RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8733
(621 letters)
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE
PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4
PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A*
2bia_A* 2bie_A* 2big_A*
Length = 360
Score = 472 bits (1218), Expect = e-164
Identities = 129/386 (33%), Positives = 196/386 (50%), Gaps = 86/386 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
V NF AGP+ LP+ LE ++ LL++ T +SVME+SHRS Y +++ Q LREL
Sbjct: 4 VFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLREL--- 60
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
+ +PN+Y+ILFLQGG + F + MNL+ +
Sbjct: 61 ----------------------------LQIPNDYQILFLQGGASLQFTMLPMNLLTKGT 92
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
+YV+TGSWS+KA EA+ G+ ++
Sbjct: 93 IGNYVLTGSWSEKALKEAKLLGETHIA--------------------------------- 119
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
S KA + Y SIPD S + + +YL+ N T+ G ++
Sbjct: 120 ---ASTKA-----------------NSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQ 159
Query: 292 YIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPI 351
P+ PL++DMSS+ LSR V++FG+I AGAQKN+GP+G+TVVIV++DLL +
Sbjct: 160 NFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQ 219
Query: 352 TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411
PT+ + + ++S+YNTPPTF +++++ V WIK GG + + + +K+ ++Y ID
Sbjct: 220 VPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTID 279
Query: 412 NSDKFYECPVQAGCRSRMNVTDIFFT 437
S+ FY + G RS MNVT F
Sbjct: 280 ESNGFYVGHAEKGSRSLMNVT--FNL 303
Score = 257 bits (659), Expect = 1e-80
Identities = 67/173 (38%), Positives = 104/173 (60%), Gaps = 13/173 (7%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
FG+I AGAQKN+GP+G+TVVIV++DLL + PT+ + + ++S+YNTPPTF +++
Sbjct: 187 FGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYM 246
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGF------------- 555
++ V WIK GG + + + +K+ ++Y ID S+ FY + G
Sbjct: 247 LRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNE 306
Query: 556 PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHK 608
L++ FL +AK + L GHR VGG RASIYNA+ +D + L + M +F+
Sbjct: 307 ELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN 359
Score = 34.8 bits (81), Expect = 0.085
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 1 MSSNFLSRKFDVSK 14
MSS+ LSR V++
Sbjct: 173 MSSDILSRPLKVNQ 186
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate,
pyridine serine biosynthesis, amino-acid biosynthesis,
pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans}
SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Length = 362
Score = 472 bits (1217), Expect = e-164
Identities = 133/386 (34%), Positives = 193/386 (50%), Gaps = 86/386 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
NF AGPA LP EVLE + +DY+ TG+S+MEMSHR A Y ++N+ QA L L
Sbjct: 5 AYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLAL--- 61
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
+ P YK+LF+QGG + FA + MN +
Sbjct: 62 ----------------------------LGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQ 93
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
A+YV+TGSW+ KA EA+ G ++
Sbjct: 94 TANYVMTGSWASKALKEAKLIGDTHVA--------------------------------- 120
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
S +A S Y+++P A+YL+ NET++G +F
Sbjct: 121 ---ASSEA-----------------SNYMTLPKLQEIQLQDNAAYLHLTSNETIEGAQFK 160
Query: 292 YIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPI 351
PD+ +PL+ DMSS+ LSR FD+++FG++ AGAQKN+GP+G+TVVIVREDL+ +
Sbjct: 161 AFPDTGSVPLIGDMSSDILSRPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKH 220
Query: 352 TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411
PT+ + NNS+YNTPP+F ++++ V WI+ +GGL ++Q + +K+ L+Y ID
Sbjct: 221 LPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAID 280
Query: 412 NSDKFYECPVQAGCRSRMNVTDIFFT 437
S FY V RS MN+T F
Sbjct: 281 QSGGFYRGCVDVDSRSDMNIT--FRL 304
Score = 259 bits (665), Expect = 2e-81
Identities = 70/174 (40%), Positives = 105/174 (60%), Gaps = 13/174 (7%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
FG++ AGAQKN+GP+G+TVVIVREDL+ + PT+ + NNS+YNTPP+F +++
Sbjct: 188 FGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYM 247
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGF------------- 555
+ V WI+ +GGL ++Q + +K+ L+Y ID S FY V
Sbjct: 248 VNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASE 307
Query: 556 PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609
L++ F+K ++ + LKGHR VGG+RASIYNA+ + LV+FM+ F+
Sbjct: 308 ELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRSR 361
Score = 34.4 bits (80), Expect = 0.087
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 1 MSSNFLSRKFDVSK 14
MSS+ LSR FD+++
Sbjct: 174 MSSDILSRPFDLNQ 187
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for
structural genomics of infec diseases, csgid; 2.25A
{Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Length = 386
Score = 466 bits (1201), Expect = e-161
Identities = 138/400 (34%), Positives = 193/400 (48%), Gaps = 91/400 (22%)
Query: 39 RIHTTAMSSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKIN 98
+ AM+ V NF +GPA LP EVL+ ++ L D+ G SVME+SHR ++ ++
Sbjct: 19 YFQSNAMA----QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVA 74
Query: 99 NDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGM 158
+ + R+L +N+P+NYK+LF GGG G
Sbjct: 75 EEAEQDFRDL-------------------------------LNIPSNYKVLFCHGGGRGQ 103
Query: 159 FAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP 218
FA V +NL+G ADYV G W+ A EA+KY ++ K++
Sbjct: 104 FAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQIIDAKITV-------------- 149
Query: 219 EASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLY 278
++ W A+YL+
Sbjct: 150 --------------------------------------DGKRAVKPMREWQLSDNAAYLH 171
Query: 279 YCDNETVDGVEFNYIPD-SQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITV 337
YC NET+DG+ + PD + + +D SS LS DVS++GVI AGAQKNIGPAG+T+
Sbjct: 172 YCPNETIDGIAIDETPDFGPEVVVTADFSSTILSAPLDVSRYGVIYAGAQKNIGPAGLTL 231
