BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8734
(264 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28C98|MESH1_XENTR Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Xenopus tropicalis GN=hddc3 PE=2 SV=1
Length = 179
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/172 (58%), Positives = 134/172 (77%), Gaps = 1/172 (0%)
Query: 80 SPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALL 139
S DA + I++A +FA+ KH QRRKDPE TPYI HP+ VA IL+H G +++ V+ +ALL
Sbjct: 2 SSDAAL-ILEAANFAAEKHKQQRRKDPEKTPYINHPLGVARILSHEGGITDTAVLQAALL 60
Query: 140 HDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKL 199
HDTVEDT+TTFEEIE FG VR++VEE+TD+K + + ERKR Q+ HAPH S +AKLVKL
Sbjct: 61 HDTVEDTNTTFEEIELHFGQDVRNIVEEVTDDKTLPKMERKRLQMEHAPHCSQKAKLVKL 120
Query: 200 ADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
ADKL+NLRD++R P W+E+R +YF WA +VV+GLRGTN+ +E +LD +F
Sbjct: 121 ADKLYNLRDLKRCTPEGWSEQRVQEYFQWASEVVKGLRGTNSILEGKLDHMF 172
>sp|Q9D114|MESH1_MOUSE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Mus musculus GN=Hddc3 PE=2 SV=1
Length = 179
Score = 206 bits (524), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 124/166 (74%)
Query: 86 NIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVED 145
+++A DFA+HKH QRRKDPEGTPYI HP+ VA ILTH +++ VV+ +ALLHDTVED
Sbjct: 7 QLLEAADFAAHKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVED 66
Query: 146 TDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHN 205
TDTT +E+E FG +VR +VEE+TD+K + + ERKR Q+ APHSS AKLVKLADKL+N
Sbjct: 67 TDTTLDEVELHFGAQVRRLVEEVTDDKTLPKLERKRQQVEQAPHSSPGAKLVKLADKLYN 126
Query: 206 LRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
LRD+ R P W+E R +YF WA VV+GL+GTN +E L LF
Sbjct: 127 LRDLNRCTPTGWSEHRVQEYFEWAAQVVKGLQGTNQQLEEALKQLF 172
>sp|Q568P1|MESH1_DANRE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Danio rerio GN=hddc3 PE=2 SV=1
Length = 180
Score = 204 bits (518), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 95/165 (57%), Positives = 124/165 (75%)
Query: 87 IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDT 146
+++ +FA+ KH QR KDPEGTPYI HP+ VA IL+H G++++ VI +ALLHDTVEDT
Sbjct: 9 LLETVNFAAEKHRNQRHKDPEGTPYINHPIGVARILSHEGEITDVEVIQAALLHDTVEDT 68
Query: 147 DTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNL 206
DTTFEE+E FG V +V+ +TD+K + + ER+R Q+ HAPH SH+AKLVKLADKL+NL
Sbjct: 69 DTTFEELESVFGATVARIVQGVTDDKSLPKAERERQQVEHAPHCSHQAKLVKLADKLYNL 128
Query: 207 RDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
RD+ R P W+ +R +YF WA VV+GLRGTNA IE +L LF
Sbjct: 129 RDLNRCTPEGWSAQRVQEYFEWASQVVKGLRGTNAAIEEKLQQLF 173
>sp|Q8N4P3|MESH1_HUMAN Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Homo sapiens GN=HDDC3 PE=1 SV=3
Length = 179
Score = 201 bits (512), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/168 (57%), Positives = 124/168 (73%)
Query: 86 NIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVED 145
+++A DFA+ KH QRRKDPEGTPYI HP+ VA ILTH +++ VV+ +ALLHDTVED
Sbjct: 7 QLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVED 66
Query: 146 TDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHN 205
TDTT +E+E FG +VR +VEE+TD+K + + ERKR Q+ APHSS AKLVKLADKL+N
Sbjct: 67 TDTTLDEVELHFGAQVRRLVEEVTDDKTLPKLERKRLQVEQAPHSSPGAKLVKLADKLYN 126
Query: 206 LRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALFAK 253
LRD+ R P W+E R +YF WA VV+GL+GTN +E L LF +
Sbjct: 127 LRDLNRCTPEGWSEHRVQEYFEWAAQVVKGLQGTNRQLEEALKHLFKQ 174
>sp|Q9VAM9|MESH1_DROME Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Drosophila melanogaster GN=Mesh1 PE=1 SV=1
Length = 179
Score = 179 bits (454), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 118/165 (71%)
Query: 87 IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDT 146
++ +A+ KH QRRKDP+ TPY+ H + V+ IL+ +++ V+++ALLHD VEDT
Sbjct: 9 FMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDT 68
