Query psy8734
Match_columns 264
No_of_seqs 133 out of 1212
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 17:51:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8734hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10872 relA (p)ppGpp synthet 100.0 1.7E-43 3.6E-48 358.2 14.8 176 77-262 26-213 (743)
2 PRK11092 bifunctional (p)ppGpp 100.0 1.9E-42 4.1E-47 350.2 14.6 180 76-262 12-197 (702)
3 COG0317 SpoT Guanosine polypho 100.0 7.2E-42 1.6E-46 342.5 10.8 178 77-262 18-202 (701)
4 TIGR00691 spoT_relA (p)ppGpp s 100.0 1.1E-39 2.5E-44 329.9 13.0 166 90-262 1-172 (683)
5 KOG1157|consensus 100.0 1.1E-33 2.3E-38 266.0 13.6 184 73-262 63-251 (543)
6 PF13328 HD_4: HD domain; PDB: 100.0 1.2E-32 2.7E-37 230.9 9.8 143 90-239 1-152 (153)
7 TIGR03276 Phn-HD phosphonate d 98.1 1.1E-05 2.4E-10 70.1 8.7 64 108-173 23-103 (179)
8 smart00471 HDc Metal dependent 95.2 0.16 3.4E-06 38.2 8.4 99 108-210 2-119 (124)
9 PF01966 HD: HD domain; Inter 94.3 0.035 7.5E-07 42.5 2.6 35 112-146 2-41 (122)
10 cd00077 HDc Metal dependent ph 93.2 0.51 1.1E-05 36.0 7.4 37 110-146 2-44 (145)
11 PRK12703 tRNA 2'-O-methylase; 91.4 1.6 3.4E-05 41.8 9.6 95 110-206 187-295 (339)
12 COG1418 Predicted HD superfami 90.3 0.91 2E-05 40.7 6.7 52 108-160 34-97 (222)
13 PRK03826 5'-nucleotidase; Prov 88.3 3.7 7.9E-05 36.2 8.9 97 109-207 27-142 (195)
14 PRK10119 putative hydrolase; P 88.3 3.4 7.3E-05 37.4 8.8 53 86-144 6-62 (231)
15 TIGR03401 cyanamide_fam HD dom 88.2 2.3 4.9E-05 38.4 7.6 113 82-207 36-167 (228)
16 TIGR03319 YmdA_YtgF conserved 86.2 2 4.3E-05 43.3 6.7 118 108-239 327-452 (514)
17 COG1896 Predicted hydrolases o 83.6 9.3 0.0002 33.5 9.0 98 108-206 31-141 (193)
18 PRK00106 hypothetical protein; 79.1 11 0.00024 38.3 8.8 121 107-239 347-473 (535)
19 PRK12704 phosphodiesterase; Pr 78.7 11 0.00023 38.1 8.6 37 108-144 333-372 (520)
20 PRK12705 hypothetical protein; 77.3 4 8.7E-05 41.1 5.1 37 107-144 320-360 (508)
21 PRK07152 nadD putative nicotin 76.6 6.7 0.00014 37.1 6.2 37 109-145 195-234 (342)
22 COG1078 HD superfamily phospho 73.0 2.6 5.7E-05 41.4 2.6 65 78-147 23-99 (421)
23 COG1713 Predicted HD superfami 72.1 4.4 9.6E-05 35.6 3.5 46 112-158 19-69 (187)
24 COG4341 Predicted HD phosphohy 70.7 9.6 0.00021 33.1 5.1 41 97-142 18-60 (186)
25 PF13023 HD_3: HD domain; PDB: 69.7 5.6 0.00012 33.8 3.5 98 108-207 20-129 (165)
26 TIGR00277 HDIG uncharacterized 69.4 6.2 0.00013 27.8 3.3 35 109-144 3-41 (80)
27 TIGR00488 putative HD superfam 67.2 4.9 0.00011 33.6 2.7 34 110-144 8-45 (158)
28 TIGR00295 conserved hypothetic 54.6 10 0.00022 32.1 2.5 92 109-204 12-124 (164)
29 PF05153 DUF706: Family of unk 48.0 31 0.00068 31.7 4.6 52 87-142 41-93 (253)
30 PRK03007 deoxyguanosinetriphos 46.6 33 0.00073 33.9 4.9 64 83-147 40-109 (428)
31 PF12917 HD_2: HD containing h 37.6 2E+02 0.0043 26.0 7.9 94 110-207 29-143 (215)
32 KOG1573|consensus 37.3 76 0.0017 27.7 5.0 33 108-142 94-127 (204)
33 PRK01286 deoxyguanosinetriphos 32.8 73 0.0016 30.5 4.7 62 85-148 34-102 (336)
34 PRK13480 3'-5' exoribonuclease 32.3 47 0.001 31.4 3.3 33 111-143 160-196 (314)
35 PRK05318 deoxyguanosinetriphos 31.8 28 0.0006 34.4 1.8 64 83-147 28-108 (432)
36 TIGR01353 dGTP_triPase deoxygu 29.9 41 0.0009 32.6 2.6 63 84-147 9-88 (381)
37 COG2316 Predicted hydrolase (H 27.7 1.9E+02 0.0042 25.4 6.0 66 109-175 46-125 (212)
38 PRK14758 hypothetical protein; 26.2 71 0.0015 19.4 2.1 14 6-19 9-22 (27)
39 COG4339 Uncharacterized protei 23.5 1.1E+02 0.0024 26.9 3.7 62 90-154 24-86 (208)
40 KOG0742|consensus 22.2 4.4E+02 0.0096 26.7 8.0 38 3-44 1-38 (630)
No 1
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=100.00 E-value=1.7e-43 Score=358.18 Aligned_cols=176 Identities=14% Similarity=0.197 Sum_probs=161.2
Q ss_pred CCCChhHHHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCCCCHHHHHHHhhhccccCCCCCHHHHHHH
Q psy8734 77 GMHSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIERE 156 (264)
Q Consensus 77 ~~~~~~~~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~~D~~~liAALLHDvvEDt~~t~eeL~~~ 156 (264)
.|+ +++.+.+.+|+.||.++|.| |++ |+||+.||++||.||+++ | +|.++++||||||++|||++|.++|++.