Query: 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 397
VIVREDLL A P++ + + DN+S++NTPPTF ++ VF W+K QGG+A M +
Sbjct: 232 VIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHK 291
Query: 398 NSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFT 437
+ QK+ LLY IDNSD FY V RSRMNV F
Sbjct: 292 INQQKAELLYGVIDNSD-FYRNDVAQANRSRMNVP--FQL 328
Score = 257 bits (658), Expect = 4e-80
Identities = 82/174 (47%), Positives = 111/174 (63%), Gaps = 14/174 (8%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
+GVI AGAQKNIGPAG+T+VIVREDLL A P++ + + DN+S++NTPPTF ++
Sbjct: 213 YGVIYAGAQKNIGPAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYL 272
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGF------------- 555
VF W+K QGG+A M + + QK+ LLY IDNSD FY V
Sbjct: 273 SGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSD-FYRNDVAQANRSRMNVPFQLADN 331
Query: 556 PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609
LD++FL+E+ A + LKGHR+VGG+RASIYNA+ ++ L FM +F +H
Sbjct: 332 TLDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERRH 385
Score = 34.8 bits (81), Expect = 0.074
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 1 MSSNFLSRKFDVSK 14
SS LS DVS+
Sbjct: 199 FSSTILSAPLDVSR 212
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi
structural genomics consortium, SGC, amino-acid
biosynthesi aminotransferase; HET: PLP; 2.50A {Homo
sapiens}
Length = 377
Score = 457 bits (1177), Expect = e-158
Identities = 168/391 (42%), Positives = 217/391 (55%), Gaps = 93/391 (23%)
Query: 52 VINFGAG----------PAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDT 101
+ +G + LP VL E+++ LLDY+ GISV+EMSHRS+D+ KI N+T
Sbjct: 4 HHHHSSGVDLGTENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNT 63
Query: 102 QAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAA 161
+ +RELL VP+NYK++FLQGGG G F+AV +NLI
Sbjct: 64 ENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAG-------------------- 103
Query: 162 VAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEAS 221
ADYVVTG+WS KAA EA+K+G +N+V PK+ Y IPD STWN +P+AS
Sbjct: 104 ---------RCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPDAS 154
Query: 222 YLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCD 281
Y+YYC NETV G ++ IPD
Sbjct: 155 YVYYCANETVHG-----------------------VEFDFIPD----------------- 174
Query: 282 NETVDGVEFNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVR 341
+G LV DMSSNFLS+ DVSKFGVI AGAQKN+G AG+TVVIVR
Sbjct: 175 --------------VKGAVLVCDMSSNFLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVR 220
Query: 342 EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQ 401
+DLL +AL P+V +K+ A N+S+YNTPP F ++V+ V WIK GG A ME+ S
Sbjct: 221 DDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSI 280
Query: 402 KSVLLYQEIDNSDKFYECPVQAGCRSRMNVT 432
KS +Y+ IDNS FY CPV+ RS+MN+
Sbjct: 281 KSQTIYEIIDNSQGFYVCPVEPQNRSKMNIP 311
Score = 260 bits (668), Expect = 1e-81
Identities = 87/178 (48%), Positives = 113/178 (63%), Gaps = 17/178 (9%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
FGVI AGAQKN+G AG+TVVIVR+DLL +AL P+V +K+ A N+S+YNTPP F ++V
Sbjct: 198 FGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYV 257
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGF------------- 555
+ V WIK GG A ME+ S KS +Y+ IDNS FY CPV+
Sbjct: 258 MGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNA 317
Query: 556 ----PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609
L++ FL +A NM+ LKGHR VGGIRAS+YNA+T+++ L FMK+F H
Sbjct: 318 KGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEMH 375
Score = 35.2 bits (82), Expect = 0.061
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 1 MSSNFLSRKFDVSK 14
MSSNFLS+ DVSK
Sbjct: 184 MSSNFLSKPVDVSK 197
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid,
amino-acid biosynthesis, cytoplasm, pyridoxal phosphate;
HET: MES; 2.15A {Campylobacter jejuni}
Length = 361
Score = 451 bits (1163), Expect = e-156
Identities = 111/383 (28%), Positives = 174/383 (45%), Gaps = 91/383 (23%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
INF AGP+ LP E+LE+ ++ L DY+ G S+ME+SHR+ + +++ Q ++L +
Sbjct: 6 KINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYEL 65
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
++Y++LFLQGG + FA + MNL G
Sbjct: 66 NDDYEVLFLQGGASLQFAMIPMNL--------------------------------ALNG 93
Query: 172 KADYVVTGSWSKKAAAEAEKYG-KVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNET 230
+Y TG W+KKA EA+ G V V
Sbjct: 94 VCEYANTGVWTKKAIKEAQILGVNVKTV-------------------------------- 121
Query: 231 VDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290
S + S + IP A Y Y C N T+ G ++
Sbjct: 122 ----ASSEE-----------------SNFDHIPR---VEFSDNADYAYICSNNTIYGTQY 157
Query: 291 NYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYAL- 349
P + PL+ D SS+F SRK D S + G QKN G +G++ + +R+D+LE +
Sbjct: 158 QNYPKT-KTPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDMLERSKN 216
Query: 350 PITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409
P++ ++ +A+N S++NTPPTF +++ W+ QGGL K+ + + QK+ +LY+
Sbjct: 217 KQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYEC 276
Query: 410 IDNSDKFYECPVQAGCRSRMNVT 432
ID S+ FY+ RS MNV+
Sbjct: 277 IDLSNGFYKGHADKKDRSLMNVS 299
Score = 256 bits (657), Expect = 4e-80
Identities = 66/177 (37%), Positives = 107/177 (60%), Gaps = 15/177 (8%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYAL-PITPTVFHFKINADNNSVYNTPPTFVVH 507
+ G QKN G +G++ + +R+D+LE + P++ ++ +A+N S++NTPPTF ++
Sbjct: 185 IALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIY 244
Query: 508 VIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGF------------ 555
+ W+ QGGL K+ + + QK+ +LY+ ID S+ FY+
Sbjct: 245 MFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAK 304
Query: 556 --PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKHS 610
L+ LF+KEA+ MI LKGHR++GGIRASIYNA+ +D+ L +FMKEF+ K++
Sbjct: 305 NKDLEPLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGKYA 361
Score = 34.8 bits (81), Expect = 0.076