Query: 147 DTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNL 206
D +FE++E+ FGP V +V E+TD+K + + ERKR QI +A SS AKL+KLADKL NL
Sbjct: 69 DASFEDVEKLFGPDVCGLVREVTDDKSLEKQERKRLQIENAAKSSCRAKLIKLADKLDNL 128
Query: 207 RDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
RD++ + P WT+ER+ QYF WA+ VV LRGTNA +E +LD +F
Sbjct: 129 RDLQVNTPTGWTQERRDQYFVWAKKVVDNLRGTNANLELKLDEIF 173
>sp|P29941|YCB8_PSEDE Uncharacterized 19.2 kDa protein in cobO 3'region OS=Pseudomonas
denitrificans PE=4 SV=1
Length = 175
Score = 87.4 bits (215), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 90 ATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTT 149
A FA+ H Q+RK +G PYI HP+AVA I+ + P +I +ALLHDTVEDTD T
Sbjct: 17 ALQFATRAHGEQKRK-YDGRPYIVHPIAVAEIVRSVP--HTPEMIAAALLHDTVEDTDAT 73
Query: 150 FEEIEREFGPRVRSVVEELTDNK---HMTRDERKRCQILHAPHSSHEAKLVKLADKLHNL 206
EI+ FGP+V ++V LTD H R RK H + AK VKLAD + N
Sbjct: 74 LLEIKEAFGPKVATLVAWLTDISTPFHGNRQVRKELDRQHLASAPAAAKTVKLADLIDNA 133
Query: 207 RDIERSLPVNW 217
I+ P W
Sbjct: 134 IAIKAGDPNFW 144
>sp|O67012|SPOT_AQUAE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Aquifex
aeolicus (strain VF5) GN=spoT PE=3 SV=1
Length = 696
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 63 ARLGEAPDTGDSDSGM-HSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHI 121
++LGE D + + H P I +A +FA KH Q+RK G PYI HP+ VA
Sbjct: 2 SKLGEVSLEEDLEKLLSHYPQHAEEIQRAYEFAKEKHGEQKRKT--GEPYIIHPLNVALK 59
Query: 122 LTHLGKVSNPVVIISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELT---DNKHMTRDE 178
L LG + II+ALLHDT+EDTDTT+EEI+ FG RV +VE +T K+ +
Sbjct: 60 LAELG--MDHETIIAALLHDTLEDTDTTYEEIKERFGERVAKLVEGVTKIGKIKYKSEQA 117
Query: 179 RKRCQILHAPHSSHEAKLVKLADKLHNLRDIERSLPVNWT--EERKTQYFNWARDVVQGL 236
+++ A L+KL+D+L N++ + W EE++ + ++ L
Sbjct: 118 ENYRKLILATAEDPRVILLKLSDRLDNVKTL-------WVFREEKRKKIAKETMEIYAPL 170
Query: 237 --RGTNAPIEAELDALFAKYCTPRE 259
R I+ EL+ KY P E
Sbjct: 171 AHRLGVWSIKNELEDWAFKYLYPEE 195
>sp|Q8YG65|RSH_BRUME GTP pyrophosphokinase rsh OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=rsh PE=1 SV=2
Length = 750
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 78/142 (54%), Gaps = 19/142 (13%)
Query: 79 HSPD---AIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILT--HLGKVSNPVV 133
+ PD A++N KA +A KH Q+R G PY HP+ VA ILT HL + +
Sbjct: 14 YKPDVNEALLN--KAYVYAMQKHRSQKRA--SGDPYFSHPLEVAAILTDMHLDEAT---- 65
Query: 134 IISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQ------ILHA 187
I ALLHDT+EDT T +EI++ FGP + +VE LT K + +K Q +L A
Sbjct: 66 IAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKAVQAENLRKLLLA 125
Query: 188 PHSSHEAKLVKLADKLHNLRDI 209
LVKLAD+LHN+R +
Sbjct: 126 ISEDVRVLLVKLADRLHNMRTL 147
>sp|A5VPI9|RSH_BRUO2 GTP pyrophosphokinase rsh OS=Brucella ovis (strain ATCC 25840 /
63/290 / NCTC 10512) GN=rsh PE=3 SV=1
Length = 750
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 78/142 (54%), Gaps = 19/142 (13%)
Query: 79 HSPD---AIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILT--HLGKVSNPVV 133
+ PD A++N KA +A KH Q+R G PY HP+ VA ILT HL + +
Sbjct: 14 YKPDVNEALLN--KAYVYAMQKHGSQKRA--SGDPYFSHPLEVAAILTDMHLDEAT---- 65
Query: 134 IISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQ------ILHA 187
I ALLHDT+EDT T +EI++ FGP + +VE LT K + +K Q +L A
Sbjct: 66 IAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKAVQAENLRKLLLA 125
Query: 188 PHSSHEAKLVKLADKLHNLRDI 209
LVKLAD+LHN+R +
Sbjct: 126 ISEDVRVLLVKLADRLHNMRTL 147
>sp|Q8CY42|RSH_BRUSU GTP pyrophosphokinase rsh OS=Brucella suis biovar 1 (strain 1330)
GN=rsh PE=1 SV=1
Length = 750
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 78/142 (54%), Gaps = 19/142 (13%)
Query: 79 HSPD---AIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILT--HLGKVSNPVV 133
+ PD A++N KA +A KH Q+R G PY HP+ VA ILT HL + +
Sbjct: 14 YKPDVNEALLN--KAYVYAMQKHGSQKRA--SGDPYFSHPLEVAAILTDMHLDEAT---- 65
