RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8733
(621 letters)
>gnl|CDD|235428 PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine
aminotransferase; Provisional.
Length = 360
Score = 453 bits (1168), Expect = e-156
Identities = 166/386 (43%), Positives = 219/386 (56%), Gaps = 87/386 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
V NF AGPA LP EVLE+ ++ LLD+ +G+SVME+SHRS ++ + + +A LREL
Sbjct: 4 VYNFSAGPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLREL--- 60
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
+N+P+NYK+LFLQGG + FA V MNL+G
Sbjct: 61 ----------------------------LNIPDNYKVLFLQGGASLQFAMVPMNLLGGGK 92
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
KADYV TGSWSKKA EA+KYG+VN+
Sbjct: 93 KADYVDTGSWSKKAIKEAKKYGEVNVA--------------------------------- 119
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
S + + IP W +A+Y++Y NET+DG EF+
Sbjct: 120 ---ASSED-----------------DGFTYIPPLDEWQLSDDAAYVHYTSNETIDGTEFH 159
Query: 292 YIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPI 351
+PD+ +PLV+DMSS+ LSR DVSKFG+I AGAQKNIGPAG+T+VIVREDLL ALP
Sbjct: 160 ELPDTGDVPLVADMSSDILSRPIDVSKFGLIYAGAQKNIGPAGLTIVIVREDLLGRALPS 219
Query: 352 TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411
P++ +K +ADN+S+YNTPPTF +++ VF W+K QGG+A ME+ + +K+ LLY ID
Sbjct: 220 IPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAID 279
Query: 412 NSDKFYECPVQAGCRSRMNVTDIFFT 437
+SD FY PV RSRMNV F
Sbjct: 280 SSD-FYRNPVAPEDRSRMNVP--FTL 302
Score = 248 bits (637), Expect = 5e-77
Identities = 93/175 (53%), Positives = 120/175 (68%), Gaps = 14/175 (8%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
FG+I AGAQKNIGPAG+T+VIVREDLL ALP P++ +K +ADN+S+YNTPPTF +++
Sbjct: 187 FGLIYAGAQKNIGPAGLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYL 246
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGF------P------ 556
VF W+K QGG+A ME+ + +K+ LLY ID+SD FY PV P
Sbjct: 247 AGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSD-FYRNPVAPEDRSRMNVPFTLADE 305
Query: 557 -LDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKHS 610
LD+ FL EAKA ++ LKGHR VGG+RASIYNA+ ++ LV FMKEF +H
Sbjct: 306 ELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFERRHG 360
Score = 34.3 bits (80), Expect = 0.19
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 1 MSSNFLSRKFDVSK 14
MSS+ LSR DVSK
Sbjct: 173 MSSDILSRPIDVSK 186
>gnl|CDD|99736 cd00611, PSAT_like, Phosphoserine aminotransferase (PSAT) family.
This family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The major group in this CD corresponds to
phosphoserine aminotransferase (PSAT). PSAT is active
as a dimer and catalyzes the conversion of
phosphohydroxypyruvate to phosphoserine.
Length = 355
Score = 441 bits (1137), Expect = e-152
Identities = 180/380 (47%), Positives = 230/380 (60%), Gaps = 83/380 (21%)
Query: 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVP 112
INF AGPA LP EVLE+ ++ LLD+ G+SVMEMSHRS D+ I N+ ++ LRELLN+P
Sbjct: 1 INFSAGPAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIP 60
Query: 113 NNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGK 172
+NYK+LFLQGG TG FAAV +NL+ G G
Sbjct: 61 DNYKVLFLQGGATGQFAAVPLNLL-------------------------------GDKGT 89
Query: 173 ADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVD 232
ADYVVTG+WS KAA EA++YG V +++
Sbjct: 90 ADYVVTGAWSAKAAKEAKRYGGVVVIV--------------------------------- 116
Query: 233 GSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY 292
AA E KY K IPD TW+ P+A+Y++YC NET+ GVEF+
Sbjct: 117 ------AAKEEGKYTK-------------IPDVETWDLAPDAAYVHYCSNETIHGVEFDE 157
Query: 293 IPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPIT 352
+PD+ G+PLV+DMSSN LSR DVSKFGVI AGAQKN+GPAG+TVVIVR+DLL A IT
Sbjct: 158 VPDTGGVPLVADMSSNILSRPIDVSKFGVIYAGAQKNLGPAGVTVVIVRKDLLGKARKIT 217
Query: 353 PTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412
P++ ++K +ADNNS+YNTPPTF ++++ V W+K QGG+ ME+ + QK+ LLY IDN
Sbjct: 218 PSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDN 277
Query: 413 SDKFYECPVQAGCRSRMNVT 432
S+ FY PV RSRMNV
Sbjct: 278 SNGFYRGPVDKRARSRMNVP 297
Score = 238 bits (610), Expect = 4e-73
Identities = 92/170 (54%), Positives = 118/170 (69%), Gaps = 13/170 (7%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
FGVI AGAQKN+GPAG+TVVIVR+DLL A ITP++ ++K +ADNNS+YNTPPTF +++
Sbjct: 184 FGVIYAGAQKNLGPAGVTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYM 243
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQ-------------AGF 555
+ V W+K QGG+ ME+ + QK+ LLY IDNS+ FY PV
Sbjct: 244 MGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKE 303
Query: 556 PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEF 605
L++ FLKEA+A MI LKGHR VGGIRASIYNA++++ L FMKEF
Sbjct: 304 ELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF 353
Score = 35.7 bits (83), Expect = 0.067
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 1 MSSNFLSRKFDVSK 14
MSSN LSR DVSK
Sbjct: 170 MSSNILSRPIDVSK 183
>gnl|CDD|130431 TIGR01364, serC_1, phosphoserine aminotransferase. This model
represents the common form of the phosphoserine
aminotransferase SerC. The phosphoserine
aminotransferase of the archaeon Methanosarcina barkeri
and putative phosphoserine aminotransferase of
Mycobacterium tuberculosis are represented by separate
models. All are members of the class V aminotransferases
(pfam00266) [Amino acid biosynthesis, Serine family].