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 1 MSSNFLSRKFDVSK 14
SS+F SRK D S
Sbjct: 171 ASSDFFSRKVDFSN 184
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer,
structural genomics; HET: PLP; 1.50A {Mycobacterium
tuberculosis} PDB: 3vom_A*
Length = 398
Score = 339 bits (871), Expect = e-111
Identities = 72/396 (18%), Positives = 118/396 (29%), Gaps = 108/396 (27%)
Query: 54 NFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPN 113
FG+GP+K+ E L+ +T ++ SHR A + ++ L EL ++P+
Sbjct: 43 RFGSGPSKVRLEQLQ-------TLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPD 95
Query: 114 NYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKA 173
Y+++ GG T + A A LI ++
Sbjct: 96 GYEVILGNGGATAFWDAAAFGLID---------------------------------KRS 122
Query: 174 DYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 233
++ G +S K A+ K V I S S P+ DP + + NET G
Sbjct: 123 LHLTYGEFSAKFASAVSKNPFVGEPIIITSDPGSAPE---PQTDPSVDVIAWAHNETSTG 179
Query: 234 SWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNYI 293
V++ +
Sbjct: 180 --------------------------VAVAVR--------------------------RP 187
Query: 294 PDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIG-PAGITVVIVREDLLE------ 346
S +V D +S D+++ QKN G+ + I+ L
Sbjct: 188 EGSDDALVVIDATSGAGGLPVDIAETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIA 247
Query: 347 YALPITPTVFHFKINADN---NSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKS 403
P I +N N YNTP + ++ W+ GGL + + S
Sbjct: 248 ATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSS 307
Query: 404 VLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFS 439
LY G RS++ T F
Sbjct: 308 QRLYSWAQERPYTTPFVTDPGLRSQVVGT---IDFV 340
Score = 184 bits (469), Expect = 2e-52
Identities = 31/197 (15%), Positives = 57/197 (28%), Gaps = 33/197 (16%)
Query: 445 SAFF--------FGVIIAGAQKNIG-PAGITVVIVREDLLE------YALPITPTVFHFK 489
S QKN G+ + I+ L P
Sbjct: 201 SGAGGLPVDIAETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLP 260
Query: 490 INADN---NSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 546
I +N N YNTP + ++ W+ GGL + + S LY
Sbjct: 261 IAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYT 320
Query: 547 YECPVQAGF-------------PLDELFLKEAKAHNMIQLKGHRLVG--GIRASIYNAIT 591
G K +A+ ++ + +R +G +R +++ A+
Sbjct: 321 TPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVE 380
Query: 592 VDEAVILVKFMKEFRHK 608
D+ L + + +
Sbjct: 381 PDDVSALTECVDWVVER 397
Score = 31.1 bits (71), Expect = 1.2
Identities = 2/15 (13%), Positives = 6/15 (40%)
Query: 1 MSSNFLSRKFDVSKL 15
+S D+++
Sbjct: 199 ATSGAGGLPVDIAET 213
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii
atcc 33406}
Length = 362
Score = 326 bits (838), Expect = e-107
Identities = 69/397 (17%), Positives = 127/397 (31%), Gaps = 113/397 (28%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
I F GP++L V + + L + + +SHRS + ++ L+ LL +
Sbjct: 5 KIYFTPGPSELYPTVRQHMITALDEK------IGVISHRSKKFEEVYKTASDNLKTLLEL 58
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P+NY++LFL T ++ + N + +
Sbjct: 59 PSNYEVLFLA--------------------------------SATEIWERIIQNCVEK-- 84
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
K+ + V GS+SK+ A + G+
Sbjct: 85 KSFHCVNGSFSKRFYEFAGELGRE------------------------------------ 108
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
A E +GK + +A + NET GV
Sbjct: 109 -------AYKEEAAFGK-------------GFYPADITVPADAEIICLTHNETSSGVSMP 148
Query: 292 ------YIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIG-PAGITVVIVREDL 344
+ ++ + D S+ KFD +K + QK G PAG+ V I+ + +
Sbjct: 149 VEDINTFRDKNKDALIFVDAVSSLPYPKFDWTKIDSVFFSVQKCFGLPAGLGVWILNDRV 208
Query: 345 LEYALPITPTVFH---------FKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKM 395
+E + + A N TP + ++ +V + Q +
Sbjct: 209 IEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDML-QISADGI 267
Query: 396 EQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVT 432
+ + +K+ L+ I++S F A RS +
Sbjct: 268 RKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIV 304
Score = 173 bits (442), Expect = 4e-49
Identities = 30/180 (16%), Positives = 63/180 (35%), Gaps = 24/180 (13%)
Query: 449 FGVIIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFH---------FKINADNNSVY 498
+ QK G PAG+ V I+ + ++E + + A N
Sbjct: 182 IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTP 241
Query: 499 NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAG---- 554
TP + ++ +V + Q + + + +K+ L+ I++S F A
Sbjct: 242 ETPNAMNIFLLGKVTGDML-QISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSM 300
Query: 555 ----FP-----LDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEF 605
+ + E + G + IR + + A ++++ LV+ +KE
Sbjct: 301 TTIVANTTMLPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEK 360
Score = 29.1 bits (66), Expect = 4.8
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 1 MSSNFLSRKFDVSK 14
S+ KFD +K
Sbjct: 168 AVSSLPYPKFDWTK 181
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.8 bits (165), Expect = 7e-12
Identities = 95/549 (17%), Positives = 168/549 (30%), Gaps = 192/549 (34%)
Query: 3 SNFLSRKFDVSKLIAESTQFHSLYLG---NIIRNTYLDSRI---------HTTAMSSAAH 50
+ +L D+ L A+ Q + L +I+N Y+ +RI +A+ A
Sbjct: 93 NCYLEGN-DIHALAAKLLQENDTTLVKTKELIKN-YITARIMAKRPFDKKSNSALFRAV- 149
Query: 51 PVINFGAGPAKL---------PREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDT 101
G G A+L + EE+++ Y++ + V ++ SA+
Sbjct: 150 -----GEGNAQLVAIFGGQGNTDDYFEELRDL---YQTYHVLVGDLIKFSAE-------- 193
Query: 102 QAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLIS---SSMNVPNNYKILFLQGGGTGM 158
L EL+ + + +F QG +N++ + N P+ +L +
Sbjct: 194 --TLSELIRTTLDAEKVFTQG----------LNILEWLENPSNTPDKD---YL------L 232
Query: 159 FAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKY-----GKVNLVIPKVSKYVSIPDQST 213
++ LIG A YVVT E Y G ++ + ++ D +
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV--TAVAIAETD--S 288
Query: 214 WNRDPEAS-----YLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW 268
W + L++ G +A P S SI + S
Sbjct: 289 WESFFVSVRKAITVLFFI------GVRCYEAY-------------PNTSLPPSILEDSLE 329
Query: 269 NRDPEASYLYYCDNETVDGVE-----FN-YIPDSQ--GIPLVSDMSSNFLSRKFDVSKFG 320
