQF-IAIQKA---GIYALDHP-EITEKIREKYSRRLDKLVKI 319 (410)
T ss_pred chhheEeEEeCHHHHHHHHHHHh-----------ccccCCc-HHHHHH---HHHHhhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 99 7999999888765532110 0111221 222223 23333331 2 456667777778888888
Q ss_pred HHccC
Q psy8733 410 IDNSD 414 (621)
Q Consensus 410 L~~~~ 414 (621)
|.+.+
T Consensus 320 L~~~g 324 (410)
T PRK06290 320 LNEVG 324 (410)
T ss_pred HHhCC
Confidence 88763
No 220
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=98.42 E-value=5.7e-06 Score=98.46 Aligned_cols=138 Identities=14% Similarity=0.110 Sum_probs=86.6
Q ss_pred CCceEEEEeccccccccccc-c-----ccccCCCcEEEecccccCCCcc-cccccc--eEEecccccc------CCCccE
Q psy8733 272 PEASYLYYCDNETVDGVEFN-Y-----IPDSQGIPLVSDMSSNFLSRKF-DVSKFG--VIIAGAQKNI------GPAGIT 336 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p-~-----i~~~~g~llvvDavSs~G~~pI-Dv~~~g--vl~asaqK~l------GP~Glg 336 (621)
+++++|.+++.+| +|+..| + +++++|..+++|++|..+...+ +..++| +++++.||+| |+||+|
T Consensus 627 ~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G 705 (939)
T TIGR00461 627 DELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMG 705 (939)
T ss_pred CceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCccccCCCEEEecCCccCCCCCCCCCCCeE
Confidence 5899999999999 688776 4 3467899999999998755444 446665 9999999965 366679
Q ss_pred EEEEchhHHhhhCCCC-CceeeccccccC--CCccC--CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 337 VVIVREDLLEYALPIT-PTVFHFKINADN--NSVYN--TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 337 ~livr~~ll~~~~~~~-P~~ld~~~~~~~--~s~~~--TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
++.+|+++...+.... ....+... .+. +...+ +=+..........+..+-.+ |+.++.+....++.|+.+.|+
T Consensus 706 ~i~vr~~L~~~lPg~~v~~t~d~~g-req~Iga~s~~~~g~a~~~l~a~~yi~~lG~~-GL~~~a~~ailnAnYl~~rL~ 783 (939)
T TIGR00461 706 PIGVKSHLIPFLPKHDVVSMITGIG-GSKSIGSVSAAPYGSASILPISWMYIKMMGNE-GLPKASVVAILNANYMATRLK 783 (939)
T ss_pred EEEEhhhchhhcCCCcccccccCCC-CccccccccccccCcHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 9999987543332110 00011110 010 11111 11111111122233334344 788999999999999999998
Q ss_pred c
Q psy8733 412 N 412 (621)
Q Consensus 412 ~ 412 (621)
+
T Consensus 784 ~ 784 (939)
T TIGR00461 784 D 784 (939)
T ss_pred c
Confidence 7
No 221
>PRK09148 aminotransferase; Validated
Probab=98.41 E-value=2.8e-05 Score=85.10 Aligned_cols=130 Identities=13% Similarity=0.103 Sum_probs=81.8
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Cc----cccccc-c--eEEeccccccCC
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RK----FDVSKF-G--VIIAGAQKNIGP 332 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~p----IDv~~~-g--vl~asaqK~lGP 332 (621)
.+++++|.+++-.|.||...+. +++++++++|+|-+-.-.. .+ ..++.+ + +++.|--|.+|.
T Consensus 163 ~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~ 242 (405)
T PRK09148 163 IPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSM 242 (405)
T ss_pred cccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCC
Confidence 4678999999877899999984 3457899999998764321 11 122222 2 457888999999
Q ss_pred Cc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 333 ~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
+| +|+++.++++++++... . .....+++...-.++..+|+.-.+ =++.+.++.+++.+.+.+.|
T Consensus 243 pGlR~G~~v~~~~~i~~l~~~-------~-----~~~~~~~~~~~q~~~~~~L~~~~~--~~~~~~~~~~~~r~~l~~~L 308 (405)
T PRK09148 243 AGWRMGFAVGNERLIAALTRV-------K-----SYLDYGAFTPIQVAATAALNGPQD--CIAEMRELYKKRRDVLVESF 308 (405)
T ss_pred cchheeeeeCCHHHHHHHHHH-------H-----HHhccCCChHHHHHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHHH
Confidence 99 89999998888765321 0 011112233333333334431111 25666677777788888888
Q ss_pred HccC
Q psy8733 411 DNSD 414 (621)
Q Consensus 411 ~~~~ 414 (621)
++.+
T Consensus 309 ~~~~ 312 (405)
T PRK09148 309 GRAG 312 (405)
T ss_pred HHcC
Confidence 7753
No 222
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.39 E-value=4.4e-06 Score=92.42 Aligned_cols=140 Identities=11% Similarity=0.131 Sum_probs=84.4
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccccc--ceEEeccccccCCC--ccEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKF--GVIIAGAQKNIGPA--GITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~--gvl~asaqK~lGP~--Glg~liv 340 (621)
+++++++|++++..|++|...|+ +++++++++|+|.+++.+...-++ ++ |+++.|.+|++|.+ .+|.+++
T Consensus 140 i~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~~p~-~~gaDivv~S~tK~l~G~g~~~gG~v~ 218 (425)
T PRK06084 140 IDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCRPF-EHGADIVVHSLTKYIGGHGTSIGGIVV 218 (425)
T ss_pred hccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCChh-hcCCCEEEECchhcccccccceeEEEE
Confidence 45689999999999999999996 456889999999999876543333 33 49999999999633 3566666
Q ss_pred c-hhH-Hhhh-------CCCCCceeeccccccCC-------------CccC-CchHHHHHHHHHHHHHHHhhCCHHHHHH
Q psy8733 341 R-EDL-LEYA-------LPITPTVFHFKINADNN-------------SVYN-TPPTFVVHVIQRVFAWIKRQGGLAKMEQ 397 (621)
Q Consensus 341 r-~~l-l~~~-------~~~~P~~ld~~~~~~~~-------------s~~~-TP~v~~I~aL~~aL~~i~~~gGl~~i~~ 397 (621)
. .+. +... ....|+|++......-+ ..+| +.+-+..+. . +.....++.+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l---~---lrgl~tl~~R~~ 292 (425)
T PRK06084 219 DSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFL---I---LQGLETLALRME 292 (425)
T ss_pred eCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHH---H---HcCcCcHHHHHH
Confidence 4 321 1111 11123333211000000 0011 111111111 1 111124777888
Q ss_pred HHHHHHHHHHHHHHccCCc
Q psy8733 398 NSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 398 r~~~la~~L~e~L~~~~g~ 416 (621)
++.+.+..+.+.|++.+++
T Consensus 293 ~~~~na~~la~~L~~~p~v 311 (425)
T PRK06084 293 RHTENALKVARYLQQHPQV 311 (425)
T ss_pred HHHHHHHHHHHHHHhCCCc
Confidence 8888999999999998854
No 223
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=98.39 E-value=5.4e-06 Score=89.69 Aligned_cols=129 Identities=14% Similarity=0.143 Sum_probs=79.5
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccC--CCcccccccceEEeccccccC-CCc--cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFL--SRKFDVSKFGVIIAGAQKNIG-PAG--ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G--~~pIDv~~~gvl~asaqK~lG-P~G--lg~li 339 (621)
+++++++|++++-.+.+|...++ +++++|+++|+|.+.+.+ ..|++. ..++++.|..|+++ +.+ .|+++
T Consensus 133 i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~~~-g~di~i~S~sK~~~g~~d~~~G~iv 211 (366)
T PRK08247 133 ITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPLEE-GADIVIHSATKYLGGHNDVLAGLVV 211 (366)
T ss_pred cccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCchhc-CCcEEEeecceeccCCCceeeeEEe
Confidence 45689999998888888887775 456889999999997443 344321 23599999999996 544 45566
Q ss_pred Ec-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 340 VR-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 340 vr-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
.+ +++.+++.. +.. . .-.+++.+..+.+..+++. ++.+.++.++.++.+.+.|++.+++.
T Consensus 212 ~~~~~l~~~~~~-------~~~---~--~g~~~s~~~a~l~~~~l~t------l~~r~~~~~~~a~~l~~~L~~~p~v~ 272 (366)
T PRK08247 212 AKGQELCERLAY-------YQN---A--AGAVLSPFDSWLLIRGMKT------LALRMRQHEENAKAIAAFLNEQPGVT 272 (366)
T ss_pred cChHHHHHHHHH-------HHH---h--cCCCCChHHHHHHHhccCc------HHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 55 445444321 000 0 0011222222332233332 44555667888889999999887553
No 224
>PRK06434 cystathionine gamma-lyase; Validated
Probab=98.38 E-value=1.2e-05 Score=87.73 Aligned_cols=125 Identities=14% Similarity=0.084 Sum_probs=74.7
Q ss_pred CCC-CceEEEEecccccccccccc-----ccccCCCcEEEecccccCC--CcccccccceEEeccccccC-CCc--cEEE
Q psy8733 270 RDP-EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS--RKFDVSKFGVIIAGAQKNIG-PAG--ITVV 338 (621)
Q Consensus 270 i~~-~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~--~pIDv~~~gvl~asaqK~lG-P~G--lg~l 338 (621)
+++ ++++|++-+..+.++...|+ ++++++ ++||++++.+. .|++. ..|++++|++|+++ +.+ -|++
T Consensus 144 l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~~~pl~~-gaDivv~S~tK~i~G~~d~~gG~v 220 (384)
T PRK06434 144 FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYNQNPLDL-GADVVIHSATKYISGHSDVVMGVA 220 (384)
T ss_pred ecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCcccCCchhc-CCCEEEeecccccCCCCCceEEEE
Confidence 444 68999999988888988886 345666 57899965443 35542 13499999999995 664 3445
Q ss_pred EEch-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 339 IVRE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 339 ivr~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
+.++ ++.+++.. +.. ..+... .| ...+ ..+.-+ .-++.+.+++.+.+..+.+.|++.|.
T Consensus 221 v~~~~~~~~~~~~-------~~~--~~G~~~-~~--~~A~---l~~~gL---~tL~~R~~r~~~~a~~~a~~L~~~p~ 280 (384)
T PRK06434 221 GTNNKSIFNNLVE-------RRK--TLGSNP-DP--IQAY---LALRGL---KTLGLRMEKHNKNGMELARFLRDSKK 280 (384)
T ss_pred ecCcHHHHHHHHH-------HHH--hcCCCC-CH--HHHH---HHHhCC---CcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4533 34444321 000 001111 11 1111 112222 13677888888999999999998773
No 225
>PRK07050 cystathionine beta-lyase; Provisional
Probab=98.34 E-value=7.9e-06 Score=89.50 Aligned_cols=128 Identities=8% Similarity=0.036 Sum_probs=79.5
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC--CcccccccceEEeccccccC-CCc--cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS--RKFDVSKFGVIIAGAQKNIG-PAG--ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~--~pIDv~~~gvl~asaqK~lG-P~G--lg~li 339 (621)
+++++++|++++..+.+|...++ +++++|+++|+|.+++.|. .|++.. .|+.+.|..|+++ ..| .|.++
T Consensus 147 i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~~~l~~G-aDi~v~S~tK~~~g~~~~~gG~v~ 225 (394)
T PRK07050 147 IQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEHG-VDISVQALTKYQSGGSDVLMGATI 225 (394)
T ss_pred cCCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccccccCHHHcC-CeEEEEECCceecCCCCeeEEEEE
Confidence 56789999999888888888775 3567899999999998876 444442 2588999999995 554 45455
Q ss_pred E-chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 340 V-REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 340 v-r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
. ++++.+++.. +... .+. ...|.... .+++.++ .+..+.+++.+.+..|-+.|++.+++
T Consensus 226 ~~~~~~~~~~~~-------~~~~--~G~--~~~~~~a~----l~lr~l~---tl~~Rl~~~~~~a~~la~~L~~~p~v 285 (394)
T PRK07050 226 TADAELHAKLKL-------ARMR--LGI--GVSADDCS----LVLRGLP---SLQVRLAAHDRSALEVAEWLKARPEI 285 (394)
T ss_pred ECCHHHHHHHHH-------HHHh--cCC--CCCHHHHH----HHHcCCC---cHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 5 4566555421 1100 011 12222111 1222221 34455566666777888888887744
No 226
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=98.33 E-value=0.00022 Score=78.22 Aligned_cols=72 Identities=13% Similarity=0.197 Sum_probs=51.1
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC---CCc-cc---ccccc--eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL---SRK-FD---VSKFG--VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G---~~p-ID---v~~~g--vl~asaqK~lGP 332 (621)
+.++++.+.+|+-.|.||...+. +++++++++|+|-+-.-. ..+ .. ++..+ +++.|-=|.++.
T Consensus 167 ~~~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~ 246 (409)
T PLN00143 167 ADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMI 246 (409)
T ss_pred cccCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCC
Confidence 34578889898889999999883 345789999999875422 122 11 23333 677888999987
Q ss_pred Cc--cEEEEEc
Q psy8733 333 AG--ITVVIVR 341 (621)
Q Consensus 333 ~G--lg~livr 341 (621)
+| +|+++..
T Consensus 247 pGlRvG~~v~~ 257 (409)
T PLN00143 247 PGWGLGWLVTC 257 (409)
T ss_pred CccceEEEEee
Confidence 77 7888773
No 227
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=98.33 E-value=1.4e-05 Score=86.91 Aligned_cols=145 Identities=15% Similarity=0.151 Sum_probs=93.4
Q ss_pred ceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCc---c-----cccccceEEeccccccC-CCccEEEE
Q psy8733 274 ASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRK---F-----DVSKFGVIIAGAQKNIG-PAGITVVI 339 (621)
Q Consensus 274 t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~p---I-----Dv~~~gvl~asaqK~lG-P~Glg~li 339 (621)
+-+|..+...|.+|..=|+ +++++++.++|||+-.-...- + .++..|-+....|||++ |.+.|+++
T Consensus 195 p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l 274 (373)
T PF00282_consen 195 PFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLL 274 (373)
T ss_dssp EEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEE
T ss_pred ceeeeccCCCcccccccCHHHHhhhccccceeeeecccccccccccccccccccccccccccccchhhhhcCCccceeEE
Confidence 3378889999999999886 456899999999865431111 1 12334589999999998 99999999
Q ss_pred EchhH-HhhhCCCCCceeecccc-------ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 340 VREDL-LEYALPITPTVFHFKIN-------ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 340 vr~~l-l~~~~~~~P~~ld~~~~-------~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
+|++- +.......+.|+..... .......++= =+.+..+-.+++.+-.+ |+.++.++..++++++.+.|+
T Consensus 275 ~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR-~~~alk~w~~l~~~G~~-G~~~~i~~~~~~a~~l~~~l~ 352 (373)
T PF00282_consen 275 VRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSR-RFRALKLWATLKSLGRE-GYRERIRRCIELARYLADRLR 352 (373)
T ss_dssp ESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSG-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccchHHHhccChhhhcccccccccccccccccccccc-cchHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 99864 43332222334321110 0000111122 23445555677777666 899999999999999999999
Q ss_pred ccCCcccCc
Q psy8733 412 NSDKFYECP 420 (621)
Q Consensus 412 ~~~g~~~~~ 420 (621)
+.++|.+..
T Consensus 353 ~~~~~el~~ 361 (373)
T PF00282_consen 353 KDPRFELVN 361 (373)
T ss_dssp TSTTEEESS
T ss_pred hCCCEEEEc
Confidence 998877654
No 228
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=98.33 E-value=0.00012 Score=79.85 Aligned_cols=125 Identities=11% Similarity=0.213 Sum_probs=79.1
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cC--CCccc--cccc--ceEEeccccccCCC--
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FL--SRKFD--VSKF--GVIIAGAQKNIGPA-- 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G--~~pID--v~~~--gvl~asaqK~lGP~-- 333 (621)
++..+|.+-.....+|+..| + +++++|+++++|-+++ +| ...+. ...+ |++++| |.++-.
T Consensus 185 ~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~~g--K~l~~g~~ 262 (401)
T TIGR01885 185 PNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLLG--KALSGGVY 262 (401)
T ss_pred CCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEEEee--ccccCCCC
Confidence 34566666444445588876 2 4568999999999953 54 23322 2223 366665 999532
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
-+|.++.++++.+.+.. .. ...++. .+....++..++|+.+.+. + +.++.+++++++++.|.++
T Consensus 263 ~ig~v~~~~~i~~~~~~---~~--------~~~t~~-~~p~~~~aa~a~L~~i~~~-~---l~~~~~~~~~~~~~~L~~l 326 (401)
T TIGR01885 263 PVSAVLADDDVMLTIKP---GE--------HGSTYG-GNPLACAVAVAALEVLEEE-K---LAENAEKLGEIFRDQLKKL 326 (401)
T ss_pred CcEEEEEcHHHHhhccC---CC--------CCCCCC-CCHHHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHhc
Confidence 27888889888765432 00 122333 3445567778889988764 3 4467778889999999887
Q ss_pred C
Q psy8733 414 D 414 (621)
Q Consensus 414 ~ 414 (621)
+
T Consensus 327 ~ 327 (401)
T TIGR01885 327 P 327 (401)
T ss_pred c
Confidence 4
No 229
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=98.32 E-value=2.1e-05 Score=87.34 Aligned_cols=105 Identities=13% Similarity=0.241 Sum_probs=67.8
Q ss_pred ccccCCCcEEEecccccCCCcc--------cccccceEEeccccccC-CCccEEEEEc-hhHHhhhCCCCCceeeccccc
Q psy8733 293 IPDSQGIPLVSDMSSNFLSRKF--------DVSKFGVIIAGAQKNIG-PAGITVVIVR-EDLLEYALPITPTVFHFKINA 362 (621)
Q Consensus 293 i~~~~g~llvvDavSs~G~~pI--------Dv~~~gvl~asaqK~lG-P~Glg~livr-~~ll~~~~~~~P~~ld~~~~~ 362 (621)
+++++|+++|+|++.++++..+ ++...|+++++.||++. |-|-|+++.+ +++.+++... |.
T Consensus 230 la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~------y~--- 300 (444)
T TIGR03531 230 ICANYDIPHIVNNAYGLQSNKYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKS------YP--- 300 (444)
T ss_pred HHHHcCCEEEEECcCcCcChhhhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHh------cc---
Confidence 4568999999999999876432 12235688999999997 7776777674 5555554321 11
Q ss_pred cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 363 DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 363 ~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+....+| .. .+..++..+-.. |++++.++..++++++.+.|.++
T Consensus 301 --g~~~~s~---~~-~~~~~ll~~G~~-g~~~li~~~~~~a~~l~~~L~~l 344 (444)
T TIGR03531 301 --GRASASP---SL-DVLITLLSLGSK-GYLELLKERKEMYKYLKELLQKL 344 (444)
T ss_pred --CCCCChH---HH-HHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222 22 222233333334 78889999999999999999875
No 230
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=98.31 E-value=7.5e-06 Score=88.34 Aligned_cols=225 Identities=16% Similarity=0.170 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEE
Q psy8733 96 KINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADY 175 (621)
Q Consensus 96 ~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~ 175 (621)
..+++-++.+++++|.+. ++.+ +|||. ||-+....+++++||+|+++.- -|.+.+.
T Consensus 25 ~~~~~fE~~~a~~~g~~~---~~~~-~sgt~-----Al~~al~~l~~~~gdeVi~p~~----t~~~~~~----------- 80 (363)
T PF01041_consen 25 PYVEEFEKEFAEYFGVKY---AVAV-SSGTS-----ALHLALRALGLGPGDEVIVPAY----TFPATAS----------- 80 (363)
T ss_dssp HHHHHHHHHHHHHHTSSE---EEEE-SSHHH-----HHHHHHHHTTGGTTSEEEEESS----S-THHHH-----------
T ss_pred HHHHHHHHHHHHHhCCCe---EEEe-CChhH-----HHHHHHHhcCCCcCceEecCCC----cchHHHH-----------
Confidence 467778889999999763 5655 67898 5555556689999999999864 2322222
Q ss_pred EEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhccccccccc
Q psy8733 176 VVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPK 255 (621)
Q Consensus 176 v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~ 255 (621)
.....|.+.+..+.. + ..-.++++.+
T Consensus 81 ------------ai~~~G~~pv~~Di~----------~---------------------~~~~id~~~~----------- 106 (363)
T PF01041_consen 81 ------------AILWAGAEPVFVDID----------P---------------------ETLNIDPEAL----------- 106 (363)
T ss_dssp ------------HHHHTT-EEEEE-BE----------T---------------------TTSSB-HHHH-----------
T ss_pred ------------HHHHhccEEEEEecc----------C---------------------CcCCcCHHHH-----------
Confidence 223455544433311 0 0000112221
Q ss_pred CCCccCCCCccccCCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcc--cccccc---eEEec
Q psy8733 256 VSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKF--DVSKFG---VIIAG 325 (621)
Q Consensus 256 ~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pI--Dv~~~g---vl~as 325 (621)
+-.+++++++|.++| ..|...|+ +++++|+++|-|++|++|+.-= .+-.+| ++.+.
T Consensus 107 -----------~~~i~~~t~ai~~~h---~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf~ 172 (363)
T PF01041_consen 107 -----------EKAITPKTKAILVVH---LFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFGDIAIFSFH 172 (363)
T ss_dssp -----------HHHHHTTEEEEEEE----GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSSSEEEEESS
T ss_pred -----------HHHhccCccEEEEec---CCCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCCCceEecCC
Confidence 113678899999998 45777664 4678999999999999998432 223344 45555
Q ss_pred cccccC-CCccEEEEEchhH-HhhhCCCCC-cee--eccccc-c--CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHH
Q psy8733 326 AQKNIG-PAGITVVIVREDL-LEYALPITP-TVF--HFKINA-D--NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 397 (621)
Q Consensus 326 aqK~lG-P~Glg~livr~~l-l~~~~~~~P-~~l--d~~~~~-~--~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~ 397 (621)
..|.+. ..| |+|+.+++. .+++..... ... ...... . .+..+.-.+..+.. ++..|.+ ++.+.+
T Consensus 173 ~~K~i~~geG-G~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAi----gl~QL~~---L~~~~~ 244 (363)
T PF01041_consen 173 PTKIITTGEG-GAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAI----GLAQLKR---LDEIIA 244 (363)
T ss_dssp TTSSS-SSS--EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHH----HHHHHHT---HHHHHH
T ss_pred CCCCCcCCCC-eeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHH----HHHHHHH---hhhhHH
Confidence 669994 444 777776544 444432110 000 000000 0 01112222232222 2334443 577777
Q ss_pred HHHHHHHHHHHHHHccCCcccCc
Q psy8733 398 NSLQKSVLLYQEIDNSDKFYECP 420 (621)
Q Consensus 398 r~~~la~~L~e~L~~~~g~~~~~ 420 (621)
+-++.++.+.+.|..++++...+
T Consensus 245 ~R~~~a~~y~~~L~~~~~~~~~~ 267 (363)
T PF01041_consen 245 RRRENAQRYREALAGIPGIKPPP 267 (363)
T ss_dssp HHHHHHHHHHHHHTTGTTEEEEG
T ss_pred HHHHHHHHHHHHHhcCCCccccc
Confidence 88888999999999998765443
No 231
>PLN02263 serine decarboxylase
Probab=98.31 E-value=5.7e-05 Score=84.25 Aligned_cols=138 Identities=14% Similarity=0.115 Sum_probs=95.9
Q ss_pred CceEEEEecccccccccccc-----ccccCCC-----cEEEecccccCCCc-------ccccc-cceEEeccccccC-CC
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGI-----PLVSDMSSNFLSRK-------FDVSK-FGVIIAGAQKNIG-PA 333 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~-----llvvDavSs~G~~p-------IDv~~-~gvl~asaqK~lG-P~ 333 (621)
.+-+|..+...|.+|..=|+ +++++|+ .++|||+=+-...| +|+.. .|-+..+.|||++ |.
T Consensus 228 ~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~ 307 (470)
T PLN02263 228 KPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPM 307 (470)
T ss_pred CcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCCcCccEEEECCccccCCCc
Confidence 35677888899999999886 3456665 99999984322232 23322 3479999999998 99
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
|.|++++|+..++.+. ..+.|+.... ....+|=+......+-.+|+.+-.. |+.++.++..++++++.+.|.+.
T Consensus 308 ~cgvll~R~~~~~~~~-~~~~Yl~~~d----~ti~gSR~g~~al~lW~~L~~~G~~-G~~~~i~~~~~~A~~l~~~l~~~ 381 (470)
T PLN02263 308 PCGVQITRMEHINVLS-SNVEYLASRD----ATIMGSRNGHAPIFLWYTLNRKGYR-GFQKEVQKCLRNAHYLKDRLREA 381 (470)
T ss_pred CEEEEEEehhhHhhhc-cChHhhCCCC----CCcCCCCCcHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999987664432 2344543221 1222333333345566677777666 89999999999999999999988
Q ss_pred CCcc
Q psy8733 414 DKFY 417 (621)
Q Consensus 414 ~g~~ 417 (621)
+ +.
T Consensus 382 g-~~ 384 (470)
T PLN02263 382 G-IS 384 (470)
T ss_pred C-Ce
Confidence 5 54
No 232
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=98.30 E-value=0.00018 Score=78.84 Aligned_cols=138 Identities=11% Similarity=0.165 Sum_probs=80.5
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEeccccc----CCCcccc---ccc-c--eEEeccccccCCC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNF----LSRKFDV---SKF-G--VIIAGAQKNIGPA 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~----G~~pIDv---~~~-g--vl~asaqK~lGP~ 333 (621)
+++++|++|+-.|.||...+. +++++++++|.|-+-+- +..+..+ +.. + +++.|-=|.+|.+
T Consensus 175 ~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~p 254 (409)
T PRK07590 175 EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFT 254 (409)
T ss_pred cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCc
Confidence 578999999888999999884 34578999999985431 1112222 222 2 5677889999988
Q ss_pred c--cEEEEEchhHHhhhCCCC-Ccee-eccccccCCCccCCchHHHHHHHHHHHHH-HHhhCCHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPIT-PTVF-HFKINADNNSVYNTPPTFVVHVIQRVFAW-IKRQGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~-P~~l-d~~~~~~~~s~~~TP~v~~I~aL~~aL~~-i~~~gGl~~i~~r~~~la~~L~e 408 (621)
| +|+++..++++++..... .... .+. ......+++++.....++..+++- ..+ -++++.++.+++.+.+++
T Consensus 255 GlRiG~~i~~~~li~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~q~a~~~~l~~~~~~--~~~~~~~~~~~~r~~l~~ 330 (409)
T PRK07590 255 GTRCAYTVVPKELKGKTSDGEGVSLNSLWN--RRQSTKFNGVSYIVQRAAEAVYSPEGKA--QIKELIDYYMENAKIIRE 330 (409)
T ss_pred CceeEEEEcCHHHhhhccccchhhhHHHHH--HHHhhcccCcCHHHHHHHHHHhcCCcHH--HHHHHHHHHHHHHHHHHH
Confidence 8 799999988876321100 0000 000 001112233444444444444421 011 144556666777777888
Q ss_pred HHHcc
Q psy8733 409 EIDNS 413 (621)
Q Consensus 409 ~L~~~ 413 (621)
.|++.
T Consensus 331 ~L~~~ 335 (409)
T PRK07590 331 GLESA 335 (409)
T ss_pred HHHhc
Confidence 88775
No 233
>PLN02231 alanine transaminase
Probab=98.29 E-value=0.00051 Score=78.35 Aligned_cols=130 Identities=14% Similarity=0.095 Sum_probs=77.3
Q ss_pred CceEEEEecccccccccccc--------ccccCCCcEEEecccccC----CCcc-ccc-----------ccc-eEEeccc
Q psy8733 273 EASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL----SRKF-DVS-----------KFG-VIIAGAQ 327 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G----~~pI-Dv~-----------~~g-vl~asaq 327 (621)
+++++.+++-.|.||...+. +++++++++|+|-+=.-. ..+. .+. ... +.+.|-=
T Consensus 271 ~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~S 350 (534)
T PLN02231 271 TVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVS 350 (534)
T ss_pred CeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccC
Confidence 68889999888999999873 356789999999653321 1111 111 112 5566889
Q ss_pred ccc-CCCc--cEEEEE---chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH-------HH---HhhCC
Q psy8733 328 KNI-GPAG--ITVVIV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA-------WI---KRQGG 391 (621)
Q Consensus 328 K~l-GP~G--lg~liv---r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~-------~i---~~~gG 391 (621)
|.+ |-+| +|.+++ .+++.+++.. .. +...++++..-.+...+++ .+ .++
T Consensus 351 K~~~g~pGlRiGy~~~~~~~~~l~~~l~k-------~~------~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~-- 415 (534)
T PLN02231 351 KGYYGECGKRGGYMEVTGFTSDVREQIYK-------VA------SVNLCSNISGQILASLVMSPPKPGDESYESYMAE-- 415 (534)
T ss_pred cccccCCccceEEEEEecCCHHHHHHHHH-------HH------hhhcCCChHHHHHHHHHhCCCCCCcchHHHHHHH--
Confidence 976 7777 577765 5677665421 00 1111333333333333441 11 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 392 LAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 392 l~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
.+++.+..+++++.+++.|++++|+.
T Consensus 416 ~~~i~~~~~~r~~~l~~~L~~~~gi~ 441 (534)
T PLN02231 416 KDGILSSLARRAKTLEDALNSLEGVT 441 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 34567778888899999998876554
No 234
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=98.29 E-value=0.00018 Score=78.06 Aligned_cols=129 Identities=10% Similarity=0.016 Sum_probs=78.0
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC---C-C----ccccccc-c--eEEeccccccC
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL---S-R----KFDVSKF-G--VIIAGAQKNIG 331 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G---~-~----pIDv~~~-g--vl~asaqK~lG 331 (621)
.++++++++|+-.|.||...+. +++++++++|+|-+=.-. . . -.+++.. + +++.|-=|.+|
T Consensus 163 ~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g 242 (388)
T PRK07366 163 LAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYN 242 (388)
T ss_pred cccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccC
Confidence 4568999999888999999884 345789999999653211 1 1 1122222 2 56788899999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|.++.++++++++..... ....++++... .++.+++..-.+ =++.+.++.+++.+.+.+.
T Consensus 243 ~~GlRiG~~v~~~~li~~l~~~~~-----------~~~~~~~~~~~-~~a~~~l~~~~~--~l~~~~~~~~~~r~~l~~~ 308 (388)
T PRK07366 243 MGGFRIGFAIGNAQLIQALRQVKA-----------VVDFNQYRGIL-NGAIAALTGPQA--TVQQTVQIFRQRRDAFINA 308 (388)
T ss_pred CcchhheehcCCHHHHHHHHHHHh-----------hcccCCCHHHH-HHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHH
Confidence 777 7888888888776532110 11123322111 122222211111 2566677777777888888
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|+++
T Consensus 309 L~~~ 312 (388)
T PRK07366 309 LHQI 312 (388)
T ss_pred HHHC
Confidence 8776
No 235
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=98.29 E-value=0.00027 Score=76.75 Aligned_cols=125 Identities=17% Similarity=0.217 Sum_probs=77.8
Q ss_pred CCCCceEEEEecccccccccc-cc--------ccccCCCcEEEecccc-cCC--Cccccccc----ceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEF-NY--------IPDSQGIPLVSDMSSN-FLS--RKFDVSKF----GVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~-p~--------i~~~~g~llvvDavSs-~G~--~pIDv~~~----gvl~asaqK~lGP~ 333 (621)
+++++++|.+..+...+|+.. +. +++++|+++|+|-+++ +|. ..+..+.+ |++.+ -|.+| +
T Consensus 172 l~~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~--sK~l~-~ 248 (389)
T PRK01278 172 ITPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMAV--AKGIG-G 248 (389)
T ss_pred hCCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEEEE--ehhcc-C
Confidence 345789999998877778443 31 4568999999999987 332 11111222 24444 48887 4
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|.++.++++.+.+.. .....+++ .|.....+..++|+.+.+. ...++.+++.+++++.++
T Consensus 249 G~~ig~~~~~~~~~~~~~~-----------~~~~~t~~-~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~l~ 312 (389)
T PRK01278 249 GFPLGACLATEEAAKGMTP-----------GTHGSTYG-GNPLAMAVGNAVLDVILAP----GFLDNVQRMGLYLKQKLE 312 (389)
T ss_pred CcceEEEEEcHHHHhccCC-----------CCCCCCCC-ccHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHH
Confidence 5 8899999887654421 01123443 4456677777888888654 334455666666777666
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
.+
T Consensus 313 ~l 314 (389)
T PRK01278 313 GL 314 (389)
T ss_pred HH
Confidence 53
No 236
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=98.29 E-value=0.00011 Score=80.36 Aligned_cols=74 Identities=15% Similarity=0.289 Sum_probs=54.7
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----Ccccc---ccc-c--eEEeccccccCCC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKFDV---SKF-G--VIIAGAQKNIGPA 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pIDv---~~~-g--vl~asaqK~lGP~ 333 (621)
+++++|++|+-.|.||...+. +++++++++|+|-+-+-.. .+..+ +.. + +.+.|-=|.+|.+
T Consensus 172 ~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~p 251 (402)
T TIGR03542 172 PKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFT 251 (402)
T ss_pred CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCC
Confidence 578999999999999999883 2457899999999765321 22222 232 2 5577778999988
Q ss_pred c--cEEEEEchhHH
Q psy8733 334 G--ITVVIVREDLL 345 (621)
Q Consensus 334 G--lg~livr~~ll 345 (621)
| +|+++.+++++
T Consensus 252 GlRiG~~i~~~~l~ 265 (402)
T TIGR03542 252 GVRLGWTVVPKELT 265 (402)
T ss_pred CcceEEEEecHHHh
Confidence 8 79999988875
No 237
>PRK08068 transaminase; Reviewed
Probab=98.28 E-value=0.00023 Score=77.20 Aligned_cols=130 Identities=10% Similarity=0.096 Sum_probs=80.6
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC---C-Ccccc---cc-c--ceEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL---S-RKFDV---SK-F--GVIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G---~-~pIDv---~~-~--gvl~asaqK~lG 331 (621)
+.+++++|++|+-.|.||+..+. +++++++++|+|-+-.-. . .+..+ .+ . .+++.|-=|.+|
T Consensus 164 ~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g 243 (389)
T PRK08068 164 VAEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFN 243 (389)
T ss_pred ccccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccC
Confidence 34578999999767999999984 345789999999875321 1 22221 11 1 267778889999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQ-GGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~-gGl~~i~~r~~~la~~L~e 408 (621)
.+| +|+++.++++++++..... ....++++..... +..++.+. .-++.+.++.+++.+.+.+
T Consensus 244 ~~GlRiG~~~~~~~l~~~l~~~~~-----------~~~~~~~~~~q~~----~~~~l~~~~~~~~~~~~~~~~~r~~~~~ 308 (389)
T PRK08068 244 MAGWRVAFAVGNESVIEAINLLQD-----------HLFVSLFGAIQDA----AIEALLSDQSCVAELVARYESRRNAFIS 308 (389)
T ss_pred CccceeEeEecCHHHHHHHHHHHh-----------hccCCCChHHHHH----HHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 999 8999999988876532111 1112333322222 22333221 0145666777777778888
Q ss_pred HHHccC
Q psy8733 409 EIDNSD 414 (621)
Q Consensus 409 ~L~~~~ 414 (621)
.|++++
T Consensus 309 ~L~~~g 314 (389)
T PRK08068 309 ACREIG 314 (389)
T ss_pred HHHHCC
Confidence 887763
No 238
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=98.28 E-value=0.00022 Score=77.31 Aligned_cols=237 Identities=14% Similarity=0.165 Sum_probs=141.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhC-CCCCCEEEEEcCCcchhhhHHHHHHh
Q psy8733 58 GPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLN-VPNNYKILFLQGGGTGMFAAVAMNLI 136 (621)
Q Consensus 58 GPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~-~p~~yeI~f~~gggT~~~~a~alNll 136 (621)
-|-..|+.+++++.+.+.. .||-++- -..+.++.+++..+ .+.+ .|+. ..|+++
T Consensus 32 nP~gp~~~~~~~~~~~~~~-----------~~rYPd~--~~~~l~~a~a~~~~~~~~~-~V~~-gnGsde---------- 86 (356)
T COG0079 32 NPYGPPPKVIEAIRAALDK-----------LNRYPDP--DYRELRAALAEYYGVVDPE-NVLV-GNGSDE---------- 86 (356)
T ss_pred CCCCCCHHHHHHHHHHHHh-----------hccCCCC--cHHHHHHHHHHHhCCCCcc-eEEE-cCChHH----------
Confidence 3455568889988887642 3444433 47788999999999 4443 5554 466777
Q ss_pred hhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCC
Q psy8733 137 SSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNR 216 (621)
Q Consensus 137 a~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~ 216 (621)
.++.++..+..+||++++..++.-... ..|+..|...+..+..
T Consensus 87 ---------------------~i~~l~~~~~~~gd~vl~~~Ptf~~Y~--~~a~~~g~~~~~v~~~-------------- 129 (356)
T COG0079 87 ---------------------LIELLVRAFVEPGDTVLIPEPTFSMYE--IAAQLAGAEVVKVPLK-------------- 129 (356)
T ss_pred ---------------------HHHHHHHHhhcCCCEEEEcCCChHHHH--HHHHhcCCeEEEeccc--------------
Confidence 233345566677777777666433332 2455666543322210
Q ss_pred CCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc----
Q psy8733 217 DPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY---- 292 (621)
Q Consensus 217 ~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~---- 292 (621)
. |.. +.+++ ...+.+++++|++|+=.|.||...+.
T Consensus 130 ----------------~-~~~--d~~~~----------------------~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~ 168 (356)
T COG0079 130 ----------------E-FRL--DLDAI----------------------LAAIRDKTKLVFLCNPNNPTGTLLPREELR 168 (356)
T ss_pred ----------------c-ccc--CHHHH----------------------HHhhhcCCCEEEEeCCCCCCCCCCCHHHHH
Confidence 0 111 00110 01244579999999999999999884
Q ss_pred -ccc--cCCCcEEEecccc-cCCC-cccc-cccc--eEEeccccccCCCc--cEEEEEchhHHhhhCCCCCceeeccccc
Q psy8733 293 -IPD--SQGIPLVSDMSSN-FLSR-KFDV-SKFG--VIIAGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINA 362 (621)
Q Consensus 293 -i~~--~~g~llvvDavSs-~G~~-pIDv-~~~g--vl~asaqK~lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~ 362 (621)
+.+ ..++++|||-+=. |... -+++ ...+ ++.=+-=|.+|-+| +|+++.++++++.+....+
T Consensus 169 ~l~~~~~~~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~~l~~vr~--------- 239 (356)
T COG0079 169 ALLEALPEGGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVRP--------- 239 (356)
T ss_pred HHHHhCCCCcEEEEeCchhhcCCchhhhhccCCCCEEEEEecHHhhhcchhceeeccCCHHHHHHHHHhcC---------
Confidence 211 1278999996421 1110 1111 1233 77778889999888 7999999999887654322
Q ss_pred cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 363 DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 363 ~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++.-|..+.++..++|+-- +. ++...++..+-.+++++.|+.++
T Consensus 240 -----p~~v~~~a~~aa~aal~~~-~~--~~~~~~~~~~~r~rl~~~l~~~~ 283 (356)
T COG0079 240 -----PFNVSSPALAAAIAALRDA-DY--LEESVERIREERERLYAALKALG 283 (356)
T ss_pred -----CCCCCHHHHHHHHHHcccH-HH--HHHHHHHHHHHHHHHHHHHHhCC
Confidence 2222333444444444332 22 56667777778889999999886
No 239
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=98.27 E-value=0.0001 Score=87.99 Aligned_cols=140 Identities=11% Similarity=0.141 Sum_probs=97.4
Q ss_pred EEEEecccccccccccc--c---cccCCCcEEEecccccCCCcccccccc--eEEecccccc-----CCCccEEEEEchh
Q psy8733 276 YLYYCDNETVDGVEFNY--I---PDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-----GPAGITVVIVRED 343 (621)
Q Consensus 276 ~V~~thnET~tGv~~p~--i---~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-----GP~Glg~livr~~ 343 (621)
...+..+.+..|.+.|+ + +++.|+++++++-...+....+..+|| +++.++|++. |-|+.|++.+|++
T Consensus 196 ~~v~~q~Pn~~G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~ 275 (939)
T TIGR00461 196 FGCLLQYPATDGSILDYKQLIDALHSHKSLVSVAADLMALTLLTPPGHYGADIVLGSSQRFGVPMGYGGPHAAFFAVKDE 275 (939)
T ss_pred EEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechHHhCCcCCHHHcCCcEEeeCCCccCCCCCCCCCceeeeeecHh
Confidence 46667788888999885 3 457899999999999999999999887 8888888764 3567999999999
Q ss_pred HHhhhCCCCC----------ce-eeccccccC-CCccCCchHHHHHHHHH---H--HHHHHhhCCHHHHHHHHHHHHHHH
Q psy8733 344 LLEYALPITP----------TV-FHFKINADN-NSVYNTPPTFVVHVIQR---V--FAWIKRQGGLAKMEQNSLQKSVLL 406 (621)
Q Consensus 344 ll~~~~~~~P----------~~-ld~~~~~~~-~s~~~TP~v~~I~aL~~---a--L~~i~~~gGl~~i~~r~~~la~~L 406 (621)
+..++....- .| +.+...... +..-.|.|+-...+|.+ + +.++-.+ |+.++.++...++.+|
T Consensus 276 l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~-GL~~iA~~~~~~a~~l 354 (939)
T TIGR00461 276 YNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPK-GLKNIARRIHSLTSIL 354 (939)
T ss_pred hHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHH
Confidence 8876643211 11 101110011 12225766554444433 4 4555556 8999999999999999
Q ss_pred HHHHHccCCcc
Q psy8733 407 YQEIDNSDKFY 417 (621)
Q Consensus 407 ~e~L~~~~g~~ 417 (621)
.+.|.+.+ +.
T Consensus 355 ~~~L~~~G-~~ 364 (939)
T TIGR00461 355 ANGLENDP-HE 364 (939)
T ss_pred HHHHHhCC-Cc
Confidence 99998854 53
No 240
>PRK08175 aminotransferase; Validated
Probab=98.26 E-value=0.0002 Score=78.02 Aligned_cols=129 Identities=12% Similarity=0.089 Sum_probs=80.3
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----Cccc---ccc-cc--eEEeccccccCCC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKFD---VSK-FG--VIIAGAQKNIGPA 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pID---v~~-~g--vl~asaqK~lGP~ 333 (621)
+++++|++++-.|.||...+. +++++|+++|+|.+-.-.. .+.. +.. .+ +.+.|.=|.+|.+
T Consensus 163 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~p 242 (395)
T PRK08175 163 PKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMA 242 (395)
T ss_pred CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCc
Confidence 478999998778899998884 3457899999998653221 1111 222 23 5578889999988
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|+++.++++++++... .. ....+ ++.....++..+++...+ -++.+.++.+++.+++++.|+
T Consensus 243 GlRiG~~~~~~~l~~~~~~~-------~~----~~~~~-~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~L~ 308 (395)
T PRK08175 243 GWRIGFMVGNPELVSALARI-------KS----YHDYG-TFTPLQVAAIAALEGDQQ--CVRDIAEQYKRRRDVLVKGLH 308 (395)
T ss_pred chhheeeeCCHHHHHHHHHH-------Hh----hcccC-CCcHHHHHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 8 69999998888765321 00 00112 222233333333432111 256667777788888888888
Q ss_pred ccC
Q psy8733 412 NSD 414 (621)
Q Consensus 412 ~~~ 414 (621)
..+
T Consensus 309 ~~~ 311 (395)
T PRK08175 309 EAG 311 (395)
T ss_pred HcC
Confidence 763
No 241
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=98.23 E-value=0.00061 Score=72.76 Aligned_cols=124 Identities=12% Similarity=0.131 Sum_probs=77.1
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCC--Cccc-ccccc--eEEeccccccCCCc--cEEEEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS--RKFD-VSKFG--VIIAGAQKNIGPAG--ITVVIV 340 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~--~pID-v~~~g--vl~asaqK~lGP~G--lg~liv 340 (621)
+++++.+|+-.|.||...+. +. ++++++|+|-+-.-.. ..++ +...+ +++.|-=|.+|.+| +|+++.
T Consensus 138 ~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~ 216 (335)
T PRK14808 138 EGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVS 216 (335)
T ss_pred CCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhccCcccceEEEEe
Confidence 46899999999999999884 23 4689999998743221 1122 22343 77788899999888 699999
Q ss_pred chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 341 REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 341 r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++++.+++.... ..++ .+.....++..+++... . +++..++.++..+++++.|++.+
T Consensus 217 ~~~~~~~l~~~~-------------~~~~-~~~~~q~a~~~~l~~~~-~--~~~~~~~~~~~r~~l~~~L~~~g 273 (335)
T PRK14808 217 SEKFIDAYNRVR-------------LPFN-VSYVSQMFAKVALDHRE-I--FEERTKFIVEERERMKSALREMG 273 (335)
T ss_pred CHHHHHHHHHhc-------------CCCC-CCHHHHHHHHHHHhCHH-H--HHHHHHHHHHHHHHHHHHHHHCC
Confidence 998887653211 0122 23333444455554321 1 23333444455567778777763
No 242
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=98.18 E-value=0.00047 Score=73.40 Aligned_cols=124 Identities=16% Similarity=0.050 Sum_probs=77.4
Q ss_pred CceEEEEecccccccccccc-----c---cccCCCcEEEecccccCCC---cccccccc--eEEeccccccCCCc--cEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----I---PDSQGIPLVSDMSSNFLSR---KFDVSKFG--VIIAGAQKNIGPAG--ITV 337 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i---~~~~g~llvvDavSs~G~~---pIDv~~~g--vl~asaqK~lGP~G--lg~ 337 (621)
+++++.+|.-.|.||...+. + ++++++++|+|-+-.-... ...+...+ +++.|-=|.+|.+| +|+
T Consensus 124 ~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~gl~GlRiG~ 203 (330)
T PRK05664 124 SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFFGLAGARLGF 203 (330)
T ss_pred CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeeccccccCCCcceEE
Confidence 56777777777999999884 2 2467899999976432221 12233333 78889999999888 899
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
++.++++.+++.... . ..+.+....+++..+|+... -.+.+.++.++..+.+.+.|++.
T Consensus 204 ~v~~~~l~~~~~~~~-------------~-~~~~~~~~~~~~~~~L~~~~---~~~~~~~~~~~~r~~l~~~L~~~ 262 (330)
T PRK05664 204 VLAEPALLRALAELL-------------G-PWTVSGPTRWLAQAALADTP---WQRRQRERLLAASQRLAALLRRH 262 (330)
T ss_pred EEeCHHHHHHHHHhc-------------C-CCCCCHHHHHHHHHHHhChH---HHHHHHHHHHHHHHHHHHHHHHC
Confidence 999988887653211 0 11122233344444443211 13455666666777888888775
No 243
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=98.18 E-value=3.7e-05 Score=83.40 Aligned_cols=127 Identities=14% Similarity=0.148 Sum_probs=80.4
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccC--CCcccccccceEEeccccccC-CCc--cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFL--SRKFDVSKFGVIIAGAQKNIG-PAG--ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G--~~pIDv~~~gvl~asaqK~lG-P~G--lg~li 339 (621)
+++++++|++++-.|.+|...|+ +++++|+++|+|.+.+.+ ..|++. ..|+++.|.+|++| +.. -|+++
T Consensus 133 i~~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~~pl~~-gaDivv~S~tK~l~g~~d~~gG~v~ 211 (364)
T PRK07269 133 IEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIEL-GADIVLHSATKYLSGHNDVLAGVVV 211 (364)
T ss_pred cCcCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCchhh-CCcEEEecCceeccCCCcccceEEE
Confidence 56789999999999999998886 456889999999985433 344321 12499999999996 443 35556
Q ss_pred Ec-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 340 VR-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 340 vr-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
.+ +++.+++.. +.. ..+ .+++.+..+.+...|+ -++.+.+++++.+..+.+.|++.++
T Consensus 212 ~~~~~l~~~~~~-------~~~--~~G---~~~s~~~a~l~~~~L~------tL~~r~~~~~~na~~~a~~L~~~p~ 270 (364)
T PRK07269 212 TNDLELYEKLFY-------NLN--TTG---AVLSPFDSYLLMRGLK------TLSLRMERSTANAQEVVAFLKKSPA 270 (364)
T ss_pred eCcHHHHHHHHH-------HHH--HhC---CCCCHHHHHHHHcCCC------cHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 64 445554421 000 001 1222222222112221 3677778888888889899988764
No 244
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=98.16 E-value=0.00052 Score=74.31 Aligned_cols=125 Identities=18% Similarity=0.281 Sum_probs=78.3
Q ss_pred CCCCceEEEEeccccccccc-ccc--------ccccCCCcEEEecccc-cCCC--ccccccc----ceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVE-FNY--------IPDSQGIPLVSDMSSN-FLSR--KFDVSKF----GVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~-~p~--------i~~~~g~llvvDavSs-~G~~--pIDv~~~----gvl~asaqK~lGP~ 333 (621)
+.+++++|.+..+.+.+|+. .+. +++++|+++|+|-+++ +|.. ....+.+ +++.+| |.+| +
T Consensus 179 i~~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~t~s--K~~~-~ 255 (396)
T PRK02627 179 ITDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIMTLA--KGLG-G 255 (396)
T ss_pred cCCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEEEEc--chhh-C
Confidence 45678999998887777843 331 4568999999999987 4321 1122222 356555 9998 4
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|.++.++++.+.+... ....+++ .+....++..++|+.+.+. + +.++.+++.+.+++.|.
T Consensus 256 G~rig~~~~~~~~~~~~~~~-----------~~~~t~~-~~~~~~~aa~~~l~~~~~~-~---~~~~~~~~~~~~~~~l~ 319 (396)
T PRK02627 256 GVPIGAVLAKEKVADVFTPG-----------DHGSTFG-GNPLACAAALAVIEIIEEE-G---LLENAAEVGEYLRAKLR 319 (396)
T ss_pred CcccEEEEEcHHHHhccCCC-----------CCCCCCC-CCHHHHHHHHHHHHHHhhc-c---HHHHHHHHHHHHHHHHH
Confidence 5 89999998877644210 1123343 3445667777788877654 3 34556666666766665
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
++
T Consensus 320 ~~ 321 (396)
T PRK02627 320 EL 321 (396)
T ss_pred HH
Confidence 53
No 245
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=98.15 E-value=2e-06 Score=93.23 Aligned_cols=98 Identities=23% Similarity=0.319 Sum_probs=82.6
Q ss_pred hhhHHHHHhhcccccc-cCCcEEeeecHhHhhhcCCC-CC-ceeeeeec---ccC-CCccCCCchhHHHHHHHHHHHHHh
Q psy8733 446 AFFFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPI-TP-TVFHFKIN---ADN-NSVYNTPPTFVVHVIQRVFAWIKR 518 (621)
Q Consensus 446 ~~~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~-~p-~~~~y~~~---~~~-~s~~nTP~~~~iy~~~~vl~~~~~ 518 (621)
.+..|+++.|.||+|| |.|++++.+|++++++.... .| .+||++.+ .++ ++++.|||+--||-+...|+-|++
T Consensus 181 ~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~ 260 (383)
T COG0075 181 EWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILE 260 (383)
T ss_pred hcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5668999999999998 99999999999999885432 34 56665443 333 899999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhccC
Q psy8733 519 QGGLAKMEQNSLQKSVLLYQEIDNSD 544 (621)
Q Consensus 519 ~gg~~~~~~~~~~ka~~lY~~id~~~ 544 (621)
.| +++.-+|-++.++.+.+.+++-.
T Consensus 261 EG-le~r~~RH~~~~~a~r~~~~alG 285 (383)
T COG0075 261 EG-LEARIARHRRLAEALRAGLEALG 285 (383)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHcC
Confidence 98 99999999999998888887643
No 246
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=98.13 E-value=8.9e-05 Score=80.57 Aligned_cols=127 Identities=13% Similarity=0.128 Sum_probs=79.0
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC-----Cccc-------c--cccc--eEEecc
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS-----RKFD-------V--SKFG--VIIAGA 326 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~-----~pID-------v--~~~g--vl~asa 326 (621)
.+++++|++++-.|+||...+. +++++++++|+|-+=.-.. .+.. + +..+ +++.|-
T Consensus 163 ~~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~ 242 (393)
T TIGR03538 163 WRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSL 242 (393)
T ss_pred hhcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecc
Confidence 3578999999999999999883 3457899999998754221 1111 1 1233 788899
Q ss_pred ccccCCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q psy8733 327 QKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSV 404 (621)
Q Consensus 327 qK~lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~ 404 (621)
=|.+|.+| +|+++.++++++++.. +.. ....+++.....++.+++.. +. -++...++.+++.+
T Consensus 243 SK~~~~~GlRvG~~i~~~~l~~~~~~-------~~~-----~~~~~~~~~~q~~~~~~l~~--~~-~~~~~~~~~~~~~~ 307 (393)
T TIGR03538 243 SKRSNLPGLRSGFVAGDAEILKAFLR-------YRT-----YHGCAMPIPTQLASIAAWND--EQ-HVRENRALYREKFA 307 (393)
T ss_pred hhhcCCcccceEEEecCHHHHHHHHH-------HHH-----hhccCcCHHHHHHHHHHhcC--hH-HHHHHHHHHHHHHH
Confidence 99988777 7888888888766531 110 01112233333333333321 11 35666677777777
Q ss_pred HHHHHHHc
Q psy8733 405 LLYQEIDN 412 (621)
Q Consensus 405 ~L~e~L~~ 412 (621)
.+.+.|..
T Consensus 308 ~~~~~L~~ 315 (393)
T TIGR03538 308 AVLEILGQ 315 (393)
T ss_pred HHHHHHHh
Confidence 78787765
No 247
>PRK08636 aspartate aminotransferase; Provisional
Probab=98.13 E-value=0.0011 Score=72.35 Aligned_cols=129 Identities=14% Similarity=0.122 Sum_probs=77.6
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Cc-c---ccccc-c--eEEeccccccCC
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RK-F---DVSKF-G--VIIAGAQKNIGP 332 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~p-I---Dv~~~-g--vl~asaqK~lGP 332 (621)
.++++++.+|+-.|+||...+. +++++++++|+|-+-+-.. .+ . .++.. + +.+.|-=|.+|.
T Consensus 173 ~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 252 (403)
T PRK08636 173 SPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNM 252 (403)
T ss_pred cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCC
Confidence 3578999999768999999884 3467899999998744221 11 1 22222 3 346789999997
Q ss_pred Cc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 333 ~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
+| +|+++.++++++++... .. ....+++....+ ++..+++.-.+ -++.+.+..+++.+.+.+.|
T Consensus 253 ~GlRiG~iv~~~~li~~~~~~-------~~----~~~~~~~~~~q~-~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L 318 (403)
T PRK08636 253 AGWRVGFVVGNKKLVGALKKI-------KS----WLDYGMFTPIQV-AATIALDGDQS--CVEEIRETYRKRRDVLIESF 318 (403)
T ss_pred ccceeeeeeCCHHHHHHHHHH-------HH----HhcccCChHHHH-HHHHHHhCcHH--HHHHHHHHHHHHHHHHHHHH
Confidence 77 78888888887655320 00 011223222222 22233321111 25566666777777788888
Q ss_pred Hcc
Q psy8733 411 DNS 413 (621)
Q Consensus 411 ~~~ 413 (621)
...
T Consensus 319 ~~~ 321 (403)
T PRK08636 319 ANA 321 (403)
T ss_pred HHC
Confidence 765
No 248
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=98.12 E-value=0.0009 Score=71.67 Aligned_cols=125 Identities=14% Similarity=0.095 Sum_probs=76.7
Q ss_pred CceEEEEecccccccccccc-----cc---ccCCCcEEEecccccCCC--cc-cccccc--eEEeccccccCCCc--cEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IP---DSQGIPLVSDMSSNFLSR--KF-DVSKFG--VIIAGAQKNIGPAG--ITV 337 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~---~~~g~llvvDavSs~G~~--pI-Dv~~~g--vl~asaqK~lGP~G--lg~ 337 (621)
+++.+.+|+-.|.||...+. +. +.++.++|+|=+-.-... ++ .+.+.+ +++.|-=|.+|.+| +|+
T Consensus 130 ~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfSK~~gl~GlRiGy 209 (339)
T PRK06959 130 ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSVGKFFGLAGVRAGF 209 (339)
T ss_pred cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecChhhcCCcchheEE
Confidence 34678888888999999884 22 246788888976432221 11 121223 77888899999888 699
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++.++++++++....+ .++ .+.....++.++|+ +..=.+.+.++.++..+++.+.|++++
T Consensus 210 ~v~~~~li~~l~~~~~-------------~~~-vs~~~q~a~~~~L~---~~~~~~~~~~~~~~~r~~l~~~L~~~g 269 (339)
T PRK06959 210 VLAAPALLAALRDALG-------------AWT-VSGPARHAVRAAFA---DAAWQAAMRERLAADGARLAALLRAHG 269 (339)
T ss_pred EecCHHHHHHHHHhcC-------------CCC-CcHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999998876643111 111 22333344444442 210134556667777778888888763
No 249
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=98.09 E-value=0.0028 Score=69.41 Aligned_cols=126 Identities=11% Similarity=0.154 Sum_probs=84.7
Q ss_pred ceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCc---------ccc--cccceEEeccccccCCCccEE
Q psy8733 274 ASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRK---------FDV--SKFGVIIAGAQKNIGPAGITV 337 (621)
Q Consensus 274 t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~p---------IDv--~~~gvl~asaqK~lGP~Glg~ 337 (621)
.++|..-.+=...|..-|+ +++++++.++||=+-++|..= +.+ ++.+++..+--|.||-.| |+
T Consensus 172 ~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G-g~ 250 (388)
T COG0156 172 RKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSG-GY 250 (388)
T ss_pred ceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcccC-ce
Confidence 4556655555667888886 456899999999988887643 122 233588899999999554 56
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCcc-CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVY-NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~-~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+..+..+.+.+....+. ..| .+.|.....+..++|+.+.+. ....++.++++..++..+...+
T Consensus 251 v~g~~~~~d~L~~~ar~-----------~ifStalpP~~aaa~~~al~~l~~~---~~~r~~L~~~~~~~~~~~~~~~ 314 (388)
T COG0156 251 IAGSAALIDYLRNRARP-----------FIFSTALPPAVAAAALAALRILEEG---PERRERLQELAAFFRSLLKALG 314 (388)
T ss_pred eeCcHHHHHHHHHhCCc-----------eeccCCCCHHHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHhcC
Confidence 66666666554332222 222 244556677888999999864 5667778888888886666544
No 250
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=98.08 E-value=0.00027 Score=75.46 Aligned_cols=77 Identities=19% Similarity=0.326 Sum_probs=56.4
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC--Cccc-ccccc--eEEeccccccCCCc--cEEEE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS--RKFD-VSKFG--VIIAGAQKNIGPAG--ITVVI 339 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~--~pID-v~~~g--vl~asaqK~lGP~G--lg~li 339 (621)
++++++.+++-.|.||...+. +. ++++++|+|.+-.-.. ..+. ++..+ +++.|-=|.+|.+| +|+++
T Consensus 139 ~~~~~v~~~~P~NPtG~~~~~~~l~~i~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv 217 (337)
T PRK03967 139 KNASAVFICSPNNPTGNLQPEEEILKVL-ETGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAI 217 (337)
T ss_pred cCCCEEEEeCCCCCCCCCCCHHHHHHHH-hcCCEEEEECchhhhcccchHHHHhhCCCEEEEecchHhhcchhhhheeee
Confidence 467889999999999999884 33 4689999999764221 1111 12223 77789999999888 89999
Q ss_pred EchhHHhhhC
Q psy8733 340 VREDLLEYAL 349 (621)
Q Consensus 340 vr~~ll~~~~ 349 (621)
.++++.+++.
T Consensus 218 ~~~~~i~~~~ 227 (337)
T PRK03967 218 ANEEIIDALY 227 (337)
T ss_pred cCHHHHHHHH
Confidence 9988887653
No 251
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=98.07 E-value=0.00075 Score=71.82 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=56.9
Q ss_pred CCceEEEEecccccccccccc-----c---cccCCCcEEEecccccCCC----c-ccc-cccc--eEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----I---PDSQGIPLVSDMSSNFLSR----K-FDV-SKFG--VIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i---~~~~g~llvvDavSs~G~~----p-IDv-~~~g--vl~asaqK~lGP~G- 334 (621)
.++++|++|+-.|+||...+. + ++++++++|+|-+-.-... + ... +..+ +++.|-=|.+|.+|
T Consensus 121 ~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~Gl 200 (332)
T PRK06425 121 YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPSL 200 (332)
T ss_pred cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecHHhcCCchh
Confidence 378899999999999999884 2 3467999999986442211 1 111 2334 66678899999889
Q ss_pred -cEEEEEchhHHhhhC
Q psy8733 335 -ITVVIVREDLLEYAL 349 (621)
Q Consensus 335 -lg~livr~~ll~~~~ 349 (621)
+|+++..+++++++.
T Consensus 201 RiGy~v~~~~li~~l~ 216 (332)
T PRK06425 201 RIGYIATDDYNMKISR 216 (332)
T ss_pred hheeeecCHHHHHHHH
Confidence 699999999887664
No 252
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=98.07 E-value=0.00043 Score=76.31 Aligned_cols=126 Identities=11% Similarity=0.076 Sum_probs=76.3
Q ss_pred CCCceEEEEe-cccccccccccc--------ccccC-CCcEEEecccccCC-----Ccccccccc-eEEeccccccCCCc
Q psy8733 271 DPEASYLYYC-DNETVDGVEFNY--------IPDSQ-GIPLVSDMSSNFLS-----RKFDVSKFG-VIIAGAQKNIGPAG 334 (621)
Q Consensus 271 ~~~t~~V~~t-hnET~tGv~~p~--------i~~~~-g~llvvDavSs~G~-----~pIDv~~~g-vl~asaqK~lGP~G 334 (621)
++++++++++ .-.|+||...+. +++++ ++++|+|-+-+-.. .++..+.-. +++.|-=|.+| +|
T Consensus 209 ~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~-~G 287 (431)
T PRK15481 209 AQGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWALIRSVSKALG-PD 287 (431)
T ss_pred hcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCEEEEeeeccccC-CC
Confidence 3467888887 778999999884 34556 89999996533111 112211112 77888899999 68
Q ss_pred --cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHHHH
Q psy8733 335 --ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGG----LAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 335 --lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gG----l~~i~~r~~~la~~L~e 408 (621)
+|+++..+++.+++.... ..... ..+.....++..+| .+ |. ++.+.+..+++.+.+.+
T Consensus 288 lRiG~~i~~~~~~~~~~~~~-----------~~~~~-~~s~~~q~a~~~~l---~~-~~~~~~l~~~~~~~~~~r~~~~~ 351 (431)
T PRK15481 288 LRLAFVASDSATSARLRLRL-----------NSGTQ-WVSHLLQDLVYACL---TD-PEYQARLAQARLFYAQRRQKLAR 351 (431)
T ss_pred ceeEEEeCCHHHHHHHHHHH-----------hcccc-CCCHHHHHHHHHHH---hC-ccHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888776552100 00111 23334444444443 32 22 45666777777778888
Q ss_pred HHHcc
Q psy8733 409 EIDNS 413 (621)
Q Consensus 409 ~L~~~ 413 (621)
.|++.
T Consensus 352 ~L~~~ 356 (431)
T PRK15481 352 ALQQY 356 (431)
T ss_pred HHHHc
Confidence 88775
No 253
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=98.05 E-value=3e-05 Score=83.34 Aligned_cols=267 Identities=14% Similarity=0.148 Sum_probs=160.1
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccc---cHHHHHHHH-HHHHHHHHHhCCCCCCEEEEEcCCcc
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHR---SADYTKINN-DTQAALRELLNVPNNYKILFLQGGGT 125 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shr---s~~f~~i~~-~ar~~La~Ll~~p~~yeI~f~~gggT 125 (621)
+....+.|.=--.++.|++++...+++-...|. .++| +-++.+.+| .+.++.++|||+.-. +| -+-||+
T Consensus 26 ~~~ieLIASEN~~S~aV~~A~gS~ltnKYAEGy----PgkRyYgGce~VD~vE~laierak~LFga~~a-nV--QPhSGs 98 (413)
T COG0112 26 REHIELIASENFTSPAVMEAQGSDLTNKYAEGY----PGKRYYGGCEYVDEVEELAIERAKKLFGAEYA-NV--QPHSGS 98 (413)
T ss_pred hhceeeeeccccCCHHHHHHHhhhhhhccccCC----CCccccCCCeeHHHHHHHHHHHHHHHhCCCcc-cc--CCCCch
Confidence 356777888788899999999999988555554 3444 445666554 467899999999753 33 355677
Q ss_pred hhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccc
Q psy8733 126 GMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 126 ~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
. .|+-.+..=+++||.|+-+. | ..|.|..+-..-.++.+|. ...+
T Consensus 99 ~------AN~av~~All~pGDtimgm~-------------l-~~GGHltHg~~v~~sG~~~----------~~v~----- 143 (413)
T COG0112 99 Q------ANQAVYLALLQPGDTIMGLD-------------L-SHGGHLTHGSPVNFSGKLF----------NVVS----- 143 (413)
T ss_pred H------HHHHHHHHHcCCCCeEeccc-------------C-CCCCcccCCCCCCccceeE----------EeEe-----
Confidence 6 35544433456666665432 1 2232222211111111110 0000
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~ 285 (621)
.+++. +... +|-|+ .+......++|++..-..-.+
T Consensus 144 ------Y~vd~----------et~~--------IDyD~---------------------~~k~a~e~kPK~ii~G~SaY~ 178 (413)
T COG0112 144 ------YGVDP----------ETGL--------IDYDE---------------------VEKLAKEVKPKLIIAGGSAYS 178 (413)
T ss_pred ------ccccc----------ccCc--------cCHHH---------------------HHHHHHHhCCCEEEECccccc
Confidence 00000 0000 11111 111223446676654432222
Q ss_pred ccccccc-----ccccCCCcEEEeccccc-----CCCcccccccceEEecccccc-CCCccEEEEEchhHHhhhCC-CCC
Q psy8733 286 DGVEFNY-----IPDSQGIPLVSDMSSNF-----LSRKFDVSKFGVIIAGAQKNI-GPAGITVVIVREDLLEYALP-ITP 353 (621)
Q Consensus 286 tGv~~p~-----i~~~~g~llvvDavSs~-----G~~pIDv~~~gvl~asaqK~l-GP~Glg~livr~~ll~~~~~-~~P 353 (621)
-..|. |+++.|+.+++||+--. |..|=++...|++.++.||.| ||.|=-++.-++++.+++.. ..|
T Consensus 179 --r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~AdvVTtTTHKTlrGPrGG~Il~~~eel~kkin~aVFP 256 (413)
T COG0112 179 --RPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTLRGPRGGIILTNDEELAKKINSAVFP 256 (413)
T ss_pred --cccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCccceEeCCcccCCCCCCceEEEeccHHHHHHhhhhcCC
Confidence 22232 56688999999997643 444555666789999999999 89985444444577666543 122
Q ss_pred ceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 354 TVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 354 ~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
..-+-|-...|+|.+-|++...+- +.+...++..+.++.|-+.|.+.| +.+.