T Consensus 26 ~~~-~~~~~~i~~A~~~a~~~H~g--r~s--Gepyi~Hpl~vA~iLa~~-~-~D~~ti~AaLLHD~vedt~~t~e~i~~~ 98 (743)
T PRK10872 26 ITS-QQSCERLAETWAYCLQQTQG--HPD--ASLLLWRGVEMVEILSTL-S-MDIDTLRAALLFPLADANVVSEDVLRES 98 (743)
T ss_pred hhh-HHHHHHHHHHHHHHHHhccC--CCC--CChhhhhHHHHHHHHHHc-C-CCHHHHHHHHhhhhHhcCCCCHHHHHHH
Confidence 577 88999999999999999999 664 999999999999999985 4 8999999999999999999999999999
Q ss_pred hCHHHHHHHHHhhcCCCCCHH------HHHHHHHHHcCC------CCcchhHhHHHhHHhhhhhhhccCCcchhHHHHHH
Q psy8734 157 FGPRVRSVVEELTDNKHMTRD------ERKRCQILHAPH------SSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQ 224 (264)
Q Consensus 157 FG~~Va~LV~gLTk~~~l~~~------~r~~~q~e~lr~------~D~rvvLIKLADRL~NLR~l~~~~~e~~~~~~a~e 224 (264)
||++|+.||+||||+..+... .+...|.+++|+ .|+||+||||||||||||++..++++++.+ .|+|
T Consensus 99 FG~~Va~lVdgvtKl~~i~~~~~~~~~~~~~~qae~~RKmllam~~DiRVilIKLADRLhnmrTl~~~~~~kq~~-iA~E 177 (743)
T PRK10872 99 VGKSIVNLIHGVRDMDAIRQLKATHNDSVSSEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVL-AAKE 177 (743)
T ss_pred HCHHHHHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhcCChHHHHH-HHHH
Confidence 999999999999999987541 234458888876 899999999999999999999999888764 4999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCcccccc
Q psy8734 225 YFNWARDVVQGLRGTNAPIEAELDALFAKYCTPREGRE 262 (264)
Q Consensus 225 y~~~~a~La~~l~G~~~~lk~eLedl~~r~l~p~~y~~ 262 (264)
++++|+|||+|| |+ +++||||||||||||+|+.|++
T Consensus 178 Tl~IyAPlA~RL-Gi-~~iK~ELEDL~f~~l~P~~Y~~ 213 (743)
T PRK10872 178 CTNIYAPLANRL-GI-GQLKWELEDYCFRYLHPDEYKR 213 (743)
T ss_pred HHHHHHHHHHHh-Ch-HHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999 99 9999999999999999999975
No 2
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=100.00 E-value=1.9e-42 Score=350.23 Aligned_cols=180 Identities=29% Similarity=0.414 Sum_probs=165.4
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCCCCHHHHHHHhhhccccCCCCCHHHHHH
Q psy8734 76 SGMHSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIER 155 (264)
Q Consensus 76 ~~~~~~~~~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~~D~~~liAALLHDvvEDt~~t~eeL~~ 155 (264)
..|+++++.+.+.+|+.||.++|.||+|++ |+||+.|+++||.+|+++ | +|.++++||||||++|||++|.++|++
T Consensus 12 ~~~~~~~~~~~l~~A~~~A~~aH~gQ~rks--GePYi~Hpl~VA~iLa~l-~-~D~~ti~AaLLHDvvEDt~~t~e~i~~ 87 (702)
T PRK11092 12 QTYLPEDQIKRLRQAYLVARDAHEGQTRSS--GEPYITHPVAVACILAEM-R-LDYETLMAALLHDVIEDTPATYQDMEQ 87 (702)
T ss_pred HhhCCHHHHHHHHHHHHHHHHhccCCcCCC--CCcHHHHHHHHHHHHHHc-C-CCHHHHHHhcccchhhhCCCCHHHHHH
Confidence 368899999999999999999999999985 999999999999999985 4 799999999999999999999999999
Q ss_pred HhCHHHHHHHHHhhcCCCCCHHHHHHHHHHHcCC------CCcchhHhHHHhHHhhhhhhhccCCcchhHHHHHHHHHHH
Q psy8734 156 EFGPRVRSVVEELTDNKHMTRDERKRCQILHAPH------SSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWA 229 (264)
Q Consensus 156 ~FG~~Va~LV~gLTk~~~l~~~~r~~~q~e~lr~------~D~rvvLIKLADRL~NLR~l~~~~~e~~~~~~a~ey~~~~ 229 (264)
.||++|+.+|+||||+..+++..+...|.+++++ .|+||++||||||+||||++..++++++.+ .++|++++|
T Consensus 88 ~FG~~Va~lV~gvTk~~~l~~~~~~~~q~e~~rkmllam~~DiRVvlIKLADRlhNmrtL~~~~~ek~~~-iA~ETl~iy 166 (702)
T PRK11092 88 LFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRR-IARETLEIY 166 (702)
T ss_pred HHCHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHhcCCCceEEEEHHHHHhhHHHHHhcCccHHHH-HHHHHHHHH
Confidence 9999999999999999988765555557777654 799999999999999999999998887654 599999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcCcccccc
Q psy8734 230 RDVVQGLRGTNAPIEAELDALFAKYCTPREGRE 262 (264)
Q Consensus 230 a~La~~l~G~~~~lk~eLedl~~r~l~p~~y~~ 262 (264)
+|||+|| |+ +++||||||||||||+|+.|++
T Consensus 167 aPlA~rl-Gi-~~ik~eLedL~f~~l~P~~y~~ 197 (702)
T PRK11092 167 SPLAHRL-GI-HHIKTELEELGFEALYPNRYRV 197 (702)
T ss_pred HHHHHHh-Ch-HHHHHHHHHHHHHhhCHHHHHH
Confidence 9999999 99 8899999999999999999974
No 3
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=100.00 E-value=7.2e-42 Score=342.54 Aligned_cols=178 Identities=33% Similarity=0.422 Sum_probs=157.3
Q ss_pred CCCChhHHHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCCCCHHHHHHHhhhccccCCCCCHHHHHHH
Q psy8734 77 GMHSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIERE 156 (264)
Q Consensus 77 ~~~~~~~~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~~D~~~liAALLHDvvEDt~~t~eeL~~~ 156 (264)
.|.++.+.. +.+|+.||.++|.+|.|++ |+||+.||++||.+|+++. +|.++++||||||++|||++|.++|++.
T Consensus 18 ~~~~~~~~~-l~kA~~~A~q~H~~q~r~S--GePYi~Hpl~Va~iLael~--~d~~tl~AaLLHD~vEDt~~t~e~i~~~ 92 (701)
T COG0317 18 TYLPPVDIE-LKKAWYYARQAHGGQTRKS--GEPYISHPLEVAEILAELH--MDMETLAAALLHDTIEDTPVTEELIEEI 92 (701)
T ss_pred hcCChHHHH-HHHHHHHHHHHhHhhcCcC--CCchhhCHHHHHHHHHHcc--CCHHHHHHHHccchHhcCCCCHHHHHHH
Confidence 444445545 9999999999999999985 9999999999999999864 7999999999999999999999999999
Q ss_pred hCHHHHHHHHHhhcCCCC-CHHHHHHHHHHHcC------CCCcchhHhHHHhHHhhhhhhhccCCcchhHHHHHHHHHHH
Q psy8734 157 FGPRVRSVVEELTDNKHM-TRDERKRCQILHAP------HSSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWA 229 (264)
Q Consensus 157 FG~~Va~LV~gLTk~~~l-~~~~r~~~q~e~lr------~~D~rvvLIKLADRL~NLR~l~~~~~e~~~~~~a~ey~~~~ 229 (264)
||++|++||+||||+..+ ........|.++++ ..|+||++|||||||||||++...+++++.+ .+++++++|
T Consensus 93 FG~eVa~LV~GvTkl~~i~~~~~~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~~~~ek~~r-iakETl~Iy 171 (701)
T COG0317 93 FGKEVAKLVEGVTKLKKIGQLSSEEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKRRR-IARETLDIY 171 (701)
T ss_pred HCHHHHHHHhhHHHhhhhhccCccchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCccCCHHHHHH-HHHHHHHHH
Confidence 999999999999999998 33333334666654 4899999999999999999999965666654 489999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcCcccccc
Q psy8734 230 RDVVQGLRGTNAPIEAELDALFAKYCTPREGRE 262 (264)
Q Consensus 230 a~La~~l~G~~~~lk~eLedl~~r~l~p~~y~~ 262 (264)
+|||+|| |+ +++||||||++|||++|++|+.