Query: 134 IISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQ------ILHA 187
I ALLHDT+EDT T +EI++ FGP + +VE LT K + +K Q +L A
Sbjct: 66 IAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKAVQAENLRKLLLA 125
Query: 188 PHSSHEAKLVKLADKLHNLRDI 209
LVKLAD+LHN+R +
Sbjct: 126 ISEDVRVLLVKLADRLHNMRTL 147
>sp|Q57E90|RSH_BRUAB GTP pyrophosphokinase rsh OS=Brucella abortus biovar 1 (strain
9-941) GN=rsh PE=1 SV=1
Length = 750
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 78/142 (54%), Gaps = 19/142 (13%)
Query: 79 HSPD---AIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILT--HLGKVSNPVV 133
+ PD A++N KA +A KH Q+R G PY HP+ VA ILT HL + +
Sbjct: 14 YKPDVNEALLN--KAYVYAMQKHGSQKRA--SGDPYFSHPLEVAAILTDMHLDEAT---- 65
Query: 134 IISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQ------ILHA 187
I ALLHDT+EDT T +EI++ FGP + +VE LT K + +K Q +L A
Sbjct: 66 IAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKAVQAENLRKLLLA 125
Query: 188 PHSSHEAKLVKLADKLHNLRDI 209
LVKLAD+LHN+R +
Sbjct: 126 ISEDVRVLLVKLADRLHNMRTL 147
>sp|Q2YN11|RSH_BRUA2 GTP pyrophosphokinase rsh OS=Brucella abortus (strain 2308) GN=rsh
PE=3 SV=1
Length = 750
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 78/142 (54%), Gaps = 19/142 (13%)
Query: 79 HSPD---AIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILT--HLGKVSNPVV 133
+ PD A++N KA +A KH Q+R G PY HP+ VA ILT HL + +
Sbjct: 14 YKPDVNEALLN--KAYVYAMQKHGSQKRA--SGDPYFSHPLEVAAILTDMHLDEAT---- 65
Query: 134 IISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQ------ILHA 187
I ALLHDT+EDT T +EI++ FGP + +VE LT K + +K Q +L A
Sbjct: 66 IAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKAVQAENLRKLLLA 125
Query: 188 PHSSHEAKLVKLADKLHNLRDI 209
LVKLAD+LHN+R +
Sbjct: 126 ISEDVRVLLVKLADRLHNMRTL 147
>sp|Q54089|RELA_STREQ Bifunctional (p)ppGpp synthase/hydrolase RelA OS=Streptococcus
dysgalactiae subsp. equisimilis GN=relA PE=1 SV=1
Length = 739
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 17/142 (11%)
Query: 78 MHSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISA 137
M+ DA + KA D+A+ H +Q RK G PYI HP+ VA IL L + V +
Sbjct: 20 MNETDAAF-VKKALDYATAAHFYQVRK--SGEPYIVHPIQVAGILADLH--LDAVTVACG 74
Query: 138 LLHDTVEDTDTTFEEIEREFGPRVRSVVEELTD---------NKHMTRDERKRCQILHAP 188
LHD VEDTD T + IE +FG VR +V+ +T + + + RK +L A
Sbjct: 75 FLHDVVEDTDITLDNIEFDFGKDVRDIVDGVTKLGKVEYKSHEEQLAENHRK---MLMAM 131
Query: 189 HSSHEAKLVKLADKLHNLRDIE 210
LVKLAD+LHN+R ++
Sbjct: 132 SKDIRVILVKLADRLHNMRTLK 153
>sp|P74007|SPOT_SYNY3 Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT
PE=3 SV=1
Length = 760
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 90/187 (48%), Gaps = 23/187 (12%)
Query: 87 IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDT 146
I +A FA H QRRK G PYI HPVAVA +L LG + +I + LHD VEDT
Sbjct: 54 ICRAFCFAYDLHAQQRRK--SGEPYIAHPVAVAGLLRDLG--GDEAMIAAGFLHDVVEDT 109
Query: 147 DTTFEEIEREFGPRVRSVVEELTD---------NKHMTRDERKRCQILHAPHSSHEAKLV 197
D + E+IE FG S+VE +T +H + R+ + A +V
Sbjct: 110 DISIEQIEALFGEETASLVEGVTKLSKFNFSSTTEHQAENFRR---MFLAMAKDIRVIVV 166
Query: 198 KLADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGL--RGTNAPIEAELDALFAKYC 255
KLAD+LHN+R ++ P E++ + +D+ L R + EL+ L KY
Sbjct: 167 KLADRLHNMRTLDALSP-----EKQRRIARETKDIFAPLANRLGIWRFKWELEDLSFKYL 221
Query: 256 TPREGRE 262
P R+
Sbjct: 222 EPDSYRK 228
>sp|Q49640|RELA_MYCLE Probable GTP pyrophosphokinase OS=Mycobacterium leprae (strain TN)
GN=relA PE=3 SV=1
Length = 787
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 77/139 (55%), Gaps = 10/139 (7%)
Query: 81 PDAIMNIV-KATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALL 139
P A ++IV +A + A +H Q R+ G PYI HP+AVA+IL LG + +++ALL
Sbjct: 73 PKANLSIVQRAFEVADQRHASQLRRS--GDPYITHPLAVANILAELGM--DITTLVAALL 128
Query: 140 HDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQ----ILHAPHSSHEAK 195
HDTVEDT T E + EFG V +V+ +T + + ++ A