Length = 349
Score = 406 bits (1045), Expect = e-138
Identities = 166/373 (44%), Positives = 217/373 (58%), Gaps = 84/373 (22%)
Query: 60 AKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILF 119
A LP EVLE+ ++ LL++ TG+SVME+SHRS ++ + N+ ++ LRELL
Sbjct: 1 AALPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELL---------- 50
Query: 120 LQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTG 179
N+P+NY++LFLQGG TG FAAV +NL+ ADY+VTG
Sbjct: 51 ---------------------NIPDNYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTG 89
Query: 180 SWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKA 239
+WSKKAA EA+KYG VN+V S K
Sbjct: 90 AWSKKAAKEAKKYGVVNVV------------------------------------ASGKE 113
Query: 240 AAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNYIPDSQGI 299
Y IPD STW +A+Y++YC NET+ GVEF +PD +
Sbjct: 114 -----------------GNYTKIPDPSTWEISEDAAYVHYCANETIHGVEFRELPDVKNA 156
Query: 300 PLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFK 359
PLV+DMSSN LSR DVSKFG+I AGAQKNIGPAG+TVVIVR+DLL A ITP++ ++K
Sbjct: 157 PLVADMSSNILSRPIDVSKFGLIYAGAQKNIGPAGLTVVIVRKDLLGRASRITPSMLNYK 216
Query: 360 INADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419
I+A+N+S+YNTPPTF ++V VF W+K QGG+ +E+ + K+ LLY IDNS+ FY
Sbjct: 217 IHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRN 276
Query: 420 PVQAGCRSRMNVT 432
PV RSRMNV
Sbjct: 277 PVDPRNRSRMNVV 289
Score = 242 bits (620), Expect = 1e-74
Identities = 90/174 (51%), Positives = 120/174 (68%), Gaps = 13/174 (7%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
FG+I AGAQKNIGPAG+TVVIVR+DLL A ITP++ ++KI+A+N+S+YNTPPTF ++V
Sbjct: 176 FGLIYAGAQKNIGPAGLTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYV 235
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQ-------------AGF 555
VF W+K QGG+ +E+ + K+ LLY IDNS+ FY PV
Sbjct: 236 SGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNE 295
Query: 556 PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609
L++ FLKEA+ ++ LKGHR VGG+RASIYNA+ ++ LV FMKEF+ KH
Sbjct: 296 ELEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFQKKH 349
Score = 33.8 bits (78), Expect = 0.23
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 1 MSSNFLSRKFDVSK 14
MSSN LSR DVSK
Sbjct: 162 MSSNILSRPIDVSK 175
>gnl|CDD|178071 PLN02452, PLN02452, phosphoserine transaminase.