T Consensus 257 ------------g~qggpl~HviAakaVa~~Eal~p-~fk~Ya~qVv~NAkaLAe~l~~~G-~~vv 308 (413)
T COG0112 257 ------------GLQGGPLMHVIAAKAVAFKEALEP-EFKEYAKQVVKNAKALAEALKERG-FKVV 308 (413)
T ss_pred ------------ccCCChHHHHHHHHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHcC-CeEe
Confidence 334567788899999999999887 788999999999999999998864 6544
No 254
>PRK07049 methionine gamma-lyase; Validated
Probab=98.05 E-value=9.1e-05 Score=82.07 Aligned_cols=126 Identities=9% Similarity=0.114 Sum_probs=82.4
Q ss_pred CCceEEEEecccccccccccc-----cccc------CCCcEEEeccc--ccCCCcccccccceEEeccccccC-CCc--c
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDS------QGIPLVSDMSS--NFLSRKFDVSKFGVIIAGAQKNIG-PAG--I 335 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~------~g~llvvDavS--s~G~~pIDv~~~gvl~asaqK~lG-P~G--l 335 (621)
+++++|+++.-.|.||...|. +++. +++++|+|-+= -+...|++.. .++++.|.-|.+| .+| +
T Consensus 173 ~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl~~g-~divv~S~SK~~gG~~glr~ 251 (427)
T PRK07049 173 GRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPLEHG-ADLSVYSLTKYVGGHSDLVA 251 (427)
T ss_pred CCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCccccC-CCEEEEcCceeecCCCCcEE
Confidence 579999999999999999885 3333 68999999872 2223444332 2588889999997 666 6
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
|+++.++++.+++... . ...-.+.+.+..+.+..+|+. +..+.+++.+.+..+.+.|++.++
T Consensus 252 G~vv~~~~l~~~l~~~-------~-----~~~g~~ls~~~a~l~~r~L~t------l~~R~~~~~~~a~~la~~L~~~p~ 313 (427)
T PRK07049 252 GAVLGRKALIRQVRAL-------R-----SAIGTQLDPHSCWMLGRSLET------LVLRMERANRNARAVAEFLRDHPK 313 (427)
T ss_pred EEEECCHHHHHHHHHH-------H-----HhcCCCCCHHHHHHHHcCCCh------HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7777777776655310 0 011123444444444444432 445556667888899999998875
Q ss_pred c
Q psy8733 416 F 416 (621)
Q Consensus 416 ~ 416 (621)
+
T Consensus 314 V 314 (427)
T PRK07049 314 V 314 (427)
T ss_pred c
Confidence 4
No 255
>PLN02624 ornithine-delta-aminotransferase
Probab=98.04 E-value=0.00053 Score=76.99 Aligned_cols=124 Identities=13% Similarity=0.236 Sum_probs=80.2
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCC----Cccccccc--ceEEeccccccCC--C
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLS----RKFDVSKF--GVIIAGAQKNIGP--A 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~----~pIDv~~~--gvl~asaqK~lGP--~ 333 (621)
+++++|.+....+.+|+..| + +++++|+++|+|-+++ +|. ...+.... |+++.| |.+|- -
T Consensus 223 ~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~ls--K~lggG~~ 300 (474)
T PLN02624 223 DRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILG--KALGGGVI 300 (474)
T ss_pred CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEEec--ccccCCCC
Confidence 45777888666677798887 2 4568999999999987 431 12222222 366665 99862 3
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
-+|.++.++++.+.+.+ . ...++++. |.....+..++|+.+.+. + +.++..++.+++++.|+++
T Consensus 301 pigav~~~~~i~~~~~~---~--------~~~~T~~g-~pl~~aaa~aaLe~l~~~-~---l~~~~~~~~~~l~~~L~~l 364 (474)
T PLN02624 301 PVSAVLADKDVMLCIKP---G--------EHGSTFGG-NPLASAVAMAALQVVQDE-K---LAERSAKLGQELRDQLQKI 364 (474)
T ss_pred cceeeeecHHHHhHhcc---C--------CcCCCCCC-CHHHHHHHHHHHHHHHhc-h---HHHHHHHHHHHHHHHHHHH
Confidence 47888888887654422 0 12345543 445567777788888764 3 4456667777788877764
No 256
>KOG3846|consensus
Probab=98.03 E-value=4.5e-05 Score=79.37 Aligned_cols=282 Identities=14% Similarity=0.205 Sum_probs=179.1
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccH--HHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSA--DYTKINNDTQAALRELLNVPNNYKILFLQGGGTGM 127 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~--~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~ 127 (621)
+.+|+-+-.-..+|..+.+.|.+++..|...+.- +|.+. .+..+=+.+-..++.+.|+.++ ||..+ ++=|.
T Consensus 67 ~~iYlcGNSLGLmPK~t~~~~~~eLDkWak~av~----gH~~GkvPW~~~De~il~l~~~iVGA~e~-Evavm-NsLTv- 139 (465)
T KOG3846|consen 67 PVIYLCGNSLGLMPKSTRNSINAELDKWAKCAVE----GHFKGKVPWVSIDEPILPLLAPIVGAQEN-EVAVM-NSLTV- 139 (465)
T ss_pred CeEEEeccccccCchhhHhHHHHHHHHHHhhhhh----cccccccceeecchhhhhhhhhhccCCch-hhhhH-hhhhh-
Confidence 4578888888899999999999999999876543 34321 2444556677889999999876 78876 44444
Q ss_pred hhHHHHHHhhhcc--CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccc
Q psy8733 128 FAAVAMNLISSSM--NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 128 ~~a~alNlla~~~--~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
-+|.+-.+. .-+.-.+|++-.+ +| .+.+|. ....++-+|.... -
T Consensus 140 ----Nlh~Ll~sFyKPTekR~KILlE~k----aF-----------------PSDhYA--iesQ~~lhG~~~e-~------ 185 (465)
T KOG3846|consen 140 ----NLHSLLISFYKPTEKRFKILLEKK----AF-----------------PSDHYA--IESQCKLHGISPE-N------ 185 (465)
T ss_pred ----HHHHHHHHhcCCcchhhhhhhccC----CC-----------------CchHHH--HHhhhhhcCCChH-H------
Confidence 333322111 1223333333222 11 011121 1123344453200 0
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCc-cccCC-CCCceEEEEeccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQ-STWNR-DPEASYLYYCDNE 283 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~-~~l~i-~~~t~~V~~thnE 283 (621)
+.| ...| ++|. .+....|+ +.+.. .+...+|+++.+.
T Consensus 186 sm~-~ieP-------------------------------REGE---------etlRteDILd~IEkngDeiA~v~fSGvq 224 (465)
T KOG3846|consen 186 SMI-QIEP-------------------------------REGE---------ETLRTEDILDTIEKNGDEIALVCFSGVQ 224 (465)
T ss_pred heE-Eecc-------------------------------cccc---------cchhHHHHHHHHHhcCCeEEEEEeecce
Confidence 000 0000 0000 00011111 11112 2457888999999
Q ss_pred ccccccccc--cc---ccCCCcEEEecccccCCCcccccccc--eEEecccccc--CCCccEEEEEchhHHhhhCCCCCc
Q psy8733 284 TVDGVEFNY--IP---DSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI--GPAGITVVIVREDLLEYALPITPT 354 (621)
Q Consensus 284 T~tGv~~p~--i~---~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l--GP~Glg~livr~~ll~~~~~~~P~ 354 (621)
.-||..+++ |. +.+|+++=-|-+.++|..|+-+.+|| |.+-++.|.+ |+-|+|.++|.++......|..-.
T Consensus 225 yYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCSYKYlnaGaGgIgGlFvHekh~~~~~prl~G 304 (465)
T KOG3846|consen 225 YYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFACWCSYKYLNAGAGGIGGLFVHEKHTKESLPRLAG 304 (465)
T ss_pred eecccccchhhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEEEeeecccccCCCccceeeeehhhhcchhhHHhh
Confidence 999999996 32 46799999999999999999999998 9999999998 799999999998876654442211
Q ss_pred ee----------ecccccc---CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 355 VF----------HFKINAD---NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 355 ~l----------d~~~~~~---~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++ |-..... -+.+...||+..+.+|..+|+.+.+. .++++.+|..-++.++..-++.+-
T Consensus 305 Wwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~-~~~~lRkrS~lLTgYleyL~k~~~ 376 (465)
T KOG3846|consen 305 WWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQF-NINELRKRSLLLTGYLEYLLKASK 376 (465)
T ss_pred hccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHh-hHHHHhhhhhhHHhHHHHHHHHhc
Confidence 11 1000011 13455689999999999999999988 799999999999999988887764
No 257
>PLN02955 8-amino-7-oxononanoate synthase
Probab=98.02 E-value=0.0012 Score=73.97 Aligned_cols=120 Identities=10% Similarity=0.077 Sum_probs=76.6
Q ss_pred ceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCc---------ccc-cccceEEeccccccCCCccEEE
Q psy8733 274 ASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRK---------FDV-SKFGVIIAGAQKNIGPAGITVV 338 (621)
Q Consensus 274 t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~p---------IDv-~~~gvl~asaqK~lGP~Glg~l 338 (621)
.++|.+-..-...|...|+ +++++|+++++|=+.++|..- +++ .+.++++++--|.+|-.| |++
T Consensus 250 ~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~G-Gfi 328 (476)
T PLN02955 250 RKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHG-GFI 328 (476)
T ss_pred ceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhccC-cee
Confidence 4555555556667877775 456789999999888876421 222 234588899999998554 668
Q ss_pred EEchhHHhhhCCCCCceeeccccccCCCccCC-chHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q psy8733 339 IVREDLLEYALPITPTVFHFKINADNNSVYNT-PPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 339 ivr~~ll~~~~~~~P~~ld~~~~~~~~s~~~T-P~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e 408 (621)
..++++.+.+....+ ...|.| .|...+.+..++++.+.+. +...++.+++.+++++
T Consensus 329 ~gs~~~~~~l~~~~~-----------~~ifStalpp~~aaa~laal~l~~~~---~~~r~~L~~n~~~fr~ 385 (476)
T PLN02955 329 ACSKKWKQLIQSRGR-----------SFIFSTAIPVPMAAAAYAAVVVARKE---KWRRKAIWERVKEFKA 385 (476)
T ss_pred ecHHHHHHHHHHhCC-----------CCeecccccHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHH
Confidence 888877766543222 122333 3445566677788877653 2355666666666665
No 258
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.00 E-value=0.00012 Score=81.35 Aligned_cols=69 Identities=13% Similarity=0.278 Sum_probs=53.0
Q ss_pred CCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc--ccc--eEEecccccc-C-CCccEE
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS--KFG--VIIAGAQKNI-G-PAGITV 337 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~--~~g--vl~asaqK~l-G-P~Glg~ 337 (621)
.++++|++|++.+-.++++-+.|+ +++++|+++++|++-+ .|+-.+ +.| +++-|.-|++ | .-++|.
T Consensus 143 ~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~---tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G 219 (432)
T PRK06702 143 LANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLA---TPYLCQAFEHGANIIVHSTTKYIDGHASSLGG 219 (432)
T ss_pred hCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCC---chhhCChhhcCCCEEEEccccccCCCcceece
Confidence 367889999998888888888886 4578999999999843 344444 455 9999999999 5 445666
Q ss_pred EEE
Q psy8733 338 VIV 340 (621)
Q Consensus 338 liv 340 (621)
+++
T Consensus 220 ~v~ 222 (432)
T PRK06702 220 IVI 222 (432)
T ss_pred EEE
Confidence 665
No 259
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=97.99 E-value=0.00059 Score=73.29 Aligned_cols=127 Identities=10% Similarity=0.039 Sum_probs=79.1
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC---C--c-cc-ccccc--eEEeccccccCCCc--c
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS---R--K-FD-VSKFG--VIIAGAQKNIGPAG--I 335 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~---~--p-ID-v~~~g--vl~asaqK~lGP~G--l 335 (621)
++++++.+|+-.|.||...+. +.+.+++ +|+|-+-.-.. . + +. ++..+ +++.|-=|.+|.+| +
T Consensus 147 ~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRi 225 (360)
T PRK07392 147 TPNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRL 225 (360)
T ss_pred cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchhe
Confidence 467899999999999998884 3455664 66687643211 1 1 11 22333 77788899999777 7
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHHHHHHccC
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGG-LAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gG-l~~i~~r~~~la~~L~e~L~~~~ 414 (621)
|+++..+++++++... ....+++.....++..+|+ +. . .+.+.++.++..+.+.+.|++++
T Consensus 226 G~~v~~~~~~~~~~~~--------------~~~~~~s~~~q~~~~~~l~---~~-~~~~~~~~~~~~~r~~l~~~L~~~~ 287 (360)
T PRK07392 226 GYAIAHPDRLQRWQQW--------------RDPWPVNGLAAAAAIAALA---DR-DFQQQTWAWLPPAREALFQGLASLP 287 (360)
T ss_pred eeeeCCHHHHHHHHhh--------------CCCCCCCHHHHHHHHHHhc---cH-HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8898888887654210 0123444555555555543 21 2 23344556666778888888876
Q ss_pred Ccc
Q psy8733 415 KFY 417 (621)
Q Consensus 415 g~~ 417 (621)
|+.
T Consensus 288 ~~~ 290 (360)
T PRK07392 288 GLT 290 (360)
T ss_pred CcE
Confidence 554
No 260
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=97.98 E-value=0.001 Score=71.03 Aligned_cols=131 Identities=10% Similarity=0.064 Sum_probs=80.9
Q ss_pred ceEEEEecccccccccccc--------ccccCCCcEEEeccc---ccCCCccccccc----ceEEeccccccCCCccEEE
Q psy8733 274 ASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSS---NFLSRKFDVSKF----GVIIAGAQKNIGPAGITVV 338 (621)
Q Consensus 274 t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavS---s~G~~pIDv~~~----gvl~asaqK~lGP~Glg~l 338 (621)
..++..++. |..|++.|. +++++|.++++|++- ++-+.-++...| |.+++|.-|++|.++=++|
T Consensus 132 ~~~~~e~~~-te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~gAiv 210 (342)
T COG2008 132 PLAVLENTA-TEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVGAIV 210 (342)
T ss_pred ceEEEeecc-CCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcceeeeEE
Confidence 344444332 355999985 457899999999842 111122444444 5999999999997777899
Q ss_pred EEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 339 IVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLA-KMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 339 ivr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~-~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
+.+.++.++... |..+. ++.+ .-...++++..+..+. ++- ....|..++++.|-+++.+.+|+.
T Consensus 211 ~gn~~~~~~a~~-------~rK~~--Ggl~-----~k~r~laA~~~~~l~~-~~~~~~~~Han~mA~~La~~~~~~~G~~ 275 (342)
T COG2008 211 FGNRDFAKRARR-------WRKRA--GGLM-----RKARFLAAQGLYALED-DVWRLAADHANAMAARLAEGLEAKPGVK 275 (342)
T ss_pred EcCHHHHHHHHH-------HHHHh--cccH-----hhhhHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHhhhhcCCce
Confidence 999999876532 11111 1111 0112234445555555 543 444555668999999999877765
Q ss_pred cCc
Q psy8733 418 ECP 420 (621)
Q Consensus 418 ~~~ 420 (621)
+..
T Consensus 276 ~~~ 278 (342)
T COG2008 276 LAF 278 (342)
T ss_pred ecc
Confidence 543
No 261
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=97.97 E-value=0.0025 Score=69.79 Aligned_cols=125 Identities=14% Similarity=0.193 Sum_probs=79.5
Q ss_pred CCCCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCC--Cccccccc----ceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLS--RKFDVSKF----GVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~--~pIDv~~~----gvl~asaqK~lGP~ 333 (621)
+.+++++|.+..+....|+..+ + +++++|+++|+|=+++ +|- .+.-...+ |+..+| |.+| +
T Consensus 181 l~~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~s~s--K~l~-~ 257 (403)
T PRK05093 181 IDDHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSA--KALG-G 257 (403)
T ss_pred hcCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEEEec--cccc-C
Confidence 3456888888866655566533 1 4578999999999977 321 11111112 245444 9998 5
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|.++.++++.+.+... ....++.+++ ...++..++|+++.+. .+.++.+++.+++++.|.
T Consensus 258 G~rig~vv~~~~i~~~l~~~-----------~~~~t~~~~~-~~~~aa~a~L~~~~~~----~~~~~~~~~~~~l~~~L~ 321 (403)
T PRK05093 258 GFPIGAMLTTAEIASHFKVG-----------THGSTYGGNP-LACAVAEAVFDIINTP----EVLEGVKARRQRFVDGLQ 321 (403)
T ss_pred CcceEEEEEcHHHHhhcCCC-----------CCCCCCCCCH-HHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHH
Confidence 8 99999999987654320 1123444443 4466667788888543 345677788888999888
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
++
T Consensus 322 ~~ 323 (403)
T PRK05093 322 KI 323 (403)
T ss_pred HH
Confidence 75
No 262
>PLN02672 methionine S-methyltransferase
Probab=97.97 E-value=0.003 Score=76.87 Aligned_cols=127 Identities=12% Similarity=0.267 Sum_probs=72.9
Q ss_pred ceEEEEeccc-ccccccccc--------ccccCCCcEEEecccc---cCCCc---ccc-------cc----cc-eEEecc
Q psy8733 274 ASYLYYCDNE-TVDGVEFNY--------IPDSQGIPLVSDMSSN---FLSRK---FDV-------SK----FG-VIIAGA 326 (621)
Q Consensus 274 t~~V~~thnE-T~tGv~~p~--------i~~~~g~llvvDavSs---~G~~p---IDv-------~~----~g-vl~asa 326 (621)
.+.|.+|... |+||...+. +++++++++|+|-+=+ +...+ .++ +. .. +++.|-
T Consensus 829 ~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~Sf 908 (1082)
T PLN02672 829 KPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGL 908 (1082)
T ss_pred CCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCc
Confidence 3567777765 999999883 3457899999998764 11111 111 11 12 456677
Q ss_pred ccccCCCc--cEEEEEchh-HHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHh-hC----CHHHHHHH
Q psy8733 327 QKNIGPAG--ITVVIVRED-LLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKR-QG----GLAKMEQN 398 (621)
Q Consensus 327 qK~lGP~G--lg~livr~~-ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~-~g----Gl~~i~~r 398 (621)
=|.++.+| +|+++..++ +.+++... . ..+.++++ ..++..+++.++.. .+ -+....+.
T Consensus 909 SKkf~lpGLRIGylIap~~eLi~~l~~~-------~----~~s~~~~~---~q~Aaaaalall~~~~~~~~~~l~e~r~~ 974 (1082)
T PLN02672 909 STELLSGGHEFGFLALNDSVLIDAFHSA-------P----GLSRPHST---LKYTIKKLLGLKNQKSSDLLDGVAEQKKI 974 (1082)
T ss_pred HHhhccHHHHheeEEeCCHHHHHHHHHh-------h----hhcCCCcH---HHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 88888888 788888654 66654320 0 01112222 22333333433321 11 14555666
Q ss_pred HHHHHHHHHHHHHccC
Q psy8733 399 SLQKSVLLYQEIDNSD 414 (621)
Q Consensus 399 ~~~la~~L~e~L~~~~ 414 (621)
.++..+++++.|++.+
T Consensus 975 Lk~rRd~L~e~L~~~G 990 (1082)
T PLN02672 975 LKSRAERLKETLEACG 990 (1082)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 7778888899988763
No 263
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=97.97 E-value=0.0011 Score=71.60 Aligned_cols=124 Identities=16% Similarity=0.230 Sum_probs=77.1
Q ss_pred CCCCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCC--Cccccccc----ceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLS--RKFDVSKF----GVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~--~pIDv~~~----gvl~asaqK~lGP~ 333 (621)
+.+++++|.+....+..|+..+ + +++++++++|+|-+++ +|- .++..+.+ |++ +--|.+| +
T Consensus 164 ~~~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~-~ 240 (377)
T PRK02936 164 MNEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIV--TVAKGLG-N 240 (377)
T ss_pred ccCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEE--EEccccc-C
Confidence 3456888888777776676643 1 4568999999999975 332 23332223 244 4579998 5
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|.++.++++.+.+.. .....+++ +|....++..++|+.+.+. ...++.+++.+++++.|.
T Consensus 241 G~~ig~v~~~~~~~~~~~~-----------~~~~~t~~-~~~~~~aaa~a~l~~~~~~----~~~~~~~~~~~~l~~~L~ 304 (377)
T PRK02936 241 GIPVGAMIGKKELGTAFGP-----------GSHGSTFG-GNPLAMAAAKEVLQVIKQP----SFLEEVQEKGEYFLQKLQ 304 (377)
T ss_pred CCccEEEEEcHHHHhhccC-----------CCCCCCCC-CCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHH
Confidence 6 7888888888665421 01123343 4566678888888887543 223445556666666665
Q ss_pred c
Q psy8733 412 N 412 (621)
Q Consensus 412 ~ 412 (621)
+
T Consensus 305 ~ 305 (377)
T PRK02936 305 E 305 (377)
T ss_pred H
Confidence 5
No 264
>KOG0257|consensus
Probab=97.96 E-value=0.00037 Score=75.49 Aligned_cols=139 Identities=14% Similarity=0.241 Sum_probs=86.6
Q ss_pred cCCCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCc----cccc----ccc--eEEeccccc
Q psy8733 268 WNRDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRK----FDVS----KFG--VIIAGAQKN 329 (621)
Q Consensus 268 l~i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~p----IDv~----~~g--vl~asaqK~ 329 (621)
.+++++||+|.+|.-.|.||-.++- +++++|+++|.|-+=...... +.+. -|. +-++|+-|.
T Consensus 167 ~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKt 246 (420)
T KOG0257|consen 167 SKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKT 246 (420)
T ss_pred hhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccce
Confidence 3688999999999999999999983 457899999999764432211 1111 122 678999999
Q ss_pred cCCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCcc--CCchHHHHHHHHHHHHHH-HhhCC---HHHHHHHHHH
Q psy8733 330 IGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVY--NTPPTFVVHVIQRVFAWI-KRQGG---LAKMEQNSLQ 401 (621)
Q Consensus 330 lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~--~TP~v~~I~aL~~aL~~i-~~~gG---l~~i~~r~~~ 401 (621)
+|-+| +|-++..+.++..+.+ ...+..+ .|| .....+...++++. .+-|| +..+.+..++
T Consensus 247 f~~TGWrlGW~igp~~L~~~~~~-----------vh~~~~~~~~Tp-~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~ 314 (420)
T KOG0257|consen 247 FGVTGWRLGWAIGPKHLYSALFP-----------VHQNFVFTCPTP-IQEASAAAFALELACLQPGGSYFITELVKEYKE 314 (420)
T ss_pred eeeeeeeeeeeechHHhhhhHHH-----------HhhccccccCcH-HHHHHHHHHhhhhhccCCcchhHHHHHHHHHHH
Confidence 99988 8888885555433221 1111222 233 22222222233332 22233 3346777888
Q ss_pred HHHHHHHHHHccCCcccC
Q psy8733 402 KSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 402 la~~L~e~L~~~~g~~~~ 419 (621)
+.+.|.+.|++++ +...
T Consensus 315 krdil~k~L~~lg-~~v~ 331 (420)
T KOG0257|consen 315 KRDILAKALEELG-LKVT 331 (420)
T ss_pred HHHHHHHHHHhcC-Cccc
Confidence 8899999999984 6543
No 265
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=97.93 E-value=0.00092 Score=74.55 Aligned_cols=127 Identities=13% Similarity=0.174 Sum_probs=74.7
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEeccccc---CCCcc-cc---------cc-cc--eEEecc
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNF---LSRKF-DV---------SK-FG--VIIAGA 326 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~---G~~pI-Dv---------~~-~g--vl~asa 326 (621)
..++++|.+|+-.|++|...+. +++++++.+|+|-+=+. ...++ .+ .. -+ .++.|-
T Consensus 198 ~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~ 277 (447)
T PLN02607 198 NIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSL 277 (447)
T ss_pred CCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcc
Confidence 3478999999999999998883 34578999999987543 21111 11 11 12 667788
Q ss_pred ccccCCCc--cEEEEE-chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH---HHHhhCCHHHHHHHHH
Q psy8733 327 QKNIGPAG--ITVVIV-REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA---WIKRQGGLAKMEQNSL 400 (621)
Q Consensus 327 qK~lGP~G--lg~liv-r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~---~i~~~gGl~~i~~r~~ 400 (621)
=|.+|-+| +|+++. ++++...+.. -+.++.++...-.++...|+ |+.+. ++...++.+
T Consensus 278 SK~fg~~GlRvG~ivs~n~~l~~~~~~--------------~~~~~~~s~~~q~~~~~~L~d~~~~~~~--l~~~r~~l~ 341 (447)
T PLN02607 278 SKDLGLPGFRVGTIYSYNDKVVTTARR--------------MSSFTLVSSQTQHLLASMLSDEEFTENY--IRTNRERLR 341 (447)
T ss_pred hhcCCCCcceEEEEEEcCHHHHHHHHH--------------HhhcCCCCHHHHHHHHHHhCCchhHHHH--HHHHHHHHH
Confidence 99999888 588887 4445443211 11122222223333333332 22221 345556666
Q ss_pred HHHHHHHHHHHcc
Q psy8733 401 QKSVLLYQEIDNS 413 (621)
Q Consensus 401 ~la~~L~e~L~~~ 413 (621)
+..+.+.+.|++.
T Consensus 342 ~~~~~~~~~L~~~ 354 (447)
T PLN02607 342 KRYEMIVQGLRRA 354 (447)
T ss_pred HHHHHHHHHHHhC
Confidence 6777788888775
No 266
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=97.91 E-value=0.00028 Score=79.74 Aligned_cols=128 Identities=13% Similarity=0.147 Sum_probs=77.0
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC---C-Cccc---------ccc--cc--eEEec
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL---S-RKFD---------VSK--FG--VIIAG 325 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G---~-~pID---------v~~--~g--vl~as 325 (621)
..++++|.+|+-.|+||...+. +++++++++|+|-+-+.. . .... ... .+ +++.|
T Consensus 197 ~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S 276 (496)
T PLN02376 197 NKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYS 276 (496)
T ss_pred CCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEe
Confidence 3578999999999999999984 345789999999876532 1 1111 111 13 34689
Q ss_pred cccccCCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH---HHHhhCCHHHHHHHHH
Q psy8733 326 AQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA---WIKRQGGLAKMEQNSL 400 (621)
Q Consensus 326 aqK~lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~---~i~~~gGl~~i~~r~~ 400 (621)
--|.+|.+| +|+++..++.+..... ....++..+...-+++...|+ |+.+. +....++.+
T Consensus 277 ~SK~~glpGlRvG~li~~~~~l~~~~~-------------~~~~~~~vs~~~Q~a~~~~L~d~~~~~~~--l~~~r~~l~ 341 (496)
T PLN02376 277 LSKDMGLPGFRVGIVYSFNDSVVSCAR-------------KMSSFGLVSSQTQLMLASMLSDDQFVDNF--LMESSRRLG 341 (496)
T ss_pred ccccCCCCcceEEEEEECCHHHHHHHH-------------HHhhcCCCCHHHHHHHHHHhCChhHHHHH--HHHHHHHHH
Confidence 999999777 7888885444322100 011223333444444444442 22221 444566667
Q ss_pred HHHHHHHHHHHcc
Q psy8733 401 QKSVLLYQEIDNS 413 (621)
Q Consensus 401 ~la~~L~e~L~~~ 413 (621)
++.+.+.+.|++.
T Consensus 342 ~r~~~l~~~L~~~ 354 (496)
T PLN02376 342 IRHKVFTTGIKKA 354 (496)
T ss_pred HHHHHHHHHHHHC
Confidence 7777788888765
No 267
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=97.91 E-value=0.0036 Score=68.53 Aligned_cols=126 Identities=12% Similarity=0.201 Sum_probs=79.1
Q ss_pred CCCCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCCc--cccccc----ceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSRK--FDVSKF----GVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~p--IDv~~~----gvl~asaqK~lGP~ 333 (621)
+.+++++|.+.......|+..+- +++++|+++|+|=+++ +|... .-.+.+ |++.. =|.+| .
T Consensus 176 l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~t~--~K~lg-g 252 (397)
T TIGR03246 176 ISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILTS--AKALG-G 252 (397)
T ss_pred hccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEEEe--ehhhh-C
Confidence 34568888888777777776531 4568999999999973 32110 111222 34433 58885 2
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|.+..++++.+.+.. ....++++..| ....+..++|+.+.+. ++.++.+++.+++++.|.
T Consensus 253 G~pigav~~~~~i~~~~~~-----------~~~~~t~~~~p-~~~aaa~a~l~~~~~~----~l~~~~~~~~~~l~~~L~ 316 (397)
T TIGR03246 253 GFPIGAMLTTTEIAAHLKV-----------GTHGTTYGGNP-LACAVAGKVLDLVNTP----ELLAGVKQRHDLFVDGLE 316 (397)
T ss_pred CcceeEEEEcHHHHHhccC-----------CCcCCCCCCCH-HHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHH
Confidence 4 7888889888664421 01234554333 4466667888887543 456777888889999888
Q ss_pred ccC
Q psy8733 412 NSD 414 (621)
Q Consensus 412 ~~~ 414 (621)
++.
T Consensus 317 ~l~ 319 (397)
T TIGR03246 317 KIN 319 (397)
T ss_pred HHH
Confidence 763
No 268
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=97.87 E-value=9.1e-05 Score=81.54 Aligned_cols=129 Identities=16% Similarity=0.217 Sum_probs=79.8
Q ss_pred eEEEEecccccccccccc-----ccccCCCcEEEecccccC--CCcccccc----cc-------eEEeccccccC-CCcc
Q psy8733 275 SYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFL--SRKFDVSK----FG-------VIIAGAQKNIG-PAGI 335 (621)
Q Consensus 275 ~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G--~~pIDv~~----~g-------vl~asaqK~lG-P~Gl 335 (621)
++|.+|+ .|=.|+..|+ ++++++++++||.+-..- -.++.-+. .| +++-|.||.++ .+-.
T Consensus 170 ~~vvlt~-PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a~~~gad~~~~~~~~vvqS~HKtL~altQt 248 (417)
T PF01276_consen 170 RLVVLTS-PTYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSALALGADRPNDPGIIVVQSTHKTLPALTQT 248 (417)
T ss_dssp SEEEEES-S-TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-
T ss_pred eEEEEeC-CCCCeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccchhhccCccccccceeeeechhhcccccccc
Confidence 3366665 5778999996 346789999999864321 01332221 24 89999999995 8889
Q ss_pred EEEEEchhH-H--hhhCCCCCceeeccccccCCCcc--CCchHHHHHHHHHHHHHH-HhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 336 TVVIVREDL-L--EYALPITPTVFHFKINADNNSVY--NTPPTFVVHVIQRVFAWI-KRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 336 g~livr~~l-l--~~~~~~~P~~ld~~~~~~~~s~~--~TP~v~~I~aL~~aL~~i-~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
+++-++.+. + +++. +.-.++ -+|+...+..+..|.+++ .+. | .++.++..+++..+|+.
T Consensus 249 s~lh~~~~~~v~~~~~~-------------~~l~~~~TTSPSY~lmASlD~a~~~m~~~~-G-~~l~~~~i~~a~~~R~~ 313 (417)
T PF01276_consen 249 SMLHVKGDRIVDHERVN-------------EALSMHQTTSPSYPLMASLDVARAQMEEEE-G-RELLEEAIELAEEFRKK 313 (417)
T ss_dssp EEEEEETCCCTTHHHHH-------------HHHHHHS-SS--HHHHHHHHHHHHHHSHHH-H-HHHHHHHHHHHHHHHHH
T ss_pred eEEEecCCCcccHHHHH-------------HHHHHHcCCChHHHHHHHHHHHHHHHhhhh-h-HHHHHHHHHHHHHHHHH
Confidence 999998874 2 1111 000111 367778888899999999 555 4 56677778888999999
Q ss_pred H---HccCCcccC
Q psy8733 410 I---DNSDKFYEC 419 (621)
Q Consensus 410 L---~~~~g~~~~ 419 (621)
| ..+.+|...
T Consensus 314 i~~~~~~~~~~~~ 326 (417)
T PF01276_consen 314 INRLNDIWGFKVL 326 (417)
T ss_dssp HHHHCCT-SSEES
T ss_pred HHhcCCCceEecC
Confidence 9 455555544
No 269
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=97.87 E-value=1.3e-05 Score=86.23 Aligned_cols=151 Identities=16% Similarity=0.162 Sum_probs=110.4
Q ss_pred hhhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCcee-------eeeecccCCCccC--CCchhHHHHHHHHHHHH
Q psy8733 446 AFFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVF-------HFKINADNNSVYN--TPPTFVVHVIQRVFAWI 516 (621)
Q Consensus 446 ~~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~-------~y~~~~~~~s~~n--TP~~~~iy~~~~vl~~~ 516 (621)
....|++++|+||-+||.|++++++|++++++..+..+.-. +..........|. |||+..++-++..++++
T Consensus 189 ~~~~D~~~~s~~Kl~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~ 268 (371)
T PF00266_consen 189 ELGADFLVFSSHKLGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLL 268 (371)
T ss_dssp TTTESEEEEESTSTTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHH
T ss_pred ccccceeeecccccCCCCchhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhh
Confidence 34568899999994469999999999999988644322111 1111122233344 99999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHHhccCCcccccC-CC----C-------Cc-ccHHHHHHHHHccCccccCCCCC----
Q psy8733 517 KRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPV-QA----G-------FP-LDELFLKEAKAHNMIQLKGHRLV---- 579 (621)
Q Consensus 517 ~~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v-~~----~-------~~-~~~~~~~~~~~~~i~~~~g~~~~---- 579 (621)
+++|++.++++..+.++.+.+.+++.++. .... +. . .. -...+.+.++++||....|+...
T Consensus 269 -~~~g~~~i~~~~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~~I~~~~G~~~~~~~~ 346 (371)
T PF00266_consen 269 -EEIGIERIRERIRELAEYLREALEELPGI-EVLGPDDEPRRPSIVSFNLPGSDADDVVKYLEERGIAVSTGSACAGPSL 346 (371)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHTTTE-EESSSSCGGBGTTEEEEEETTSSHHHHHHHHHHHTEEEEESTTTCHHHH
T ss_pred -hccccccchhhhhhHHHHHHhhhhcCCce-eEeeecccccccceEEEeecCCCHHHHHHHHhhcCEEEeccCcccHHHH
Confidence 56789999999999999999999987632 2111 11 0 01 23457888888899988888765
Q ss_pred ------CccceeeccCCCHHHHHHH
Q psy8733 580 ------GGIRASIYNAITVDEAVIL 598 (621)
Q Consensus 580 ------~~~r~~~~~a~~~~~~~~l 598 (621)
|.||+|...-.|.||+++|
T Consensus 347 ~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 347 DILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp HHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred HHhCCCCEEEEeccCCCCHHHHhhC
Confidence 8999999999999999987
No 270
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=97.86 E-value=0.0026 Score=70.18 Aligned_cols=122 Identities=12% Similarity=0.225 Sum_probs=72.5
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC----cccccc--cceEEeccccccCCCc--
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR----KFDVSK--FGVIIAGAQKNIGPAG-- 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~----pIDv~~--~gvl~asaqK~lGP~G-- 334 (621)
++.+|.+-......|+..+- +++++|+++|+|-+|+ +|-. ..+... -|++++| |++|+-|
T Consensus 194 ~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~~~--K~lg~~G~p 271 (412)
T TIGR02407 194 LPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCLS--KSISGYGLP 271 (412)
T ss_pred ceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEEec--hhccCCccc
Confidence 45566554444445665431 4568999999999987 3310 111111 2366666 9998877
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH-HHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA-WIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~-~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.+++++++ +... + ....++++ .+.....+..++++ ++.+. .+.++.+++.+++.+.|+.+
T Consensus 272 igav~~~~~~-~~~~---~--------~~~~~T~~-gnpl~~aaa~a~l~~~i~~~----~l~~~~~~~g~~l~~~l~~l 334 (412)
T TIGR02407 272 LALTLIKPEL-DVWK---P--------GEHNGTFR-GNNLAFVTATAALEYYWSDD----AFEKAVQRKSEIIQERLDRI 334 (412)
T ss_pred eeEEEEchhh-hccC---C--------CccCCCCC-ccHHHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHHHH
Confidence 8999999875 3221 1 01223443 33444555677888 45442 45566667777777777653
No 271
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=97.85 E-value=0.0013 Score=70.71 Aligned_cols=127 Identities=13% Similarity=0.155 Sum_probs=80.7
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Ccc---c--c--cccc--eEEeccccccC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RKF---D--V--SKFG--VIIAGAQKNIG 331 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~pI---D--v--~~~g--vl~asaqK~lG 331 (621)
+++++|++++..|.||...+. +++++++++|+|-+-.-.. .++ + + .+.+ +++.|--|.+|
T Consensus 147 ~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 226 (364)
T PRK07865 147 QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSN 226 (364)
T ss_pred ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccC
Confidence 468899999888999998873 2457899999999865322 111 1 1 0223 88999999999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|+++.++++++++... . .....+++.....++..+|+ +..-++.+.++.+++.+.+++.
T Consensus 227 ~~GlRiG~i~~~~~~~~~~~~~-------~-----~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~ 291 (364)
T PRK07865 227 LAGYRAGFVAGDPALVAELLEV-------R-----KHAGMMVPAPVQAAMVAALG---DDAHVREQRERYARRRAVLRPA 291 (364)
T ss_pred CCceeeEEEecCHHHHHHHHHH-------H-----HhcCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHH
Confidence 787 88888888887655320 0 01111233334444434443 2112566667777788888888
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|.+.
T Consensus 292 L~~~ 295 (364)
T PRK07865 292 LEAA 295 (364)
T ss_pred HHHc
Confidence 8875
No 272
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=97.82 E-value=0.0056 Score=67.19 Aligned_cols=125 Identities=14% Similarity=0.168 Sum_probs=78.3
Q ss_pred CCCCceEEEEeccccccccccc-c--------ccccCCCcEEEecccc-cCCC--ccccccc----ceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFN-Y--------IPDSQGIPLVSDMSSN-FLSR--KFDVSKF----GVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p-~--------i~~~~g~llvvDavSs-~G~~--pIDv~~~----gvl~asaqK~lGP~ 333 (621)
+.+++++|.+-.+....|+..+ . +++++|+++|+|=+++ +|.. ..-.+.+ |++.+ =|.+| .
T Consensus 180 l~~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~t~--sK~l~-g 256 (406)
T PRK12381 180 IDDQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTT--AKALG-G 256 (406)
T ss_pred ccCCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCEEEe--hhhhh-C
Confidence 3456777777655555565543 1 4568999999999974 4321 1111222 24444 49996 3
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|.++.++++.+.+.+. ....++. .+.....+..++|+.+.+. .+.++.+++.+++++.|+
T Consensus 257 G~~ig~~~~~~~~~~~~~~~-----------~~~~t~~-~~pl~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~L~ 320 (406)
T PRK12381 257 GFPIGAMLTTEKCASVMTVG-----------THGTTYG-GNPLASAVAGKVLELINTP----EMLNGVKQRHDWFVERLN 320 (406)
T ss_pred CCceEEEEEcHHHHhhcCCC-----------CCCCCCC-CCHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHH
Confidence 5 78889999887654320 1123443 4445567777888888643 456777788888888887
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
++
T Consensus 321 ~l 322 (406)
T PRK12381 321 TI 322 (406)
T ss_pred HH
Confidence 75
No 273
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=97.77 E-value=0.0014 Score=71.28 Aligned_cols=127 Identities=14% Similarity=0.105 Sum_probs=78.1
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC-----Ccc---------cccccc--eEEecc
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS-----RKF---------DVSKFG--VIIAGA 326 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~-----~pI---------Dv~~~g--vl~asa 326 (621)
.++++++++|+-.|+||...+. +++++++++|+|-+=+-.. .++ +.+.++ +++.|-
T Consensus 164 ~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~ 243 (396)
T PRK09147 164 WARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSL 243 (396)
T ss_pred hhccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEecc
Confidence 3578999999999999999873 3457899999998754321 111 112234 788899
Q ss_pred ccccCCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q psy8733 327 QKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSV 404 (621)
Q Consensus 327 qK~lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~ 404 (621)
=|.+|.+| +|+++.++++++++.... .....+++.....+..+++. .+. -+.+..++.+++.+
T Consensus 244 SK~~~~~GlRiG~~~~~~~l~~~~~~~~------------~~~~~~~~~~~q~a~~~~~~--~~~-~~~~~~~~~~~~~~ 308 (396)
T PRK09147 244 SKRSNVPGLRSGFVAGDAALLKKFLLYR------------TYHGCAMPPAVQAASIAAWN--DEA-HVRENRALYREKFD 308 (396)
T ss_pred ccccCCccceeeeecCCHHHHHHHHHHh------------hhcccCCCHHHHHHHHHHhc--chh-HHHHHHHHHHHHHH
Confidence 99998777 788888888876653200 00111233333333333332 111 24555666666667
Q ss_pred HHHHHHHc
Q psy8733 405 LLYQEIDN 412 (621)
Q Consensus 405 ~L~e~L~~ 412 (621)
.+.+.|.+
T Consensus 309 ~~~~~L~~ 316 (396)
T PRK09147 309 AVTPILAP 316 (396)
T ss_pred HHHHHHHH
Confidence 77777665
No 274
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=97.74 E-value=0.00045 Score=74.95 Aligned_cols=107 Identities=14% Similarity=0.244 Sum_probs=74.5
Q ss_pred cCCCCCceEEEEecccccccccccc-------ccccCCCcEEEecccccCCC-ccccccc-----ceEEeccccccC-CC
Q psy8733 268 WNRDPEASYLYYCDNETVDGVEFNY-------IPDSQGIPLVSDMSSNFLSR-KFDVSKF-----GVIIAGAQKNIG-PA 333 (621)
Q Consensus 268 l~i~~~t~~V~~thnET~tGv~~p~-------i~~~~g~llvvDavSs~G~~-pIDv~~~-----gvl~asaqK~lG-P~ 333 (621)
..++++++++..+|.++- |..-.+ +++++++++++|+.|..... .-++..+ |++++|++|.|| |.
T Consensus 151 ~AIne~ta~llkV~s~~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPq 229 (395)
T COG1921 151 LAINENTALLLKVHSSNY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGPQ 229 (395)
T ss_pred HHhccCCeeEEEEeeccc-cccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCCc
Confidence 358899999999998864 332221 56789999999999865433 2344432 499999999995 87
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHh
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKR 388 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~ 388 (621)
.|+++.|+++++++... |-.. .-+-+- ..++++.++|+....
T Consensus 230 -aGii~GkKelI~~lq~~-~l~R--------alrv~K---~tla~l~~aLe~y~~ 271 (395)
T COG1921 230 -AGIIVGKKELIEKLQSH-PLKR--------ALRVDK---ETLAALEAALELYLQ 271 (395)
T ss_pred -cceEechHHHHHHHHhh-hhhh--------hhhcCc---HhHHHHHHHHHHHcC
Confidence 89999999999887542 2110 011111 267888889987765
No 275
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=97.74 E-value=0.0044 Score=67.86 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=55.2
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCcc---cccc--cc--eEEeccccccCCCc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRKF---DVSK--FG--VIIAGAQKNIGPAG 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~pI---Dv~~--~g--vl~asaqK~lGP~G 334 (621)
++++++++.+|+-.|.||...+. +++++++++|+|-+-+.....+ +... .+ +++.|-=|. +.+|
T Consensus 176 ~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~vI~~~SfSK~-~~pG 254 (416)
T PRK09440 176 IDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATPLWNPNIILCMSLSKL-GLPG 254 (416)
T ss_pred cCCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCccccCCeEEEeccccc-CCCc
Confidence 35578999999999999999884 3457899999999864221111 1111 23 667888995 7677
Q ss_pred --cEEEEEchhHHhhh
Q psy8733 335 --ITVVIVREDLLEYA 348 (621)
Q Consensus 335 --lg~livr~~ll~~~ 348 (621)
+|+++..+++++++
T Consensus 255 lRiG~~i~~~~l~~~~ 270 (416)
T PRK09440 255 VRCGIVIADEEIIEAL 270 (416)
T ss_pred ceEEEEeCCHHHHHHH
Confidence 78888888887655
No 276
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=97.73 E-value=0.0081 Score=64.95 Aligned_cols=123 Identities=10% Similarity=0.126 Sum_probs=73.3
Q ss_pred CCCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC--ccccccc----ceEEeccccccCCCc
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR--KFDVSKF----GVIIAGAQKNIGPAG 334 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~--pIDv~~~----gvl~asaqK~lGP~G 334 (621)
.+++++|.+....+.+|+..+. +++++|+++++|-++. +|.. +.-.+.+ |++ +--|.+|| |
T Consensus 163 ~~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~-G 239 (375)
T PRK04260 163 NKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIF--TLAKGLAN-G 239 (375)
T ss_pred CCCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEE--EecccccC-C
Confidence 4567788888777777887651 3567899999999975 3321 1111122 244 45689974 4
Q ss_pred --cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 335 --ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 335 --lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+|.++.++++.+.+.. ....+++++++. ...+..++|+.+.+. ...++.++..+.+++.+.+
T Consensus 240 ~~ig~~~~~~~~~~~~~~-----------~~~~~t~~~~~~-~~~aa~a~l~~~~~~----~~~~~~~~~~~~~~~~l~~ 303 (375)
T PRK04260 240 VPVGAMLAKSSLGGAFGY-----------GSHGSTFGGNKL-SMAAASATLDIMLTA----GFLEQALENGNYLQEQLQK 303 (375)
T ss_pred cceEEEEEcHHHHhhcCC-----------CCCCCCCCcCHH-HHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHH
Confidence 8999999987654321 012344544444 456666677776543 3334555555555555544
No 277
>PTZ00376 aspartate aminotransferase; Provisional
Probab=97.73 E-value=0.0043 Score=67.89 Aligned_cols=134 Identities=16% Similarity=0.188 Sum_probs=75.2
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC-c--------ccccc-c-c-eEEeccccccC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR-K--------FDVSK-F-G-VIIAGAQKNIG 331 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~-p--------IDv~~-~-g-vl~asaqK~lG 331 (621)
++++++.++...|.||...+. +++++++++|+|-+-.-... . ..+.. . . +++.|-=|.+|
T Consensus 175 ~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~ 254 (404)
T PTZ00376 175 NGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMG 254 (404)
T ss_pred CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCccc
Confidence 456777789999999999883 34578999999987532211 0 11122 2 2 77788899999
Q ss_pred CCc--cEEEE---EchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHH---HHhh-CCHHHHHHHHHHH
Q psy8733 332 PAG--ITVVI---VREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW---IKRQ-GGLAKMEQNSLQK 402 (621)
Q Consensus 332 P~G--lg~li---vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~---i~~~-gGl~~i~~r~~~l 402 (621)
.+| +|+++ .++++.+++... .... ......+++.....++..+|+- ..+. .-++.+.++.+++
T Consensus 255 ~~GlRvG~~~~~~~~~~~~~~l~~~------~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 326 (404)
T PTZ00376 255 LYGERIGALHIVCANKEEAANVLSQ------LKLI--IRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNM 326 (404)
T ss_pred ccccccceEEEEeCCHHHHHHHHHH------HHHH--HhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888 66663 355544432110 0000 0122233343444443333321 0000 0134556677788
Q ss_pred HHHHHHHHHcc
Q psy8733 403 SVLLYQEIDNS 413 (621)
Q Consensus 403 a~~L~e~L~~~ 413 (621)
.+.+++.|+++
T Consensus 327 r~~l~~~L~~~ 337 (404)
T PTZ00376 327 RQLLYDELKAL 337 (404)
T ss_pred HHHHHHHHHhc
Confidence 88888888876
No 278
>PLN02368 alanine transaminase
Probab=97.70 E-value=0.001 Score=73.41 Aligned_cols=131 Identities=12% Similarity=0.092 Sum_probs=85.5
Q ss_pred CceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----Ccc--------cc----cccc--eEEecc
Q psy8733 273 EASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKF--------DV----SKFG--VIIAGA 326 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pI--------Dv----~~~g--vl~asa 326 (621)
+++++.+|.-.|.||...+. +++++++++|.|=+=.-.. .+. ++ ++.+ +++.|-
T Consensus 210 ~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~Sf 289 (407)
T PLN02368 210 TVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTV 289 (407)
T ss_pred CeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecC
Confidence 68989999889999999884 3457899999997533211 111 11 1233 677888
Q ss_pred cccc-CCCc--cEEEEE---chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH-----------HHHhh
Q psy8733 327 QKNI-GPAG--ITVVIV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA-----------WIKRQ 389 (621)
Q Consensus 327 qK~l-GP~G--lg~liv---r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~-----------~i~~~ 389 (621)
=|.+ |.+| +|.++. .+++++++... . ....+++++..+++.++|+ |..+
T Consensus 290 SK~~~~~~GlRiGy~i~~~~~~~li~~~~~~----------~---~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~- 355 (407)
T PLN02368 290 SKGYWGECGQRGGYFEMTNIPPKTVEEIYKV----------A---SIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRE- 355 (407)
T ss_pred CcccccCCccceEEEEEeCCCHHHHHHHHHH----------h---cccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHH-
Confidence 9998 7888 577774 67777654320 0 1122355556666666663 1211
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 390 GGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 390 gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
+.++.+..+++.+.+++.|.+++|+...
T Consensus 356 --~~~~~~~~~~rr~~~~~~L~~~~g~~~~ 383 (407)
T PLN02368 356 --SKGILESLRRRARMMTDGFNSCKNVVCN 383 (407)
T ss_pred --HHHHHHHHHHHHHHHHHHHhCCCCeEeC
Confidence 3556778888899999999998776443
No 279
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=97.68 E-value=0.00072 Score=75.12 Aligned_cols=130 Identities=14% Similarity=0.097 Sum_probs=76.8
Q ss_pred CceEEEEecccccc-cccccc--------ccccCCCcEEEecccccC-----------CCcccc-------ccc-ceEEe
Q psy8733 273 EASYLYYCDNETVD-GVEFNY--------IPDSQGIPLVSDMSSNFL-----------SRKFDV-------SKF-GVIIA 324 (621)
Q Consensus 273 ~t~~V~~thnET~t-Gv~~p~--------i~~~~g~llvvDavSs~G-----------~~pIDv-------~~~-gvl~a 324 (621)
++++|.++.-.|++ |...+. +++++|+++|.|++..++ .....+ -.+ +.+..
T Consensus 152 ~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~m 231 (431)
T cd00617 152 NIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTM 231 (431)
T ss_pred CccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEE
Confidence 47888887766766 777652 456899999999997753 222222 123 38899
Q ss_pred ccccccC-CCccEEEEEch-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q psy8733 325 GAQKNIG-PAGITVVIVRE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQK 402 (621)
Q Consensus 325 saqK~lG-P~Glg~livr~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~l 402 (621)
|++|..+ |. -|+++.++ ++.+++...... .+....++..+.-.+.++..+|+...+ .+.+.++..+.
T Consensus 232 S~~K~~~~~~-GG~i~~~d~~l~~~~~~~~~~-------~~~~~~~gG~~~r~~~A~A~gL~e~~~---~~~l~~~~~~r 300 (431)
T cd00617 232 SAKKDGLVNI-GGFLALRDDELYEEARQRVVL-------YEGFVTYGGMAGRDMEALAQGLREAVE---EDYLRHRVEQV 300 (431)
T ss_pred EeecCCCCcc-ceEEEeCcHHHHHHHHHhccc-------cCCccccccccHHHHHHHHHHHHhccc---HHHHHHHHHHH
Confidence 9999886 55 35777776 477776532110 111122333344445555545543211 23444444444
Q ss_pred HHHHHHHHHccC
Q psy8733 403 SVLLYQEIDNSD 414 (621)
Q Consensus 403 a~~L~e~L~~~~ 414 (621)
++|.+.|++.|
T Consensus 301 -~~l~~~L~~~G 311 (431)
T cd00617 301 -RYLGDRLDEAG 311 (431)
T ss_pred -HHHHHHHHHCC
Confidence 78889998875
No 280
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=97.67 E-value=0.002 Score=73.27 Aligned_cols=74 Identities=15% Similarity=0.271 Sum_probs=52.6
Q ss_pred CCCCceEEEEecccccccccccc--------cccc--CCCcEEEecccccCC-Ccccc-ccc--c-eEEeccccccCCCc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDS--QGIPLVSDMSSNFLS-RKFDV-SKF--G-VIIAGAQKNIGPAG 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~--~g~llvvDavSs~G~-~pIDv-~~~--g-vl~asaqK~lGP~G 334 (621)
+++++++|.++.-.|+||...+. ++++ +++++|+|=+=+-.. ....+ +.+ . +++.|-=|.+|.+|
T Consensus 237 ~~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~~G 316 (521)
T TIGR03801 237 RDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFGATG 316 (521)
T ss_pred cCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhccCch
Confidence 46789999999989999999883 2444 489999997643221 11111 111 2 78889999999888
Q ss_pred --cEEEEEchh
Q psy8733 335 --ITVVIVRED 343 (621)
Q Consensus 335 --lg~livr~~ 343 (621)
+|+++..++
T Consensus 317 ~RlG~i~~~~~ 327 (521)
T TIGR03801 317 WRLGTIALHKD 327 (521)
T ss_pred hhhhhhhcCch
Confidence 888988765
No 281
>KOG2862|consensus
Probab=97.66 E-value=0.00018 Score=75.29 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=108.8
Q ss_pred hhhHHHHHhhcccccc-cCCcEEeeecHhHhhhcCCC----CCceee---eeecccC----CCccCCCchhHHHHHHHHH
Q psy8733 446 AFFFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPI----TPTVFH---FKINADN----NSVYNTPPTFVVHVIQRVF 513 (621)
Q Consensus 446 ~~~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~----~p~~~~---y~~~~~~----~s~~nTP~~~~iy~~~~vl 513 (621)
.+.-|+.|-|.||.+| |+|++++=-++.++++-... .-..+| |-+.-.. .-.++|||+-.+|-|---|
T Consensus 193 ewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL 272 (385)
T KOG2862|consen 193 EWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAAL 272 (385)
T ss_pred hhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHH
Confidence 4667999999999999 99999988888888763211 122222 2222222 3456899999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHhccC--CcccccCCC--C-----C--c-ccHHHHHHHHHc-cCccccCCCCCC
Q psy8733 514 AWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD--KFYECPVQA--G-----F--P-LDELFLKEAKAH-NMIQLKGHRLVG 580 (621)
Q Consensus 514 ~~~~~~gg~~~~~~~~~~ka~~lY~~id~~~--~~~~~~v~~--~-----~--~-~~~~~~~~~~~~-~i~~~~g~~~~~ 580 (621)
.-|.++| ++..=+|-++=|+.+|..+++.. .|...+-.. . . - --+++...++.| ++..+.|++.++
T Consensus 273 ~~I~eeG-L~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp~gvDw~dVv~~~~~~~~vei~gglg~~~ 351 (385)
T KOG2862|consen 273 ALIAEEG-LENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVPYGVDWKDVVAYAMSHYVVEIGGGLGPTV 351 (385)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecCCCCCHHHHHHHHHHhcCEEeccccCCCc
Confidence 9998776 99999999999999999999853 221111000 0 0 1 234577888888 777999999976
Q ss_pred c--cceeeccCC-CHHHHHHHHHHHH
Q psy8733 581 G--IRASIYNAI-TVDEAVILVKFMK 603 (621)
Q Consensus 581 ~--~r~~~~~a~-~~~~~~~l~~~~~ 603 (621)
+ |||..+=-- +.|-++..++.|+
T Consensus 352 gKv~RIGl~gcna~~e~i~~v~~ll~ 377 (385)
T KOG2862|consen 352 GKVFRIGLLGCNANVEYIDNVVELLK 377 (385)
T ss_pred ccEEEEEEeeccCCcHHHHHHHHHHH
Confidence 6 999976432 3344455555444
No 282
>PLN02409 serine--glyoxylate aminotransaminase
Probab=97.63 E-value=5.4e-05 Score=82.90 Aligned_cols=162 Identities=14% Similarity=0.116 Sum_probs=121.6
Q ss_pred hhHHHHHhhcccccc-cCCcEEeeecHhHhhhcCCC--CCceeeeeeccc---C-CCccCCCchhHHHHHHHHHHHHHhc
Q psy8733 447 FFFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPI--TPTVFHFKINAD---N-NSVYNTPPTFVVHVIQRVFAWIKRQ 519 (621)
Q Consensus 447 ~~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~--~p~~~~y~~~~~---~-~s~~nTP~~~~iy~~~~vl~~~~~~ 519 (621)
...|+++.|+||.++ |.|+++++++++++++..+. .|..++|....+ . ..+.+|||+..+|.+...++|+.+.
T Consensus 190 ~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~ 269 (401)
T PLN02409 190 WGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEE 269 (401)
T ss_pred cCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHh
Confidence 457899999999994 99999999999999875432 344554433211 1 2336799999999999999999854
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccCCcccccCCC---C---------Cccc-HHHHHHH-HHccCccccCCCC--CCccc
Q psy8733 520 GGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQA---G---------FPLD-ELFLKEA-KAHNMIQLKGHRL--VGGIR 583 (621)
Q Consensus 520 gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~---~---------~~~~-~~~~~~~-~~~~i~~~~g~~~--~~~~r 583 (621)
|++.++++.++.++.+++.+++. ++-....++ . ...+ .++.+.+ +++||....|++. .+.||
T Consensus 270 -G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p~~~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~R 347 (401)
T PLN02409 270 -GLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAVVVPEGIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFR 347 (401)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEEeCCCCCCHHHHHHHHHHhCCEEEEcCCCcccCCEEE
Confidence 69999999999999999999864 332111111 0 0122 3465554 6789999999987 34599
Q ss_pred eeeccCCCHHHHHHHHHHHHHHHHHcC
Q psy8733 584 ASIYNAITVDEAVILVKFMKEFRHKHS 610 (621)
Q Consensus 584 ~~~~~a~~~~~~~~l~~~~~~~~~~~~ 610 (621)
|+...-++.+++..++..|.+-..+.+
T Consensus 348 ig~~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 348 IGHLGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999998777654
No 283
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=97.63 E-value=0.019 Score=63.45 Aligned_cols=130 Identities=12% Similarity=0.135 Sum_probs=80.1
Q ss_pred CCceEEEEec-ccccccccccc---------ccccCCCcEEEecccc-cCC--Cccccccc----ceEEeccccccC-C-
Q psy8733 272 PEASYLYYCD-NETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKF----GVIIAGAQKNIG-P- 332 (621)
Q Consensus 272 ~~t~~V~~th-nET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~----gvl~asaqK~lG-P- 332 (621)
++..+|.+-. .....|+..+- +++++|+++|+|-+++ +|. ..+-.+.+ |++++| |++| .
T Consensus 198 ~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~pDi~~~~--K~l~gG~ 275 (423)
T PRK05964 198 GEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPDIMCLS--KGLTGGY 275 (423)
T ss_pred CcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCCCCeeeee--hhhhcCc
Confidence 3556666544 34556777641 4578999999999986 531 11111222 356555 9994 3
Q ss_pred CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 333 AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
-.+|.++.++++.+.+....+. .. ....++++ .|.....+..++++.+.++ + +.++..++.+++++.|.+
T Consensus 276 ~p~~av~~~~~i~~~~~~~~~~----~~-~~~~~T~~-~np~~~aaa~a~l~~l~~~-~---~~~~~~~~g~~l~~~l~~ 345 (423)
T PRK05964 276 LPLAATLCTAEIFEAFYSDDRA----KA-FMHSPSYT-ANPLACAAANASLDLFEDE-P---VLERVAALSAGLAEGLEP 345 (423)
T ss_pred ccceEEEEcHHHHHhhhcCCcc----cc-cccCCCCC-cCHHHHHHHHHHHHHHHhc-C---HHHHHHHHHHHHHHHHHh
Confidence 3588899999998765321000 00 00123333 4555677788889988765 3 456777888888888876
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
+
T Consensus 346 l 346 (423)
T PRK05964 346 F 346 (423)
T ss_pred h
Confidence 5
No 284
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=97.63 E-value=0.0001 Score=77.89 Aligned_cols=157 Identities=20% Similarity=0.227 Sum_probs=121.8
Q ss_pred hhHHHHHhhccccc-ccCCcEEeeecHhHhhhcC-CCCCceeeeee----cccCCCccCCCchhHHHHHHHHHHHHHhcC
Q psy8733 447 FFFGVIIAGAQKNI-GPAGITVVIVREDLLEYAL-PITPTVFHFKI----NADNNSVYNTPPTFVVHVIQRVFAWIKRQG 520 (621)
Q Consensus 447 ~~~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~-~~~p~~~~y~~----~~~~~s~~nTP~~~~iy~~~~vl~~~~~~g 520 (621)
+..|++.+|.||.+ ||+|+++++++++++++.. +..|..+++.. ..+.+++.+|||+..++.+...|+++.+.|
T Consensus 176 ~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g 255 (355)
T TIGR03301 176 LDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEG 255 (355)
T ss_pred cCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcc
Confidence 35688899999998 6999999999999998754 33343333221 123366788999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCCcccccCCC--------------CCc-ccHHHHHHHHHccCccccCCCC-CCccce
Q psy8733 521 GLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQA--------------GFP-LDELFLKEAKAHNMIQLKGHRL-VGGIRA 584 (621)
Q Consensus 521 g~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~--------------~~~-~~~~~~~~~~~~~i~~~~g~~~-~~~~r~ 584 (621)
+++...++.+++++.+++.+++. ++ .....+ ... ...++.+.++++||+...|++. .+.||+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~L~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRi 333 (355)
T TIGR03301 256 GVPARIARYRRNRELLVDGLRAL-GF-QPLLPERWQSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGKLTLADTFRI 333 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHc-CC-eeecCCCCCCCcEEEEECCCCCcchHHHHHHHHHHCCEEEECCccccccEEEE
Confidence 99999999999999999999875 32 211111 001 1246889999999998888754 478999
Q ss_pred eeccCCCHHHHHHHHHHHHHH
Q psy8733 585 SIYNAITVDEAVILVKFMKEF 605 (621)
Q Consensus 585 ~~~~a~~~~~~~~l~~~~~~~ 605 (621)
+.++.++.||++++++.|++.
T Consensus 334 s~~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 334 GTIGEIDAADIERLLEAIKDA 354 (355)
T ss_pred ecCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999763
No 285
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=97.63 E-value=0.0078 Score=69.58 Aligned_cols=139 Identities=12% Similarity=0.061 Sum_probs=92.9
Q ss_pred ceEEEEecccccccccccc-----cc---ccCCC--cEEEecccccCC-----------Cccc-----------------
Q psy8733 274 ASYLYYCDNETVDGVEFNY-----IP---DSQGI--PLVSDMSSNFLS-----------RKFD----------------- 315 (621)
Q Consensus 274 t~~V~~thnET~tGv~~p~-----i~---~~~g~--llvvDavSs~G~-----------~pID----------------- 315 (621)
+-.|..|...|.+|.+=|+ ++ +++|+ .++|||+-+-.. .|.+
T Consensus 279 ~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~ 358 (608)
T TIGR03811 279 ILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKE 358 (608)
T ss_pred eEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccc
Confidence 4567788889999999886 34 35676 599999754321 1110
Q ss_pred ------------ccccceEEeccccccC-CCccEEEEEchhHHhhhCCCCCceeeccccc-----cCCCccCCchHHHHH
Q psy8733 316 ------------VSKFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINA-----DNNSVYNTPPTFVVH 377 (621)
Q Consensus 316 ------------v~~~gvl~asaqK~lG-P~Glg~livr~~ll~~~~~~~P~~ld~~~~~-----~~~s~~~TP~v~~I~ 377 (621)
++..|-+....||++. |-+.|.+++|+..+.+.....+.|+.-.... ......++.+-+...
T Consensus 359 ~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~Al 438 (608)
T TIGR03811 359 YISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAA 438 (608)
T ss_pred cccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhcCcchhccccccCcccccccceecCCccHHHH
Confidence 2334578999999997 9999999999876544333334444211100 001112343335566
Q ss_pred HHHHHHHHH--HhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 378 VIQRVFAWI--KRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 378 aL~~aL~~i--~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
++-.+++.+ -.. |..++..+..++++++++.|.++
T Consensus 439 klW~~lr~l~~G~~-Gyg~~i~~~i~~A~~~~~~L~~~ 475 (608)
T TIGR03811 439 SVWAAHKVLPLNVT-GYGKLIGASIEGAHRFYDFLNNL 475 (608)
T ss_pred HHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 666788887 445 89999999999999999999986
No 286
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=97.62 E-value=0.02 Score=63.85 Aligned_cols=123 Identities=13% Similarity=0.171 Sum_probs=77.7
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC--ccccccc----ceEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR--KFDVSKF----GVIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~--pIDv~~~----gvl~asaqK~lGP~G- 334 (621)
+++.+|.+-......|+..|- +++++|+++|+|=+++ +|-. .+-.+.+ |+++.| |.+| .|
T Consensus 218 ~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~g--K~l~-~G~ 294 (443)
T PRK06058 218 DNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTA--KGIA-GGL 294 (443)
T ss_pred CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEc--cccc-CCC
Confidence 356666654444445666541 4568999999999986 4311 1111223 366665 9996 35
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.+. ...++++.. ..+..+..++|+.+.++ ++.++.+++.++|++.|+++
T Consensus 295 Pi~av~~~~~i~~~~~~~-----------~~~~T~~gn-pl~~aaa~a~L~~~~~~----~l~~~~~~~g~~l~~~L~~l 358 (443)
T PRK06058 295 PLSAVTGRAEIMDAPHPG-----------GLGGTYGGN-PVACAAALAAIETIEED----DLVARARQIEALMTDRLRAL 358 (443)
T ss_pred ccEEEEEcHHHHhhccCC-----------CCCCCCCCC-HHHHHHHHHHHHHHHHc----CHHHHHHHHHHHHHHHHHHH
Confidence 88999999987654220 123556543 44566777888988775 45566777788888888764
No 287
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=97.60 E-value=0.036 Score=61.35 Aligned_cols=123 Identities=20% Similarity=0.326 Sum_probs=78.0
Q ss_pred CCceEEEEeccccccccccc-c--------ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFN-Y--------IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p-~--------i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lGP~G- 334 (621)
++..+|.+-......|+..+ . +++++|+++|+|=+++ +|. ...-.+.++ +++ -=|.+| .|
T Consensus 197 ~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv~--~sK~l~-~G~ 273 (421)
T PRK06777 197 DQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLIT--MAKSLG-GGM 273 (421)
T ss_pred CceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEEe--eehhhc-CCC
Confidence 34566666555555575433 1 4568999999999977 321 122223333 443 458887 45
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.+. ...++++. |.....+..++|+.+.+. ++.++.+++.+++++.|+++
T Consensus 274 pigav~~~~~i~~~~~~~-----------~~~~T~~~-~p~~~aaa~a~L~~~~~~----~l~~~~~~~g~~l~~~L~~l 337 (421)
T PRK06777 274 PISAVVGRAEVMDAPAPG-----------GLGGTYAG-NPLAVAAALAVLDVIAEE----KLCQRALILGAHLVEVLEKA 337 (421)
T ss_pred ceEEEEEcHHHHhccCCC-----------CCCCCCCc-CHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHH
Confidence 78899999887654320 12345543 445577778888888664 56777888888888888875
No 288
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=97.58 E-value=0.055 Score=60.45 Aligned_cols=123 Identities=18% Similarity=0.241 Sum_probs=81.3
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCCc--cccccc----ceEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSRK--FDVSKF----GVIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~p--IDv~~~----gvl~asaqK~lGP~G- 334 (621)
+++++|.+....+.+|+..+- +++++|+++|+|=+++ +|..- +-.+.+ |++.. =|.+| .|
T Consensus 203 ~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitl--sK~l~-~G~ 279 (443)
T PRK08360 203 EGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITL--GKPLG-GGL 279 (443)
T ss_pred CCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEe--ccccc-CCc
Confidence 568888888777778987762 3568999999999976 43211 111122 35554 69997 45
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.. .....++..+|.. ..+..++|+.+.+. + +.++.+++.+++++.|+++
T Consensus 280 pigav~~~~~i~~~~~~-----------~~~~~T~~~~p~~-~aaa~a~l~~l~~~-~---l~~~~~~~g~~l~~~L~~l 343 (443)
T PRK08360 280 PISATIGRAEIMDSLPP-----------LAHAFTLSGNPVA-SAAALAVIEEIEEK-N---LLKRAEKLGNYTKKRLEEM 343 (443)
T ss_pred eeEEEEEcHHHHhhhcC-----------CCCCCCCCcCHHH-HHHHHHHHHHHHHc-C---HHHHHHHHHHHHHHHHHHH
Confidence 8999999988765531 0112344444444 67777888988765 3 4567777778888877764
No 289
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=97.55 E-value=0.05 Score=60.31 Aligned_cols=122 Identities=12% Similarity=0.219 Sum_probs=70.6
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCC--Cccccccc----ceEEeccccccCCCcc-
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKF----GVIIAGAQKNIGPAGI- 335 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~----gvl~asaqK~lGP~Gl- 335 (621)
++.+|.+-..-...|+..+- +++++|+++|+|-+++ +|- ..+-.+.+ |++++| |.+|+.|+
T Consensus 198 ~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t~~--K~l~~~G~p 275 (425)
T PRK09264 198 LPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLS--KSISGYGLP 275 (425)
T ss_pred ceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEEec--cccCCCccc
Confidence 34555544444445655431 4568999999999986 321 11111222 366665 99998785
Q ss_pred -EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHH-HHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 336 -TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVF-AWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 336 -g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL-~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
|.+++++++ .... + ....++++..| .+..+..+++ +++.+ +++.++.+++.+++++.|+++
T Consensus 276 igav~~~~~i-~~~~---~--------~~~~~T~~gnp-~~~aaa~a~l~~~~~~----~~l~~~~~~~g~~l~~~l~~l 338 (425)
T PRK09264 276 MALVLIKPEL-DVWK---P--------GEHNGTFRGNN-LAFVTATAALEEYWSD----DAFEKEVKAKGELVRERLEEI 338 (425)
T ss_pred eEEEEEchhh-hccC---C--------CccCCCCCCCH-HHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHH
Confidence 999999875 2211 1 01233443333 3344555677 44433 256667777778888877764
No 290
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=97.54 E-value=0.005 Score=67.12 Aligned_cols=128 Identities=19% Similarity=0.241 Sum_probs=81.9
Q ss_pred CCCCCceEEEEecccccccccccc---------ccccCCCcEEEecccccCCCcccc---cccc----eEEeccccccC-
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSRKFDV---SKFG----VIIAGAQKNIG- 331 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~~pIDv---~~~g----vl~asaqK~lG- 331 (621)
.++++|.+|.+=...--.|+..+- +++++|+++|+|=+|+=.++.=.+ +.+| ++. .-|.||
T Consensus 180 ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~t--laK~LgG 257 (404)
T COG4992 180 AIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILT--LAKALGG 257 (404)
T ss_pred HhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEE--eeccccC
Confidence 366788888876666666887763 467899999999999866554333 2233 333 349993
Q ss_pred CCccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 332 P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
--=+|.++.++...+.+. | -.++++|+--|. +..+..++|+.+.++ .+-++.+++.+++.+.|.
T Consensus 258 G~PigA~la~~~~~~~~~---~--------G~HgSTfGGNpL-acAv~~a~l~~l~~e----~ll~~v~~~g~~~~~~L~ 321 (404)
T COG4992 258 GFPIGAMLATEEIASAFT---P--------GDHGSTFGGNPL-ACAVALAVLEVLLEE----GLLENVREKGEYLLQRLR 321 (404)
T ss_pred CccceeeEEchhhhhcCC---C--------CcccCCCCcCHH-HHHHHHHHHHHHcch----hHHHHHHHHHHHHHHHHH
Confidence 122667777755433221 2 235678865444 445567789999876 344556677778888887
Q ss_pred ccC
Q psy8733 412 NSD 414 (621)
Q Consensus 412 ~~~ 414 (621)
++.