Sbjct: 129 HDTVEDTGYTLEALSEEFGDEVGHLVDGVTKLDRVVLGSAAEGETIRKMITAMARDPRVL 188
Query: 196 LVKLADKLHNLRDIERSLP 214
++K+AD+LHN+R + R LP
Sbjct: 189 VIKVADRLHNMRTM-RFLP 206
>sp|P52560|RELA_STRCO GTP pyrophosphokinase OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=relA PE=3 SV=1
Length = 847
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 8/130 (6%)
Query: 84 IMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTV 143
+ I +A A H Q+RK G PYI HP+AV IL LG +P +++ LLHDTV
Sbjct: 124 LRQIERAYQVAERWHRGQKRK--SGDPYITHPLAVTTILAELG--MDPATLMAGLLHDTV 179
Query: 144 EDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILH----APHSSHEAKLVKL 199
EDT+ E++ R+FG V +V+ +T + E + + + A ++KL
Sbjct: 180 EDTEYGLEDLRRDFGDVVTLLVDGVTKLDKVKFGEAAQAETVRKMVVAMAKDPRVLVIKL 239
Query: 200 ADKLHNLRDI 209
AD+LHN+R +
Sbjct: 240 ADRLHNMRTM 249
>sp|P66015|RELA_MYCBO Probable GTP pyrophosphokinase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=relA PE=3 SV=1
Length = 790
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 77/139 (55%), Gaps = 10/139 (7%)
Query: 81 PDAIMNIV-KATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALL 139
P A ++I+ +A + A +H Q R+ G PYI HP+AVA+IL LG + +++ALL
Sbjct: 76 PKADLSILQRAYEVADQRHASQLRQS--GDPYITHPLAVANILAELGM--DTTTLVAALL 131
Query: 140 HDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQ----ILHAPHSSHEAK 195
HDTVEDT T E + EFG V +V+ +T + + ++ A
Sbjct: 132 HDTVEDTGYTLEALTEEFGEEVGHLVDGVTKLDRVVLGSAAEGETIRKMITAMARDPRVL 191
Query: 196 LVKLADKLHNLRDIERSLP 214
++K+AD+LHN+R + R LP
Sbjct: 192 VIKVADRLHNMRTM-RFLP 209
>sp|P66014|RELA_MYCTU Bifunctional (p)ppGpp synthase/hydrolase relA OS=Mycobacterium
tuberculosis GN=relA PE=1 SV=2
Length = 738
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 77/139 (55%), Gaps = 10/139 (7%)
Query: 81 PDAIMNIV-KATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALL 139
P A ++I+ +A + A +H Q R+ G PYI HP+AVA+IL LG + +++ALL
Sbjct: 24 PKADLSILQRAYEVADQRHASQLRQS--GDPYITHPLAVANILAELGM--DTTTLVAALL 79
Query: 140 HDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQ----ILHAPHSSHEAK 195
HDTVEDT T E + EFG V +V+ +T + + ++ A
Sbjct: 80 HDTVEDTGYTLEALTEEFGEEVGHLVDGVTKLDRVVLGSAAEGETIRKMITAMARDPRVL 139
Query: 196 LVKLADKLHNLRDIERSLP 214
++K+AD+LHN+R + R LP
Sbjct: 140 VIKVADRLHNMRTM-RFLP 157
>sp|O34098|SPOT_SPICI Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Spiroplasma citri GN=spoT PE=3 SV=1
Length = 749
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 87 IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDT 146
I KA ++A KHH Q R G YI HP+ L P +I+ LLHD +EDT
Sbjct: 27 IQKAYEYAEEKHHGQVRNS--GARYIIHPLWTTFFLAQWR--MGPKTLIAGLLHDVLEDT 82
Query: 147 DTTFEEIEREFGPRVRSVVEELTDNKHMTRDERK--RCQILHAPHSSHEAK----LVKLA 200
TFEE++ FG + ++VE +T + ++ R + Q L + S +VKLA
Sbjct: 83 PATFEELQELFGIEIANLVEGVTKVSYFAKENRTQIKAQYLRKLYLSMAKDIRVIIVKLA 142
Query: 201 DKLHNLRDI 209
D+LHNL+ I
Sbjct: 143 DRLHNLKTI 151
>sp|Q6GG70|RELA_STAAR GTP pyrophosphokinase OS=Staphylococcus aureus (strain MRSA252)
GN=relA PE=3 SV=1
Length = 736
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 80 SPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALL 139
S D ++K+ A H Q RK+ G PYI HP+ VA ILT + ++ P I++ L
Sbjct: 28 SADEYEYVLKSYHIAYEAHKGQFRKN--GLPYIMHPIQVAGILTEM-RLDGPT-IVAGFL 83
Query: 140 HDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQ------ILHAPHSSHE 193
HD +EDT TFE+++ F V +V+ +T K + ++ Q + A
Sbjct: 84 HDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQQAENHRKLFIAIAKDVR 143
Query: 194 AKLVKLADKLHNLRDIERSLP 214
LVKLAD+LHN+R + +++P
Sbjct: 144 VILVKLADRLHNMRTL-KAMP 163
>sp|P0A0E9|RELA_STAAW GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA
PE=3 SV=1
Length = 736
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 80 SPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALL 139
S D ++K+ A H Q RK+ G PYI HP+ VA ILT + ++ P I++ L