N + S + N T + V+ N ++P + I LV N K
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV-----N--GAK----NL- 377
Query: 321 VIIAG-----------AQKNIGPAGIT----------VVIVREDLLEYALPIT-PTVFHF 358
+++G +K P+G+ + + LP+ P FH
Sbjct: 378 -VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS----NRF-LPVASP--FH- 428
Query: 359 KINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD---- 414
S P + + + +Q V Y D SD
Sbjct: 429 -------SHLLVP------ASDLINKDLVKNN--VSFNAKDIQIPV--YDTFDGSDLRVL 471
Query: 415 --KFYECPVQAGCRSRMN---VTDIFFTFSHVQTGSAFFFGVIIAGAQKNIGP------- 462
E V R + T F +H+ FG G +G
Sbjct: 472 SGSISERIVDCIIRLPVKWETTTQ--FKATHILD-----FG---PGGASGLGVLTHRNKD 521
Query: 463 -AGITVVIV 470
G+ V++
Sbjct: 522 GTGVRVIVA 530
Score = 43.1 bits (101), Expect = 3e-04
Identities = 56/375 (14%), Positives = 108/375 (28%), Gaps = 132/375 (35%)
Query: 246 YGKVNLVIPKVSKYVSIPDQSTWN----RD------PEASYLYYCDNETVDGVEFNYIPD 295
+G + V+ +P S + ++ PE + + D+E E
Sbjct: 13 HGSLEHVLL-------VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE------ 59
Query: 296 SQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTV 355
LV ++S + SK G + +L L T
Sbjct: 60 -----LVGKFLG-YVSSLVEPSKVGQ-------------------FDQVLNLCL----TE 90
Query: 356 FHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415
F N+ +H + AK+ Q + V + I N
Sbjct: 91 FENCYLEGND----------IHAL------------AAKLLQENDTTLVKTKELIKN--- 125
Query: 416 FYECPVQAGCRSRMNVTDIFFTFSHVQTGSAFFFGVIIAGAQKNIGPAGITVVIVREDLL 475
+ + A R ++ F V G+A + G Q G T E L
Sbjct: 126 YITARIMAK-RPFDKKSNSAL-FRAVGEGNAQLVAIF--GGQ------GNTDDYFEE-LR 174
Query: 476 EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVL 535
+ +Y T V +I+ L+++ + +L +
Sbjct: 175 D--------------------LYQTYHVLVGDLIKFSAE------TLSELIRTTLDAEKV 208
Query: 536 LYQEID------------NSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRL-VGGI 582
Q ++ + D P+ PL + + + AH ++ K G +
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPIS--CPL--IGVIQL-AHYVVTAKLLGFTPGEL 263
Query: 583 RASIYNAITVDEAVI 597
R+ + A + ++
Sbjct: 264 RSYLKGATGHSQGLV 278
Score = 38.1 bits (88), Expect = 0.010
Identities = 96/582 (16%), Positives = 171/582 (29%), Gaps = 191/582 (32%)
Query: 67 LEEVKETL-LDYESTGISVMEMSHRSADYT--KINNDTQAALRELLNVP-NNYKILFLQG 122
L E E D E T + E+ + Y + ++LN+ ++ +L+G
Sbjct: 41 LPEPTEGFAADDEPT--TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG 98
Query: 123 GGTGMFAAVAMNLISSSMNVPNNYKIL--FLQGGGTGMFAAVAMNLIGRTGKADYVVTGS 180
+ A A L + + +++ ++ A + R
Sbjct: 99 --NDIHALAAKLLQENDTTLVKTKELIKNYIT----------ARIMAKRP-------FDK 139
Query: 181 WSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRD--PEASYLY--YCDNETVDGSWS 236
S A A G L Q D E LY Y + G
Sbjct: 140 KSNSALFRAVGEGNAQL-------VAIFGGQGN-TDDYFEELRDLYQTY---HVLVGDLI 188
Query: 237 KKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEA----SYLYYCDNETVDGVEFNY 292
K +A + + L KV + + W +P YL
Sbjct: 189 KFSAETLSELIRTTLDAEKV--FTQGLNILEWLENPSNTPDKDYL-------------LS 233
Query: 293 IPDSQGIPL--VSDMSSNFLSRK---FDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEY 347
IP S PL V ++ ++ K F + + GA T + L+
Sbjct: 234 IPIS--CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA---------TGHS--QGLVT- 279
Query: 348 ALPI--TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKME---QNSLQK 402
A+ I T + F ++ I +F +I G+ E SL
Sbjct: 280 AVAIAETDSWESFFVSVRK-------------AITVLF-FI----GVRCYEAYPNTSLPP 321
Query: 403 SVLLYQEIDNSDKFYECPVQAGCRSRM-NVTDIFFTFSHVQTGSAFFFGVIIAGAQKNIG 461
S+L ++N++ G S M +++++ T VQ + ++
Sbjct: 322 SILE-DSLENNE---------GVPSPMLSISNL--TQEQVQD--------YVNKTNSHL- 360
Query: 462 PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVV----HVIQRVFAWIK 517
PAG V I S+ N VV + + ++
Sbjct: 361 PAGKQVEI--------------------------SLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 518 RQGGLAKMEQN----SLQKSVLLYQEIDNSDKFYECPVQAGF------PLDELFLKEAKA 567
+ + ++Q+ S +K S++F PV + F P +L K+
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKF-------SNRFL--PVASPFHSHLLVPASDLINKDLVK 445
Query: 568 HNMIQLKGHRL---V-------------GGIRASIYNAITVD 593
+N + + V G I I + I
Sbjct: 446 NN-VSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486
Score = 37.3 bits (86), Expect = 0.018
Identities = 32/193 (16%), Positives = 59/193 (30%), Gaps = 75/193 (38%)
Query: 455 GAQ-KNIG-------PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVV 506
G+Q + +G A + D+ A + F I + V N P +
Sbjct: 1625 GSQEQGMGMDLYKTSKA------AQ-DVWNRADNHFKDTYGFSIL---DIVINNPVNLTI 1674
Query: 507 HVIQRVFAWIK----RQGGLAKMEQNSL---QKSVLLYQEIDNSDKFYECPVQAGF--PL 557
H F K R+ A + + + K+ +++EI+ Y F
Sbjct: 1675 H-----FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT------FRSEK 1723
Query: 558 DELFLKE----A------------KAHNMIQLK----GHRLVGGIRASI--YNA------ 589
L + A K+ +I GH S+ Y A
Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH--------SLGEYAALASLAD 1775
Query: 590 -ITVDEAVILVKF 601
++++ V +V +
Sbjct: 1776 VMSIESLVEVVFY 1788
Score = 30.4 bits (68), Expect = 2.3
Identities = 53/349 (15%), Positives = 99/349 (28%), Gaps = 140/349 (40%)
Query: 325 GAQ-KNIG-------PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVV 376
G+Q + +G A + D+ A + F I + V N P +
Sbjct: 1625 GSQEQGMGMDLYKTSKA------AQ-DVWNRADNHFKDTYGFSIL---DIVINNPVNLTI 1674
Query: 377 HVIQRVFAWIK----RQGGLAKMEQNSL---QKSVLLYQEIDN--SDKFYECPVQAGCRS 427
H F K R+ A + + + K+ +++EI+ + + +
Sbjct: 1675 H-----FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE-----KG 1724
Query: 428 RMNVTDIFFTFSHVQ-----TGSAFF-----FGVI-----IAG----------AQKNIGP 462
++ T FT Q A F G+I AG +
Sbjct: 1725 LLSATQ--FT----QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL----- 1773
Query: 463 AGI-----TVVIVRE--DLLEYALPITPTVFHFKINADNNSVYNTPPTFVV-----HVIQ 510
A + V +V ++ A+P ++ N + P V +Q
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQVAVP------RDELGRSNYGMIAINPGRVAASFSQEALQ 1827
Query: 511 RVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNM 570
V + ++ G ++ EI N Y Q
Sbjct: 1828 YVVERVGKRTG-----------WLV---EIVN----YNVENQ------------------ 1851