T Consensus 322 ~l~ 324 (404)
T COG4992 322 ELK 324 (404)
T ss_pred HHh
Confidence 763
No 291
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=97.52 E-value=0.0028 Score=70.39 Aligned_cols=130 Identities=8% Similarity=0.087 Sum_probs=74.1
Q ss_pred ceEEEEecccccc-cccccc--------ccccCCCcEEEecccccCCC-----------cccc--------cccceEEec
Q psy8733 274 ASYLYYCDNETVD-GVEFNY--------IPDSQGIPLVSDMSSNFLSR-----------KFDV--------SKFGVIIAG 325 (621)
Q Consensus 274 t~~V~~thnET~t-Gv~~p~--------i~~~~g~llvvDavSs~G~~-----------pIDv--------~~~gvl~as 325 (621)
+++|.+...-+.. |...+. +++++|+++|.|++..++.- ..++ +-.|.+++|
T Consensus 171 ~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S 250 (450)
T TIGR02618 171 IPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMS 250 (450)
T ss_pred cCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEe
Confidence 4455443333433 665442 45789999999999998641 2222 123589999
Q ss_pred cccccC-CCccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q psy8733 326 AQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSV 404 (621)
Q Consensus 326 aqK~lG-P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~ 404 (621)
++|-.+ |.|--++.-++++.++++.....+ +.-.+++-.+...+.++..+|+...+. ...++-...++
T Consensus 251 ~~Kd~~~~~GG~l~~~d~~l~~k~r~~~~~~-------eG~~tyGgla~r~~~ala~gL~e~~~~----~y~~~r~~~a~ 319 (450)
T TIGR02618 251 GKKDCLVNIGGFLCMNDDEMFQSAKELVVVF-------EGMPSYGGLAGRDMEAMAIGIREAVDY----EYIEHRVKQVR 319 (450)
T ss_pred eccCCCCCCceEEEeCCHHHHHHHHHHhhhc-------CCccccCchhhhhHHHHHHHHHHhhhH----HHHHHHHHHHH
Confidence 999996 877544445677777765433221 111233433333445555555543332 22233334567
Q ss_pred HHHHHHHccC
Q psy8733 405 LLYQEIDNSD 414 (621)
Q Consensus 405 ~L~e~L~~~~ 414 (621)
+|-+.|++.|
T Consensus 320 ~La~~L~~~G 329 (450)
T TIGR02618 320 YLGDKLKAAG 329 (450)
T ss_pred HHHHHHHHCC
Confidence 8888888774
No 292
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=97.52 E-value=0.0043 Score=67.58 Aligned_cols=132 Identities=14% Similarity=0.211 Sum_probs=74.8
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCc-----cc---cccc-c--eEEeccccccCC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRK-----FD---VSKF-G--VIIAGAQKNIGP 332 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~p-----ID---v~~~-g--vl~asaqK~lGP 332 (621)
+++.++.+++..|.||...+. +++++++++|.|-+-.-.... .. +... + +++.|-=|.+|+
T Consensus 171 ~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~ 250 (396)
T PRK09257 171 AGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGL 250 (396)
T ss_pred CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCcc
Confidence 345666668888999999884 346789999999764332211 11 1222 2 778999999999
Q ss_pred Cc--cEEEEE---chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHH------HHhhCCHHHHHHHHHH
Q psy8733 333 AG--ITVVIV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW------IKRQGGLAKMEQNSLQ 401 (621)
Q Consensus 333 ~G--lg~liv---r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~------i~~~gGl~~i~~r~~~ 401 (621)
+| +|++++ .++.+.++.. .+... ....+.+++.....++...|+. ..+. ++.+.++.++
T Consensus 251 ~GlRiG~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~--~~~~r~~~~~ 320 (396)
T PRK09257 251 YGERVGALSVVAEDAEEADRVLS------QLKAT--IRTNYSNPPAHGAAIVATILNDPELRAEWEAE--LEEMRERIKA 320 (396)
T ss_pred ccccceeEEEEeCCHHHHHHHHH------HHHHH--hhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHH--HHHHHHHHHH
Confidence 98 566653 2333322110 00000 0122334444444444433321 1122 5567777788
Q ss_pred HHHHHHHHHHcc
Q psy8733 402 KSVLLYQEIDNS 413 (621)
Q Consensus 402 la~~L~e~L~~~ 413 (621)
+.+.+++.|++.
T Consensus 321 rr~~l~~~L~~~ 332 (396)
T PRK09257 321 MRQLLVEALKAK 332 (396)
T ss_pred HHHHHHHHHHhc
Confidence 888888888876
No 293
>PRK15029 arginine decarboxylase; Provisional
Probab=97.50 E-value=0.0018 Score=76.32 Aligned_cols=129 Identities=16% Similarity=0.128 Sum_probs=82.6
Q ss_pred CceEEEEecccccccccccc--c---cccCCCcEEEeccccc--------CC-Ccc-----cccccc-eEEeccccccC-
Q psy8733 273 EASYLYYCDNETVDGVEFNY--I---PDSQGIPLVSDMSSNF--------LS-RKF-----DVSKFG-VIIAGAQKNIG- 331 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~--i---~~~~g~llvvDavSs~--------G~-~pI-----Dv~~~g-vl~asaqK~lG- 331 (621)
++++|.+|+ .|=.|+..++ | ++.++++++||-+-.. .. .++ .-..-| +++-|.||.|+
T Consensus 312 ~~~avvlt~-PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~a 390 (755)
T PRK15029 312 KPSYCVVTN-CTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA 390 (755)
T ss_pred CceEEEEEC-CCCcceeeCHHHHHHHHHhcCCeEEEECccccccccCccccccccccccccccCCCceEEEEchhhcccc
Confidence 444666654 5778999996 3 4578999999965432 10 112 101234 88889999995
Q ss_pred CCccEEEEEchh--HHhhhCCCCCceeeccccccCCCcc--CCchHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHH
Q psy8733 332 PAGITVVIVRED--LLEYALPITPTVFHFKINADNNSVY--NTPPTFVVHVIQRVFAWIKR-QGGLAKMEQNSLQKSVLL 406 (621)
Q Consensus 332 P~Glg~livr~~--ll~~~~~~~P~~ld~~~~~~~~s~~--~TP~v~~I~aL~~aL~~i~~-~gGl~~i~~r~~~la~~L 406 (621)
.+..+.+-++.+ .++ .....+.-.++ -+|+...+.+|..|..++.. . | +...++..+.+..+
T Consensus 391 lTQaS~LHv~~~~~~id-----------~~r~~~~l~~~qSTSPSY~LmASLD~ar~~m~~~~-G-~~l~~~~i~~~~~~ 457 (755)
T PRK15029 391 LSQASYIHVREGRGAIN-----------FSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNS-G-LSLTQEVIDEAVDF 457 (755)
T ss_pred hhhhhhheeCCCccccC-----------HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhh-h-HHHHHHHHHHHHHH
Confidence 887888877654 111 00000000112 36777788888888888876 4 4 55667778888899
Q ss_pred HHHHHccCC
Q psy8733 407 YQEIDNSDK 415 (621)
Q Consensus 407 ~e~L~~~~g 415 (621)
++.|.++++
T Consensus 458 r~~l~~~~~ 466 (755)
T PRK15029 458 RQAMARLYK 466 (755)
T ss_pred HHHHHhccc
Confidence 999988764
No 294
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=97.46 E-value=0.0025 Score=69.92 Aligned_cols=128 Identities=13% Similarity=0.177 Sum_probs=76.1
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCC-CcEEEecccc--cCCCcccccccceEEeccccccCCCc---cEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQG-IPLVSDMSSN--FLSRKFDVSKFGVIIAGAQKNIGPAG---ITVV 338 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g-~llvvDavSs--~G~~pIDv~~~gvl~asaqK~lGP~G---lg~l 338 (621)
+++++++|++=.-.|.+.-..|+ +++++| ++++||.+=+ +...|++.. .|+++.|+-|.++-.| .|++
T Consensus 137 l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~pL~~G-aDivv~S~TKyl~Ghsdv~~G~v 215 (386)
T PF01053_consen 137 LRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYNQNPLELG-ADIVVHSATKYLSGHSDVMGGAV 215 (386)
T ss_dssp HCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTTC-GGGGT--SEEEEETTTTTTTSSSE-EEEE
T ss_pred ccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceeeeccCcCC-ceEEEeeccccccCCcceeeEEE
Confidence 56789999887777777777775 346788 9999998743 333455442 3599999999996555 6677
Q ss_pred EEch--hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 339 IVRE--DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 339 ivr~--~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
++++ ++.+++.. +. ...-.++.....+.+...++ .+.-+.+++.+.+..|.+.|++.+.+
T Consensus 216 v~~~~~~~~~~l~~-------~~-----~~~G~~~~p~da~ll~rgl~------Tl~~R~~~~~~nA~~lA~~L~~hp~V 277 (386)
T PF01053_consen 216 VVNGSSELYDRLRE-------FR-----RLLGATLSPFDAWLLLRGLR------TLPLRMERQNENAEALAEFLEEHPKV 277 (386)
T ss_dssp EESSHHHHHHHHHH-------HH-----HHHT-B--HHHHHHHHHHHT------THHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred EECchhhhhhhhcc-------hh-----hhcCccchHHHHHHHhcCCC------cHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 7665 44443311 00 01112333333333322222 46677778888888999999987743
No 295
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=97.46 E-value=0.00023 Score=76.32 Aligned_cols=97 Identities=21% Similarity=0.243 Sum_probs=75.9
Q ss_pred hhHHHHHhhccccc-ccCCcEEeeecHhHhhhcCCCC-Cceeee----eecccCCCccCCCchhHHHHHHHHHHHHHhcC
Q psy8733 447 FFFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPIT-PTVFHF----KINADNNSVYNTPPTFVVHVIQRVFAWIKRQG 520 (621)
Q Consensus 447 ~~~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~~-p~~~~y----~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~g 520 (621)
+.+|++..|.||.+ ||.|++++++++++++...... |..+++ ....+++++..|||+..++.+...++++.+.|
T Consensus 182 ~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~ 261 (368)
T PRK13479 182 LGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEG 261 (368)
T ss_pred cCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhh
Confidence 35788889999987 6999999999999987644322 222221 11123466667999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcc
Q psy8733 521 GLAKMEQNSLQKSVLLYQEIDNS 543 (621)
Q Consensus 521 g~~~~~~~~~~ka~~lY~~id~~ 543 (621)
|++...++..++++.+.+.+++.
T Consensus 262 ~~~~~~~~~~~~~~~l~~~L~~~ 284 (368)
T PRK13479 262 GVPARGARYANNQRTLVAGMRAL 284 (368)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999889999988888888665
No 296
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=97.42 E-value=0.00027 Score=75.79 Aligned_cols=158 Identities=19% Similarity=0.224 Sum_probs=118.6
Q ss_pred hhHHHHHhhccccc-ccCCcEEeeecHhHhhhcCCCC-Cceee----eeecc-cCCCccCCCchhHHHHHHHHHHHHHhc
Q psy8733 447 FFFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPIT-PTVFH----FKINA-DNNSVYNTPPTFVVHVIQRVFAWIKRQ 519 (621)
Q Consensus 447 ~~~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~~-p~~~~----y~~~~-~~~s~~nTP~~~~iy~~~~vl~~~~~~ 519 (621)
...|++++|.||.+ ||.|+++++++++++++..+.. +..++ |+... .++....|||+..++.+...++++.+.
T Consensus 180 ~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~ 259 (363)
T TIGR02326 180 LHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKE 259 (363)
T ss_pred cCccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHh
Confidence 35789999999998 6999999999999987754322 21111 11111 122333489999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccCCcccccCCC-------------CC-c-ccHHHHHHHHHccCccccCCCC-CCccc
Q psy8733 520 GGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQA-------------GF-P-LDELFLKEAKAHNMIQLKGHRL-VGGIR 583 (621)
Q Consensus 520 gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~-------------~~-~-~~~~~~~~~~~~~i~~~~g~~~-~~~~r 583 (621)
||++.+.++..++++.+++.+++.. + .....+ .. . ....|.+.++++||....|+.. .+.||
T Consensus 260 g~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~~~~~iR 337 (363)
T TIGR02326 260 GGVAARHQRYQQNQKTLVAGMRALG-F-EPLLDDEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKVSQVDCFR 337 (363)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHcC-C-eeccCcccCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcCCCCCEEE
Confidence 9999999999999999999998752 1 111110 10 1 2245888999999998888755 56799
Q ss_pred eeeccCCCHHHHHHHHHHHHHHH
Q psy8733 584 ASIYNAITVDEAVILVKFMKEFR 606 (621)
Q Consensus 584 ~~~~~a~~~~~~~~l~~~~~~~~ 606 (621)
|+.+..++.|+++++++.|++..
T Consensus 338 i~~~~~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 338 IGNIGEVDAADITRLLTAIGKAM 360 (363)
T ss_pred EecCCCCCHHHHHHHHHHHHHHh
Confidence 99988999999999999998753
No 297
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=97.42 E-value=0.033 Score=61.34 Aligned_cols=130 Identities=13% Similarity=0.104 Sum_probs=75.4
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccccCCC--ccccccc----ceEEeccccccCCCc--
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSR--KFDVSKF----GVIIAGAQKNIGPAG-- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~~--pIDv~~~----gvl~asaqK~lGP~G-- 334 (621)
+++++|.+..+-..+|...+. +++++|+++|+|=+++-... ..-.+.+ |++ +-=|.+| .|
T Consensus 194 ~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~pDi~--t~sK~l~-~G~p 270 (423)
T TIGR00713 194 EEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEPDLT--TLGKIIG-GGLP 270 (423)
T ss_pred CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCcchh--hhhhhhc-CCCc
Confidence 467777775444447887762 35689999999999852211 1111112 233 3468887 56
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.+..+. ...++++. |.....+..++|+.+.+.+=++.+.+....+.+.|.+.+++.
T Consensus 271 ig~v~~~~~i~~~~~~~~~~--------~~~~T~~~-~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (423)
T TIGR00713 271 VGAFGGRREIMERLAPEGPV--------YQAGTLSG-NPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDT 340 (423)
T ss_pred eeeeeEHHHHHHhhCcCCCe--------eeccCCCC-CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 79999999988765421110 01234443 444566677789988765213455555555555555544444
No 298
>PRK06855 aminotransferase; Validated
Probab=97.41 E-value=0.011 Score=65.48 Aligned_cols=128 Identities=13% Similarity=0.211 Sum_probs=76.6
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccccC---CC-cccc----cccc-eEEeccccccCCCc
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL---SR-KFDV----SKFG-VIIAGAQKNIGPAG 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G---~~-pIDv----~~~g-vl~asaqK~lGP~G 334 (621)
++++++.+|+-.|.||...+. +++++++++|.|-+-+-. .. +..+ .+.. +.+.|-=|.++.||
T Consensus 170 ~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pG 249 (433)
T PRK06855 170 PSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPG 249 (433)
T ss_pred CCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCc
Confidence 467888888888999999884 346789999999875432 11 1222 1212 77888899999778
Q ss_pred --cEEEEEc-----hh---HHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCC----HHHHHHHHH
Q psy8733 335 --ITVVIVR-----ED---LLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGG----LAKMEQNSL 400 (621)
Q Consensus 335 --lg~livr-----~~---ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gG----l~~i~~r~~ 400 (621)
+|+++.. +. +++++. .. .....+++.+.-+++..++ .+ |. ++++.+..+
T Consensus 250 lRiG~ii~p~~~~~~~~~~~~~~~~-------~~------~~~~~~~~~~~Q~a~~~~l---~~-~~~~~~~~~~~~~~~ 312 (433)
T PRK06855 250 SRCGWIEVYNADKDEVFKKYINSIL-------NA------KMIEVCSTTLPQMAIPRIM---SH-PEYKNYLKERNKRYE 312 (433)
T ss_pred ceEEEEEEeCCchhhHHHHHHHHHH-------Hh------hccccCCChHHHHHHHHhh---cC-CcHHHHHHHHHHHHH
Confidence 6777762 21 111110 00 0011133444444443333 22 11 556667777
Q ss_pred HHHHHHHHHHHccCCc
Q psy8733 401 QKSVLLYQEIDNSDKF 416 (621)
Q Consensus 401 ~la~~L~e~L~~~~g~ 416 (621)
++.+.+++.|++++|+
T Consensus 313 ~r~~~~~~~L~~~~~~ 328 (433)
T PRK06855 313 KRSNIAYEKLKDVPGL 328 (433)
T ss_pred HHHHHHHHHHhcCCCe
Confidence 7788888888876544
No 299
>PRK05839 hypothetical protein; Provisional
Probab=97.39 E-value=0.014 Score=63.32 Aligned_cols=77 Identities=12% Similarity=0.181 Sum_probs=55.7
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC--Cc----cc------ccccc--eEEeccccc
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS--RK----FD------VSKFG--VIIAGAQKN 329 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~--~p----ID------v~~~g--vl~asaqK~ 329 (621)
+++++|++|+-.|+||...+. +++++++++|+|-+=.-.. .+ ++ .+.++ +++.|-=|.
T Consensus 154 ~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~ 233 (374)
T PRK05839 154 QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKR 233 (374)
T ss_pred ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccc
Confidence 368999999889999999884 2357899999998643211 01 11 12334 778889999
Q ss_pred cCCCc--cEEEEEchhHHhhh
Q psy8733 330 IGPAG--ITVVIVREDLLEYA 348 (621)
Q Consensus 330 lGP~G--lg~livr~~ll~~~ 348 (621)
+|.+| +|.++.++++.+++
T Consensus 234 ~~~~GlRiG~ii~~~~~~~~~ 254 (374)
T PRK05839 234 SSAPGLRSGFIAGDASILKKY 254 (374)
T ss_pred cCCccceeEEEecCHHHHHHH
Confidence 98777 78888888887755
No 300
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=97.39 E-value=0.053 Score=60.07 Aligned_cols=124 Identities=14% Similarity=0.263 Sum_probs=78.4
Q ss_pred CCceEEEEecccccccccc-cc--------ccccCCCcEEEecccccCCC---ccccccc----ceEEeccccccCC-Cc
Q psy8733 272 PEASYLYYCDNETVDGVEF-NY--------IPDSQGIPLVSDMSSNFLSR---KFDVSKF----GVIIAGAQKNIGP-AG 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~-p~--------i~~~~g~llvvDavSs~G~~---pIDv~~~----gvl~asaqK~lGP-~G 334 (621)
++.++|.+..+...+|+.. |. +++++|+++|+|=+++-.++ +.-.+.+ |++++ -|.+|+ -=
T Consensus 197 ~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi~t~--gK~l~~G~p 274 (421)
T PRK09792 197 KQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTM--AKSLAGGMP 274 (421)
T ss_pred CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcEEEe--ehhhcCCCc
Confidence 4577888877777778765 31 45689999999999773322 2222333 24444 588851 11
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.+ ....+++...|+ ...+..++++++.+. ...++.+++.+++.+.|+++
T Consensus 275 igav~~~~~i~~~~~~-----------~~~~~T~~gnpl-~~aaa~a~l~~l~~~----~~~~~~~~~g~~l~~~l~~l 337 (421)
T PRK09792 275 LSGVVGNANIMDAPAP-----------GGLGGTYAGNPL-AVAAAHAVLNIIDKE----SLCERANQLGQRLKNTLIDA 337 (421)
T ss_pred eEEEEEcHHHHhccCC-----------CCcCCCCCCCHH-HHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHH
Confidence 7888889888764421 112456655554 455666788988764 34556667777777777654
No 301
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=97.34 E-value=0.0035 Score=67.31 Aligned_cols=75 Identities=21% Similarity=0.302 Sum_probs=59.5
Q ss_pred CCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccc--cCCCcccccccceEEeccccccC--CCccEEEE
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSN--FLSRKFDVSKFGVIIAGAQKNIG--PAGITVVI 339 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs--~G~~pIDv~~~gvl~asaqK~lG--P~Glg~li 339 (621)
.++++||+|++=.-.|+.+.+.|+ +++++|++++||-+=+ ...+|++--. |+++-|.-||+| -..+|.++
T Consensus 143 aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl~rP~~hGA-DIVvHS~TK~igGhGt~iGG~i 221 (426)
T COG2873 143 AIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLCRPIEHGA-DIVVHSATKYIGGHGTAIGGVI 221 (426)
T ss_pred HhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcceecchhhcCC-CEEEEeecccccCCccccceEE
Confidence 488999999998888888888886 5678999999997644 4556766432 599999999996 66688888
Q ss_pred EchhH
Q psy8733 340 VREDL 344 (621)
Q Consensus 340 vr~~l 344 (621)
|...-
T Consensus 222 VD~G~ 226 (426)
T COG2873 222 VDGGK 226 (426)
T ss_pred EeCCc
Confidence 87654
No 302
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=97.33 E-value=0.038 Score=61.75 Aligned_cols=125 Identities=13% Similarity=0.175 Sum_probs=74.4
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCCC--cccccccc----eEEeccccccCC--Cc
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLSR--KFDVSKFG----VIIAGAQKNIGP--AG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~~--pIDv~~~g----vl~asaqK~lGP--~G 334 (621)
++.+|.+-..-...|+..| + +++++|+++|+|=+|+ +|-. -.-.+.+| +++. =|.+|- --
T Consensus 224 ~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~--gK~lg~G~~P 301 (442)
T TIGR03372 224 DVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCL--AKALGGGVMP 301 (442)
T ss_pred cEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeeee--hhhhcCCccc
Confidence 4566665555455577666 1 4568999999999985 4311 11122333 5554 588851 11
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.. .| + ...++++.. ..+.++..++|+.+.++ + +.++.+++.++|++.|.++
T Consensus 302 igavv~~~~i~~~~~~-~~-~-------~~~~T~~gn-p~~~Aaa~a~L~~i~~~-~---l~~~~~~~G~~l~~~L~~l 366 (442)
T TIGR03372 302 IGATIATEAVFSVLFD-NP-F-------LHTTTFGGN-PLACAAALATINELLEK-N---LPAQAAIKGDFLLDGFQQL 366 (442)
T ss_pred ceEEEecHHHHHhhhc-cC-c-------cccCCCCCC-HHHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHH
Confidence 6778889888765421 11 0 113444333 34556667789999876 3 4456677778888887764
No 303
>PLN00144 acetylornithine transaminase
Probab=97.32 E-value=0.09 Score=57.47 Aligned_cols=123 Identities=19% Similarity=0.207 Sum_probs=73.4
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccccCCC---ccc--cccc--ceEEeccccccCC-Cc
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSR---KFD--VSKF--GVIIAGAQKNIGP-AG 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~~---pID--v~~~--gvl~asaqK~lGP-~G 334 (621)
.+.++|.+..+.+..|+..+. +++++|+++|+|=+++-..+ +.- ...+ |++.+ =|.+|| -=
T Consensus 166 ~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PDi~t~--sK~l~~G~p 243 (382)
T PLN00144 166 GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTL--AKPLAGGLP 243 (382)
T ss_pred CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCCEEEe--cccccCCcc
Confidence 457777777665555665442 35689999999999873322 111 1111 24444 488852 11
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+|.++.++++.+.+.+ ....+++..+|. ...+..++|+++.+. + ..++.+++.+++++.|.+
T Consensus 244 ig~v~~~~~~~~~~~~-----------~~~~~T~~~~pl-~~aaa~a~l~~i~~~-~---~~~~~~~~g~~l~~~l~~ 305 (382)
T PLN00144 244 IGAVLVTEKVASAINP-----------GDHGSTFAGGPL-VCNAALAVLDKISKP-G---FLASVAKKGEYLRELLRR 305 (382)
T ss_pred eEEEEEcHHHHhccCC-----------CCCCCCCCCCHH-HHHHHHHHHHHHhhc-h---HHHHHHHHHHHHHHHHHH
Confidence 8899999888765432 012345554444 456777889999763 3 344555566666666554
No 304
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=97.31 E-value=0.00013 Score=78.47 Aligned_cols=79 Identities=16% Similarity=0.339 Sum_probs=35.1
Q ss_pred CCCCCceEEEEec--ccccccccccc-------ccccCCCcEEEecccc---------cCCCcccccc-----cceEEec
Q psy8733 269 NRDPEASYLYYCD--NETVDGVEFNY-------IPDSQGIPLVSDMSSN---------FLSRKFDVSK-----FGVIIAG 325 (621)
Q Consensus 269 ~i~~~t~~V~~th--nET~tGv~~p~-------i~~~~g~llvvDavSs---------~G~~pIDv~~-----~gvl~as 325 (621)
+++++|.++..+| |-.+.|..... +++++++++++|+.|. +..+| ++.+ .|++++|
T Consensus 132 AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep-~v~~~~~~GaDlV~fS 210 (367)
T PF03841_consen 132 AITENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEP-TVQEYLAAGADLVTFS 210 (367)
T ss_dssp -----------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT-----------CCCCT-SEEEEE
T ss_pred cccccccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCcccc-HHHHHhhcCCCEEEEE
Confidence 5788999998887 33455544332 4568999999999982 22322 3333 2499999
Q ss_pred cccccC-CCccEEEEEchhHHhhhC
Q psy8733 326 AQKNIG-PAGITVVIVREDLLEYAL 349 (621)
Q Consensus 326 aqK~lG-P~Glg~livr~~ll~~~~ 349 (621)
+-|.|| |. .|+++-|++++++++
T Consensus 211 GdKlLGGPQ-aGiI~Gkk~lI~~lk 234 (367)
T PF03841_consen 211 GDKLLGGPQ-AGIIVGKKELIEKLK 234 (367)
T ss_dssp TTSSSSS-S--EEEEEEHHHHHHHH
T ss_pred CCCcCCCCC-eEEEEeCHHHHHHHh
Confidence 999996 77 699999999999875
No 305
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=97.30 E-value=0.0058 Score=68.56 Aligned_cols=127 Identities=14% Similarity=0.172 Sum_probs=79.2
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccc---cCCCc----ccc---------cccc--eEEec
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSN---FLSRK----FDV---------SKFG--VIIAG 325 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs---~G~~p----IDv---------~~~g--vl~as 325 (621)
.++++|.+|+-.|+||...+. +++++++++|+|=+-+ +...+ +.+ +..+ +++.|
T Consensus 190 ~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S 269 (468)
T PLN02450 190 LKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYS 269 (468)
T ss_pred CCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEe
Confidence 478999999888999999884 2457899999998765 22211 111 1233 77888
Q ss_pred cccccCCCc--cEEEEEchhH-HhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHH---HHhhCCHHHHHHHH
Q psy8733 326 AQKNIGPAG--ITVVIVREDL-LEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW---IKRQGGLAKMEQNS 399 (621)
Q Consensus 326 aqK~lGP~G--lg~livr~~l-l~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~---i~~~gGl~~i~~r~ 399 (621)
-=|.+|.+| +|+++..++. .+.+.. ...++..+...-+++..+|+- ..+. ++...++.
T Consensus 270 ~SK~~~l~GlRiG~li~~~~~l~~~~~~--------------~~~~~~~s~~~Q~a~~~~L~~~~~~~~~--l~~~~~~l 333 (468)
T PLN02450 270 LSKDLGLPGFRVGAIYSNDEMVVSAATK--------------MSSFGLVSSQTQYLLSALLSDKKFTKNY--LEENQKRL 333 (468)
T ss_pred ccccCCCCCccEEEEEECCHHHHHHHHH--------------HhhcCCCCHHHHHHHHHHhCCchhHHHH--HHHHHHHH
Confidence 999999888 8888887554 332211 011222344444444444421 1111 45566777
Q ss_pred HHHHHHHHHHHHccC
Q psy8733 400 LQKSVLLYQEIDNSD 414 (621)
Q Consensus 400 ~~la~~L~e~L~~~~ 414 (621)
+++.+.+.+.|++++
T Consensus 334 ~~rr~~l~~~L~~~g 348 (468)
T PLN02450 334 KQRQKKLVSGLEAAG 348 (468)
T ss_pred HHHHHHHHHHHHHcC
Confidence 778888888888773
No 306
>KOG2467|consensus
Probab=97.30 E-value=0.0032 Score=67.39 Aligned_cols=284 Identities=13% Similarity=0.156 Sum_probs=161.2
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHH-HHHHHHHHHhCCC-CCCEEEEEcCCcchh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINN-DTQAALRELLNVP-NNYKILFLQGGGTGM 127 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~-~ar~~La~Ll~~p-~~yeI~f~~gggT~~ 127 (621)
.+-+.+.|.---.+.+|+|++...|+|-.+.|..- +.+.-+.+|.+.++ -++++-.+.|+.. +.+-|-.-+=||+-
T Consensus 40 ~~gieLIaSENFts~aVmeAlGS~ltNKYSEGyPG-~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSP- 117 (477)
T KOG2467|consen 40 KRGIELIASENFTSRAVMEALGSCLTNKYSEGYPG-ARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSP- 117 (477)
T ss_pred hcceeEeecccchHHHHHHHHhHHhhcccccCCCc-ccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCc-
Confidence 34566777777788999999999999866666532 12223567766554 4677888999994 44555555556666
Q ss_pred hhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccc
Q psy8733 128 FAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVS 207 (621)
Q Consensus 128 ~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~ 207 (621)
.|+-.+..=++++|+|.=++. +.| |+.+|....-.++.-++-+...+
T Consensus 118 -----ANfavYtall~Ph~RiMGLDL--------------P~G--------GHLsHGy~T~~kkISa~SiyFeS------ 164 (477)
T KOG2467|consen 118 -----ANFAVYTALLKPHERIMGLDL--------------PSG--------GHLSHGYQTPTKKISATSIYFES------ 164 (477)
T ss_pred -----hhhHHHhhhcCCCCeeeeccC--------------CCC--------CccccccccCCceeeeeeeeccc------
Confidence 477666555777777754431 222 33333221111111111111110
Q ss_pred cCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccc
Q psy8733 208 IPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 287 (621)
Q Consensus 208 ~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tG 287 (621)
+|- .-++ ..++-.....++.+..-.++++..-....+
T Consensus 165 mPY----kv~~-------------------------------------~TG~IDYD~Le~~A~~frPk~iiaG~SaY~-- 201 (477)
T KOG2467|consen 165 MPY----KVDP-------------------------------------STGYIDYDKLEKTATLFRPKLIIAGTSAYS-- 201 (477)
T ss_pred Cce----eeCC-------------------------------------CCCceehHHHHHHHHhcCCcEEEeccccch--
Confidence 000 0000 111100101111122223444433221111
Q ss_pred ccccc-----ccccCCCcEEEeccc-----ccCCCcccccccceEEecccccc-CCCccEEEEEchhHHhhhCCCC--Cc
Q psy8733 288 VEFNY-----IPDSQGIPLVSDMSS-----NFLSRKFDVSKFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPIT--PT 354 (621)
Q Consensus 288 v~~p~-----i~~~~g~llvvDavS-----s~G~~pIDv~~~gvl~asaqK~l-GP~Glg~livr~~ll~~~~~~~--P~ 354 (621)
-..|. |+++.|+.+++||+. +.+..|=+++-.|++.++.||.| ||.| |+++.|+..-. ..+.. +.
T Consensus 202 R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~DiVTTTTHKsLRGPRg-~mIFyRkGvk~-~~~k~g~~i 279 (477)
T KOG2467|consen 202 RLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYCDIVTTTTHKSLRGPRG-AMIFYRKGVKS-IKPKQGKEI 279 (477)
T ss_pred hhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccccceeeccccccccCCcc-eeEEEeccCCc-CCCCCCCcc
Confidence 12232 566789999999975 35667778888899999999999 8998 45555655422 11111 22
Q ss_pred eeecccccc---CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 355 VFHFKINAD---NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 355 ~ld~~~~~~---~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
..|+..... -++.-+-|--..|.+++.||+....- ......++..+.++.|-+.|.+.+
T Consensus 280 ~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tp-efk~Yq~qV~~Nakala~~l~~~G 341 (477)
T KOG2467|consen 280 LYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTP-EFKEYQKQVLKNAKALASALISRG 341 (477)
T ss_pred eechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCH-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334332111 12334566667899999999988765 577888888888888988888875
No 307
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=97.29 E-value=0.11 Score=58.06 Aligned_cols=121 Identities=17% Similarity=0.248 Sum_probs=73.0
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCCCc--cccccc----ceEEeccccccC-CCcc
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLSRK--FDVSKF----GVIIAGAQKNIG-PAGI 335 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~~p--IDv~~~----gvl~asaqK~lG-P~Gl 335 (621)
+..+|.+-..-...|+..| + +++++|+++|+|=+++ +|..- +-.+.+ |++.+| |.+| --.+
T Consensus 221 ~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~--K~l~~G~p~ 298 (441)
T PRK05769 221 EVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLA--KAIAGGLPL 298 (441)
T ss_pred ceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEc--ccccCCccc
Confidence 4555554444444577666 2 3568999999999987 43211 122333 356655 8885 1227
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
|.++.++++.+.. +. ...++++- +....++..++|+.+.+ ++.++.+++.++|++.|.++
T Consensus 299 gav~~~~~i~~~~----~~--------~~~~T~~g-~p~~~aaa~a~L~~l~~-----~~~~~~~~~g~~l~~~L~~l 358 (441)
T PRK05769 299 GAVIGRAELMFLP----PG--------SHANTFGG-NPVAAAAALATLEELEE-----GLLENAQKLGEYLRKELKEL 358 (441)
T ss_pred EEEEEehhhhhcC----CC--------CCCCCCCc-CHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 8888998875321 10 12345543 33445666678888864 44566777778888888764
No 308
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=97.25 E-value=0.014 Score=65.20 Aligned_cols=110 Identities=10% Similarity=0.094 Sum_probs=62.2
Q ss_pred ccccCCCcEEEecccccCCC-----------ccccc-------cc-ceEEeccccccC-CCccEEEEEc-hhHHhhhCCC
Q psy8733 293 IPDSQGIPLVSDMSSNFLSR-----------KFDVS-------KF-GVIIAGAQKNIG-PAGITVVIVR-EDLLEYALPI 351 (621)
Q Consensus 293 i~~~~g~llvvDavSs~G~~-----------pIDv~-------~~-gvl~asaqK~lG-P~Glg~livr-~~ll~~~~~~ 351 (621)
+++++|+++|.|++..++.. .-++. .+ |.+++|.+|.++ |.| |++..+ +++.++++..
T Consensus 206 lA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~G-G~i~t~D~eL~~~~r~~ 284 (460)
T PRK13237 206 LCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIG-GFLAMNDEELFDEAKEL 284 (460)
T ss_pred HHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCc-eEEEECCHHHHHHHHHh
Confidence 56789999999999999833 12221 23 489999999996 665 445554 5555665543
Q ss_pred CCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 352 TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 352 ~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++.| +.-.+|+..+.--+.+++.+|+...+. ...++-.+..++|-+.|++.|
T Consensus 285 ~~~~-------eG~~tygg~~grd~~alAvgl~E~~~~----~y~~~ri~~~~~l~~~L~~~G 336 (460)
T PRK13237 285 VVVY-------EGMPSYGGMAGRDMEAMAIGIEESVQY----EYIEHRVGQVRYLGEKLLAAG 336 (460)
T ss_pred cccc-------CCCcCCCChhhhHHHHHHhHHHhhchH----HHHHHHHHHHHHHHHHHHHCC
Confidence 2211 111233333333445555555433332 222333345567778887764
No 309
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=97.24 E-value=0.026 Score=63.08 Aligned_cols=130 Identities=15% Similarity=0.230 Sum_probs=84.8
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCC--Ccccccccc----eEEecccccc--C-C
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNI--G-P 332 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~l--G-P 332 (621)
++..+|.+-......|+..| + +++++|+++|+|=+|+ +|- ..+-.+.+| +++.| |.+ | .
T Consensus 217 ~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~~g--K~l~gG~~ 294 (445)
T PRK09221 217 STIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDIITFA--KGLTNGAI 294 (445)
T ss_pred CcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCEEEec--cccccCcc
Confidence 35666666666666788777 2 4568999999999974 542 233334443 66665 555 5 4
Q ss_pred CccEEEEEchhHHhhhCCCCCce-eeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 333 AGITVVIVREDLLEYALPITPTV-FHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~-ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|.+..++++.+.+... |.. .. ....++++++|+....++ ++|+.+.++ + +.++.+++.+++++.|+
T Consensus 295 P-i~av~~~~~i~~~~~~~-~~~~~~----~~~~~T~~~~pl~~aaa~-a~L~~i~~~-~---l~~~~~~~g~~l~~~l~ 363 (445)
T PRK09221 295 P-MGAVIASDEIYDAFMQG-PEYAIE----FFHGYTYSAHPVACAAGL-ATLDIYREE-D---LFERAAELAPYFEDAVH 363 (445)
T ss_pred c-ceeeEEcHHHHHhhccC-cccccc----cccccCCCcCHHHHHHHH-HHHHHHHhc-c---HHHHHHHHHHHHHHHHH
Confidence 4 67788899987765321 111 11 113467777777655554 899999876 3 46788888999999888
Q ss_pred ccC
Q psy8733 412 NSD 414 (621)
Q Consensus 412 ~~~ 414 (621)
++.
T Consensus 364 ~l~ 366 (445)
T PRK09221 364 SLK 366 (445)
T ss_pred hhc
Confidence 763
No 310
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=97.21 E-value=0.077 Score=59.60 Aligned_cols=125 Identities=14% Similarity=0.183 Sum_probs=77.0
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC--ccccccc----ceEEeccccccCC--Cc
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR--KFDVSKF----GVIIAGAQKNIGP--AG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~--pIDv~~~----gvl~asaqK~lGP--~G 334 (621)
++.+|.+-......|+..|- +++++|+++|+|=+|+ +|-. -.-.+.+ |+++. -|.+|- --
T Consensus 231 ~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~--gK~lggG~~P 308 (459)
T PRK11522 231 DVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCL--AKALGGGVMP 308 (459)
T ss_pred cEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEEEe--chhhhCCCcc
Confidence 45566655555556777661 4568999999999985 4310 0111223 35544 488851 12
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.... .| + ...++++..| .+..+..++|+.+.++ .+.++.+++.++|++.|.++
T Consensus 309 igav~~~~~i~~~~~~-~~-~-------~~~~T~~gnp-~~~Aaala~L~~i~~~----~l~~~~~~~g~~l~~~L~~l 373 (459)
T PRK11522 309 IGATIATEEVFSVLFD-NP-F-------LHTTTFGGNP-LACAAALATINVLLEQ----NLPAQAEQKGDYLLDGFRQL 373 (459)
T ss_pred ceeEEEcHHHHHHhcc-CC-c-------ccCCCCCCCH-HHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHHH
Confidence 7889999988764321 11 0 1234454333 4556666789999775 35678888889999988875
No 311
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=97.20 E-value=0.031 Score=61.39 Aligned_cols=123 Identities=12% Similarity=0.148 Sum_probs=78.7
Q ss_pred CCCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cC-------CCcccccccceEEeccccccC-C
Q psy8733 271 DPEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FL-------SRKFDVSKFGVIIAGAQKNIG-P 332 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G-------~~pIDv~~~gvl~asaqK~lG-P 332 (621)
.+++++|.+-......|+..| + +++++|+++|+|-+++ +| +...++ +-|+++.| |.+| .
T Consensus 177 ~~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv-~PDi~t~g--K~lg~G 253 (395)
T PRK03715 177 TDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGI-EPDIMTLG--KGIGGG 253 (395)
T ss_pred CCCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCC-CCceeeeh--hhhhCC
Confidence 356788888888777788765 2 4568999999999987 21 111122 12466665 9994 1
Q ss_pred CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 333 AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
--+|.+..++++.. . .+. ...++|+- +.....+..++|+.+.+. .+.++.+++.++|++.|.+
T Consensus 254 ~p~~av~~~~~i~~-~---~~~--------~~~~T~~g-~pl~~aaala~L~~l~~~----~l~~~~~~~g~~l~~~L~~ 316 (395)
T PRK03715 254 VPLAALLAKAEVAV-F---EAG--------DQGGTYNG-NPLMTAVGVAVISQLLAP----GFLEGVRARGEYLKEKLLE 316 (395)
T ss_pred cceEEEEEcccccc-c---cCC--------CcCCCCCC-CHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHH
Confidence 22777788888741 1 111 12345543 344567777889998764 3566777788888888876
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
+
T Consensus 317 l 317 (395)
T PRK03715 317 L 317 (395)
T ss_pred H
Confidence 4
No 312
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=97.16 E-value=0.18 Score=55.94 Aligned_cols=124 Identities=19% Similarity=0.236 Sum_probs=75.9
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEecccccCCC---cccccccce--EEeccccccCCCc--cE
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSNFLSR---KFDVSKFGV--IIAGAQKNIGPAG--IT 336 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs~G~~---pIDv~~~gv--l~asaqK~lGP~G--lg 336 (621)
+..+|.+-..-...|+..| + +++++|+++|+|=+++-..+ .+-.+.+|+ =+.+-=|.+| .| +|
T Consensus 207 ~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg-~G~pig 285 (433)
T PRK08117 207 EVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIA-SGLPLS 285 (433)
T ss_pred cEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCEeehhhhcc-CCCcce
Confidence 4555554444444566666 2 45689999999999873212 111233331 1245569997 35 78
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
.++.++++.+.... ....++++ .|.....+..++|+.+.+. .+.++.+++.+++++.|+++
T Consensus 286 av~~~~~i~~~~~~-----------~~~~~T~~-~np~~~aaa~a~L~~l~~~----~l~~~~~~~g~~l~~~L~~l 346 (433)
T PRK08117 286 AVVASKELMEQWPL-----------GSHGTTFG-GNPVACAAALATLEVIKEE----KLLDNANEMGAYALERLEVL 346 (433)
T ss_pred eEEEcHHHHhhccC-----------CCCCCCCC-cCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHH
Confidence 89999988765421 01233443 3555677778889988654 34556677777888887765
No 313
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=97.08 E-value=0.32 Score=54.43 Aligned_cols=123 Identities=15% Similarity=0.297 Sum_probs=78.0
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccccCCCc---ccccccc----eEEeccccccC-CCcc
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSRK---FDVSKFG----VIIAGAQKNIG-PAGI 335 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~~p---IDv~~~g----vl~asaqK~lG-P~Gl 335 (621)
+..++.+=......|+..|- +++++|+++|+|=+|+=.++. +-++.+| +++.| |.+| --=+
T Consensus 222 ~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~a--K~ig~G~Pl 299 (447)
T COG0160 222 EVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLA--KSLGGGLPL 299 (447)
T ss_pred ceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEec--ccccCCCce
Confidence 45555554444555777662 457899999999999844332 3334444 66665 8884 2227
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+.++.|+++.+ .. |. ....+|+--| .+..+..++|+.|.++ ++.+|..++.++|++.|.++.
T Consensus 300 ~avv~r~ei~~-~~---~g--------~~~~Tf~GNp-va~Aaa~AvL~vie~e----~L~~~a~~~G~~l~~~L~~l~ 361 (447)
T COG0160 300 SAVVGRAEIMD-WP---PG--------GHGGTFGGNP-VACAAALAVLDVIEEE----NLLERAAELGEYLRDRLEELQ 361 (447)
T ss_pred eEEeccHHhcc-cC---Cc--------ccCCCCCcCH-HHHHHHHHHHHHHHHc----cHHHHHHHHHHHHHHHHHHHH
Confidence 88999988864 21 11 1123343223 3455666788888775 567778888899999998764
No 314
>KOG0259|consensus
Probab=97.06 E-value=0.13 Score=55.85 Aligned_cols=51 Identities=29% Similarity=0.332 Sum_probs=41.6
Q ss_pred cHHH-HHHHHHccCccccCC--CCCCccceeeccCCCHHHHHHHHHHHHHHHHHcC
Q psy8733 558 DELF-LKEAKAHNMIQLKGH--RLVGGIRASIYNAITVDEAVILVKFMKEFRHKHS 610 (621)
Q Consensus 558 ~~~~-~~~~~~~~i~~~~g~--~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~~ 610 (621)
+..| -+.++|+.++.+-|- +-.|=+||++ +++.+.++.-...|++|..+|+
T Consensus 382 D~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i--~~~~~~leea~~Rik~Fc~RH~ 435 (447)
T KOG0259|consen 382 DVDFCQKLAREESVICLPGQAFGLKNWLRIVI--TVEEEMLEEAFSRIKEFCDRHS 435 (447)
T ss_pred cHHHHHHHhhhcceEEeccccccCCCeEEEEE--ccChHHHHHHHHHHHHHHHhhh
Confidence 4456 577889999977665 4588899998 6788888888999999999998
No 315
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=97.05 E-value=0.047 Score=59.06 Aligned_cols=137 Identities=11% Similarity=0.119 Sum_probs=86.3
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccc----cCCCccccc-------ccceEEecccccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSN----FLSRKFDVS-------KFGVIIAGAQKNI 330 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs----~G~~pIDv~-------~~gvl~asaqK~l 330 (621)
.+...++..+|+-.|.+|..+.. ++++||+++|.|=.-+ .|+..+.+. +.-+.++|+-|.+
T Consensus 155 ~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtF 234 (388)
T COG1168 155 VDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTF 234 (388)
T ss_pred hcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccc
Confidence 34557899999999999999873 4678999999997654 232333332 2238888889999
Q ss_pred CCCc--cEEEEEchhHH-hhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q psy8733 331 GPAG--ITVVIVREDLL-EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLY 407 (621)
Q Consensus 331 GP~G--lg~livr~~ll-~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~ 407 (621)
.-+| .+.++++++.+ .+. ++... ....+-||.+++.|..+|.+.=..- ++++.+..+...+++.
T Consensus 235 NlaGL~~a~~Ii~n~~lr~~~---------~~~l~--~~~~~~~n~lg~~A~~aAY~~G~~W--Ld~L~~yl~~N~~~~~ 301 (388)
T COG1168 235 NLAGLKCAYIIISNRELRAKF---------LKRLK--RNGLHGPSALGIIATEAAYNQGEPW--LDELLEYLKDNRDYVA 301 (388)
T ss_pred cchhhhheeEEecCHHHHHHH---------HHHHH--HhcCCCCchHHHHHHHHHHHhchHH--HHHHHHHHHHHHHHHH
Confidence 7666 45566665543 221 11111 2234567888888877776532211 5555666666667777
Q ss_pred HHHHc-cCCcccC
Q psy8733 408 QEIDN-SDKFYEC 419 (621)
Q Consensus 408 e~L~~-~~g~~~~ 419 (621)
+.+.+ +|++...
T Consensus 302 ~~l~~~~P~v~v~ 314 (388)
T COG1168 302 DFLNKHLPGVKVT 314 (388)
T ss_pred HHHHhhCCCcEEe
Confidence 77766 4555443
No 316
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=97.02 E-value=0.24 Score=56.40 Aligned_cols=130 Identities=12% Similarity=0.123 Sum_probs=78.1
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEeccc-ccCCC--ccccccc----ceEEeccccccC--CCc
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSS-NFLSR--KFDVSKF----GVIIAGAQKNIG--PAG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavS-s~G~~--pIDv~~~----gvl~asaqK~lG--P~G 334 (621)
+..+|.+=..-...|+..| + +++++|+++|+|=++ ++|-. -.-.+.+ |++++| |.+| ---
T Consensus 260 ~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~lggG~~P 337 (504)
T PLN02760 260 TIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLA--KALSSAYMP 337 (504)
T ss_pred ceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEEec--ccccCCccc
Confidence 3455554444444577766 2 467899999999999 46431 1111223 355554 8884 112
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.+..+.. ......++|+..|+ +..+..++|+.+.++ ++.++.+++.++|++.|.++
T Consensus 338 igAv~~~~~i~d~~~~~~~~~----~~~~h~~T~~gnPl-~~Aaala~Le~i~~~----~l~~~~~~~g~~l~~~L~~l 407 (504)
T PLN02760 338 IGAVLVSPEISDVIHSQSNKL----GSFAHGFTYSGHPV-SCAVALEALKIYKER----NIPEHVNKIAPRFQDGIKAF 407 (504)
T ss_pred cceEeecHHHHhhhhcccccc----cCcccCCCCCCCHH-HHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHHH
Confidence 677899999877653211100 00113466766444 455666779998875 35677778888888888764
No 317
>PRK08354 putative aminotransferase; Provisional
Probab=96.99 E-value=0.11 Score=54.86 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=46.1
Q ss_pred CceEEEEecccccccccccc--------ccccCCCcEEEecccccCC-Ccccccccc--eEEeccccccCCCc--cEEEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS-RKFDVSKFG--VIIAGAQKNIGPAG--ITVVI 339 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~-~pIDv~~~g--vl~asaqK~lGP~G--lg~li 339 (621)
+++.+.+|+-.|.||...+. +++++++++|+|-+=.-.. ..-..+ .+ +++.|-=|.+|.+| +|+++
T Consensus 117 ~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~-~~~vi~~~S~SK~~~l~GlRiG~~v 195 (311)
T PRK08354 117 RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESPE-GENIIKLRTFTKSYGLPGIRVGYVK 195 (311)
T ss_pred CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccccC-CCcEEEEeccHhhcCCccceeeeee
Confidence 45678888888999998883 2456899999998752211 110111 23 66778899999888 58777
Q ss_pred E
Q psy8733 340 V 340 (621)
Q Consensus 340 v 340 (621)
.
T Consensus 196 ~ 196 (311)
T PRK08354 196 G 196 (311)
T ss_pred e
Confidence 6
No 318
>PRK13578 ornithine decarboxylase; Provisional
Probab=96.97 E-value=0.013 Score=68.77 Aligned_cols=137 Identities=7% Similarity=-0.005 Sum_probs=83.4
Q ss_pred ceEEEEecccccccccccc--c----cccCCCcEEEecccccCCC---c---------ccccccc----eEEeccccccC
Q psy8733 274 ASYLYYCDNETVDGVEFNY--I----PDSQGIPLVSDMSSNFLSR---K---------FDVSKFG----VIIAGAQKNIG 331 (621)
Q Consensus 274 t~~V~~thnET~tGv~~p~--i----~~~~g~llvvDavSs~G~~---p---------IDv~~~g----vl~asaqK~lG 331 (621)
.+++.+| +.|=.|+..++ | ++.++ ++++|-+-. ++. | ++.. -| +++-|.||.|+
T Consensus 283 ~k~vvit-~pTYdG~~ydi~~I~~~~~h~~~-~llvDEAhg-ah~~F~p~~~~~p~~al~~G-aD~p~i~v~QStHKtL~ 358 (720)
T PRK13578 283 FRLAVIQ-LGTYDGTIYNARQVVDKIGHLCD-YILFDSAWV-GYEQFIPMMADCSPLLLELN-ENDPGIFVTQSVHKQQA 358 (720)
T ss_pred ceEEEEE-CCCCcceeecHHHHHHHhhccCC-cEEEeCcch-hhhccCcccccCChhhhhcC-CCCCCeEEEEChhhcch
Confidence 5666665 45788999996 2 44567 899995432 111 2 1111 13 89999999995
Q ss_pred -CCccEEEEEchhHHhhhCCCCCceeeccccccCCCcc--CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q psy8733 332 -PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVY--NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 332 -P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~--~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e 408 (621)
-+..+.+-++++.++.-+ .+++.....+.-.++ -+|+...+++|..+..++....| +.+.++..+++..+|+
T Consensus 359 alTQaS~LHvk~~~i~g~~----~~v~~~r~~~al~m~qSTSPsY~LmASLDva~~~m~~~~G-~~l~~~~i~~a~~~R~ 433 (720)
T PRK13578 359 GFSQTSQIHKKDNHIKGQA----RYCPHKRLNNAFMLHASTSPFYPLFAALDVNAKMHEGESG-RRLWMECVKLGIEARK 433 (720)
T ss_pred hhhhHhhhhcCCccccccc----ccCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHH
Confidence 887888887765432100 111111111101111 25667777778888888876435 5677778888899999
Q ss_pred HH-HccCCcccC
Q psy8733 409 EI-DNSDKFYEC 419 (621)
Q Consensus 409 ~L-~~~~g~~~~ 419 (621)
.| +.+++|...
T Consensus 434 ~l~~~~~~~~~~ 445 (720)
T PRK13578 434 LILARCKLIRPF 445 (720)
T ss_pred HHHHhCCCeeec
Confidence 88 777766544
No 319
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=96.97 E-value=0.34 Score=54.14 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=74.8
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCCc--cccccc----ceEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSRK--FDVSKF----GVIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~p--IDv~~~----gvl~asaqK~lGP~G- 334 (621)
+++.+|.+-..-...|+..|- +++++|+++|+|=+++ +|..- .-.+.+ |+++. -|.+| .|
T Consensus 206 ~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~--gK~l~-~G~ 282 (445)
T PRK08593 206 DEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSF--GKSLA-GGM 282 (445)
T ss_pred CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEeee--ccccc-CCc
Confidence 356666655554555776551 4568999999999974 53211 111222 34544 47774 22
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.+..++++.+.+.+ + ....++.-+| ....+..++|+.+.++ ++.++.+++.++|++.|.++
T Consensus 283 p~gav~~~~~i~~~~~~--~---------~~~~T~~~~p-l~~aaa~a~l~~l~~~----~l~~~~~~~g~~l~~~L~~l 346 (445)
T PRK08593 283 PMSAIVGRKEIMESLEA--P---------AHLFTTGANP-VSCAAALATIDMIEDE----SLLQRSAEKGEYARKRFDQW 346 (445)
T ss_pred ccEEEEEcHHHHhhhcc--C---------CCCCCCCCCH-HHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHH
Confidence 7889999998765421 1 1123444333 4566777889998775 45666777777888877764
No 320
>KOG1368|consensus
Probab=96.93 E-value=0.013 Score=61.41 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=39.5
Q ss_pred HHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHH-HHHHHHc
Q psy8733 559 ELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFM-KEFRHKH 609 (621)
Q Consensus 559 ~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~-~~~~~~~ 609 (621)
+++-+.++++||..+.|-.. ++|+.++-.+|+|+++.++.++ ++|....
T Consensus 321 ~~l~~~~~k~gi~lm~~~s~--r~Rivlh~Qvt~~~ve~~~~~~~k~~~~q~ 370 (384)
T KOG1368|consen 321 EELCKFLEKNGILLMGGASR--RIRIVLHHQVTDEDVEYVKSVLSKKFLKQL 370 (384)
T ss_pred HHHHHHHHHCCeEEeecccc--ceEEEEEEecCHHHHHHHHHHHHHHHHhhc
Confidence 34677889999998776433 3999999999999999999999 6666543
No 321
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=96.92 E-value=0.19 Score=55.61 Aligned_cols=124 Identities=14% Similarity=0.108 Sum_probs=73.5
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccccCCCcccc---cccc--eEEeccccccCCCc--cE
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSRKFDV---SKFG--VIIAGAQKNIGPAG--IT 336 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~~pIDv---~~~g--vl~asaqK~lGP~G--lg 336 (621)
+..+|.+.......|+..+- +++++|+++|+|=+++-..+.=.+ ..++ .-+.+-=|.+| .| +|
T Consensus 187 ~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~-~G~pig 265 (408)
T PRK04612 187 DVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALG-GGFPIG 265 (408)
T ss_pred CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcchhc-CCCceE
Confidence 44555544444444555431 456899999999998733221111 1112 22334458886 23 78
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
.++.++++.+.+.. ....+++. .+.....+..++|+.+.+. ++.++.+++.+++++.|.++
T Consensus 266 a~~~~~~~~~~~~~-----------~~~~~t~~-~~p~~~aaa~a~L~~~~~~----~l~~~~~~~g~~l~~~l~~l 326 (408)
T PRK04612 266 AMLAGPKVAETMQF-----------GAHGTTFG-GNPLAAAVARVALRKLASP----QIAANVARQSAALRAGLEAL 326 (408)
T ss_pred EEEECHHHHhhhcC-----------CCcCCCCC-CCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHH
Confidence 88888887654421 01223443 4456667777888988765 45667777788888888765
No 322
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=96.83 E-value=0.42 Score=53.35 Aligned_cols=122 Identities=14% Similarity=0.258 Sum_probs=75.9
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lGP~G- 334 (621)
.+..+|.+-......|+..+- +++++|+++|+|=+++ +|- ..+-.+.+| +++. =|.+|- |
T Consensus 205 ~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~~-G~ 281 (442)
T TIGR00709 205 DKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVM--SKAVGG-GL 281 (442)
T ss_pred CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEE--cccccC-Cc
Confidence 356666666666666766541 4568999999999987 542 222233343 5554 488842 2
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.+..+++ .+... +. ...++++ .|..+..+..++|+.+.++ + +.++.+++.++|++.|+++
T Consensus 282 Pigav~~~~~-~~~~~---~~--------~~~~T~~-gnpla~aaa~a~L~~i~~~-~---l~~~~~~~g~~l~~~L~~l 344 (442)
T TIGR00709 282 PLAVLLIAPE-FDAWQ---PA--------GHTGTFR-GNQLAMVTGTEALNYWKDD-N---LAQNAQERGERITSFLDDM 344 (442)
T ss_pred ccEEEEEchH-HhccC---CC--------cCCCCCC-cCHHHHHHHHHHHHHHHhc-C---HHHHHHHHHHHHHHHHHHH
Confidence 788888887 43221 10 1234554 4445567778889988775 4 4456777778888888764
No 323
>KOG1402|consensus
Probab=96.77 E-value=0.17 Score=53.90 Aligned_cols=252 Identities=16% Similarity=0.228 Sum_probs=148.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhcc
Q psy8733 61 KLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSM 140 (621)
Q Consensus 61 ~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~ 140 (621)
...+-+++++++...... ++.| ..+.+.+.+-.+.+.+||+-. .|+-| ++|-++.|. |+-|.+.|-
T Consensus 75 hchpki~~aLqeq~~kLt--------lssr-afYnd~~~~f~~~vt~lf~~~---kvlpm-nTGaEa~Et-a~KLaR~wg 140 (427)
T KOG1402|consen 75 HCHPKIIKALQEQADKLT--------LSSR-AFYNDVLGEFAEYVTKLFGYD---KVLPM-NTGAEAVET-ACKLARKWG 140 (427)
T ss_pred CCCHHHHHHHHHHHhHhh--------hhhH-HHhhhhHHHHHHHHHHhcCcc---eeeec-ccchhHHHH-HHHHHHHHH
Confidence 467889999998864321 2222 234567778888899999864 36666 667887776 666655432
Q ss_pred ----CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCC
Q psy8733 141 ----NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNR 216 (621)
Q Consensus 141 ----~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~ 216 (621)
++|++..|++.- .-|+.+ .....|..+.=...| +++|-- -
T Consensus 141 y~~K~ip~nka~il~~----------~~nFhG--rT~~ais~s~d~ds~----~~fgp~--------------------~ 184 (427)
T KOG1402|consen 141 YRKKNIPKNKAKILSA----------ENNFHG--RTLGAISLSTDPDSW----DGFGPF--------------------L 184 (427)
T ss_pred HhhccCCccceeEEEe----------cccccC--ceeeeEEecCCcchh----hccCCC--------------------C
Confidence 567666666543 235542 222222211111112 233310 0
Q ss_pred CCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc----
Q psy8733 217 DPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY---- 292 (621)
Q Consensus 217 ~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~---- 292 (621)
...+++++|.+ .++.+....+++.+...+-.-.--.|++.|-
T Consensus 185 P~~~~~v~Y~d----------------------------------~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL 230 (427)
T KOG1402|consen 185 PGVVDKVPYGD----------------------------------AEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYL 230 (427)
T ss_pred CCcceeeccCC----------------------------------HHHHHHHhcCCCeeEEEeeccccccceEeCCchhH
Confidence 01134443322 1111111123566666655555556888873
Q ss_pred -----ccccCCCcEEEecccccCCCc-----cccccc--ceEEecccccc--CCCccEEEEEchhHHhhhCCCCCceeec
Q psy8733 293 -----IPDSQGIPLVSDMSSNFLSRK-----FDVSKF--GVIIAGAQKNI--GPAGITVVIVREDLLEYALPITPTVFHF 358 (621)
Q Consensus 293 -----i~~~~g~llvvDavSs~G~~p-----IDv~~~--gvl~asaqK~l--GP~Glg~livr~~ll~~~~~~~P~~ld~ 358 (621)
++.++++++|+|=+|+=.++. +|.++. |++..+ |.| |--=++.++.+++++....|
T Consensus 231 ~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDivilg--KalSGG~~Pvsavl~~~~im~~~~p-------- 300 (427)
T KOG1402|consen 231 KKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIVILG--KALSGGVYPVSAVLADDDIMLNIKP-------- 300 (427)
T ss_pred HHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeEEEe--ccccCCeeeeEEEEecHHHHhccCC--------
Confidence 345899999999999876654 344433 355554 777 33337778888888754322
Q ss_pred cccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 359 KINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 359 ~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
-+++++|+--|. +..+.-++|+.|.++ ++-+|...+...+++.|.+++
T Consensus 301 ---geHgsTyggNpL-g~~vaiAalevi~ee----kL~era~~lG~~l~~~L~~l~ 348 (427)
T KOG1402|consen 301 ---GEHGSTYGGNPL-GCAVAIAALEVIVEE----KLVERAAKLGEILRDQLNKLQ 348 (427)
T ss_pred ---CccccccCCChH-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcc
Confidence 235778864333 444556789999886 778888999999999999876
No 324
>PRK06917 hypothetical protein; Provisional
Probab=96.75 E-value=0.46 Score=53.19 Aligned_cols=125 Identities=12% Similarity=0.177 Sum_probs=73.8
Q ss_pred CceEEEEecccc-cccccccc---------ccccCCCcEEEecccc-cCCCcccc---ccc----ceEEeccccccC--C
Q psy8733 273 EASYLYYCDNET-VDGVEFNY---------IPDSQGIPLVSDMSSN-FLSRKFDV---SKF----GVIIAGAQKNIG--P 332 (621)
Q Consensus 273 ~t~~V~~thnET-~tGv~~p~---------i~~~~g~llvvDavSs-~G~~pIDv---~~~----gvl~asaqK~lG--P 332 (621)
++.+|.+-.... ..|+..|- +++++|+++|+|=+++ +| +.=.+ +.+ |+++. -|.+| -
T Consensus 199 ~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfG-RtG~~~a~~~~gv~PDi~~~--gK~l~~G~ 275 (447)
T PRK06917 199 HIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLG-RTGAMFAMEHWGVEPDIMTL--GKGLGAGY 275 (447)
T ss_pred ceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcC-cccchhhHHhcCCCCCEEEe--eehhccCC
Confidence 455555544333 23465552 4568999999999987 32 21111 223 35555 48884 2
Q ss_pred -CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 333 -AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 333 -~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| ++.+..++++.+...+....+ -..++++-.|+ ...+..++|+.+.+. + +.++.+++.++|++.|+
T Consensus 276 ~P-i~a~~~~~~i~~~~~~~~~~~-------~~~~T~~gnpl-~~aaa~a~l~~l~~~-~---l~~~~~~~g~~l~~~L~ 342 (447)
T PRK06917 276 TP-IAATVVSDRVMEPILRGSRSI-------MSGHTLSANPL-SAATALAVLEYMEKH-N---LPEKAAEKGEYLIKGLQ 342 (447)
T ss_pred cc-eEEEEEcHHHHHHHhccCccc-------ccccCCCCCHH-HHHHHHHHHHHHHHC-C---HHHHHHHHHHHHHHHHH
Confidence 3 788888999876543211111 12345543334 467777889998765 3 45667777777877777
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
++
T Consensus 343 ~l 344 (447)
T PRK06917 343 KV 344 (447)
T ss_pred HH
Confidence 64
No 325
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=96.72 E-value=0.0011 Score=70.07 Aligned_cols=77 Identities=17% Similarity=0.308 Sum_probs=51.2
Q ss_pred CCceEEEEeccccc-ccccccc--------ccccCCCcEEEecc------cccCCCcccccc-cceEEeccccccCCCcc
Q psy8733 272 PEASYLYYCDNETV-DGVEFNY--------IPDSQGIPLVSDMS------SNFLSRKFDVSK-FGVIIAGAQKNIGPAGI 335 (621)
Q Consensus 272 ~~t~~V~~thnET~-tGv~~p~--------i~~~~g~llvvDav------Ss~G~~pIDv~~-~gvl~asaqK~lGP~Gl 335 (621)
+.+++|+++...+. .|...+. +++++|+++++|++ .+.+..+=++.+ +|.+++|..|++|.++=
T Consensus 123 ~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~~G 202 (290)
T PF01212_consen 123 PQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIAAGADSVSFGGTKNGGAPGG 202 (290)
T ss_dssp GGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SSSE
T ss_pred CCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHhhhCCEEEEEEEcccccccc
Confidence 46788888765443 3777764 45689999999997 223333333332 46999999999997777
Q ss_pred EEEEEchhHHhhh
Q psy8733 336 TVVIVREDLLEYA 348 (621)
Q Consensus 336 g~livr~~ll~~~ 348 (621)
++|+.+++.+++.
T Consensus 203 avl~~~~~~i~~~ 215 (290)
T PF01212_consen 203 AVLAGNKEFIAKA 215 (290)
T ss_dssp EEEEESHHHHHHH
T ss_pred eEEEechHHHHHH
Confidence 9999999977654
No 326
>PRK07678 aminotransferase; Validated
Probab=96.65 E-value=1.4 Score=49.47 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=78.9
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC--cccccccc----eEEeccccccCC--C
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR--KFDVSKFG----VIIAGAQKNIGP--A 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~--pIDv~~~g----vl~asaqK~lGP--~ 333 (621)
++..+|.+-......|+..|- +++++|+++|+|=+|+ +|-. ..=.+.+| +++. -|.+|- -
T Consensus 212 ~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt~--gK~lggG~~ 289 (451)
T PRK07678 212 ETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIITM--AKGITSAYL 289 (451)
T ss_pred CceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEEe--ecccccCCc
Confidence 456666655554556777662 4568999999999984 5431 22233444 6666 488841 1
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
=+|.+.+++++.+.+.+..+. . .....++|+-.|+ +..+..++|+.+.++ + +.++.+++.++|++.|++
T Consensus 290 Pi~av~~~~~i~~~~~~~~~~----~-~~~h~~T~~gnp~-~~aaa~a~l~~l~~~-~---~~~~~~~~g~~l~~~l~~ 358 (451)
T PRK07678 290 PLSATAVKKEIYEAFKGKGEY----E-HFRHVNTFGGNPA-ACALALKNLEIMENE-N---LIERSAQLGELLLEQLKE 358 (451)
T ss_pred ceeEEEEcHHHHHHHhccCcc----c-ccccCCCCCcCHH-HHHHHHHHHHHHHhC-C---HHHHHHHHHHHHHHHHHH
Confidence 189999999998765431110 0 0112456655554 445666789998775 3 455677777777777754
No 327
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=96.63 E-value=0.06 Score=63.29 Aligned_cols=127 Identities=13% Similarity=0.184 Sum_probs=77.9
Q ss_pred eEEEEecccccccccccc--ccccCCCcE-EEecccc--cCCCcc-c----ccc---cc---eEEecccccc-CCCccEE
Q psy8733 275 SYLYYCDNETVDGVEFNY--IPDSQGIPL-VSDMSSN--FLSRKF-D----VSK---FG---VIIAGAQKNI-GPAGITV 337 (621)
Q Consensus 275 ~~V~~thnET~tGv~~p~--i~~~~g~ll-vvDavSs--~G~~pI-D----v~~---~g---vl~asaqK~l-GP~Glg~ 337 (621)
+++.+| +.|=.|+..++ |.+.-|+.+ ++|.+-. +.-.|+ . +.. -| +++-|.||.| |-+-.+.
T Consensus 299 ~~vvit-~pTYdGi~yd~~~I~~~~g~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~ 377 (713)
T PRK15399 299 VHAVIT-NSTYDGLLYNTDWIKQTLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASL 377 (713)
T ss_pred eEEEEE-CCCCCceeeCHHHHHHHhCCCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccccccchhee
Confidence 565444 55889999996 544446776 5996532 111121 1 111 13 4488999999 4888888
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCcc--CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVY--NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~--~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
+-++.++ +.....+.-.++ -+|+...++++..+..++....| +.+.++..+++..+|+.|.++.+
T Consensus 378 iHvk~~v------------d~~~~n~a~~m~~STSPsY~LmASLD~a~~~m~~~~G-~~l~~~~i~~a~~fR~~l~~~~~ 444 (713)
T PRK15399 378 IHIKGEY------------DEETFNEAFMMHTSTSPSYPIVASVETAAAMLRGNPG-KRLINRSVERALHFRKEVQRLRE 444 (713)
T ss_pred eeecCCC------------CHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhccc
Confidence 8776532 100000000111 25667777888888888875324 56778888889999999988764
No 328
>PRK09275 aspartate aminotransferase; Provisional
Probab=96.62 E-value=0.055 Score=61.79 Aligned_cols=74 Identities=18% Similarity=0.333 Sum_probs=52.8
Q ss_pred CCCCceEEEEecccccccccccc--------ccc--cCCCcEEEecccccCCC-cccc-ccc--c-eEEeccccccCCCc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPD--SQGIPLVSDMSSNFLSR-KFDV-SKF--G-VIIAGAQKNIGPAG 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~--~~g~llvvDavSs~G~~-pIDv-~~~--g-vl~asaqK~lGP~G 334 (621)
+++++++|.+++-.|+||...+. +++ .+++++|+|-+=.-... ...+ +.+ . +++.|-=|.+|.+|
T Consensus 238 ~~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG 317 (527)
T PRK09275 238 RDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATG 317 (527)
T ss_pred cCCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcH
Confidence 56789999999999999999883 332 45899999976432211 1111 111 2 77888899999888
Q ss_pred --cEEEEEchh
Q psy8733 335 --ITVVIVRED 343 (621)
Q Consensus 335 --lg~livr~~ 343 (621)
+|+++..++
T Consensus 318 ~RlG~i~~~~~ 328 (527)
T PRK09275 318 WRLGVIALHED 328 (527)
T ss_pred hHHhhhhcCch
Confidence 699998876
No 329
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=96.61 E-value=0.085 Score=59.22 Aligned_cols=126 Identities=14% Similarity=0.255 Sum_probs=78.7
Q ss_pred CceEEEE-ecccccccccccc--------ccccCCCcEEEecccccCCC---cc-ccccc---c--eEEeccccccCCC-
Q psy8733 273 EASYLYY-CDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR---KF-DVSKF---G--VIIAGAQKNIGPA- 333 (621)
Q Consensus 273 ~t~~V~~-thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~---pI-Dv~~~---g--vl~asaqK~lGP~- 333 (621)
+.|++++ ....|.||+..+. +++++++++|=|-.=+-... |. ++..+ + +.++|-=|.+.|.