Sbjct: 28 SADEYEYVLKSYHIAYEAHKGQFRKN--GLPYIMHPIQVAGILTEM-RLDGPT-IVAGFL 83
Query: 140 HDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQ------ILHAPHSSHE 193
HD +EDT TFE+++ F V +V+ +T K + ++ Q + A
Sbjct: 84 HDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQQAENHRKLFIAIAKDVR 143
Query: 194 AKLVKLADKLHNLRDIERSLP 214
LVKLAD+LHN+R + +++P
Sbjct: 144 VILVKLADRLHNMRTL-KAMP 163
>sp|P0A0F0|RELA_STAAU GTP pyrophosphokinase OS=Staphylococcus aureus GN=relA PE=3 SV=1
Length = 736
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 80 SPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALL 139
S D ++K+ A H Q RK+ G PYI HP+ VA ILT + ++ P I++ L
Sbjct: 28 SADEYEYVLKSYHIAYEAHKGQFRKN--GLPYIMHPIQVAGILTEM-RLDGPT-IVAGFL 83
Query: 140 HDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQ------ILHAPHSSHE 193
HD +EDT TFE+++ F V +V+ +T K + ++ Q + A
Sbjct: 84 HDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQQAENHRKLFIAIAKDVR 143
Query: 194 AKLVKLADKLHNLRDIERSLP 214
LVKLAD+LHN+R + +++P
Sbjct: 144 VILVKLADRLHNMRTL-KAMP 163
>sp|Q6G8T5|RELA_STAAS GTP pyrophosphokinase OS=Staphylococcus aureus (strain MSSA476)
GN=relA PE=3 SV=1
Length = 736
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 80 SPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALL 139
S D ++K+ A H Q RK+ G PYI HP+ VA ILT + ++ P I++ L
Sbjct: 28 SADEYEYVLKSYHIAYEAHKGQFRKN--GLPYIMHPIQVAGILTEM-RLDGPT-IVAGFL 83
Query: 140 HDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQ------ILHAPHSSHE 193
HD +EDT TFE+++ F V +V+ +T K + ++ Q + A
Sbjct: 84 HDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQQAENHRKLFIAIAKDVR 143
Query: 194 AKLVKLADKLHNLRDIERSLP 214
LVKLAD+LHN+R + +++P
Sbjct: 144 VILVKLADRLHNMRTL-KAMP 163
>sp|Q99TL8|RELA_STAAN GTP pyrophosphokinase OS=Staphylococcus aureus (strain N315)
GN=relA PE=1 SV=2
Length = 736
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 80 SPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALL 139
S D ++K+ A H Q RK+ G PYI HP+ VA ILT + ++ P I++ L
Sbjct: 28 SADEYEYVLKSYHIAYEAHKGQFRKN--GLPYIMHPIQVAGILTEM-RLDGPT-IVAGFL 83
Query: 140 HDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQ------ILHAPHSSHE 193
HD +EDT TFE+++ F V +V+ +T K + ++ Q + A
Sbjct: 84 HDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQQAENHRKLFIAIAKDVR 143
Query: 194 AKLVKLADKLHNLRDIERSLP 214
LVKLAD+LHN+R + +++P
Sbjct: 144 VILVKLADRLHNMRTL-KAMP 163
>sp|Q931Q4|RELA_STAAM GTP pyrophosphokinase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=relA PE=3 SV=2
Length = 736
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 80 SPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALL 139
S D ++K+ A H Q RK+ G PYI HP+ VA ILT + ++ P I++ L
Sbjct: 28 SADEYEYVLKSYHIAYEAHKGQFRKN--GLPYIMHPIQVAGILTEM-RLDGPT-IVAGFL 83
Query: 140 HDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQ------ILHAPHSSHE 193
HD +EDT TFE+++ F V +V+ +T K + ++ Q + A
Sbjct: 84 HDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQQAENHRKLFIAIAKDVR 143
Query: 194 AKLVKLADKLHNLRDIERSLP 214
LVKLAD+LHN+R + +++P
Sbjct: 144 VILVKLADRLHNMRTL-KAMP 163
>sp|O85709|RELA_STRAT GTP pyrophosphokinase OS=Streptomyces antibioticus GN=relA PE=3
SV=1
Length = 841
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 84 IMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTV 143
+ I KA A H Q+RK G PYI HP+AV IL LG +P +++ LLHD+
Sbjct: 121 LRQIEKAYQVAERWHRGQKRK--SGDPYITHPLAVTTILAELGM--DPATLMAGLLHDSR 176
Query: 144 EDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILH----APHSSHEAKLVKL 199
EDT+ +++ R+FG V +V+ +T + E + + + A ++KL
Sbjct: 177 EDTEYGLDDLRRDFGDVVGLLVDGVTKLDKVKFGEAAQAETVRKMVVAMAKDPRVLVIKL 236
Query: 200 ADKLHNLRDI 209
AD+LHN+R +
Sbjct: 237 ADRLHNMRTM 246
>sp|Q8CS97|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=relA PE=3 SV=1
Length = 729
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 11/134 (8%)