T Consensus 172 APLA~RL-Gi-~~iK~ELEDlsFr~l~P~~Y~~ 202 (701)
T COG0317 172 APLAHRL-GI-GQIKWELEDLSFRYLHPDQYKR 202 (701)
T ss_pred HHHHHHh-hh-HHHHHHHHhhhhhhhChHHHHH
Confidence 9999999 99 9999999999999999999984
No 4
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=100.00 E-value=1.1e-39 Score=329.93 Aligned_cols=166 Identities=35% Similarity=0.500 Sum_probs=152.4
Q ss_pred HHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCCCCHHHHHHHhhhccccCCCCCHHHHHHHhCHHHHHHHHHhh
Q psy8734 90 ATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELT 169 (264)
Q Consensus 90 Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~~D~~~liAALLHDvvEDt~~t~eeL~~~FG~~Va~LV~gLT 169 (264)
|+.||.++|.||+|++ |.||+.|+++||.+|+++ | +|.++++||||||++|||++|.++|++.||++|+++|++||
T Consensus 1 A~~~A~~aH~gQ~rks--g~PYi~Hpl~VA~iL~~~-~-~D~~~i~AaLLHDvvEDt~~t~e~i~~~FG~~Va~lV~~vT 76 (683)
T TIGR00691 1 ALEIAKDLHEGQKRKS--GEPYIIHPLAVALILAEL-G-MDEETVCAALLHDVIEDTPVTEEEIEEEFGEEVAELVDGVT 76 (683)
T ss_pred CHHHHHHhcccCcCCC--CCcHHHHHHHHHHHHHHh-C-CCHHHHHHHhccchHhcCCCCHHHHHHHHCHHHHHHHHHHH
Confidence 6789999999999985 999999999999999985 4 79999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHcC------CCCcchhHhHHHhHHhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHhcCCCHHH
Q psy8734 170 DNKHMTRDERKRCQILHAP------HSSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPI 243 (264)
Q Consensus 170 k~~~l~~~~r~~~q~e~lr------~~D~rvvLIKLADRL~NLR~l~~~~~e~~~~~~a~ey~~~~a~La~~l~G~~~~l 243 (264)
|++.+++.++...|.++++ ..|+||++||||||+||||++..++++++.+ .++|++++|+|||+|| |+ +++
T Consensus 77 k~~~~~~~~~~~~q~e~~rkmlla~~~d~rvvlVKLADrlhNmrtl~~~~~~k~~~-iA~Et~~iyaPlA~rL-G~-~~i 153 (683)
T TIGR00691 77 KITKLKKKSRQELQAENFRKMILAMAQDIRVIVIKLADRLHNMRTLDFLPPEKQKR-IAKETLEIYAPLAHRL-GM-SSI 153 (683)
T ss_pred HhcccccchhhHHHHHHHHHHHHhhcCCcceEeeeHHHHHhHHHHHHhhChHHHHH-HHHHHHHHHHHHHHHh-Ch-HHH
Confidence 9999887666666777765 4799999999999999999999998887654 4899999999999999 99 899
Q ss_pred HHHHHHHHHhhcCcccccc
Q psy8734 244 EAELDALFAKYCTPREGRE 262 (264)
Q Consensus 244 k~eLedl~~r~l~p~~y~~ 262 (264)
||||||||||||+|+.|++
T Consensus 154 k~eLedl~f~~l~p~~y~~ 172 (683)
T TIGR00691 154 KTELEDLSFKYLYPKEYEN 172 (683)
T ss_pred HHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999974
No 5
>KOG1157|consensus
Probab=100.00 E-value=1.1e-33 Score=265.99 Aligned_cols=184 Identities=34% Similarity=0.463 Sum_probs=166.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCCCCHHHHHHHhhhccccCCCCCHHH
Q psy8734 73 DSDSGMHSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEE 152 (264)
Q Consensus 73 ~~~~~~~~~~~~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~~D~~~liAALLHDvvEDt~~t~ee 152 (264)
...+-|++.-+...+-+|+.+|+.+|.+|.|++ .|+||+.|++.++.||+++. +|..+++||+|||+|+|+..|.++
T Consensus 63 R~~~~~~~t~~s~lv~KAl~~Aa~~HR~Q~Rad-~~rPY~nH~i~ta~iLAd~~--~ds~Vv~AaiLHDVVDDt~~S~ee 139 (543)
T KOG1157|consen 63 RRAQLWHKTFSSELVIKALYEAAKAHRGQMRAD-DDRPYLNHCIETAMILADIG--ADSTVVVAAILHDVVDDTFMSYEE 139 (543)
T ss_pred hhhhhhhhcCcHHHHHHHHHHHHHHHhcccccC-CCCchhhhHHHHHHHHHHhh--cchHHHHHHHHHHHHhhccCCHHH
Confidence 345577888888999999999999999999997 57799999999999999864 899999999999999999999999
Q ss_pred HHHHhCHHHHHHHHHhhcCCCCCHHHHHHH-HHH----HcCCCCcchhHhHHHhHHhhhhhhhccCCcchhHHHHHHHHH
Q psy8734 153 IEREFGPRVRSVVEELTDNKHMTRDERKRC-QIL----HAPHSSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFN 227 (264)
Q Consensus 153 L~~~FG~~Va~LV~gLTk~~~l~~~~r~~~-q~e----~lr~~D~rvvLIKLADRL~NLR~l~~~~~e~~~~~~a~ey~~ 227 (264)
|.+.||.+|+.+|+++|+.+.++...|+.. |++ ++.+.+.|++||||||+|+|||++...+|..|+++ ..+.+.
T Consensus 140 I~~~FG~gVa~LV~EvtddKnL~K~eRk~l~qiet~~~fyak~s~RAvLIkLADKLdNMRdL~~lpPvgwq~~-r~e~lf 218 (543)
T KOG1157|consen 140 ILRHFGTGVADLVEEVTDDKNLSKLERKNLTQIETVEMFYAKASARAVLIKLADKLDNMRDLYALPPVGWQRF-RKETLF 218 (543)
T ss_pred HHHHhCccHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhHHH-HHHHHH
Confidence 999999999999999999999998887765 777 44567899999999999999999999999999976 567777
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhcCcccccc
Q psy8734 228 WARDVVQGLRGTNAPIEAELDALFAKYCTPREGRE 262 (264)
Q Consensus 228 ~~a~La~~l~G~~~~lk~eLedl~~r~l~p~~y~~ 262 (264)
+++|+|+++ |+ ...+.++++++|+|++|+.|-+
T Consensus 219 Iwapla~~~-g~-gtn~~lle~Ldf~~l~p~~~~~ 251 (543)
T KOG1157|consen 219 IWAPLANRL-GI-GTNKVLLENLDFKHLFPCQHIE 251 (543)
T ss_pred HhhHHHHHh-cc-cchHHHHhhhhHHHhCchhHHH
Confidence 999999999 77 6799999999999999998743
No 6
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=99.98 E-value=1.2e-32 Score=230.94 Aligned_cols=143 Identities=40% Similarity=0.567 Sum_probs=95.1
Q ss_pred HHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCCCCHHHHHHHhhhccccCCCCCHHHHHHHhCHHHHHHHHHhh
Q psy8734 90 ATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELT 169 (264)
Q Consensus 90 Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~~D~~~liAALLHDvvEDt~~t~eeL~~~FG~~Va~LV~gLT 169 (264)
|+.||.+.|.+|++++ |.||+.|+++||.+|.+. | .|.++++||||||++||+..+ ++|++.||++|+++|.++|
T Consensus 1 A~~~A~~~h~~~~~~~--g~py~~H~~~va~~l~~~-~-~d~~~i~aalLHD~ied~~~~-~~i~~~fg~~V~~lV~~lt 75 (153)
T PF13328_consen 1 ALAFAAEAHAGQRRKS--GEPYISHPLEVAEILAEL-G-LDEETIAAALLHDVIEDTETT-EDIEERFGEDVADLVDALT 75 (153)
T ss_dssp HHHHHHHHTTT-B-ST----BTTHHHHHHHHHHHTS-----HHHHHHHHHTTHHHHSS---HHHHHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHhcccCCC--CCcHHHHHHHHHHHHHHc-C-CCHHHHhhheeecHHHhcCCH-HHHHHccChHHHHHHHHHH
Confidence 7899999999888775 999999999999999875 5 799999999999999999655 9999999999999999999
Q ss_pred cCCCCCHH---HHHHHHHHHcCC------CCcchhHhHHHhHHhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHhcCC
Q psy8734 170 DNKHMTRD---ERKRCQILHAPH------SSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGT 239 (264)
Q Consensus 170 k~~~l~~~---~r~~~q~e~lr~------~D~rvvLIKLADRL~NLR~l~~~~~e~~~~~~a~ey~~~~a~La~~l~G~ 239 (264)
+.+.++.. .+...+++++++ .|+++++||||||+||||++...+++++. ..++++.++|+|||++| |+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~r~ml~~~~~d~~~~lIKlaDrl~nl~~~~~~~~~~~~-~~a~Et~~i~apLA~rL-Gi 152 (153)
T PF13328_consen 76 KIKKLSKKPWEERSEEYAERLRRMLLAMSEDVRAVLIKLADRLHNLRTIKYLPPEKQR-RYARETLDIYAPLAHRL-GI 152 (153)
T ss_dssp --TTS-HH---HHHHHHHHHGGG-----S-H-HHHHHHHHHHHHHHHHHHH---TT-----------------------
T ss_pred hccccccccchhhHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhccHHHCCHHHhh-hhhhccccccccccccc-cC
Confidence 99988755 456678888876 57899999999999999999888777765 45889999999999999 87
No 7
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=98.14 E-value=1.1e-05 Score=70.13 Aligned_cols=64 Identities=20% Similarity=0.359 Sum_probs=52.3
Q ss_pred CCchhhhHHHHHHHHHHcCCCCCHHHHHHHhhhcc---ccCCC--------------CCHHHHHHHhCHHHHHHHHHhhc
Q psy8734 108 GTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDT---VEDTD--------------TTFEEIEREFGPRVRSVVEELTD 170 (264)
Q Consensus 108 G~PYi~H~l~VA~iL~~l~g~~D~~~liAALLHDv---vEDt~--------------~t~eeL~~~FG~~Va~LV~gLTk 170 (264)
..+++.|++++|.+.... | .|.+.++||||||+ +++.. +..+.|+..||++|+.+|..-..