T Consensus 226 ~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~Pgl 305 (459)
T COG1167 226 KPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLAPGL 305 (459)
T ss_pred CCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhccccc
Confidence 5777764 4567899999885 45689999999876554322 22 23333 3 7778889999966
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHHHHH
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGG----LAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gG----l~~i~~r~~~la~~L~e~ 409 (621)
.+|+++..+++.+++.. .+ .....+++...-.+ ...++. .|+ +..+.+..+++.+.+.+.
T Consensus 306 RlG~vv~p~~~~~~~~~-------~k-----~~~~~~~s~~~Q~~---la~~l~-~G~~~~hl~~lR~~y~~rr~~l~~~ 369 (459)
T COG1167 306 RLGYVVAPPELIEKLLR-------LK-----QAADLGPSSLSQAA---LAAFLL-SGHYDRHLRRLRREYARRRDALLEA 369 (459)
T ss_pred ceeeeeCCHHHHHHHHH-------HH-----HHhcCCCChHHHHH---HHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999998776521 11 11112222222222 233444 433 566777777777788888
Q ss_pred HHccC
Q psy8733 410 IDNSD 414 (621)
Q Consensus 410 L~~~~ 414 (621)
|.+..
T Consensus 370 L~~~~ 374 (459)
T COG1167 370 LAEYL 374 (459)
T ss_pred HHHhC
Confidence 87753
No 330
>KOG1404|consensus
Probab=96.60 E-value=0.15 Score=55.32 Aligned_cols=123 Identities=17% Similarity=0.208 Sum_probs=76.5
Q ss_pred EEEecccccccc---cccc---------ccccCCCcEEEecccccCCCcccc---cccceE--EeccccccC-CCccEEE
Q psy8733 277 LYYCDNETVDGV---EFNY---------IPDSQGIPLVSDMSSNFLSRKFDV---SKFGVI--IAGAQKNIG-PAGITVV 338 (621)
Q Consensus 277 V~~thnET~tGv---~~p~---------i~~~~g~llvvDavSs~G~~pIDv---~~~gvl--~asaqK~lG-P~Glg~l 338 (621)
|+.--.||+.|+ +.+- +++++|.++|+|=+|+-.++-=.+ +..|++ +-+--|++| -.=+|.+
T Consensus 213 vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGnG~Pl~AV 292 (442)
T KOG1404|consen 213 VAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGNGFPLGAV 292 (442)
T ss_pred eeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHHHHHhhccCCCcceee
Confidence 444445666554 4431 345799999999999865543222 222211 122348885 3448899
Q ss_pred EEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 339 IVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 339 ivr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+.++++.+.+..... ...+|+--|+....+ .++|+-++++ ++.++..+...+|.+.|.++.
T Consensus 293 vtt~EIa~v~~~~~~----------~fnTyggnP~a~avg-~aVL~Vikee----~LqE~aa~vG~yl~~~l~~l~ 353 (442)
T KOG1404|consen 293 VTTPEIADVLNQKSS----------HFNTYGGNPVACAVG-LAVLKVIKEE----NLQENAAEVGSYLLEKLAALK 353 (442)
T ss_pred ecCHHHHHHHHhccc----------cccccCCCchhHHHH-HHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHh
Confidence 999998765532111 123444445555444 4578888774 888899999999999998763
No 331
>KOG1360|consensus
Probab=96.56 E-value=0.42 Score=52.18 Aligned_cols=129 Identities=12% Similarity=0.131 Sum_probs=84.8
Q ss_pred CceEEEEecccccccccccc--c---cccCCCcEEEecccccCC----------CcccccccceEEeccccccCCCccEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY--I---PDSQGIPLVSDMSSNFLS----------RKFDVSKFGVIIAGAQKNIGPAGITV 337 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~--i---~~~~g~llvvDavSs~G~----------~pIDv~~~gvl~asaqK~lGP~Glg~ 337 (621)
-+|.|++-.+-..+|.+.|+ + ++++|++.++|-+-++|- ++==+.+.|+|...--|.+|.-| |.
T Consensus 303 vPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVG-GY 381 (570)
T KOG1360|consen 303 VPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVG-GY 381 (570)
T ss_pred CCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccccc-ce
Confidence 36888888888889999997 3 468999999999888763 12223445566666667776544 44
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccC-CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYN-TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~-TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+.-+.++++-++...| +..|. +.|...+.+.-+++++++.+.|..- ...+++..+++++.|.+.|
T Consensus 382 IAat~~LvDmiRSyAa-----------GFIFTTSLPP~vl~GAleaVr~lk~~eg~~l-R~~hqrnv~~~kq~l~~~G 447 (570)
T KOG1360|consen 382 IAATRKLVDMIRSYAA-----------GFIFTTSLPPMVLAGALEAVRILKSEEGRVL-RRQHQRNVKYVKQLLMELG 447 (570)
T ss_pred ehhhhhHHHHHHHhcC-----------ceEEecCCChHHHHhHHHHHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHcC
Confidence 4455555544433323 22232 3455567788889999986646443 4445666778888888875
No 332
>KOG1383|consensus
Probab=96.55 E-value=0.066 Score=59.17 Aligned_cols=142 Identities=19% Similarity=0.123 Sum_probs=96.7
Q ss_pred CCCCceEEEEecccccccccccc--ccc---c-CCCcEEEecccccCCCc---ccccccc-------eEEecccccc-CC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--IPD---S-QGIPLVSDMSSNFLSRK---FDVSKFG-------VIIAGAQKNI-GP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--i~~---~-~g~llvvDavSs~G~~p---IDv~~~g-------vl~asaqK~l-GP 332 (621)
++++|..|....-.+.+|..-|+ +.+ + .+++++||+++.=.-.| .+..+|| -+.+++||.- -|
T Consensus 215 i~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~ 294 (491)
T KOG1383|consen 215 IDENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAP 294 (491)
T ss_pred hccceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccccccCCCCceeEeeccceeeeee
Confidence 67899999999999999998885 332 3 89999999998755553 2233444 6899999965 69
Q ss_pred CccEEEEEchhHHhhhCCCCCce--eecccccc-----CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q psy8733 333 AGITVVIVREDLLEYALPITPTV--FHFKINAD-----NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVL 405 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~--ld~~~~~~-----~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~ 405 (621)
+|++.++=|.+-+- +.. -+ .||..-.. ++|+++ ..+++.-+++=.+-++ |-.+..+++.+.+..
T Consensus 295 ~G~~~vl~r~k~~~---~~q-~~~~~~w~Gg~y~s~TlngSR~g----~~va~~wa~~~~lG~e-GY~~~~~~ive~~~~ 365 (491)
T KOG1383|consen 295 AGSSWVLYRNKELL---PHQ-LFFHTDWLGGIYASPTLNGSRPG----SQVAAQWAALMSLGEE-GYRENTQNIVETARK 365 (491)
T ss_pred cCcEEEEEcccccc---cce-EEEeccccCccccCcccccCCcc----cHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHH
Confidence 99999888765321 100 01 13332111 234443 3444444555556566 777777889999999
Q ss_pred HHHHHHccCCcccCc
Q psy8733 406 LYQEIDNSDKFYECP 420 (621)
Q Consensus 406 L~e~L~~~~g~~~~~ 420 (621)
|+++|++++++....
T Consensus 366 l~egie~i~~i~i~g 380 (491)
T KOG1383|consen 366 LREGIENIKGIKIVG 380 (491)
T ss_pred HHHhhhccccceecC
Confidence 999999998887653
No 333
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=96.53 E-value=1.2 Score=49.77 Aligned_cols=122 Identities=18% Similarity=0.336 Sum_probs=71.7
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccCCCc--
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIGPAG-- 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lGP~G-- 334 (621)
+..+|.+-......|+..|- +++++|+++|.|=+++ ++. .++-++.++ ++ +-=|.+| +|
T Consensus 219 ~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~--t~sK~l~-~G~p 295 (451)
T PRK06918 219 TIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLI--TVSKSLG-AGVP 295 (451)
T ss_pred ceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEE--eeehhhc-CCCc
Confidence 44455443333334665542 3568999999999976 432 222233333 44 3458886 24
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.+ ....++++.. .....+..++|+++.+. + +.++.+++.+++.+.|+++
T Consensus 296 ig~v~~~~~i~~~~~~-----------~~~~~T~~g~-~l~~aaa~a~l~~i~~~-~---~~~~~~~~g~~l~~~l~~l 358 (451)
T PRK06918 296 ISGVIGRKEIMDESAP-----------GELGGTYAGS-PLGCAAALAVLDIIEKE-N---LNDRAIELGKVVMNRFEEM 358 (451)
T ss_pred cEEEEEcHHHHhccCC-----------CCcCcCCCcC-HHHHHHHHHHHHHHHHC-C---HHHHHHHHHHHHHHHHHHH
Confidence 6889999888765421 1123455433 34456666788988764 3 3445566667777777664
No 334
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=96.40 E-value=0.0062 Score=66.99 Aligned_cols=159 Identities=16% Similarity=0.211 Sum_probs=114.8
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCC--c-----eee---eeecccCCCccCCCchhHHHHHHHHHHHHHh
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITP--T-----VFH---FKINADNNSVYNTPPTFVVHVIQRVFAWIKR 518 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p--~-----~~~---y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~ 518 (621)
.|++.+|.+|-+||.|+++++++++++++..+..- . ..+ |........ ..|||+..++-+...++|+.+
T Consensus 226 ~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e-~GT~~~~~~~~l~~al~~~~~ 304 (424)
T PLN02855 226 ADFLVASSHKMCGPTGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFE-AGTPAIGEAIGLGAAIDYLSE 304 (424)
T ss_pred CCEEEeecccccCCCccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhcc-CCChHHHHHHHHHHHHHHHHH
Confidence 47788999998899999999999999877543210 0 001 111111122 468999999999999999987
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhccCCc--ccccC----CCC-------Cc-ccHHHHHHHHHc-cCccccCC-------
Q psy8733 519 QGGLAKMEQNSLQKSVLLYQEIDNSDKF--YECPV----QAG-------FP-LDELFLKEAKAH-NMIQLKGH------- 576 (621)
Q Consensus 519 ~gg~~~~~~~~~~ka~~lY~~id~~~~~--~~~~v----~~~-------~~-~~~~~~~~~~~~-~i~~~~g~------- 576 (621)
. |++.++++..+-++.+++.+++-+++ |.... ... .. -..++.+.+.++ ||....|.
T Consensus 305 ~-g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~~~~~v~~~L~~~~gI~v~~g~~c~~~~~ 383 (424)
T PLN02855 305 I-GMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFLDQQHGVAIRSGHHCAQPLH 383 (424)
T ss_pred h-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCcCHHHHHHHhcccCCEEEechhhhhHHHH
Confidence 7 69999999999999999999776542 21111 000 01 124577788777 99877665
Q ss_pred ---CCCCccceeeccCCCHHHHHHHHHHHHHHHHHc
Q psy8733 577 ---RLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609 (621)
Q Consensus 577 ---~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~ 609 (621)
+..+.||+|.-.-.|.||++.|++.|++..++.
T Consensus 384 ~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~ 419 (424)
T PLN02855 384 RYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFF 419 (424)
T ss_pred HHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHH
Confidence 223569999999999999999999999987663
No 335
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=96.40 E-value=1.6 Score=48.63 Aligned_cols=123 Identities=15% Similarity=0.185 Sum_probs=75.1
Q ss_pred CCceEEEEeccccccccccc-c--------ccccCCCcEEEecccccCCCcc---cccccc----eEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFN-Y--------IPDSQGIPLVSDMSSNFLSRKF---DVSKFG----VIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p-~--------i~~~~g~llvvDavSs~G~~pI---Dv~~~g----vl~asaqK~lGP~G- 334 (621)
++.++|.+-.+-..+|+..+ . +++++|+++|+|=+++-..+.= -.+.+| ++.. =|.+|+ |
T Consensus 197 ~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tl--sK~l~~-G~ 273 (425)
T PRK07495 197 QRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTTM--AKGLAG-GF 273 (425)
T ss_pred CceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCEEee--hhhhcC-Cc
Confidence 35667766555555675543 1 4568999999999976222221 123333 4444 588852 3
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.+..++++.+.+.+ . ...++++.+|+ ...+..++++++.+. .+.++.+++.++|++.|+++
T Consensus 274 pigav~~~~~i~~~~~~---~--------~~~~T~~~~pl-~~aaa~a~l~~l~~~----~l~~~~~~~g~~l~~~L~~l 337 (425)
T PRK07495 274 PLAAVTGRAEIMDAPGP---G--------GLGGTYGGNPL-GIAAAHAVLDVIEEE----DLCERANQLGNRLKQRLASL 337 (425)
T ss_pred cceEEEEcHHHHhccCC---C--------CcCCCCCCCHH-HHHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHHHHH
Confidence 7888899888764421 0 12345544444 456666889999764 45566677777787777764
No 336
>PRK07480 putative aminotransferase; Validated
Probab=96.37 E-value=1.8 Score=48.73 Aligned_cols=126 Identities=15% Similarity=0.132 Sum_probs=74.3
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccC--C-C
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIG--P-A 333 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lG--P-~ 333 (621)
++.+|.+-...-..|+..|- +++++|+++|+|=+|+ +|- ..+-.+.+| ++++ =|.+| - |
T Consensus 219 ~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~gG~~P 296 (456)
T PRK07480 219 NVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTI--AKGLTSGYIP 296 (456)
T ss_pred cEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeeee--ehhhccCCcc
Confidence 45555554444445676652 4578999999999985 542 112223344 5555 48884 1 2
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHH-HHHHHHHHHHHHc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNS-LQKSVLLYQEIDN 412 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~-~~la~~L~e~L~~ 412 (621)
+|.++.++++.+..... +.. ....++|+.. ..+..+..++|+.+.+. + +.++. +++.++|++.|++
T Consensus 297 -i~av~~~~~i~~~~~~~-~~~------~~~~~T~~gn-pl~~Aaa~a~L~~l~~~-~---l~~~~~~~~g~~l~~~l~~ 363 (456)
T PRK07480 297 -MGAVGVGDRVAEVLIEE-GGE------FNHGFTYSGH-PVAAAVALANLRILRDE-G---IVERVRDDTGPYLQKRLRE 363 (456)
T ss_pred -ceEEEEcHHHHHHHhcC-CCC------cccCCCCCcC-HHHHHHHHHHHHHHHhC-C---HHHHHHHHHHHHHHHHHHH
Confidence 78888899987654210 100 1124555433 34556677889999876 4 34455 3566777777765
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
+
T Consensus 364 l 364 (456)
T PRK07480 364 L 364 (456)
T ss_pred h
Confidence 3
No 337
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=96.34 E-value=0.075 Score=57.16 Aligned_cols=124 Identities=16% Similarity=0.240 Sum_probs=77.9
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cC--CCcccccccc----eEEeccccccC-CCc
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FL--SRKFDVSKFG----VIIAGAQKNIG-PAG 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G--~~pIDv~~~g----vl~asaqK~lG-P~G 334 (621)
++..+|.+-..-...|...+- +++++|+++|+|=+|+ +| +..+-.+.+| +++.| |.|+ --=
T Consensus 176 ~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~g--K~l~gG~p 253 (339)
T PF00202_consen 176 DEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTFG--KGLGGGLP 253 (339)
T ss_dssp GGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEEE--GGGGTTSS
T ss_pred CcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCcccccc--cchhhhhh
Confidence 455666665555555666542 4568999999999998 43 2334334444 77776 9992 244
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
++.++.++++.+...+. ...++++--| .+..+..++|+.+.+. + +.++.+++..++.+.|.++
T Consensus 254 ~sav~~~~~i~~~~~~~-----------~~~~T~~g~p-~~~aaa~~~l~~~~~~-~---~~~~~~~~g~~l~~~L~~l 316 (339)
T PF00202_consen 254 ISAVLGSEEIMEAFQPG-----------SHGSTFGGNP-LSCAAALATLEILEEE-D---LLERVRELGERLREGLREL 316 (339)
T ss_dssp EEEEEEEHHHHTTSCTT-----------SSTCTTTT-H-HHHHHHHHHHHHHHHT-T---HHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhcccccc-----------ccccccccch-HhhhhhhhHHHhhccH-H---HHHHHHHHHHHHHHHHHHH
Confidence 88999999987654221 1345555333 3566777889999886 3 4455566666666666654
No 338
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=96.31 E-value=1.5 Score=49.32 Aligned_cols=122 Identities=19% Similarity=0.239 Sum_probs=74.4
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCCccc---cccc----ceEEeccccccC-CC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSRKFD---VSKF----GVIIAGAQKNIG-PA 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~pID---v~~~----gvl~asaqK~lG-P~ 333 (621)
.++.+|.+-......|+..|- +++++|+++|+|=+++ +| +.=. .+.+ |+++. -|.+| --
T Consensus 221 ~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~G-rtG~~~a~~~~gv~PDiv~~--gK~l~gG~ 297 (457)
T PRK05639 221 DEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIG-RTGKWFASEWFEVKPDLIIF--GKGVASGM 297 (457)
T ss_pred CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccC-cCchHHHHHhcCCCCCEEEe--chhhcCCC
Confidence 456666655444455666652 4568999999999987 32 1111 1222 46665 58884 34
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
++|.++.++++.+. .. .. ..++++-.|+ ...+..++|+.+.+. .+.++.+++.++|++.|+++
T Consensus 298 pi~av~~~~~i~~~-~~--~~---------~~~T~~g~p~-~~aaa~a~l~~l~~~----~l~~~~~~~g~~l~~~L~~l 360 (457)
T PRK05639 298 GLSGVIGRKELMDL-TS--GS---------ALLTPAANPV-ISAAAEATLEIIEEE----NLLKNALKVGEFIKKRLLEM 360 (457)
T ss_pred cceeEEehHHHHhh-cC--CC---------cccCCCcCHH-HHHHHHHHHHHHHHc----cHHHHHHHHHHHHHHHHHHH
Confidence 48999999998762 11 00 1234443333 456666789988775 34556666788888888764
No 339
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=96.30 E-value=0.062 Score=63.19 Aligned_cols=123 Identities=15% Similarity=0.194 Sum_probs=73.1
Q ss_pred EEEEecccccccccccc--cc---ccCCCcEEEecccccCCC---c-cc-cccc-------c--eEEeccccccC-CCcc
Q psy8733 276 YLYYCDNETVDGVEFNY--IP---DSQGIPLVSDMSSNFLSR---K-FD-VSKF-------G--VIIAGAQKNIG-PAGI 335 (621)
Q Consensus 276 ~V~~thnET~tGv~~p~--i~---~~~g~llvvDavSs~G~~---p-ID-v~~~-------g--vl~asaqK~lG-P~Gl 335 (621)
++ +..+.|=.|+..++ |. +.++ +++|.+-. ++. | +. .+.. + +++-|.||.|+ -+-.
T Consensus 300 ~~-vit~pTYdG~~yd~~~I~~~~~~~~--ilvDEAwg-ah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~alTQa 375 (714)
T PRK15400 300 HA-VITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWV-PYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQA 375 (714)
T ss_pred EE-EEECCCCccEecCHHHHHHHhCCCC--EEEEccch-hhhccCcccCCcChhhcCCCCCCceEEEEchhhcccchhHH
Confidence 54 44456889999996 32 3444 67885422 111 1 10 1111 3 88889999994 6655
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCcc--CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVY--NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~--~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+.+-++..+ +.....+.-.++ -+|+...++++..+..++....| +.+.++..+++..+|+.|.++
T Consensus 376 S~LHvkg~v------------d~~~~n~a~~m~~STSPsY~l~ASLD~a~~~m~~~~G-~~l~~~~i~~a~~~R~~l~~~ 442 (714)
T PRK15400 376 SMIHVKGDV------------NEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRL 442 (714)
T ss_pred hHHHHcCCC------------CHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhC
Confidence 555443321 100000000111 25667777888888888875324 667788888999999999888
Q ss_pred CC
Q psy8733 414 DK 415 (621)
Q Consensus 414 ~g 415 (621)
++
T Consensus 443 ~~ 444 (714)
T PRK15400 443 RT 444 (714)
T ss_pred CC
Confidence 75
No 340
>PRK06062 hypothetical protein; Provisional
Probab=96.30 E-value=1.6 Score=48.94 Aligned_cols=125 Identities=15% Similarity=0.207 Sum_probs=74.8
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccccCCCccc---ccccc----eEEeccccccCC--Cc
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSRKFD---VSKFG----VIIAGAQKNIGP--AG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~~pID---v~~~g----vl~asaqK~lGP--~G 334 (621)
+..+|.+-..-...|+..|- +++++|+++|+|=+++-..+.=. .+.+| ++++ -|.+|- -=
T Consensus 214 ~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t~--gK~lggG~~P 291 (451)
T PRK06062 214 TIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLITF--AKGVNSGYVP 291 (451)
T ss_pred ceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCCeeee--chhhhcCCcC
Confidence 45555554444445666661 45789999999999883322211 12233 5555 488841 11
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH-HHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKS-VLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la-~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.. .+ ....++|+..| .+..+..++|+.+.++ + +.++.+++. ++|++.|+++
T Consensus 292 igav~~~~~i~~~~~~-~~--------~~~~~T~~gnp-l~~Aaa~a~L~~l~~~-~---l~~~~~~~G~~~l~~~L~~l 357 (451)
T PRK06062 292 LGGVAISEAIAATFAD-RP--------YPGGLTYSGHP-LACAAAVATINAMEEE-G---IVENAARIGAEVLGPGLREL 357 (451)
T ss_pred cEEEEEcHHHHHHhcc-CC--------CCCCCCCCCCH-HHHHHHHHHHHHHHhc-C---HHHHHHHHHHHHHHHHHHHH
Confidence 7888899988765421 00 11235665544 4556667789999776 3 556666666 4777777664
No 341
>PLN02651 cysteine desulfurase
Probab=96.28 E-value=0.011 Score=63.52 Aligned_cols=140 Identities=15% Similarity=0.090 Sum_probs=96.1
Q ss_pred hhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHH
Q psy8733 447 FFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKME 526 (621)
Q Consensus 447 ~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~ 526 (621)
...|++.+|+||-+||.|++++++|++++++..+ .+..+. ....-...|||+..|+-+...|+++.+ + .+.++
T Consensus 189 ~~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~l~p---~~~g~~--~~~~~~~GT~~~~~~~~l~~al~~~~~-~-~~~i~ 261 (364)
T PLN02651 189 LGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEP---LMSGGG--QERGRRSGTENTPLVVGLGAACELAMK-E-MDYDE 261 (364)
T ss_pred CCCCEEEechhhhCCCCceEEEEEcCCCCCCCCc---cccCCC--ccCCccCCCccHHHHHHHHHHHHHHHH-h-HHHHH
Confidence 3468899999997779999999999998865433 222111 111224679999999999999999986 3 49999
Q ss_pred HHHHHHHHHHHHHHhc-cCCc--ccccCCCC----------Cc-c-cHHHHHHHHHccCccccCCC--------------
Q psy8733 527 QNSLQKSVLLYQEIDN-SDKF--YECPVQAG----------FP-L-DELFLKEAKAHNMIQLKGHR-------------- 577 (621)
Q Consensus 527 ~~~~~ka~~lY~~id~-~~~~--~~~~v~~~----------~~-~-~~~~~~~~~~~~i~~~~g~~-------------- 577 (621)
++.++-++.+++.+.+ -+++ |.+ .++. .+ . .+++.+.+++ |....|+.
T Consensus 262 ~~~~~l~~~l~~~l~~~~~~~~i~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~ 338 (364)
T PLN02651 262 KHMKALRERLLNGLRAKLGGVRVNGP-RDPEKRYPGTLNLSFAYVEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRA 338 (364)
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEECC-CCcccCcCCEEEEEeCCCCHHHHHHHhCC--EEEEchhhcCCCCCCcCHHHHH
Confidence 9999999999999875 3332 221 1110 01 1 2345666643 66655541
Q ss_pred -------CCCccceeeccCCCHHHHH
Q psy8733 578 -------LVGGIRASIYNAITVDEAV 596 (621)
Q Consensus 578 -------~~~~~r~~~~~a~~~~~~~ 596 (621)
..|.+|+|.=+-.|.||++
T Consensus 339 ~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 339 LGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred cCCChHHhCceEEEEcCCCCCHHHcC
Confidence 1367999999999988863
No 342
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.013 Score=64.84 Aligned_cols=161 Identities=18% Similarity=0.205 Sum_probs=123.9
Q ss_pred hhhHHHHHhhccc-ccccCCcEEeeecHhHhhhcCCCC--Cceeeeeeccc--------CCCccCCCchhHHHHHHHHHH
Q psy8733 446 AFFFGVIIAGAQK-NIGPAGITVVIVREDLLEYALPIT--PTVFHFKINAD--------NNSVYNTPPTFVVHVIQRVFA 514 (621)
Q Consensus 446 ~~~~~~~~a~~qk-~~GpaGl~v~iv~~~~l~~~~~~~--p~~~~y~~~~~--------~~s~~nTP~~~~iy~~~~vl~ 514 (621)
+...|.+.+|+=| -+||.|++|..+|+++++.-.|.. ..+.++...-. -.----|||+.+++-++..++
T Consensus 212 ~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~ 291 (405)
T COG0520 212 ELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALD 291 (405)
T ss_pred hcCCCEEEEcccccccCCCceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHH
Confidence 4568999999999 778999999999999998864431 22222222100 011235999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHhccCC--cccccC-CCC------Cc--ccHHHHHHHHHccCccccCCCC-----
Q psy8733 515 WIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK--FYECPV-QAG------FP--LDELFLKEAKAHNMIQLKGHRL----- 578 (621)
Q Consensus 515 ~~~~~gg~~~~~~~~~~ka~~lY~~id~~~~--~~~~~v-~~~------~~--~~~~~~~~~~~~~i~~~~g~~~----- 578 (621)
|+++.| .+++++..++-++.+++-+.+-++ +|.++- +.. .+ -..++.+.+.++||..-.||.-
T Consensus 292 ~~~~ig-~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~~~dv~~~L~~~gI~vr~g~~ca~p~~ 370 (405)
T COG0520 292 YLLEIG-MEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIAVRAGHHCAQPLH 370 (405)
T ss_pred HHHHHh-HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCCCHHHHHHHHHhCCeEEEeccccccHHH
Confidence 999888 999999999999999999998773 344443 111 11 3466889999999888888644
Q ss_pred -----CCccceeeccCCCHHHHHHHHHHHHHHHH
Q psy8733 579 -----VGGIRASIYNAITVDEAVILVKFMKEFRH 607 (621)
Q Consensus 579 -----~~~~r~~~~~a~~~~~~~~l~~~~~~~~~ 607 (621)
.+++|+|...=.|.||+++|++.|+++.+
T Consensus 371 ~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 371 RLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred HhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 45599999999999999999999998865
No 343
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=96.17 E-value=0.014 Score=62.68 Aligned_cols=151 Identities=16% Similarity=0.151 Sum_probs=108.0
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCc-----e-----eeeeecccCCCccCCCchhHHHHHHHHHHHHHh
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPT-----V-----FHFKINADNNSVYNTPPTFVVHVIQRVFAWIKR 518 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~-----~-----~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~ 518 (621)
.|++.+|.+|.+|+.|+++++++++++++..+.... . ..|....... .-.|||+..++-+...++|+++
T Consensus 192 ~d~~~~s~~K~~~~~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~~al~~al~~l~~ 270 (373)
T cd06453 192 CDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKF-EAGTPNIAGAIGLGAAIDYLEK 270 (373)
T ss_pred CCEEEeccccccCCCCcEEEEEchHHhhcCCCeecCCCccccccccccccCCCcccc-CCCCCCHHHHHHHHHHHHHHHH
Confidence 466778999999999999999999998775442110 0 0011100011 1248999999999999999987
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhccCCccccc--CC-CC-------Cc-ccHHHHHHHHHccCccccCCC----------
Q psy8733 519 QGGLAKMEQNSLQKSVLLYQEIDNSDKFYECP--VQ-AG-------FP-LDELFLKEAKAHNMIQLKGHR---------- 577 (621)
Q Consensus 519 ~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~--v~-~~-------~~-~~~~~~~~~~~~~i~~~~g~~---------- 577 (621)
. |++++.++.++.++.+++.+++.++ +... .. .. .. ...++.+.++++||....|+.
T Consensus 271 ~-g~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~ 348 (373)
T cd06453 271 I-GMEAIAAHEHELTAYALERLSEIPG-VRVYGDAEDRAGVVSFNLEGIHPHDVATILDQYGIAVRAGHHCAQPLMRRLG 348 (373)
T ss_pred c-CHHHHHHHHHHHHHHHHHHHhcCCC-eEEeCCccccCCeEEEEECCcCHHHHHHHHHHCCEEeccCccchhHHHHHhC
Confidence 6 5899999999999999999988764 2211 11 00 01 225688899999998766552
Q ss_pred CCCccceeeccCCCHHHHHHHHHHH
Q psy8733 578 LVGGIRASIYNAITVDEAVILVKFM 602 (621)
Q Consensus 578 ~~~~~r~~~~~a~~~~~~~~l~~~~ 602 (621)
..+.||+|.=.-+|.||+++|++.|
T Consensus 349 ~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 349 VPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred CCCeEEEEecCCCCHHHHHHHHhhC
Confidence 2467999999999999999998864
No 344
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=96.13 E-value=0.01 Score=64.75 Aligned_cols=159 Identities=16% Similarity=0.112 Sum_probs=112.3
Q ss_pred hhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCC--ceee---------eeecccCCCccCCCchhHHHHHHHHHHH
Q psy8733 447 FFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITP--TVFH---------FKINADNNSVYNTPPTFVVHVIQRVFAW 515 (621)
Q Consensus 447 ~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p--~~~~---------y~~~~~~~s~~nTP~~~~iy~~~~vl~~ 515 (621)
...|++.+|.+|-+||.|++++++++++++...+..- ...+ |+..+... -..|||+.+|+-+...+++
T Consensus 215 ~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~-e~GT~~~~~~~~l~~al~~ 293 (406)
T PRK09295 215 LDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRF-EAGTPNTGGIIGLGAALDY 293 (406)
T ss_pred cCCCEEEeehhhccCCCCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhc-CCCCccHHHHHHHHHHHHH
Confidence 3467888999998899999999999999876432110 0100 00000111 1349999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHhccCCccc-ccCCCC--------CcccHHHHHHHHHccCccccCC----------
Q psy8733 516 IKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE-CPVQAG--------FPLDELFLKEAKAHNMIQLKGH---------- 576 (621)
Q Consensus 516 ~~~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~-~~v~~~--------~~~~~~~~~~~~~~~i~~~~g~---------- 576 (621)
+.+.| ++.++++.++-++.+++.+.+-+++-- .+.... .....++.+.+.++||+...|.
T Consensus 294 ~~~~g-~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~ 372 (406)
T PRK09295 294 VSALG-LNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYY 372 (406)
T ss_pred HHHhC-HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEECCcCHHHHHHHHHhCCeEEeccccchHHHHHHH
Confidence 98764 899999999999999999877654211 011110 0122457778899999876553
Q ss_pred CCCCccceeeccCCCHHHHHHHHHHHHHHHH
Q psy8733 577 RLVGGIRASIYNAITVDEAVILVKFMKEFRH 607 (621)
Q Consensus 577 ~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~ 607 (621)
+..|.+|+|.-.-.|.||+++|++.|++..+
T Consensus 373 ~~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 373 NVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred CCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 2235699999999999999999999998743
No 345
>KOG1359|consensus
Probab=96.09 E-value=0.48 Score=49.93 Aligned_cols=119 Identities=16% Similarity=0.193 Sum_probs=67.7
Q ss_pred ccccccccc-----ccccCCCcEEEecccccCC---------Ccccc-cccceEEeccccccC-CCccEEEEEchhHHhh
Q psy8733 284 TVDGVEFNY-----IPDSQGIPLVSDMSSNFLS---------RKFDV-SKFGVIIAGAQKNIG-PAGITVVIVREDLLEY 347 (621)
Q Consensus 284 T~tGv~~p~-----i~~~~g~llvvDavSs~G~---------~pIDv-~~~gvl~asaqK~lG-P~Glg~livr~~ll~~ 347 (621)
...|-..|+ +++++|+++++|-+.+-|- +.+.+ .+.|++...--|.+| ..| |+....+.+..-
T Consensus 204 SMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~G-Gyttgp~~li~l 282 (417)
T KOG1359|consen 204 SMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASG-GYTTGPKPLISL 282 (417)
T ss_pred ccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCC-CCccCChhHHHH
Confidence 344556664 4568999999997765431 12222 234477777788886 443 555555555443
Q ss_pred hCCCCCceeeccccccCCCcc-CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 348 ALPITPTVFHFKINADNNSVY-NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 348 ~~~~~P~~ld~~~~~~~~s~~-~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
++.... +..| |+.|...+-...++++.+..- .....+.+...+++++..+..+ |.+
T Consensus 283 lrqr~R-----------pylFSnslppavV~~a~ka~dllm~s---~~~i~~~~a~~qrfr~~me~aG-ftI 339 (417)
T KOG1359|consen 283 LRQRSR-----------PYLFSNSLPPAVVGMAAKAYDLLMVS---SKEIQSRQANTQRFREFMEAAG-FTI 339 (417)
T ss_pred HHhcCC-----------ceeecCCCChhhhhhhHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHhcC-cee
Confidence 322111 1112 444544455556778877653 3444556667788888887764 543
No 346
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=95.83 E-value=0.015 Score=62.04 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=72.0
Q ss_pred hHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 448 FFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 448 ~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
..|++.+|.||-+||.|++++++++++++... .-|.+... . ........|||+..|+-+...|+.+.+ |++.+.+
T Consensus 190 ~~D~~~~s~~K~~gp~g~g~l~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~ 264 (353)
T TIGR03235 190 RIDLISCSGHKIYGPKGIGALVIRKRGKPKAP-LKPIMFGG-G-QERGLRPGTLPVHLIVGMGEAAEIARR--NAQAWEV 264 (353)
T ss_pred CCCEEEeehhhcCCCCceEEEEEccCcccccc-cCceeeCC-C-CcCccccCCCChHHHHHHHHHHHHHHh--hHHHHHH
Confidence 46888899999999999999999999765431 23433321 1 123345679999999999999998764 7999999
Q ss_pred HHHHHHHHHHHHHhccCCc
Q psy8733 528 NSLQKSVLLYQEIDNSDKF 546 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~~~ 546 (621)
+.++.++.+++.+.+ .++
T Consensus 265 ~~~~l~~~l~~~l~~-~g~ 282 (353)
T TIGR03235 265 KLRAMRNQLRDALQT-LGV 282 (353)
T ss_pred HHHHHHHHHHHHhcc-CCe
Confidence 999999999999976 543
No 347
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=95.82 E-value=0.02 Score=62.14 Aligned_cols=159 Identities=19% Similarity=0.207 Sum_probs=112.2
Q ss_pred hHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCC--ceee--------eeecccCCCccCCCchhHHHHHHHHHHHHH
Q psy8733 448 FFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITP--TVFH--------FKINADNNSVYNTPPTFVVHVIQRVFAWIK 517 (621)
Q Consensus 448 ~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p--~~~~--------y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~ 517 (621)
..|++.+|.+|-+||.|++++++++++++...+... .+.+ |...+... -..|||+..++.+...++++.
T Consensus 211 ~~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~al~~al~~~~ 289 (403)
T TIGR01979 211 DCDFYVFSGHKMYGPTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKF-EAGTPNIAGVIGLGAAIDYLE 289 (403)
T ss_pred CCCEEEEecccccCCCCceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhc-CCCCccHHHHHHHHHHHHHHH
Confidence 357788899999999999999999998876433210 0000 10001111 135999999999999999997
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHhccCCccc-ccCCC---C--------CcccHHHHHHHHHccCccccCC---------
Q psy8733 518 RQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE-CPVQA---G--------FPLDELFLKEAKAHNMIQLKGH--------- 576 (621)
Q Consensus 518 ~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~-~~v~~---~--------~~~~~~~~~~~~~~~i~~~~g~--------- 576 (621)
+. |.+.+.++..+.++.+++.+++.+++=. .|.++ . .....++.+.++++||....|.
T Consensus 290 ~~-g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~ 368 (403)
T TIGR01979 290 AI-GLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGVHPHDVGTILDEEGIAVRSGHHCAQPLMRR 368 (403)
T ss_pred Hh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCCcCHHHHHHHHhhCCEEEcchhhhhHHHHHH
Confidence 66 5899999999999999999987654311 11111 0 0123467888999999876542
Q ss_pred -CCCCccceeeccCCCHHHHHHHHHHHHHHHHH
Q psy8733 577 -RLVGGIRASIYNAITVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 577 -~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~ 608 (621)
+..|.+|+|.=.-.+.+|++.|++.|++..+.
T Consensus 369 ~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~ 401 (403)
T TIGR01979 369 FGVPATCRASFYIYNTEEDIDALVEALKKVRKF 401 (403)
T ss_pred hCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 33567999987677999999999999987654
No 348
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=95.60 E-value=1.1 Score=49.78 Aligned_cols=124 Identities=15% Similarity=0.130 Sum_probs=75.3
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEecccccCCCccc---cccc----ceEEeccccccC--CCc
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSNFLSRKFD---VSKF----GVIIAGAQKNIG--PAG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs~G~~pID---v~~~----gvl~asaqK~lG--P~G 334 (621)
+..+|.+-......|++.| + +++++|+++|+|=+++-. +--. .+.+ |+++. =|.+| -|
T Consensus 200 ~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv~PDivt~--gK~lggG~P- 275 (428)
T PRK12389 200 EVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGVEPDLTAL--GKIIGGGLP- 275 (428)
T ss_pred cEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCCCCCeeee--chhhcCCCc-
Confidence 4555655555555677766 1 456899999999998743 2111 1122 35444 48873 22
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.+..++++.+.+.+..+. ...++++-.|+ ...+..++|+.+.++ + +.++.+++.++|++.|.++
T Consensus 276 i~av~~~~~i~~~~~~~~~~--------~~~~T~~gnpl-~~Aaala~L~~l~~~-~---l~~~~~~~g~~l~~~L~~l 341 (428)
T PRK12389 276 IGAYGGRKDIMEQVAPLGPA--------YQAGTMAGNPA-SMAAGIACLEVLQQE-G---VYEKLDRLGAMLEEGILEA 341 (428)
T ss_pred eeEEeEHHHHHhhhccCCCc--------ccccCCccCHH-HHHHHHHHHHHHhcc-c---HHHHHHHHHHHHHHHHHHH
Confidence 67788999988765321111 12345543334 466667789988765 3 5667777888888888764
No 349
>PRK07481 hypothetical protein; Provisional
Probab=95.53 E-value=1.2 Score=50.00 Aligned_cols=130 Identities=14% Similarity=0.169 Sum_probs=78.5
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC--cccccccc----eEEeccccccC---C
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR--KFDVSKFG----VIIAGAQKNIG---P 332 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~--pIDv~~~g----vl~asaqK~lG---P 332 (621)
+++.+|.+-......|+..|- +++++|+++|+|=+|+ +|-. ..-.+.+| +++.| |.+| -
T Consensus 212 ~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~ 289 (449)
T PRK07481 212 DTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCLA--KGITSGYV 289 (449)
T ss_pred CcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEEe--ecccCCCc
Confidence 356666665555556776652 4568999999999987 4321 11123333 66664 8883 1
Q ss_pred CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 333 AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
| +|.+..++++.+...+.... .......++++--|+ ...+..++|+.+.+. ++.++.+++.++|++.|.+
T Consensus 290 P-i~av~~~~~i~~~~~~~~~~----~~~~~h~~T~~gnpl-~~aaa~a~L~~l~~~----~l~~~~~~~g~~l~~~L~~ 359 (449)
T PRK07481 290 P-LGATMVNARIADAFEANADF----GGAIMHGYTYSGHPV-ACAAALATLDIVVRE----DLPANAAKRGAYLLEGLQP 359 (449)
T ss_pred C-ceEEEEcHHHHHHHhccCcc----ccccccCCCCCCCHH-HHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHH
Confidence 3 78899999987765321100 000113455644334 456666788988765 4566677778888888876
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
+
T Consensus 360 l 360 (449)
T PRK07481 360 L 360 (449)
T ss_pred H
Confidence 4
No 350
>PRK06105 aminotransferase; Provisional
Probab=95.46 E-value=1.5 Score=49.37 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=75.8
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC--cccccccc----eEEeccccccCC--Cc
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR--KFDVSKFG----VIIAGAQKNIGP--AG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~--pIDv~~~g----vl~asaqK~lGP--~G 334 (621)
+..+|.+=......|+..+- +++++|+++|+|=+|+ +|-. -+-.+.+| +++.| |.+|- --
T Consensus 218 ~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~~g--K~lggG~~P 295 (460)
T PRK06105 218 TIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILVMS--KQLSSSYQP 295 (460)
T ss_pred ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCeeeee--cccccCccc
Confidence 44555544444444666551 4568999999999984 6531 11122233 56554 88841 12
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.+..+.. ......++++-.|+. ..+..++|+.+.++ ++.++.+++.++|++.|.++
T Consensus 296 ~~av~~~~~i~~~~~~~~~~~----~~~~h~~T~~gnpl~-~aaa~a~L~~i~~~----~l~~~v~~~g~~l~~~L~~l 365 (460)
T PRK06105 296 LSAVLMNEKVYDPIADESGKI----GTFGHGFTASGHPVA-AAVALENLAIIEER----DLVGNAAERGARLQARLRAL 365 (460)
T ss_pred ceEEEEcHHHHHHHhcccccC----cccccCCCCCCCHHH-HHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHh
Confidence 788888999876553211100 001123455544444 44455689999875 45667777888888888764
No 351
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=95.42 E-value=1.2 Score=50.16 Aligned_cols=130 Identities=12% Similarity=0.118 Sum_probs=78.4
Q ss_pred CCceEEEEec-ccccccccccc---------ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccC--C
Q psy8733 272 PEASYLYYCD-NETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIG--P 332 (621)
Q Consensus 272 ~~t~~V~~th-nET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lG--P 332 (621)
++..+|.+-. .....|+..+- +++++|+++|+|=+|+ +|- .-+-.+.+| +++.| |.+| -
T Consensus 213 ~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~ 290 (466)
T PRK07030 213 DEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCLS--KALTGGY 290 (466)
T ss_pred CceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCCCEEeee--hhccCCc
Confidence 3455555544 23445776652 4568999999999976 542 111223333 66663 8883 2
Q ss_pred -CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 333 -AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 333 -~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|.+..++++.+......+. .......++|+- |..+..+..++|+.+.++ + +.++.+++.++|++.|+
T Consensus 291 ~P-i~av~~~~ei~~~~~~~~~~----~~~~~h~~T~~g-npla~aaa~a~L~~i~~~-~---l~~~~~~~G~~l~~~L~ 360 (466)
T PRK07030 291 LP-LAAVLTTDTVYQAFYDDYPT----LRAFLHSHSYTG-NPLACAAALATLDIFEQD-N---VIENNRALARRMAEATA 360 (466)
T ss_pred cc-ceEEEecHHHHHHHhccccc----ccccccCCCCCC-CHHHHHHHHHHHHHHHhc-C---HHHHHHHHHHHHHHHHH
Confidence 3 88899999987655321110 000012355543 334466667789999876 3 55677788888888887
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
++
T Consensus 361 ~l 362 (466)
T PRK07030 361 HL 362 (466)
T ss_pred HH
Confidence 65
No 352
>KOG1357|consensus
Probab=95.41 E-value=0.55 Score=52.02 Aligned_cols=114 Identities=15% Similarity=0.202 Sum_probs=71.7
Q ss_pred cccCCCcEEEecccccCCCc-----------ccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccc
Q psy8733 294 PDSQGIPLVSDMSSNFLSRK-----------FDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINA 362 (621)
Q Consensus 294 ~~~~g~llvvDavSs~G~~p-----------IDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~ 362 (621)
.+++.+.+++|...|+|+++ +|-.+.|++.+..-|.+|-.| |.+.-++++.+.+....+.-. |
T Consensus 302 kkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~G-Gyiagsk~lid~lrt~s~~~~-y---- 375 (519)
T KOG1357|consen 302 KKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAAG-GYIAGSKELIDYLRTPSPSAL-Y---- 375 (519)
T ss_pred hccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhccccc-ceecCcHHHHhhhccCCCcee-e----
Confidence 35788999999999999872 344555688888889888666 677778888765543222110 0
Q ss_pred cCCCccCCchHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 363 DNNSVYNTPPTFVVHVIQRVFAWIKRQ---GGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 363 ~~~s~~~TP~v~~I~aL~~aL~~i~~~---gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
...-.||+. --.-.+++.+..+ ++-+...++..+.+.+++..+...+ |...
T Consensus 376 ---at~~sppva--qq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~g-fivy 429 (519)
T KOG1357|consen 376 ---ATSLSPPVA--QQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMG-FIVY 429 (519)
T ss_pred ---cccCChHHH--HHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCc-EEEe
Confidence 111123332 2233456666532 1246667777888888888888764 5544
No 353
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=95.39 E-value=0.021 Score=60.80 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=114.5
Q ss_pred hHHHHHhhcccccc-cCCcEEeeecHhHhhhcCC---CCCceeeeeec---ccC-CCccCCCchhHHHHHHHHHHHHHhc
Q psy8733 448 FFGVIIAGAQKNIG-PAGITVVIVREDLLEYALP---ITPTVFHFKIN---ADN-NSVYNTPPTFVVHVIQRVFAWIKRQ 519 (621)
Q Consensus 448 ~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~---~~p~~~~y~~~---~~~-~s~~nTP~~~~iy~~~~vl~~~~~~ 519 (621)
..|+++.|.+|.+| |.|++++++++++++...+ ..+..++.... ... ...-+|||...++.+...++|+.+
T Consensus 176 ~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~- 254 (356)
T cd06451 176 GVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILE- 254 (356)
T ss_pred CccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHH-
Confidence 46888899999998 8899999999999876542 11211111110 111 256789999999999999999886
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccCCcccccCCC------------CCc-ccHHHHHHHHHc-cCccccCCCC--CCccc
Q psy8733 520 GGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQA------------GFP-LDELFLKEAKAH-NMIQLKGHRL--VGGIR 583 (621)
Q Consensus 520 gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~------------~~~-~~~~~~~~~~~~-~i~~~~g~~~--~~~~r 583 (621)
.|++.+.++..++++.+++.+++. ++ .....+ ... ....|.+.++++ ||....|+.. .+.||
T Consensus 255 ~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iR 332 (356)
T cd06451 255 EGLENRWARHRRLAKALREGLEAL-GL-KLLAKPELRSPTVTAVLVPEGVDGDEVVRRLMKRYNIEIAGGLGPTAGKVFR 332 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc-CC-eeccCcccCCCceEEEECCCCCCHHHHHHHHHHhCCEEEecccccccCCEEE
Confidence 478999999999999999999864 22 111100 001 235688999998 9998777654 35699
Q ss_pred eeeccCCCHHHHHHHHHHHHHH
Q psy8733 584 ASIYNAITVDEAVILVKFMKEF 605 (621)
Q Consensus 584 ~~~~~a~~~~~~~~l~~~~~~~ 605 (621)
++..+.++.||++++++.|++.
T Consensus 333 is~~~~~~~e~v~~~~~~l~~~ 354 (356)
T cd06451 333 IGHMGEATREDVLGVLSALEEA 354 (356)
T ss_pred EecCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999874
No 354
>PLN02397 aspartate transaminase
Probab=95.31 E-value=0.37 Score=53.31 Aligned_cols=136 Identities=13% Similarity=0.153 Sum_probs=75.8
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC--------cc-ccccc-c--eEEecccccc
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR--------KF-DVSKF-G--VIIAGAQKNI 330 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~--------pI-Dv~~~-g--vl~asaqK~l 330 (621)
.++++++.++.-.|.||...+. +++++++++|.|-+=.-... ++ .+... + +++.|-=|.+
T Consensus 192 ~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~ 271 (423)
T PLN02397 192 PDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNM 271 (423)
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccC
Confidence 3567888888778999999883 34578999999976332210 11 11111 2 6677889999
Q ss_pred CCCc--cEEEE--E-chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHH---HHhh-CCHHHHHHHHHH
Q psy8733 331 GPAG--ITVVI--V-REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW---IKRQ-GGLAKMEQNSLQ 401 (621)
Q Consensus 331 GP~G--lg~li--v-r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~---i~~~-gGl~~i~~r~~~ 401 (621)
|++| +|+++ . .++.++++... ... . .......+|.....+...+|+- ..+. .-++.+.++.++
T Consensus 272 ~~~G~RvG~~v~~~~~~~~~~~~~~~------~~~-~-~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 343 (423)
T PLN02397 272 GLYGERVGALSVVCKSADVAVRVKSQ------LKL-I-ARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIIS 343 (423)
T ss_pred CCccccceEEEEEeCCHHHHHHHHHH------HHH-H-HhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 9988 47764 3 34443322100 000 0 0112222344333443333321 0000 015667778888
Q ss_pred HHHHHHHHHHccC
Q psy8733 402 KSVLLYQEIDNSD 414 (621)
Q Consensus 402 la~~L~e~L~~~~ 414 (621)
+.+.+++.|.+++
T Consensus 344 rr~~l~~~L~~~~ 356 (423)
T PLN02397 344 MRQKLYDALEARG 356 (423)
T ss_pred HHHHHHHHHHhcC
Confidence 8899999999873
No 355
>KOG0053|consensus
Probab=95.27 E-value=0.32 Score=53.53 Aligned_cols=77 Identities=17% Similarity=0.162 Sum_probs=54.8
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC-ccccccc--ceEEeccccccC-CCc--cEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR-KFDVSKF--GVIIAGAQKNIG-PAG--ITVV 338 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~-pIDv~~~--gvl~asaqK~lG-P~G--lg~l 338 (621)
+.+++++|++=.-.|++....|+ +++.+|+++|||.+ |++. -+|.=.+ |+++-|+=|++| -.- .|++
T Consensus 159 i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnT--f~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~i 236 (409)
T KOG0053|consen 159 IKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNT--FGSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSV 236 (409)
T ss_pred hccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCC--cCcccccChhhcCCCEEEEeeeeeecCCcceeeeEE
Confidence 55689999988888888888886 45789999999976 5553 2233334 499999999995 222 4566
Q ss_pred EEc-hhHHhhh
Q psy8733 339 IVR-EDLLEYA 348 (621)
Q Consensus 339 ivr-~~ll~~~ 348 (621)
+.+ ++++.++
T Consensus 237 v~n~~~~~~~l 247 (409)
T KOG0053|consen 237 VLNSEELASRL 247 (409)
T ss_pred ecCcHHHHHHH
Confidence 664 6666544
No 356
>PRK06541 hypothetical protein; Provisional
Probab=95.19 E-value=0.81 Score=51.44 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=77.8
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEeccc-ccCCCcc--ccccc----ceEEeccccccCCCc--
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSS-NFLSRKF--DVSKF----GVIIAGAQKNIGPAG-- 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavS-s~G~~pI--Dv~~~----gvl~asaqK~lGP~G-- 334 (621)
+..+|.+-......|+..+ + +++++|+++|+|=++ ++|-.-- -.+.+ |+++. =|.+| .|
T Consensus 221 ~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt~--gK~l~-~G~~ 297 (460)
T PRK06541 221 TVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITC--AKGIT-SGYS 297 (460)
T ss_pred CEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEEe--ccccc-CCcc
Confidence 4555555555556677766 2 457899999999998 5652111 12223 35554 58886 22
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+...+....+ ...+++.-.| ....+..++|+.+.+. + +.++.+++.++|++.|.++
T Consensus 298 pigav~~~~~i~~~~~~~~~~~-------~~~~T~~gnp-~~~aaala~l~~l~~~-~---~~~~~~~~g~~l~~~L~~l 365 (460)
T PRK06541 298 PLGAMIASDRLFEPFLDGPTMF-------LHGYTFGGHP-VSAAVALANLDIFERE-G---LLDHVRDNEPAFRATLEKL 365 (460)
T ss_pred ceeEEEEcHHHHHHhhcCCCcc-------ccCCCCCCCH-HHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHh
Confidence 799999999877653211111 1123444333 4456666778888765 3 4577778888888888875
No 357
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=95.15 E-value=2.1 Score=47.82 Aligned_cols=138 Identities=14% Similarity=0.213 Sum_probs=70.8
Q ss_pred CCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC--cccccccc--eEEeccccccC-C-----Ccc
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR--KFDVSKFG--VIIAGAQKNIG-P-----AGI 335 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~--pIDv~~~g--vl~asaqK~lG-P-----~Gl 335 (621)
++++..|.++.-+ ..|+..++ +++++|+++++ ++ ...+. --.-.+|| ++ .+.||-|| | ||+
T Consensus 195 ~~~~a~v~vq~Pn-~~G~~ed~~~i~~~~h~~gal~~~-~a-d~~aL~~l~~Pge~GADI~-vg~~Q~fg~p~~~GGP~~ 270 (429)
T PF02347_consen 195 DDDTAAVMVQNPN-TFGVFEDIKEIADIAHAAGALVIV-GA-DPNALGGLKSPGEYGADIV-VGEHQTFGIPMGFGGPGA 270 (429)
T ss_dssp STTEEEEEEESS--TTSB--THHHHHHHHHHTT-EEEE-CG-GCCGCCTC--GGGGT-SEE-EECCTTTT---CCC-S--
T ss_pred ccCeEEEEeecCC-CCceEeeHHHHHHHHHHcCCEEEE-ec-CHHHHhCcCChhhcCccEE-eeCCCCCcccCCCCCCCe
Confidence 4567777766554 56998885 33577888776 22 21111 11224555 66 45577665 4 679
Q ss_pred EEEEEchhHHhhhCCCC----------Cce-eeccccccCCCc-cCCchH----HH-HHHHHHHHHHHHhhCCHHHHHHH
Q psy8733 336 TVVIVREDLLEYALPIT----------PTV-FHFKINADNNSV-YNTPPT----FV-VHVIQRVFAWIKRQGGLAKMEQN 398 (621)
Q Consensus 336 g~livr~~ll~~~~~~~----------P~~-ld~~~~~~~~s~-~~TP~v----~~-I~aL~~aL~~i~~~gGl~~i~~r 398 (621)
|++.+|+++..+++... +.| +.+.....+-.+ --|.|+ .+ ......-+-++-.+ |+.++.++
T Consensus 271 G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~-GL~~iA~~ 349 (429)
T PF02347_consen 271 GFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPE-GLREIAER 349 (429)
T ss_dssp EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred eeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHH-HHHHHHHH
Confidence 99999999876653210 111 111110000001 013332 12 12223334455556 89999999
Q ss_pred HHHHHHHHHHHHHcc
Q psy8733 399 SLQKSVLLYQEIDNS 413 (621)
Q Consensus 399 ~~~la~~L~e~L~~~ 413 (621)
...++.++.+.|.+.
T Consensus 350 ~~~~A~yl~~~L~~~ 364 (429)
T PF02347_consen 350 IHLNAHYLAERLKKI 364 (429)
T ss_dssp HHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999986
No 358
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=95.15 E-value=1.4 Score=49.86 Aligned_cols=123 Identities=15% Similarity=0.092 Sum_probs=73.6
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccccCCCccc----cccc----ceEEeccccccC--CC
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSRKFD----VSKF----GVIIAGAQKNIG--PA 333 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~~pID----v~~~----gvl~asaqK~lG--P~ 333 (621)
+..+|.+-..-...|.+.|. +++++|+++|+|=+++ |- ... .+.+ |++++ -|.+| -|
T Consensus 246 ~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~t-Gf-R~g~~ga~~~~gv~PDi~t~--gK~lggG~P 321 (474)
T PLN02482 246 EIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMT-GF-RIAYGGAQEYFGITPDLTTL--GKVIGGGLP 321 (474)
T ss_pred ceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-Ce-ecCcchHhHHhCCCCCEEEe--cchhhCCCc
Confidence 45555544444445666652 4568999999999984 32 111 0112 24444 58884 22
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.+..++++.+.+.+..+.+ ..++++-. .....+..++|+.+.+. .+.++..++.++|+++|.++
T Consensus 322 -igav~g~~ei~~~~~~~~~~~--------~~~T~~gn-pl~~aAala~L~~l~~~----~~~~~~~~~g~~l~~~L~~l 387 (474)
T PLN02482 322 -VGAYGGRREIMEMVAPAGPMY--------QAGTLSGN-PLAMTAGIHTLKRLQQP----GTYEYLDKITKKLIQGILEA 387 (474)
T ss_pred -eEEEEEcHHHHHhhccCCCcc--------cccCcchh-HHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHHHHHHH
Confidence 788899999987653211111 12344433 33455566789988764 35667777888888888765
No 359
>PRK05965 hypothetical protein; Provisional
Probab=95.12 E-value=3.5 Score=46.38 Aligned_cols=131 Identities=13% Similarity=0.119 Sum_probs=79.6
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccC--CC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIG--PA 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lG--P~ 333 (621)
++..+|.+-......|+..|- +++++|+++|+|=+|+ +|- ..+-.+.+| +++.| |.+| --
T Consensus 214 ~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~ 291 (459)
T PRK05965 214 DNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPDLMTVA--KGLTSGYV 291 (459)
T ss_pred CceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCCeEEec--hhhccCCc
Confidence 345666655554555776652 4578999999999987 432 122233343 66664 8883 21
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
=+|.+++++++.+...+..+.. ......++|+--|+ +..+..++|+.+.++ ++.++.+++.++|.+.|.++
T Consensus 292 Pi~av~~~~~i~~~~~~~~~~~----~~~~h~~T~~gnpl-~~Aaa~a~L~~l~~~----~l~~~~~~~g~~l~~~l~~l 362 (459)
T PRK05965 292 PMGAVLMSDHVYQGIADGAGAA----APVGHGYTYSAHPV-SAAVGLEVLRLYHEG----GLLANGQKAGPRFAAGLDAL 362 (459)
T ss_pred ceeEEEEcHHHHHHHhcccccc----ccccccCCCCCCHH-HHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHhh
Confidence 2889999999987553211000 00012455654444 455666689999876 35556777888888888765
No 360
>PRK08637 hypothetical protein; Provisional
Probab=95.12 E-value=1.4 Score=47.97 Aligned_cols=70 Identities=11% Similarity=0.015 Sum_probs=42.0
Q ss_pred CCceEEEEecccccccccccc-----c---cc-----cCCCcEEEecccc-c--CCCc-cc-----ccccc-eE---Eec
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----I---PD-----SQGIPLVSDMSSN-F--LSRK-FD-----VSKFG-VI---IAG 325 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i---~~-----~~g~llvvDavSs-~--G~~p-ID-----v~~~g-vl---~as 325 (621)
+..+++.++...|+||...+. + ++ .+++++|+|-+=. + ...+ .+ .+..+ ++ +.|
T Consensus 145 ~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s 224 (388)
T PRK08637 145 KGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDG 224 (388)
T ss_pred CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEecc
Confidence 344566677678999998873 2 22 2789999998532 1 1111 11 12223 32 238
Q ss_pred cccccCCCc--cEEEEEc
Q psy8733 326 AQKNIGPAG--ITVVIVR 341 (621)
Q Consensus 326 aqK~lGP~G--lg~livr 341 (621)
.=|.++.+| +|.+++.
T Consensus 225 ~SK~~~~pGlRlG~~~~~ 242 (388)
T PRK08637 225 ATKEEFVWGFRVGFITFG 242 (388)
T ss_pred ccccCCCcccceEEEEEc
Confidence 889888777 6777754
No 361
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=95.07 E-value=0.046 Score=58.60 Aligned_cols=156 Identities=16% Similarity=0.157 Sum_probs=108.7
Q ss_pred hHHHHHhhccccc-ccCCcEEeeecHhHh-hhcCCC---C-CceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCC
Q psy8733 448 FFGVIIAGAQKNI-GPAGITVVIVREDLL-EYALPI---T-PTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGG 521 (621)
Q Consensus 448 ~~~~~~a~~qk~~-GpaGl~v~iv~~~~l-~~~~~~---~-p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg 521 (621)
..|++.++.||-+ ||.|.++++++++.. ...... . ...++........--..|||+..++.+...|+|+.+. |
T Consensus 189 ~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~-g 267 (376)
T TIGR01977 189 AIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKI-G 267 (376)
T ss_pred CCCEEEecccccccCCCCceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHh-C
Confidence 4688899999987 499999999999862 111100 0 0000000001111224699999999999999999865 7
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCccc-ccCCCC----------Cccc-HHHHHHHHHc-cCccccCC------------
Q psy8733 522 LAKMEQNSLQKSVLLYQEIDNSDKFYE-CPVQAG----------FPLD-ELFLKEAKAH-NMIQLKGH------------ 576 (621)
Q Consensus 522 ~~~~~~~~~~ka~~lY~~id~~~~~~~-~~v~~~----------~~~~-~~~~~~~~~~-~i~~~~g~------------ 576 (621)
++.+.++..+.++.+++.|.+.+++-. .+.++. ...+ .++.+.+.++ ||....|+
T Consensus 268 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~ 347 (376)
T TIGR01977 268 IANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGLHCAPLAHKTIGT 347 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCCCHHHHHHHHhccCCEEEEcccccchHHHHHhCC
Confidence 999999999999999999987654311 111110 0122 4577888877 99977765
Q ss_pred CCCCccceeeccCCCHHHHHHHHHHHHH
Q psy8733 577 RLVGGIRASIYNAITVDEAVILVKFMKE 604 (621)
Q Consensus 577 ~~~~~~r~~~~~a~~~~~~~~l~~~~~~ 604 (621)
...+.||++.-+.+|.+|++.|++.|++
T Consensus 348 ~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 348 FATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred CCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 1357799999999999999999999975
No 362
>PRK12403 putative aminotransferase; Provisional
Probab=95.07 E-value=3.2 Score=46.74 Aligned_cols=127 Identities=10% Similarity=0.090 Sum_probs=72.3
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEecccccCCCcc---ccccc----ceEEeccccccC--CCc
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSNFLSRKF---DVSKF----GVIIAGAQKNIG--PAG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs~G~~pI---Dv~~~----gvl~asaqK~lG--P~G 334 (621)
+..+|.+-..-...|+..| + +++++|+++|+|=+++-..+.= -.+.+ |+++. -|.+| ---
T Consensus 222 ~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~--gK~lggG~~P 299 (460)
T PRK12403 222 NVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLSI--AKGLTSGYVP 299 (460)
T ss_pred ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCCeEEE--cccccccccc
Confidence 4555555444444566665 1 4678999999999986332211 11233 35554 58884 212
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHH-HHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSL-QKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~-~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.+....+ ...++++- |..+..+..++|+.+.++ + +.++.+ ++.++|++.|.++
T Consensus 300 iga~v~~~~i~~~~~~~~~~~-------~~~~T~~g-nPl~~Aaala~L~~i~~~-~---l~~~~~~~~g~~l~~~L~~l 367 (460)
T PRK12403 300 MGGLVLSKRIAEALVEQGGVF-------AHGLTYSG-HPVAAAVAIANLKALRDE-G---VVTRVKDDTGPYLQRCLREV 367 (460)
T ss_pred eEEEEECHHHHHHHhcCCCcc-------ccCCCCCC-CHHHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHH
Confidence 667778988876543211111 12344433 345566777889999876 4 344453 5666777766643
No 363
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=95.05 E-value=0.054 Score=58.89 Aligned_cols=158 Identities=17% Similarity=0.136 Sum_probs=112.3
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCC--ceeeeee--------cccCCCccCCCchhHHHHHHHHHHHHHh
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITP--TVFHFKI--------NADNNSVYNTPPTFVVHVIQRVFAWIKR 518 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p--~~~~y~~--------~~~~~s~~nTP~~~~iy~~~~vl~~~~~ 518 (621)
.|+..+|.+|-+||.|+++++++++++++..+... .+.++.. .+.... .-|||+.+++-+...++|+.+
T Consensus 210 ~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~GT~~~~~~~a~~~al~~l~~ 288 (398)
T TIGR03392 210 IDFYAFSGHKLYGPTGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFE-AGTPNIAGVIGLSAALEWLTD 288 (398)
T ss_pred CCEEEEecccccCCCceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhcc-CCCCCHHHHHHHHHHHHHHHH
Confidence 46667899998999999999999999876433210 0000000 001111 359999999999999999965
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhccCCccccc-CCC-------CCcccHHHHHHHHHccCccccCC----------CCCC
Q psy8733 519 QGGLAKMEQNSLQKSVLLYQEIDNSDKFYECP-VQA-------GFPLDELFLKEAKAHNMIQLKGH----------RLVG 580 (621)
Q Consensus 519 ~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~-v~~-------~~~~~~~~~~~~~~~~i~~~~g~----------~~~~ 580 (621)
. |++.++++..+-++.+++.+++.+++-... ... ......++.+.++++||....|. +..|
T Consensus 289 ~-g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~ 367 (398)
T TIGR03392 289 I-DIAAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSG 367 (398)
T ss_pred h-CHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCcCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCC
Confidence 4 688999999999999999998765431110 010 00123568888899999876665 2246
Q ss_pred ccceeeccCCCHHHHHHHHHHHHHHHHH
Q psy8733 581 GIRASIYNAITVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 581 ~~r~~~~~a~~~~~~~~l~~~~~~~~~~ 608 (621)
.||+|.-.-.|.+|++.|++.|++..++
T Consensus 368 ~iRvS~~~~~t~~ei~~l~~~l~~~~~~ 395 (398)
T TIGR03392 368 TLRASFAPYNTQQDVDALVDAVGAALEL 395 (398)
T ss_pred EEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 7999998889999999999999987664
No 364
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=94.95 E-value=0.17 Score=54.97 Aligned_cols=122 Identities=18% Similarity=0.338 Sum_probs=79.4
Q ss_pred Eecccccccccccc-----c---cccCCCcEEEec-ccccCCCcccccccc-----------eEEeccccccCCCc--cE
Q psy8733 279 YCDNETVDGVEFNY-----I---PDSQGIPLVSDM-SSNFLSRKFDVSKFG-----------VIIAGAQKNIGPAG--IT 336 (621)
Q Consensus 279 ~thnET~tGv~~p~-----i---~~~~g~llvvDa-vSs~G~~pIDv~~~g-----------vl~asaqK~lGP~G--lg 336 (621)
+|||- ||+-... + .++++.+-++|. -|.|+.. ++-|.++ +++.|.-|++|--| +|
T Consensus 180 CcHNP--TG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~G-leeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVG 256 (396)
T COG1448 180 CCHNP--TGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADG-LEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVG 256 (396)
T ss_pred CCCCC--CCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccc-hHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccc
Confidence 66754 5886552 2 347888888996 5888887 7776653 77888899997333 33
Q ss_pred EEE---EchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH-------HHHhhCCHHHHHHHHHHHHHHH
Q psy8733 337 VVI---VREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA-------WIKRQGGLAKMEQNSLQKSVLL 406 (621)
Q Consensus 337 ~li---vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~-------~i~~~gGl~~i~~r~~~la~~L 406 (621)
.+. =+.+...+.....+ ..-+..|-.||..+....+..|+ |..| ++.|.+|..++...+
T Consensus 257 a~~vva~~~~~a~~v~sqlk--------~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~E---l~~Mr~Ri~~mR~~l 325 (396)
T COG1448 257 ALSVVAEDAEEADRVLSQLK--------AIIRTNYSNPPAHGAAVVATILNNPELRAEWEQE---LEEMRQRILEMRQAL 325 (396)
T ss_pred eeEEEeCCHHHHHHHHHHHH--------HHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 332 22333332211000 11245677888888777766654 5443 789999999999999
Q ss_pred HHHHHccC
Q psy8733 407 YQEIDNSD 414 (621)
Q Consensus 407 ~e~L~~~~ 414 (621)
.+.|.+.+
T Consensus 326 v~~L~~~~ 333 (396)
T COG1448 326 VDALKALG 333 (396)
T ss_pred HHHHHhhC
Confidence 99998853
No 365
>PRK07482 hypothetical protein; Provisional
Probab=94.95 E-value=2 Score=48.27 Aligned_cols=131 Identities=12% Similarity=0.117 Sum_probs=77.1
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccC--CC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIG--PA 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lG--P~ 333 (621)
+++.+|.+-......|+..|- +++++|+++|+|=+|+ +|- ..+-.+.+| +++.| |.+| -.