Query: 571 IQLKGHRLVGG-IRASIYNAITVDEAVILVKFMKEFRHKHSRLSAQSQI 618
Q + G +RA +D ++ F+K + L +
Sbjct: 1852 -QY----VAAGDLRA-------LDTVTNVLNFIKLQKIDIIELQKSLSL 1888
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
structural genomics, JCSG; HET: MSE LLP; 1.70A
{Eubacterium rectale}
Length = 376
Score = 63.0 bits (154), Expect = 8e-11
Identities = 57/370 (15%), Positives = 101/370 (27%), Gaps = 115/370 (31%)
Query: 41 HTTAMSSAAHPV-INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINN 99
H + +NF GP EV + R+ +++
Sbjct: 8 HHHHHENLYFQGMLNFTVGPVMSSEEVRAI------------GAEQVPYFRTTEFSSTML 55
Query: 100 DTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMF 159
+ + + E P K +F+ TG M
Sbjct: 56 ENEKFMLEYAKAPEGSKAVFMTCSSTG------------------------------SME 85
Query: 160 AAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPE 219
A V N + K + GS+ + E +
Sbjct: 86 AVVM-NCFTKKDKVLVIDGGSFGHRFVQLCEIHE-------------------------- 118
Query: 220 ASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYY 279
+ KK E K+ +Y + + L
Sbjct: 119 ------IPYVALKLEHGKKLTKE------------KLYEYD----------NQNFTGLLV 150
Query: 280 CDNETVDGVEFNYIP------DSQGIPLVSD-MSSNFLSRKFDVSKFG--VIIAGAQKNI 330
+ET V + V D +S+ FL+ F++++ G V+I G+QK +
Sbjct: 151 NVDETSTAV-LYDTMMIGEFCKKNNMFFVCDCVSA-FLADPFNMNECGADVMITGSQKVL 208
Query: 331 -GPAGITVVIVREDLLEYALPITPTVFHF-----KINADNNSVYNTPPTFVVHVIQRVFA 384
P GI+V+++ +E +F N + TP ++ I
Sbjct: 209 ACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLK 268
Query: 385 WIKRQGGLAK 394
IK+ GG
Sbjct: 269 EIKKHGGADA 278
Score = 36.1 bits (84), Expect = 0.027
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 451 VIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTVFHF-----KINADNNSVYNTPPTF 504
V+I G+QK + P GI+V+++ +E +F N + TP
Sbjct: 199 VMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVG 258
Query: 505 VVHVIQRVFAWIKRQGGLAK 524
++ I IK+ GG
Sbjct: 259 ILLQINERLKEIKKHGGADA 278
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 59.9 bits (146), Expect = 8e-10
Identities = 56/355 (15%), Positives = 97/355 (27%), Gaps = 111/355 (31%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
GP R V E + + + + L L
Sbjct: 8 LTPGPLTTSRTVKEA------------MLFDSCTWDDDYNIGVVEQIRQQLTALATASEG 55
Query: 115 YKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKAD 174
Y + LQG G+ + A + + +G K
Sbjct: 56 YTSVLLQGSGSY------------------------------AVEAVLG-SALGPQDKVL 84
Query: 175 YVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGS 234
V G++ + A G + D
Sbjct: 85 IVSNGAYGARMVEMAGLMG--------------------------------IAHHAYDCG 112
Query: 235 WSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGV-----E 289
+ +A + + N DP S++ +ET G+ E
Sbjct: 113 EVARPDVQA------------IDAIL--------NADPTISHIAMVHSETTTGMLNPIDE 152
Query: 290 FNYIPDSQGIPLVSD-MSSNFLSRKFDVSKFGV--IIAGAQKNI-GPAGITVVIVREDLL 345
+ G + D MSS F D++ + +I+ A K I G G VI RE L
Sbjct: 153 VGALAHRYGKTYIVDAMSS-FGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKL 211
Query: 346 EYALPITPTVF-----HFKINADNNSVY-NTPPTFVVHVIQRVFAWIKRQGGLAK 394
+ ++ ++ DN+ + T PT V + + ++GG+A
Sbjct: 212 AACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAA 266
Score = 36.8 bits (86), Expect = 0.017
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 451 VIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTVF-----HFKINADNNSVY-NTPPT 503
+I+ A K I G G VI RE L + ++ ++ DN+ + T PT
Sbjct: 186 YLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPT 245
Query: 504 FVVHVIQRVFAWIKRQGGLAK 524
V + + ++GG+A
Sbjct: 246 HTVLAFAQALKELAKEGGVAA 266
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 2e-07
Identities = 64/440 (14%), Positives = 131/440 (29%), Gaps = 117/440 (26%)
Query: 4 NFLSRKFDVSKLIAESTQFHSLYLGNIIRNTYLDSRIH-----------TTAMSSAAHPV 52
S + ++ +L+ + L L ++ N +++ TT V
Sbjct: 226 RIHSIQAELRRLLKSKPYENCL-L--VLLNVQ-NAKAWNAFNLSCKILLTTRFKQ----V 277
Query: 53 INFGAGPAKLPREVLEEVKETLLDYESTGI--SVMEMSH----RSADYTKIN----NDTQ 102
+F A L+ TL E + ++ R N +
Sbjct: 278 TDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV--LTTNPRRLSIIA 334
Query: 103 AALRELLNVPNNYKILFLQGGGTGMFAAVAMN-LISSSMNV--PNNYKILFLQGGGTGMF 159
++R+ L +N+K + + +I SS+NV P Y+ +F + +F
Sbjct: 335 ESIRDGLATWDNWKHVNCD----------KLTTIIESSLNVLEPAEYRKMFDR---LSVF 381
Query: 160 ---AAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNR 216
A + L+ W ++ +V+ K+ KY S +
Sbjct: 382 PPSAHIPTILLSLI----------WFDVIKSDVM------VVVNKLHKY------SLVEK 419
Query: 217 DPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASY 276
P+ S + + K E + + V Y +IP + D Y
Sbjct: 420 QPKESTISIPS---IYLELKVKLENEYALHRSI------VDHY-NIPKTFDSD-DLIPPY 468
Query: 277 LYYCDNETVDGVEFNYIP----DSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGP 332
L D +++I + + ++ FL +F K I +
Sbjct: 469 L--------DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK---IRHDSTAWNAS 517
Query: 333 AGITVVIVREDLLEYALPITP----------TVFHFKINADNNSVYNTPPTFVVHVIQRV 382
I + + L Y I + F + N + + T ++
Sbjct: 518 GSILNTL--QQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN-LICSKYTDLLR----- 569
Query: 383 FAWIKRQGGLAKMEQNSLQK 402
A + + + +Q+
Sbjct: 570 IALMAEDEAIFEEAHKQVQR 589
Score = 38.3 bits (88), Expect = 0.007
Identities = 59/431 (13%), Positives = 120/431 (27%), Gaps = 147/431 (34%)
Query: 271 DPEASYLYYCDNET--------VDGVEFNYIPDSQGIPLVSDMSSNFLSRKFDVSK---- 318
D E Y + VD + + D L + + + K VS
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 319 FGVIIAGAQKNIGPAGITVVIVREDLLE--Y--------ALPITPTVFHFKINADNNSVY 368
F +++ Q+ + V E++L Y P++ + +Y
Sbjct: 68 FWTLLS-KQEEM------VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 369 NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNS---LQ------KSVLLYQEIDNSDKFYEC 419
N F + + R+ ++K + L ++ + K+ +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-------------- 166
Query: 420 PVQAGCRSRMNVTDIFFTFSHVQTGSAFFFGVI-IAGAQKNIGPAGITVVIVREDLLEYA 478
C S VQ F + + N+ E +LE
Sbjct: 167 -ALDVCLS-----------YKVQ--CKMDFKIFWL-----NLKNCNSP-----ETVLE-- 200
Query: 479 LPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQ 538
+ ++ N + S +++ +H IQ A ++R ++ + +L+