Query: 87 IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDT 146
++K+ A H Q RK+ G PYI HP+ VA ILT + ++ P I++ LHD +EDT
Sbjct: 28 VLKSYHIAYEAHKGQFRKN--GLPYIMHPIQVAGILTEM-RLDGPT-IVAGFLHDVIEDT 83
Query: 147 DTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQ------ILHAPHSSHEAKLVKLA 200
TFE+++ F + +V+ +T K + ++ Q + A LVKLA
Sbjct: 84 SYTFEDVKDMFNEEIARIVDGVTKLKKVKYRSKEEQQAENHRKLFIAIAKDVRVILVKLA 143
Query: 201 DKLHNLRDIERSLP 214
D+LHN+R + +++P
Sbjct: 144 DRLHNMRTL-KAMP 156
>sp|Q5HNR8|RELA_STAEQ GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=relA PE=3 SV=1
Length = 729
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 11/134 (8%)
Query: 87 IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDT 146
++K+ A H Q RK+ G PYI HP+ VA ILT + ++ P I++ LHD +EDT
Sbjct: 28 VLKSYHIAYEAHKGQFRKN--GLPYIMHPIQVAGILTEM-RLDGPT-IVAGFLHDVIEDT 83
Query: 147 DTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQ------ILHAPHSSHEAKLVKLA 200
TFE+++ F + +V+ +T K + ++ Q + A LVKLA
Sbjct: 84 SYTFEDVKDMFNEEIARIVDGVTKLKKVKYRSKEEQQAENHRKLFIAIAKDVRVILVKLA 143
Query: 201 DKLHNLRDIERSLP 214
D+LHN+R + +++P
Sbjct: 144 DRLHNMRTL-KAMP 156
>sp|O52177|RELA_MYXXA GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1
Length = 757
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 101/193 (52%), Gaps = 21/193 (10%)
Query: 79 HSPDAIMNIVK-ATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISA 137
+ PD ++I+K A +++ H Q RK G PY+ HP+ VA IL L + I++
Sbjct: 32 YHPDPDLDIIKKAYVYSAKVHQGQLRK--SGEPYLVHPLEVAGILGELK--LDEASIVTG 87
Query: 138 LLHDTVEDTDTTFEEIEREFGPRVRSVVEELTD------NKHMTRDERKR---CQILHAP 188
LLHDT+EDT T EE+ FG V +V+ +T + ++++E++ +++ A
Sbjct: 88 LLHDTIEDTLATEEELTELFGSEVAHLVDGVTKLSKFSASASLSQEEKQAENFRKMIIAM 147
Query: 189 HSSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGL--RGTNAPIEAE 246
LVKLAD+ HN+R ++ + +EE++ + D+ L R + I+ E
Sbjct: 148 AQDIRVILVKLADRTHNMRTLD-----HMSEEKQARIAQETLDIYAPLANRLGISWIKTE 202
Query: 247 LDALFAKYCTPRE 259
L+ L +Y P+E
Sbjct: 203 LEDLSFRYVKPQE 215
>sp|O87331|RELA_CORGL GTP pyrophosphokinase OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=relA PE=3 SV=2
Length = 760
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 89 KATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDT 148
+A D A H RK G PYI HP+AVA I +G + +++ALLHDTVEDTD
Sbjct: 57 RAYDTAERLHDGVIRK--SGDPYITHPLAVATIAAEIGM--DTTTLVAALLHDTVEDTDY 112
Query: 149 TFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILH----APHSSHEAKLVKLADKLH 204
+ +++ R+FG V +V+ +T + + + A ++K+AD+LH
Sbjct: 113 SLDDLTRDFGEEVARLVDGVTKLDKVALGAAAEAETIRKMIVAMSQDPRVLVIKVADRLH 172
Query: 205 NLRDIERSLP 214
N+R + R LP
Sbjct: 173 NMRTM-RFLP 181
>sp|O54408|RELA_BACSU GTP pyrophosphokinase OS=Bacillus subtilis (strain 168) GN=relA
PE=3 SV=3
Length = 734
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 95/188 (50%), Gaps = 17/188 (9%)
Query: 80 SPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALL 139
S + I + KA +A H Q RK G PYI HP+ VA IL L +P I L
Sbjct: 21 SDEHIAFVEKAYLYAEDAHREQYRKS--GEPYIIHPIQVAGILVDLE--MDPSTIAGGFL 76
Query: 140 HDTVEDTDTTFEEIEREFGPRVRSVVE---ELTDNKHMTRDERK---RCQILHAPHSSHE 193
HD VEDTD T ++++ F V +V+ +L K+ +++E++ ++ A
Sbjct: 77 HDVVEDTDVTLDDLKEAFSEEVAMLVDGVTKLGKIKYKSQEEQQAENHRKMFVAMAQDIR 136
Query: 194 AKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGL--RGTNAPIEAELDALF 251
L+KLAD+LHN+R + + LP +E++ + N ++ L R + I+ EL+
Sbjct: 137 VILIKLADRLHNMRTL-KHLP----QEKQRRISNETLEIFAPLAHRLGISKIKWELEDTA 191
Query: 252 AKYCTPRE 259
+Y P++
Sbjct: 192 LRYLNPQQ 199
>sp|P0AG26|SPOT_SHIFL Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Shigella flexneri GN=spoT PE=3 SV=1
Length = 702
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 10/134 (7%)
Query: 82 DAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHD 141
D I + +A A H Q R G PYI HPVAVA IL + + +++ALLHD