T Consensus 219 ~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~ 296 (461)
T PRK07482 219 DTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLITVA--KGLTSAYA 296 (461)
T ss_pred CcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEEEc--cccccCcc
Confidence 345666655554555777552 4578999999999987 432 112223343 66664 8883 22
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
-+|.+++++++.+.+....+. .......++|+- |..+..+..++|+.+.+. + +.++.+++.++|.+.|.++
T Consensus 297 Pi~av~~~~~i~~~~~~~~~~----~~~~~h~~T~~g-npl~~Aaa~a~L~~~~~~-~---l~~~~~~~g~~l~~~L~~l 367 (461)
T PRK07482 297 PLSGSIVGEKVWDVLEQGSDE----HGAIGHGWTYSG-HPICAAAALANLDILERE-N---LVGNAAEVGAYFRARLRAA 367 (461)
T ss_pred ccceeeecHHHHHHHhccccc----CCccccCCCCCc-CHHHHHHHHHHHHHHHhC-C---HHHHHHHHHHHHHHHHHHH
Confidence 378888999887655321110 000112345543 334566777889999876 3 4455566777777777653
No 366
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=94.84 E-value=1 Score=50.36 Aligned_cols=130 Identities=15% Similarity=0.185 Sum_probs=77.8
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEeccc-ccCC--Ccccccccc----eEEeccccccC---CC
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSS-NFLS--RKFDVSKFG----VIIAGAQKNIG---PA 333 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavS-s~G~--~pIDv~~~g----vl~asaqK~lG---P~ 333 (621)
+..+|.+-......|+..| + +++++|+++|+|=++ ++|. ...-.+.+| ++++ =|.+| -|
T Consensus 215 ~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDivt~--gK~l~gG~~P 292 (442)
T PRK13360 215 TIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLTC--AKGLTNGAIP 292 (442)
T ss_pred cEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCceeee--eeccccCccc
Confidence 4555555444444566666 2 456899999999998 5643 122223333 4544 48883 22
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.+..++++.+......+....+ -..++++.. .....+..++|+.+.+. + +.++.+++.+++++.|.++
T Consensus 293 -~gav~~~~~i~~~~~~~~~~~~~~----~~~~T~~g~-pl~~aaa~a~L~~l~~~-~---l~~~~~~~g~~l~~~l~~l 362 (442)
T PRK13360 293 -MGAVFVSSEIHDAFMQGPEAGIEF----FHGYTYSGH-PLACAAALATLDLYERE-G---LLTRAARLAPYWEDALHSL 362 (442)
T ss_pred -eEEEEEcHHHHHHhhcCCcccccc----ccCCCCCCC-HHHHHHHHHHHHHHHhC-C---HHHHHHHHHHHHHHHHHHh
Confidence 777888999876543211100000 123566544 44567777789999876 4 4567777888888888765
Q ss_pred C
Q psy8733 414 D 414 (621)
Q Consensus 414 ~ 414 (621)
.
T Consensus 363 ~ 363 (442)
T PRK13360 363 R 363 (442)
T ss_pred h
Confidence 3
No 367
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=94.82 E-value=0.7 Score=51.08 Aligned_cols=123 Identities=16% Similarity=0.223 Sum_probs=74.2
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccccCCC---ccccccc----ceEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSR---KFDVSKF----GVIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~~---pIDv~~~----gvl~asaqK~lGP~G- 334 (621)
++..+|.+-.....+|+..+- +++++|+++|+|=+++-..+ ..-++.+ |++++ =|.+| +|
T Consensus 196 ~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~l--sK~l~-~G~ 272 (420)
T TIGR00700 196 NNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLITT--AKSLA-DGL 272 (420)
T ss_pred CcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEEEe--ecccc-CCc
Confidence 356666655555556776652 45689999999999773322 1122223 35544 58886 23
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.+ ....++++.. .....+..++|+++.+. + +.++.+++.+++++.|+++
T Consensus 273 pig~v~~~~~i~~~~~~-----------~~~~~T~~~~-pl~~aaa~a~l~~l~~~-~---~~~~~~~~g~~l~~~L~~l 336 (420)
T TIGR00700 273 PLSGVTGRAEIMDAPAP-----------GGLGGTYAGN-PLACAAALAVLAIIESE-G---LIERARQIGRLVTDRLTTL 336 (420)
T ss_pred ceEEEEecHHHHhhcCC-----------CCcCCCCCcC-HHHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHH
Confidence 7889999998765432 0123455433 44566777788988765 4 3445555666677766654
No 368
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=94.70 E-value=0.073 Score=57.94 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=113.3
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCC--cee---eeee-----cccCCCccCCCchhHHHHHHHHHHHHHh
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITP--TVF---HFKI-----NADNNSVYNTPPTFVVHVIQRVFAWIKR 518 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p--~~~---~y~~-----~~~~~s~~nTP~~~~iy~~~~vl~~~~~ 518 (621)
.|+..+|.+|-+||.|++++++++++++...+..- ..+ +|.. ...... .-|||+.+++.+...++|+.+
T Consensus 213 ~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~Gt~~~~~~~al~~al~~l~~ 291 (401)
T PRK10874 213 IDFYAFSGHKLYGPTGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFE-AGTPNVAGVIGLSAALEWLAD 291 (401)
T ss_pred CCEEEEecccccCCCccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhcc-CCCcCHHHHHHHHHHHHHHHH
Confidence 56677899998899999999999999887443210 111 1110 011111 359999999999999999987
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhccCCccccc-CCCC------Cc-ccHHHHHHHHHccCccccCCC----------CCC
Q psy8733 519 QGGLAKMEQNSLQKSVLLYQEIDNSDKFYECP-VQAG------FP-LDELFLKEAKAHNMIQLKGHR----------LVG 580 (621)
Q Consensus 519 ~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~-v~~~------~~-~~~~~~~~~~~~~i~~~~g~~----------~~~ 580 (621)
. |.+.++++..+-++.+.+.+.+.+++-... .... .. ...++.+.++++||+...|.. ..|
T Consensus 292 ~-g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~ 370 (401)
T PRK10874 292 I-DINQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGVHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTG 370 (401)
T ss_pred h-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCcCHHHHHHHHHHCCcEEeccccchHHHHHHhCCCC
Confidence 6 577888888888899999998766531111 0110 01 235677888999999766542 247
Q ss_pred ccceeeccCCCHHHHHHHHHHHHHHHHH
Q psy8733 581 GIRASIYNAITVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 581 ~~r~~~~~a~~~~~~~~l~~~~~~~~~~ 608 (621)
.||+|.-.-.|.||+++|++.|+++.++
T Consensus 371 ~iRiS~~~~nt~edid~ll~al~~~~~~ 398 (401)
T PRK10874 371 TLRASFAPYNTQSDVDALVNAVDRALEL 398 (401)
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999987653
No 369
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=94.65 E-value=3.7 Score=46.15 Aligned_cols=130 Identities=13% Similarity=0.131 Sum_probs=77.4
Q ss_pred CCceEEEEec-ccccccccccc---------ccccCCCcEEEecccc-cCCC--cccccccc----eEEeccccccC--C
Q psy8733 272 PEASYLYYCD-NETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR--KFDVSKFG----VIIAGAQKNIG--P 332 (621)
Q Consensus 272 ~~t~~V~~th-nET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~--pIDv~~~g----vl~asaqK~lG--P 332 (621)
+++.+|.+-. .....|+..+- +++++|+++|+|=+|+ +|-. .+-.+.+| +++.| |.+| -
T Consensus 220 ~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt~g--Kgl~gG~ 297 (453)
T PRK06943 220 GKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLCLS--KGISGGY 297 (453)
T ss_pred CceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEeee--hhhccCc
Confidence 3555665544 23445776652 4568999999999986 5421 11123343 66664 8883 2
Q ss_pred CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 333 AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
-=+|.+..++++.+...+..+. ......++|+ -|..+..+..++|+.+.++ + +.++.+++.++|.+.|.+
T Consensus 298 ~Pi~av~~~~ei~~~~~~~~~~-----~~~~~~~T~~-gnpl~~aaa~a~L~~i~~~-~---l~~~~~~~G~~l~~~L~~ 367 (453)
T PRK06943 298 LPLSLVLSRDAIFAAFYDDDVT-----RGFLHSHSYT-GNPLACRAALATLDLFAED-D---VLARNARKSARLRAALAP 367 (453)
T ss_pred ccceEEEEcHHHHHhhcccCcc-----CCccCCCCCC-CCHHHHHHHHHHHHHHHhc-C---HHHHHHHHHHHHHHHHHH
Confidence 1288999999987655321110 0001234553 2445567777889999876 3 455666777788887776
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
+
T Consensus 368 l 368 (453)
T PRK06943 368 L 368 (453)
T ss_pred H
Confidence 4
No 370
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=94.37 E-value=0.07 Score=58.31 Aligned_cols=154 Identities=18% Similarity=0.151 Sum_probs=104.9
Q ss_pred hHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 448 FFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 448 ~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
..|++.+|+||.+||.|+++++++++.+.+..+. +. ...+. ..-...|||+..++-++..|+++++ +++.+.+
T Consensus 194 ~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~---~~-g~~~~-~~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~ 266 (402)
T TIGR02006 194 KVDLMSISGHKIYGPKGIGALYVRRKPRVRLEAL---IH-GGGHE-RGMRSGTLPTHQIVGMGEAFRIAKE--EMAQDTA 266 (402)
T ss_pred CCCEEEEehhhhcCCCceEEEEEccCCCCCCCce---ec-CCCcc-CCccCCCccHHHHHHHHHHHHHHHH--hHHHHHH
Confidence 4688889999999999999999999877653332 11 11111 1223479999999999999999875 5888899
Q ss_pred HHHHHHHHHHHHHhccCCccc--ccC--CCC---C--c-ccH-HHHHHHHHccCccccCC--C-----------------
Q psy8733 528 NSLQKSVLLYQEIDNSDKFYE--CPV--QAG---F--P-LDE-LFLKEAKAHNMIQLKGH--R----------------- 577 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~~~~~--~~v--~~~---~--~-~~~-~~~~~~~~~~i~~~~g~--~----------------- 577 (621)
+.++-++.+.+.|...++... .+. .+. . . ... .+...+ +||....|. .
T Consensus 267 ~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~~~~~~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~ 344 (402)
T TIGR02006 267 HVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNYVEGESLIMAL--KDLAVSSGSACTSASLEPSYVLRALGIND 344 (402)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeCcCHHHHHHhc--CCEEEechhhcCCCCCCccHHHHHcCCCh
Confidence 999999999999976554211 010 000 0 1 111 233222 355432221 1
Q ss_pred --CCCccceeeccCCCHHHHHHHHHHHHHHHHHcC
Q psy8733 578 --LVGGIRASIYNAITVDEAVILVKFMKEFRHKHS 610 (621)
Q Consensus 578 --~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~~ 610 (621)
..|.+|+|..+..|.||++.|++.|+++.++..
T Consensus 345 ~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~ 379 (402)
T TIGR02006 345 ELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLR 379 (402)
T ss_pred hhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 136799999999999999999999999887653
No 371
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=94.31 E-value=2.7 Score=47.29 Aligned_cols=103 Identities=16% Similarity=0.221 Sum_probs=63.5
Q ss_pred ccccCCCcEEEecccccCCCcccc---cccc----eEEeccccccCC--CccEEEEEchhHHhhhCCCCCceeecccccc
Q psy8733 293 IPDSQGIPLVSDMSSNFLSRKFDV---SKFG----VIIAGAQKNIGP--AGITVVIVREDLLEYALPITPTVFHFKINAD 363 (621)
Q Consensus 293 i~~~~g~llvvDavSs~G~~pIDv---~~~g----vl~asaqK~lGP--~Glg~livr~~ll~~~~~~~P~~ld~~~~~~ 363 (621)
+++++|+++|+|=+|+-.++.=.+ +.+| +++. -|.+|- -=+|.++.++++.+.. . ..+ .
T Consensus 257 lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~~--gKgl~gG~~P~~av~~~~~i~~~~-~--~~~-------~ 324 (459)
T PRK06082 257 ICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILCI--GKGLGGGLVPIAAMITKDKYNTAA-Q--ISL-------G 324 (459)
T ss_pred HHHHcCCEEEEechhhCCCccchhhHhHhhCCCCCEEEe--cccccCCCCcceEEEEcHHHHhhc-c--CCC-------C
Confidence 456899999999998733332211 3343 5554 588842 1178888888865321 1 000 1
Q ss_pred CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 364 NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 364 ~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
.++++..|+. ..+..++|+.+.++ + +.++.+++.++|++.|+++
T Consensus 325 -~~T~~gnpl~-~aaa~a~L~~l~~~-~---l~~~~~~~g~~l~~~L~~l 368 (459)
T PRK06082 325 -HYTHEKSPLG-CAAALATIEVIEQE-G---LLEKVKADSQFMRERLLEM 368 (459)
T ss_pred -CCCCCcCHHH-HHHHHHHHHHHHhc-C---HHHHHHHHHHHHHHHHHHH
Confidence 1455544444 56666789998775 3 5567777888888888764
No 372
>PRK07046 aminotransferase; Validated
Probab=94.18 E-value=3.4 Score=46.47 Aligned_cols=127 Identities=12% Similarity=0.060 Sum_probs=72.9
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccc----cCCCccccccc----ceEEeccccccC--CC
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN----FLSRKFDVSKF----GVIIAGAQKNIG--PA 333 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs----~G~~pIDv~~~----gvl~asaqK~lG--P~ 333 (621)
+..+|.+=......|...|. +++++|+++|+|=+++ +|... ..+ |+++. -|.+| -|
T Consensus 218 ~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~---~~~gv~PDi~t~--gK~lggG~P 292 (453)
T PRK07046 218 DVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYT---RAHGLEPDFLVV--GKPIAGGVP 292 (453)
T ss_pred CeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchh---HHhCCCccceee--hhhhcCCCc
Confidence 44555443333334555552 4568999999999995 44321 122 35554 48883 33
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+|.+..|+++.+.+.+...... .......++++- |.....+..++|+.+.+. + ..++.+++.++|++.|.+
T Consensus 293 -i~av~g~~~i~~~~~~~~~~~~--~~~~~~~~T~~g-npl~~aa~~a~L~~l~~~-~---~~~~~~~~g~~l~~~L~~ 363 (453)
T PRK07046 293 -CAVYGFSAELAERAQAAKASAP--PGHSGIGTTLSA-NALAMAAMRATLAEVMTE-A---AYAHMLALAARLAAGLRA 363 (453)
T ss_pred -ceeeeehHHHHHHHhhccccCC--CCCceeCCCCcc-cHHHHHHHHHHHHHHhcc-c---HHHHHHHHHHHHHHHHHH
Confidence 7889999999876543111000 000112345543 334466777788888665 3 355666677777777765
No 373
>KOG0256|consensus
Probab=94.17 E-value=0.51 Score=51.73 Aligned_cols=131 Identities=14% Similarity=0.125 Sum_probs=80.5
Q ss_pred CCCCCceEEEEecccccccccccc--------ccccCCCcEEEecccc---cCCCcc------------cccccceEEec
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSN---FLSRKF------------DVSKFGVIIAG 325 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs---~G~~pI------------Dv~~~gvl~as 325 (621)
+.+.+.+.|.++.-+|+-|+..+- .+..+++.+|+|=+=+ ++...+ |.+.. -++-|
T Consensus 222 ~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rv-Hivys 300 (471)
T KOG0256|consen 222 KLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRV-HIVYS 300 (471)
T ss_pred HhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcE-EEEEE
Confidence 456789999999999999998872 2456889999996432 222111 11111 45666
Q ss_pred cccccCCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCch--HHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q psy8733 326 AQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPP--TFVVHVIQRVFAWIKRQGGLAKMEQNSLQ 401 (621)
Q Consensus 326 aqK~lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~--v~~I~aL~~aL~~i~~~gGl~~i~~r~~~ 401 (621)
--|=+|-|| +|++|-..+-+-.+ +.+-+.|+--+ +.-+.+--+.=+|+.++ =+..-.+|.+.
T Consensus 301 lSKD~GlpGfRvGviYS~ne~Vvsa-------------A~kmssf~~vSs~tQ~~la~LLSD~~f~~~-yl~en~~Rl~~ 366 (471)
T KOG0256|consen 301 LSKDFGLPGFRVGVIYSNNEDVVSA-------------ATKMSSFGLVSSQTQYLLASLLSDEEFTRE-YLRENNKRLRI 366 (471)
T ss_pred eccccCCCceEEEEEEecChHHHHH-------------HHHHhhccCCcHHHHHHHHHHhchHHHHHH-HHHHHHHHHHH
Confidence 779999888 57777665543221 11222333222 22222222222555554 47788888888
Q ss_pred HHHHHHHHHHccC
Q psy8733 402 KSVLLYQEIDNSD 414 (621)
Q Consensus 402 la~~L~e~L~~~~ 414 (621)
..+++.++|++++
T Consensus 367 rh~~~~~gLk~lg 379 (471)
T KOG0256|consen 367 RHRYIVEGLKALG 379 (471)
T ss_pred HHHHHHhhHHhcC
Confidence 8899999999986
No 374
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=93.70 E-value=7.9 Score=43.57 Aligned_cols=130 Identities=9% Similarity=0.087 Sum_probs=77.3
Q ss_pred CCceEEEEec-ccccccccccc---------ccccCCCcEEEecccc-cCCCcc---ccccc----ceEEeccccccC--
Q psy8733 272 PEASYLYYCD-NETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSRKF---DVSKF----GVIIAGAQKNIG-- 331 (621)
Q Consensus 272 ~~t~~V~~th-nET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~pI---Dv~~~----gvl~asaqK~lG-- 331 (621)
++..+|.+-. .....|+..+- +++++|+++|+|=+++ +| +.= -.+.+ |+++. -|.+|
T Consensus 222 ~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~G-RtG~~~a~~~~gv~PDiv~~--gK~l~gG 298 (460)
T PRK06916 222 EEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFG-RTGKMFACEHENVTPDIMTA--GKGLTGG 298 (460)
T ss_pred CcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCC-cCchhhHHHhcCCCCCeeee--ehhhhcC
Confidence 3455555543 23444666542 4568999999999976 43 211 11223 35555 48883
Q ss_pred CCccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 332 P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
---+|.+..++++.+...+.... .......++++..|+ ...+..++|+.+.+. + +.++.+++.+++++.|+
T Consensus 299 ~~Pi~av~~~~ei~~~~~~~~~~----~~~~~~~~T~~gnpl-~~aaa~a~l~~l~~~-~---l~~~~~~~g~~l~~~l~ 369 (460)
T PRK06916 299 YLPIAITVTTDEIYNAFYGDYEE----QKTFFHGHSYTGNPL-GCAVALANLELYEKT-N---LIEQVARKTEYVATQLE 369 (460)
T ss_pred ccccceeeecHHHHHHhhccccc----cCccccCCCCCCCHH-HHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHH
Confidence 22288999999987654321000 000112346655444 466677788988775 3 45677888888888888
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
++
T Consensus 370 ~l 371 (460)
T PRK06916 370 DL 371 (460)
T ss_pred Hh
Confidence 75
No 375
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=93.69 E-value=2.9 Score=45.61 Aligned_cols=101 Identities=13% Similarity=0.271 Sum_probs=59.4
Q ss_pred CCCceEEEEecccccccccccc---------ccccCCCcEEEecccccCC---Ccccccccc----eEEeccccccC--C
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLS---RKFDVSKFG----VIIAGAQKNIG--P 332 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~---~pIDv~~~g----vl~asaqK~lG--P 332 (621)
.+++++|.+-+..-..|+..+- +++++|+++|+|-+|+ |- .....+.++ +++. -|.+| -
T Consensus 160 ~~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~t-G~RtG~~~a~~~~gv~PDiv~~--gK~lggG~ 236 (364)
T PRK04013 160 TKETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQS-GLRTGKFLAIEHYKVEPDIVTM--GKGIGNGV 236 (364)
T ss_pred cCCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-cCCCCchhHHHhcCCCCCEEEe--cccccCCc
Confidence 3567777776665555665441 4578999999999987 21 122333444 5555 48883 2
Q ss_pred CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCH
Q psy8733 333 AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGL 392 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl 392 (621)
| ++.++.++++ . +. ...++++--| .+..+..++|+.+.++ ++
T Consensus 237 P-~~a~~~~~~~----~---~~--------~~~~T~~gnp-~~~aaa~a~l~~i~~~-~l 278 (364)
T PRK04013 237 P-VSLTLTNFDV----E---RG--------KHGSTFGGNP-LACKAVAVTLRILRRE-RL 278 (364)
T ss_pred e-eEEEEecccc----c---CC--------CcCCCCCcCH-HHHHHHHHHHHHHHhc-cH
Confidence 2 5666666553 0 10 1234554333 4556666789999887 54
No 376
>KOG0629|consensus
Probab=93.59 E-value=0.98 Score=49.83 Aligned_cols=140 Identities=14% Similarity=0.168 Sum_probs=88.8
Q ss_pred ceEEEEecccccccccccc-----ccccCCCcEEEecccccCC-Ccccc---------cccceEEeccccccC-CCccEE
Q psy8733 274 ASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS-RKFDV---------SKFGVIIAGAQKNIG-PAGITV 337 (621)
Q Consensus 274 t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~-~pIDv---------~~~gvl~asaqK~lG-P~Glg~ 337 (621)
+-+|..|...|+.|..-|+ +++.++..++|||+= |+ .-+.. +..+-+....||++| |-=-+.
T Consensus 254 Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAw--GGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa 331 (510)
T KOG0629|consen 254 PFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAW--GGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSA 331 (510)
T ss_pred CeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeeccc--ccccccChhhHhhccCccccCceeecHHHhhcCcchhhH
Confidence 5788999999999998886 456899999999973 33 22221 223478899999998 766666
Q ss_pred EEEchh-HHhhhCCCCCcee-------eccccc-cCCCccC-CchHH-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q psy8733 338 VIVRED-LLEYALPITPTVF-------HFKINA-DNNSVYN-TPPTF-VVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLL 406 (621)
Q Consensus 338 livr~~-ll~~~~~~~P~~l-------d~~~~~-~~~s~~~-TP~v~-~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L 406 (621)
...|.+ +++++......|+ |-.... ++...-+ --+++ .++.+.+ +..+|.++...+..++|+++
T Consensus 332 ~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwka-----KG~~Gfe~~v~k~~~lA~yl 406 (510)
T KOG0629|consen 332 FLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKA-----KGTQGFEAQVDKCLRLAEYL 406 (510)
T ss_pred HHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHHHHHh-----cccccHHHHHHHHHHHHHHH
Confidence 677755 4666554333332 111000 1111112 22333 2222110 12238999999999999999
Q ss_pred HHHHHccCCcccCc
Q psy8733 407 YQEIDNSDKFYECP 420 (621)
Q Consensus 407 ~e~L~~~~g~~~~~ 420 (621)
++.|.+-+|++...
T Consensus 407 ~~~lrer~~~~~l~ 420 (510)
T KOG0629|consen 407 YDRLREREGFEMLF 420 (510)
T ss_pred HHHHHhcccceehh
Confidence 99999998877654
No 377
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=93.52 E-value=0.17 Score=54.80 Aligned_cols=151 Identities=13% Similarity=0.160 Sum_probs=106.7
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcC--------
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQG-------- 520 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~g-------- 520 (621)
.|++.+|.+|.+|| +++++++++++++...+..... .|...+.. -...|||+..++.+...++++.+.|
T Consensus 209 ~d~~~~s~~K~~g~-~~G~l~~~~~~~~~l~~~~~~~-~~~~~~~~-~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~ 285 (397)
T TIGR01976 209 ADFLTCSAYKFFGP-HMGILWGRPELLMNLPPYKLTF-SYDTGPER-FELGTPQYELLAGVVAAVDYLAGLGESANGSRR 285 (397)
T ss_pred CCEEEEechhhcCC-ceEEEEEcHHHHhhCCCccccC-ccCCCcch-hcCCCCCHHHHHHHHHHHHHHHHhCcccccchh
Confidence 46677899999997 4899999999987654432221 13332222 1236999999999999999998887
Q ss_pred -----ChHHHHHHHHHHHHHHHHHHhccCCc--cccc-CC-C--------CCcccHHHHHHHHHccCccccC--C-----
Q psy8733 521 -----GLAKMEQNSLQKSVLLYQEIDNSDKF--YECP-VQ-A--------GFPLDELFLKEAKAHNMIQLKG--H----- 576 (621)
Q Consensus 521 -----g~~~~~~~~~~ka~~lY~~id~~~~~--~~~~-v~-~--------~~~~~~~~~~~~~~~~i~~~~g--~----- 576 (621)
+++.+.++..+-++.+++.+.+.+++ +... .. . ......++.+.++++||+.-.| +
T Consensus 286 ~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~ 365 (397)
T TIGR01976 286 ERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHGLPPQRVVRRLADQGIDAWAGHFYAVRLL 365 (397)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCCcCHHHHHHHHHHCCeEEEeCccchHHHH
Confidence 37888888899999999998765432 1110 00 0 0012345888899999997765 1
Q ss_pred ------CCCCccceeeccCCCHHHHHHHHHHH
Q psy8733 577 ------RLVGGIRASIYNAITVDEAVILVKFM 602 (621)
Q Consensus 577 ------~~~~~~r~~~~~a~~~~~~~~l~~~~ 602 (621)
...+.||+|.-.-+|.||++.|++.|
T Consensus 366 ~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 366 RRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred HHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 12456999999999999999998753
No 378
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=93.41 E-value=0.14 Score=55.32 Aligned_cols=153 Identities=13% Similarity=0.059 Sum_probs=110.8
Q ss_pred hHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 448 FFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 448 ~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
..|++.+|.+|-+||.|++++++|+.+. .-|.+..... .......|||+..++.++..|+++.+ +++.+.+
T Consensus 192 ~~D~~~~s~~K~~gp~G~g~l~vr~~~~-----~~p~~~g~~~--~~~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~ 262 (382)
T TIGR03403 192 GVDFLSFSAHKFHGPKGVGGLYIRKGVE-----LTPLFHGGEH--MGGRRSGTLNVPYIVAMGEAMRLANE--YLDFEKS 262 (382)
T ss_pred CCCEEEEcchhhCCCCceEEEEECCCCC-----CCCcccCCCC--CCCcccCCcChHHHHHHHHHHHHHHH--hHHHHHH
Confidence 4688889999988999999999998751 2232211111 12234589999999999999998876 4888999
Q ss_pred HHHHHHHHHHHHHhccCCcccc-cCC---CC-------CcccHHHHHHHHHccCccccCCC-------------------
Q psy8733 528 NSLQKSVLLYQEIDNSDKFYEC-PVQ---AG-------FPLDELFLKEAKAHNMIQLKGHR------------------- 577 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~~~~~~-~v~---~~-------~~~~~~~~~~~~~~~i~~~~g~~------------------- 577 (621)
+.++-.+.+++.+.+.+++... +.+ +. ..-...+.+.+.++||....|..
T Consensus 263 ~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~ 342 (382)
T TIGR03403 263 HVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADK 342 (382)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCCCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCCh
Confidence 9999999999999765432111 111 00 00234466778899999876631
Q ss_pred --CCCccceeeccCCCHHHHHHHHHHHHHHHHHc
Q psy8733 578 --LVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609 (621)
Q Consensus 578 --~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~ 609 (621)
..+.||+|.-.-.|.||+++|++.|++..++-
T Consensus 343 ~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~ 376 (382)
T TIGR03403 343 ELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRL 376 (382)
T ss_pred HHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 12569999999999999999999999887653
No 379
>KOG1401|consensus
Probab=93.25 E-value=6.5 Score=43.39 Aligned_cols=111 Identities=21% Similarity=0.217 Sum_probs=64.4
Q ss_pred cccCCCcEEEecccccCCCcccc--cc-cce--EEeccccccC-CCccEEEEEchhHHhhhCCCCCceeeccccccCCCc
Q psy8733 294 PDSQGIPLVSDMSSNFLSRKFDV--SK-FGV--IIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINADNNSV 367 (621)
Q Consensus 294 ~~~~g~llvvDavSs~G~~pIDv--~~-~gv--l~asaqK~lG-P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~ 367 (621)
+++.|++||-|=+|.=.++-=+. .+ +++ =.++.-|.|| --=+|...++++..+.+.+..+ + -++++
T Consensus 236 C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t~aK~L~gGlPigA~~v~~kV~~~i~~~~~-l-------~hg~T 307 (433)
T KOG1401|consen 236 CDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDITTVAKPLGGGLPIGATGVRDKVAEMISPGDH-L-------YHGGT 307 (433)
T ss_pred HhhcCceEEeehhhhCccccchHHHHHHhCcCCcceeehhhccCCceeEEEeehHHHHhhcCCCCc-c-------ccCcc
Confidence 46889999999999732221111 01 110 0234458782 2227888999999887765444 1 12455
Q ss_pred cCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 368 YNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 368 ~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
|+--| .+..+...+++|+.+-+-+.++.+..+.+.+.+++.+.+.
T Consensus 308 f~gnp-Lacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e~~~~~ 352 (433)
T KOG1401|consen 308 FSGNP-LACSAGIKVLDELKDPETLKNVSKIGKELRKLLDEYLKKT 352 (433)
T ss_pred cCCCh-hhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 53222 2334456688888765335666666666666666665543
No 380
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=93.24 E-value=2.2 Score=47.18 Aligned_cols=127 Identities=14% Similarity=0.194 Sum_probs=75.2
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccc--cCCCcccccccceEEeccccccC--CCccEEEEE-c
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSN--FLSRKFDVSKFGVIIAGAQKNIG--PAGITVVIV-R 341 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs--~G~~pIDv~~~gvl~asaqK~lG--P~Glg~liv-r 341 (621)
++|++|++=.-.|++--+.|+ +++++|+++|||-+=+ +...|+++- .|+++-|+=|.+| --=++.+++ +
T Consensus 148 ~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~PL~~G-aDIVvhSaTKyl~GHsDvl~G~v~~~ 226 (396)
T COG0626 148 PNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQRPLELG-ADIVVHSATKYLGGHSDVLGGVVLTP 226 (396)
T ss_pred cCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccccccChhhcC-CCEEEEeccccccCCcceeeeEEecC
Confidence 589999887777777777775 3457889999998633 344555543 3599999999994 223444444 4
Q ss_pred hh-HHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 342 ED-LLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 342 ~~-ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
++ +++.+. +.+ +..+-..+..+..+.+...++ -+.-+.+++.+.+..+-+.|.+.+.+
T Consensus 227 ~~~~~~~~~------~~~-----~~~~G~~l~p~dA~l~lRGlk------TL~~Rm~~~~~nA~~IA~~L~~~p~V 285 (396)
T COG0626 227 NEELYELLF------FAQ-----RANTGAVLSPFDAWLLLRGLR------TLALRMERHNENALKIAEFLADHPKV 285 (396)
T ss_pred hHHHHHHHH------HHH-----HhhcCCCCCHHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 44 443321 000 001112333333333222222 25566677777788888888887644
No 381
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=92.67 E-value=12 Score=41.45 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=69.0
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC--cccccccc--eEEeccccccCCCc--c
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR--KFDVSKFG--VIIAGAQKNIGPAG--I 335 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~--pIDv~~~g--vl~asaqK~lGP~G--l 335 (621)
++.++|.+-..-...|...+- +++++|+++|.|=+++ +|.. ..-++.++ .-+.+-=|.+|| | +
T Consensus 198 ~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~-G~ri 276 (425)
T PRK08088 198 EDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAG-GFPL 276 (425)
T ss_pred CceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCEEEEeccccC-CCcc
Confidence 345555544444444544431 3568999999999877 3221 11122222 113455699973 4 7
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
|.++.++++.+.+... ....++.++ .....+..++|+.+... .+.++.+++.+++++.|.++
T Consensus 277 g~v~~~~~~~~~~~~~-----------~~~~t~~~~-~~~~~a~~~~l~~~~~~----~~~~~~~~~~~~~~~~l~~l 338 (425)
T PRK08088 277 AGVTGRAEVMDAIAPG-----------GLGGTYAGN-PIACAAALAVLKVFEQE----NLLQKANALGEKLKDGLLAI 338 (425)
T ss_pred eeeEecHHHHhhcCCC-----------CCCCCCCcC-HHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHH
Confidence 9999999987655321 122344443 34566666677766443 34445555556666666543
No 382
>PRK06149 hypothetical protein; Provisional
Probab=92.66 E-value=6.7 Score=48.37 Aligned_cols=104 Identities=14% Similarity=0.150 Sum_probs=65.0
Q ss_pred ccccCCCcEEEeccc-ccCCCc--c-ccccc----ceEEeccccccC-CCccEEEEEchhHHhhhCCCCCceeecccccc
Q psy8733 293 IPDSQGIPLVSDMSS-NFLSRK--F-DVSKF----GVIIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINAD 363 (621)
Q Consensus 293 i~~~~g~llvvDavS-s~G~~p--I-Dv~~~----gvl~asaqK~lG-P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~ 363 (621)
+++++|+++|+|=+| ++|..= + -.+.+ |+++. =|.+| ---+|.++.++++.+.+.+. . +
T Consensus 773 lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~--gK~lg~G~Pl~av~~~~~i~~~~~~~-~-~-------- 840 (972)
T PRK06149 773 AVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITM--AKGMGNGHPLGAVITRREIAEALEAE-G-Y-------- 840 (972)
T ss_pred HHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEe--cccccCCeeeEEEEEcHHHHhhhccC-C-c--------
Confidence 456899999999999 454321 1 11223 35655 48884 11279999999987654321 1 1
Q ss_pred CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 364 NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 364 ~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
..++++- |..+..+..++|+.+.++ ++.++.+++.++|++.|.++
T Consensus 841 ~~sT~~g-nP~~~aaala~L~~i~~e----~l~~~~~~~G~~l~~~L~~l 885 (972)
T PRK06149 841 FFSSTGG-SPVSCRIGMAVLDVLREE----KLQENARRVGDHLKARLEAL 885 (972)
T ss_pred ccCCCCC-CHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHH
Confidence 1133433 334455666789999876 45667777888888888765
No 383
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=92.59 E-value=4.2 Score=45.33 Aligned_cols=122 Identities=13% Similarity=0.089 Sum_probs=70.8
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-----------cCCCcccccccceEEeccccccC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-----------FLSRKFDVSKFGVIIAGAQKNIG 331 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-----------~G~~pIDv~~~gvl~asaqK~lG 331 (621)
++..+|.+=..-.--|++.|. +++++|+++|.|=+=+ .-...-|+ ++--|.+|
T Consensus 199 ~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDl-------ttlGKiIG 271 (432)
T COG0001 199 DDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPDL-------TTLGKIIG 271 (432)
T ss_pred CcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcch-------hhhhhhhc
Confidence 456666655555555676663 4568999999996532 22222222 22236662
Q ss_pred -CCccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 332 -PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 332 -P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
--=+|.+-.|++.++...|..|.|. .+++.- |...+.+-.++|+.+.+..| ..++..+++++|++.|
T Consensus 272 GGlP~ga~gGr~eiM~~~~p~g~vyq--------aGT~sg-nplamaAG~atl~~l~~~~~---~y~~l~~~~~~L~~gl 339 (432)
T COG0001 272 GGLPIGAFGGRAEIMEQLAPLGPVYQ--------AGTLSG-NPLAMAAGLATLEELMTEEG---VYERLDALGERLAEGL 339 (432)
T ss_pred CCcceeeeccHHHHHhhhCCCCCccc--------cCCCCC-cHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHH
Confidence 1116788889999987766554432 223321 22455666677888876423 5566666666666666
Q ss_pred Hc
Q psy8733 411 DN 412 (621)
Q Consensus 411 ~~ 412 (621)
++
T Consensus 340 ~~ 341 (432)
T COG0001 340 RA 341 (432)
T ss_pred HH
Confidence 55
No 384
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=92.30 E-value=10 Score=42.37 Aligned_cols=128 Identities=15% Similarity=0.179 Sum_probs=75.2
Q ss_pred CCceEEEEecc-cccccccccc---------ccccCCCcEEEecccc-cCC--Cccccccc----ceEEecccccc--C-
Q psy8733 272 PEASYLYYCDN-ETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKF----GVIIAGAQKNI--G- 331 (621)
Q Consensus 272 ~~t~~V~~thn-ET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~----gvl~asaqK~l--G- 331 (621)
++..+|.+-.. ....|+..|- +++++|+++|+|=+++ +|- .-+-.+.+ |++++ -|.+ |
T Consensus 205 ~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~--gK~l~gG~ 282 (429)
T PRK06173 205 DEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPDIMCI--GKALTGGY 282 (429)
T ss_pred CcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCCCCCEEEe--ehhhhCCc
Confidence 35566655543 4445776542 4568999999999974 321 11112223 35554 5888 3
Q ss_pred CCccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 332 P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
+| ++.++.++++.+.+.+.... .....+++. .|.....+..++|+.+.++ + +.++.+++.++|++.|.
T Consensus 283 ~p-~~a~~~~~~i~~~~~~~~~~------~~~~~~T~~-g~p~~~aaa~a~l~~i~~~-~---~~~~~~~~g~~l~~~L~ 350 (429)
T PRK06173 283 LT-LSATITTEAIAQTICSGEAK------CFMHGPTFM-ANPLACAIAAESIRLLLES-P---WQQNIQRIEAQLKQELA 350 (429)
T ss_pred cc-cceEEecHHHHHHHhcCCCC------ccccCCCCC-cCHHHHHHHHHHHHHHHhC-C---HHHHHHHHHHHHHHHHH
Confidence 33 57778888887654321000 001123443 3455667778889999876 3 36677778888888887
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
++
T Consensus 351 ~~ 352 (429)
T PRK06173 351 PA 352 (429)
T ss_pred Hh
Confidence 64
No 385
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=92.15 E-value=3.4 Score=46.58 Aligned_cols=121 Identities=20% Similarity=0.280 Sum_probs=72.5
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccC--CCc
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIG--PAG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lG--P~G 334 (621)
++.+|.+-......|+..|- +++++|+++|+|=+|+ +|- .-.-.+.+| +++.| |.+| -|
T Consensus 231 ~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~g--KglggG~P- 307 (464)
T PRK06938 231 LPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLS--KAIGGSLP- 307 (464)
T ss_pred ceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEee--ccccCCCc-
Confidence 35555544333444666542 4568999999999987 431 111223333 66664 8883 22
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++ +... +. ...++++.-|+ +..+..++|+.+.++ ++.++.+++.++|.+.|+++
T Consensus 308 lsAv~~~~~~-~~~~---~~--------~~~~T~~gnpl-a~Aaa~a~L~~l~~~----~l~~~~~~~G~~l~~~L~~l 369 (464)
T PRK06938 308 LAVVVYREWL-DTWQ---PG--------AHAGTFRGNQM-AMAAGSATLRYIKEH----RLAEHAAAMGERLREHLRQL 369 (464)
T ss_pred eEEEeehhHh-hccC---CC--------CCCCCCCcCHH-HHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHH
Confidence 7888888774 3221 11 12456654444 466667789998775 45667777788888888764
No 386
>PRK02948 cysteine desulfurase; Provisional
Probab=92.13 E-value=0.23 Score=53.59 Aligned_cols=155 Identities=11% Similarity=0.037 Sum_probs=109.3
Q ss_pred hHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 448 FFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 448 ~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
..|++..|.+|-+||.|++++++++++. +.+... ... ......+.|||+..++.+...|+++.+ +++...+
T Consensus 190 ~~d~~~~s~~K~~gp~G~G~l~~~~~~~-----~~~~~~-~~~-~~~~~~~~t~~~~~~~a~~~al~~~~~--~~~~~~~ 260 (381)
T PRK02948 190 GIDSLSVSAHKIYGPKGVGAVYINPQVR-----WKPVFP-GTT-HEKGFRPGTVNVPGIAAFLTAAENILK--NMQEESL 260 (381)
T ss_pred CCCEEEecHHhcCCCCcEEEEEEcCCCC-----CCCccc-CCC-CCCCcCCCCccHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 3678889999999999999999998751 111000 001 122345679999999999999999864 4788889
Q ss_pred HHHHHHHHHHHHHhccC-Ccccc----cCCCC------Cc-ccHHHHHHHHHccCccccCCC------------------
Q psy8733 528 NSLQKSVLLYQEIDNSD-KFYEC----PVQAG------FP-LDELFLKEAKAHNMIQLKGHR------------------ 577 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~-~~~~~----~v~~~------~~-~~~~~~~~~~~~~i~~~~g~~------------------ 577 (621)
+..+..+.+++.+.+.. ..+.. .+-+. .. -..++...++++||....|..
T Consensus 261 ~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~ 340 (381)
T PRK02948 261 RFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKGIEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKT 340 (381)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEeCCCCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCC
Confidence 99999999999998653 11100 00000 01 124467778889999776542
Q ss_pred ---CCCccceeeccCCCHHHHHHHHHHHHHHHHHcCC
Q psy8733 578 ---LVGGIRASIYNAITVDEAVILVKFMKEFRHKHSR 611 (621)
Q Consensus 578 ---~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~~~ 611 (621)
..+.||+|.-.-+|.||+++|++.|++..++.-|
T Consensus 341 ~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 377 (381)
T PRK02948 341 YEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQFYR 377 (381)
T ss_pred hHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 1356999999999999999999999988765433
No 387
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=91.87 E-value=7 Score=43.54 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=67.0
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCCc-c-ccccc----ceEEeccccccCCCcc
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSRK-F-DVSKF----GVIIAGAQKNIGPAGI 335 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~p-I-Dv~~~----gvl~asaqK~lGP~Gl 335 (621)
.++.+|.+-......|++.+- +++++|+++|+|-+|+ +|..- . -.+.+ |+++.| |.+ ++.
T Consensus 217 ~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~g--K~~--~~~ 292 (431)
T TIGR03251 217 HDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFG--KKT--QVC 292 (431)
T ss_pred CcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEEec--ccC--ccc
Confidence 567777777666667877642 4568999999999988 54431 0 11222 356554 333 333
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
|++ .++++.+.+.. .+.+.. ...++++ .|....++..++|+.+.+. ++ .++.+++.++|.+.|.+
T Consensus 293 g~~-~~~~i~~~~~~----~~~~~~--~~~~T~~-gnpl~~aaa~a~L~~l~~~-~l---~~~~~~~g~~l~~~L~~ 357 (431)
T TIGR03251 293 GIM-AGRRVDEVADN----VFAVPS--RLNSTWG-GNLVDMVRATRILEIIEEE-RL---VDNARVQGAHLLARLHE 357 (431)
T ss_pred eEE-ecchHHHhhhh----cccCcc--ccCCCCC-CCHHHHHHHHHHHHHHHhc-CH---HHHHHHHHHHHHHHHHH
Confidence 444 44443221110 011111 1234543 3445567778899999876 43 33344445555555544
No 388
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=91.63 E-value=0.44 Score=52.15 Aligned_cols=154 Identities=16% Similarity=0.106 Sum_probs=102.1
Q ss_pred hHHHHHhhccccc-ccCCcEEeeecHhHhhhcCCCCCceeeeee-----------cccCCCccCCCchhHHHHHHHHHHH
Q psy8733 448 FFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTVFHFKI-----------NADNNSVYNTPPTFVVHVIQRVFAW 515 (621)
Q Consensus 448 ~~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~-----------~~~~~s~~nTP~~~~iy~~~~vl~~ 515 (621)
..|.+.+|++|-+ ||.| +.+.++++.++...+.++....... .....-...|||+..++-+...|++
T Consensus 223 gvD~~~~s~hK~l~g~pG-~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~ 301 (406)
T TIGR01814 223 GVDFACWCTYKYLNAGPG-AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDI 301 (406)
T ss_pred CCCEEEEcCccccCCCCC-eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHH
Confidence 4688889999987 4659 7777777665443332222110000 0011112469999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHhcc----CCc--cccc--CCCC------Cc-ccHHHHHHHHHccCccccCCCCCC
Q psy8733 516 IKRQGGLAKMEQNSLQKSVLLYQEIDNS----DKF--YECP--VQAG------FP-LDELFLKEAKAHNMIQLKGHRLVG 580 (621)
Q Consensus 516 ~~~~gg~~~~~~~~~~ka~~lY~~id~~----~~~--~~~~--v~~~------~~-~~~~~~~~~~~~~i~~~~g~~~~~ 580 (621)
+++. |++.++++..+-++.+.+.+++. +++ +.+. .... .+ -...+.+.+.++||+... +..+
T Consensus 302 ~~~~-g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~~~~~~~~~~L~~~gi~v~~--~~~~ 378 (406)
T TIGR01814 302 FDQA-GMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHPVPGKAVFQALIKRGVIGDK--REPS 378 (406)
T ss_pred HHhc-CHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEecCCHHHHHHHHHHCCEEEec--cCCC
Confidence 9877 48999999999999999888663 122 2110 0010 01 124577888899998642 3336
Q ss_pred ccceeec-cCCCHHHHHHHHHHHHHH
Q psy8733 581 GIRASIY-NAITVDEAVILVKFMKEF 605 (621)
Q Consensus 581 ~~r~~~~-~a~~~~~~~~l~~~~~~~ 605 (621)
.||+|.- --.|.||++.|++.|++.
T Consensus 379 ~iRiS~~~~~nt~~did~l~~~l~~~ 404 (406)
T TIGR01814 379 VIRVAPVPLYNTFVDVYDAVNVLEEI 404 (406)
T ss_pred eEEEechhccCCHHHHHHHHHHHHHH
Confidence 8999974 467999999999999865
No 389
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=91.39 E-value=0.52 Score=50.10 Aligned_cols=132 Identities=12% Similarity=0.002 Sum_probs=82.0
Q ss_pred HHHhhcccccccCCc--EEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 451 VIIAGAQKNIGPAGI--TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 451 ~~~a~~qk~~GpaGl--~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
++..|.-|.+|++|+ +.+++++++++...... + ..+++.++-+++-..++ +.+-++.+.++
T Consensus 187 i~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~~~~-------------~-~~~~s~~~q~~~~~~l~---~~~~~~~~~~~ 249 (330)
T TIGR01140 187 VVLRSLTKFFGLAGLRLGFVVAHPALLARLREAL-------------G-PWTVNGPARAAGRAALA---DTAWQAATRAR 249 (330)
T ss_pred EEEEecchhhcCchhhhhheeCCHHHHHHHHhcC-------------C-CCCchHHHHHHHHHHHh---chHHHHHHHHH
Confidence 445677899997775 89999999887643211 1 12455666555544443 33334677889
Q ss_pred HHHHHHHHHHHHhccCCcccccCCC-----CCcccHHHHHHHHHccCccccCCCC----CCccceeeccCCCHHHHHHHH
Q psy8733 529 SLQKSVLLYQEIDNSDKFYECPVQA-----GFPLDELFLKEAKAHNMIQLKGHRL----VGGIRASIYNAITVDEAVILV 599 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~~v~~-----~~~~~~~~~~~~~~~~i~~~~g~~~----~~~~r~~~~~a~~~~~~~~l~ 599 (621)
.+++.+.+.+.+++.+.+-..+-.. ...-..+|.+.++++||....|... .+.||++...-. ++ +.|+
T Consensus 250 ~~~~~~~l~~~L~~~~~~~~~~~~~~f~~~~~~~~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~~~~--~~-~~~~ 326 (330)
T TIGR01140 250 LAAERARLAALLARLGGLEVVGGTALFLLVRTPDAAALHEALARRGILIRDFDNFPGLDPRYLRFALPTDE--EN-DRLE 326 (330)
T ss_pred HHHHHHHHHHHHHhCCCceECCCCCeEEEEEcCCHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEecCHH--HH-HHHH
Confidence 9999999999998875321111000 0112356889999999997666532 356999875422 44 6555
Q ss_pred HHH
Q psy8733 600 KFM 602 (621)
Q Consensus 600 ~~~ 602 (621)
+-|
T Consensus 327 ~~l 329 (330)
T TIGR01140 327 EAL 329 (330)
T ss_pred Hhh
Confidence 543
No 390
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=91.12 E-value=29 Score=38.63 Aligned_cols=128 Identities=10% Similarity=0.113 Sum_probs=74.6
Q ss_pred CceEEEEecc-cccccccccc---------ccccCCCcEEEecccc-cCCC--ccccccc----ceEEeccccccC--CC
Q psy8733 273 EASYLYYCDN-ETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR--KFDVSKF----GVIIAGAQKNIG--PA 333 (621)
Q Consensus 273 ~t~~V~~thn-ET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~--pIDv~~~----gvl~asaqK~lG--P~ 333 (621)
+..+|.+-.. ....|+..+- +++++|+++|+|=++. +|-. .+-.+.+ |+++. -|.+| -.
T Consensus 207 ~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~~--gK~l~gG~~ 284 (427)
T TIGR00508 207 EIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPDILCV--GKALTGGYM 284 (427)
T ss_pred cEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCCEEEe--chhhhcCcc
Confidence 4455554443 3444565541 4568999999999973 3211 1111222 34544 58883 22
Q ss_pred ccEEEEEchhHHhhhCCCC-CceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 334 GITVVIVREDLLEYALPIT-PTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~-P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
=++.+..++++.+.+.... +.+. ..+++.. |.....+..++|+.+.+. . +.++.+++.++|++.|.+
T Consensus 285 p~~a~~~~~~~~~~~~~~~~~~~~-------~~~T~~g-~p~~~aaa~a~l~~l~~~-~---~~~~~~~~~~~l~~~L~~ 352 (427)
T TIGR00508 285 TLSATVTTDKVAQTISSGEAGCFM-------HGPTFMG-NPLACAVAEASLAILLEG-E---WQKQVSAIENQLKRELSP 352 (427)
T ss_pred cceEEEEcHHHHHHHhcCCCCccc-------cCCCCCc-CHHHHHHHHHHHHHHHhC-C---HHHHHHHHHHHHHHHHHH
Confidence 2577888888876654211 1110 1233433 455667777789988765 3 357788888899998887
Q ss_pred cC
Q psy8733 413 SD 414 (621)
Q Consensus 413 ~~ 414 (621)
+.
T Consensus 353 l~ 354 (427)
T TIGR00508 353 LR 354 (427)
T ss_pred hh
Confidence 64
No 391
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=90.99 E-value=16 Score=40.59 Aligned_cols=129 Identities=10% Similarity=0.111 Sum_probs=74.6
Q ss_pred CCceEEEEecc-cccccccccc---------ccccCCCcEEEecccccCCCccc---ccccc----eEEecccccc-C--
Q psy8733 272 PEASYLYYCDN-ETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSRKFD---VSKFG----VIIAGAQKNI-G-- 331 (621)
Q Consensus 272 ~~t~~V~~thn-ET~tGv~~p~---------i~~~~g~llvvDavSs~G~~pID---v~~~g----vl~asaqK~l-G-- 331 (621)
+++.+|.+-.. .-..|+..|- +++++|+++|+|=+++=..+.=. .+.+| +++. -|.+ |
T Consensus 199 ~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t~--gK~l~gG~ 276 (422)
T PRK05630 199 ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMCV--GKALTGGF 276 (422)
T ss_pred hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCCCeeee--echhhcCc
Confidence 34555554432 3335776552 45689999999999752222211 22333 4544 5888 3
Q ss_pred CCccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 332 P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
+| +|.+..++++.+.+...... ......++|. -|.....+..++|+.+.++ + ..++.+++.++|++.|.
T Consensus 277 ~p-~~av~~~~~i~~~~~~~~~~-----~~~~h~~T~~-g~Pla~aaa~aaL~~l~~~-~---~~~~~~~~g~~l~~~L~ 345 (422)
T PRK05630 277 MS-FAATLCTDKVAQLISTPNGG-----GALMHGPTFM-ANPLACAVAHASLEIIETG-M---WRKQVKRIEAELIAGLS 345 (422)
T ss_pred cc-cceeeccHHHHHHHhccCCC-----CccccCCCCc-CCHHHHHHHHHHHHHHHhC-c---HHHHHHHHHHHHHHHHH
Confidence 45 57777888887655321000 0011234554 4445666677789999875 3 34577777888888777
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
.+
T Consensus 346 ~l 347 (422)
T PRK05630 346 PL 347 (422)
T ss_pred Hh
Confidence 53
No 392
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=90.75 E-value=9.4 Score=42.89 Aligned_cols=113 Identities=14% Similarity=0.214 Sum_probs=71.2
Q ss_pred ccccccc---------ccccCCCcEEEecccc-cCC--Ccccccccc----eEEecccccc--CCCccEEEEEchhHHhh
Q psy8733 286 DGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNI--GPAGITVVIVREDLLEY 347 (621)
Q Consensus 286 tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~l--GP~Glg~livr~~ll~~ 347 (621)
.|++.|- +++++|+++|+|=+-+ ||- ..+-.+.+| +++.+ |.| |--=+|.+++++++.+.
T Consensus 228 gG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~a--KGLT~GY~Pl~a~l~~~~I~~~ 305 (449)
T COG0161 228 GGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILCLA--KGLTGGYLPLSAVLTSDRIYEA 305 (449)
T ss_pred CCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeeeec--ccccccchhhHhHhhhHHHHHH
Confidence 6777762 5678999999997644 331 223334443 55554 888 43337888899999876
Q ss_pred hCCC-CCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 348 ALPI-TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 348 ~~~~-~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+... ...+ -++.+| |-+..+..+..+.|+.++++ .+.++.+++..+|.+.|.+
T Consensus 306 ~~~~~~~~f-------~HG~TY-sghPlacAaAla~L~i~e~e----~l~~~~~~~~~~l~~~L~~ 359 (449)
T COG0161 306 FSDGDAGAF-------MHGHTY-SGNPLACAAALANLDILEEE----DLLERVAEIGAYLQAGLQA 359 (449)
T ss_pred HhcccCCee-------ccCCcc-ccCHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHH
Confidence 5432 1111 123444 33334455556788988876 4556677888888888886
No 393
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=89.77 E-value=0.56 Score=50.59 Aligned_cols=155 Identities=12% Similarity=0.074 Sum_probs=110.0
Q ss_pred hHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 448 FFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 448 ~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
..|++.+|+||-+||.|++++.+|++.. ..|.+.. .. ........|||+.+|+-+...++++.+ +++.+++
T Consensus 188 ~~D~~~~s~~K~~gp~G~g~l~v~~~~~-----~~p~~~g-~~-~~~~~~~gt~~~~~~~~l~~al~~~~~--~~~~~~~ 258 (379)
T TIGR03402 188 NIDMLSLSGHKLHGPKGVGALYIRKGTR-----FRPLLRG-GH-QERGRRAGTENVPGIVGLGKAAELATE--HLEEENT 258 (379)
T ss_pred CCCEEEEcHHHcCCCCceEEEEECCCCC-----CCCcccC-Cc-cCCCcCCCCccHHHHHHHHHHHHHHHH--hHHHHHH
Confidence 4688889999977899999999998752 2233321 11 112234679999999999999999875 4788888
Q ss_pred HHHHHHHHHHHHHhc-cCCc--ccccCCC--C-------CcccHHHHHHHHHccCccccCCC------------------
Q psy8733 528 NSLQKSVLLYQEIDN-SDKF--YECPVQA--G-------FPLDELFLKEAKAHNMIQLKGHR------------------ 577 (621)
Q Consensus 528 ~~~~ka~~lY~~id~-~~~~--~~~~v~~--~-------~~~~~~~~~~~~~~~i~~~~g~~------------------ 577 (621)
+.++-.+.+.+.+.+ -+++ +..+-.. + ..-..+|.+.++++||....|+.
T Consensus 259 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~ 338 (379)
T TIGR03402 259 RVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVP 338 (379)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCCHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCC
Confidence 888888888888764 3321 1111001 0 01234588888899999776641
Q ss_pred ---CCCccceeeccCCCHHHHHHHHHHHHHHHHHcCC
Q psy8733 578 ---LVGGIRASIYNAITVDEAVILVKFMKEFRHKHSR 611 (621)
Q Consensus 578 ---~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~~~ 611 (621)
..|.+|+|.-.-.|.||+++|++.|++..++...
T Consensus 339 ~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~~ 375 (379)
T TIGR03402 339 HTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLRA 375 (379)
T ss_pred hhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1367999999999999999999999998776543
No 394
>PRK02769 histidine decarboxylase; Provisional
Probab=89.70 E-value=2.9 Score=45.87 Aligned_cols=141 Identities=11% Similarity=0.069 Sum_probs=97.6
Q ss_pred hHHHHHhhcccccc-cCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHH
Q psy8733 448 FFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKME 526 (621)
Q Consensus 448 ~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~ 526 (621)
..|.+-+++-|-+| |-|.+++++|++.++...+. -+|-. .......-|+|.+++.-+...|+++... |.+++.
T Consensus 221 ~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~----~~yl~-~~d~t~~GSR~g~~~l~lw~aL~~lg~~-G~~~~~ 294 (380)
T PRK02769 221 GIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVD----VDYIG-SRDQTISGSRNGHTALLLWAAIRSLGSK-GLRQRV 294 (380)
T ss_pred CCCEEEECCcccCCCCCCcEEEEEehhhhhhcccC----ccccC-CCCCCccCCCCcHHHHHHHHHHHHHCHH-HHHHHH
Confidence 35778889999888 99999999999988764332 22322 2233567799999999999999998765 599999
Q ss_pred HHHHHHHHHHHHHHhccCCcccccCCCCC-----c-ccHHHHHHHHHccCccccCCCC---CCccceeeccCCCHHHHHH
Q psy8733 527 QNSLQKSVLLYQEIDNSDKFYECPVQAGF-----P-LDELFLKEAKAHNMIQLKGHRL---VGGIRASIYNAITVDEAVI 597 (621)
Q Consensus 527 ~~~~~ka~~lY~~id~~~~~~~~~v~~~~-----~-~~~~~~~~~~~~~i~~~~g~~~---~~~~r~~~~~a~~~~~~~~ 597 (621)
++..+.++.+++.|++. ++ ....++.. + .+..+. +||.. .+.+|+.+-|-++.|.++.
T Consensus 295 ~~~~~la~~l~~~L~~~-g~-~~~~~p~~~~v~f~~~~~~~~-----------~~w~l~~~~~~~hi~~~~~~~~~~~~~ 361 (380)
T PRK02769 295 QHCLDMAQYAVDRLQAN-GI-PAWRNPNSITVVFPCPSERIW-----------KKWHLATSGNQAHIITMPHHNKQQIDS 361 (380)
T ss_pred HHHHHHHHHHHHHHHhC-CC-EEEcCCCceEEEEcCCCHHHH-----------hCeeEcccCCEEEEEECCCCCHHHHHH
Confidence 99999999999999774 32 22222211 1 111111 33322 3469999999999998876
Q ss_pred HHHHHHHHHH
Q psy8733 598 LVKFMKEFRH 607 (621)
Q Consensus 598 l~~~~~~~~~ 607 (621)
+++=|.....
T Consensus 362 f~~dl~~~~~ 371 (380)
T PRK02769 362 LIDELIFDLK 371 (380)
T ss_pred HHHHHHHHHh
Confidence 6655544433
No 395
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=89.57 E-value=4.2 Score=46.71 Aligned_cols=137 Identities=14% Similarity=0.108 Sum_probs=71.3
Q ss_pred CCCceEEEEecccccccccccc--cc---ccCCCcEEEecccccCC-----Cc-ccccc-cceEEeccccccC-CCccEE
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--IP---DSQGIPLVSDMSSNFLS-----RK-FDVSK-FGVIIAGAQKNIG-PAGITV 337 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--i~---~~~g~llvvDavSs~G~-----~p-IDv~~-~gvl~asaqK~lG-P~Glg~ 337 (621)
.++..-..+..|.|-.|+..+. +. ...++++.+|-.-.+-- .| -+++. -++++-|.||.+| -+=.+.
T Consensus 163 ~~~~~k~~vitnpTYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~~~~tqS~HK~l~alSQaS~ 242 (557)
T COG1982 163 HPDAEKLAVITNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNGGADFVTQSTHKLLAALSQASM 242 (557)
T ss_pred ChhhheeEEEecCccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhcCceEEEechhhhhhhhhhhHH
Confidence 3444134555677889999885 32 24567777775432211 11 11111 1288999999995 554555
Q ss_pred EEEchh-HHhhhCCCCCceeeccccccCCC--ccCCchHHHHHHHHHHHHHHHhhCCHHHH---HHHHHHHHHHHHHHHH
Q psy8733 338 VIVRED-LLEYALPITPTVFHFKINADNNS--VYNTPPTFVVHVIQRVFAWIKRQGGLAKM---EQNSLQKSVLLYQEID 411 (621)
Q Consensus 338 livr~~-ll~~~~~~~P~~ld~~~~~~~~s--~~~TP~v~~I~aL~~aL~~i~~~gGl~~i---~~r~~~la~~L~e~L~ 411 (621)
+-+++. .++ .....+.-. .-.+|+...+++|.. .+...+..|...+ .+...++.+.+++.+.
T Consensus 243 iHv~~~~~~~-----------~~r~nea~~~h~STSPsY~l~ASlD~-Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~ 310 (557)
T COG1982 243 IHVKDGRAVN-----------HERFNEALMMHQSTSPSYPLMASLDV-ARMQEGNAGRELWQEVIDEAIDFRKALRRLIN 310 (557)
T ss_pred HhhCCCccCC-----------HHHHHHHHHHHccCCchHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555542 110 000000000 112454555555555 3333333354332 5666777788888888
Q ss_pred ccCCcccC
Q psy8733 412 NSDKFYEC 419 (621)
Q Consensus 412 ~~~g~~~~ 419 (621)
++++|+..
T Consensus 311 ~~~~~~~~ 318 (557)
T COG1982 311 EIGFFPVL 318 (557)
T ss_pred hcCCeeec
Confidence 88866654
No 396
>PRK08361 aspartate aminotransferase; Provisional
Probab=89.36 E-value=0.79 Score=49.82 Aligned_cols=142 Identities=14% Similarity=0.161 Sum_probs=82.0
Q ss_pred HHHhhcccccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 451 VIIAGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 451 ~~~a~~qk~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
++..|..|.+|.+| ++.++.++++++... . .......++ +.+...++-..|+.-.....++.+.++
T Consensus 230 i~~~s~SK~~~~~GlRiG~~~~~~~~~~~~~----------~-~~~~~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~ 297 (391)
T PRK08361 230 ILANSFSKTFAMTGWRLGFVIAPEQVIKDMI----------K-LHAYIIGNV-ASFVQIAGIEALRSKESWKAVEEMRKE 297 (391)
T ss_pred EEEecCchhcCCcHhhhhhhccCHHHHHHHH----------H-HHhhhccCC-ChHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 45578899999889 888999988876531 1 111222333 344444433333211111247888899
Q ss_pred HHHHHHHHHHHHhccCC---------cccc-cCCCCCcccHHHHHHH-HHccCccccCC--CC--CCccceeeccCCCHH
Q psy8733 529 SLQKSVLLYQEIDNSDK---------FYEC-PVQAGFPLDELFLKEA-KAHNMIQLKGH--RL--VGGIRASIYNAITVD 593 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~---------~~~~-~v~~~~~~~~~~~~~~-~~~~i~~~~g~--~~--~~~~r~~~~~a~~~~ 593 (621)
.+++.+.+++.+.+.++ ||.. .+.+..--..+|.+.+ +++|+....|. +. .+.||++.= .+.+
T Consensus 298 ~~~~~~~~~~~L~~~~~~~~~~p~g~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~ 375 (391)
T PRK08361 298 YNERRKLVLKRLKEMPHIKVFEPKGAFYVFANIDETGMSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYA--TSKE 375 (391)
T ss_pred HHHHHHHHHHHHHhCCCCeecCCCEEEEEEEECCCCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEec--CCHH
Confidence 99999999999987532 2221 1111001234566665 56899866654 33 345999853 4666
Q ss_pred HHHHHHHHHHHHH
Q psy8733 594 EAVILVKFMKEFR 606 (621)
Q Consensus 594 ~~~~l~~~~~~~~ 606 (621)
+++.-++-|+++.
T Consensus 376 ~l~~al~~l~~~l 388 (391)
T PRK08361 376 KLIEAMERMEKAL 388 (391)
T ss_pred HHHHHHHHHHHHH
Confidence 6555555555443
No 397
>PRK07036 hypothetical protein; Provisional
Probab=89.21 E-value=3.5 Score=46.48 Aligned_cols=130 Identities=15% Similarity=0.099 Sum_probs=79.0
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC--ccccc-ccc----eEEeccccccC--C
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR--KFDVS-KFG----VIIAGAQKNIG--P 332 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~--pIDv~-~~g----vl~asaqK~lG--P 332 (621)
++..+|.+-......|+..|- +++++|+++|+|=+++ +|-. .+=.+ .+| +++. -|.+| -
T Consensus 219 ~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt~--gK~l~gG~ 296 (466)
T PRK07036 219 DNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPDIITF--AKGLTSGY 296 (466)
T ss_pred CceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEEE--ccccccCc
Confidence 345666655555555776662 4678999999999985 5431 22223 233 5555 48883 1
Q ss_pred CccEEEEEchhHHhhhCCC-CCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 333 AGITVVIVREDLLEYALPI-TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~-~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
-=+|.+..++++.+...+. .+.. ....+++++. +.....+..++|+.+.+. ++.++.+++.++|++.|.
T Consensus 297 ~Pi~av~~~~~i~~~~~~~~~~~~-----~~~~~~T~~g-npl~~aaa~a~Le~i~~~----~l~~~~~~~g~~l~~~L~ 366 (466)
T PRK07036 297 QPLGAVIISERLLDVISGPNAKGN-----VFTHGFTYSG-HPVACAAALKNIEIMERE----GLCEHVREVGPYFEERLA 366 (466)
T ss_pred cccEEEEEcHHHHHHHhcccCcCc-----ccccCCCCCC-CHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHH
Confidence 1178889999998765321 1110 0012345543 344567777889999765 356667777888888876
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
.+
T Consensus 367 ~l 368 (466)
T PRK07036 367 SL 368 (466)
T ss_pred Hh
Confidence 54
No 398
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=88.82 E-value=1.5 Score=48.70 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=75.4
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccccCCCc---ccccccc----eEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSNFLSRK---FDVSKFG----VIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs~G~~p---IDv~~~g----vl~asaqK~lGP~G- 334 (621)
+++.+|.+-..-..+|...| + +++++|+++|+|=+++ |.+- .-.+.++ ++.+ -|.+| .|
T Consensus 196 ~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-G~r~g~~~~~~~~~~~pDi~~~--gK~l~-~G~ 271 (426)
T PRK00062 196 DEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMT-GFRVALGGAQGYYGVTPDLTTL--GKIIG-GGL 271 (426)
T ss_pred CcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechh-ccccCCccHHHHhCCCcchHhh--hhHhh-CCC
Confidence 35667776666666788776 2 4568999999999986 2211 1011122 3333 48885 33
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+|.++.++++.+.+.+..+.+ ..++++ .+....++..++|+.+.+. ...++.+++.+++++.|.+
T Consensus 272 p~ga~~~~~~i~~~~~~~~~~~--------~~~T~~-~~p~~~aaa~a~L~~~~~~----~~~~~~~~~~~~~~~~l~~ 337 (426)
T PRK00062 272 PVGAFGGRREIMEQLAPLGPVY--------QAGTLS-GNPLAMAAGLATLKLLKEP----GFYEELEALTKRLAEGLKE 337 (426)
T ss_pred cceeeeEHHHHHHhhccCCCce--------ecccCc-CCHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHH
Confidence 678888998877653211111 112333 4455577778889988664 4556666677777777764
No 399
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=88.74 E-value=1.8 Score=46.11 Aligned_cols=126 Identities=21% Similarity=0.183 Sum_probs=76.8
Q ss_pred cccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy8733 458 KNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVL 535 (621)
Q Consensus 458 k~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ka~~ 535 (621)
|.+|.+| ++.++.++++++...+ .. . +++.+.++.+.+-. ++.+.+-++.+.++.+++.+.
T Consensus 223 K~~g~~GlRiG~~~~~~~~~~~~~~----------~~---~-~~~~~~~~~~~a~~---~l~~~~~~~~~~~~~~~~r~~ 285 (361)
T PRK00950 223 KVFGLAGLRIGYGFVPEWLIDYYMR----------AK---T-PFSLTRLSQAAAIA---ALSDKEYIEKSIEHGIKSREY 285 (361)
T ss_pred HhhcCchhhcchhcCCHHHHHHHHH----------hc---C-CCCCCHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHH
Confidence 6788777 6777888888765321 11 1 12244555554443 343434466677777777888
Q ss_pred HHHHHh----ccCCcc-cccCCCCCcccHHHHHHHHHccCccccC--CCC--CCccceeeccCCCHHHHHHHHHHHHHH
Q psy8733 536 LYQEID----NSDKFY-ECPVQAGFPLDELFLKEAKAHNMIQLKG--HRL--VGGIRASIYNAITVDEAVILVKFMKEF 605 (621)
Q Consensus 536 lY~~id----~~~~~~-~~~v~~~~~~~~~~~~~~~~~~i~~~~g--~~~--~~~~r~~~~~a~~~~~~~~l~~~~~~~ 605 (621)
+++.+. .+.++| -..++ .....+|.+.+.++|+....| |+. .+.||++.= +.++.++|++-|++.
T Consensus 286 l~~~l~~~~~~~~~~~i~~~~~--~~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~---~~~~~~~l~~~L~~i 359 (361)
T PRK00950 286 LYNELPFKVYPSEANFVLVDVT--PMTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG---TFEENERFLEILKEI 359 (361)
T ss_pred HHhhcCeeECCCcceEEEEECC--CCCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC---CHHHHHHHHHHHHHH
Confidence 888774 111222 22221 113466888889999886544 433 345999953 788999999988764
No 400
>KOG2142|consensus
Probab=88.22 E-value=0.54 Score=54.03 Aligned_cols=156 Identities=14% Similarity=0.052 Sum_probs=97.0
Q ss_pred CCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEchhHHhhhC-CCCCceeecccc------ccCCCc
Q psy8733 298 GIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVREDLLEYAL-PITPTVFHFKIN------ADNNSV 367 (621)
Q Consensus 298 g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~~ll~~~~-~~~P~~ld~~~~------~~~~s~ 367 (621)
+-..++|++|=.-+.|+|.+.+- +.-. -.|.+| |. |.|.+..+.-+..- .....++.|... .++...