Sbjct: 201 -MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ---AELRRL-----LKSKPYENCLLVLL 251
Query: 539 EIDNS---DKF-YECPV--------------------------QAGFPLDE---LFLK-- 563
+ N+ + F C + DE L LK
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 564 ---------EAKAHN--MIQLKGHRLVGGI-RASIYNAITVDEAVILVKFMK-------- 603
E N + + + G+ + + D+ L ++
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK---LTTIIESSLNVLEP 368
Query: 604 -EFRHKHSRLS 613
E+R RLS
Sbjct: 369 AEYRKMFDRLS 379
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 44.5 bits (106), Expect = 7e-05
Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 25/136 (18%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
GP +P V + + + H + ++N Q L L +
Sbjct: 4 LTPGPTPIPERVQKALLRPMRG------------HLDPEVLRVNRAIQERLAALFDPGEG 51
Query: 115 YKILFLQGGGT-GMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKA 173
+ L G G+ GM A +A N+ +L L G F+ + G
Sbjct: 52 ALVAALAGSGSLGMEAGLA--------NLDRG-PVLVLV---NGAFSQRVAEMAALHGLD 99
Query: 174 DYVVTGSWSKKAAAEA 189
V+ + EA
Sbjct: 100 PEVLDFPPGEPVDPEA 115
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A
{Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Length = 384
Score = 42.6 bits (101), Expect = 2e-04
Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 22/135 (16%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
GP + +VL + S ++ + + LR ++ N
Sbjct: 6 LHVGPTTIKEDVLVA------------GLENNVGFTSKEFVEALAYSLKGLRYVMGASKN 53
Query: 115 YKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKAD 174
Y+ L + GGGT +V +L+ PN+ KIL + G+F + R
Sbjct: 54 YQPLIIPGGGTSAMESVT-SLLK-----PND-KILVVS---NGVFGDRWEQIFKRYPVNV 103
Query: 175 YVVTGSWSKKAAAEA 189
V+ S
Sbjct: 104 KVLRPSPGDYVKPGE 118
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 42.2 bits (100), Expect = 4e-04
Identities = 70/354 (19%), Positives = 108/354 (30%), Gaps = 110/354 (31%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
F AGP EVLE + V SHRS +Y K++ DT LRE L V
Sbjct: 24 FTAGPVACFPEVLEI------------MKVQMFSHRSKEYRKVHMDTVERLREFLEVEKG 71
Query: 115 YKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKAD 174
++L + GTG M A++ N + + GK
Sbjct: 72 -EVLLVPSSGTG------------------------------IMEASIR-NGVSKGGKVL 99
Query: 175 YVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGS 234
+ G++ K+ E G ++
Sbjct: 100 VTIIGAFGKRYKEVVESNG--------------------------------RKAVVLEYE 127
Query: 235 WSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGV-----E 289
K E + + ++P+ + NET GV E
Sbjct: 128 PGKAVKPE------------DLDDALR--------KNPDVEAVTITYNETSTGVLNPLPE 167
Query: 290 FNYIPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVREDLLE 346
+ + D S K+G V+ + +QK G P G+ + E LE
Sbjct: 168 LAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLE 227
Query: 347 YALPITPTVFHF------KINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAK 394
A + ++F K + S +TPP V I I++ GG K
Sbjct: 228 IAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEK 281
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Length = 379
Score = 42.0 bits (99), Expect = 4e-04
Identities = 45/329 (13%), Positives = 92/329 (27%), Gaps = 87/329 (26%)
Query: 56 GAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNY 115
A + L E S + ++H S + ++ ND + L+ + N
Sbjct: 3 TALRQDIDPNGLLEY--------SVVYTDRALNHMSKAFQEVMNDLLSNLKTVYNAEAA- 53
Query: 116 KILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADY 175
+ + G GT AVA ++ + L ++ G F+ ++ + A
Sbjct: 54 --VIIPGSGTYGMEAVA-RQLT-----IDE-DCLIIR---NGWFSYRWTQILEKGKFAKS 101
Query: 176 VVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSW 235
+ + EA K + V+K ++ +++ +Y ET G
Sbjct: 102 STVLTAERTEDTEAPKPFAPVDIETAVAK----------IKEDKSAIVYAPHVETSSGII 151
Query: 236 SKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNYIPD 295
+ I +S+ V + +D +
Sbjct: 152 LSEEY------------IKALSEAV---------HSVGGLLV-------IDCIA------ 177
Query: 296 SQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPITPT 354
S + L V+I+ QK +V++ ++
Sbjct: 178 SGCVWL-----------DMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESN 226
Query: 355 VFHF---------KINADNNSVY-NTPPT 373
F + + Y T PT
Sbjct: 227 CFSLDLKQWLTIMRAYENGGHAYHATMPT 255
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A
{Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 39.9 bits (94), Expect = 0.002
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 16/84 (19%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
AGP EVL + T+L + + ++ + + N
Sbjct: 13 LTAGPVNAYPEVLRGLGRTVLY------------DYDPAFQLLYEKVVDKAQKAMRLSN- 59
Query: 115 YKILFLQGGGT-GMFAAVAMNLIS 137
K + L G G+ AA A +LIS
Sbjct: 60 -KPVILHGEPVLGLEAAAA-SLIS 81
>1iug_A Putative aspartate aminotransferase; wild type,
pyridoxal-5'-phosphate form, riken structural
genomics/proteomics initiative, RSGI; HET: LLP; 2.20A
{Thermus thermophilus} SCOP: c.67.1.3
Length = 352
Score = 39.9 bits (94), Expect = 0.002
Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 23/144 (15%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
GP +L + LE ++ ++ HR+ ++ + LRE
Sbjct: 5 LTPGPVRLHPKALEA------------LARPQLHHRTEAAREVFLKARGLLREAFRTEG- 51
Query: 115 YKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKAD 174
++L L G GT A+ NL + P ++L G F+ + G
Sbjct: 52 -EVLILTGSGTLAMEALVKNLFA-----PGE-RVLVPV---YGKFSERFYEIALEAGLVV 101
Query: 175 YVVTGSWSKKAAAEAEKYGKVNLV 198
+ + E +
Sbjct: 102 ERLDYPYGDTPRPEDVAKEGYAGL 125
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein,
PLP-dependent transferase; HET: LLP; 1.75A {Aedes
aegypti} PDB: 2hui_A* 2huu_A*
Length = 393
Score = 39.6 bits (93), Expect = 0.003
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 15/84 (17%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
G GP+ P+ VL+ + G H + KI +D + +R L N
Sbjct: 23 MGPGPSNAPQRVLDA-----MSRPILG-------HLHPETLKIMDDIKEGVRYLFQTNNI 70
Query: 115 YKILFLQGGGT-GMFAAVAMNLIS 137
L G GM A + NL+
Sbjct: 71 A-TFCLSASGHGGMEATLC-NLLE 92
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: PLP; 1.70A {Nostoc SP}
SCOP: c.67.1.3
Length = 393
Score = 38.8 bits (91), Expect = 0.004