Length = 365
Score = 379 bits (976), Expect = e-127
Identities = 157/380 (41%), Positives = 211/380 (55%), Gaps = 84/380 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
V NF AGPA LP VL + + L ++E +G+SVMEMSHR ++ I +A LRELL++
Sbjct: 8 VFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDI 67
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P+NY++LFLQGG + FAA+ +NL
Sbjct: 68 PDNYEVLFLQGGASTQFAAIPLNLCKP-------------------------------GD 96
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
KAD+VVTGSWSKKAA EA+KY K N++
Sbjct: 97 KADFVVTGSWSKKAAKEAKKYCKTNVI--------------------------------- 123
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
S K KY IP S W P+A +++ C NET+ GVEF
Sbjct: 124 ---ASGKD-----------------EKYTKIPSVSEWELTPDAKFVHICANETIHGVEFK 163
Query: 292 YIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPI 351
PD +PLV+DMSSNFLS+ DVSK+GVI AGAQKN+GP+G+T+VI+R+DL+ A PI
Sbjct: 164 DYPDVGNVPLVADMSSNFLSKPVDVSKYGVIYAGAQKNVGPSGVTIVIIRKDLIGNARPI 223
Query: 352 TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411
TP + +KI+A+N+S+YNTPP F +++ VF + QGGL ME+ +++K+ LLY ID
Sbjct: 224 TPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAID 283
Query: 412 NSDKFYECPVQAGCRSRMNV 431
S+ FY CPV+ RS MNV
Sbjct: 284 ESNGFYVCPVEKSVRSLMNV 303
Score = 222 bits (568), Expect = 6e-67
Identities = 84/175 (48%), Positives = 118/175 (67%), Gaps = 13/175 (7%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
+GVI AGAQKN+GP+G+T+VI+R+DL+ A PITP + +KI+A+N+S+YNTPP F +++
Sbjct: 191 YGVIYAGAQKNVGPSGVTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYM 250
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGF------------- 555
VF + QGGL ME+ +++K+ LLY ID S+ FY CPV+
Sbjct: 251 CGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGS 310
Query: 556 PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKHS 610
L+ F+KEA M+QLKGHR VGG+RASIYNA+ + LV FMK+F+ KH+
Sbjct: 311 ELEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 365
>gnl|CDD|224843 COG1932, SerC, Phosphoserine aminotransferase [Coenzyme metabolism
/ Amino acid transport and metabolism].
Length = 365
Score = 341 bits (877), Expect = e-113
Identities = 158/389 (40%), Positives = 202/389 (51%), Gaps = 89/389 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
V NF AGPA LP EVL++ ++ LLD+ G+SVME+SHRS ++ + + + LRELLN+
Sbjct: 6 VYNFSAGPAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNI 65
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P++YK+LFLQGG TG FA MNL+
Sbjct: 66 PDDYKVLFLQGGATGQFAMAPMNLL--------------------------------GKR 93
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
DYV TG+WS+ A EA+K GK
Sbjct: 94 GTDYVDTGAWSEFAIKEAKKVGKQP----------------------------------- 118
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
K A E+ G Y SIPD S W+ +Y+++C NET+ GVE
Sbjct: 119 -----KLIDARIEEAG-----------YGSIPDLSKWDFSDNDAYVHFCWNETISGVEVP 162
Query: 292 YIPD-SQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALP 350
+PD LV+D SS LSR DVSK+ VI AGAQKN+GPAG+TVVIVR DLLE A
Sbjct: 163 ELPDIGSDGLLVADASSAILSRPIDVSKYDVIYAGAQKNLGPAGLTVVIVRPDLLERAES 222
Query: 351 IT-PTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409
T P++F + +ADN S+YNTPPTF +++ VF W+K QGGL +E + K+ LLY
Sbjct: 223 YTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDW 282
Query: 410 IDNSDKFYECPVQAGCRSRMNVTDIFFTF 438
ID SD FY V RSRMNVT FT
Sbjct: 283 IDKSD-FYRNLVAKANRSRMNVT---FTL 307
Score = 195 bits (497), Expect = 1e-56
Identities = 83/176 (47%), Positives = 108/176 (61%), Gaps = 15/176 (8%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPIT-PTVFHFKINADNNSVYNTPPTFVVH 507
+ VI AGAQKN+GPAG+TVVIVR DLLE A T P++F + +ADN S+YNTPPTF +
Sbjct: 191 YDVIYAGAQKNLGPAGLTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWY 250
Query: 508 VIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAG----------FP- 556
++ VF W+K QGGL +E + K+ LLY ID SD FY V
Sbjct: 251 LLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSD-FYRNLVAKANRSRMNVTFTLVD 309
Query: 557 --LDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKHS 610
LD+ F+ EA+A +I LKGHR VGG+RASIYNA+ +++ L FM F +
Sbjct: 310 AELDKGFVAEAEAAGLIYLKGHRSVGGLRASIYNAVPLEDVEALTDFMDWFEETYK 365
Score = 29.2 bits (66), Expect = 6.4
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 1 MSSNFLSRKFDVSKL 15
SS LSR DVSK
Sbjct: 177 ASSAILSRPIDVSKY 191
>gnl|CDD|183540 PRK12462, PRK12462, phosphoserine aminotransferase; Provisional.