T Consensus 194 ~~y~lldtaSrvSaf~Ldaesy~f~~~~~-lltiFgyet--gAvlv~~r~A~~~Ggkt~sa~f~wp~~~l~s~~lkkr~e 270 (728)
T KOG2142|consen 194 SEYVLLDTASRVSAFPLDAESYPFDFNPK-LLTIFGYET--GAVLVMNRSAELKGGKTASAEFSWPMLYLLSEKLKKRFE 270 (728)
T ss_pred ceEEEEEeecccccccchHhhCCCcccch-heeecCCCc--hhhHHHhhhhHhhcCccceeecccchHHHHHHHHHHHHh
Confidence 45678999998889999999864 5544 789999 77 44555544433221 111223333321 112233
Q ss_pred cCCchHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccccCCch
Q psy8733 368 YNTPPTFVVHVIQRVFAWIKRQ-GGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQTGSA 446 (621)
Q Consensus 368 ~~TP~v~~I~aL~~aL~~i~~~-gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~~~~~~ 446 (621)
.+|-+--.++++-.+++.+... ||+..+..+...++++.+..|++.. + .+.+.+.-+ .+.
T Consensus 271 ~gk~~~kd~a~gl~vFp~~sRvtG~~ysy~wmt~al~~~whvlLda~~-l--G~kdmd~yg----------------lS~ 331 (728)
T KOG2142|consen 271 DGKLRFKDIAQGLFVFPTQSRVTGGMYSYSWMTLALANNWHVLLDALA-L--GPKDMDSYG----------------LSL 331 (728)
T ss_pred hccccccchhhheeccchHhhhcccchhHHHHHHHHhhhHHHHHhhhc-c--CcchHhhhh----------------hhc
Confidence 4566666677777777777765 8999999999999999999999854 2 332211110 011
Q ss_pred hhHHHHHhhcccccc---cCCcEEeeecHhHh
Q psy8733 447 FFFGVIIAGAQKNIG---PAGITVVIVREDLL 475 (621)
Q Consensus 447 ~~~~~~~a~~qk~~G---paGl~v~iv~~~~l 475 (621)
+.-|.+-.+.=.|+| |+|.+...|.|.++
T Consensus 332 f~Pdfqg~sf~fv~g~d~psgfGcl~VkKs~i 363 (728)
T KOG2142|consen 332 FQPDFQGPSFYFVFGRDDPSGFGCLEVKKSAI 363 (728)
T ss_pred cCccceeeeEEEEeccCCCCceeeeeeehhhh
Confidence 112333334445676 77888888888885
No 401
>PRK07777 aminotransferase; Validated
Probab=88.11 E-value=2.1 Score=46.39 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=80.6
Q ss_pred HHHHhhcccccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 450 GVIIAGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 450 ~~~~a~~qk~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
+++..|..|.+|.+| ++.++.++++++.... ......++ ++...-+++...++.- +-=++.+.+
T Consensus 224 ~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~~~~-----------~~~~~~~~-~~~~~q~~~~~~l~~~--~~~~~~~~~ 289 (387)
T PRK07777 224 TVTISSAAKTFNVTGWKIGWACGPAPLIAAVRA-----------AKQYLTYV-GGAPFQPAVAHALDHE--DAWVAALRD 289 (387)
T ss_pred EEEEeechhhccCcCceeEEEecCHHHHHHHHH-----------HHhhcccC-CCCHHHHHHHHHHhCC--cHHHHHHHH
Confidence 456678899999778 4778888888765321 11111122 2222233333333210 112345677
Q ss_pred HHHHHHHHHHHHHhccC--------Ccccc-cCCC-CCcccHHHHHHH-HHccCccccCC--CC-----CCccceeeccC
Q psy8733 528 NSLQKSVLLYQEIDNSD--------KFYEC-PVQA-GFPLDELFLKEA-KAHNMIQLKGH--RL-----VGGIRASIYNA 589 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~--------~~~~~-~v~~-~~~~~~~~~~~~-~~~~i~~~~g~--~~-----~~~~r~~~~~a 589 (621)
..+++.+.+++.+++.. +||.. .+.+ ......+|.+.+ +++|+....|. +. .+.||++. +
T Consensus 290 ~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~--~ 367 (387)
T PRK07777 290 SLQAKRDRLAAGLAEAGFEVHDSAGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAF--C 367 (387)
T ss_pred HHHHHHHHHHHHHHhCCCCccCCCcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEe--c
Confidence 88899999999997642 33332 1111 111235677777 57899865553 32 34699986 3
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy8733 590 ITVDEAVILVKFMKEFR 606 (621)
Q Consensus 590 ~~~~~~~~l~~~~~~~~ 606 (621)
.+.|+++.-++.|++++
T Consensus 368 ~~~~~l~~~l~~l~~~~ 384 (387)
T PRK07777 368 KRDDTLDEAIRRLRALR 384 (387)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 47777777777776654
No 402
>PRK06148 hypothetical protein; Provisional
Probab=87.84 E-value=15 Score=45.48 Aligned_cols=123 Identities=14% Similarity=0.181 Sum_probs=74.7
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC---cccccccc----eEEeccccccC--CC
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR---KFDVSKFG----VIIAGAQKNIG--PA 333 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~---pIDv~~~g----vl~asaqK~lG--P~ 333 (621)
++.+|.+=..-...|++.+- +++++|+++|+|=+|+ +|-. -.-.+.+| +++. -|.+| -|
T Consensus 784 ~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~--gK~lggG~P 861 (1013)
T PRK06148 784 GPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTM--GKPIGNGHP 861 (1013)
T ss_pred ceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeee--cccccCCcc
Confidence 34444433333334565551 4568999999999985 5421 12223333 5555 48884 22
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+...+ . ....++|+-.|+. ..+..++|+.+.++ ++.++.+++.++|+++|+++
T Consensus 862 -lgav~~~~ei~~~~~~---g-------~~~~~Tf~gnpla-~aaa~a~L~~i~~e----~l~~~~~~~G~~l~~~L~~l 925 (1013)
T PRK06148 862 -MGAVVTTREIADSFDN---G-------MEYFNTFGGNPVS-CAIGLAVLDIIEDE----DLQRNALEIGNYLLAGLREL 925 (1013)
T ss_pred -eEEEEEcHHHHhhccC---C-------CccccCCCCCHHH-HHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHHHH
Confidence 8899999998765432 1 0113566544444 55556779999876 35566677778888888764
No 403
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=87.51 E-value=4.4 Score=45.29 Aligned_cols=123 Identities=10% Similarity=0.065 Sum_probs=70.1
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccccCCC---cccccccc----eEEeccccccC--CCc
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSR---KFDVSKFG----VIIAGAQKNIG--PAG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~~---pIDv~~~g----vl~asaqK~lG--P~G 334 (621)
+..+|.+-..-...|...|. +++++|+++|+|=+++ |.+ ..-.+.+| +++. -|.+| -|
T Consensus 201 ~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~R~G~~ga~~~~gv~PDi~~~--gK~lggG~p- 276 (433)
T PRK00615 201 RVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-GFRVAQGGAAAIYHVKPDITVY--GKILGGGLP- 276 (433)
T ss_pred ceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-cccccHhHHHHhcCCCCCeEEE--cccccCCcc-
Confidence 44555544444445666652 4568999999999984 321 11112232 5554 58884 23
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+|.+..++++.+.+.+..+.+ ..+++. .|.....+..++|+.+.++ + +.++.+++.+++.+.|++
T Consensus 277 ~~av~~~~~i~~~~~~~~~~~--------~~~T~~-g~p~~~aa~la~L~~i~~~-~---~~~~~~~~g~~l~~~l~~ 341 (433)
T PRK00615 277 AAAVVAHKSIMDHLAPEGTIF--------QAGTLS-GNPLAMAAGKASINLCREQ-G---FYTQLSTLEQNFLSPIEE 341 (433)
T ss_pred eeeeeecHHHHhhhcCCCCcc--------cCCCCc-ccHHHHHHHHHHHHHHhcc-c---HHHHHHHHHHHHHHHHHH
Confidence 778888999877653211100 123443 2334577778889988765 3 355555666666555554
No 404
>PLN02724 Molybdenum cofactor sulfurase
Probab=87.16 E-value=1.4 Score=53.03 Aligned_cols=159 Identities=13% Similarity=0.136 Sum_probs=110.5
Q ss_pred hhHHHHHhhcccccc-cCCcEEeeecHhHhhhcCCCCCc--eeeeee-------ccc---CCCccCCCchhHHHHHHHHH
Q psy8733 447 FFFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPITPT--VFHFKI-------NAD---NNSVYNTPPTFVVHVIQRVF 513 (621)
Q Consensus 447 ~~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~~p~--~~~y~~-------~~~---~~s~~nTP~~~~iy~~~~vl 513 (621)
...|.+.+|+-|=+| |.|+++.++|++++++-.+.... ...+.. ... ..=-.-|||+.+|.-+...|
T Consensus 251 ~~~Dfl~~S~HK~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal 330 (805)
T PLN02724 251 YPADFVVVSFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGF 330 (805)
T ss_pred cCCCEEEEecceeccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHH
Confidence 347889999999999 99999999999998653332110 111110 000 00012499999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHhccCC--------ccccc------CCC---------C---CcccHH-HHHHHH
Q psy8733 514 AWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK--------FYECP------VQA---------G---FPLDEL-FLKEAK 566 (621)
Q Consensus 514 ~~~~~~gg~~~~~~~~~~ka~~lY~~id~~~~--------~~~~~------v~~---------~---~~~~~~-~~~~~~ 566 (621)
+|+.+.| .+.++++..+=++.+++.|.+.+. +|-+. -.. + ..+... +.+.+.
T Consensus 331 ~~l~~ig-~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~ 409 (805)
T PLN02724 331 KLLNRLT-ISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLAS 409 (805)
T ss_pred HHHHHhC-hHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHH
Confidence 9998775 899999999999999999886541 45332 011 0 112222 445567
Q ss_pred HccCccccCCC-------------------------------------CCCccceeeccCCCHHHHHHHHHHHHHHH
Q psy8733 567 AHNMIQLKGHR-------------------------------------LVGGIRASIYNAITVDEAVILVKFMKEFR 606 (621)
Q Consensus 567 ~~~i~~~~g~~-------------------------------------~~~~~r~~~~~a~~~~~~~~l~~~~~~~~ 606 (621)
++||..-.|+= ..|.+|+|.....|.||+++|+++|+++.
T Consensus 410 ~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 410 LSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSF 486 (805)
T ss_pred hcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence 77888644431 13779999999999999999999999955
No 405
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=87.00 E-value=1.2 Score=50.28 Aligned_cols=157 Identities=10% Similarity=0.140 Sum_probs=107.4
Q ss_pred hHHHHHhhccccc-ccCCcEEeeecHhHhhhcCCCCCceeeeeecccC---CCccCCCchhHHHHHHHHHHHHHhcCChH
Q psy8733 448 FFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTVFHFKINADN---NSVYNTPPTFVVHVIQRVFAWIKRQGGLA 523 (621)
Q Consensus 448 ~~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~---~s~~nTP~~~~iy~~~~vl~~~~~~gg~~ 523 (621)
..|++.++.+|.| ||.| +++.+++.+++...+..+...+|....+. ...-.+||...|+.+.-.|+++.+.| .+
T Consensus 236 ~~Div~~t~hK~L~GP~G-g~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~-~~ 313 (475)
T PLN03226 236 YCDVVTTTTHKSLRGPRG-GMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPE-FK 313 (475)
T ss_pred CCeEEEecCcccccCCCc-eEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcC-HH
Confidence 3689999999999 8999 88888988764422222222233211111 11224688999999999999998765 67
Q ss_pred HHHHHHHHHHHHHHHHHhccCCc--ccccCCC--------CCc-ccHHHHHHHHHccCccccCC----CC---CCccce-
Q psy8733 524 KMEQNSLQKSVLLYQEIDNSDKF--YECPVQA--------GFP-LDELFLKEAKAHNMIQLKGH----RL---VGGIRA- 584 (621)
Q Consensus 524 ~~~~~~~~ka~~lY~~id~~~~~--~~~~v~~--------~~~-~~~~~~~~~~~~~i~~~~g~----~~---~~~~r~- 584 (621)
...++..+-++.|.+.+.+ .|| +...-+. ... ...++.+.+++.||+.-++. .+ -++||+
T Consensus 314 ~~~~~~~~na~~L~~~L~~-~G~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiG 392 (475)
T PLN03226 314 AYQKQVKANAAALANRLMS-KGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIG 392 (475)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccC
Confidence 8899999999999999877 332 1110000 001 22457788889999987764 22 456777
Q ss_pred ---eeccCCCHHHHHHHHHHHHHHHH
Q psy8733 585 ---SIYNAITVDEAVILVKFMKEFRH 607 (621)
Q Consensus 585 ---~~~~a~~~~~~~~l~~~~~~~~~ 607 (621)
-.-=.++.+|++.++++|.+.-.
T Consensus 393 t~~lt~~g~~~~d~~~ia~~i~~~~~ 418 (475)
T PLN03226 393 TPAMTSRGLVEKDFEKVAEFLHRAVT 418 (475)
T ss_pred cHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 35567889999999999988776
No 406
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=86.91 E-value=30 Score=38.92 Aligned_cols=120 Identities=15% Similarity=0.262 Sum_probs=70.0
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCCcc---cccccc----eEEecccccc--CCC
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSRKF---DVSKFG----VIIAGAQKNI--GPA 333 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~pI---Dv~~~g----vl~asaqK~l--GP~ 333 (621)
+..+|.+=......|+..|- +++++|+++|+|=+|+ +| +.= -.+.+| +++.| |.+ |-|
T Consensus 225 ~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfG-RtG~~~a~~~~gv~PDivt~g--K~l~gG~P 301 (459)
T PRK06931 225 KPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFA-RTGKMFAFEHAGIEPDIIVMS--KAVGGGLP 301 (459)
T ss_pred ceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCC-cCchHHHhhhcCCCCCEEEec--ccccCCcc
Confidence 34555543333444665542 4568999999999987 53 211 122333 56654 888 322
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.+..++++ +... +. ...++|+ .|..+..+..++|+.+.+. + +.++.+++.++|++.|+++
T Consensus 302 -i~av~~~~~~-~~~~---~~--------~~~~T~~-gnpla~aaala~L~~l~~~-~---l~~~~~~~G~~l~~~L~~l 363 (459)
T PRK06931 302 -LAVLGIKKEF-DAWQ---PG--------GHTGTFR-GNQLAMATGLTTLKILKEE-N---LAQNAAERGEWLKAQLAEL 363 (459)
T ss_pred -eeeeeeHHHH-hhcc---CC--------CCCCCCC-CCHHHHHHHHHHHHHHHhC-C---HHHHHHHHHHHHHHHHHHH
Confidence 5667777664 3221 11 1235554 3344567777889988776 3 4556666777777777654
No 407
>PRK12566 glycine dehydrogenase; Provisional
Probab=86.34 E-value=16 Score=44.65 Aligned_cols=142 Identities=11% Similarity=0.110 Sum_probs=75.9
Q ss_pred CCCceEEEEecccccccccccc--c---cccCCCcEEE--ecccccCCCcccccccc--eEEecccc-----ccCCCccE
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--I---PDSQGIPLVS--DMSSNFLSRKFDVSKFG--VIIAGAQK-----NIGPAGIT 336 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--i---~~~~g~llvv--DavSs~G~~pIDv~~~g--vl~asaqK-----~lGP~Glg 336 (621)
+.++..|. ..+-+..|.+.|+ + +++.|+++++ |-.+-.+-. .-.+|| ++++++|- ++|-|+.|
T Consensus 206 ~~~~~~v~-vq~P~~~G~i~d~~~i~~~~h~~gal~~~~~d~laL~ll~--~Pge~GADI~vG~~Q~fGvp~~~GGP~ag 282 (954)
T PRK12566 206 AHAVFGAL-LQYPDTHGEIRDLRPLIDQLHGQQALACVAADLLSLLVLT--PPGELGADVVLGSTQRFGVPMGYGGPHAA 282 (954)
T ss_pred CCCEEEEE-EECCCCceEEccHHHHHHHHHHcCCEEEEEeCHHHHhCCC--ChhhcCCcEEeeCCCcCCCCCCCCCCCee
Confidence 34544444 4455667988774 3 3567877553 322211111 124566 77776663 44567799
Q ss_pred EEEEchhHHhhhCCCC----------Cce-eeccccccC-CCccCCchHHH---HHHHHHHH--HHHHhhCCHHHHHHHH
Q psy8733 337 VVIVREDLLEYALPIT----------PTV-FHFKINADN-NSVYNTPPTFV---VHVIQRVF--AWIKRQGGLAKMEQNS 399 (621)
Q Consensus 337 ~livr~~ll~~~~~~~----------P~~-ld~~~~~~~-~s~~~TP~v~~---I~aL~~aL--~~i~~~gGl~~i~~r~ 399 (621)
++.+++++..++.-.. +.| +-+.....+ ++.--|.|+=. +.++.+++ -|.-.+ |+.++.++.
T Consensus 283 ~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~-Gl~~ia~~~ 361 (954)
T PRK12566 283 YFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPE-GLKRIAQRV 361 (954)
T ss_pred eeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChH-HHHHHHHHH
Confidence 9999998876553211 111 111110000 01112444322 22222222 233334 899999999
Q ss_pred HHHHHHHHHHHHccCCcc
Q psy8733 400 LQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 400 ~~la~~L~e~L~~~~g~~ 417 (621)
..++.+|.+.|.+. |+.
T Consensus 362 ~~~a~~l~~~l~~~-g~~ 378 (954)
T PRK12566 362 HRLTAILAAGLEAK-GIK 378 (954)
T ss_pred HHHHHHHHHHHHhc-CCc
Confidence 99999999999884 443
No 408
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=85.25 E-value=46 Score=37.21 Aligned_cols=140 Identities=12% Similarity=0.112 Sum_probs=76.5
Q ss_pred CceEEEEeccccccc-ccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccc-----cCCCccEEEE
Q psy8733 273 EASYLYYCDNETVDG-VEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKN-----IGPAGITVVI 339 (621)
Q Consensus 273 ~t~~V~~thnET~tG-v~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~-----lGP~Glg~li 339 (621)
++..|.+.. -+..| ...++ ..+.+|++++|=+=--..+.-=.--+|| ++++++|-. +|-|..|++.
T Consensus 210 ~~~gv~vQy-P~~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGPhag~fA 288 (450)
T COG0403 210 DVFGVLVQY-PNTFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGPHAGYFA 288 (450)
T ss_pred CeEEEEEec-CCCCCccchhHHHHHHHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCCcceeeee
Confidence 455555444 45667 44444 2357787766532111111111224566 999999974 3556689999
Q ss_pred EchhHHhhhCCCC----------Cce-eeccccccC-CCccCCchHH-----HHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q psy8733 340 VREDLLEYALPIT----------PTV-FHFKINADN-NSVYNTPPTF-----VVHVIQRVFAWIKRQGGLAKMEQNSLQK 402 (621)
Q Consensus 340 vr~~ll~~~~~~~----------P~~-ld~~~~~~~-~s~~~TP~v~-----~I~aL~~aL~~i~~~gGl~~i~~r~~~l 402 (621)
++++...+++-.. |.| +-+++...+ ++.--|.|+= ...+....+-|+-.+ |+.++..|+.++
T Consensus 289 ~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp~-GLk~iA~r~~~~ 367 (450)
T COG0403 289 VKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGPQ-GLKEIAERIHRL 367 (450)
T ss_pred EhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHH
Confidence 9999965543211 111 111110000 0001244432 222222333455556 899999999999
Q ss_pred HHHHHHHHHccC
Q psy8733 403 SVLLYQEIDNSD 414 (621)
Q Consensus 403 a~~L~e~L~~~~ 414 (621)
+.++.++|++.+
T Consensus 368 a~~la~~L~~~~ 379 (450)
T COG0403 368 AAYLAAGLKEIG 379 (450)
T ss_pred HHHHHHHHhhcC
Confidence 999999999764
No 409
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=85.12 E-value=16 Score=40.36 Aligned_cols=139 Identities=12% Similarity=0.091 Sum_probs=87.8
Q ss_pred ccccccC-CcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy8733 457 QKNIGPA-GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVL 535 (621)
Q Consensus 457 qk~~Gpa-Gl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ka~~ 535 (621)
=|.+||. -++.++.++++++.... ....+++.+ |.++..++..+|+.+....=++.+.+..++..+.
T Consensus 267 sK~l~~G~rig~v~~~~~~~~~~~~-----------~~~~~t~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 334 (425)
T PRK08088 267 AKSIAGGFPLAGVTGRAEVMDAIAP-----------GGLGGTYAG-NPIACAAALAVLKVFEQENLLQKANALGEKLKDG 334 (425)
T ss_pred eccccCCCcceeeEecHHHHhhcCC-----------CCCCCCCCc-CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3555542 26778888888765321 234456664 5567888889999887666666666666666666
Q ss_pred HHHHHhccCCc--------ccc-cC-CC------CCcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHH
Q psy8733 536 LYQEIDNSDKF--------YEC-PV-QA------GFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILV 599 (621)
Q Consensus 536 lY~~id~~~~~--------~~~-~v-~~------~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~ 599 (621)
+-+..+.++.+ +-. .. ++ +......|.+.+.++|++...+....+.||++.=..++.+|++..+
T Consensus 335 l~~l~~~~~~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~~~iRl~~~~~~t~~ei~~~i 414 (425)
T PRK08088 335 LLAIAEKHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGL 414 (425)
T ss_pred HHHHHHhCCCeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCcCHHHHHHHH
Confidence 66655555421 100 11 11 1113566889999999875443333467898653368999999999
Q ss_pred HHHHHHHH
Q psy8733 600 KFMKEFRH 607 (621)
Q Consensus 600 ~~~~~~~~ 607 (621)
+.|++..+
T Consensus 415 ~~l~~~l~ 422 (425)
T PRK08088 415 EIIAQCFD 422 (425)
T ss_pred HHHHHHHH
Confidence 88877654
No 410
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=84.93 E-value=4.7 Score=43.60 Aligned_cols=131 Identities=12% Similarity=0.054 Sum_probs=73.2
Q ss_pred hhcccccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy8733 454 AGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQ 531 (621)
Q Consensus 454 a~~qk~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ 531 (621)
.|-=|.+|++| ++.++.++++++...+ ++. .+..+++.+..+.+-..|+.. ..-++.+.++.++
T Consensus 235 ~S~SK~~g~~GlRiG~~i~~~~l~~~~~~-------~~~-----~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~ 300 (385)
T PRK09276 235 HSLSKTYNMTGWRIGFAVGNADLIAGLGK-------VKS-----NVDSGVFQAIQEAGIAALNGP--QEVVEELRKIYQE 300 (385)
T ss_pred ecchhhcCCcchhheeeeCCHHHHHHHHH-------HHh-----hccCCCCHHHHHHHHHHHcCc--HHHHHHHHHHHHH
Confidence 44448999999 8888999888876321 111 111233344444443333210 1235667777888
Q ss_pred HHHHHHHHHhccC--------CcccccCCCCCcccHHHHHHH-HHccCccccCCC--C--CCccceeeccCCCHHHHHHH
Q psy8733 532 KSVLLYQEIDNSD--------KFYECPVQAGFPLDELFLKEA-KAHNMIQLKGHR--L--VGGIRASIYNAITVDEAVIL 598 (621)
Q Consensus 532 ka~~lY~~id~~~--------~~~~~~v~~~~~~~~~~~~~~-~~~~i~~~~g~~--~--~~~~r~~~~~a~~~~~~~~l 598 (621)
+.+.+++.+++.. +||...--+..-...+|.+.+ +++|+....|.. . .+.+|++. +.+.|++++.
T Consensus 301 ~~~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~--~~~~~~l~~~ 378 (385)
T PRK09276 301 RRDILVEGLRKLGLEVEPPKATFYVWAPVPKGYTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIAL--TVPDERIEEA 378 (385)
T ss_pred HHHHHHHHHHhCCCcccCCCcceEEEEECCCCCCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEe--CCCHHHHHHH
Confidence 8899999997641 232221101111234576665 468998777643 2 35699986 4566544444
Q ss_pred HH
Q psy8733 599 VK 600 (621)
Q Consensus 599 ~~ 600 (621)
++
T Consensus 379 l~ 380 (385)
T PRK09276 379 VE 380 (385)
T ss_pred HH
Confidence 43
No 411
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=84.85 E-value=5 Score=44.65 Aligned_cols=115 Identities=15% Similarity=0.128 Sum_probs=64.2
Q ss_pred cccccccccc--------ccccCCCcEEEecccccCCCccc--ccc-cc----eEEeccccccC--CCccEEEEEchhHH
Q psy8733 283 ETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRKFD--VSK-FG----VIIAGAQKNIG--PAGITVVIVREDLL 345 (621)
Q Consensus 283 ET~tGv~~p~--------i~~~~g~llvvDavSs~G~~pID--v~~-~g----vl~asaqK~lG--P~Glg~livr~~ll 345 (621)
|.+.|..-|. +++++|+++|+|=+++ |...-- .++ +| +++. =|.+| -| +|.+..++++.
T Consensus 194 Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~t-G~~~~~~g~~~~~gv~PDi~t~--gK~lggG~p-~~av~~~~~i~ 269 (431)
T PRK06209 194 EPATADEPQDGFLHEVRRLCHENGALFILDEMIT-GFRWHMRGAQKLYGIVPDLSCF--GKALGNGFA-VSALAGKREYM 269 (431)
T ss_pred ccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccc-cCCcCcchhhHHhCCCcceeee--hhhhcCCcc-cEEEEEHHHHH
Confidence 7888873331 4568999999999873 322110 111 22 3333 47774 23 56777788876
Q ss_pred hhhC--CC-CCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 346 EYAL--PI-TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 346 ~~~~--~~-~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+... .. .+..+ ..+...+||...+.+..++|+.+.++ + +.++..++.+++++.|++
T Consensus 270 ~~~~~~~~~~~~~~-------~~~~T~~~np~~~aaa~a~l~~i~~~-~---~~~~~~~~g~~l~~~L~~ 328 (431)
T PRK06209 270 ELGGLEHTDRERVF-------LLSTTHGAETHALAAAIATMAIYRDE-D---VIERLHEQGAKLAAGVNE 328 (431)
T ss_pred hhhcccccCCCCce-------eeccCCCCCHHHHHHHHHHHHHHhcc-C---HHHHHHHHHHHHHHHHHH
Confidence 5311 00 00000 01223467777888899999999876 4 233444445555555544
No 412
>PRK14012 cysteine desulfurase; Provisional
Probab=84.06 E-value=2 Score=46.98 Aligned_cols=160 Identities=17% Similarity=0.098 Sum_probs=103.8
Q ss_pred hHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 448 FFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 448 ~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
..|++.+|.+|.+||.|+++++++++.+.+ ..|....+.. . ..-...||++..+.-++.-++.++. +++.+.+
T Consensus 196 ~~D~~~~s~~K~~gp~g~G~l~~~~~~~~~---~~~~~~g~~~-~-~~~~~gt~~~~~~~~l~~al~~~~~--~~~~~~~ 268 (404)
T PRK14012 196 KVDLMSFSAHKIYGPKGIGALYVRRKPRVR---LEAQMHGGGH-E-RGMRSGTLPTHQIVGMGEAARIAKE--EMATENE 268 (404)
T ss_pred CCCEEEEehhhccCCCceEEEEEecCCCCC---CCceecCCCc-c-CCccCCCcCHHHHHHHHHHHHHHHh--hHHHHHH
Confidence 367788899999999999999999987543 2332221110 1 1122468999999989888888764 4677888
Q ss_pred HHHHHHHHHHHHHhccCCccc--ccCCCCC-------c-cc-HHHHHHHHHccCccccCCC-------------------
Q psy8733 528 NSLQKSVLLYQEIDNSDKFYE--CPVQAGF-------P-LD-ELFLKEAKAHNMIQLKGHR------------------- 577 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~~~~~--~~v~~~~-------~-~~-~~~~~~~~~~~i~~~~g~~------------------- 577 (621)
+.++-++.+++.|.+.++... .+.+... . .+ ..+.+.+++.++-.+.-|.
T Consensus 269 ~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~ 348 (404)
T PRK14012 269 RIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDEL 348 (404)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcCHHHHHHhCCCeEEEchhhhCCCCCCCCHHHHHcCCChhh
Confidence 888888999998876443210 0000000 0 11 2344444433332221111
Q ss_pred CCCccceeeccCCCHHHHHHHHHHHHHHHHHcCCCCc
Q psy8733 578 LVGGIRASIYNAITVDEAVILVKFMKEFRHKHSRLSA 614 (621)
Q Consensus 578 ~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~ 614 (621)
..+.||++..+-+|.+|++.+++.|+++.++..++++
T Consensus 349 ~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~~~~~ 385 (404)
T PRK14012 349 AHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLRELSP 385 (404)
T ss_pred cCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1367999999999999999999999998877655543
No 413
>PRK07483 hypothetical protein; Provisional
Probab=81.51 E-value=9.5 Score=42.73 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=65.9
Q ss_pred ccccCCCcEEEecccc-cCCCcccc---ccc----ceEEeccccccC--CCccEEEEEchhHHhhhCCCCCceeeccccc
Q psy8733 293 IPDSQGIPLVSDMSSN-FLSRKFDV---SKF----GVIIAGAQKNIG--PAGITVVIVREDLLEYALPITPTVFHFKINA 362 (621)
Q Consensus 293 i~~~~g~llvvDavSs-~G~~pIDv---~~~----gvl~asaqK~lG--P~Glg~livr~~ll~~~~~~~P~~ld~~~~~ 362 (621)
+++++|+++|+|=+|+ +| +.=.+ +.+ |+++. =|.+| -.=+|.++.++++.+.+.+. +.. .
T Consensus 229 lc~~~gillI~DEV~tGfG-RtG~~~a~~~~gv~PDiv~~--gK~l~gG~~Pi~av~~~~~i~~~~~~~-~~~------~ 298 (443)
T PRK07483 229 VCDRYGVLLILDEVMCGMG-RTGTLFACEEDGVAPDLVTI--AKGLGAGYQPIGAVLASDRIYDAIADG-SGF------F 298 (443)
T ss_pred HHHHhCCEEEEecceeCcc-cCcHHHHHhhcCCCCCeeee--hhhhccCccccEEEEEcHHHHHHHhcC-CCc------c
Confidence 4578999999999987 43 32211 223 35555 48883 21289999999987655321 100 1
Q ss_pred cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 363 DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 363 ~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
...++++--| .+..+..++|+.+.+. ++.++.+++.++|++.|+++
T Consensus 299 ~h~~T~~gnp-l~~aaa~a~l~~i~~~----~l~~~~~~~g~~l~~~L~~l 344 (443)
T PRK07483 299 QHGHTYLGHA-TACAAALAVQRVIAED----GLLANVRARGEQLRARLRER 344 (443)
T ss_pred ccCCCCCCCH-HHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHH
Confidence 1235554333 4466777889999876 35566677778888877653
No 414
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=80.95 E-value=86 Score=33.79 Aligned_cols=88 Identities=15% Similarity=0.213 Sum_probs=65.8
Q ss_pred CCCCccccCCCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCcccccc----cc---eEEec
Q psy8733 261 SIPDQSTWNRDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRKFDVSK----FG---VIIAG 325 (621)
Q Consensus 261 ~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~pIDv~~----~g---vl~as 325 (621)
.-+|.+.+.+..++.+|+++--.|.||.+.-. +++.+|+++++|-+-++.---|.+++ |+ ++++|
T Consensus 167 Y~vDF~~l~i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~w~~NiilC~S 246 (417)
T COG3977 167 YHVDFEHLHIGESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPLWNENIILCMS 246 (417)
T ss_pred eccCHHHcccccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccccccCCCCEEEEee
Confidence 34566777888899999999999999986542 45689999999987766555555554 44 66666
Q ss_pred cccccCCCc--cEEEEEchhHHhhhC
Q psy8733 326 AQKNIGPAG--ITVVIVREDLLEYAL 349 (621)
Q Consensus 326 aqK~lGP~G--lg~livr~~ll~~~~ 349 (621)
--| +|-|| .|+++..++++..+.
T Consensus 247 LSK-~GLPG~R~GIiIane~viqait 271 (417)
T COG3977 247 LSK-LGLPGSRCGIIIANEKVIQAIT 271 (417)
T ss_pred hhh-cCCCCcceeEEEccHHHHHHHH
Confidence 666 57555 799999999987664
No 415
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=79.54 E-value=19 Score=38.45 Aligned_cols=127 Identities=18% Similarity=0.248 Sum_probs=75.8
Q ss_pred ccccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy8733 457 QKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSV 534 (621)
Q Consensus 457 qk~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ka~ 534 (621)
=|-+|.+| ++.++..+++++.... .+ +.++ ++.++-+++-..|+ + |.++...+..+++.+
T Consensus 212 SK~~~~~GlRiG~~v~~~~~~~~~~~-----------~~--~~~~-~~~~~q~~~~~~l~---~-~~~~~~~~~~~~~r~ 273 (351)
T PRK14807 212 SKAFGLAGLRVGYAVANENILKYLNL-----------VK--SPYN-INSLSQVIALKVLR---T-GVLKERVNYILNERE 273 (351)
T ss_pred hHhcccchhceeeeecCHHHHHHHHH-----------cc--CCCC-cCHHHHHHHHHHHh---H-HHHHHHHHHHHHHHH
Confidence 36678666 5667777777765321 11 1233 34566666655554 2 345555555667777
Q ss_pred HHHHHHhccCCcccccCCCC------CcccHHHHHHHHHccCccccCC---CCCCccceeeccCCCHHHHHHHHHHHHHH
Q psy8733 535 LLYQEIDNSDKFYECPVQAG------FPLDELFLKEAKAHNMIQLKGH---RLVGGIRASIYNAITVDEAVILVKFMKEF 605 (621)
Q Consensus 535 ~lY~~id~~~~~~~~~v~~~------~~~~~~~~~~~~~~~i~~~~g~---~~~~~~r~~~~~a~~~~~~~~l~~~~~~~ 605 (621)
.+++.+.+.+++ ......+ -.-...+.+.+.++|+....+. +..+.||++.= +.++.++|++-|+++
T Consensus 274 ~l~~~l~~~~g~-~~~~~~~~~~~i~~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~ 349 (351)
T PRK14807 274 RLIKELSKIPGI-KVYPSKTNFILVKFKDADYVYQGLLERGILVRDFSKVEGLEGALRITVS---SCEANDYLINGLKEL 349 (351)
T ss_pred HHHHHHHhCCCc-EECcCCccEEEEEcCCHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcC---CHHHHHHHHHHHHHh
Confidence 888888765442 1111111 0123568888999998754332 33567999963 568888999888875
No 416
>PRK12414 putative aminotransferase; Provisional
Probab=79.23 E-value=11 Score=40.77 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=77.6
Q ss_pred HHhhcccccccCCc--EEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHH
Q psy8733 452 IIAGAQKNIGPAGI--TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNS 529 (621)
Q Consensus 452 ~~a~~qk~~GpaGl--~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~ 529 (621)
+..|-=|.+|.+|+ +.++..+++++... . ......+ .+|.++-+++-..|+ +......+.+.-
T Consensus 229 ~~~SfSK~~~~pGlRiG~~v~~~~l~~~l~----------~-~~~~~~~-~~s~~~q~a~~~~l~---~~~~~~~~~~~~ 293 (384)
T PRK12414 229 IVSSFGKSYHVTGWRVGYCLAPAELMDEIR----------K-VHQFMVF-SADTPMQHAFAEALA---EPASYLGLGAFY 293 (384)
T ss_pred EEecccccccCccceEEEEecCHHHHHHHH----------H-HHhheec-CCCcHHHHHHHHHhc---CChHHHHHHHHH
Confidence 33455688998886 66888888876531 1 1222233 344556666554443 222234456677
Q ss_pred HHHHHHHHHHHhccC--------Ccccc-cCCCC-CcccHHHH-HHHHHccCccccCC--CC----CCccceeeccCCCH
Q psy8733 530 LQKSVLLYQEIDNSD--------KFYEC-PVQAG-FPLDELFL-KEAKAHNMIQLKGH--RL----VGGIRASIYNAITV 592 (621)
Q Consensus 530 ~~ka~~lY~~id~~~--------~~~~~-~v~~~-~~~~~~~~-~~~~~~~i~~~~g~--~~----~~~~r~~~~~a~~~ 592 (621)
++|.+.+++.+.+.. +||.. .+.+. ...+.++. +.++++|+....|. +. .+.||++.=. +.
T Consensus 294 ~~~r~~l~~~L~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~--~~ 371 (384)
T PRK12414 294 QRKRDLLARELAGSRFELLPSEGSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK--DD 371 (384)
T ss_pred HHHHHHHHHHHHhCCCeecCCCcceEEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecC--CH
Confidence 888999999998642 34433 22211 11244555 66788999876664 21 3459999875 46
Q ss_pred HHHHHHHHHH
Q psy8733 593 DEAVILVKFM 602 (621)
Q Consensus 593 ~~~~~l~~~~ 602 (621)
|+++.-++-|
T Consensus 372 ~~~~~~~~rl 381 (384)
T PRK12414 372 ATLVEGARRL 381 (384)
T ss_pred HHHHHHHHHH
Confidence 6655555444
No 417
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=78.66 E-value=4.1 Score=44.37 Aligned_cols=152 Identities=14% Similarity=0.167 Sum_probs=88.7
Q ss_pred hHHHHHhhcccccc-cCCcEEeeecHhHhhhcCCCCCceeeeeecccCCC-ccCCCchhHHHHHHHHHHHHHhcCChHHH
Q psy8733 448 FFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINADNNS-VYNTPPTFVVHVIQRVFAWIKRQGGLAKM 525 (621)
Q Consensus 448 ~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s-~~nTP~~~~iy~~~~vl~~~~~~gg~~~~ 525 (621)
.-|++..|.||.+| |.|+++++++++++++..+..+.+. ......-.+ ++-||.+..++-+....+++. .+
T Consensus 210 g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~------~~ 282 (387)
T PRK09331 210 GADFIVGSGHKSMAASAPSGVLATTEEYADKVFRTSRKFG-VKEVELLGCTLRGAPLVTLMASFPHVVERVK------RW 282 (387)
T ss_pred CCCEEEeeCcccccCCCCEEEEEECHHHHhhcccccCCCc-ccceeeeceecCchHHHHHHHHHHHHHHHHH------HH
Confidence 35788899999997 7899999999999887544332211 011000111 222333333333333333322 22
Q ss_pred HHHHHHHHHHHHHHHhccCCccccc----------CC-CCC-------c-ccHHHHHHHHHccCccccCCCCCCc-ccee
Q psy8733 526 EQNSLQKSVLLYQEIDNSDKFYECP----------VQ-AGF-------P-LDELFLKEAKAHNMIQLKGHRLVGG-IRAS 585 (621)
Q Consensus 526 ~~~~~~ka~~lY~~id~~~~~~~~~----------v~-~~~-------~-~~~~~~~~~~~~~i~~~~g~~~~~~-~r~~ 585 (621)
++..+.++.+++.+.+.++|=... ++ +.. . ....|.+.++++||.... ...++ +|+.
T Consensus 283 -~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~--~~~~~i~ri~ 359 (387)
T PRK09331 283 -DEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIK--PGATKEFKLS 359 (387)
T ss_pred -HHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEEc--cCCceEEEEE
Confidence 334567788999998886641110 01 000 0 113377888999997221 11344 5665
Q ss_pred eccCCCHHHHHHHHHHHHHHHHHcC
Q psy8733 586 IYNAITVDEAVILVKFMKEFRHKHS 610 (621)
Q Consensus 586 ~~~a~~~~~~~~l~~~~~~~~~~~~ 610 (621)
. ..++.|+++.|++.|++..++++
T Consensus 360 ~-~g~t~~di~~l~~aL~~i~~~~~ 383 (387)
T PRK09331 360 T-YGLTWEQVEYVADAFKEIAEKYG 383 (387)
T ss_pred e-ccCCHHHHHHHHHHHHHHHHhcC
Confidence 5 55999999999999999987653
No 418
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=77.20 E-value=18 Score=41.04 Aligned_cols=128 Identities=13% Similarity=0.142 Sum_probs=73.0
Q ss_pred CceEEEEec-ccccccccccc---------ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccC--CC
Q psy8733 273 EASYLYYCD-NETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIG--PA 333 (621)
Q Consensus 273 ~t~~V~~th-nET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lG--P~ 333 (621)
+..+|.+-. .-...|+..|- +++++|+++|+|=+|+ +|- ..+-.+.+| +++.| |.+| --
T Consensus 236 ~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~~g--Kgl~gG~~ 313 (472)
T PRK08742 236 EICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCLS--KGLTGGFL 313 (472)
T ss_pred ceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEEEc--ccccCCCC
Confidence 455555433 23344766552 4568999999999987 542 122223333 66664 8883 21
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
=+|.++.++++.+......+ .......++|+- +..+..+..++|+.+.++ + +.++.+++.++|.+.++.
T Consensus 314 Plaav~~~~ei~~~~~~~~~-----~~~~~h~~T~~g-npl~~Aaa~a~L~~i~~~-~---l~~~~~~~g~~l~~~~~~ 382 (472)
T PRK08742 314 PLSAVLATQQLYDAFLDDSR-----ERAFLHSHSYTG-NPLACAAALATLDIFADD-D---VIARNQPTAARMTQLAAQ 382 (472)
T ss_pred CcceeeccHHHHHHhhccCc-----cCccCcCCCCCc-cHHHHHHHHHHHHHHHHC-C---HHHHHHHHHHHHHHHHHH
Confidence 18889999998765422110 000012345543 334567777889999886 4 345555566666655554
No 419
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=77.03 E-value=4.2 Score=45.47 Aligned_cols=150 Identities=12% Similarity=0.157 Sum_probs=100.4
Q ss_pred hHHHHHhhccccc-ccCCcEEeeecHhHhhhcCCCC-CceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHH
Q psy8733 448 FFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPIT-PTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKM 525 (621)
Q Consensus 448 ~~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~~-p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~ 525 (621)
..|++.+|+-|.| ||.| +++.+++++++.-...+ +.+ |. ...-||+...|+-+...|+++.+.| .+.+
T Consensus 235 ~~D~l~~S~hK~l~GP~G-g~l~~~~~~~~~l~~~~~~~~--~p------~~~G~~~~~~iaal~~al~~~~~~~-~~~~ 304 (452)
T PTZ00094 235 YADVVTTTTHKSLRGPRS-GLIFYRKKVKPDIENKINEAV--FP------GLQGGPHNHQIAAIAVQLKEVQSPE-WKEY 304 (452)
T ss_pred CCcEEEcCCccCCCCCCc-eEEEEecccchHHHHhhcccc--CC------CCCCCchHHHHHHHHHHHHHHhChh-HHHH
Confidence 3689999999988 7999 88888887654211100 000 01 1234788999999999999997554 6778
Q ss_pred HHHHHHHHHHHHHHHhccCCc--ccc-------cCCCCC-ccc-HHHHHHHHHccCccc-cC-------CCCCCccceee
Q psy8733 526 EQNSLQKSVLLYQEIDNSDKF--YEC-------PVQAGF-PLD-ELFLKEAKAHNMIQL-KG-------HRLVGGIRASI 586 (621)
Q Consensus 526 ~~~~~~ka~~lY~~id~~~~~--~~~-------~v~~~~-~~~-~~~~~~~~~~~i~~~-~g-------~~~~~~~r~~~ 586 (621)
.++..+.++.|.+.+.+. +| +.. +|.=.. ..+ ..+.+.++++||..- .| ++ .+++|++.
T Consensus 305 ~~~i~~l~~~l~~~L~~~-g~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~-~~~vRis~ 382 (452)
T PTZ00094 305 AKQVLKNAKALAAALEKR-GYDLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALN-PSGVRLGT 382 (452)
T ss_pred HHHHHHHHHHHHHHHHhC-CcEEecCCCCCceEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCCCcCCC-CCeEEECC
Confidence 888888999999988664 32 110 000011 123 346677778899863 22 22 47899997
Q ss_pred ----ccCCCHHHHHHHHHHHHHHHHHc
Q psy8733 587 ----YNAITVDEAVILVKFMKEFRHKH 609 (621)
Q Consensus 587 ----~~a~~~~~~~~l~~~~~~~~~~~ 609 (621)
--.++.+|++.|+++|++....+
T Consensus 383 ~~~tt~g~~~~di~~l~~~l~~~~~~~ 409 (452)
T PTZ00094 383 PALTTRGAKEKDFKFVADFLDRAVKLA 409 (452)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 33346999999999999887653
No 420
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=76.39 E-value=6.8 Score=41.97 Aligned_cols=149 Identities=15% Similarity=0.202 Sum_probs=90.6
Q ss_pred HHHHHhhcccccc-cCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 449 FGVIIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 449 ~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
.|++..|.+|.+| |.|+++++.+++++++..+.... ++.... ..+..|++...++.+...++++.+. ++..++
T Consensus 192 ~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~al~~~~~~--~~~~~~ 265 (361)
T cd06452 192 ADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQM-FKIKEV---ELLGCTLRGAPLVTLMASFPHVKER--VKRWDE 265 (361)
T ss_pred CCEEEecCCccccCCCCeEEEEECHHHHHHHhccccc-ccccee---eeeccccCchHHHHHHHHHHHHHHH--HHHHHH
Confidence 4778899999997 66899999999998875432211 111111 1122345445555555555544322 233333
Q ss_pred HHHHHHHHHHHHHhccCCcccc--c--------CCCC-C-------c-ccHHHHHHHHHccCccccCCCCCCccceeecc
Q psy8733 528 NSLQKSVLLYQEIDNSDKFYEC--P--------VQAG-F-------P-LDELFLKEAKAHNMIQLKGHRLVGGIRASIYN 588 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~~~~~~--~--------v~~~-~-------~-~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~ 588 (621)
. .++++.+++.|.+.++|-.. . ++.. . . ....|.+.++++||.. ...+..+-+|++. +
T Consensus 266 ~-~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~-~~~~~~~~~ri~~-~ 342 (361)
T cd06452 266 E-VEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHG-IKPGLTRYFKLST-Y 342 (361)
T ss_pred H-HHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHHcCceE-EcCCCceEEEEEe-c
Confidence 2 44568899999887664211 0 0101 0 0 1125888899999983 2233334589999 6
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy8733 589 AITVDEAVILVKFMKEFR 606 (621)
Q Consensus 589 a~~~~~~~~l~~~~~~~~ 606 (621)
.++.||.+.|++.|+++.
T Consensus 343 g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 343 GLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 689999999999998753
No 421
>KOG0633|consensus
Probab=76.03 E-value=32 Score=36.18 Aligned_cols=79 Identities=20% Similarity=0.206 Sum_probs=50.0
Q ss_pred cCCCCCceEEEEecccccccccccc--ccc----cCCCcEEEecc----cccCCCcccccccc--eEEeccccccCCCcc
Q psy8733 268 WNRDPEASYLYYCDNETVDGVEFNY--IPD----SQGIPLVSDMS----SNFLSRKFDVSKFG--VIIAGAQKNIGPAGI 335 (621)
Q Consensus 268 l~i~~~t~~V~~thnET~tGv~~p~--i~~----~~g~llvvDav----Ss~G~~pIDv~~~g--vl~asaqK~lGP~Gl 335 (621)
+..+...|.+.+|+-.+.||..... |-+ -.+.++|||-+ |+.+++--=|.++- ++.-+--|-+|-+|+
T Consensus 155 l~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivlqTlSKsfGLAGi 234 (375)
T KOG0633|consen 155 LELDSKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVLQTLSKSFGLAGI 234 (375)
T ss_pred HhccccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCceeehhhhhhhcCccee
Confidence 4566789999999999999987653 221 12578888853 23344333345554 555566788888774
Q ss_pred --EEEEEchhHHh
Q psy8733 336 --TVVIVREDLLE 346 (621)
Q Consensus 336 --g~livr~~ll~ 346 (621)
|+-+....+.+
T Consensus 235 RvG~~~~~~~ia~ 247 (375)
T KOG0633|consen 235 RVGYGAFPLSIAE 247 (375)
T ss_pred EeecccccHHHHH
Confidence 55555555543
No 422
>KOG0258|consensus
Probab=75.53 E-value=15 Score=40.42 Aligned_cols=85 Identities=19% Similarity=0.159 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCcccccCCCC------CcccHHH----------------HHHHHHccCc--cccCCCC-
Q psy8733 524 KMEQNSLQKSVLLYQEIDNSDKFYECPVQAG------FPLDELF----------------LKEAKAHNMI--QLKGHRL- 578 (621)
Q Consensus 524 ~~~~~~~~ka~~lY~~id~~~~~~~~~v~~~------~~~~~~~----------------~~~~~~~~i~--~~~g~~~- 578 (621)
++-..-++||+++|+.+.+-++..-++++-. -.+..+- ++.+++-||- -|+|+|-
T Consensus 363 ~il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~ 442 (475)
T KOG0258|consen 363 GILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQK 442 (475)
T ss_pred hHHHHHHHHhHHHHHHHhhcCceeeccCccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCC
Confidence 3445567899999999998887444444431 1233333 4455555655 5677766
Q ss_pred CCc--cceeeccCCCHHHHHHHHHHHHHHHHHc
Q psy8733 579 VGG--IRASIYNAITVDEAVILVKFMKEFRHKH 609 (621)
Q Consensus 579 ~~~--~r~~~~~a~~~~~~~~l~~~~~~~~~~~ 609 (621)
.|+ ||.++-|.-. +=++++.+|=++|..++
T Consensus 443 ~GtyH~R~TiLp~~~-~~i~~~~~fH~~f~~~Y 474 (475)
T KOG0258|consen 443 EGTYHFRTTILPPGL-EIIEKFKKFHAEFMDEY 474 (475)
T ss_pred CceeEEEEeecCchh-HHHHHHHHHHHHHHHhh
Confidence 677 9999999995 88999999988888765
No 423
>PRK08912 hypothetical protein; Provisional
Probab=74.39 E-value=18 Score=39.07 Aligned_cols=138 Identities=14% Similarity=0.148 Sum_probs=77.3
Q ss_pred HHHhhcccccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHh-cCChHHHHH
Q psy8733 451 VIIAGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKR-QGGLAKMEQ 527 (621)
Q Consensus 451 ~~~a~~qk~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~-~gg~~~~~~ 527 (621)
++..|.=|.+|.+| ++.++.++++++.... ......+++|+.... .+- .++.+ ..=++.+.+
T Consensus 225 i~~~S~SK~~g~~GlRiG~~~~~~~~~~~l~~-----------~~~~~~~~~~~~~q~-~~~---~~l~~~~~~~~~~~~ 289 (387)
T PRK08912 225 VKIGSAGKIFSLTGWKVGFVCAAPPLLRVLAK-----------AHQFLTFTTPPNLQA-AVA---YGLGKPDDYFEGMRA 289 (387)
T ss_pred EEEeechhhccCcCceeEEEecCHHHHHHHHH-----------HHhhccccCChHHHH-HHH---HHHhCCHHHHHHHHH
Confidence 34456668899888 7889999988765321 111223555543322 111 11211 112345677
Q ss_pred HHHHHHHHHHHHHhccC--------Ccccc-cCCC-CCc-ccHHHHHHH-HHccCccccCCCC------CCccceeeccC
Q psy8733 528 NSLQKSVLLYQEIDNSD--------KFYEC-PVQA-GFP-LDELFLKEA-KAHNMIQLKGHRL------VGGIRASIYNA 589 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~--------~~~~~-~v~~-~~~-~~~~~~~~~-~~~~i~~~~g~~~------~~~~r~~~~~a 589 (621)
+.+++.+.+++.+.... +||.. .+.+ ... -+.+|.+.+ +++|+....|... .+.||++.=.
T Consensus 290 ~~~~~~~~l~~~L~~~g~~~~~~~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~- 368 (387)
T PRK08912 290 DLARSRDRLAAGLRRIGFPVLPSQGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK- 368 (387)
T ss_pred HHHHHHHHHHHHHHhCCCcccCCCcceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeC-
Confidence 78888899999987631 33332 1111 111 234577665 6789986555421 4569999653
Q ss_pred CCHHHHHHHHHHHHHH
Q psy8733 590 ITVDEAVILVKFMKEF 605 (621)
Q Consensus 590 ~~~~~~~~l~~~~~~~ 605 (621)
+.+..++.++-|+++
T Consensus 369 -~~~~l~~~l~rl~~~ 383 (387)
T PRK08912 369 -RDATLDEAVERLAAA 383 (387)
T ss_pred -CHHHHHHHHHHHHHH
Confidence 566666666555554
No 424
>PLN00175 aminotransferase family protein; Provisional
Probab=73.12 E-value=22 Score=39.12 Aligned_cols=137 Identities=13% Similarity=0.084 Sum_probs=82.5
Q ss_pred hhcccccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy8733 454 AGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQ 531 (621)
Q Consensus 454 a~~qk~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ 531 (621)
.|.=|.+|.+| ++.++..+++++.. .. ......+ ++|.+.-+++...|+.- ..-++.+.+.-++
T Consensus 255 ~SfSK~~~~~G~RiG~~v~~~~l~~~l----------~~-~~~~~~~-~~s~~~Q~a~~~~l~~~--~~~~~~~~~~~~~ 320 (413)
T PLN00175 255 NSLGKTFSLTGWKIGWAIAPPHLTWGV----------RQ-AHSFLTF-ATATPMQWAAVAALRAP--ESYYEELKRDYSA 320 (413)
T ss_pred ecchhhccCcchheeeeEeCHHHHHHH----------HH-HHhhccC-CCCHHHHHHHHHHHhCC--HHHHHHHHHHHHH
Confidence 45568888677 57788888887653 11 2222233 34555666665555321 1225667778889
Q ss_pred HHHHHHHHHhccC--------Cccccc-CCC-CCcccHHHHHHH-HHccCccccC--CCC-----CCccceeeccCCCHH
Q psy8733 532 KSVLLYQEIDNSD--------KFYECP-VQA-GFPLDELFLKEA-KAHNMIQLKG--HRL-----VGGIRASIYNAITVD 593 (621)
Q Consensus 532 ka~~lY~~id~~~--------~~~~~~-v~~-~~~~~~~~~~~~-~~~~i~~~~g--~~~-----~~~~r~~~~~a~~~~ 593 (621)
|.+.+++.+++.. +||... +.+ +...+.+|.+.+ +++|+...-| ++. .+.||++.- .+.|
T Consensus 321 ~~~~l~~~L~~~g~~~~~p~g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~--~~~e 398 (413)
T PLN00175 321 KKDILVEGLKEVGFKVYPSSGTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFC--KDEE 398 (413)
T ss_pred HHHHHHHHHHHCCCeecCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEc--CCHH
Confidence 9999999998752 232221 111 111245687776 4679986655 321 345999985 4788
Q ss_pred HHHHHHHHHHHHH
Q psy8733 594 EAVILVKFMKEFR 606 (621)
Q Consensus 594 ~~~~l~~~~~~~~ 606 (621)
+.+..++-|+++.
T Consensus 399 ~l~~~~~rL~~~~ 411 (413)
T PLN00175 399 TLRAAVERMKTKL 411 (413)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777777654
No 425
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=73.09 E-value=12 Score=42.07 Aligned_cols=123 Identities=11% Similarity=0.089 Sum_probs=72.5
Q ss_pred Eecccccccccccc--------ccccCCCcEEEeccccc-----------CCCcccc--------cccceEEeccccccC
Q psy8733 279 YCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNF-----------LSRKFDV--------SKFGVIIAGAQKNIG 331 (621)
Q Consensus 279 ~thnET~tGv~~p~--------i~~~~g~llvvDavSs~-----------G~~pIDv--------~~~gvl~asaqK~lG 331 (621)
+++ ++..|...++ +++++|+++++|++=-+ +....++ +-+|.+..|.-|.+|
T Consensus 191 lt~-N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglg 269 (467)
T TIGR02617 191 ITC-NSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAM 269 (467)
T ss_pred EEE-ecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCC
Confidence 444 3446777764 45689999999995421 3333433 334699999999998
Q ss_pred -CCccEEEEEchh----HHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q psy8733 332 -PAGITVVIVRED----LLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLL 406 (621)
Q Consensus 332 -P~Glg~livr~~----ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L 406 (621)
|-|- ++..+++ +.++++..++.| +...+|+..+.--+-+++..|+...++ +-+..|.. -.++|
T Consensus 270 ApvGg-~Lag~d~~~~~l~~~~~~~~i~~-------EGf~tYGGlagrd~ea~a~Gl~e~~~~---~yl~~ri~-qv~yl 337 (467)
T TIGR02617 270 VPMGG-LLCFKDDSFFDVYTECRTLCVVQ-------EGFPTYGGLEGGAMERLAVGLYDGMNL---DWLAYRIN-QVQYL 337 (467)
T ss_pred Ccccc-eEEecchhHHHHHHHHHhhcccc-------cCCcCcCchhHHHHHHHHhhhhhcccH---HHHHHHHH-HHHHH
Confidence 7785 5555544 445554433322 223456655555666666666554332 33333333 34577
Q ss_pred HHHHHccC
Q psy8733 407 YQEIDNSD 414 (621)
Q Consensus 407 ~e~L~~~~ 414 (621)
-+.|++.|
T Consensus 338 ~~~L~~~G 345 (467)
T TIGR02617 338 VNGLEEIG 345 (467)
T ss_pred HHHHHhCC
Confidence 78887765
No 426
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=72.78 E-value=29 Score=38.18 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=53.7
Q ss_pred CCCCceEEEEecccccccccccc------cc------c--cCCCcEEEecccccCCCcccccccc--eEEeccccccC--
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY------IP------D--SQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-- 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~------i~------~--~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-- 331 (621)
+++++|+|++. .+.|.-+.- |. + ..+++++||-+=.=......-.+.| +++.|-=||.|
T Consensus 151 ~~~~tk~v~IQ---RSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~~vGADl~aGSLIKNpGGg 227 (403)
T PF06838_consen 151 LKPNTKMVLIQ---RSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEPTEVGADLMAGSLIKNPGGG 227 (403)
T ss_dssp HHTTEEEEEEE----S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GGGGT-SEEEEETTSGGGTT
T ss_pred hccCceEEEEe---cCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCccccchhheeccceeCCCCC
Confidence 55789988876 566776541 21 1 5789999999877777766666666 99999999993
Q ss_pred -CCccEEEEEchhHHhhhC
Q psy8733 332 -PAGITVVIVREDLLEYAL 349 (621)
Q Consensus 332 -P~Glg~livr~~ll~~~~ 349 (621)
-+.=|.+.-|+++.+++.
T Consensus 228 iAptGGYIaGr~~lVe~~a 246 (403)
T PF06838_consen 228 IAPTGGYIAGRKDLVERAA 246 (403)
T ss_dssp T-SS-EEEEESHHHHHHHH
T ss_pred ccCcCCEEechHHHHHHHH
Confidence 444599999999998763
No 427
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=71.93 E-value=40 Score=37.40 Aligned_cols=126 Identities=8% Similarity=0.010 Sum_probs=72.1
Q ss_pred cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHh---
Q psy8733 465 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID--- 541 (621)
Q Consensus 465 l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ka~~lY~~id--- 541 (621)
++.++.++++++.-... .. ...++||. +|.+.....-.+|+-+.+.. ..++.+++.+.+.+-+.
T Consensus 273 ~ga~~~~~~i~~~~~~~-------~~-~~~~~T~~-~~p~~~aaa~a~L~~~~~~~----~~~~~~~~~~~~~~~l~~~~ 339 (426)
T PRK00062 273 VGAFGGRREIMEQLAPL-------GP-VYQAGTLS-GNPLAMAAGLATLKLLKEPG----FYEELEALTKRLAEGLKEAA 339 (426)
T ss_pred ceeeeEHHHHHHhhccC-------CC-ceecccCc-CCHHHHHHHHHHHHHHhcch----HHHHHHHHHHHHHHHHHHHH
Confidence 56678888887653210 00 11234444 55666778888888886542 33344444444444443
Q ss_pred -ccC--------C-cccccCCC------------CCcccHHHHHHHHHccCccc-cCCCCCCccceeeccCCCHHHHHHH
Q psy8733 542 -NSD--------K-FYECPVQA------------GFPLDELFLKEAKAHNMIQL-KGHRLVGGIRASIYNAITVDEAVIL 598 (621)
Q Consensus 542 -~~~--------~-~~~~~v~~------------~~~~~~~~~~~~~~~~i~~~-~g~~~~~~~r~~~~~a~~~~~~~~l 598 (621)
+++ + |+...+.+ +......|.+.+.++|+... .|| +.+|++ ..++.+|++++
T Consensus 340 ~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~~---~~~~~~--~~~t~~ei~~~ 414 (426)
T PRK00062 340 KKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQF---EAGFVS--AAHTDEDIEKT 414 (426)
T ss_pred HHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCCc---Cceeee--ccCCHHHHHHH
Confidence 232 1 11111110 00123468899999998853 344 346765 69999999999
Q ss_pred HHHHHHHHHH
Q psy8733 599 VKFMKEFRHK 608 (621)
Q Consensus 599 ~~~~~~~~~~ 608 (621)
++-|++.-++
T Consensus 415 ~~~l~~~l~~ 424 (426)
T PRK00062 415 LEAARKAFAA 424 (426)
T ss_pred HHHHHHHHHh
Confidence 9999877653
No 428
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=71.14 E-value=4.5 Score=44.79 Aligned_cols=158 Identities=13% Similarity=0.109 Sum_probs=98.4
Q ss_pred hhHHHHHhhccc-----ccccCCcEEeeecHhHhhhcCCCC-----------Cceee---eee-cccCCCccCCCchhHH
Q psy8733 447 FFFGVIIAGAQK-----NIGPAGITVVIVREDLLEYALPIT-----------PTVFH---FKI-NADNNSVYNTPPTFVV 506 (621)
Q Consensus 447 ~~~~~~~a~~qk-----~~GpaGl~v~iv~~~~l~~~~~~~-----------p~~~~---y~~-~~~~~s~~nTP~~~~i 506 (621)
+..|++.+++|| ++|..|++++++++++++...+.+ ...+. ... .-...++.|++....+
T Consensus 254 ~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (447)
T PRK00451 254 YGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQAL 333 (447)
T ss_pred CCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHH
Confidence 446788888898 465449999999999987632110 00000 000 0112344444433333
Q ss_pred H--HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCC-------ccccc-CCCCCcccHHHHHHHHHccCcc---c
Q psy8733 507 H--VIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK-------FYECP-VQAGFPLDELFLKEAKAHNMIQ---L 573 (621)
Q Consensus 507 y--~~~~vl~~~~~~gg~~~~~~~~~~ka~~lY~~id~~~~-------~~~~~-v~~~~~~~~~~~~~~~~~~i~~---~ 573 (621)
. .....++++.+. |++++.++..++++.+++.+.+.++ ||... +.-. .-..+|.+.+.++||+. +
T Consensus 334 ~~~aaa~~l~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~v~~~-~~~~~~~~~L~~~gi~~~~~~ 411 (447)
T PRK00451 334 NALAAAIYMSLLGPE-GLRELAEQNHQKAHYLAERLAEIGGVELFDGPFFNEFVVRLP-KPAEEVNEALLEKGILGGYDL 411 (447)
T ss_pred HHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHhhcCCEEecCCCeEEEEEEecC-CCHHHHHHHHHhcCCCCCccc
Confidence 3 222235566444 6999999999999999999987542 22210 1100 12367899999999873 2
Q ss_pred cCCC--CCCccceeeccCCCHHHHHHHHHHHHHHH
Q psy8733 574 KGHR--LVGGIRASIYNAITVDEAVILVKFMKEFR 606 (621)
Q Consensus 574 ~g~~--~~~~~r~~~~~a~~~~~~~~l~~~~~~~~ 606 (621)
..|. ..+.+|++.-.-.|.|+++.|++.|+++.
T Consensus 412 ~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 412 GRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred ccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 2222 24679999987899999999999998753
No 429
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=70.27 E-value=1.1e+02 Score=34.58 Aligned_cols=137 Identities=16% Similarity=0.199 Sum_probs=81.8
Q ss_pred CCCCCceEEEEeccccccccccc-c--cc---ccCCCcEEEecccc---cC-CCcccccccceEEeccccccC------C
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFN-Y--IP---DSQGIPLVSDMSSN---FL-SRKFDVSKFGVIIAGAQKNIG------P 332 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p-~--i~---~~~g~llvvDavSs---~G-~~pIDv~~~gvl~asaqK~lG------P 332 (621)
++++++.++.+|.-+| .|+--. + |+ +++|..+-.|++-- +| ++|=|+- +|++=.--||.|. -
T Consensus 200 k~~~~~AalMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G-~DV~HlNLHKTF~iPHGGGG 277 (496)
T COG1003 200 KAEDNLAALMITNPST-LGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMG-FDVVHLNLHKTFCIPHGGGG 277 (496)
T ss_pred HhccceeEEEeccCcc-cccchhhHHHHHHHHHHcCCEEEecCcchhhhhccccccccc-cceEEeecccccccCCCCCC
Confidence 4667888888887766 477543 3 33 47899999998632 11 2333331 2477777888772 5
Q ss_pred CccEEEEEchhHHhhhCCCC---C--c-eeecccc---ccCCCccCCchHHHHHHHHHHHHHHHhhC--CHHHHHHHHHH
Q psy8733 333 AGITVVIVREDLLEYALPIT---P--T-VFHFKIN---ADNNSVYNTPPTFVVHVIQRVFAWIKRQG--GLAKMEQNSLQ 401 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~---P--~-~ld~~~~---~~~~s~~~TP~v~~I~aL~~aL~~i~~~g--Gl~~i~~r~~~ 401 (621)
||.|-+.|+..+...+.... + . .+++... ..-...|+.. -.|-.+.-||.-.| |+....+...-
T Consensus 278 PG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~-----~il~~a~~YI~~mG~~GL~~ase~AvL 352 (496)
T COG1003 278 PGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSA-----SILPIAWAYIRMMGADGLKQASEVAVL 352 (496)
T ss_pred CCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcc-----hHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 78999999988865442210 0 0 1111110 0011223333 23344566666543 78888888888
Q ss_pred HHHHHHHHHHc
Q psy8733 402 KSVLLYQEIDN 412 (621)
Q Consensus 402 la~~L~e~L~~ 412 (621)
.+.|+...|+.
T Consensus 353 NANYia~rL~~ 363 (496)
T COG1003 353 NANYIARRLKG 363 (496)
T ss_pred hHHHHHHHhhh
Confidence 89999998885
No 430
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=69.61 E-value=8.5 Score=41.54 Aligned_cols=153 Identities=12% Similarity=0.080 Sum_probs=94.1
Q ss_pred hHHHHHhhccccccc-----CCcEEeeecHhHhhhcCCCCC---------cee--eee---ecc---cCCCccCCCchhH
Q psy8733 448 FFGVIIAGAQKNIGP-----AGITVVIVREDLLEYALPITP---------TVF--HFK---INA---DNNSVYNTPPTFV 505 (621)
Q Consensus 448 ~~~~~~a~~qk~~Gp-----aGl~v~iv~~~~l~~~~~~~p---------~~~--~y~---~~~---~~~s~~nTP~~~~ 505 (621)
..|++.+|.+|-++| .|++++.+++++++...+... .-+ ++. .+. ...+...|++.+.
T Consensus 211 ~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~ 290 (398)
T cd00613 211 GADIVVGNLQKTGVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALL 290 (398)
T ss_pred CCCEEEeeccccCCCCCCCCCceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHH
Confidence 468888999998855 568999999998875322100 000 000 000 0111122333344
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCCccccc-----------CCCC-CcccHHHHHHHHHccCccc
Q psy8733 506 VHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECP-----------VQAG-FPLDELFLKEAKAHNMIQL 573 (621)
Q Consensus 506 iy~~~~vl~~~~~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~-----------v~~~-~~~~~~~~~~~~~~~i~~~ 573 (621)
...+...++++.+. |++.+.++.+++++.+++.+.+..... .+ +... .....+|.+.+.++||...