T Consensus 23 ~Vs~leH~LQ~A~lA~~~-G-ad~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~~F~~~V~~lV~~Hv~ 100 (179)
T TIGR03276 23 AVSQLEHALQCAQLAEAA-G-ADDELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLRELFSPSVTEPIRLHVQ 100 (179)
T ss_pred CCcHHHHHHHHHHHHHHc-C-CCHHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 457899999999877765 4 69999999999998 67543 22578888999999999999886
Q ss_pred CCC
Q psy8734 171 NKH 173 (264)
Q Consensus 171 ~~~ 173 (264)
.+.
T Consensus 101 aKr 103 (179)
T TIGR03276 101 AKR 103 (179)
T ss_pred HHH
Confidence 654
No 8
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=95.22 E-value=0.16 Score=38.19 Aligned_cols=99 Identities=21% Similarity=0.215 Sum_probs=51.7
Q ss_pred CCchhhhHHHHHHHHHHcC---CC-CCHHHHHHHhhhccccCCCCCHHH----HHHHhCHHHHHHHHHhhcCCCCCHHHH
Q psy8734 108 GTPYIEHPVAVAHILTHLG---KV-SNPVVIISALLHDTVEDTDTTFEE----IEREFGPRVRSVVEELTDNKHMTRDER 179 (264)
Q Consensus 108 G~PYi~H~l~VA~iL~~l~---g~-~D~~~liAALLHDvvEDt~~t~ee----L~~~FG~~Va~LV~gLTk~~~l~~~~r 179 (264)
+.+.+.|.+.|+.+..... +. ......+||||||+-......... ....++...+.++.. ..++....
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~~~~~~~~~~~~~~~h~~~~~~~~~~----~~~~~~~~ 77 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGTPDSFLVKTSVLEDHHFIGAEILLE----EEEPRILE 77 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCccCCHHHhcCccHHHHhHHHHHHHHHh----CCCCHHHH
Confidence 4677899999998765321 11 124578999999987754321110 011122222222222 12221111
Q ss_pred HH------HHHHHc-----CCCCcchhHhHHHhHHhhhhhhh
Q psy8734 180 KR------CQILHA-----PHSSHEAKLVKLADKLHNLRDIE 210 (264)
Q Consensus 180 ~~------~q~e~l-----r~~D~rvvLIKLADRL~NLR~l~ 210 (264)
.. .+.... ......+.++++||++++++...
T Consensus 78 ~~~~~~i~~h~~~~~~~~~~~~~~~~~il~~aD~~~~~~~~~ 119 (124)
T smart00471 78 EILATAILSHHERPDGLRGEPITLEARIVKVADRLDALRRDR 119 (124)
T ss_pred HHHhhHHHHhccccCCCCCCcCCHHHHHHHHHHHHHHHhcCC
Confidence 10 011101 12456899999999999987654
No 9
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=94.32 E-value=0.035 Score=42.52 Aligned_cols=35 Identities=31% Similarity=0.417 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHcCCCC----CH-HHHHHHhhhccccCC
Q psy8734 112 IEHPVAVAHILTHLGKVS----NP-VVIISALLHDTVEDT 146 (264)
Q Consensus 112 i~H~l~VA~iL~~l~g~~----D~-~~liAALLHDvvEDt 146 (264)
+.|.+.|+.+...+.... |. -..+||||||+=.-.
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~ 41 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIP 41 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHS
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCC
Confidence 579999998876543100 11 167999999986644
No 10
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=93.17 E-value=0.51 Score=35.98 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=25.4
Q ss_pred chhhhHHHHHHHHHHcCCCC------CHHHHHHHhhhccccCC
Q psy8734 110 PYIEHPVAVAHILTHLGKVS------NPVVIISALLHDTVEDT 146 (264)
Q Consensus 110 PYi~H~l~VA~iL~~l~g~~------D~~~liAALLHDvvEDt 146 (264)
+.+.|.+.|+.+...+.... .....+||||||+-+..
T Consensus 2 ~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 2 HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred chHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 35789999888765432101 24578999999998754
No 11
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=91.39 E-value=1.6 Score=41.83 Aligned_cols=95 Identities=23% Similarity=0.226 Sum_probs=53.1
Q ss_pred chhhhHHHHHHHHH---HcCCCCCHH-HHHHHhhhccccCCCC-------CHHHHHH-HhCHHHHHHHHHhhcCCCCCHH
Q psy8734 110 PYIEHPVAVAHILT---HLGKVSNPV-VIISALLHDTVEDTDT-------TFEEIER-EFGPRVRSVVEELTDNKHMTRD 177 (264)
Q Consensus 110 PYi~H~l~VA~iL~---~l~g~~D~~-~liAALLHDvvEDt~~-------t~eeL~~-~FG~~Va~LV~gLTk~~~l~~~ 177 (264)
..+.|+.+|+.... ...+ .|.+ .++||||||+-..... ..+-|++ .|.++++.+|+.... .+++..
T Consensus 187 ~l~~Hs~rVa~lA~~LA~~~~-~D~~ll~aAALLHDIGK~k~~~~~H~~~Ga~iL~e~G~~e~i~~iIe~H~g-~G~~~~ 264 (339)
T PRK12703 187 LLIRHVKTVYKLAMRIADCIN-ADRRLVAAGALLHDIGRTKTNGIDHAVAGAEILRKENIDDRVVSIVERHIG-AGITSE 264 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHCCCCHHHHHHHHHHhc-cCCCcc
Confidence 35789999987643 3233 4655 5578999998654321 2334433 466788888876552 122211
Q ss_pred HHHHHHHH--HcCCCCcchhHhHHHhHHhhh
Q psy8734 178 ERKRCQIL--HAPHSSHEAKLVKLADKLHNL 206 (264)
Q Consensus 178 ~r~~~q~e--~lr~~D~rvvLIKLADRL~NL 206 (264)
+....... .....+....+|-.||++...