Length = 364
Score = 257 bits (658), Expect = 3e-80
Identities = 113/381 (29%), Positives = 179/381 (46%), Gaps = 84/381 (22%)
Query: 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVP 112
+NF GP LP VLE+V++ +++ TG+SV+ MSHRS+ ++ + +A LR+LL +P
Sbjct: 6 LNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIP 65
Query: 113 NNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGK 172
+ Y ++FLQGG + F+ + MN
Sbjct: 66 DEYGVVFLQGGSSLQFSMIPMNF------------------------------SRPGAAA 95
Query: 173 ADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVD 232
+YV TG WS+KA EA + + +V
Sbjct: 96 PEYVTTGYWSRKAIGEASRVAAMRVV---------------------------------- 121
Query: 233 GSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY 292
W A+ Y ++P + + D A + +Y NETV+G++F
Sbjct: 122 --WDGAASG-----------------YRTLPSLAELDWDARAPFRHYVSNETVEGLQFPD 162
Query: 293 IPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPIT 352
PL++DMSS+F+SR FDV +G++ A AQKN+GPAG+TV I+R LLE
Sbjct: 163 AAGLPDSPLIADMSSDFMSRPFDVEAYGMVYAHAQKNLGPAGVTVAIIRRALLERVPDTL 222
Query: 353 PTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQ-GGLAKMEQNSLQKSVLLYQEID 411
P + F+ + ++ S YNTPP F ++V+ V WI+ + GG+ M + +K+ +LY +D
Sbjct: 223 PPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLD 282
Query: 412 NSDKFYECPVQAGCRSRMNVT 432
++ +C RS MNV
Sbjct: 283 ALNEVIDCHAHRAARSTMNVA 303
Score = 152 bits (386), Expect = 5e-41
Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 14/176 (7%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
+G++ A AQKN+GPAG+TV I+R LLE P + F+ + ++ S YNTPP F ++V
Sbjct: 189 YGMVYAHAQKNLGPAGVTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYV 248
Query: 509 IQRVFAWIKRQ-GGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAG----------FP- 556
+ V WI+ + GG+ M + +K+ +LY +D ++ +C F
Sbjct: 249 MALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQ 308
Query: 557 --LDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKHS 610
LD LF +++ L GHR +GGIRAS+YNA++ L F+K+F +H+
Sbjct: 309 PRLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFLKDFAIRHA 364
>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 370
Score = 119 bits (301), Expect = 2e-29
Identities = 60/406 (14%), Positives = 107/406 (26%), Gaps = 104/406 (25%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
+ A + P+ VL+ ++E DY + H + T+ + + + E +N
Sbjct: 1 IYLDSAATTQKPQAVLDALQEYYTDYNGNVHR--GVHHLGKEATQAYEEAREKVAEFINA 58
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P++ +I+F G VA++L S L+ G
Sbjct: 59 PSDEEIIFTSGTTEA-INLVAISLGRS------------LKPGDE--------------- 90
Query: 172 KADYVVTGSWS-KKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNET 230
+ E K + + V
Sbjct: 91 -ILVTEMEHHANLVPWQELAKRTGATVRVIPV---------------------------D 122
Query: 231 VDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGV-- 288
+G D P + V G
Sbjct: 123 PNGLLD--------------------------LDALEKLLTPRTKLVAITHVSNVTGTVN 156
Query: 289 ---EFNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGV--IIAGAQKNIGPAGITVVIVRED 343
E + G +V D + R DV GV + K GP GI V+ R D
Sbjct: 157 PVEEIGKLAHEYGALVVVDAAQAVGHRPIDVQALGVDFLAFSGHKLYGPTGIGVLYGRRD 216
Query: 344 LLEYALPITPTVFHFKINADNNSVYN---------TPPTFVVHVIQRVFAWIKRQGGLAK 394
LLE P+ + + + TP + + ++ GL
Sbjct: 217 LLEKLPPLLGGGGMIDTVSLQETTFADAPSKFEAGTPNIAGIIGLGAALDYLAE-IGLEA 275
Query: 395 MEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSH 440
+E++ + + LY+ + R ++ F H
Sbjct: 276 IEKHERELAAYLYERLLAIP-GIRLYGPPAERRP-SIISFNFPGVH 319
Score = 60.3 bits (147), Expect = 1e-09
Identities = 32/171 (18%), Positives = 54/171 (31%), Gaps = 31/171 (18%)
Query: 454 AGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYN---------TPPTF 504
K GP GI V+ R DLLE P+ + + + TP
Sbjct: 197 FSGHKLYGPTGIGVLYGRRDLLEKLPPLLGGGGMIDTVSLQETTFADAPSKFEAGTPNIA 256
Query: 505 VVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD--KFYECPVQA-----GFPL 557
+ + ++ GL +E++ + + LY+ + + Y P + F
Sbjct: 257 GIIGLGAALDYLAE-IGLEAIEKHERELAAYLYERLLAIPGIRLYGPPAERRPSIISFNF 315
Query: 558 D-------ELFLKEAKAH-------NMIQLKGHRLVGGIRASIYNAITVDE 594
L E + L G +RAS+Y T +E
Sbjct: 316 PGVHPHDVATLLDERGIAVRSGHHCAQPLMVRLGLGGTLRASLYFYNTEEE 366
>gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal
aspartate aminotransferase [Amino acid transport and
metabolism].