T Consensus 291 ~~~a~~~l~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~~gi~~~ 368 (398)
T cd00613 291 ALMAAMYIVYLGPE-GLKEIAERAHLNANYLAKRLKEVGGVL-PFNGPFFHEFVLRLPPLYGIRAEDLAKALIDGGFHAP 368 (398)
T ss_pred HHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCeeEEEEEEcCCcchHHHHHHHHhhhhcCcccc
Confidence 44555556666443 688899999999999999998754321 11 1100 0123458888889998743
Q ss_pred cCC-CCCCccceeeccCCCHHHHHHHHHHH
Q psy8733 574 KGH-RLVGGIRASIYNAITVDEAVILVKFM 602 (621)
Q Consensus 574 ~g~-~~~~~~r~~~~~a~~~~~~~~l~~~~ 602 (621)
.-+ ...+.||++.-.-+|.||++.|++.|
T Consensus 369 ~~~~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 369 TMYLPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred ccccCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 211 12467999999999999999998753
No 431
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=69.23 E-value=34 Score=38.21 Aligned_cols=127 Identities=13% Similarity=0.145 Sum_probs=73.7
Q ss_pred CceEEEEecc-cccccccccc---------ccccCCCcEEEecccc-cCCCcc---cccccc----eEEeccccccC--C
Q psy8733 273 EASYLYYCDN-ETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSRKF---DVSKFG----VIIAGAQKNIG--P 332 (621)
Q Consensus 273 ~t~~V~~thn-ET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~pI---Dv~~~g----vl~asaqK~lG--P 332 (621)
+..+|.+-.. ....|+..+- +++++|+++|+|=++. +| +.= -.+.+| +++. -|.+| -
T Consensus 204 ~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~G-rtG~~fa~~~~gv~PDi~t~--gK~l~gG~ 280 (428)
T PRK07986 204 EIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFG-RTGKLFACEHAGIAPDILCL--GKALTGGT 280 (428)
T ss_pred cEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCc-cCCCeeeecccCCCCCEEEe--chhhhCCc
Confidence 4455554332 4445665432 4568999999999974 32 211 112333 4543 58873 1
Q ss_pred CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 333 AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
-=++.+..++++.+.+.+..+.. ....++|+ -|....++..++|+.+.+. + +.++.+++.+++++.|.+
T Consensus 281 ~p~~av~~~~~i~~~~~~~~~~~------~~~~~T~~-g~p~~~aaa~a~L~~i~~~-~---~~~~~~~~g~~l~~~l~~ 349 (428)
T PRK07986 281 MTLSATLTTREVAETISNGEAGC------FMHGPTFM-GNPLACAVANASLSLLESG-D---WQQQVAAIEAQLREELAP 349 (428)
T ss_pred ccCcchhchHHHHHHhhcCCCCc------cccCCCCC-cCHHHHHHHHHHHHHHHhC-C---HHHHHHHHHHHHHHHHHH
Confidence 12466778888876653211000 01234554 3455667777889999875 3 466777788888888876
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
+
T Consensus 350 l 350 (428)
T PRK07986 350 L 350 (428)
T ss_pred H
Confidence 5
No 432
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=67.44 E-value=7 Score=41.12 Aligned_cols=143 Identities=13% Similarity=0.115 Sum_probs=95.5
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
.|++..|..|.+|+.| +.++.++++++..... ........|++...++.+-..|+.+.+ .+.+.++
T Consensus 193 ~~i~~~s~sK~~~~~g-G~i~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~ 258 (349)
T cd06454 193 VDIIMGTLGKAFGAVG-GYIAGSKELIDYLRSY----------ARGFIFSTSLPPAVAAAALAALEVLQG---GPERRER 258 (349)
T ss_pred CcEEEeechhhhcccC-CEEECCHHHHHHHHHh----------chhhhccCCCCHHHHHHHHHHHHHHhc---CHHHHHH
Confidence 4667788999999776 5677788887653211 111111235666777777788887765 4677888
Q ss_pred HHHHHHHHHHHHhccC--------CcccccCCCCCcccHHHHHHHHHccCcccc-CCCC----CCccceeeccCCCHHHH
Q psy8733 529 SLQKSVLLYQEIDNSD--------KFYECPVQAGFPLDELFLKEAKAHNMIQLK-GHRL----VGGIRASIYNAITVDEA 595 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~--------~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~-g~~~----~~~~r~~~~~a~~~~~~ 595 (621)
..+..+.+++.+.+.. +++-+.+.+......+|.+.+.++||.... +|.. .+.||++.-..++.+++
T Consensus 259 ~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i 338 (349)
T cd06454 259 LQENVRYLRRGLKELGFPVGGSPSHIIPPLIGDDPAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDI 338 (349)
T ss_pred HHHHHHHHHHHHHhcCCcccCCCCCcEEEEeCCChHHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHH
Confidence 9999999999987642 110000000011345688889999998654 3321 35699998777999999
Q ss_pred HHHHHHHHHH
Q psy8733 596 VILVKFMKEF 605 (621)
Q Consensus 596 ~~l~~~~~~~ 605 (621)
+++++.|+++
T Consensus 339 ~~~~~~l~~~ 348 (349)
T cd06454 339 DRLLEALKEV 348 (349)
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 433
>PRK08297 L-lysine aminotransferase; Provisional
Probab=67.17 E-value=28 Score=38.99 Aligned_cols=126 Identities=11% Similarity=0.125 Sum_probs=68.5
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCCc--cccccc----ceEEeccccccCCCcc
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSRK--FDVSKF----GVIIAGAQKNIGPAGI 335 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~p--IDv~~~----gvl~asaqK~lGP~Gl 335 (621)
.++.+|.+-......|+..|- +++++|+++|+|=+|+ +|..- .-.+.+ |+++. -|.++ +
T Consensus 224 ~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~---~ 298 (443)
T PRK08297 224 HDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAF--GKKTQ---V 298 (443)
T ss_pred CcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEEe--ccccc---c
Confidence 456666665554555666441 4568999999999985 54321 111122 35554 36663 3
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+.+++++++.+.... .+. ......++++-.| .+..+..++|+.+.+. ++.++.+++.+++++.|+++
T Consensus 299 ~a~l~~~~i~~~~~~----~~~--~~~~~~~T~~gnp-l~~aaa~a~L~~l~~~----~l~~~~~~~g~~l~~~L~~l 365 (443)
T PRK08297 299 CGIMAGRRVDEVEDN----VFA--VSSRINSTWGGNL-VDMVRARRILEVIEED----GLVENAARQGEYLLARLEEL 365 (443)
T ss_pred cceecchHHHHhhhh----hcc--CccccCCCCCccH-HHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHH
Confidence 444566554321110 000 0011235564434 4455667788888765 34556666777777777654
No 434
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=66.52 E-value=29 Score=37.15 Aligned_cols=133 Identities=10% Similarity=0.038 Sum_probs=77.0
Q ss_pred HHHhhcccccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 451 VIIAGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 451 ~~~a~~qk~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
++..|-=|.+|.+| ++.++..+++++.. +..... ..-++|.+.-.++...|+ +..-++.+.+.
T Consensus 216 i~~~S~SK~~~~~GlRiG~i~~~~~~~~~~----------~~~~~~--~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~ 280 (364)
T PRK07865 216 LAVHSLSKQSNLAGYRAGFVAGDPALVAEL----------LEVRKH--AGMMVPAPVQAAMVAALG---DDAHVREQRER 280 (364)
T ss_pred EEEeechhccCCCceeeEEEecCHHHHHHH----------HHHHHh--cCCCcCHHHHHHHHHHhC---CHHHHHHHHHH
Confidence 34456678888776 56677777777653 111111 111334454454444443 32235666777
Q ss_pred HHHHHHHHHHHHhccC--------CcccccCCCCCcccHHHHHHHHHccCccccCC--CC--CCccceeeccCCCHHHHH
Q psy8733 529 SLQKSVLLYQEIDNSD--------KFYECPVQAGFPLDELFLKEAKAHNMIQLKGH--RL--VGGIRASIYNAITVDEAV 596 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~--------~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~--~~--~~~~r~~~~~a~~~~~~~ 596 (621)
.+++.+.+++.+.... +||... +- ..-...+.+.++++|+...-|. +. .+.||++.-. +.|+++
T Consensus 281 ~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~--~~~~~~ 356 (364)
T PRK07865 281 YARRRAVLRPALEAAGFRVDHSEAGLYLWA-TR-GEDCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTA--TDERIA 356 (364)
T ss_pred HHHHHHHHHHHHHHcCCcccCCCccEEEEE-eC-CCCHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecC--CHHHHH
Confidence 7888899999987631 222111 10 0123457788899999865543 32 4569999743 577777
Q ss_pred HHHHHH
Q psy8733 597 ILVKFM 602 (621)
Q Consensus 597 ~l~~~~ 602 (621)
+.++-|
T Consensus 357 ~~~~~l 362 (364)
T PRK07865 357 AAVERL 362 (364)
T ss_pred HHHHHh
Confidence 776655
No 435
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=66.10 E-value=11 Score=41.16 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=96.2
Q ss_pred HHHHHhhccccc-ccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 449 FGVIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 449 ~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
.|++..|.+|.+ ||-|-.++.-+++++++... ......++||+...+..++..+..+.+. +++.+.+
T Consensus 219 ~di~~~S~~K~l~g~~gg~i~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~aa~~~a~~~~~~~-~~~~~~~ 286 (416)
T PRK00011 219 ADVVTTTTHKTLRGPRGGLILTNDEELAKKINS-----------AVFPGIQGGPLMHVIAAKAVAFKEALEP-EFKEYAQ 286 (416)
T ss_pred CcEEEecCCcCCCCCCceEEEeCCHHHHHHHHH-----------HhCccccCCccHHHHHHHHHHHHHHHhh-hHHHHHH
Confidence 478889999999 57776555545777765321 1112235677666666666666555443 4788889
Q ss_pred HHHHHHHHHHHHHhccCCc-----------ccccCCCCCc-ccHHHHHHHHHccCccccCCCC--------CCccceeec
Q psy8733 528 NSLQKSVLLYQEIDNSDKF-----------YECPVQAGFP-LDELFLKEAKAHNMIQLKGHRL--------VGGIRASIY 587 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~~~-----------~~~~v~~~~~-~~~~~~~~~~~~~i~~~~g~~~--------~~~~r~~~~ 587 (621)
+.++.++.+++.|++. +| +-..+. +.. ....+.+.++++||....+|.. .+++|++..
T Consensus 287 ~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~ 364 (416)
T PRK00011 287 QVVKNAKALAEALAER-GFRVVSGGTDNHLVLVDLR-SKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTP 364 (416)
T ss_pred HHHHHHHHHHHHHHhC-CCeeeecCCCCeEEEEeCc-ccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCH
Confidence 9999999999999864 22 111111 111 2355888899999987654422 345998653
Q ss_pred c----CCCHHHHHHHHHHHHHHHH
Q psy8733 588 N----AITVDEAVILVKFMKEFRH 607 (621)
Q Consensus 588 ~----a~~~~~~~~l~~~~~~~~~ 607 (621)
. .++.||++.+++.|+++..
T Consensus 365 ~~~~~~~t~~di~~l~~~l~~~~~ 388 (416)
T PRK00011 365 AITTRGFKEAEMKEIAELIADVLD 388 (416)
T ss_pred HHhhcCcCHHHHHHHHHHHHHHHh
Confidence 3 6789999999999999865
No 436
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=65.26 E-value=39 Score=36.71 Aligned_cols=136 Identities=13% Similarity=0.197 Sum_probs=78.0
Q ss_pred hhcccccccCCcEEe--ee---cHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHH--H-h-cCChHH
Q psy8733 454 AGAQKNIGPAGITVV--IV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWI--K-R-QGGLAK 524 (621)
Q Consensus 454 a~~qk~~GpaGl~v~--iv---~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~--~-~-~gg~~~ 524 (621)
.|-=|.+|++|+-+- ++ .++.+++... ..+. .....+.+||.+...++...|+.= . + .-=++.
T Consensus 242 ~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 313 (396)
T PRK09257 242 SSFSKNFGLYGERVGALSVVAEDAEEADRVLS------QLKA--TIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEE 313 (396)
T ss_pred EEcCCcCccccccceeEEEEeCCHHHHHHHHH------HHHH--HhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344578898887663 32 3343322100 0111 112355667777766665555310 0 0 012456
Q ss_pred HHHHHHHHHHHHHHHHhccC--CcccccCCCC-----CcccHH-HHHHHHHccCccccCCCCCCccceeeccCCCHHHHH
Q psy8733 525 MEQNSLQKSVLLYQEIDNSD--KFYECPVQAG-----FPLDEL-FLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAV 596 (621)
Q Consensus 525 ~~~~~~~ka~~lY~~id~~~--~~~~~~v~~~-----~~~~~~-~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~ 596 (621)
+.++-++|.+.+++.+.+.. +.+.+...++ -+++.. +.+.++++|+..... | |++. -+++.++++
T Consensus 314 ~r~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~~~~~~~l~~~~~V~~~p~----~--ri~~-~~~~~~~i~ 386 (396)
T PRK09257 314 MRERIKAMRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLTPEQVDRLREEFGVYAVGS----G--RINV-AGLNESNID 386 (396)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccccccceEEEecCCCHHHHHHHHHcCCEEEcCC----C--eEEE-eeCCHHHHH
Confidence 77888999999999998752 1122222221 135544 466668889977652 3 7775 559999999
Q ss_pred HHHHHHHH
Q psy8733 597 ILVKFMKE 604 (621)
Q Consensus 597 ~l~~~~~~ 604 (621)
.+++-|++
T Consensus 387 ~~~~~i~~ 394 (396)
T PRK09257 387 YVAEAIAA 394 (396)
T ss_pred HHHHHHHh
Confidence 99988764
No 437
>PLN02397 aspartate transaminase
Probab=64.97 E-value=50 Score=36.54 Aligned_cols=138 Identities=14% Similarity=0.188 Sum_probs=78.0
Q ss_pred hhcccccccCCcEEee----e-cHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHH---HHh-cCChHH
Q psy8733 454 AGAQKNIGPAGITVVI----V-REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW---IKR-QGGLAK 524 (621)
Q Consensus 454 a~~qk~~GpaGl~v~i----v-~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~---~~~-~gg~~~ 524 (621)
.|-=|.+|++|+-+-. . .++++++... . .+. . ...++..+|++.-+++...|+. .++ .--++.
T Consensus 265 ~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~---~---~~~-~-~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~ 336 (423)
T PLN02397 265 QSYAKNMGLYGERVGALSVVCKSADVAVRVKS---Q---LKL-I-ARPMYSNPPIHGASIVATILGDPELFSEWTKELKG 336 (423)
T ss_pred EECcccCCCccccceEEEEEeCCHHHHHHHHH---H---HHH-H-HhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455888988875432 3 3554432100 0 011 1 1123333566655555444421 000 001567
Q ss_pred HHHHHHHHHHHHHHHHhccCCc---ccccCCCC-----CcccHHHHHHH-HHccCccccCCCCCCccceeeccCCCHHHH
Q psy8733 525 MEQNSLQKSVLLYQEIDNSDKF---YECPVQAG-----FPLDELFLKEA-KAHNMIQLKGHRLVGGIRASIYNAITVDEA 595 (621)
Q Consensus 525 ~~~~~~~ka~~lY~~id~~~~~---~~~~v~~~-----~~~~~~~~~~~-~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~ 595 (621)
+.++-+++.+.+++.+.+. ++ +.+...++ -+++.+|.+.+ +++|+.... ..|++. =+.+.+.+
T Consensus 337 ~~~~~~~rr~~l~~~L~~~-~~~~~~~~~~p~gg~fl~~~l~~~~~~~Ll~~~~V~v~~------~~Ri~~-~~~~~~~i 408 (423)
T PLN02397 337 MADRIISMRQKLYDALEAR-GSPGDWSHITKQIGMFSFTGLNKEQVDRMTKEYHIYMTR------DGRISM-AGLSSKNV 408 (423)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCCCCCcccCCceEEEecCCCHHHHHHHHHhCCEEECC------CCeEEE-eeCCHHHH
Confidence 8889999999999999876 22 33322221 12455665554 677888752 128876 44999999
Q ss_pred HHHHHHHHHHHH
Q psy8733 596 VILVKFMKEFRH 607 (621)
Q Consensus 596 ~~l~~~~~~~~~ 607 (621)
+.+++-|++...
T Consensus 409 ~~~~~~i~~~~~ 420 (423)
T PLN02397 409 PYLADAIHAVVT 420 (423)
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 438
>PRK09082 methionine aminotransferase; Validated
Probab=64.95 E-value=18 Score=39.24 Aligned_cols=133 Identities=10% Similarity=0.022 Sum_probs=72.9
Q ss_pred hhcccccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy8733 454 AGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQ 531 (621)
Q Consensus 454 a~~qk~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ 531 (621)
.|-=|.+|.+| ++.++..+++++.. +. +.....++ +|.+.-+++..+++. ...-++.+.+.-++
T Consensus 232 ~S~SK~~~~~G~RiG~iv~~~~l~~~~----------~~-~~~~~~~~-~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~ 297 (386)
T PRK09082 232 SSFGKTYHVTGWKVGYCVAPAALSAEF----------RK-VHQYNTFT-VNTPAQLALADYLRA--EPEHYLELPAFYQA 297 (386)
T ss_pred eechhhccchhhhhhhhhCCHHHHHHH----------HH-HHhhhcCC-CChHHHHHHHHHHhC--ChHHHHHHHHHHHH
Confidence 34457888777 57788888887652 22 12122233 344455555444431 11224556666788
Q ss_pred HHHHHHHHHhccC--------Ccccc-cCCC-CCcccHHHHHH-HHHccCccccC--CCC----CCccceeeccCCCHHH
Q psy8733 532 KSVLLYQEIDNSD--------KFYEC-PVQA-GFPLDELFLKE-AKAHNMIQLKG--HRL----VGGIRASIYNAITVDE 594 (621)
Q Consensus 532 ka~~lY~~id~~~--------~~~~~-~v~~-~~~~~~~~~~~-~~~~~i~~~~g--~~~----~~~~r~~~~~a~~~~~ 594 (621)
+.+.+++.+.... +||.. .+.+ ...-+.+|.+. ++++|+...-| |.. .+.+|++. +.+.|.
T Consensus 298 ~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~--~~~~~~ 375 (386)
T PRK09082 298 KRDRFRAALANSRFKLLPCEGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCF--AKQEET 375 (386)
T ss_pred HHHHHHHHHHhCCCcccCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEe--cCCHHH
Confidence 8899999987531 33333 2211 11124457665 68889985444 421 34599996 446555
Q ss_pred HHHHHHHH
Q psy8733 595 AVILVKFM 602 (621)
Q Consensus 595 ~~~l~~~~ 602 (621)
.+.-++-|
T Consensus 376 l~~~~~rl 383 (386)
T PRK09082 376 LDAAAERL 383 (386)
T ss_pred HHHHHHHH
Confidence 54444433
No 439
>PRK08960 hypothetical protein; Provisional
Probab=64.88 E-value=26 Score=37.99 Aligned_cols=136 Identities=13% Similarity=0.102 Sum_probs=76.8
Q ss_pred HHhhcccccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHH
Q psy8733 452 IIAGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNS 529 (621)
Q Consensus 452 ~~a~~qk~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~ 529 (621)
+..|.-|.+|.+| ++.++..+++++... . ..... .-+++.+.-.++-..|+. ....-+..+.+.-
T Consensus 228 ~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~----------~-~~~~~-~~~~s~~~q~a~~~~l~~-~~~~~l~~~~~~~ 294 (387)
T PRK08960 228 VLNSFSKYFGMTGWRLGWLVAPPAAVPELE----------K-LAQNL-YISASTPAQHAALACFEP-ETLAILEARRAEF 294 (387)
T ss_pred EEeecccccCCcccEEEEEEcCHHHHHHHH----------H-HHhhh-ccCCCHHHHHHHHHHhhc-CcHHHHHHHHHHH
Confidence 4567789999999 888999998886532 1 11111 123455555544444421 0012244556677
Q ss_pred HHHHHHHHHHHhccCCcccccCCC-C---------C--cccHHHHHHH-HHccCccccCCCC-----CCccceeeccCCC
Q psy8733 530 LQKSVLLYQEIDNSDKFYECPVQA-G---------F--PLDELFLKEA-KAHNMIQLKGHRL-----VGGIRASIYNAIT 591 (621)
Q Consensus 530 ~~ka~~lY~~id~~~~~~~~~v~~-~---------~--~~~~~~~~~~-~~~~i~~~~g~~~-----~~~~r~~~~~a~~ 591 (621)
+++.+.+++.+++.. + ...+.+ + . ..+.+|.+.+ +++||....|... .+-||++.=+ +
T Consensus 295 ~~~~~~l~~~L~~~~-~-~~~~~p~g~~f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~--~ 370 (387)
T PRK08960 295 ARRRDFLLPALRELG-F-GIAVEPQGAFYLYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ--S 370 (387)
T ss_pred HHHHHHHHHHHHhcC-C-cCCcCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC--C
Confidence 788899999998753 2 111111 0 0 1235577664 5789987766322 2459999775 5
Q ss_pred HHHHHHHHHHHHH
Q psy8733 592 VDEAVILVKFMKE 604 (621)
Q Consensus 592 ~~~~~~l~~~~~~ 604 (621)
.|..+.-++-|++
T Consensus 371 ~~~l~~al~~l~~ 383 (387)
T PRK08960 371 LPRLQEAVERIAR 383 (387)
T ss_pred HHHHHHHHHHHHH
Confidence 5554444444433
No 440
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=62.59 E-value=29 Score=39.32 Aligned_cols=122 Identities=11% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCCceEEEEecccccccccccc---------ccccCCCcEEEecccc--------cCCCccccc-ccceEEeccccccCC
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN--------FLSRKFDVS-KFGVIIAGAQKNIGP 332 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs--------~G~~pIDv~-~~gvl~asaqK~lGP 332 (621)
..++.+|.+-..-...|+..|- +++++|+++|+|=+|+ +.+...++. +-|+++.| |.+|-
T Consensus 249 ~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~g--K~lg~ 326 (464)
T TIGR00699 249 HKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFS--KKFQT 326 (464)
T ss_pred CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEeh--hhhcc
Q ss_pred CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 333 AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
-|. +++++.+....+ ....+++. .|..+..+..++|+.+.++ ++.++.+++.++|++.|.+
T Consensus 327 gG~---~~~~~~~~~~~~-----------~~~~~T~~-gnp~~~aaa~a~L~~l~~~----~l~~~~~~~g~~l~~~L~~ 387 (464)
T TIGR00699 327 AGY---FFHDPAFRPNKP-----------YRQFNTWM-GDPSRALILREIIQEIKRK----DLLENVAHVGDYLYTGLED 387 (464)
T ss_pred CCc---cccchhccCCCC-----------cccccCCC-CCHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHH
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
+
T Consensus 388 l 388 (464)
T TIGR00699 388 L 388 (464)
T ss_pred H
No 441
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=62.55 E-value=62 Score=35.85 Aligned_cols=59 Identities=7% Similarity=-0.057 Sum_probs=40.1
Q ss_pred CCceEEEEeccccccccccc-c-----ccccCCCcEEEeccccc---------------CCCcccccccc--eEEecccc
Q psy8733 272 PEASYLYYCDNETVDGVEFN-Y-----IPDSQGIPLVSDMSSNF---------------LSRKFDVSKFG--VIIAGAQK 328 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p-~-----i~~~~g~llvvDavSs~---------------G~~pIDv~~~g--vl~asaqK 328 (621)
++..+..+++.+--.|-..| + +++++|++.++-.+=++ |-.|++++..| |++.++||
T Consensus 153 ~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~vqS~dkNF~VPvGga 232 (389)
T PF05889_consen 153 ADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAFVQSTDKNFMVPVGGA 232 (389)
T ss_dssp GGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEEEEEHHHHHCEESSHE
T ss_pred CCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCcceeeeecCCCEEecCCCc
Confidence 44556666665555566666 2 45689999999999999 99998888887 77777777
Q ss_pred cc
Q psy8733 329 NI 330 (621)
Q Consensus 329 ~l 330 (621)
-+
T Consensus 233 i~ 234 (389)
T PF05889_consen 233 IM 234 (389)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 442
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=62.23 E-value=15 Score=39.87 Aligned_cols=146 Identities=12% Similarity=0.118 Sum_probs=94.7
Q ss_pred HHHHHhhccccc-ccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 449 FGVIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 449 ~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
.|++..|.+|.+ ||-|-.++..+++++++... ......+.||+...+..++..++.+.+. +.+...+
T Consensus 215 ~dv~~~s~sK~l~G~~gg~i~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~ 282 (402)
T cd00378 215 ADVVTTTTHKTLRGPRGGLILTRKGELAKKINS-----------AVFPGLQGGPHLHVIAAKAVALKEALEP-EFKAYAK 282 (402)
T ss_pred CcEEEeccccCCCCCCceEEEeccHHHHHHHHH-----------HhCccccCCchHHHHHHHHHHHHHHhhH-HHHHHHH
Confidence 467788999999 68776665555488766421 1112234577666677777767655543 3566777
Q ss_pred HHHHHHHHHHHHHhccCCcccccCC--C--------CC-c-ccHHHHHHHHHccCccccCCC--------CCCccceeec
Q psy8733 528 NSLQKSVLLYQEIDNSDKFYECPVQ--A--------GF-P-LDELFLKEAKAHNMIQLKGHR--------LVGGIRASIY 587 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~~~~~~~v~--~--------~~-~-~~~~~~~~~~~~~i~~~~g~~--------~~~~~r~~~~ 587 (621)
+..++++.+++.+.+. +| ..... . .. . ....+.+.++++||....++- ..++||++.-
T Consensus 283 ~~~~~~~~l~~~L~~~-g~-~~~~~~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~ 360 (402)
T cd00378 283 QVVENAKALAEALKER-GF-KVVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTP 360 (402)
T ss_pred HHHHHHHHHHHHHHhC-CC-eEeecCCCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCH
Confidence 7888999999999875 32 21111 1 11 1 234567778999988754321 1356999663
Q ss_pred ----cCCCHHHHHHHHHHHHHHHHH
Q psy8733 588 ----NAITVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 588 ----~a~~~~~~~~l~~~~~~~~~~ 608 (621)
+.++.+|++.+++.|++....
T Consensus 361 ~~~~~~~~~~di~~~~~~l~~~~~~ 385 (402)
T cd00378 361 AMTTRGMGEEEMEEIADFIARALKD 385 (402)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 467999999999999986653
No 443
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=59.88 E-value=88 Score=34.80 Aligned_cols=78 Identities=15% Similarity=0.265 Sum_probs=39.9
Q ss_pred CCCceEEEE-ecccccccccccc-----cc----ccCCCcEEEecccccCCC----c----ccc----cccc-----eEE
Q psy8733 271 DPEASYLYY-CDNETVDGVEFNY-----IP----DSQGIPLVSDMSSNFLSR----K----FDV----SKFG-----VII 323 (621)
Q Consensus 271 ~~~t~~V~~-thnET~tGv~~p~-----i~----~~~g~llvvDavSs~G~~----p----IDv----~~~g-----vl~ 323 (621)
++..|.+.+ .--+|.+|+.... ++ ...+-.++-|-.=++-+. + +|+ .+-| +.+
T Consensus 170 D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F 249 (425)
T PF12897_consen 170 DPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVF 249 (425)
T ss_dssp STTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEE
T ss_pred CCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEE
Confidence 455666643 3456888988763 11 245566666765555443 1 122 1122 788
Q ss_pred ecccccc-CCCccEEEEEchhHHhhh
Q psy8733 324 AGAQKNI-GPAGITVVIVREDLLEYA 348 (621)
Q Consensus 324 asaqK~l-GP~Glg~livr~~ll~~~ 348 (621)
+|.-|.- .-+|++++.-|++-++..
T Consensus 250 ~STSKITf~GaGva~~aaS~~Nl~~~ 275 (425)
T PF12897_consen 250 ASTSKITFPGAGVAFFAASEANLAWI 275 (425)
T ss_dssp EESTTTS-TTSS-EEEEE-HHHHHHH
T ss_pred ecccccccCCcceeeeecCHHHHHHH
Confidence 8888966 578999999999887654
No 444
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=58.45 E-value=77 Score=33.72 Aligned_cols=129 Identities=15% Similarity=0.187 Sum_probs=74.7
Q ss_pred hcccccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy8733 455 GAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQK 532 (621)
Q Consensus 455 ~~qk~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~k 532 (621)
|-=|.+|.+| ++.++.++++++.... .. +.+ ++|.++-+++..+|+.-.. -.+.++.. .++
T Consensus 201 S~SK~~~l~GlRiG~iv~~~~~i~~~~~----------~~---~~~-~~~~~~q~~~~~~l~~~~~--~~~~~~~~-~~~ 263 (337)
T PRK03967 201 TFSKAFGLAGIRAGYAIANEEIIDALYR----------IK---PPF-SLNILTMKIVRLALDHYDL--IEERIDYI-IKE 263 (337)
T ss_pred cchHhhcchhhhheeeecCHHHHHHHHh----------hc---CCC-CCCHHHHHHHHHHHhCHHH--HHHHHHHH-HHH
Confidence 3346778666 5677788888765321 11 223 4567888888777752110 01222233 334
Q ss_pred HHHHHHHHhcc----CCcccccCCCCCcccHHHHHHHHHccCccccCC-CCCCccceeeccCCCHHHHHHHHHHHHHHHH
Q psy8733 533 SVLLYQEIDNS----DKFYECPVQAGFPLDELFLKEAKAHNMIQLKGH-RLVGGIRASIYNAITVDEAVILVKFMKEFRH 607 (621)
Q Consensus 533 a~~lY~~id~~----~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~-~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~ 607 (621)
.+.+++.+... .++|.. ..-.+.+.+.++||....+. ...+.+|++. - +.++.++|++.|+.+.+
T Consensus 264 r~~l~~~L~~~~~~~~~~~~~-------~~~~~~~~l~~~gi~v~~~~~~~~~~~Ri~~-~--~~~~~~~l~~~l~~~~~ 333 (337)
T PRK03967 264 RERVRRELGEYAYPSDANFLL-------LKLDAYDYLLENGIVVRKLSGRLEGHIRVTV-G--KREENDEFIKALKEIKE 333 (337)
T ss_pred HHHHHHHhccCcCCCCCcEEE-------EhHHHHHHHHHCCEEEEeCCCCCCCeEEEec-C--CHHHHHHHHHHHHHHHH
Confidence 45668777652 122211 22237788888998764332 2256699983 2 56888899999988876
Q ss_pred HcC
Q psy8733 608 KHS 610 (621)
Q Consensus 608 ~~~ 610 (621)
.++
T Consensus 334 ~~~ 336 (337)
T PRK03967 334 GYG 336 (337)
T ss_pred hcC
Confidence 554
No 445
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=57.55 E-value=30 Score=36.92 Aligned_cols=144 Identities=15% Similarity=0.177 Sum_probs=95.7
Q ss_pred hhcccc-cccCCcEEee-ecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy8733 454 AGAQKN-IGPAGITVVI-VREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQ 531 (621)
Q Consensus 454 a~~qk~-~GpaGl~v~i-v~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ 531 (621)
+++.|- ++|.|.+.++ .++++++.-....|.+ ......+...|||...+..+...|+++.+. |++.+.++..+
T Consensus 221 ~s~~K~~~~~~~~G~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~-g~~~~~~~~~~ 295 (373)
T TIGR03812 221 IDPHKMGLSPIPAGGILFRSKSYLKYLSVDAPYL----TVKKQATITGTRSGASAAATYAVIKYLGRE-GYRKIVAECME 295 (373)
T ss_pred ECccccCCCcCCceEEEEeCHHHHhhhcccCccc----CCCCCcceEeechhHHHHHHHHHHHHhCHH-HHHHHHHHHHH
Confidence 566773 3466666555 5677776532111211 111122344689998999998999988644 58888999999
Q ss_pred HHHHHHHHHhccCCc--ccccCCCC----CcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHH
Q psy8733 532 KSVLLYQEIDNSDKF--YECPVQAG----FPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKE 604 (621)
Q Consensus 532 ka~~lY~~id~~~~~--~~~~v~~~----~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~ 604 (621)
-++.|++.+.+.. | +..+..+- ..-...+.+.++++||....+ +..+.||+++-+-++.||++.|++-|++
T Consensus 296 ~~~~l~~~L~~~g-~~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~-~~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 296 NTRYLVEELKKIG-FEPVIEPVLNIVAFEVDDPEEVRKKLRDRGWYVSVT-RCPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred HHHHHHHHHHhCC-CeEEcCCCceEEEEEeCCHHHHHHHHHHCCceeccC-CCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 9999999998763 2 11111110 011246888889999886443 2345799999999999999999998875
No 446
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=54.30 E-value=87 Score=33.97 Aligned_cols=134 Identities=16% Similarity=0.101 Sum_probs=71.3
Q ss_pred HhhcccccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy8733 453 IAGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSL 530 (621)
Q Consensus 453 ~a~~qk~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~ 530 (621)
..|-=|.+|.+| ++.++..+++++... .... .. ...++.+....+-..+. +..-+....++-+
T Consensus 240 ~~S~SK~~~~~GlRiG~~~~~~~l~~~~~----------~~~~-~~-~~~~~~~~q~a~~~~~~---~~~~~~~~~~~~~ 304 (396)
T PRK09147 240 FHSLSKRSNVPGLRSGFVAGDAALLKKFL----------LYRT-YH-GCAMPPAVQAASIAAWN---DEAHVRENRALYR 304 (396)
T ss_pred EeccccccCCccceeeeecCCHHHHHHHH----------HHhh-hc-ccCCCHHHHHHHHHHhc---chhHHHHHHHHHH
Confidence 344556778776 566777777776532 1111 11 12344455444333332 1223556667778
Q ss_pred HHHHHHHHHHhcc-------CCcccccCCCCCcccHHHHHHH-HHccCccccCCC----------CCCccceeeccCCCH
Q psy8733 531 QKSVLLYQEIDNS-------DKFYECPVQAGFPLDELFLKEA-KAHNMIQLKGHR----------LVGGIRASIYNAITV 592 (621)
Q Consensus 531 ~ka~~lY~~id~~-------~~~~~~~v~~~~~~~~~~~~~~-~~~~i~~~~g~~----------~~~~~r~~~~~a~~~ 592 (621)
++.+.+++.+... .++|.-.-- . ..+.+|.+.+ +++|+...-|.. ..+.||++.- .+.
T Consensus 305 ~~~~~~~~~L~~~~~~~~p~~g~f~~~~~-~-~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~--~~~ 380 (396)
T PRK09147 305 EKFDAVTPILAPVLDVQLPDAGFYLWAKV-P-GDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALV--APL 380 (396)
T ss_pred HHHHHHHHHHHHhcCCCCCCeeEEEEEEC-C-CCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEec--CCH
Confidence 8888888887653 111111100 0 1245676665 578998655531 1456999874 356
Q ss_pred HHHHHHHHHHHHH
Q psy8733 593 DEAVILVKFMKEF 605 (621)
Q Consensus 593 ~~~~~l~~~~~~~ 605 (621)
++.++.++-|+++
T Consensus 381 ~~l~~~l~rl~~~ 393 (396)
T PRK09147 381 AECVEAAERIVDF 393 (396)
T ss_pred HHHHHHHHHHHHH
Confidence 6665555555544
No 447
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=52.39 E-value=27 Score=40.13 Aligned_cols=148 Identities=14% Similarity=0.162 Sum_probs=89.2
Q ss_pred HHHHHhhccccc-ccCCcEEeeecH-hHhhhcCCCCCceeeee--ecccCCCccCCCchhHHHHHHHHHHHHHhcCChHH
Q psy8733 449 FGVIIAGAQKNI-GPAGITVVIVRE-DLLEYALPITPTVFHFK--INADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAK 524 (621)
Q Consensus 449 ~~~~~a~~qk~~-GpaGl~v~iv~~-~~l~~~~~~~p~~~~y~--~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~ 524 (621)
.|.+-++++|-+ ||-|.+++++|+ ++++. ....+..+.-. ......+.-.|.|-.. ..+...|+++-.. |++.
T Consensus 324 aDSit~d~HK~l~~P~g~G~llvr~~~~~~~-~~~~~~Yl~~~~~~d~~~~~legsR~~~a-l~lw~aL~~lG~~-G~~~ 400 (522)
T TIGR03799 324 ADSVTIDAHKQLYVPMGAGMVLFKDPALMSA-IEHHAEYILRKGSKDLGSHTLEGSRPGMA-MLVYAGLHIIGRK-GYEL 400 (522)
T ss_pred CCEEEEChhhcCCcCcccEEEEEeCHHHHHH-hccCcchhcCCCCCccccceeecCcchHH-HHHHHHHHHHhHH-HHHH
Confidence 355556789966 599999999985 44432 22222222000 0011122334444333 3578888888655 6999
Q ss_pred HHHHHHHHHHHHHHHHhccCCcccccCCC------------C--------------------CcccHHHHHHHHHccCcc
Q psy8733 525 MEQNSLQKSVLLYQEIDNSDKFYECPVQA------------G--------------------FPLDELFLKEAKAHNMIQ 572 (621)
Q Consensus 525 ~~~~~~~ka~~lY~~id~~~~~~~~~v~~------------~--------------------~~~~~~~~~~~~~~~i~~ 572 (621)
+.++..+.++.+++.|.+.++| ....++ + ++++..+.+...+.|..-
T Consensus 401 ii~~~~~la~~l~~~L~~~~~~-el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~ 479 (522)
T TIGR03799 401 LIDQSIEKAKYFADLIQQQPDF-ELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSF 479 (522)
T ss_pred HHHHHHHHHHHHHHHHhhCCCe-EEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEE
Confidence 9999999999999999988764 111111 0 113345667777788774
Q ss_pred cc-----C--CCCCC--ccceee-ccCCCHHHHHHHHH
Q psy8733 573 LK-----G--HRLVG--GIRASI-YNAITVDEAVILVK 600 (621)
Q Consensus 573 ~~-----g--~~~~~--~~r~~~-~~a~~~~~~~~l~~ 600 (621)
.. + |+..| -||+++ =|-++.++++.+++
T Consensus 480 vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~ 517 (522)
T TIGR03799 480 VSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILD 517 (522)
T ss_pred EEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHH
Confidence 33 3 32222 389976 46677888887765
No 448
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=51.50 E-value=92 Score=33.75 Aligned_cols=133 Identities=16% Similarity=0.155 Sum_probs=73.5
Q ss_pred hhcccccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy8733 454 AGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQ 531 (621)
Q Consensus 454 a~~qk~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ 531 (621)
.|-=|.+|.+| ++.++..++++++... ++. ... -++|.+..+++-..+++ ..-++...++-++
T Consensus 240 ~S~SK~~~~~GlRvG~~i~~~~l~~~~~~-------~~~----~~~-~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~ 304 (393)
T TIGR03538 240 HSLSKRSNLPGLRSGFVAGDAEILKAFLR-------YRT----YHG-CAMPIPTQLASIAAWND---EQHVRENRALYRE 304 (393)
T ss_pred ecchhhcCCcccceEEEecCHHHHHHHHH-------HHH----hhc-cCcCHHHHHHHHHHhcC---hHHHHHHHHHHHH
Confidence 34446678676 5667777777765321 111 111 12344555554333321 2235666777888
Q ss_pred HHHHHHHHHhccC-------CcccccCCCCCcccHHHHHHH-HHccCccccCCC--------C--CCccceeeccCCCHH
Q psy8733 532 KSVLLYQEIDNSD-------KFYECPVQAGFPLDELFLKEA-KAHNMIQLKGHR--------L--VGGIRASIYNAITVD 593 (621)
Q Consensus 532 ka~~lY~~id~~~-------~~~~~~v~~~~~~~~~~~~~~-~~~~i~~~~g~~--------~--~~~~r~~~~~a~~~~ 593 (621)
|.+.+++.+...- ++|...--+ .-+.+|.+.+ +++|+....|.. . .+.||++.-. +.+
T Consensus 305 ~~~~~~~~L~~~~~~~~p~gg~f~~~~~~--~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~--~~~ 380 (393)
T TIGR03538 305 KFAAVLEILGQVLDLELPDAGFYLWPKVP--GDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA--PLE 380 (393)
T ss_pred HHHHHHHHHHhhCcccCCCeeEEEEEECC--CCHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC--CHH
Confidence 8888999887631 222211000 1235577665 578998655532 1 4569999743 577
Q ss_pred HHHHHHHHHHHH
Q psy8733 594 EAVILVKFMKEF 605 (621)
Q Consensus 594 ~~~~l~~~~~~~ 605 (621)
+.+..++-|++|
T Consensus 381 ~l~~~l~~l~~~ 392 (393)
T TIGR03538 381 ECVEAAERIRSF 392 (393)
T ss_pred HHHHHHHHHHHh
Confidence 777666666554
No 449
>PRK05839 hypothetical protein; Provisional
Probab=51.33 E-value=1.2e+02 Score=32.67 Aligned_cols=133 Identities=12% Similarity=0.097 Sum_probs=74.2
Q ss_pred hhcccccccCCc--EEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy8733 454 AGAQKNIGPAGI--TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQ 531 (621)
Q Consensus 454 a~~qk~~GpaGl--~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ 531 (621)
.|-=|.+|.+|+ +.++..++++++.. . .......++ |.+.-+++...++ ++.=++.+.++.++
T Consensus 228 ~SfSK~~~~~GlRiG~ii~~~~~~~~~~----------~-~~~~~~~~~-~~~~q~~~~~~l~---~~~~~~~~~~~~~~ 292 (374)
T PRK05839 228 NSISKRSSAPGLRSGFIAGDASILKKYK----------A-YRTYLGCAS-PLPLQKAAAVAWL---DDEHAEFFRNIYAK 292 (374)
T ss_pred eccccccCCccceeEEEecCHHHHHHHH----------H-HHhhcCCCC-ChHHHHHHHHHhc---cchHHHHHHHHHHH
Confidence 344567787775 44566677776531 1 111111233 3333333333221 23335566777777
Q ss_pred HHHHHHHHHhcc---CCcccccCCCCCcccHHHHHHHH-HccCccccCC--CC----CCccceeeccCCCHHHHHHHHHH
Q psy8733 532 KSVLLYQEIDNS---DKFYECPVQAGFPLDELFLKEAK-AHNMIQLKGH--RL----VGGIRASIYNAITVDEAVILVKF 601 (621)
Q Consensus 532 ka~~lY~~id~~---~~~~~~~v~~~~~~~~~~~~~~~-~~~i~~~~g~--~~----~~~~r~~~~~a~~~~~~~~l~~~ 601 (621)
+.+.+++.+.-+ .+||.-. + -.-..+|.+.+. ++|+....|. +. .+.||++. +.+.|+++..++-
T Consensus 293 ~~~~~~~~l~~~~p~gg~fi~~-~--~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~--~~~~~~~~~~l~~ 367 (374)
T PRK05839 293 NLKLAREILGITIPPATFYVWL-P--VDNDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIAL--VYDTPKLEKALEI 367 (374)
T ss_pred HHHHHHHhcCCCCCCeeEEEEE-e--CCChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEe--cCCHHHHHHHHHH
Confidence 888888887432 1333321 0 012356777775 5999877663 22 46799998 5678888877777
Q ss_pred HHHHH
Q psy8733 602 MKEFR 606 (621)
Q Consensus 602 ~~~~~ 606 (621)
|+++-
T Consensus 368 l~~~l 372 (374)
T PRK05839 368 IKTYL 372 (374)
T ss_pred HHHHh
Confidence 76653
No 450
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=51.10 E-value=24 Score=37.11 Aligned_cols=137 Identities=15% Similarity=0.161 Sum_probs=89.7
Q ss_pred HHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccC-CCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 450 GVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYN-TPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 450 ~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~n-TP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
+++..|.-|.+|++| +.++.++++++.-. ..... ..++ +++.+.+..+-..++++.. .+.+.++
T Consensus 209 ~i~i~s~sK~~~~~g-G~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~ 273 (360)
T TIGR00858 209 DIQVGTLSKALGSYG-AYVAGSQALIDYLI----------NRART-LIFSTALPPAVAAAALAALELIQE---EPWRREK 273 (360)
T ss_pred cEEEEechhhhhccC-cEEEcCHHHHHHHH----------HhCcc-ceecCCCCHHHHHHHHHHHHHHhh---CHHHHHH
Confidence 455667789999887 67777888876521 11111 1122 2445566666677777763 4677889
Q ss_pred HHHHHHHHHHHHhccCCcccccCCC--------CCc-ccHHHHHHHHHccCccccCC--CC---CCccceeeccCCCHHH
Q psy8733 529 SLQKSVLLYQEIDNSDKFYECPVQA--------GFP-LDELFLKEAKAHNMIQLKGH--RL---VGGIRASIYNAITVDE 594 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~~v~~--------~~~-~~~~~~~~~~~~~i~~~~g~--~~---~~~~r~~~~~a~~~~~ 594 (621)
.+++.+.+++.|++.+ + ...... ... ...+|.+.+.++||+...+. +. .+.+|++.=..++.+|
T Consensus 274 ~~~~~~~l~~~L~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~ 351 (360)
T TIGR00858 274 LLALIARLRAGLEALG-F-TLMPSCTPIVPVIIGDNASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGD 351 (360)
T ss_pred HHHHHHHHHHHHHHcC-C-ccCCCCCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHH
Confidence 9999999999998753 2 111011 111 24568899999999975422 11 2469999988899999
Q ss_pred HHHHHHHHH
Q psy8733 595 AVILVKFMK 603 (621)
Q Consensus 595 ~~~l~~~~~ 603 (621)
++.+++.|+
T Consensus 352 i~~~l~~l~ 360 (360)
T TIGR00858 352 IDRLAEALK 360 (360)
T ss_pred HHHHHHhhC
Confidence 999998763
No 451
>PRK07046 aminotransferase; Validated
Probab=49.46 E-value=1.9e+02 Score=32.59 Aligned_cols=134 Identities=11% Similarity=0.015 Sum_probs=75.1
Q ss_pred cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccC
Q psy8733 465 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 544 (621)
Q Consensus 465 l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ka~~lY~~id~~~ 544 (621)
++.++.|+++.+...+...... .......+||+ .|.++.-..--+|+-+++.+-.+.++++-+.=.+.|-+.+++.+
T Consensus 293 i~av~g~~~i~~~~~~~~~~~~--~~~~~~~~T~~-gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~ 369 (453)
T PRK07046 293 CAVYGFSAELAERAQAAKASAP--PGHSGIGTTLS-ANALAMAAMRATLAEVMTEAAYAHMLALAARLAAGLRAVIARHG 369 (453)
T ss_pred ceeeeehHHHHHHHhhccccCC--CCCceeCCCCc-ccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6677889998765321100000 01122345776 55566777777888776655444444444444444555454443
Q ss_pred Ccc---------------cccCCC-------CC-cccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHH
Q psy8733 545 KFY---------------ECPVQA-------GF-PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKF 601 (621)
Q Consensus 545 ~~~---------------~~~v~~-------~~-~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~ 601 (621)
+. ..++.. .+ ++...|...+.++|+.... . .+.+|++ |+|+.+|++.+++.
T Consensus 370 -~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~-~--~~~~~~~--p~~t~~did~~~~~ 443 (453)
T PRK07046 370 -LPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITP-F--HNMMLVC--PATTAADVDRLVAA 443 (453)
T ss_pred -CCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEec-c--cCcEEEe--CCCCHHHHHHHHHH
Confidence 11 101100 01 1334577788899988653 1 2346665 78999999999998
Q ss_pred HHHHHH
Q psy8733 602 MKEFRH 607 (621)
Q Consensus 602 ~~~~~~ 607 (621)
+++.-+
T Consensus 444 ~~~~l~ 449 (453)
T PRK07046 444 FDACLG 449 (453)
T ss_pred HHHHHH
Confidence 877654
No 452
>PLN03032 serine decarboxylase; Provisional
Probab=49.02 E-value=41 Score=36.98 Aligned_cols=143 Identities=11% Similarity=0.154 Sum_probs=82.1
Q ss_pred HHHHHhhcccccc-cCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 449 FGVIIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 449 ~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
.|.+-.++.|-+| |-|.+++++|+..++.-.. -+..+ .. .....--|-|-+....+-..|+.+=. .|..++-+
T Consensus 225 vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~-~~~Yl---~~-~d~ti~gSR~g~~~l~~w~~l~~~G~-~g~~~~~~ 298 (374)
T PLN03032 225 IGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQ-NVEYL---NS-RDATIMGSRNGHAPLYLWYTLRRKGY-RGIKRDVQ 298 (374)
T ss_pred CcEEEECcccccCCCcCeEEEEEEchhhHhhcc-CCccc---CC-CCCcccCCCchHHHHHHHHHHHHhCH-HHHHHHHH
Confidence 5677889999999 9999999999988754221 12222 11 12233344443333333334544422 36888889
Q ss_pred HHHHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCC---CCccceeeccCCCHHHHHHHHHHHH
Q psy8733 528 NSLQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRL---VGGIRASIYNAITVDEAVILVKFMK 603 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~---~~~~r~~~~~a~~~~~~~~l~~~~~ 603 (621)
+..+.++.+++.|.+.+ +. ...++... .-.|..-. .+.+. +||.. .+.+|+.+-|-++.+.++++++=|+
T Consensus 299 ~~~~~a~~l~~~l~~~~-~~-~~~~p~~~-~V~f~~~~--~~~~~-~~w~l~~~~~~~hi~vm~~~~~~~id~fi~dl~ 371 (374)
T PLN03032 299 HCMRNAHYLKDRLTEAG-LT-CRLNELSS-TVVFERPM--DEAFI-KKWQLACEGDIAHVVVMPNVTVEKLDEFVEELV 371 (374)
T ss_pred HHHHHHHHHHHHHHhCC-Cc-EEECCCce-EEEEcCCC--cHhHh-heeeecccCCEEEEEECCCCCHHHHHHHHHHHh
Confidence 99999999999998753 32 22222110 00111000 00011 33322 3469999999999877777766554
No 453
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=48.70 E-value=53 Score=34.91 Aligned_cols=149 Identities=16% Similarity=0.173 Sum_probs=98.1
Q ss_pred HHhhcccccc-cCCcEEeeecH-hHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHH
Q psy8733 452 IIAGAQKNIG-PAGITVVIVRE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNS 529 (621)
Q Consensus 452 ~~a~~qk~~G-paGl~v~iv~~-~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~ 529 (621)
+-++.+|..+ |.|.+.+++++ ++++......|.+ ..........||+...++.+...|+.+.+. |++.+.++.
T Consensus 214 ~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~gt~~~~~~~~~~~al~~l~~~-g~~~~~~~~ 288 (371)
T PRK13520 214 ITIDPHKMGLAPIPAGGILFRDESYLDALAVDTPYL----TSKKQATLTGTRSGAGVAATYAVMKYLGRE-GYRKVVERC 288 (371)
T ss_pred EEECCccccCccCCceEEEEcCHHHHHhhcccCccc----cCCCCcceEeeccChHHHHHHHHHhhhcHh-HHHHHHHHH
Confidence 3356778554 67787777654 4655432112221 111122334688888888888889887654 578889999
Q ss_pred HHHHHHHHHHHhccCCc--ccccCCC----CCcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHH
Q psy8733 530 LQKSVLLYQEIDNSDKF--YECPVQA----GFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMK 603 (621)
Q Consensus 530 ~~ka~~lY~~id~~~~~--~~~~v~~----~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~ 603 (621)
.+.++.+++.+++. +| +..++.+ ...-.+++.+.+.++||....+ +..+.||++.-+-+|.||++.|++.|+
T Consensus 289 ~~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~-~~~~~iRis~~~~~t~edi~~~~~~l~ 366 (371)
T PRK13520 289 MENTRWLAEELKER-GFEPVIEPVLNIVAFDDPNPDEVREKLRERGWRVSVT-RCPEALRIVCMPHVTREHIENFLEDLK 366 (371)
T ss_pred HHHHHHHHHHHHhC-CCEEecCCCceEEEEecCCHHHHHHHHHHCCceeccC-CCCCEEEEEEECCCCHHHHHHHHHHHH
Confidence 99999999999875 43 1112111 0112356888888899875443 224569999888899999999999998
Q ss_pred HHHH
Q psy8733 604 EFRH 607 (621)
Q Consensus 604 ~~~~ 607 (621)
++.+
T Consensus 367 ~~~~ 370 (371)
T PRK13520 367 EVKK 370 (371)
T ss_pred HHhh
Confidence 7654
No 454
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=47.67 E-value=2.1e+02 Score=32.66 Aligned_cols=139 Identities=13% Similarity=0.139 Sum_probs=75.0
Q ss_pred hcccccccCCcE--EeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHH---HHhcCChHHHHHHH
Q psy8733 455 GAQKNIGPAGIT--VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW---IKRQGGLAKMEQNS 529 (621)
Q Consensus 455 ~~qk~~GpaGl~--v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~---~~~~gg~~~~~~~~ 529 (621)
|-=|.+|.+|+- .++..++.+... +..-+.++..+.++-+++..+|+. +.+ -+..+.++.
T Consensus 276 S~SK~~glpGlRvG~li~~~~~l~~~-------------~~~~~~~~~vs~~~Q~a~~~~L~d~~~~~~--~l~~~r~~l 340 (496)
T PLN02376 276 SLSKDMGLPGFRVGIVYSFNDSVVSC-------------ARKMSSFGLVSSQTQLMLASMLSDDQFVDN--FLMESSRRL 340 (496)
T ss_pred eccccCCCCcceEEEEEECCHHHHHH-------------HHHHhhcCCCCHHHHHHHHHHhCChhHHHH--HHHHHHHHH
Confidence 445788877654 455544444332 111223445667777777777642 221 245557777
Q ss_pred HHHHHHHHHHHhccC--------Ccccc-cCCCC----Cc--ccHHHHHHH-HHccCccccC--CCC--CCccceeeccC
Q psy8733 530 LQKSVLLYQEIDNSD--------KFYEC-PVQAG----FP--LDELFLKEA-KAHNMIQLKG--HRL--VGGIRASIYNA 589 (621)
Q Consensus 530 ~~ka~~lY~~id~~~--------~~~~~-~v~~~----~~--~~~~~~~~~-~~~~i~~~~g--~~~--~~~~r~~~~~a 589 (621)
.++.+.+.+.+++.. +||.- .+.+. .. .+.+|.+.+ +++|+....| |+. .|-||++.=.
T Consensus 341 ~~r~~~l~~~L~~~gi~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~- 419 (496)
T PLN02376 341 GIRHKVFTTGIKKADIACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFAN- 419 (496)
T ss_pred HHHHHHHHHHHHHCCCcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeC-
Confidence 888888888887542 12211 11110 01 123454444 4568886655 432 5669998643
Q ss_pred CCHHHHHHHHHHHHHHHHHc
Q psy8733 590 ITVDEAVILVKFMKEFRHKH 609 (621)
Q Consensus 590 ~~~~~~~~l~~~~~~~~~~~ 609 (621)
++.+.++.-++-|+++..++
T Consensus 420 ~~~~~l~~al~rl~~~l~~~ 439 (496)
T PLN02376 420 MDDDTLHVALGRIQDFVSKN 439 (496)
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 55666665555555555443
No 455
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=47.64 E-value=1.7e+02 Score=33.03 Aligned_cols=141 Identities=12% Similarity=0.147 Sum_probs=77.7
Q ss_pred hcccccccCCc--EEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHH-hcCChHHHHHHHHH
Q psy8733 455 GAQKNIGPAGI--TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIK-RQGGLAKMEQNSLQ 531 (621)
Q Consensus 455 ~~qk~~GpaGl--~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~-~~gg~~~~~~~~~~ 531 (621)
|-=|.+|.+|+ +.+|..++.+..+. .. -..++.+|.++-+++..+|+.-. ...=++.+.++-++
T Consensus 269 S~SK~~~l~GlRiG~li~~~~~l~~~~---------~~----~~~~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~ 335 (468)
T PLN02450 269 SLSKDLGLPGFRVGAIYSNDEMVVSAA---------TK----MSSFGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQ 335 (468)
T ss_pred eccccCCCCCccEEEEEECCHHHHHHH---------HH----HhhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 44477886764 45555545443221 11 12334456677777666654200 00125667788889
Q ss_pred HHHHHHHHHhccC--------Ccccc-cCCC---CCcc--cHHH-HHHHHHccCccccC--CCC--CCccceeeccCCCH
Q psy8733 532 KSVLLYQEIDNSD--------KFYEC-PVQA---GFPL--DELF-LKEAKAHNMIQLKG--HRL--VGGIRASIYNAITV 592 (621)
Q Consensus 532 ka~~lY~~id~~~--------~~~~~-~v~~---~~~~--~~~~-~~~~~~~~i~~~~g--~~~--~~~~r~~~~~a~~~ 592 (621)
|.+.+++.+++.. +||.- .+.+ .... +.++ .+.++++|+...-| |+. .|.||++.=. ++.
T Consensus 336 rr~~l~~~L~~~gi~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~-~~~ 414 (468)
T PLN02450 336 RQKKLVSGLEAAGIKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFAN-MSE 414 (468)
T ss_pred HHHHHHHHHHHcCCcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecC-CCH
Confidence 9999999998752 22211 1110 0011 1223 34456789986555 333 5679998754 567
Q ss_pred HHHHHHHHHHHHHHHHc
Q psy8733 593 DEAVILVKFMKEFRHKH 609 (621)
Q Consensus 593 ~~~~~l~~~~~~~~~~~ 609 (621)
++.+..++-|+++.++-
T Consensus 415 ~~l~~~l~ri~~~l~~~ 431 (468)
T PLN02450 415 ETLDLAMKRLKSFVESD 431 (468)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 77777777776666543
No 456
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=47.57 E-value=3.6e+02 Score=30.22 Aligned_cols=131 Identities=8% Similarity=0.036 Sum_probs=77.0
Q ss_pred cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccC
Q psy8733 465 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 544 (621)
Q Consensus 465 l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ka~~lY~~id~~~ 544 (621)
++.++.++++.+.-... |. +.......+||.++|.- .-+.-.+|+-+++.+ +-++.+++.+.+.+.+++-.
T Consensus 296 i~av~~~~~i~~~~~~~-~~---~~~~~~~~~T~~~~pl~-~aaa~a~L~~i~~~~----l~~~~~~~g~~l~~~l~~l~ 366 (445)
T PRK09221 296 MGAVIASDEIYDAFMQG-PE---YAIEFFHGYTYSAHPVA-CAAGLATLDIYREED----LFERAAELAPYFEDAVHSLK 366 (445)
T ss_pred ceeeEEcHHHHHhhccC-cc---cccccccccCCCcCHHH-HHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHhhc
Confidence 56788898887653211 11 00011245788876655 555557888887653 34566677777776665432
Q ss_pred Cc-----------ccc-cCCC---CCc-ccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHHHHH
Q psy8733 545 KF-----------YEC-PVQA---GFP-LDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRH 607 (621)
Q Consensus 545 ~~-----------~~~-~v~~---~~~-~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~ 607 (621)
.+ ... ...+ ... ....+.+.+.++|++...+ .+.||++-==.+|.||++.+++-|++--.
T Consensus 367 ~~~~v~~vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~---~~~lr~~Ppl~~t~~eid~~~~~l~~~l~ 442 (445)
T PRK09221 367 GLPHVIDIRNIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYT---GDTIALSPPLIIEKAQIDELVDALGDALR 442 (445)
T ss_pred cCCCEEEEecCceEEEEEEecccccccchHHHHHHHHHHCCeEEeec---CCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 11 100 0110 111 1235778899999986432 24588874445899999999999877543
No 457
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=45.14 E-value=2.1e+02 Score=34.92 Aligned_cols=130 Identities=14% Similarity=0.117 Sum_probs=76.4
Q ss_pred CceEEEEecc-cccccccccc---------ccccCCCcEEEecccccCCC---cccccccc----eEEecccccc--CCC
Q psy8733 273 EASYLYYCDN-ETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSR---KFDVSKFG----VIIAGAQKNI--GPA 333 (621)
Q Consensus 273 ~t~~V~~thn-ET~tGv~~p~---------i~~~~g~llvvDavSs~G~~---pIDv~~~g----vl~asaqK~l--GP~ 333 (621)
+..+|.+-.. -...|++.+- +++++|+++|+|=+++=..+ .+-.+.+| +++.+ |.| |--
T Consensus 584 ~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~~g--KgLtgG~~ 661 (817)
T PLN02974 584 HIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDIACYA--KLLTGGLV 661 (817)
T ss_pred CEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCCCCEEeec--ccccCCCC
Confidence 4555554442 2334777652 45789999999999883322 12222333 66665 888 322
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
=+|.+.+++++.+........ ...-.+++|. -+..+..+..++|+.+.+++=.+++.++..++.+++.+.|
T Consensus 662 Plaa~l~~~~I~~~f~~~~~~-----~~~~hg~Ty~-gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l 732 (817)
T PLN02974 662 PLAATLATEEVFEAFRGPSKL-----DALLHGHSYT-AHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEEL 732 (817)
T ss_pred ccEEEEEcHHHHHhhcccccc-----CCcccCCCCC-cCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence 389999999998755311000 0001234554 3444556667789999886224566666777766666666
No 458
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=44.51 E-value=2.1e+02 Score=30.58 Aligned_cols=132 Identities=11% Similarity=-0.022 Sum_probs=75.5
Q ss_pred hcccccccCCc--EEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy8733 455 GAQKNIGPAGI--TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQK 532 (621)
Q Consensus 455 ~~qk~~GpaGl--~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~k 532 (621)
|-=|.+|.+|+ +.++..++++++- .. .. ...++|.++.+++-..|+. ..=.+.+.++.+++
T Consensus 213 S~SK~~~l~GlRiG~~v~~~~~~~~~----------~~-~~---~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~ 275 (360)
T PRK07392 213 SLTKFYSLPGLRLGYAIAHPDRLQRW----------QQ-WR---DPWPVNGLAAAAAIAALAD---RDFQQQTWAWLPPA 275 (360)
T ss_pred echhhhcCCchheeeeeCCHHHHHHH----------Hh-hC---CCCCCCHHHHHHHHHHhcc---HHHHHHHHHHHHHH
Confidence 34467786654 5566777777552 11 11 1245677777777666642 11123344556677
Q ss_pred HHHHHHHHhccCCcccccCCCC------C-cccHHHHHH-HHHccCccccCCCC----CCccceeeccCCCHHHHHHHHH
Q psy8733 533 SVLLYQEIDNSDKFYECPVQAG------F-PLDELFLKE-AKAHNMIQLKGHRL----VGGIRASIYNAITVDEAVILVK 600 (621)
Q Consensus 533 a~~lY~~id~~~~~~~~~v~~~------~-~~~~~~~~~-~~~~~i~~~~g~~~----~~~~r~~~~~a~~~~~~~~l~~ 600 (621)
.+.+++.+++.+++...+ ..+ . .-+.+|.+. ++++|+....|... .+-||++.=. .++.+.|.+
T Consensus 276 r~~l~~~L~~~~~~~~~~-~~~~fl~~~~~~~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~---~~~~~~l~~ 351 (360)
T PRK07392 276 REALFQGLASLPGLTPLP-SAANFLLVQSQGSALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRT---EAENQRLLE 351 (360)
T ss_pred HHHHHHHHHhCCCcEECC-CCCCEEEEEcCCCHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCC---HHHHHHHHH
Confidence 788999998754432111 110 0 123456655 57789987666533 3459999533 455677777
Q ss_pred HHHHHHH
Q psy8733 601 FMKEFRH 607 (621)
Q Consensus 601 ~~~~~~~ 607 (621)
-|+.+.+
T Consensus 352 al~~~~~ 358 (360)
T PRK07392 352 ALAAILA 358 (360)
T ss_pred HHHHHhh
Confidence 7776543
No 459
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=43.25 E-value=23 Score=37.50 Aligned_cols=130 Identities=14% Similarity=0.203 Sum_probs=84.1
Q ss_pred HhhcccccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy8733 453 IAGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSL 530 (621)
Q Consensus 453 ~a~~qk~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~ 530 (621)
..|..|.+|++| ++.++.+++++++-.+. . +.+ +.+.++.+.+ ++++++.+.++.+.++.+
T Consensus 205 ~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~-----------~--~~~-~~~~~~~~~~---~~~l~~~~~~~~~~~~~~ 267 (346)
T TIGR01141 205 LRTLSKAFGLAGLRIGYAIANAEIIDALNKV-----------R--APF-NLSRLAQAAA---IAALRDDDFIEKTVEEIN 267 (346)
T ss_pred EehhhHhhhchhhhceeeecCHHHHHHHHhc-----------c--CCC-CCCHHHHHHH---HHHhCCHHHHHHHHHHHH
Confidence 356679998777 68888999988763221 0 112 2344455544 445544445777888888
Q ss_pred HHHHHHHHHHhccCCcccccCCCC-----Cc-ccHHHHHHHHHccCccccCCCC---CCccceeeccCCCHHHHHHHHHH
Q psy8733 531 QKSVLLYQEIDNSDKFYECPVQAG-----FP-LDELFLKEAKAHNMIQLKGHRL---VGGIRASIYNAITVDEAVILVKF 601 (621)
Q Consensus 531 ~ka~~lY~~id~~~~~~~~~v~~~-----~~-~~~~~~~~~~~~~i~~~~g~~~---~~~~r~~~~~a~~~~~~~~l~~~ 601 (621)
++.+.+.+.+++.+++-..+..-. .. -.++|.+.+.++||....|... .+.||++. . +.+|+++|++-
T Consensus 268 ~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~-~--~~~~i~~~~~~ 344 (346)
T TIGR01141 268 AERERLYDGLKKLPGLEVYPSDANFVLIRFPRDADALFEALLEKGIIVRDLNSYPGLPNCLRITV-G--TREENDRFLAA 344 (346)
T ss_pred HHHHHHHHHHHhcCCCEECCCcCCEEEEecCCCHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEec-C--CHHHHHHHHHH
Confidence 888899999987655322211100 01 2466888999999987665432 67799993 3 78999998876
Q ss_pred H
Q psy8733 602 M 602 (621)
Q Consensus 602 ~ 602 (621)
|
T Consensus 345 l 345 (346)
T TIGR01141 345 L 345 (346)
T ss_pred h
Confidence 5
No 460
>PRK07337 aminotransferase; Validated
Probab=41.30 E-value=1.4e+02 Score=32.26 Aligned_cols=132 Identities=12% Similarity=0.128 Sum_probs=72.8
Q ss_pred HhhcccccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCC---hHHHHH
Q psy8733 453 IAGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGG---LAKMEQ 527 (621)
Q Consensus 453 ~a~~qk~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg---~~~~~~ 527 (621)
..|.=|.+|.+| ++.++..++++++-. .... .+.-.++.+..+++-..++ .++ +..+.+
T Consensus 227 ~~S~SK~~~~~G~RiG~~~~~~~l~~~l~----------~~~~--~~~~~~s~~~q~~~~~~l~----~~~~~~~~~~~~ 290 (388)
T PRK07337 227 INSFSKYFNMTGWRLGWLVVPEALVGTFE----------KLAQ--NLFICASALAQHAALACFE----PDTLAIYERRRA 290 (388)
T ss_pred EEechhhcCCchhheeeeecCHHHHHHHH----------HHHH--HhccCCChHHHHHHHHHhc----cCchHHHHHHHH
Confidence 346678999888 788899888876521 1111 1122344555555444432 222 445566
Q ss_pred HHHHHHHHHHHHHhccCC---------cccc-cCCC----CCcccHHHHHH-HHHccCccccCC--CC---CCccceeec
Q psy8733 528 NSLQKSVLLYQEIDNSDK---------FYEC-PVQA----GFPLDELFLKE-AKAHNMIQLKGH--RL---VGGIRASIY 587 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~~---------~~~~-~v~~----~~~~~~~~~~~-~~~~~i~~~~g~--~~---~~~~r~~~~ 587 (621)
.-++|.+.+.+.|++... ||.- .+.+ +...+.+|.+. ++++|+....|. +. .|-||++.=
T Consensus 291 ~~~~~r~~~~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~ 370 (388)
T PRK07337 291 EFKRRRDFIVPALESLGFKVPVMPDGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYA 370 (388)
T ss_pred HHHHHHHHHHHHHHhcCCccccCCCeeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEec
Confidence 667788888998876421 1111 0100 00123457655 678899866554 32 356999986
Q ss_pred cCCCHHHHHHHHHHH
Q psy8733 588 NAITVDEAVILVKFM 602 (621)
Q Consensus 588 ~a~~~~~~~~l~~~~ 602 (621)
. +.++.+.-++-|
T Consensus 371 ~--~~~~l~~~l~rl 383 (388)
T PRK07337 371 T--SMSRLEEAVARL 383 (388)
T ss_pred C--CHHHHHHHHHHH
Confidence 4 555544444443
No 461
>PRK06149 hypothetical protein; Provisional
Probab=38.93 E-value=3.8e+02 Score=33.35 Aligned_cols=125 Identities=12% Similarity=0.090 Sum_probs=68.0
Q ss_pred cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH----
Q psy8733 465 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI---- 540 (621)
Q Consensus 465 l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ka~~lY~~i---- 540 (621)
++.++.++++.+.-.. ...-.+|| +-|-.+.-+.--+|+-|++.+ +.++.+++.+.|-+-+
T Consensus 822 l~av~~~~~i~~~~~~----------~~~~~sT~-~gnP~~~aaala~L~~i~~e~----l~~~~~~~G~~l~~~L~~l~ 886 (972)
T PRK06149 822 LGAVITRREIAEALEA----------EGYFFSST-GGSPVSCRIGMAVLDVLREEK----LQENARRVGDHLKARLEALA 886 (972)
T ss_pred eEEEEEcHHHHhhhcc----------CCcccCCC-CCCHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHH
Confidence 5666667666543211 00113555 345555667778888887654 2233333333333333
Q ss_pred hccC--------Ccccc--cCCC----C-C-cccHHHHHHHHHccCccccCCCC-CCccceeeccC--CCHHHHHHHHHH
Q psy8733 541 DNSD--------KFYEC--PVQA----G-F-PLDELFLKEAKAHNMIQLKGHRL-VGGIRASIYNA--ITVDEAVILVKF 601 (621)
Q Consensus 541 d~~~--------~~~~~--~v~~----~-~-~~~~~~~~~~~~~~i~~~~g~~~-~~~~r~~~~~a--~~~~~~~~l~~~ 601 (621)
++++ |++-. .+.+ . + +....|.+.+.++|++.... +. .+.|| +-|. ||.||++.+++-
T Consensus 887 ~~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~-g~~~~vl~--~~Ppl~it~~~id~~~~~ 963 (972)
T PRK06149 887 DRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPT-GDHLNILK--IKPPLCLDRESADFFVDM 963 (972)
T ss_pred HhCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeec-CCCCCEEE--EECCCcCCHHHHHHHHHH
Confidence 3343 11100 0211 0 1 13345889999999986432 21 23454 4687 999999999998
Q ss_pred HHHHHH
Q psy8733 602 MKEFRH 607 (621)
Q Consensus 602 ~~~~~~ 607 (621)
|++.-.
T Consensus 964 l~~~l~ 969 (972)
T PRK06149 964 LDRVLT 969 (972)
T ss_pred HHHHHH
Confidence 887653
No 462
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=38.52 E-value=33 Score=35.55 Aligned_cols=137 Identities=13% Similarity=0.108 Sum_probs=90.1
Q ss_pred HHHHhhcccccccC--CcEEeeecH-hHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHH
Q psy8733 450 GVIIAGAQKNIGPA--GITVVIVRE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKME 526 (621)
Q Consensus 450 ~~~~a~~qk~~Gpa--Gl~v~iv~~-~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~ 526 (621)
+++..|..|.+|.. +++.+++++ ++++.-. .... ..+.+||....+.+...|+-.. -+.+.+.