Sbjct: 18 DQIKRLRQAYLVARDAHEGQTRSS--GEPYITHPVAVACILAEMK--LDYETLMAALLHD 73
Query: 142 TVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQ------ILHAPHSSHEAK 195
+EDT T++++E+ FG V +VE ++ + ++K Q ++ A
Sbjct: 74 VIEDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVI 133
Query: 196 LVKLADKLHNLRDI 209
L+KLAD+ HN+R +
Sbjct: 134 LIKLADRTHNMRTL 147
>sp|P0AG24|SPOT_ECOLI Bifunctional (p)ppGpp synthase/hydrolase SpoT OS=Escherichia coli
(strain K12) GN=spoT PE=1 SV=1
Length = 702
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 10/134 (7%)
Query: 82 DAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHD 141
D I + +A A H Q R G PYI HPVAVA IL + + +++ALLHD
Sbjct: 18 DQIKRLRQAYLVARDAHEGQTRSS--GEPYITHPVAVACILAEMK--LDYETLMAALLHD 73
Query: 142 TVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQ------ILHAPHSSHEAK 195
+EDT T++++E+ FG V +VE ++ + ++K Q ++ A
Sbjct: 74 VIEDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVI 133
Query: 196 LVKLADKLHNLRDI 209
L+KLAD+ HN+R +
Sbjct: 134 LIKLADRTHNMRTL 147
>sp|P0AG25|SPOT_ECO57 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Escherichia coli O157:H7 GN=spoT PE=3 SV=1
Length = 702
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 10/134 (7%)
Query: 82 DAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHD 141
D I + +A A H Q R G PYI HPVAVA IL + + +++ALLHD
Sbjct: 18 DQIKRLRQAYLVARDAHEGQTRSS--GEPYITHPVAVACILAEMK--LDYETLMAALLHD 73
Query: 142 TVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQ------ILHAPHSSHEAK 195
+EDT T++++E+ FG V +VE ++ + ++K Q ++ A
Sbjct: 74 VIEDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVI 133
Query: 196 LVKLADKLHNLRDI 209
L+KLAD+ HN+R +
Sbjct: 134 LIKLADRTHNMRTL 147
>sp|P43811|SPOT_HAEIN Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=spoT PE=3 SV=1
Length = 677
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 8/108 (7%)
Query: 108 GTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIEREFGPRVRSVVEE 167
G PYI HPVAVA I+ L + +++ALLHD +EDT T E+++ EFG V +V+
Sbjct: 15 GEPYITHPVAVASIIAQLH--LDHEAVMAALLHDVIEDTPYTEEQLKEEFGASVAEIVDG 72
Query: 168 LTDNKHMTRDERKRCQI------LHAPHSSHEAKLVKLADKLHNLRDI 209
++ + R+ Q+ + A L+KLAD+ HN+R +
Sbjct: 73 VSKLDKLKFRTRQEAQVENFRKMILAMTRDIRVVLIKLADRTHNMRTL 120
>sp|O51216|SPOT_BORBU Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP
102532 / DSM 4680) GN=spoT PE=3 SV=1
Length = 667
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 11/137 (8%)
Query: 86 NIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVED 145
+I KA + A H+ Q R+ G PYI HP+ V+ L + I+ LLHD +ED
Sbjct: 39 SIFKALEIAEQLHYGQYRES--GEPYIIHPIMVSLFLAKFQ--LDFKATIAGLLHDVLED 94
Query: 146 TDTTFEEIEREFGPRVRSVVEELT---DNKHMTRDERKRCQILHAPHS-SHEAK--LVKL 199
T+ EEI +EF + S+++ +T D + TR ++ I + +H+ + ++KL
Sbjct: 95 TNVEKEEIVKEFDEEILSLIDGVTKIHDLHNKTRSIKEANTISKMFFAMTHDIRIIIIKL 154
Query: 200 ADKLHNLRDIERSLPVN 216
ADKLHN+ + LP N
Sbjct: 155 ADKLHNMTTLS-YLPKN 170
>sp|Q9KNM2|SPOT_VIBCH Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba
N16961) GN=spoT PE=1 SV=1
Length = 705
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 94 ASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEI 153
A H Q R G PYI HPVAVA IL + + + +ALLHD +ED D T E++
Sbjct: 30 ARDAHEGQTRSS--GEPYIIHPVAVARILAEMR--LDLETLQAALLHDVIEDCDVTKEDL 85
Query: 154 EREFGPRVRSVVEELTDNKHMTRDERKRCQ------ILHAPHSSHEAKLVKLADKLHNLR 207
+ FG V +V+ ++ + +RK Q ++ A L+KLAD+ N+R
Sbjct: 86 DAHFGSSVAELVDGVSKLDKLKFRDRKEAQAENFRKMVLAMVQDIRVILIKLADRTPNMR 145
Query: 208 DI 209
+
Sbjct: 146 TL 147
>sp|P75386|SPOT_MYCPN Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=spoT PE=3 SV=1
Length = 733
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 16/143 (11%)
Query: 80 SPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALL 139
+P+ + I KA D++ H Q+R G P+ HP+ A L SN V + LL
Sbjct: 33 APEVVALITKALDYSKKWHGEQKR--LSGEPFFIHPLRTALRLVEWNMDSNTVC--AGLL 88