Length = 383
Score = 54.9 bits (133), Expect = 6e-08
Identities = 73/350 (20%), Positives = 120/350 (34%), Gaps = 110/350 (31%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
GP +P VL + + + HRS D+ I + LR++ N
Sbjct: 9 LTPGPVPVPPRVLLAMARPM------------VGHRSPDFVGIMKEVLEKLRKVFGTE-N 55
Query: 115 YKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKAD 174
++ L G GT M AAVA +L+ K
Sbjct: 56 GDVVLLSGSGTL------------------------------AMEAAVA-SLVEPGDKVL 84
Query: 175 YVVTGSWSKKAAAEAEKYG-KVNLVIPKVSKYVSIPDQ--STWNRDPEASYLYYCDNETV 231
VV G + ++ A AE+YG +V ++ + + V P++ ++DP+ + NET
Sbjct: 85 VVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVD-PEEVEEALDKDPDIKAVAVVHNETS 143
Query: 232 DGSWS--KKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289
G + K+ A A+++G L+I VD V
Sbjct: 144 TGVLNPLKEIAKAAKEHGA--LLI-------------------------------VDAV- 169
Query: 290 FNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGV--IIAGAQKNIG-PAGITVVIVREDLLE 346
S+ V ++G+ I G+QK +G P G+ V V E LE
Sbjct: 170 -----------------SSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALE 212
Query: 347 YALPITPTVFHF------KINADNNSVYNTPPTFVVHVIQRVFAWIKRQG 390
F+ K S TPP +++ ++ I +G
Sbjct: 213 AIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEG 262
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 46.2 bits (110), Expect = 8e-06
Identities = 38/204 (18%), Positives = 54/204 (26%), Gaps = 53/204 (25%)
Query: 143 PNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKV 202
P N K +F GTG A + L+G + G S+ A K
Sbjct: 15 PGNDKAVF-VPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPV------ 67
Query: 203 SKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSI 262
++ G E + V L++
Sbjct: 68 ---------------------PVPVDDAGYGGLDVAILEELKAKPNVALIVI-------- 98
Query: 263 PDQSTWNRDPEASYLYYCDNETVDGVEFNYIPDSQGIPLVSDMSSNFLSRKF-----DVS 317
T N S V E I GI L+ D +S +
Sbjct: 99 ----TPN---TTSGGVL-----VPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEG 146
Query: 318 KFGVIIAGAQKNIGPAGITVVIVR 341
V+ KN+G G VVIV+
Sbjct: 147 GADVVTFSLHKNLGGEGGGVVIVK 170
Score = 29.3 bits (66), Expect = 4.4
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 447 FFFGVIIAGAQKNIGPAGITVVIVR 471
V+ KN+G G VVIV+
Sbjct: 146 GGADVVTFSLHKNLGGEGGGVVIVK 170
>gnl|CDD|130433 TIGR01366, serC_3, phosphoserine aminotransferase, putative. This
model represents a putative variant form of the serine
biosynthesis enzyme phosphoserine aminotransferase, as
found in Mycobacterium tuberculosis and related high-GC
Gram-positive bacteria [Amino acid biosynthesis, Serine
family].
Length = 361
Score = 46.8 bits (111), Expect = 2e-05
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
FG+GP+K+ E L+ L T S+ SHR A + + L EL ++P+
Sbjct: 7 FGSGPSKVRLEQLQ----ALTT---TAASLFGTSHRQAPVKNLVGRVREGLAELFSLPDG 59
Query: 115 YKILFLQGGGTGMFAAVAMNLI 136
Y+++ GG T + A LI
Sbjct: 60 YEVILGNGGATAFWDAATFGLI 81
Score = 29.1 bits (65), Expect = 7.5
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 483 PTVFHFKINADN---NSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLY 537
P DN N YNTP + ++ W+ GGL + S LY
Sbjct: 217 PEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLY 274
>gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT)
family. This family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The major groups in this CD correspond to
alanine-glyoxylate aminotransferase (AGAT),
serine-glyoxylate aminotransferase (SGAT), and
3-hydroxykynurenine transaminase (HKT). AGAT is a
homodimeric protein, which catalyses the transamination
of glyoxylate to glycine, and SGAT converts serine and
glyoxylate to hydroxypyruvate and glycine. HKT catalyzes
the PLP-dependent transamination of 3-hydroxykynurenine,
a potentially toxic metabolite of the kynurenine
pathway.