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 15/84 (17%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
G GP+ VL+ ++V + H + + ++ Q+ LR + N
Sbjct: 38 LGPGPSNAHPSVLQA------------MNVSPVGHLDPAFLALMDEIQSLLRYVWQTENP 85
Query: 115 YKILFLQGGGT-GMFAAVAMNLIS 137
I G GT M A +A N +
Sbjct: 86 LTIAV-SGTGTAAMEATIA-NAVE 107
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate
aminotransferase, pyridoxal-5-phosphate, SAD, glycolate
pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae}
SCOP: c.67.1.3
Length = 385
Score = 38.8 bits (91), Expect = 0.005
Identities = 30/139 (21%), Positives = 44/139 (31%), Gaps = 23/139 (16%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLN--VP 112
GP L V + LD S G H S ++ I R +
Sbjct: 9 LIPGPIILSGAVQKA-----LDVPSLG-------HTSPEFVSIFQRVLKNTRAVFKSAAA 56
Query: 113 NNYKILFLQGGGT-GMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
+ + L G GT G + N I S PN +L + TG F+ + + G
Sbjct: 57 SKSQPFVLAGSGTLGWDIFAS-NFILSKA--PNK-NVLVVS---TGTFSDRFADCLRSYG 109
Query: 172 -KADYVVTGSWSKKAAAEA 189
+ D V + E
Sbjct: 110 AQVDVVRPLKIGESVPLEL 128
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent
enzymes, purine metabolism transaminases,
aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Length = 416
Score = 38.4 bits (90), Expect = 0.005
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 15/84 (17%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
GP ++ VL + ++ +T I N+T LREL N
Sbjct: 15 MTPGPVEVDPRVLRVMSTPVVG------------QFDPAFTGIMNETMEMLRELFQTKNR 62
Query: 115 YKILFLQGGGT-GMFAAVAMNLIS 137
+ + G G+ A +A ++I
Sbjct: 63 W-AYPIDGTSRAGIEAVLA-SVIE 84
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway,
transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP:
c.67.1.3 PDB: 2ch2_A*
Length = 396
Score = 38.4 bits (90), Expect = 0.006
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 15/84 (17%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
G GP+ + VL + T+L + A+ + ++ + LR + N
Sbjct: 22 MGPGPSNCSKRVLTAMTNTVLS------------NFHAELFRTMDEVKDGLRYIFQT-EN 68
Query: 115 YKILFLQGGGT-GMFAAVAMNLIS 137
+ + G GM A ++ NL+
Sbjct: 69 RATMCVSGSAHAGMEAMLS-NLLE 91
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP;
2.58A {Klebsiella pneumoniae}
Length = 411
Score = 37.6 bits (88), Expect = 0.011
Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 15/84 (17%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
G GP VL + L+ T N+ A R + N
Sbjct: 17 MGPGPINADPRVLRAMSSQLIG------------QYDPAMTHYMNEVMALYRGVFRT-EN 63
Query: 115 YKILFLQGGGT-GMFAAVAMNLIS 137
+ + G G+ A + + I
Sbjct: 64 RWTMLVDGTSRAGIEAILV-SAIR 86
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative
aminotransferase, structural genomics, center for
structural genomics, JCSG; HET: PLP; 1.65A {Mus
musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Length = 393
Score = 36.1 bits (84), Expect = 0.031
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 15/84 (17%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
G GP+ L VL S+ + H + +I + + ++ + N
Sbjct: 27 LGPGPSNLAPRVLAA------------GSLRMIGHMQKEMLQIMEEIKQGIQYVFQTRNP 74
Query: 115 YKILFLQGGGT-GMFAAVAMNLIS 137
++ G G M A+ NL+
Sbjct: 75 LTLVV-SGSGHCAMETALF-NLLE 96
>3erp_A Putative oxidoreductase; funded by the national institute of
allergy and infectious D of NIH contract number
HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Length = 353
Score = 31.4 bits (72), Expect = 0.80
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Query: 163 AMNLIGRTGKADYVVTGSWS----KKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP 218
A++ + R GKA YV ++ ++A E G P + + P S + R
Sbjct: 173 ALDHLVRHGKALYVGISNYPADLARQAIDILEDLG-----TPCL---IHQPKYSLFERWV 224
Query: 219 EASYLYYCDNE 229
E L +
Sbjct: 225 EDGLLALLQEK 235
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone,
NADPH, cytoplasm, ION transport, ionic channel, NADP,
phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus}
SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A*
3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Length = 327
Score = 31.4 bits (72), Expect = 0.91
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 163 AMNLIGRTGKADYVVTGSWS----KKAAAEAEKYGKVNLVI 199
AM + G A Y T WS +A + A ++ + +
Sbjct: 138 AMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPIC 178
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating,
potassium channel, KV1.2, gating charges, no analysis,
ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Length = 367
Score = 31.5 bits (72), Expect = 0.94
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 163 AMNLIGRTGKADYVVTGSWS----KKAAAEAEKYGKVNLVI 199
AM + G A Y T WS +A + A ++ + +
Sbjct: 172 AMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPIC 212
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.2
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 15/40 (37%)
Query: 396 EQNSLQK---SVLLYQEIDNSDKFYECPVQAGCRSRMNVT 432
E+ +L+K S+ LY D+S P A + T
Sbjct: 18 EKQALKKLQASLKLYA--DDS-----APALA-----IKAT 45
Score = 28.4 bits (62), Expect = 3.9
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 13/34 (38%)
Query: 526 EQNSLQK---SVLLYQEIDNSDKFYECP---VQA 553
E+ +L+K S+ LY D+S P ++A
Sbjct: 18 EKQALKKLQASLKLYA--DDS-----APALAIKA 44
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, otholog; 2.15A {Mycobacterium avium subsp}
Length = 274
Score = 30.6 bits (70), Expect = 1.3
Identities = 6/36 (16%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 166 LIGRTGKA-DYVVTGSWSKKAAAEAEKYGKVNLVIP 200
++ R A + G + +A A + G ++ ++
Sbjct: 164 VLPR-SIALRMALMGKHERMSAQRAYELGLISEIVE 198
>3qav_A RHO-class glutathione S-transferase; cytosol; 2.10A {Laternula
elliptica} PDB: 3qaw_A*
Length = 243
Score = 30.3 bits (69), Expect = 1.5
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 66 VLEEVKETLLDYESTGISVMEMSHRSADYTKIN 98
VL+E K +DY+ IS + H+S + ++N
Sbjct: 44 VLQEKK---IDYDEKIISFSKKEHKSEEILELN 73
>1gnw_A Glutathione S-transferase; herbicide detoxification; HET: GTX;
2.20A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5
PDB: 1bx9_A*
Length = 211