T Consensus 265 ~~~~~gL~~~~~~P~TLEakIV~dADrL~~~ 295 (339)
T PRK12703 265 EAQKLGLPVKDYVPETIEEMIVAHADNLFAG 295 (339)
T ss_pred hhhccCCccccCCCCCHHHHHHHHHHHHhcC
Confidence 10000000 011234577899999999765
No 12
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=90.33 E-value=0.91 Score=40.70 Aligned_cols=52 Identities=31% Similarity=0.390 Sum_probs=36.7
Q ss_pred CCchhhhHHHHHHHH---HHcCCCCCHH-HHHHHhhhccccCCCCCH--------HHHHHHhCHH
Q psy8734 108 GTPYIEHPVAVAHIL---THLGKVSNPV-VIISALLHDTVEDTDTTF--------EEIEREFGPR 160 (264)
Q Consensus 108 G~PYi~H~l~VA~iL---~~l~g~~D~~-~liAALLHDvvEDt~~t~--------eeL~~~FG~~ 160 (264)
|+.-+.|+++|+.+. +...| .|.+ +..||||||+..-..... .++.+.|+..
T Consensus 34 ~~~~l~H~~~Va~lA~~Ia~~~g-~D~~l~~~aaLLHDIg~~~~~~~~~~h~~~gae~a~~~~~~ 97 (222)
T COG1418 34 GQHVLEHSLRVAYLAYRIAEEEG-VDPDLALRAALLHDIGKAIDHEPGGSHAEIGAEIARKFLED 97 (222)
T ss_pred cchHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhhccccccCCccchHHHHHHHHHHHccc
Confidence 788899999999863 34445 4776 568999999887544332 2566667765
No 13
>PRK03826 5'-nucleotidase; Provisional
Probab=88.28 E-value=3.7 Score=36.18 Aligned_cols=97 Identities=25% Similarity=0.247 Sum_probs=48.4
Q ss_pred CchhhhHHHHHHHHHH--------cCCCCCHH-HHHHHhhhccccCC-C-C-CH-----HHHHHHhCHHHHHHHHHhhcC
Q psy8734 109 TPYIEHPVAVAHILTH--------LGKVSNPV-VIISALLHDTVEDT-D-T-TF-----EEIEREFGPRVRSVVEELTDN 171 (264)
Q Consensus 109 ~PYi~H~l~VA~iL~~--------l~g~~D~~-~liAALLHDvvEDt-~-~-t~-----eeL~~~FG~~Va~LV~gLTk~ 171 (264)
+.-..|...||.+..- .++..|.+ ++..||+||+.|-- + + ++ ..+.+.+.+-=....+.+..
T Consensus 27 EsVAeHs~~vAliA~~La~i~~~~~~~~vd~~rv~~~aL~HDl~E~~tGDi~tPvK~~~~~~~~~~~~~E~~a~~~l~~- 105 (195)
T PRK03826 27 ENVSEHSLQVAMVAHALAVIKNRKFGGNLNAERIALLAMYHDASEVLTGDLPTPVKYFNPEIAHEYKKIEKIAEQKLLD- 105 (195)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcchHHHhcCCcccccccccchhHHHHHHHHHHHHHHHHH-
Confidence 4556899999887331 12234655 67789999998832 1 1 21 22222222110111222221
Q ss_pred CCCCHHHH--HHHHHHHcCCCCcchhHhHHHhHHhhhh
Q psy8734 172 KHMTRDER--KRCQILHAPHSSHEAKLVKLADKLHNLR 207 (264)
Q Consensus 172 ~~l~~~~r--~~~q~e~lr~~D~rvvLIKLADRL~NLR 207 (264)
.++..-+ -..........++...+||.||+++-+-
T Consensus 106 -~LP~~l~~~~~~~~~e~e~~~~Ea~lvK~aDkL~a~l 142 (195)
T PRK03826 106 -MLPEELQEDFRPLLDSHAASEEEKAIVKQADALCAYL 142 (195)
T ss_pred -hCCHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHH
Confidence 1221111 1111111223466899999999998753
No 14
>PRK10119 putative hydrolase; Provisional
Probab=88.26 E-value=3.4 Score=37.40 Aligned_cols=53 Identities=17% Similarity=0.153 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHH---HcCCCCCHH-HHHHHhhhcccc
Q psy8734 86 NIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILT---HLGKVSNPV-VIISALLHDTVE 144 (264)
Q Consensus 86 ~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~---~l~g~~D~~-~liAALLHDvvE 144 (264)
.+.++..|..+...+.- ...-+.|..+|..... +.-| .|.. +.+||||||+..
T Consensus 6 ~~~~~~~~v~~~l~~~~-----~~HD~~Hi~RV~~lA~~Ia~~e~-~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 6 WQAQFENWLKNHHQHQD-----AAHDICHFRRVWATAQKLAADDD-VDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHHHHHHHHHhhcCC-----CccChHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhhcch
Confidence 45566677766655431 2234778888775433 2223 3554 669999999964
No 15
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=88.17 E-value=2.3 Score=38.37 Aligned_cols=113 Identities=18% Similarity=0.183 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHc-------CCCCCHH-HHHHHhhhcccc-CCCCCHHH
Q psy8734 82 DAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHL-------GKVSNPV-VIISALLHDTVE-DTDTTFEE 152 (264)
Q Consensus 82 ~~~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l-------~g~~D~~-~liAALLHDvvE-Dt~~t~ee 152 (264)
.+...++++.+|+.+.+.. .-+.|+++|....... .+ .|.+ ..+||||||+-- +.......
T Consensus 36 Pdt~l~~~a~~~~~~~l~~---------~~~~Hs~RV~~~a~~ia~~e~~~~~-~D~evl~lAALLHDIG~~~~~~~~~~ 105 (228)
T TIGR03401 36 PDTPLVKFAQEYAKARLPP---------ETYNHSLRVYYYGLAIARDQFPEWD-LSDETWFLTCLLHDIGTTDENMTATK 105 (228)
T ss_pred CChHHHHHHHHHHHhhCCH---------hhhHHHHHHHHHHHHHHHHhccccC-CCHHHHHHHHHHHhhccccccCCccc
Confidence 4778899999998776432 3378999987543221 13 4665 569999999864 22211112
Q ss_pred HH-HHhCHHHH-HHHHHhhcCCCCCHHHHHH--HHHHH--cC----CCCcchhHhHHHhHHhhhh
Q psy8734 153 IE-REFGPRVR-SVVEELTDNKHMTRDERKR--CQILH--AP----HSSHEAKLVKLADKLHNLR 207 (264)
Q Consensus 153 L~-~~FG~~Va-~LV~gLTk~~~l~~~~r~~--~q~e~--lr----~~D~rvvLIKLADRL~NLR 207 (264)
+. +..|...+ +++...+ +.+...... .-+.. .. ..++.+.||..||+++++-
T Consensus 106 ~~fe~~ga~~A~~~L~~~~---G~~~~~~~~V~~aI~~H~~~~~~~~~~~e~~lvq~Ad~lDa~G 167 (228)
T TIGR03401 106 MSFEFYGGILALDVLKEQT---GANQDQAEAVAEAIIRHQDLGVDGTITTLGQLLQLATIFDNVG 167 (228)
T ss_pred CCHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHhHcc
Confidence 21 12233222 2333221 333221110 00000 00 1256899999999999974
No 16
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=86.20 E-value=2 Score=43.27 Aligned_cols=118 Identities=24% Similarity=0.254 Sum_probs=57.6
Q ss_pred CCchhhhHHHHHHH---HHHcCCCCCHH-HHHHHhhhccccCCCCCHHHHHHHhCHHHHHHHHHhhcCCCCCHHHH-HHH
Q psy8734 108 GTPYIEHPVAVAHI---LTHLGKVSNPV-VIISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDER-KRC 182 (264)
Q Consensus 108 G~PYi~H~l~VA~i---L~~l~g~~D~~-~liAALLHDvvEDt~~t~eeL~~~FG~~Va~LV~gLTk~~~l~~~~r-~~~ 182 (264)
|...+.|.++||.+ ++...| .|.+ ...||||||+=.... .+ + .|....-...-+.+....+.... -..