Length = 356
Score = 46.5 bits (111), Expect = 3e-05
Identities = 63/347 (18%), Positives = 109/347 (31%), Gaps = 104/347 (29%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
GP+ +P VL+ + +L HRS ++ + ++ LR + N
Sbjct: 3 LIPGPSNVPPRVLKAMNRPMLG------------HRSPEFLALMDEILEGLRYVFQTENG 50
Query: 115 YKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKAD 174
L+S S GTG A NL+ K
Sbjct: 51 ---------------LTF--LLSGS---------------GTGAMEAALSNLLEPGDKVL 78
Query: 175 YVVTGSWSKKAAAEAEKYG-KVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 233
V G + + A AE+YG V++V + VS + + + + NET G
Sbjct: 79 VGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTG 138
Query: 234 SWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNYI 293
+ + + + +A + VD V
Sbjct: 139 VLNP---------------LEGIGALA---------KKHDALLI-------VDAV----- 162
Query: 294 PDSQGIPLVSDMSSNFLSRKFDVSKFGV--IIAGAQKNIG-PAGITVVIVREDLLEYALP 350
S+ F + ++GV G+QK +G P G+ + E LE
Sbjct: 163 -------------SSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKK 209
Query: 351 ITPT-VFHFKINA-----DNNSVY-NTPPTFVVHVIQRVFAWIKRQG 390
T F+F + Y +TPP +++ ++ I +G
Sbjct: 210 KTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEG 256
>gnl|CDD|213793 TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase.
This family includes a number of 2-aminoethylphosphonate
aminotransferases, some of which are indicated to
operate in the catabolism of 2-aminoethylphosphonate
(AEP) and others which are involved in the biosynthesis
of the same compound. The catabolic enzyme (PhnW, ) is
known to use pyruvate:alanine as the transfer partner
and is modeled by the equivalog-level TIGR02326. The
PhnW family is apparently a branch of a larger tree
including genes (AepZ) adjacent to others responsible
for the biosynthesis of phosphonoacetaldehyde. The
identity of the transfer partner is unknown for these
enzymes and considering the reversed flux compared to
PhnW, it may very well be different.
Length = 355
Score = 41.2 bits (97), Expect = 0.001
Identities = 47/210 (22%), Positives = 74/210 (35%), Gaps = 60/210 (28%)
Query: 145 NYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSK 204
N+ + LQG GT A +L+ R GK ++ G++ ++ A E G IP
Sbjct: 49 NHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGERLAKICEYLG-----IPHTDL 103
Query: 205 YVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPD 264
S P+ + + A A
Sbjct: 104 NFS------EYEPPDLNRI---------------EEALAA-------------------- 122
Query: 265 QSTWNRDPEASYLYYCDNETVDGV-----EFNYIPDSQGIPLVSDMSSNFLSRKFDVSKF 319
DP+ +++ +ET G+ + S G L+ D S+F + D+ +
Sbjct: 123 ------DPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEEL 176
Query: 320 GV--IIAGAQKNI-GPAGITVVIVREDLLE 346
V +IA A K + G G VI R DLLE
Sbjct: 177 DVDALIASANKCLEGVPGFGFVIARRDLLE 206
>gnl|CDD|235103 PRK03080, PRK03080, phosphoserine aminotransferase; Provisional.
Length = 378
Score = 39.0 bits (92), Expect = 0.006
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Query: 54 NFGAGP-AKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVP 112
F +GP K P LE + + LL G SHR + RELL++P
Sbjct: 15 RFSSGPCKKRPGWQLEALADALL-----G-----RSHRQKPVKALLKRVIEGTRELLSLP 64
Query: 113 NNYKILFLQGGGTGMFAAVAMNLI 136
Y++ + G TG + +L+
Sbjct: 65 EGYEVGIVPGSDTGAWEMALWSLL 88
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 36.9 bits (86), Expect = 0.028
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 298 GIPLVSDMSSNFLSRKFDVSKFGV--IIAGAQKNI-GPAGITVVIVREDLLEYALPITPT 354
G ++ D + DV + G + K + GP GI V+ VR++LLE P
Sbjct: 192 GALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGG 251
Query: 355 VFHFK-INADNNSVYNTPP 372
+ ++ D P
Sbjct: 252 GGMIEYVSRDEGVTLAELP 270
Score = 28.8 bits (65), Expect = 9.7
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 461 GPAGITVVIVREDLLEYALPITPTVFHFK-INADNNSVYNTPP 502
GP GI V+ VR++LLE P + ++ D P
Sbjct: 228 GPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELP 270
>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional.