Score = 29.5 bits (67), Expect = 2.5
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 66 VLEEVKETLLDYESTGISVMEMSHRSADYTKIN 98
L E LD+E + + + H+ + N
Sbjct: 20 ALHEKN---LDFELVHVELKDGEHKKEPFLSRN 49
>2fhq_A Putative general stress protein; alpha-beta structure, structural
genomics, PSI, protein STRU initiative; HET: MSE; 1.87A
{Bacteroides thetaiotaomicron} SCOP: b.45.1.1
Length = 141
Score = 28.7 bits (64), Expect = 2.7
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 11/69 (15%)
Query: 150 FLQGGGTGMFA---------AVAMNLIGRTGKAD-YVVTGSWSKKAAAEAEKYGKVNLVI 199
LQ A V M+ I G + ++ TG+ S K + K L
Sbjct: 16 LLQKCEVVTLASVNKEGYPRPVPMSKIAAEGISTIWMSTGADSLKTI-DFLSNPKAGLCF 74
Query: 200 PKVSKYVSI 208
+ V++
Sbjct: 75 QEKGDSVAL 83
>3ibh_A GST-II, saccharomyces cerevisiae GTT2; glutathione S-transferase,
transferase; HET: GSH; 2.10A {Saccharomyces cerevisiae}
PDB: 3erf_A* 3erg_A*
Length = 233
Score = 29.2 bits (66), Expect = 3.2
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 66 VLEEVKETLLDYESTGISVMEMSHRSADYTKIN 98
L E K L + I++ + H+ ++ N
Sbjct: 36 ALAE-KNMLSSVQFVRINLWKGEHKKPEFLAKN 67
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A
{Escherichia coli}
Length = 346
Score = 29.5 bits (67), Expect = 3.8
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 163 AMNLIGRTGKADYVVTGSWS----KKAAAEAEKYG 193
A+ ++GKA YV S+S +K ++
Sbjct: 152 ALAHAVQSGKALYVGISSYSPERTQKMVELLREWK 186
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 4.2
Identities = 5/27 (18%), Positives = 9/27 (33%), Gaps = 7/27 (25%)
Query: 163 AMNLIGRTGKADYVVTGSWSKKAAAEA 189
+ I +GKA + G +
Sbjct: 1116 GVETI-LSGKARICIVGG------YDD 1135
>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate
decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A
{Saccharomyces cerevisiae} PDB: 3gdl_A* 3gdk_A* 3gdt_A*
3gdr_A* 1dqw_A 1dqx_A*
Length = 267
Score = 28.9 bits (64), Expect = 4.4
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 291 NYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKN--IGPAGITVVIVREDLLEYA 348
+ +G+ +++++S + +K V IA + K+ IG + D
Sbjct: 139 EVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIA-QRDMGGRDEGYDW 197
Query: 349 LPITPTVFHFKINADNNSVYNTP 371
L +TP V Y T
Sbjct: 198 LIMTPGVGLDDKGDALGQQYRTV 220
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex,
glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55;
2.30A {Nonomuraea SP} PDB: 2wdw_A*
Length = 523
Score = 28.8 bits (64), Expect = 6.3
Identities = 30/210 (14%), Positives = 53/210 (25%), Gaps = 11/210 (5%)
Query: 42 TTAMSSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDT 101
M + + R +L+ E ++D + R T
Sbjct: 301 VPGMGESGFMMPIQVDATRPDARRLLDAHIEAVIDGVPPAEVPEPIEQRWLASTPGRGGR 360
Query: 102 QAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAA 161
A + K +L+ T ++ + L GG
Sbjct: 361 GPASK--------TKAGYLRKRLTDRQIQAVYENMTHMDGIDYGAVWLIGYGGKVNTVDP 412
Query: 162 VAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEAS 221
A L R W+ EA+ V + V N + +
Sbjct: 413 AATALPQRDAILKVNYITGWAN-PGNEAKHLTWVRKLYADVYAETG--GVPVPNDVSDGA 469
Query: 222 YLYYCDNETVDGSWSKKAAAEAEKYGKVNL 251
Y+ Y D++ D + + Y K N
Sbjct: 470 YINYPDSDLADPGLNTSGVPWHDLYYKGNH 499
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic
acid cycle, oxidoreductase, protein phosphorylation,
NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP:
c.77.1.1
Length = 423
Score = 28.5 bits (64), Expect = 7.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 139 SMNVPNNYKILFLQGGGTG 157
+NVPNN I F++G GTG
Sbjct: 13 VLNVPNNPIIPFIEGDGTG 31
Score = 28.1 bits (63), Expect = 9.2
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 109 LNVPNNYKILFLQGGGTG 126
LNVPNN I F++G GTG
Sbjct: 14 LNVPNNPIIPFIEGDGTG 31
>1aw9_A Glutathione S-transferase III; herbicide detoxification; 2.20A
{Zea mays} SCOP: a.45.1.1 c.47.1.5
Length = 216
Score = 28.0 bits (63), Expect = 8.0
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 14/60 (23%)
Query: 39 RIHTTAMSSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKIN 98
+++ +S V VL E LD+E + + +H+ D+ +N
Sbjct: 4 KLYGMPLSPNVVRV-----------ATVLNEKG---LDFEIVPVDLTTGAHKQPDFLALN 49
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein,
isocitrate/isopropylmalate dehydrogenase-like fold,
oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus
thiooxidans}
Length = 429
Score = 28.1 bits (63), Expect = 8.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 139 SMNVPNNYKILFLQGGGTG 157
+ VP+ I F++G G G
Sbjct: 20 VLQVPDQPIIPFIEGDGIG 38
Score = 28.1 bits (63), Expect = 9.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 109 LNVPNNYKILFLQGGGTG 126
L VP+ I F++G G G
Sbjct: 21 LQVPDQPIIPFIEGDGIG 38
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase,
PSI-2, protein structure initiative; 1.50A {Streptomyces
avermitilis}
Length = 289
Score = 27.9 bits (63), Expect = 8.9
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 166 LIGRTGKA-DYVVTGSWSKKAAAEAEKYGKVNLVIP 200
L+GR G+A + V+T S A AE+YG VN +P
Sbjct: 159 LLGR-GRALEAVLTSSDFD--ADLAERYGWVNRAVP 191
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural
genomics center for infectious ssgcid, glyoxylate
bypass, manganese; 1.65A {Burkholderia pseudomallei}
PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A
1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A*
1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ...
Length = 427
Score = 28.0 bits (63), Expect = 9.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 139 SMNVPNNYKILFLQGGGTG 157
S+NV + I +++G GTG
Sbjct: 30 SLNVSDQPIIPYIEGDGTG 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.390
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,632,494
Number of extensions: 607160
Number of successful extensions: 1922
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1850
Number of HSP's successfully gapped: 97
Length of query: 621
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 522
Effective length of database: 3,937,614
Effective search space: 2055434508
Effective search space used: 2055434508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)