Query: 140 HDTVEDTDTTFEEIEREFGPRVRSVVEELT----DNKHMTRDERKR--------CQILHA 187
HD +EDT T ++ FG + +V ++T ++K + RK+ I +
Sbjct: 89 HDIIEDTQVTEADLTAIFGKEITDLVVKVTKITSESKKQRQLNRKKEDLNLKSLVNIAMS 148
Query: 188 PHSSHEAKLVKLADKLHNLRDIE 210
A ++KLAD+L N+ IE
Sbjct: 149 SQQEVNALVLKLADRLDNISSIE 171
>sp|P47520|SPOT_MYCGE Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
NCTC 10195) GN=spoT PE=3 SV=1
Length = 720
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 87 IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDT 146
I KA A H Q+R G P+ HP+ A L +P+ I + LLHD +EDT
Sbjct: 27 INKAFYHAKTWHENQKR--LSGEPFFIHPLRTALSLVEWN--MDPITICAGLLHDIIEDT 82
Query: 147 DTTFEEIEREFGPRVRSVVEELTDNKHMTRDERK----------RCQILHAPHSSHEAK- 195
D T I F + +V ++T + ++ +R + + A +S E
Sbjct: 83 DQTEANIAMIFSKEIAELVTKVTKITNESKKQRHLKNKKENLNLKSFVNIAINSQQEINV 142
Query: 196 -LVKLADKLHNLRDIERSLPV 215
++KLAD+L N+ IE LP+
Sbjct: 143 MVLKLADRLDNIASIE-FLPI 162
>sp|Q4UNI5|SCA1_RICFE Putative surface cell antigen sca1 OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=sca1 PE=3 SV=1
Length = 1703
Score = 33.1 bits (74), Expect = 2.4, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Query: 131 PVVIISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRD------ERKRCQI 184
P++I + LL +T +D F + E P++R + LT N+ ++ E Q+
Sbjct: 864 PLIITNMLLSETSALSDDEFRAVANEVHPKIRPI---LTYNRQKEKEAKLVEAEAAHSQV 920
Query: 185 LH----APHSSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTN 240
+ P+S+ + V+ A KL + L +E + +Y+ + V + +
Sbjct: 921 VQNAIKTPNSTQAKEAVENAAKLFGQYNNSFKLTQALRDEHRKKYYETPKKVTDSINSLD 980
Query: 241 APIEAELDAL 250
+ AE L
Sbjct: 981 LAVPAESQQL 990
>sp|A6WWG6|ISPH_OCHA4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Ochrobactrum
anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168)
GN=ispH PE=3 SV=1
Length = 350
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 142 TVEDTDTTFEEIEREF----GPRVRSVVEELTDNKHMTRDERKRCQ---ILHAPHSSHEA 194
+V+DT EE++ F P S+ T+ + R C I+ AP+SS+
Sbjct: 178 SVDDTAGIIEELQARFPNLSAPAAESICYATTNRQDAVRSAAPGCDLFLIVGAPNSSNSK 237
Query: 195 KLVKLADKLHNLRD--IERSLPVNW 217
+LV++A+K ++R+ + W
Sbjct: 238 RLVEVAEKAGARMSMLVQRAADIEW 262
>sp|Q5R0N3|COAE_IDILO Dephospho-CoA kinase OS=Idiomarina loihiensis (strain ATCC BAA-735
/ DSM 15497 / L2-TR) GN=coaE PE=3 SV=1
Length = 202
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 114 HPVAVAHILTHLGKVSNPVVIISA--LLHDTVEDTDTTFEEIEREFGPRVR--SVVEELT 169
HP ILT L + S+P VI+SA LL + ++ ++ RV V EEL
Sbjct: 89 HPAIREEILTQLEQASSPYVILSAPLLLENNLD-----------KYCQRVLVVDVPEELQ 137
Query: 170 DNKHMTRDE--RKRCQILHAPHSSHEAKLVKLADKLHNLRDIER 211
+ + RDE ++ + + S +A+L K D L+N I++
Sbjct: 138 LQRTIQRDESPKEEVEAIMKAQLSRKARLRKADDILNNESSIDQ 181
>sp|Q1E2F4|DUS3_COCIM tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Coccidioides
immitis (strain RS) GN=DUS3 PE=3 SV=1
Length = 724
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 104 KDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIER 155
+D G+ +EHP + IL + VSN V + + + T +++ T + IER
Sbjct: 435 RDGAGSALLEHPSKLEKILRGMNAVSNEVPVSAKIRMGTKDNSPTALKLIER 486
>sp|P76245|YEAP_ECOLI Probable diguanylate cyclase YeaP OS=Escherichia coli (strain K12)
GN=yeaP PE=1 SV=2
Length = 341
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 17/71 (23%)
Query: 48 KGKPEAPAVEVHVHEARLGEA---PDTGDSDSGMHSPDAIMNIVKATDFASHKHHFQRRK 104
+G+ V+++ A LG P+T D+DS +H+ D M +Q +K
Sbjct: 281 RGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAM--------------YQEKK 326
Query: 105 DPEGTPYIEHP 115
+ TP++ HP
Sbjct: 327 HKQKTPFVAHP 337
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,742,634
Number of Sequences: 539616
Number of extensions: 4532389
Number of successful extensions: 11373
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 11266
Number of HSP's gapped (non-prelim): 54
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)