Length = 334
Score = 35.4 bits (82), Expect = 0.078
Identities = 37/146 (25%), Positives = 56/146 (38%), Gaps = 39/146 (26%)
Query: 153 GGGTGMFA-----AVAMNLIGRT---------GK-ADYVVTGSWSKKAAAEAEKYGKVNL 197
GGG G+ A A+ +I T K ADYV+ GS K + E +K G ++
Sbjct: 172 GGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKYADYVIVGS---KFSEEVKKIGGADI 228
Query: 198 VIPKVSKYVSIPDQS----TW--------NRDPEAS------YLYYCDNETVDG-SWSKK 238
VI V ++S N DP + Y+ D E + S +K+
Sbjct: 229 VIETVGTPTL--EESLRSLNMGGKIIQIGNVDPSPTYSLRLGYIILKDIEIIGHISATKR 286
Query: 239 AAAEAEKYGKVNLVIPKVSKYVSIPD 264
EA K + P + VS+ +
Sbjct: 287 DVEEALKLVAEGKIKPVIGAEVSLSE 312
>gnl|CDD|131379 TIGR02326, transamin_PhnW, 2-aminoethylphosphonate--pyruvate
transaminase. Members of this family are
2-aminoethylphosphonate--pyruvate transaminase. This
enzyme acts on the most common type of naturally
occurring phosphonate. It interconverts
2-aminoethylphosphonate plus pyruvate with
2-phosphonoacetaldehyde plus alanine. The enzyme
phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually
encoded by an adjacent gene, then cleaves the C-P bond
of phosphonoacetaldehyde, adding water to yield
acetaldehyde plus inorganic phosphate. Species with this
pathway generally have an identified phosphonate ABC
transporter but do not also have the multisubunit C-P
lysase complex as found in Escherichia coli [Central
intermediary metabolism, Phosphorus compounds].
Length = 363
Score = 35.1 bits (81), Expect = 0.089
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 146 YKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKY 205
Y + LQG GT AV + + + GK V+ G++ + AE G + V+ +
Sbjct: 54 YTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYLGIPHHVV--DTGE 111
Query: 206 VSIPD----QSTWNRDPEASYLYYCDNETVDGSWS--KKAAAEAEKYGKVNLVIPKVSKY 259
V PD ++ DP +++ ET G + + A A ++GKV ++ +S +
Sbjct: 112 VEPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKV-TIVDAMSSF 170
Query: 260 VSIP 263
IP
Sbjct: 171 GGIP 174
>gnl|CDD|130432 TIGR01365, serC_2, phosphoserine aminotransferase, Methanosarcina
type. This model represents a variant form of the
serine biosynthesis enzyme phosphoserine
aminotransferase, as found in a small number of
distantly related species, including Caulobacter
crescentus, Mesorhizobium loti, and the archaeon
Methanosarcina barkeri [Amino acid biosynthesis, Serine
family].
Length = 374
Score = 34.5 bits (79), Expect = 0.14
Identities = 45/215 (20%), Positives = 81/215 (37%), Gaps = 22/215 (10%)
Query: 234 SWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF--- 290
S+ K + K K+ V ++Y +PD + + + + N T GV
Sbjct: 91 SFGKGWVTDVTKQLKLPDVRVLEAEYGKLPDLKKVDFKNDVVFTW---NGTTSGVRVPNG 147
Query: 291 NYIP-DSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIV-------RE 342
++IP D +G+ + D +S ++ D K V+ QK +G G +++ R
Sbjct: 148 DFIPADREGLTIC-DATSAAFAQDLDYHKLDVVTFSWQKVLGGEGAHGMLILSPRAVARL 206
Query: 343 DLLEYALPITPTVFHF----KINAD--NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKME 396
+ A P+ P +F K+N S NTP V W + GGL +
Sbjct: 207 ESYTPAWPL-PKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLI 265
Query: 397 QNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNV 431
+ +L + ++ + RS +V
Sbjct: 266 ARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSV 300
Score = 31.1 bits (70), Expect = 1.6
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 22/89 (24%)
Query: 54 NFGAGP-AKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAA----LREL 108
F +GP AK P +EE+K + SHRS K+ + A RE+
Sbjct: 6 CFSSGPCAKRPGWSIEELKNA----------PLGRSHRS----KLGKEKLAEAIKKTREM 51
Query: 109 LNVPNNYKILFLQGGGTGMFAAVAMNLIS 137
L VP +Y I + TG AV M L S
Sbjct: 52 LGVPADYLIGIVPASDTG---AVEMALWS 77
>gnl|CDD|241249 cd01213, PTB_tensin, Tensin Phosphotyrosine-binding (PTB) domain.
Tensin is a a focal adhesion protein, which contains a
C-terminal SH2 domain followed by a PTB domain. PTB
domains have a common PH-like fold and are found in
various eukaryotic signaling molecules. This domain was
initially shown to binds peptides with a NPXY motif with
differing requirements for phosphorylation of the
tyrosine, although more recent studies have found that
some types of PTB domains can bind to peptides lack
tyrosine residues altogether. In contrast to SH2
domains, which recognize phosphotyrosine and adjacent
carboxy-terminal residues, PTB-domain binding
specificity is conferred by residues amino-terminal to
the phosphotyrosine. PTB domains are classified into
three groups: phosphotyrosine-dependent Shc-like,
phosphotyrosine-dependent IRS-like, and
phosphotyrosine-independent Dab-like PTB domains. This
cd is part of the Dab-like subgroup.