T Consensus 327 ~~~~l~Hs~~VA~lA~~LA~~lg-ld~~~a~~AGLLHDIGK~~~--~e-~---~~~H~~~Ga~ll~~~~~~~~V~~aI~~ 399 (514)
T TIGR03319 327 GQNVLQHSIEVAHLAGIMAAELG-EDVKLAKRAGLLHDIGKAVD--HE-V---EGSHVEIGAELAKKYKESPEVVNAIAA 399 (514)
T ss_pred CccHHHHHHHHHHHHHHHHHHhC-cCHHHHHHHHHHHhcCcccc--hh-h---cccHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45568899999986 444456 3554 667999999744211 11 1 11111111111222211100000 000
Q ss_pred HHHHcCCCCcchhHhHHHhHHhhhhhhhccCCcchhHHHHHHHHH---HHHHHHHHhcCC
Q psy8734 183 QILHAPHSSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFN---WARDVVQGLRGT 239 (264)
Q Consensus 183 q~e~lr~~D~rvvLIKLADRL~NLR~l~~~~~e~~~~~~a~ey~~---~~a~La~~l~G~ 239 (264)
+.+.....++-+.+|.+||.++..|.=.+ . +....|.+ --..+++...|.
T Consensus 400 HH~~~~~~~~~a~IV~~AD~lsa~rpgar------~-e~~~~~~~rl~~le~i~~~~~gv 452 (514)
T TIGR03319 400 HHGDVEPTSIEAVLVAAADALSAARPGAR------R-ESLENYIKRLEKLEEIANSFEGV 452 (514)
T ss_pred hCCCCCCCCHHHHHHHHHHHhcCCCCCCc------c-cCHHHHHHHHHHHHHHHHhCCCc
Confidence 00011124678889999999998873221 1 12333433 345566666565
No 17
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=83.65 E-value=9.3 Score=33.54 Aligned_cols=98 Identities=28% Similarity=0.194 Sum_probs=52.9
Q ss_pred CCchhhhHHHHHHHHH-------HcCCCCCH-HHHHHHhhhccccCC----CCCHHHHHHHhCHHHHHHHHHhhcCC-CC
Q psy8734 108 GTPYIEHPVAVAHILT-------HLGKVSNP-VVIISALLHDTVEDT----DTTFEEIEREFGPRVRSVVEELTDNK-HM 174 (264)
Q Consensus 108 G~PYi~H~l~VA~iL~-------~l~g~~D~-~~liAALLHDvvEDt----~~t~eeL~~~FG~~Va~LV~gLTk~~-~l 174 (264)
++.-..|...||.+.. ..++..|. ..+..||+||..|-- +..............-+..+.+.+.. +.
T Consensus 31 ~eSvaeHs~~va~la~~la~~~~~~~~~vn~~k~~~~AL~HD~~E~~~GDi~tp~k~~~~~~~~~~~e~e~~~~~~~~~~ 110 (193)
T COG1896 31 PESVAEHSFRVAILALLLADILNAKGGEVNPEKVALMALVHDLPEALTGDIPTPVKYARAGLYKEEEEAEEAAIHLLFGL 110 (193)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHhcccHHHHhCCCCCchhhhcchHHHHHHHHHHHHHHcccCC
Confidence 5677789888877522 21111343 377899999998842 22222233334444444344443322 11
Q ss_pred CHHHHHHHHHHHcCCCCcchhHhHHHhHHhhh
Q psy8734 175 TRDERKRCQILHAPHSSHEAKLVKLADKLHNL 206 (264)
Q Consensus 175 ~~~~r~~~q~e~lr~~D~rvvLIKLADRL~NL 206 (264)
+ .+-....-+.....+..+.+||.||+++.+
T Consensus 111 p-~e~~~~~~~~~~~~s~ea~~vk~aDkl~~~ 141 (193)
T COG1896 111 P-EELLELFREYEKRSSLEARIVKDADKLELL 141 (193)
T ss_pred c-HHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 1 111111111112368899999999999987
No 18
>PRK00106 hypothetical protein; Provisional
Probab=79.10 E-value=11 Score=38.28 Aligned_cols=121 Identities=20% Similarity=0.124 Sum_probs=61.9
Q ss_pred CCCchhhhHHHHHHHH---HHcCCCCC-HHHHHHHhhhccccCCCCCHHHHHHHhCHHHHHHHHHhhcCCCCCHHH-H-H
Q psy8734 107 EGTPYIEHPVAVAHIL---THLGKVSN-PVVIISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDE-R-K 180 (264)
Q Consensus 107 sG~PYi~H~l~VA~iL---~~l~g~~D-~~~liAALLHDvvEDt~~t~eeL~~~FG~~Va~LV~gLTk~~~l~~~~-r-~ 180 (264)
-|...+.|.+.||.+. +...| .| ...-.||||||+=.-.+ .+ .+|..+.-...-+.+.. .+..- . -
T Consensus 347 y~qnl~~HSv~VA~lA~~lA~~lg-ld~e~a~~AGLLHDIGK~v~--~e----~~g~Ha~iGa~ll~~~~-~~~~v~~aI 418 (535)
T PRK00106 347 YGQNVLRHSVEVGKLAGILAGELG-ENVALARRAGFLHDMGKAID--RE----VEGSHVEIGMEFARKYK-EHPVVVNTI 418 (535)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHhccCccC--cc----ccCChHHHHHHHHHHcC-CCHHHHHHH
Confidence 3677899999998863 44456 46 45779999999744322 11 12222222222222222 12110 0 0
Q ss_pred HHHHHHcCCCCcchhHhHHHhHHhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHhcCC
Q psy8734 181 RCQILHAPHSSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGT 239 (264)
Q Consensus 181 ~~q~e~lr~~D~rvvLIKLADRL~NLR~l~~~~~e~~~~~~a~ey~~~~a~La~~l~G~ 239 (264)
..+-......++-+.+|-+||.+++.|. .. . ....+..-+++.....+|+...|+
T Consensus 419 ~~HH~~~~~~s~~a~IV~~AD~lsa~Rp-ga-r--~~s~~~~i~rl~~lE~ia~~~~gV 473 (535)
T PRK00106 419 ASHHGDVEPESVIAVIVAAADALSSARP-GA-R--NESMENYIKRLRDLEEIANSFDGV 473 (535)
T ss_pred HHhCCCCCCCChHHHHHHHHHHhccCCC-CC-C--cCCHHHHHHHHHHHHHHHhcCCcH
Confidence 0001111224677999999999999882 11 1 111222334444455666666554
No 19
>PRK12704 phosphodiesterase; Provisional
Probab=78.72 E-value=11 Score=38.15 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=26.0
Q ss_pred CCchhhhHHHHHHH---HHHcCCCCCHHHHHHHhhhcccc
Q psy8734 108 GTPYIEHPVAVAHI---LTHLGKVSNPVVIISALLHDTVE 144 (264)
Q Consensus 108 G~PYi~H~l~VA~i---L~~l~g~~D~~~liAALLHDvvE 144 (264)
+...+.|+++|+.+ ++...|+-......||||||+=.