T Consensus 196 ~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~----------~~~~--~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~ 261 (350)
T cd00609 196 VIVLRSFSKTFGLPGLRIGYLIAPPEELLERLK----------KLLP--YTTSGPSTLSQAAAAAALDDGE--EHLEELR 261 (350)
T ss_pred EEEEeecccccCCcccceEEEecCHHHHHHHHH----------HHHH--hcccCCChHHHHHHHHHHhCcH--HHHHHHH
Confidence 45566788999844 578999999 6665521 1111 1245778888887777766443 3578888
Q ss_pred HHHHHHHHHHHHHHhccCCcccccCCC-C--------Cc-ccHHHHHHHHHccCccccCCCC----CCccceeeccCCCH
Q psy8733 527 QNSLQKSVLLYQEIDNSDKFYECPVQA-G--------FP-LDELFLKEAKAHNMIQLKGHRL----VGGIRASIYNAITV 592 (621)
Q Consensus 527 ~~~~~ka~~lY~~id~~~~~~~~~v~~-~--------~~-~~~~~~~~~~~~~i~~~~g~~~----~~~~r~~~~~a~~~ 592 (621)
++..++++.+.+.+++..... ..+.. + .. ....+.+.++++||....+... ...||++.=.- .
T Consensus 262 ~~~~~~~~~l~~~L~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~--~ 338 (350)
T cd00609 262 ERYRRRRDALLEALKELGPLV-VVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP--E 338 (350)
T ss_pred HHHHHHHHHHHHHHHhcCCcc-ccCCCccEEEEEecCCCChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC--H
Confidence 888999999999998865321 11111 0 11 1234677778889987766543 45588875444 9
Q ss_pred HHHHHHHHHHH
Q psy8733 593 DEAVILVKFMK 603 (621)
Q Consensus 593 ~~~~~l~~~~~ 603 (621)
||++.+++.|+
T Consensus 339 ~~i~~~~~al~ 349 (350)
T cd00609 339 EELEEALERLA 349 (350)
T ss_pred HHHHHHHHHhh
Confidence 99999988775
No 463
>PRK09064 5-aminolevulinate synthase; Validated
Probab=38.49 E-value=42 Score=36.59 Aligned_cols=146 Identities=14% Similarity=0.083 Sum_probs=91.0
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
.|++..+--|.+|++| ++++.++++++.-.. ........+++|....+.+-..++++++. ....++
T Consensus 239 ~div~~t~sKa~g~~G-G~~~~~~~~~~~l~~----------~~~~~~~t~~~~~~~~~aa~~al~~~~~~---~~~~~~ 304 (407)
T PRK09064 239 IDIIEGTLAKAFGVMG-GYIAGSAALVDAVRS----------YAPGFIFTTSLPPAIAAAALASIRHLKES---NEERER 304 (407)
T ss_pred CeEEEEecchhhhccC-ceEecCHHHHHHHHH----------hCccccccCcCCHHHHHHHHHHHHHHhcC---HHHHHH
Confidence 3555667788889877 677788888765211 11111111233445667777889998764 344566
Q ss_pred HHHHHHHHHHHHhccCCc--cc-----ccCCCCCc-ccHHHHHHHH-HccCccccC-CCC----CCccceeeccCCCHHH
Q psy8733 529 SLQKSVLLYQEIDNSDKF--YE-----CPVQAGFP-LDELFLKEAK-AHNMIQLKG-HRL----VGGIRASIYNAITVDE 594 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~--~~-----~~v~~~~~-~~~~~~~~~~-~~~i~~~~g-~~~----~~~~r~~~~~a~~~~~ 594 (621)
..++.+.+.+.+.+. +| +. .++.-.+. ....|.+.+. ++||..... |.. .+.||++.=-.++.||
T Consensus 305 ~~~~~~~l~~~L~~~-g~~~~~~~~~iv~i~~~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~ed 383 (407)
T PRK09064 305 HQERAAKLKAALDAA-GIPVMPNESHIVPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEM 383 (407)
T ss_pred HHHHHHHHHHHHHHc-CCCCCCCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHH
Confidence 777888888888763 21 10 01110111 2345667665 569885432 211 2459999988999999
Q ss_pred HHHHHHHHHHHHHHc
Q psy8733 595 AVILVKFMKEFRHKH 609 (621)
Q Consensus 595 ~~~l~~~~~~~~~~~ 609 (621)
++.|++-|++..++-
T Consensus 384 i~~l~~~l~~~~~~~ 398 (407)
T PRK09064 384 IDHLVEALVEVWARL 398 (407)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999987653
No 464
>KOG0634|consensus
Probab=37.79 E-value=6.5e+02 Score=28.54 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=29.3
Q ss_pred CCceEEE-Eecccccccccccc--------ccccCCCcEEEecccccCCCc
Q psy8733 272 PEASYLY-YCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRK 313 (621)
Q Consensus 272 ~~t~~V~-~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~p 313 (621)
++.++++ +....|.||..... ++++++.++|.|=.=.+...+
T Consensus 202 ~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~ 252 (472)
T KOG0634|consen 202 PKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMN 252 (472)
T ss_pred CCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeecc
Confidence 4555553 56677888998774 567899999999765554443
No 465
>PLN02271 serine hydroxymethyltransferase
Probab=37.71 E-value=2.8e+02 Score=32.56 Aligned_cols=155 Identities=12% Similarity=0.129 Sum_probs=90.4
Q ss_pred HHHHHhhccccc-ccCCcEEeeecHhHhhhcCCC----C-C-ceeeeeecccC--C-CccCCCchhHHHHHHHHHHHHHh
Q psy8733 449 FGVIIAGAQKNI-GPAGITVVIVREDLLEYALPI----T-P-TVFHFKINADN--N-SVYNTPPTFVVHVIQRVFAWIKR 518 (621)
Q Consensus 449 ~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~----~-p-~~~~y~~~~~~--~-s~~nTP~~~~iy~~~~vl~~~~~ 518 (621)
.|++.++..|.| ||-| +++++|++........ . . ..-+|....++ + .+--.|..-.|--+.-.|+++..
T Consensus 352 aDvvt~TTHKtLrGPrG-G~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~ 430 (586)
T PLN02271 352 CDIVTSTTHKSLRGPRG-GIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVAT 430 (586)
T ss_pred CcEEEeCCcccCCCCCc-eEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhC
Confidence 689999999999 7999 9999987643110000 0 0 00001000000 0 11112222236666777777665
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhccCCcccc----------cCCCCC-cc-cHHHHHHHHHccCcccc----CCCC---C
Q psy8733 519 QGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC----------PVQAGF-PL-DELFLKEAKAHNMIQLK----GHRL---V 579 (621)
Q Consensus 519 ~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~----------~v~~~~-~~-~~~~~~~~~~~~i~~~~----g~~~---~ 579 (621)
... .+..++..+-|+.|.+.+.+.. |.. .|+=.. .+ -+..-+.+++.||+.-| |-++ -
T Consensus 431 ~ef-k~Ya~QVv~NAkaLA~~L~~~G--~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~p 507 (586)
T PLN02271 431 PEY-KAYMQQVKKNAQALASALLRRK--CRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNGTISP 507 (586)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHCC--CeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCCCCCCC
Confidence 443 6888899999999999997753 111 111000 11 23355777778887432 1222 6
Q ss_pred Cccceeecc----CCCHHHHHHHHHHHHHHHH
Q psy8733 580 GGIRASIYN----AITVDEAVILVKFMKEFRH 607 (621)
Q Consensus 580 ~~~r~~~~~----a~~~~~~~~l~~~~~~~~~ 607 (621)
++|||+.-- .+..+|++.+++||.+.-+
T Consensus 508 sGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 508 GGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred CcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 789999632 3346999999999988755
No 466
>PRK08354 putative aminotransferase; Provisional
Probab=37.14 E-value=3e+02 Score=28.81 Aligned_cols=46 Identities=26% Similarity=0.356 Sum_probs=33.5
Q ss_pred cHHHHHHHHHccCccccC--CCCCCccceeeccCCCHHHHHHHHHHHHHHH
Q psy8733 558 DELFLKEAKAHNMIQLKG--HRLVGGIRASIYNAITVDEAVILVKFMKEFR 606 (621)
Q Consensus 558 ~~~~~~~~~~~~i~~~~g--~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~ 606 (621)
..+|.+.++++||....| ++..+-||++.- +.++.++|.+-|++++
T Consensus 263 ~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~---~~~~~~~l~~al~~~~ 310 (311)
T PRK08354 263 AEKFVEFLKRNGILVRDCTSFGLPGYIRFSVR---DREENEKLIRALREWR 310 (311)
T ss_pred HHHHHHHHHHCCeEEEecccCCCCCeEEEEeC---CHHHHHHHHHHHHHhh
Confidence 356888999999885544 554577999975 4567777888777654
No 467
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=36.95 E-value=4.1e+02 Score=29.72 Aligned_cols=126 Identities=8% Similarity=0.034 Sum_probs=69.5
Q ss_pred cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH----HHHH
Q psy8733 465 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLL----YQEI 540 (621)
Q Consensus 465 l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ka~~l----Y~~i 540 (621)
++.++.++++.+.-.+ ....-..+||. .|-.+.-..-.+|+-+++..-.+.+ .++.+.+ -+.+
T Consensus 277 ~~av~~~~~i~~~~~~--------~~~~~~~~T~~-g~p~~~aa~la~L~~i~~~~~~~~~----~~~g~~l~~~l~~~~ 343 (433)
T PRK00615 277 AAAVVAHKSIMDHLAP--------EGTIFQAGTLS-GNPLAMAAGKASINLCREQGFYTQL----STLEQNFLSPIEEMI 343 (433)
T ss_pred eeeeeecHHHHhhhcC--------CCCcccCCCCc-ccHHHHHHHHHHHHHHhcccHHHHH----HHHHHHHHHHHHHHH
Confidence 7788889998765321 00011234554 3444466777788877654322222 2333333 2333
Q ss_pred hccCCccc---------------ccCC-------CCCcccHHHHHHHHHccCcccc-CCCCCCccceeeccCCCHHHHHH
Q psy8733 541 DNSDKFYE---------------CPVQ-------AGFPLDELFLKEAKAHNMIQLK-GHRLVGGIRASIYNAITVDEAVI 597 (621)
Q Consensus 541 d~~~~~~~---------------~~v~-------~~~~~~~~~~~~~~~~~i~~~~-g~~~~~~~r~~~~~a~~~~~~~~ 597 (621)
.+. +|-. .+.. .+.+....|.+.+.++|+...- +|... .+=.+||.||++.
T Consensus 344 ~~~-g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~-----~ls~~ht~~did~ 417 (433)
T PRK00615 344 RSQ-GFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFEAS-----FLSSAHSMENLDY 417 (433)
T ss_pred HHc-CCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCcccccc-----ceecCCCHHHHHH
Confidence 321 1110 0100 0112345688999999987543 33321 3445789999999
Q ss_pred HHHHHHHHHHHc
Q psy8733 598 LVKFMKEFRHKH 609 (621)
Q Consensus 598 l~~~~~~~~~~~ 609 (621)
+++-++++.++-
T Consensus 418 ~~~a~~~~~~~~ 429 (433)
T PRK00615 418 AQNVLIDSLEKV 429 (433)
T ss_pred HHHHHHHHHHHH
Confidence 999999988763
No 468
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=36.84 E-value=95 Score=29.74 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=12.8
Q ss_pred HHHHHHhC--CC-CCCEEEEEcCCcch
Q psy8733 103 AALRELLN--VP-NNYKILFLQGGGTG 126 (621)
Q Consensus 103 ~~La~Ll~--~p-~~yeI~f~~gggT~ 126 (621)
+.+.+.+| ++ +..+|+++ .|++.
T Consensus 103 ~~l~~~~g~~v~~~pd~Ivvt-~Ga~~ 128 (153)
T PLN02994 103 NFMAEARGGRVKFDADMIVLS-AGATA 128 (153)
T ss_pred HHHHHHhCCCCccchhheEEc-CCHHH
Confidence 44555545 22 22368776 66888
No 469
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=36.59 E-value=2.5e+02 Score=31.19 Aligned_cols=128 Identities=9% Similarity=0.046 Sum_probs=73.2
Q ss_pred cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhc--
Q psy8733 465 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN-- 542 (621)
Q Consensus 465 l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ka~~lY~~id~-- 542 (621)
++.++.++++.+...- -+ .+... .--.++..+||.......-.+|+-|++.+-++ +..++.+.+.+.+++
T Consensus 259 ~~av~~~~~i~~~~~~-~~--~~~~~-~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~----~~~~~g~~l~~~L~~~~ 330 (431)
T PRK06209 259 VSALAGKREYMELGGL-EH--TDRER-VFLLSTTHGAETHALAAAIATMAIYRDEDVIE----RLHEQGAKLAAGVNEAA 330 (431)
T ss_pred cEEEEEHHHHHhhhcc-cc--cCCCC-ceeeccCCCCCHHHHHHHHHHHHHHhccCHHH----HHHHHHHHHHHHHHHHH
Confidence 6667778887754110 00 00000 01135566788888888999999998765333 334444555544432
Q ss_pred --cC--Cccc------c--cC--CCC-C--c-ccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHH
Q psy8733 543 --SD--KFYE------C--PV--QAG-F--P-LDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKE 604 (621)
Q Consensus 543 --~~--~~~~------~--~v--~~~-~--~-~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~ 604 (621)
.+ ...+ . .+ .+. . . +...+.+.+.++|++. -.++++ .+||.+|++.+++-|++
T Consensus 331 ~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~-------p~l~is--~~ht~~dId~~l~~l~~ 401 (431)
T PRK06209 331 AEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVLM-------PSLVVS--YAHGDADIERTIDAVHG 401 (431)
T ss_pred HhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHHCCccc-------cccccc--ccCCHHHHHHHHHHHHH
Confidence 32 0010 0 11 100 1 1 2335778889999974 236777 69999999999988877
Q ss_pred HHHHc
Q psy8733 605 FRHKH 609 (621)
Q Consensus 605 ~~~~~ 609 (621)
.....
T Consensus 402 ~l~~~ 406 (431)
T PRK06209 402 ALGVY 406 (431)
T ss_pred HHHHH
Confidence 66543
No 470
>KOG1401|consensus
Probab=35.43 E-value=2.2e+02 Score=31.85 Aligned_cols=126 Identities=17% Similarity=0.157 Sum_probs=69.6
Q ss_pred cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhc--
Q psy8733 465 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN-- 542 (621)
Q Consensus 465 l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ka~~lY~~id~-- 542 (621)
++.+++|.+..+.-.+.-| .-.++||+- |.++--+.-.+++|+++ ++.-++...+.+.|++-||+
T Consensus 283 igA~~v~~kV~~~i~~~~~--------l~hg~Tf~g-npLacsa~~~~l~~l~~----~e~~k~vs~~~k~L~~~l~e~~ 349 (433)
T KOG1401|consen 283 IGATGVRDKVAEMISPGDH--------LYHGGTFSG-NPLACSAGIKVLDELKD----PETLKNVSKIGKELRKLLDEYL 349 (433)
T ss_pred eEEEeehHHHHhhcCCCCc--------cccCcccCC-ChhhhhHHHHHHHHHcC----HHHHHHHHHHHHHHHHHHHHHh
Confidence 5678899999877665444 223444443 34556677788999985 44555555555666655554
Q ss_pred --cCCccccc-CCCC-------CcccHHHHHHHHHccCccccCCCC--CCccceee-c-c--CCCHHHHHHHHHHHHH
Q psy8733 543 --SDKFYECP-VQAG-------FPLDELFLKEAKAHNMIQLKGHRL--VGGIRASI-Y-N--AITVDEAVILVKFMKE 604 (621)
Q Consensus 543 --~~~~~~~~-v~~~-------~~~~~~~~~~~~~~~i~~~~g~~~--~~~~r~~~-~-~--a~~~~~~~~l~~~~~~ 604 (621)
.+. -.+- +.+. ......|.+.+++.+.....+-.. +-++|+.= | = .+++|..+.+++-|..
T Consensus 350 ~~~~~-~i~g~~grgl~ig~~~~~p~~~~~d~~~~~~ll~~~~~~~~~~~gv~i~P~~~l~~~~~~E~i~~~l~i~~~ 426 (433)
T KOG1401|consen 350 KKTPN-SICGGVGRGLVIGFEFEGPVYKFADAAREQGLLILTLGKGLLEEGVRIAPIYLLTVEHTPEVIQRLLTILEK 426 (433)
T ss_pred ccCCC-ceeeeeeeEEEEEEEEeechhhhhhhhhhhhHHHHHHhcccccceEEEeccccccccCcHHHHHHHHHHHHH
Confidence 331 1111 2221 123445777777777775544433 45677653 1 1 2335666666555443
No 471
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=34.59 E-value=65 Score=34.52 Aligned_cols=148 Identities=9% Similarity=0.101 Sum_probs=92.8
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
.|++..|..|.+|+.-++.++.++++++.... ........+|++....+.+-..++++.+ .+.+.++
T Consensus 235 ~~i~~~S~sK~~~g~r~G~v~~~~~~~~~l~~----------~~~~~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~ 301 (397)
T PRK06939 235 VDIITGTLGKALGGASGGYTAGRKEVIDWLRQ----------RSRPYLFSNSLAPAIVAASIKVLELLEE---SDELRDR 301 (397)
T ss_pred CcEEEEECHHHhCccCceEEEeCHHHHHHHHH----------hCccccccCCCCHHHHHHHHHHHHHHhc---CHHHHHH
Confidence 34556677888842234788889998866321 1111122345444445555556777753 3678888
Q ss_pred HHHHHHHHHHHHhccC--------CcccccCCCCCcccHHHHHHHHHccCccccC-CC--C--CCccceeeccCCCHHHH
Q psy8733 529 SLQKSVLLYQEIDNSD--------KFYECPVQAGFPLDELFLKEAKAHNMIQLKG-HR--L--VGGIRASIYNAITVDEA 595 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~--------~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g-~~--~--~~~~r~~~~~a~~~~~~ 595 (621)
.+++.+.+++.+++.. .|+..... ......+|.+.+.++||....+ |. . .+.||++.=-.++.|++
T Consensus 302 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i 380 (397)
T PRK06939 302 LWENARYFREGMTAAGFTLGPGEHPIIPVMLG-DAKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQL 380 (397)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCCCCEEEEEEC-CHHHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECCCCCHHHH
Confidence 8999999999998652 11111110 0012456889999999875422 21 1 24589876444789999
Q ss_pred HHHHHHHHHHHHHcC
Q psy8733 596 VILVKFMKEFRHKHS 610 (621)
Q Consensus 596 ~~l~~~~~~~~~~~~ 610 (621)
+.+++.|+++.++.+
T Consensus 381 ~~~l~~L~~~~~~~~ 395 (397)
T PRK06939 381 DRAIDAFEKVGKELG 395 (397)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988765
No 472
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=33.08 E-value=1.1e+02 Score=34.17 Aligned_cols=138 Identities=14% Similarity=0.235 Sum_probs=81.9
Q ss_pred HHHHHhhccccc-ccCCcEEeeec--------------HhHhhhcCC-CCCceeeeeecccCCCccCCCchhHHHHHHHH
Q psy8733 449 FGVIIAGAQKNI-GPAGITVVIVR--------------EDLLEYALP-ITPTVFHFKINADNNSVYNTPPTFVVHVIQRV 512 (621)
Q Consensus 449 ~~~~~a~~qk~~-GpaGl~v~iv~--------------~~~l~~~~~-~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~v 512 (621)
.||++++.+|.| ||-| ++++.+ +++-++-.. ..|.+. -.|..=.|-.+.-.
T Consensus 223 ADvvt~sThKtl~GPrg-giI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~q------------g~~h~~~iaalAva 289 (399)
T PF00464_consen 223 ADVVTGSTHKTLRGPRG-GIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQ------------GGPHMHRIAALAVA 289 (399)
T ss_dssp SSEEEEESSGGG-SSS--EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-------------SS--HHHHHHHHHH
T ss_pred ceEEEeeccccccccCc-eEEEEcCCccccCCcccccHHHHHHHhccccCCCcc------------cCcchhHHHHHHHH
Confidence 589999999999 6998 788888 555443211 123222 12333345555666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHhccCCcccc----------cCCCCC-ccc-HHHHHHHHHccCccc----cCC
Q psy8733 513 FAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC----------PVQAGF-PLD-ELFLKEAKAHNMIQL----KGH 576 (621)
Q Consensus 513 l~~~~~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~----------~v~~~~-~~~-~~~~~~~~~~~i~~~----~g~ 576 (621)
|+...+..+ ++..++..+=|+.|-+.+.+.. | .. .|+-.. .++ ..+-+.+++.||+.- -+-
T Consensus 290 l~ea~~~~f-k~Ya~qVv~NAk~La~~L~~~G-~-~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d 366 (399)
T PF00464_consen 290 LKEALSPEF-KEYAKQVVKNAKALAEALQERG-F-KVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGD 366 (399)
T ss_dssp HHHHTSHHH-HHHHHHHHHHHHHHHHHHHHTT---EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTT
T ss_pred HhcccCHHH-HHHHHHHHHHHHHHHHHHhhCC-c-EEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeecccccCCC
Confidence 666543333 6888899999999999998764 2 11 111001 122 346688889999842 222
Q ss_pred CC---CCccceeecc----CCCHHHHHHHHHHH
Q psy8733 577 RL---VGGIRASIYN----AITVDEAVILVKFM 602 (621)
Q Consensus 577 ~~---~~~~r~~~~~----a~~~~~~~~l~~~~ 602 (621)
++ ..+||++.-. .+..+|++.+.+||
T Consensus 367 ~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~I 399 (399)
T PF00464_consen 367 RSPFVPSGLRLGTPALTRRGMKEEDMKEIAELI 399 (399)
T ss_dssp STTTT-SEEEEESHHHHHTT--HHHHHHHHHHH
T ss_pred CCCCCCCEEEECCHHHHhCCCCHHHHHHHHhhC
Confidence 32 4679999754 46788999988876
No 473
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=32.81 E-value=70 Score=34.04 Aligned_cols=139 Identities=12% Similarity=0.099 Sum_probs=88.7
Q ss_pred HHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy8733 452 IIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQ 531 (621)
Q Consensus 452 ~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ 531 (621)
+..|.-|.+|++| +.++.++++.+.... ..........+|.+.+..+-..|+++.+. +.+.++..+
T Consensus 233 ~~~s~sK~~~~~G-g~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~aa~~aal~~~~~~---~~~~~~~~~ 298 (385)
T PRK05958 233 LVGTLGKALGSSG-AAVLGSETLIDYLIN----------RARPFIFTTALPPAQAAAARAALRILRRE---PERRERLAA 298 (385)
T ss_pred EEEechhhcccCC-cEEEcCHHHHHHHHH----------hCccceecCCCCHHHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence 3455678889888 666777777654211 01111011235556666676788887642 677888889
Q ss_pred HHHHHHHHHhccC--------CcccccCCCCCcccHHHHHHHHHccCccccCC-C--C--CCccceeeccCCCHHHHHHH
Q psy8733 532 KSVLLYQEIDNSD--------KFYECPVQAGFPLDELFLKEAKAHNMIQLKGH-R--L--VGGIRASIYNAITVDEAVIL 598 (621)
Q Consensus 532 ka~~lY~~id~~~--------~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~-~--~--~~~~r~~~~~a~~~~~~~~l 598 (621)
+.+.+.+.+.+.. .|+...++ +.....+|.+.++++||....+. . . .+.||++.-..++.|+++.+
T Consensus 299 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~ 377 (385)
T PRK05958 299 LIARLRAGLRALGFQLMDSQSAIQPLIVG-DNERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRL 377 (385)
T ss_pred HHHHHHHHHHHcCCCcCCCCCCEEEEEeC-CHHHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHH
Confidence 9999999987642 11111111 11134568999999999975421 1 1 24599999778899999999
Q ss_pred HHHHHHH
Q psy8733 599 VKFMKEF 605 (621)
Q Consensus 599 ~~~~~~~ 605 (621)
++-|++.
T Consensus 378 l~~l~~~ 384 (385)
T PRK05958 378 LEALAEA 384 (385)
T ss_pred HHHHHhc
Confidence 9988753
No 474
>PRK07682 hypothetical protein; Validated
Probab=32.73 E-value=31 Score=37.07 Aligned_cols=142 Identities=16% Similarity=0.214 Sum_probs=88.9
Q ss_pred HHHhhcccccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 451 VIIAGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 451 ~~~a~~qk~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
++..|-.|.+|.+| ++.++.++++++.... .... +..++|.+..+.+-..|+.-. .-++.+.+.
T Consensus 219 i~~~S~SK~~~~~GlR~G~~~~~~~~i~~l~~-----------~~~~-~~~~~~~~~q~a~~~~l~~~~--~~~~~~~~~ 284 (378)
T PRK07682 219 ILISGFSKGFAMTGWRLGFIAAPVYFSEAMLK-----------IHQY-SMMCAPTMAQFAALEALRAGN--DDVIRMRDS 284 (378)
T ss_pred EEEecCcccccChhhhhhhhhcCHHHHHHHHH-----------HHHh-hccCCCHHHHHHHHHHHhCCh--HHHHHHHHH
Confidence 44567789999778 8889999998876321 1111 223455666666655554211 125666777
Q ss_pred HHHHHHHHHHHHhccC--------Cccccc-CCCCCcccHHHHHHH-HHccCccccCC--CC--CCccceeeccCCCHHH
Q psy8733 529 SLQKSVLLYQEIDNSD--------KFYECP-VQAGFPLDELFLKEA-KAHNMIQLKGH--RL--VGGIRASIYNAITVDE 594 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~--------~~~~~~-v~~~~~~~~~~~~~~-~~~~i~~~~g~--~~--~~~~r~~~~~a~~~~~ 594 (621)
-+++.+.+++.+.+.. +||..+ +.+......+|.+.+ +++|+....|. +. .+.||++.-. +.++
T Consensus 285 ~~~~~~~~~~~L~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~--~~~~ 362 (378)
T PRK07682 285 YRKRRNFFVTSFNEIGLTCHVPGGAFYAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYAT--SLEQ 362 (378)
T ss_pred HHHHHHHHHHHHHHCCCccCCCCeeEEEEEeccCCCCCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCC--CHHH
Confidence 7899999999998652 122221 111111245577665 57899877664 32 4669999753 6888
Q ss_pred HHHHHHHHHHHHHH
Q psy8733 595 AVILVKFMKEFRHK 608 (621)
Q Consensus 595 ~~~l~~~~~~~~~~ 608 (621)
.++.++-|+++.++
T Consensus 363 l~~~l~~l~~~l~~ 376 (378)
T PRK07682 363 LQEAMKRMKRFVEN 376 (378)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888888777643
No 475
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=32.65 E-value=4.8e+02 Score=28.16 Aligned_cols=85 Identities=13% Similarity=0.083 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhccC--Cccccc-CCCC-------------Cc-ccHHHHHHHHHccCccccCCCC------
Q psy8733 522 LAKMEQNSLQKSVLLYQEIDNSD--KFYECP-VQAG-------------FP-LDELFLKEAKAHNMIQLKGHRL------ 578 (621)
Q Consensus 522 ~~~~~~~~~~ka~~lY~~id~~~--~~~~~~-v~~~-------------~~-~~~~~~~~~~~~~i~~~~g~~~------ 578 (621)
++.+.++.++-++.+++.+++.+ ++...+ +.++ .. .-.+|.+.++++||....+|..
T Consensus 249 l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~ 328 (375)
T PRK11706 249 ADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRDLEDRSALINFLKEAGIMAVFHYIPLHSSPA 328 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECCcCCHHHHHHHHHHCCCCccccCCccCcchh
Confidence 55666667777778888887654 222211 1110 11 2356899999999974433311
Q ss_pred ------------------CCccceeeccCCCHHHHHHHHHHHHHHH
Q psy8733 579 ------------------VGGIRASIYNAITVDEAVILVKFMKEFR 606 (621)
Q Consensus 579 ------------------~~~~r~~~~~a~~~~~~~~l~~~~~~~~ 606 (621)
...|-+-++|.++.||++..++.+++|.
T Consensus 329 ~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 374 (375)
T PRK11706 329 GERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF 374 (375)
T ss_pred hHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence 2237777899999999999999998864
No 476
>PRK05968 hypothetical protein; Provisional
Probab=32.59 E-value=69 Score=35.09 Aligned_cols=81 Identities=11% Similarity=0.055 Sum_probs=47.0
Q ss_pred hHHHHHhhcccccc-cCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHH
Q psy8733 448 FFGVIIAGAQKNIG-PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAK 524 (621)
Q Consensus 448 ~~~~~~a~~qk~~G-paG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~ 524 (621)
..|++..|..|.+| |.| .++++.+++++++.... .. ...+ .+.+-+.-+++-+.|+- +..
T Consensus 198 g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~-------~~-~~~g---~~~~~~~A~~~l~~L~t------l~~ 260 (389)
T PRK05968 198 GVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAE-------AY-PYLG---AKLSPFEAWLLLRGLRT------LPL 260 (389)
T ss_pred CCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHH-------HH-HhCC---CCCChHHHHHHHcccCc------HHH
Confidence 35788899999997 555 57777888887764321 00 0001 12223444544333332 333
Q ss_pred HHHHHHHHHHHHHHHHhccCC
Q psy8733 525 MEQNSLQKSVLLYQEIDNSDK 545 (621)
Q Consensus 525 ~~~~~~~ka~~lY~~id~~~~ 545 (621)
--++..+.++.+.+++++++.
T Consensus 261 r~~~~~~~a~~la~~L~~~p~ 281 (389)
T PRK05968 261 RMKAHEASALEIARRLKAHPV 281 (389)
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 333344458889999998874
No 477
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=32.43 E-value=1e+02 Score=31.96 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=30.0
Q ss_pred hhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEE-cChHHHHHHHHHHHhCC
Q psy8733 136 ISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVV-TGSWSKKAAAEAEKYGK 194 (621)
Q Consensus 136 la~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~-tG~~~~~~~~~a~~~G~ 194 (621)
|...+++.+|++|+=. |.|+|.+++.+.+.+.+..++--.. ...+.+.+.+..+++|.
T Consensus 32 I~~~l~i~pG~~VlEa-GtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl 90 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEA-GTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL 90 (247)
T ss_dssp HHHHTT--TT-EEEEE---TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCCCCCEEEEe-cCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC
Confidence 4444555555555432 4456678777887777655543322 23344456666677775
No 478
>KOG1549|consensus
Probab=31.14 E-value=2.9e+02 Score=31.14 Aligned_cols=158 Identities=18% Similarity=0.091 Sum_probs=88.6
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHh-cCChHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKR-QGGLAKMEQ 527 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~-~gg~~~~~~ 527 (621)
-|....++-|-+||-|+++..||++ +.+ .+..|.+. +-- .--+-.-.|+++..+-.+|..++.+.+ .++.++.-+
T Consensus 234 ~D~~s~s~HK~ygp~~iGaLYvr~~-~~~-~~~~p~~~-GGg-q~r~~rsGT~~~~~~~~~gsA~e~~~~~~~~~~~~~~ 309 (428)
T KOG1549|consen 234 ADFLSISAHKIYGPPGIGALYVRRK-RPR-LRVEPPLS-GGG-QERGLRSGTVATPLAVGLGSAAEFVNKEMAYDEAIIK 309 (428)
T ss_pred chheeeecccccCCCcceEEEEccC-CCc-ccccCccc-CCc-cccccccCCcCchhhhhhHHHHHHHHhhcchhHHHHH
Confidence 4667788899999999999999981 111 12223333 222 222455678888888899999999866 444444444
Q ss_pred HHHHHHH-HHHHHHhccCCcccc----------------cCCCCCcccHHHHHHHH------Hcc------CccccCCCC
Q psy8733 528 NSLQKSV-LLYQEIDNSDKFYEC----------------PVQAGFPLDELFLKEAK------AHN------MIQLKGHRL 578 (621)
Q Consensus 528 ~~~~ka~-~lY~~id~~~~~~~~----------------~v~~~~~~~~~~~~~~~------~~~------i~~~~g~~~ 578 (621)
+ .++ +++....+.+.-+.. .|+.. .+-...++.+. ... +....|...
T Consensus 310 ~---~~~~ll~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~l~s~~a~~~~~~epsy~l~~~G~~~ 385 (428)
T KOG1549|consen 310 R---LSEKLLMGIGQSLPEVTLNGSGKSRYPGLVSLSFPYVEGE-SLLMDLKDVALSSGSACTSASLEPSYVLRAIGVDE 385 (428)
T ss_pred H---HHHHHHHHHhhhCchhhccCCcccccccceeeecccccCc-chhhhhhhhhhcccchhhcCCCCcchhhhhcCcch
Confidence 4 333 444444322211111 11110 01111111110 011 112223311
Q ss_pred ---CCccceeeccCCCHHHHHHHHHHHHHHHHHcCCCCc
Q psy8733 579 ---VGGIRASIYNAITVDEAVILVKFMKEFRHKHSRLSA 614 (621)
Q Consensus 579 ---~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~ 614 (621)
.+.||++.==-.+.+|++.|++-+++.-+....+|+
T Consensus 386 ~~~~~~iRis~G~y~t~~di~~~~~~i~~~v~~~~~~s~ 424 (428)
T KOG1549|consen 386 DLAHSSIRISIGRYTTEEDIDYLVDAIKKLVSLLREMSP 424 (428)
T ss_pred hhhcceeEEeeeeeCcHHHHHHHHHHHHHHHHhccccCC
Confidence 555787776667899999999999999887766654
No 479
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=29.78 E-value=84 Score=33.82 Aligned_cols=145 Identities=16% Similarity=0.156 Sum_probs=92.9
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
.|++..|.-|.+|+..++.++.++++++...+. .......+|+|...+..+-..|+.++ +++.+.++
T Consensus 231 ~di~~~s~sK~l~g~r~G~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~a~~~al~~~~---~~~~~~~~ 297 (393)
T TIGR01822 231 VDIITGTLGKALGGASGGFTTARKEVVELLRQR----------SRPYLFSNSLPPAVVGASIKVLEMLE---ASNELRDR 297 (393)
T ss_pred CeEEEEEChHHhhCCCcEEEEeCHHHHHHHHHh----------CccceecCCCCHHHHHHHHHHHHHHh---cCHHHHHH
Confidence 355556777888744457888899988764321 11111224555555555555566554 36778888
Q ss_pred HHHHHHHHHHHHhccCCcccc-------cCCCCC-cccHHHHHHHHHccCccccCCCC------CCccceeeccCCCHHH
Q psy8733 529 SLQKSVLLYQEIDNSDKFYEC-------PVQAGF-PLDELFLKEAKAHNMIQLKGHRL------VGGIRASIYNAITVDE 594 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~-------~v~~~~-~~~~~~~~~~~~~~i~~~~g~~~------~~~~r~~~~~a~~~~~ 594 (621)
.+++.+.+++.+++. +|-.. ++.-.. .....|.+.+.++||... |... ...||++.-..++.||
T Consensus 298 ~~~~~~~l~~~L~~~-g~~~~~~~~~~~~i~~~~~~~~~~l~~~L~~~gI~v~-~~~~~~~~~~~~~iRis~~~~~t~ed 375 (393)
T TIGR01822 298 LWANTRYFRERMEAA-GFDIKPADHPIIPVMLYDAVLAQRFARRLLEEGIYVT-GFFYPVVPKGQARIRVQISAAHTEEQ 375 (393)
T ss_pred HHHHHHHHHHHHHHc-CCCCCCCCCCEEEEEeCCHHHHHHHHHHHHHCCeeEe-eeCCCCCCCCCceEEEEECCCCCHHH
Confidence 999999999999764 22110 000011 124568888889997754 4322 2349999888999999
Q ss_pred HHHHHHHHHHHHHH
Q psy8733 595 AVILVKFMKEFRHK 608 (621)
Q Consensus 595 ~~~l~~~~~~~~~~ 608 (621)
++.+++-|++..++
T Consensus 376 i~~~~~~l~~~~~~ 389 (393)
T TIGR01822 376 LDRAVEAFTRIGRE 389 (393)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
No 480
>PRK08297 L-lysine aminotransferase; Provisional
Probab=29.53 E-value=5.2e+02 Score=28.91 Aligned_cols=111 Identities=10% Similarity=-0.000 Sum_probs=63.0
Q ss_pred CCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCCcccccCCC--------CC-cccHHHHHH
Q psy8733 494 NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQA--------GF-PLDELFLKE 564 (621)
Q Consensus 494 ~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~--------~~-~~~~~~~~~ 564 (621)
..+||+- |.++.-+.-.+|+-+++.+-++..+++.+.=.+.|-+..++++......-.. .+ +....|.+.
T Consensus 321 ~~~T~~g-npl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~ 399 (443)
T PRK08297 321 INSTWGG-NLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDLPTTADRDEVIRR 399 (443)
T ss_pred cCCCCCc-cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeeccceEEEEEecCHHHHHHHHHH
Confidence 3567753 4455667778888887655344443333333333333333333111000000 11 134568889
Q ss_pred HHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHHHHH
Q psy8733 565 AKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRH 607 (621)
Q Consensus 565 ~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~ 607 (621)
+.++|++...+. ...+|++-=-.||.||++.+++-|++.-.
T Consensus 400 l~~~Gvl~~~~~--~~~lr~~P~l~~t~~eid~~l~~l~~~l~ 440 (443)
T PRK08297 400 LWEEGVLVLPCG--ERSIRFRPALTVTTEEIDAAIDALRRALP 440 (443)
T ss_pred HHHCCEEEecCC--CCeEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 999999864321 24577764446899999999998887654
No 481
>PRK07036 hypothetical protein; Provisional
Probab=29.31 E-value=7.5e+02 Score=27.91 Aligned_cols=128 Identities=10% Similarity=0.119 Sum_probs=71.1
Q ss_pred cEEeeecHhHhhhcCCC-CCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH---
Q psy8733 465 ITVVIVREDLLEYALPI-TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI--- 540 (621)
Q Consensus 465 l~v~iv~~~~l~~~~~~-~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ka~~lY~~i--- 540 (621)
++.++.++++.+...+. .+. ......+||+ -|-++.-+.-.+|+.|++.+=++.. .++.+.|-+-+
T Consensus 299 i~av~~~~~i~~~~~~~~~~~-----~~~~~~~T~~-gnpl~~aaa~a~Le~i~~~~l~~~~----~~~g~~l~~~L~~l 368 (466)
T PRK07036 299 LGAVIISERLLDVISGPNAKG-----NVFTHGFTYS-GHPVACAAALKNIEIMEREGLCEHV----REVGPYFEERLASL 368 (466)
T ss_pred cEEEEEcHHHHHHHhcccCcC-----cccccCCCCC-CCHHHHHHHHHHHHHHHhCCHHHHH----HHHHHHHHHHHHHh
Confidence 68888999987653210 000 0012345666 4666788888899999765533333 33333333333
Q ss_pred hccC--------Ccccc--cCCC-C--------CcccHHHHHHHHHccCccccCCCCCCccceeeccCC--CHHHHHHHH
Q psy8733 541 DNSD--------KFYEC--PVQA-G--------FPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAI--TVDEAVILV 599 (621)
Q Consensus 541 d~~~--------~~~~~--~v~~-~--------~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~--~~~~~~~l~ 599 (621)
.+++ |.+.. .+++ . ..+...|.+.+.++|++.... + +.+| +-|++ |.+|++.++
T Consensus 369 ~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~-~--~~~~--l~Ppl~it~~~id~~~ 443 (466)
T PRK07036 369 RELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPL-E--HLCV--LSPPLIITRAQIDEIV 443 (466)
T ss_pred ccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeec-C--CEEE--EeCCCcCCHHHHHHHH
Confidence 3332 00000 0110 0 012345788999999987531 1 3455 56776 999998888
Q ss_pred HHHHHHHH
Q psy8733 600 KFMKEFRH 607 (621)
Q Consensus 600 ~~~~~~~~ 607 (621)
+-|++.-+
T Consensus 444 ~~l~~al~ 451 (466)
T PRK07036 444 AILRAAIE 451 (466)
T ss_pred HHHHHHHH
Confidence 87765443
No 482
>PRK06855 aminotransferase; Validated
Probab=27.37 E-value=5.1e+02 Score=28.63 Aligned_cols=103 Identities=14% Similarity=0.204 Sum_probs=61.5
Q ss_pred CCchhHHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHHHHhccCC---------ccccc-CCCCC----------
Q psy8733 500 TPPTFVVHVIQRVFAWIKRQG----GLAKMEQNSLQKSVLLYQEIDNSDK---------FYECP-VQAGF---------- 555 (621)
Q Consensus 500 TP~~~~iy~~~~vl~~~~~~g----g~~~~~~~~~~ka~~lY~~id~~~~---------~~~~~-v~~~~---------- 555 (621)
.||.+.-+++...|+ .| =++.+.+.-++|.+.+++.|++.++ ||.-. +.+..
T Consensus 282 ~~~~~~Q~a~~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~ 357 (433)
T PRK06855 282 CSTTLPQMAIPRIMS----HPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIE 357 (433)
T ss_pred CCChHHHHHHHHhhc----CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccCCCeeEEEeeccccccccccccCCcc
Confidence 456666665544442 22 2566777788899999999987543 22211 11110
Q ss_pred ----------------cccHHHH-HHHHHccCccccC--CCC-CCccceeeccCCCHHHHHHHHHHHHHHHH
Q psy8733 556 ----------------PLDELFL-KEAKAHNMIQLKG--HRL-VGGIRASIYNAITVDEAVILVKFMKEFRH 607 (621)
Q Consensus 556 ----------------~~~~~~~-~~~~~~~i~~~~g--~~~-~~~~r~~~~~a~~~~~~~~l~~~~~~~~~ 607 (621)
..+.+|. ..++++|+...-| ++. ..++|++.-. .+.|+++.-++.|.+..+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~-~~~~~i~~~~~~l~~~~~ 428 (433)
T PRK06855 358 NPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTLLE-RDEEKFEWIYQTLAEKIE 428 (433)
T ss_pred hhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEECC-CcHHHHHHHHHHHHHHHH
Confidence 0134555 5578899875555 433 3359999865 577777776666666554
No 483
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=25.82 E-value=2.3e+02 Score=31.40 Aligned_cols=98 Identities=18% Similarity=0.351 Sum_probs=63.9
Q ss_pred CCccCCCchhHHHHHHHHH-------HHHHhcCChHHHHHHHHHHHHHHHHHHhccC---CcccccC-CCC---Cc-c-c
Q psy8733 495 NSVYNTPPTFVVHVIQRVF-------AWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD---KFYECPV-QAG---FP-L-D 558 (621)
Q Consensus 495 ~s~~nTP~~~~iy~~~~vl-------~~~~~~gg~~~~~~~~~~ka~~lY~~id~~~---~~~~~~v-~~~---~~-~-~ 558 (621)
..+|-.||..+-.++.-|| +|.+| +..|..|..+-.+.+.+.+.+.- +| .... +.+ .. + .
T Consensus 280 R~~ySnPP~~Ga~vva~IL~~p~Lra~W~~E---l~~Mr~Ri~~mR~~lv~~L~~~~~~~~f-~~i~~Q~GMFsy~Gls~ 355 (396)
T COG1448 280 RTNYSNPPAHGAAVVATILNNPELRAEWEQE---LEEMRQRILEMRQALVDALKALGAPRNF-DFIISQRGMFSYTGLSP 355 (396)
T ss_pred HhccCCCchhhHHHHHHHhCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhCCCccc-chHhhcCceeecCCCCH
Confidence 5678899999999999888 47765 78899999999999999888721 11 1111 111 12 3 3
Q ss_pred HHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHH
Q psy8733 559 ELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMK 603 (621)
Q Consensus 559 ~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~ 603 (621)
+++..--+++||...+. | || |-..++...++.|++-+.
T Consensus 356 ~QV~rLree~~IY~v~s----G--Ri-~vaGl~~~ni~~va~ai~ 393 (396)
T COG1448 356 EQVDRLREEFGIYLVAS----G--RI-NVAGLNTSNIDYVAKAIA 393 (396)
T ss_pred HHHHHHHHhccEEEecC----C--ee-eeccCChhhHHHHHHHHH
Confidence 44666667777764432 2 33 235667777777766554
No 484
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=24.82 E-value=1.1e+02 Score=33.33 Aligned_cols=146 Identities=12% Similarity=0.042 Sum_probs=90.0
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
.|++..+-.|.+|..| +.++.++++++.-... ........+.|-..+..+-..|+++++. +.++++
T Consensus 238 ~div~~t~sKa~g~~G-G~i~~~~~~~~~l~~~----------~~~~~~t~~~~~~~~aaa~aaL~~~~~~---~~~~~~ 303 (402)
T TIGR01821 238 IDIIEGTLAKAFGVVG-GYIAASRKLIDAIRSY----------APGFIFTTSLPPAIAAGATASIRHLKES---QDLRRA 303 (402)
T ss_pred CeEEEEechhhhccCC-ceeecCHHHHHHHHHh----------CcCceecCcCCHHHHHHHHHHHHHhhcC---HHHHHH
Confidence 3555567788998766 5566788876653210 1111111234445566666788888754 556666
Q ss_pred HHHHHHHHHHHHhccCCcccccCCC--------CC-cccHHHHHHHH-HccCcccc-CCCC----CCccceeeccCCCHH
Q psy8733 529 SLQKSVLLYQEIDNSDKFYECPVQA--------GF-PLDELFLKEAK-AHNMIQLK-GHRL----VGGIRASIYNAITVD 593 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~~v~~--------~~-~~~~~~~~~~~-~~~i~~~~-g~~~----~~~~r~~~~~a~~~~ 593 (621)
..+..+.+.+.+++. ++ ...... .. .....+.+.+. ++||.... .|.. .+.||++.=-.++.|
T Consensus 304 ~~~~~~~l~~~L~~~-g~-~~~~~~~~i~~i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~e 381 (402)
T TIGR01821 304 HQENVKRLKNLLEAL-GI-PVIPNPSHIVPVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDK 381 (402)
T ss_pred HHHHHHHHHHHHHHc-CC-CcCCCCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHH
Confidence 677888888888764 22 111001 11 12345777765 56987432 2322 246999998899999
Q ss_pred HHHHHHHHHHHHHHHcC
Q psy8733 594 EAVILVKFMKEFRHKHS 610 (621)
Q Consensus 594 ~~~~l~~~~~~~~~~~~ 610 (621)
|++++++-|++..++.+
T Consensus 382 di~~~~~~l~~~~~~~~ 398 (402)
T TIGR01821 382 MIDDLVEALLLVWDRLG 398 (402)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999887643
No 485
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=23.87 E-value=96 Score=34.33 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=51.4
Q ss_pred HHHHHhhcccccc-cCC--cEEeeec-HhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHH
Q psy8733 449 FGVIIAGAQKNIG-PAG--ITVVIVR-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAK 524 (621)
Q Consensus 449 ~~~~~a~~qk~~G-paG--l~v~iv~-~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~ 524 (621)
.|++..|..|.+| +.| .++++.+ +++.++.. . ..+...+ +++.|..|++-+.++|+..
T Consensus 197 aDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~----------~-~~~~~g~-~~s~~~a~l~~~gl~tl~~------ 258 (405)
T PRK08776 197 ADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLV----------W-WANALGL-TGSPFDAFLTLRGLRTLDA------ 258 (405)
T ss_pred CCEEEecCceeecCCCCceEEEEEeCCHHHHHHHH----------H-HHHhcCC-CCCHHHHHHHHhhhCcHHH------
Confidence 4788999999997 665 3556664 55544421 1 1111122 4788999999999999852
Q ss_pred HHHHHHHHHHHHHHHHhccC
Q psy8733 525 MEQNSLQKSVLLYQEIDNSD 544 (621)
Q Consensus 525 ~~~~~~~ka~~lY~~id~~~ 544 (621)
--++.++-+..+.++|++++
T Consensus 259 r~~~~~~na~~la~~L~~~p 278 (405)
T PRK08776 259 RLRVHQENADAIAALLDGHA 278 (405)
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 23344556778889999887
No 486
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=23.11 E-value=8e+02 Score=26.54 Aligned_cols=86 Identities=6% Similarity=0.009 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCCc-ccccCCC---C---------C---c-ccHHHHHHHHHccCccccCC-------
Q psy8733 521 GLAKMEQNSLQKSVLLYQEIDNSDKF-YECPVQA---G---------F---P-LDELFLKEAKAHNMIQLKGH------- 576 (621)
Q Consensus 521 g~~~~~~~~~~ka~~lY~~id~~~~~-~~~~v~~---~---------~---~-~~~~~~~~~~~~~i~~~~g~------- 576 (621)
+++.+.++.++-++.+.+.|.+.+.. +..+... . . . ...+|.+.++++||-..-.|
T Consensus 252 ~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~gI~~~~~~~~~~~~~ 331 (379)
T PRK11658 252 KLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEERCGISRDALMEALKERGIGTGLHFRAAHTQK 331 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCccccCCHHHHHHHHHHCCCCCcccCcCcccCh
Confidence 58888888888888888998765421 1111110 0 0 1 13468899999998754222
Q ss_pred ------CC----------CCccceeeccCCCHHHHHHHHHHHHHHH
Q psy8733 577 ------RL----------VGGIRASIYNAITVDEAVILVKFMKEFR 606 (621)
Q Consensus 577 ------~~----------~~~~r~~~~~a~~~~~~~~l~~~~~~~~ 606 (621)
+. ...|.+-++|.++.||++..++.++++.
T Consensus 332 ~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 332 YYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIA 377 (379)
T ss_pred hhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 10 1226666799999999999999998874
No 487
>PRK05764 aspartate aminotransferase; Provisional
Probab=22.85 E-value=86 Score=33.78 Aligned_cols=144 Identities=13% Similarity=0.145 Sum_probs=89.9
Q ss_pred HHHHhhcccccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 450 GVIIAGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 450 ~~~~a~~qk~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
.++..|--|.+|++| ++.++.++++++...+ +. ..++..++.+.-+.+-..|+. ...-++.+.+
T Consensus 230 ~i~~~s~SK~~~~~G~RiG~i~~~~~~~~~~~~-------~~-----~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~ 295 (393)
T PRK05764 230 TITVNGFSKAYAMTGWRLGYAAGPKELIKAMSK-------LQ-----SHSTSNPTSIAQYAAVAALNG--PQDEVEEMRQ 295 (393)
T ss_pred EEEEecCcccccCccceeEEEecCHHHHHHHHH-------HH-----hhcccCCChHHHHHHHHHHcC--ChHHHHHHHH
Confidence 345566679999778 6778888888776321 11 122334556666666555541 1123456667
Q ss_pred HHHHHHHHHHHHHhccCCc---------ccc-cCCCCCc----ccHHHHHHH-HHccCccccC--CCCCCccceeeccCC
Q psy8733 528 NSLQKSVLLYQEIDNSDKF---------YEC-PVQAGFP----LDELFLKEA-KAHNMIQLKG--HRLVGGIRASIYNAI 590 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~~~---------~~~-~v~~~~~----~~~~~~~~~-~~~~i~~~~g--~~~~~~~r~~~~~a~ 590 (621)
.-+++.+.+.+.+++.+++ |.- .+.+... ...+|.+.+ +++||....| ++..+.||++. +.
T Consensus 296 ~~~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~--~~ 373 (393)
T PRK05764 296 AFEERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSY--AT 373 (393)
T ss_pred HHHHHHHHHHHHHhhCCCCcccCCCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEe--cC
Confidence 7777888899999877432 111 1110000 125666554 6789986665 44467799985 46
Q ss_pred CHHHHHHHHHHHHHHHHHc
Q psy8733 591 TVDEAVILVKFMKEFRHKH 609 (621)
Q Consensus 591 ~~~~~~~l~~~~~~~~~~~ 609 (621)
+.|+++..++.|+++-++|
T Consensus 374 ~~~~~~~~i~~l~~~~~~~ 392 (393)
T PRK05764 374 SLEDLEEGLERIERFLESL 392 (393)
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 8999999999998887765
No 488
>PLN02483 serine palmitoyltransferase
Probab=22.55 E-value=1.6e+02 Score=33.41 Aligned_cols=147 Identities=15% Similarity=0.186 Sum_probs=92.5
Q ss_pred HHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccC-CCchhHHHHHHHHHHHHHhcCC---hHHH
Q psy8733 450 GVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYN-TPPTFVVHVIQRVFAWIKRQGG---LAKM 525 (621)
Q Consensus 450 ~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~n-TP~~~~iy~~~~vl~~~~~~gg---~~~~ 525 (621)
|++..|-=|-+|+.| +.++.++++++..... ....+|. +++...+-.+-..|+++....| ...+
T Consensus 303 dI~~~SfSKs~g~~G-G~i~~~~~li~~l~~~-----------~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~ 370 (489)
T PLN02483 303 DIMMGTFTKSFGSCG-GYIAGSKELIQYLKRT-----------CPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQK 370 (489)
T ss_pred cEEEEecchhcccCc-eEEEcCHHHHHHHHHh-----------CccccccCCcCHHHHHHHHHHHHHHHhCccccchHHH
Confidence 445566678889888 7788899988764321 1111222 1222222334556777764433 3455
Q ss_pred HHHHHHHHHHHHHHHhccCCc--ccc---cCCC---CC-cccHHHHHHHHHccCccc-cCCCC----CCccceeeccCCC
Q psy8733 526 EQNSLQKSVLLYQEIDNSDKF--YEC---PVQA---GF-PLDELFLKEAKAHNMIQL-KGHRL----VGGIRASIYNAIT 591 (621)
Q Consensus 526 ~~~~~~ka~~lY~~id~~~~~--~~~---~v~~---~~-~~~~~~~~~~~~~~i~~~-~g~~~----~~~~r~~~~~a~~ 591 (621)
.++.+++.+.+++.+.+. +| +.. |+-. .. .....|.+.+.++||... .||.. .+.+|++.=-+++
T Consensus 371 ~~~l~~~~~~l~~~L~~~-G~~v~~~~~sp~~~l~l~~~~~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa~~t 449 (489)
T PLN02483 371 LAQIRENSNFFRSELQKM-GFEVLGDNDSPVMPIMLYNPAKIPAFSRECLKQNVAVVVVGFPATPLLLARARICISASHS 449 (489)
T ss_pred HHHHHHHHHHHHHHHHHC-CCcccCCCCCCEEEEEECCHHHHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCCCCC
Confidence 667888999999999876 33 100 1100 00 122358888889999854 56632 3679999888899
Q ss_pred HHHHHHHHHHHHHHHHHc
Q psy8733 592 VDEAVILVKFMKEFRHKH 609 (621)
Q Consensus 592 ~~~~~~l~~~~~~~~~~~ 609 (621)
.|+++.+++-|+++.++.
T Consensus 450 ~edId~~l~~L~~~~~~~ 467 (489)
T PLN02483 450 REDLIKALEVISEVGDLV 467 (489)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999998887643
No 489
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=21.94 E-value=8.3e+02 Score=27.23 Aligned_cols=125 Identities=8% Similarity=-0.010 Sum_probs=70.0
Q ss_pred EEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhc---
Q psy8733 466 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN--- 542 (621)
Q Consensus 466 ~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ka~~lY~~id~--- 542 (621)
+.++.++++.+.-...- .......+||+ -|-++....-.+|+-+++.+ ..++..++.+.+-+.+.+
T Consensus 284 ~av~~~~~i~~~~~~~~------~~~~~~~~T~~-g~p~~~aaa~a~L~~i~~~~----~~~~~~~~g~~l~~~l~~l~~ 352 (428)
T PRK07986 284 SATLTTREVAETISNGE------AGCFMHGPTFM-GNPLACAVANASLSLLESGD----WQQQVAAIEAQLREELAPLRD 352 (428)
T ss_pred cchhchHHHHHHhhcCC------CCccccCCCCC-cCHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHhc
Confidence 45566777765421100 00012346666 55667888888899887653 233444444445444443
Q ss_pred cC--------CcccccCCCCCc-ccHHHHHHHHHccCccccCCCCCCccceeeccC--CCHHHHHHHHHHHHHHHH
Q psy8733 543 SD--------KFYECPVQAGFP-LDELFLKEAKAHNMIQLKGHRLVGGIRASIYNA--ITVDEAVILVKFMKEFRH 607 (621)
Q Consensus 543 ~~--------~~~~~~v~~~~~-~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a--~~~~~~~~l~~~~~~~~~ 607 (621)
++ |.... |+=... ....+.+.+.++|++... ++ +.|| +.|. +|.||++.+++-+++--+
T Consensus 353 ~~~i~~vRg~Gl~~~-ve~~~~~~~~~~~~~l~~~Gl~~~~-~g--~~i~--~~Ppl~it~~ei~~~~~~l~~~l~ 422 (428)
T PRK07986 353 APMVADVRVLGAIGV-VETTRPVNMAALQRFFVEQGVWIRP-FG--KLIY--LMPPYIILPEQLQRLTAAVNRAVQ 422 (428)
T ss_pred CCCEEeEeccceEEE-EEeCCcccHHHHHHHHHHCCcEEEe-cC--CEEE--EeCCCCCCHHHHHHHHHHHHHHHh
Confidence 22 11110 000111 234688999999998643 22 3455 4677 999999999998876543
No 490
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=21.80 E-value=51 Score=34.63 Aligned_cols=119 Identities=18% Similarity=0.152 Sum_probs=82.8
Q ss_pred HHHHhhcccccc-cCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 450 GVIIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 450 ~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
|.+-.+.+|.++ |.|.++++++ +.-+...++++.+ .|++.+.++
T Consensus 208 d~~~~s~~K~l~~p~g~g~~~~~----------------------------------~~~~~~~l~~l~~-~g~~~~~~~ 252 (345)
T cd06450 208 DSISVDPHKYGLVPLGCSAVLVR----------------------------------ALKLWATLRRFGR-DGYGEHIDR 252 (345)
T ss_pred CEEEEchhHhhCCCcchHHHHHH----------------------------------HHHHHHHHHHHhH-HHHHHHHHH
Confidence 445567888775 7788877766 3333345666644 468899999
Q ss_pred HHHHHHHHHHHHhccCCcccccCCC---------CC----c-ccHHHHHHHHHccCccccCCCC--CCccceeeccCC-C
Q psy8733 529 SLQKSVLLYQEIDNSDKFYECPVQA---------GF----P-LDELFLKEAKAHNMIQLKGHRL--VGGIRASIYNAI-T 591 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~~v~~---------~~----~-~~~~~~~~~~~~~i~~~~g~~~--~~~~r~~~~~a~-~ 591 (621)
..+.++.+++.+.+.+++ ...-++ .. . ...++.+.++++|++...++.. .+.+|++.-..+ +
T Consensus 253 ~~~~~~~l~~~L~~~~~~-~~~~~~~~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t 331 (345)
T cd06450 253 IVDLAKYLAELIRADPGF-ELLGEPNLSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTT 331 (345)
T ss_pred HHHHHHHHHHHHhcCCCe-EEecCCceeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCC
Confidence 999999999999887654 211111 01 1 2245888899998776665543 567999997765 9
Q ss_pred HHHHHHHHHHHHH
Q psy8733 592 VDEAVILVKFMKE 604 (621)
Q Consensus 592 ~~~~~~l~~~~~~ 604 (621)
.||++.|++-|++
T Consensus 332 ~~di~~l~~~l~~ 344 (345)
T cd06450 332 RDDADALLEDIER 344 (345)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 491
>PRK06108 aspartate aminotransferase; Provisional
Probab=21.33 E-value=1.8e+02 Score=31.11 Aligned_cols=138 Identities=11% Similarity=-0.001 Sum_probs=83.9
Q ss_pred HHhhcccccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHH
Q psy8733 452 IIAGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNS 529 (621)
Q Consensus 452 ~~a~~qk~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~ 529 (621)
+..|-=|.+|.+| ++.++.++++++...+ + ....++ .+|.+..+++-..|+.- ..-++.+.++.
T Consensus 226 ~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~~-------~----~~~~~~-~~~~~~q~a~~~~l~~~--~~~~~~~~~~~ 291 (382)
T PRK06108 226 FVNSFSKNWAMTGWRLGWLVAPPALGQVLEK-------L----IEYNTS-CVAQFVQRAAVAALDEG--EDFVAELVARL 291 (382)
T ss_pred EEeechhhccCcccceeeeeCCHHHHHHHHH-------H----HHhccc-CCChHHHHHHHHHHhCC--hHHHHHHHHHH
Confidence 3455668899777 6889999998876321 1 111122 34455555444444321 11246677888
Q ss_pred HHHHHHHHHHHhccCCcccccCCC-C--------C-cccHHHHHHH-HHccCccccC--CCC--CCccceeeccCCCHHH
Q psy8733 530 LQKSVLLYQEIDNSDKFYECPVQA-G--------F-PLDELFLKEA-KAHNMIQLKG--HRL--VGGIRASIYNAITVDE 594 (621)
Q Consensus 530 ~~ka~~lY~~id~~~~~~~~~v~~-~--------~-~~~~~~~~~~-~~~~i~~~~g--~~~--~~~~r~~~~~a~~~~~ 594 (621)
+++.+.+++.++..+++ ...... + . ....+|.+.+ +++||....| ++. .+.||++.-. +.++
T Consensus 292 ~~~~~~l~~~L~~~~~~-~~~~p~~g~~~~~~l~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~--~~~~ 368 (382)
T PRK06108 292 RRSRDHLVDALRALPGV-EVAKPDGAMYAFFRIPGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR--DPAR 368 (382)
T ss_pred HHHHHHHHHHHHhCCCC-cccCCCeeEEEEEeCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC--CHHH
Confidence 88899999999876442 111111 0 1 1234576665 6789987554 332 4569998775 8888
Q ss_pred HHHHHHHHHHHH
Q psy8733 595 AVILVKFMKEFR 606 (621)
Q Consensus 595 ~~~l~~~~~~~~ 606 (621)
++..++-|+++.
T Consensus 369 l~~~l~~l~~~l 380 (382)
T PRK06108 369 LDEAVERLRRFL 380 (382)
T ss_pred HHHHHHHHHHHH
Confidence 888888887764
No 492
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=21.00 E-value=1.3e+02 Score=32.16 Aligned_cols=144 Identities=13% Similarity=0.117 Sum_probs=86.6
Q ss_pred HHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHH
Q psy8733 450 GVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNS 529 (621)
Q Consensus 450 ~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~ 529 (621)
+++..|..|.+|..| +.++.++++++.... ....+...++++....+.+...++.+.+.+ .+.++.
T Consensus 225 ~i~~~s~sK~~~~~g-G~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~a~~~al~~~~~~~---~~~~~~ 290 (385)
T TIGR01825 225 DIQVGTLSKAIGVVG-GYAAGHKELIEYLKN----------RARPFLFSTAQPPAVVAALAAAVDELQRSP---ELMERL 290 (385)
T ss_pred cEEEEeccHHhhcCC-CEEecCHHHHHHHHH----------hCccccccCCCCHHHHHHHHHHHHHHhcCH---HHHHHH
Confidence 444567788888666 556778888766321 111111112234445666667777665432 345555
Q ss_pred HHHHHHHHHHHhccCCcccccCCC--------CCc-ccHHHHHHHHHccCcc-ccCCCC----CCccceeeccCCCHHHH
Q psy8733 530 LQKSVLLYQEIDNSDKFYECPVQA--------GFP-LDELFLKEAKAHNMIQ-LKGHRL----VGGIRASIYNAITVDEA 595 (621)
Q Consensus 530 ~~ka~~lY~~id~~~~~~~~~v~~--------~~~-~~~~~~~~~~~~~i~~-~~g~~~----~~~~r~~~~~a~~~~~~ 595 (621)
.++.+.+++.+.+. ++ ...... ... ....|.+.+.++||.. +.+|.. .+.||++.-=.++.|++
T Consensus 291 ~~~~~~l~~~L~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e~i 368 (385)
T TIGR01825 291 WDNTRFFKAGLGKL-GY-DTGGSETPITPVVIGDEKAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAEHTKDDL 368 (385)
T ss_pred HHHHHHHHHHHHHc-CC-CCCCCCCCEEEEEECCHHHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcCCCCHHHH
Confidence 67889999998764 21 111000 111 2356888888889974 334433 24577765556999999
Q ss_pred HHHHHHHHHHHHHc
Q psy8733 596 VILVKFMKEFRHKH 609 (621)
Q Consensus 596 ~~l~~~~~~~~~~~ 609 (621)
+++++.|+++.++.
T Consensus 369 ~~~~~~l~~~~~~~ 382 (385)
T TIGR01825 369 DQALDAYEKVGKEL 382 (385)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987654
No 493
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=20.44 E-value=2.2e+02 Score=32.76 Aligned_cols=146 Identities=13% Similarity=0.115 Sum_probs=95.0
Q ss_pred hHHHHHhhccccc-ccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHH
Q psy8733 448 FFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKME 526 (621)
Q Consensus 448 ~~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~ 526 (621)
..|++.++..|-| ||.| +++.++++++++-....|. +|-||..=.|..+...++.+.+.+. +...
T Consensus 276 ~~D~vtgT~hKaL~GP~G-G~I~~~~~l~~~L~~a~P~------------i~gg~l~p~iAA~avAl~e~~~~ef-~~y~ 341 (493)
T PRK13580 276 HADIVTTTTHKTLRGPRG-GLVLAKKEYADAVDKGCPL------------VLGGPLPHVMAAKAVALAEARTPEF-QKYA 341 (493)
T ss_pred CCcEEEeCChhhccCCCe-EEEEecHHHHHHHhhCCCc------------ccCCCccHHHHHHHHHHHHHhCccH-HHHH
Confidence 3578889999999 8998 9999999987663221232 2233333355555555666654333 5677
Q ss_pred HHHHHHHHHHHHHHhccCCcc------cccCCC---CCc-ccH-HHHHHHHHccCccc-cCCCC-------CCccceeec
Q psy8733 527 QNSLQKSVLLYQEIDNSDKFY------ECPVQA---GFP-LDE-LFLKEAKAHNMIQL-KGHRL-------VGGIRASIY 587 (621)
Q Consensus 527 ~~~~~ka~~lY~~id~~~~~~------~~~v~~---~~~-~~~-~~~~~~~~~~i~~~-~g~~~-------~~~~r~~~~ 587 (621)
++..+.++.|-+.+.+.. |= .+++-. ++. ... .+.+.+.+.||+.- .-+-. ..+||++.-
T Consensus 342 ~~l~~Na~~La~~L~~~G-~~vv~ggTdshIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~ 420 (493)
T PRK13580 342 QQVVDNARALAEGFLKRG-ARLVTGGTDNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTP 420 (493)
T ss_pred HHHHHHHHHHHHHHHhcC-CCccCCCCCCCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccc
Confidence 888888999998887643 21 011111 111 222 45678899999843 22211 456999988
Q ss_pred c----CCCHHHHHHHHHHHHHHHHH
Q psy8733 588 N----AITVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 588 ~----a~~~~~~~~l~~~~~~~~~~ 608 (621)
. .|+.+|++.++++|.+..+.
T Consensus 421 A~ttrg~teedi~~iad~l~~~l~~ 445 (493)
T PRK13580 421 ALTTLGMGSDEMDEVAELIVKVLSN 445 (493)
T ss_pred hhhhcCCCHHHHHHHHHHHHHHHHh
Confidence 7 67899999999999987764
No 494
>PRK07179 hypothetical protein; Provisional
Probab=20.00 E-value=1.7e+02 Score=31.95 Aligned_cols=146 Identities=12% Similarity=0.126 Sum_probs=92.2
Q ss_pred HHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHH
Q psy8733 450 GVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNS 529 (621)
Q Consensus 450 ~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~ 529 (621)
|++..|..|-+|+ ++++++.++++++...... .....-.|++...+..+...++++.+ .+...++.
T Consensus 243 di~~~S~sK~~g~-~~G~l~~~~~~~~~~~~~~----------~~~~~~~t~~~~~~aa~~aal~~~~~---~~~~~~~l 308 (407)
T PRK07179 243 HFITASLAKAFAG-RAGIITCPRELAEYVPFVS----------YPAIFSSTLLPHEIAGLEATLEVIES---ADDRRARL 308 (407)
T ss_pred CEEEeechHhhhc-cCeEEEeCHHHHHHHHHhC----------cCeeeCCCCCHHHHHHHHHHHHHHhc---CHHHHHHH
Confidence 4444566777875 4778888998865432100 00011235555566666677887754 25567788
Q ss_pred HHHHHHHHHHHhccCCcc-cc-----cCCCCCc-ccHHHHHHHHHccCcccc-CC----CCCCccceeeccCCCHHHHHH
Q psy8733 530 LQKSVLLYQEIDNSDKFY-EC-----PVQAGFP-LDELFLKEAKAHNMIQLK-GH----RLVGGIRASIYNAITVDEAVI 597 (621)
Q Consensus 530 ~~ka~~lY~~id~~~~~~-~~-----~v~~~~~-~~~~~~~~~~~~~i~~~~-g~----~~~~~~r~~~~~a~~~~~~~~ 597 (621)
+++.+.+++.+.+. +|- .. .+.-..+ -...+.+.++++||.... .+ ...+.||++.-..+|.||++.
T Consensus 309 ~~~~~~l~~~L~~~-g~~v~~~~~i~~l~~~~~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~ 387 (407)
T PRK07179 309 HANARFLREGLSEL-GYNIRSESQIIALETGSERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDR 387 (407)
T ss_pred HHHHHHHHHHHHHc-CCCCCCCCCEEEEEeCCHHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHH
Confidence 88889999998764 220 00 1110111 224477889999996210 11 124679999999999999999
Q ss_pred HHHHHHHHHHHcC
Q psy8733 598 LVKFMKEFRHKHS 610 (621)
Q Consensus 598 l~~~~~~~~~~~~ 610 (621)
+++.|++...+..
T Consensus 388 ~~~~l~~~~~~~~ 400 (407)
T PRK07179 388 VLEVCREARDEVD 400 (407)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999877654
Done!