Length = 136
Score = 29.5 bits (67), Expect = 2.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 343 DLLEYALPITPTVFHFKINAD 363
+ LE TPTV HFK++
Sbjct: 29 ETLERDPLPTPTVVHFKVSEQ 49
Score = 29.5 bits (67), Expect = 2.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 473 DLLEYALPITPTVFHFKINAD 493
+ LE TPTV HFK++
Sbjct: 29 ETLERDPLPTPTVVHFKVSEQ 49
>gnl|CDD|235306 PRK04531, PRK04531, acetylglutamate kinase; Provisional.
Length = 398
Score = 30.4 bits (69), Expect = 2.7
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 97 INNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQG 153
+N + A EL++ YKI+FL G G G+ A LI SS+N+ Y L Q
Sbjct: 146 LNINADVAANELVSALQPYKIIFLTGTG-GLLDADG-KLI-SSINLSTEYDHLMQQP 199
>gnl|CDD|222536 pfam14092, DUF4270, Domain of unknown function (DUF4270). This
family of lipoproteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are typically between 444 and 534 amino
acids in length.
Length = 432
Score = 30.4 bits (69), Expect = 3.6
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 94 YTKINND-TQAALRELLNVPNNYKILFLQGGGTGMFA 129
+ I ND T L LLN +L+ GG G+F
Sbjct: 242 FNTIENDRTGTPLASLLNPSEEDNRTYLK-GGAGIFT 277
>gnl|CDD|187703 cd09279, RNase_HI_archaeal_like, RNAse HI family that includes
Archaeal RNase HI. Ribonuclease H (RNase H) is
classified into two evolutionarily unrelated families,
type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and
viral RNase H) and type 2 (prokaryotic RNase HII and
HIII, and eukaryotic RNase H2). RNase H is an
endonuclease that cleaves the RNA strand of an RNA/DNA
hybrid in a sequence non-specific manner. RNase H is
involved in DNA replication, repair and transcription.
RNase H is widely present in various organisms,
including bacteria, archaea and eukaryotes and most
prokaryotic and eukaryotic genomes contain multiple
RNase H genes. Despite the lack of amino acid sequence
homology, Type 1 and type 2 RNase H share a main-chain
fold and steric configurations of the four acidic
active-site (DEDD) residues and have the same catalytic
mechanism and functions in cells. One of the important
functions of RNase H is to remove Okazaki fragments
during DNA replication. Most archaeal genomes contain
only type 2 RNase H (RNase HII); however, a few contain
RNase HI as well. Although archaeal RNase HI sequences
conserve the DEDD active-site motif, they lack other
common features important for catalytic function, such
as the basic protrusion region. Archaeal RNase HI
homologs are more closely related to retroviral RNase HI
than bacterial and eukaryotic type I RNase H in
enzymatic properties.
Length = 128
Score = 28.6 bits (65), Expect = 3.9
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 324 AGAQKNIGPAGITVVIVRED--LLEYALPITPTVFHFKINADNN 365
++ N GPAG +VI D +LE ++P+ A NN
Sbjct: 7 GASRGNPGPAGAGIVIKSPDGEVLEQSIPL-------GFPATNN 43
Score = 28.6 bits (65), Expect = 3.9
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 454 AGAQKNIGPAGITVVIVRED--LLEYALPITPTVFHFKINADNN 495
++ N GPAG +VI D +LE ++P+ A NN
Sbjct: 7 GASRGNPGPAGAGIVIKSPDGEVLEQSIPL-------GFPATNN 43
>gnl|CDD|181611 PRK09014, rfaH, transcriptional activator RfaH; Provisional.
Length = 162
Score = 28.7 bits (65), Expect = 6.4
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 39 RIHTTAMSS--AAHPVINFGAGPAKLPREVLEEVKE 72
IHTT + S + FGA PA +P +V+ ++
Sbjct: 63 VIHTTTIRSTRGVSHFVRFGAQPAIVPSDVIYQLSV 98
>gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A
[Amino acid transport and metabolism].
Length = 648
Score = 28.9 bits (65), Expect = 9.4
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 60 AKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKI 97
L LE ++E + +++ V + S D T+I
Sbjct: 370 LDLFGGELEVIREQPVQFDADNYEVEQFFATSKDGTRI 407
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.390
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,960,200
Number of extensions: 3180134
Number of successful extensions: 2979
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2930
Number of HSP's successfully gapped: 61
Length of query: 621
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 518
Effective length of database: 6,369,140
Effective search space: 3299214520
Effective search space used: 3299214520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)