T Consensus 333 ~qn~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK 372 (520)
T PRK12704 333 GQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGK 372 (520)
T ss_pred CCcHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCc
Confidence 55678899999876 44555642334678999999644
No 20
>PRK12705 hypothetical protein; Provisional
Probab=77.35 E-value=4 Score=41.09 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=27.0
Q ss_pred CCCchhhhHHHHHHHH---HHcCCCCCH-HHHHHHhhhcccc
Q psy8734 107 EGTPYIEHPVAVAHIL---THLGKVSNP-VVIISALLHDTVE 144 (264)
Q Consensus 107 sG~PYi~H~l~VA~iL---~~l~g~~D~-~~liAALLHDvvE 144 (264)
.|...+.|.+.||.+. +...|+ |+ ....||||||+=.
T Consensus 320 ygqnvl~HSl~VA~lA~~LA~~lGl-d~d~a~~AGLLHDIGK 360 (508)
T PRK12705 320 YGQNVLSHSLEVAHLAGIIAAEIGL-DPALAKRAGLLHDIGK 360 (508)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCc-CHHHHHHHHHHHHcCC
Confidence 3666789999999864 444463 54 4678999999765
No 21
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=76.63 E-value=6.7 Score=37.07 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=25.8
Q ss_pred CchhhhHHHHHHHH---HHcCCCCCHHHHHHHhhhccccC
Q psy8734 109 TPYIEHPVAVAHIL---THLGKVSNPVVIISALLHDTVED 145 (264)
Q Consensus 109 ~PYi~H~l~VA~iL---~~l~g~~D~~~liAALLHDvvED 145 (264)
...+.|.+.||.+. +...|.-+.+...||||||+=..
T Consensus 195 ~~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK~ 234 (342)
T PRK07152 195 EYRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITKE 234 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhcc
Confidence 34678999998764 44345434567899999997553
No 22
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=73.05 E-value=2.6 Score=41.37 Aligned_cols=65 Identities=18% Similarity=0.279 Sum_probs=39.8
Q ss_pred CCChhHHHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCC----CCH--------HHHHHHhhhccccC
Q psy8734 78 MHSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKV----SNP--------VVIISALLHDTVED 145 (264)
Q Consensus 78 ~~~~~~~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~----~D~--------~~liAALLHDvvED 145 (264)
.++.+..||++.-.++....+--. + +.-.=+.|+++|..+...++.. .+. .+.+|||||| +-+
T Consensus 23 LIdT~~FQRLRrIkQLG~a~lvyP---g-AnHTRFeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHD-IGH 97 (421)
T COG1078 23 LIDTPEFQRLRRIKQLGLAYLVYP---G-ANHTRFEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHD-IGH 97 (421)
T ss_pred HhCCHHHHHHHHhhhccceeEecC---C-CcccccchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHc-cCC
Confidence 356778888887777655433211 1 1223479999999886643210 111 3789999999 455
Q ss_pred CC
Q psy8734 146 TD 147 (264)
Q Consensus 146 t~ 147 (264)
++
T Consensus 98 gP 99 (421)
T COG1078 98 GP 99 (421)
T ss_pred Cc
Confidence 54
No 23
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=72.07 E-value=4.4 Score=35.65 Aligned_cols=46 Identities=24% Similarity=0.455 Sum_probs=0.0
Q ss_pred hhhHHHHHHH---HHHcCCCCCHH-HHHHHhhhccccCCC-CCHHHHHHHhC
Q psy8734 112 IEHPVAVAHI---LTHLGKVSNPV-VIISALLHDTVEDTD-TTFEEIEREFG 158 (264)
Q Consensus 112 i~H~l~VA~i---L~~l~g~~D~~-~liAALLHDvvEDt~-~t~eeL~~~FG 158 (264)
+.|+++|+.. |++..| .|.+ +-+||+|||.-.+-+ ...-.+...+|
T Consensus 19 ~~H~l~V~~~A~~LA~~y~-~d~~kA~~AgilHD~aK~~p~~~~~~~~~~~~ 69 (187)
T COG1713 19 FEHCLGVAETAIELAEAYG-LDPEKAYLAGILHDIAKELPEQKLLKIAKKYG 69 (187)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHHhC
No 24
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=70.74 E-value=9.6 Score=33.10 Aligned_cols=41 Identities=27% Similarity=0.483 Sum_probs=29.0
Q ss_pred hhccCCCCCCCCCch--hhhHHHHHHHHHHcCCCCCHHHHHHHhhhcc
Q psy8734 97 KHHFQRRKDPEGTPY--IEHPVAVAHILTHLGKVSNPVVIISALLHDT 142 (264)
Q Consensus 97 aH~gQ~rk~~sG~PY--i~H~l~VA~iL~~l~g~~D~~~liAALLHDv 142 (264)
.|.++-. +|+|- ..|.++.|... +.-| .|.+.++||||||+
T Consensus 18 ~~g~e~y---~ge~VTq~eHaLQ~AtlA-erdG-a~~~lVaaALLHDi 60 (186)
T COG4341 18 RHGDEGY---SGEPVTQLEHALQCATLA-ERDG-ADTALVAAALLHDI 60 (186)
T ss_pred Hcccccc---ccCcchhhhhHHHHhHHH-HhcC-CcHHHHHHHHHHhH
Confidence 4455543 36664 47999988554 4446 79999999999985
No 25
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B.
Probab=69.73 E-value=5.6 Score=33.80 Aligned_cols=98 Identities=31% Similarity=0.260 Sum_probs=48.6
Q ss_pred CCchhhhHHHHHHHH---HHcCC-CCCH-HHHHHHhhhccccCC--CCCHHH-H-HHHhCHHHHHHHHHhhcCCCCCHH-
Q psy8734 108 GTPYIEHPVAVAHIL---THLGK-VSNP-VVIISALLHDTVEDT--DTTFEE-I-EREFGPRVRSVVEELTDNKHMTRD- 177 (264)
Q Consensus 108 G~PYi~H~l~VA~iL---~~l~g-~~D~-~~liAALLHDvvEDt--~~t~ee-L-~~~FG~~Va~LV~gLTk~~~l~~~- 177 (264)
.++--.|...||.+. +...| ..|. .++..||+||+.|-- +++.-. + .+.+-..-...++.+... ++..
T Consensus 20 ~EsVAeHS~~vA~~a~~la~~~~~~~d~~k~~~~aL~HDl~E~~~GDi~~~~~~~~~~~~~~E~~a~~~l~~~--Lp~~l 97 (165)
T PF13023_consen 20 PESVAEHSWRVALIALLLAEEAGPDLDIEKVVKMALFHDLPEAITGDIPPPDGVDKEEKEEREEAAIEELFSL--LPEEL 97 (165)
T ss_dssp G-BHHHHHHHHHHHHHHHHHHHH-HC-HHHHHHHHHHTTTTHHHH----HHH-CCHHHHHHHHHHHHHHHCTT--SSCHH
T ss_pred CccHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHhhccchhhhcCCCCCcccchHHHHHHHHHHHHHHHHHH--hhhhH
Confidence 355668999988763 22222 1354 488889999999942 222211 1 112222223333333332 2211
Q ss_pred -HHHHHHHHHc-CCCCcchhHhHHHhHHhhhh
Q psy8734 178 -ERKRCQILHA-PHSSHEAKLVKLADKLHNLR 207 (264)
Q Consensus 178 -~r~~~q~e~l-r~~D~rvvLIKLADRL~NLR 207 (264)
..-.....-+ ....+.+.++|-+|+++-+-
T Consensus 98 ~~~~~~l~~E~e~~~s~ea~~vk~~D~l~~~l 129 (165)
T PF13023_consen 98 QEELKELWEEFEEGESPEAKLVKAADKLEPLL 129 (165)
T ss_dssp HHHHHHHHHHHHHT-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHhhhhhHHH
Confidence 1111111111 24688999999999998753
No 26
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=69.43 E-value=6.2 Score=27.85 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=23.3
Q ss_pred CchhhhHHHHHHHHH---HcCCCCCH-HHHHHHhhhcccc
Q psy8734 109 TPYIEHPVAVAHILT---HLGKVSNP-VVIISALLHDTVE 144 (264)
Q Consensus 109 ~PYi~H~l~VA~iL~---~l~g~~D~-~~liAALLHDvvE 144 (264)
.+.+.|...|+.... ...| .|. ....||||||+=.
T Consensus 3 ~~~~~H~~~v~~~a~~la~~~~-~~~~~l~~AalLHDiG~ 41 (80)
T TIGR00277 3 QNVLQHSLEVAKLAEALARELG-LDVELARRGALLHDIGK 41 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHccCC
Confidence 445678888887644 3334 355 4678999999644
No 27
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=67.25 E-value=4.9 Score=33.60 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=24.1
Q ss_pred chhhhHHHHHHHH---HHcCCCCCH-HHHHHHhhhcccc
Q psy8734 110 PYIEHPVAVAHIL---THLGKVSNP-VVIISALLHDTVE 144 (264)
Q Consensus 110 PYi~H~l~VA~iL---~~l~g~~D~-~~liAALLHDvvE 144 (264)
.-+.|++.||.+. +...| .|. ..-+||||||+=.
T Consensus 8 ~r~~Hsl~Va~~a~~lA~~~~-~d~e~a~~AGLLHDIGk 45 (158)
T TIGR00488 8 HRYQHCLGVGQTAKQLAEANK-LDSKKAEIAGAYHDLAK 45 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHhc
Confidence 3468999988764 44444 344 4779999999765
No 28
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=54.62 E-value=10 Score=32.09 Aligned_cols=92 Identities=23% Similarity=0.257 Sum_probs=50.1
Q ss_pred CchhhhHHHHHHHH---HHcCC----CCCH-HHHHHHhhhccccCCC-------CCHHHHHH-HhCHHHHHHHHHhhcCC
Q psy8734 109 TPYIEHPVAVAHIL---THLGK----VSNP-VVIISALLHDTVEDTD-------TTFEEIER-EFGPRVRSVVEELTDNK 172 (264)
Q Consensus 109 ~PYi~H~l~VA~iL---~~l~g----~~D~-~~liAALLHDvvEDt~-------~t~eeL~~-~FG~~Va~LV~gLTk~~ 172 (264)
...+.|.+.|+.+. +...| ..|. ...+||+|||+=.... ...+-+++ .|.++++.+|..-...
T Consensus 12 ~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~~~~~~~H~~~G~~iL~~~g~~~~i~~iI~~H~~~- 90 (164)
T TIGR00295 12 ESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRARTHGFEHFVKGAEILRKEGVDEKIVRIAERHFGA- 90 (164)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHhCC-
Confidence 45678999998763 33222 1344 4678999999865321 12233333 3567788887643221
Q ss_pred CCCHHHHHHHHHHHcC-----CCCcchhHhHHHhHHh
Q psy8734 173 HMTRDERKRCQILHAP-----HSSHEAKLVKLADKLH 204 (264)
Q Consensus 173 ~l~~~~r~~~q~e~lr-----~~D~rvvLIKLADRL~ 204 (264)
+.+..+. . -..+. ..+.-..+|-+||++.
T Consensus 91 g~p~~~~-~--~~~l~~~~~~p~t~ea~IV~~AD~l~ 124 (164)
T TIGR00295 91 GINAEEA-S--KLGLPPKDYMPETLEEKIVAHADNLI 124 (164)
T ss_pred CCchhhH-h--hcCCCcccCCCCCHHHHHHHHHHHhc
Confidence 1111100 0 00111 1345778999999996
No 29
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=48.01 E-value=31 Score=31.70 Aligned_cols=52 Identities=21% Similarity=0.320 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCCCCHHHH-HHHhhhcc
Q psy8734 87 IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVI-ISALLHDT 142 (264)
Q Consensus 87 i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~~D~~~l-iAALLHDv 142 (264)
|-+|+++.-..- +..+.+ ...|-+.|++++|+.+....| +++-+ .+||+||+
T Consensus 41 i~eA~~~L~~Lv-DeSDPD-~d~~~i~H~lQTAEaiR~d~~--~~dW~~LtGLiHDL 93 (253)
T PF05153_consen 41 IWEALELLNTLV-DESDPD-TDLPQIQHALQTAEAIRRDHP--DPDWMQLTGLIHDL 93 (253)
T ss_dssp HHHHHHHGGG----TT-TT---S-HHHHHHHHHHHHHHHST--T-HHHHHHHHHTTG
T ss_pred HHHHHHHHHHhc-cCccCC-CchhHHHHHHHHHHHHHHhCC--Ccchhhheehhccc
Confidence 445555533332 333333 356789999999999987644 56644 79999985
No 30
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=46.56 E-value=33 Score=33.85 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCC---chhhhHHHHHHHHHH---cCCCCCHHHHHHHhhhccccCCC
Q psy8734 83 AIMNIVKATDFASHKHHFQRRKDPEGT---PYIEHPVAVAHILTH---LGKVSNPVVIISALLHDTVEDTD 147 (264)
Q Consensus 83 ~~~~i~~Al~~A~~aH~gQ~rk~~sG~---PYi~H~l~VA~iL~~---l~g~~D~~~liAALLHDvvEDt~ 147 (264)
|..+|--.-.|-.-.+..|.-....|. .-+.|.++|+.+... ..|....-+.+|||+|| +-+.|
T Consensus 40 DrdRIi~S~afRRL~~KtQVf~~~~~Df~~tRltHslev~~~~r~~~~~~~~~~~~~~~~~l~hd-~GhpP 109 (428)
T PRK03007 40 DRARVLHSAALRRLADKTQVVGPREGDTPRTRLTHSLEVAQIGRGIAAGLGCDPDLVDLAGLAHD-IGHPP 109 (428)
T ss_pred hHHHHhCCHHHHhhhccceeccCCCCCccccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhc-CCCCC
Confidence 446666666676667777743221122 236899999997543 23432223668999999 45554
No 31
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=37.60 E-value=2e+02 Score=25.99 Aligned_cols=94 Identities=22% Similarity=0.189 Sum_probs=45.6
Q ss_pred chhhhHHHHHHHHHH-------cCCCCCHH-HHHHHhhhccccCC------CCC--HHHHHHHhCHHHHHHHHHhh--cC
Q psy8734 110 PYIEHPVAVAHILTH-------LGKVSNPV-VIISALLHDTVEDT------DTT--FEEIEREFGPRVRSVVEELT--DN 171 (264)
Q Consensus 110 PYi~H~l~VA~iL~~-------l~g~~D~~-~liAALLHDvvEDt------~~t--~eeL~~~FG~~Va~LV~gLT--k~ 171 (264)
.-..|...|+.+..- .++..|.. ...-|+.||..|-. |+. -.++++.|++-=..+.+..- .+
T Consensus 29 nVA~HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~E~FtGDI~TPVKy~tPelr~~~~~VE~~m~~~~i~~~i 108 (215)
T PF12917_consen 29 NVAEHSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYPEIFTGDIKTPVKYATPELREMLAQVEEEMTENFIKKEI 108 (215)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGGGGTS----S-SSSS-HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccHHHHcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 445799998886432 22234553 45889999999953 111 12344444331111222211 12
Q ss_pred CCCCHHHHHHHHHHHcCC---CCcchhHhHHHhHHhhhh
Q psy8734 172 KHMTRDERKRCQILHAPH---SSHEAKLVKLADKLHNLR 207 (264)
Q Consensus 172 ~~l~~~~r~~~q~e~lr~---~D~rvvLIKLADRL~NLR 207 (264)
+.. +.. .+-..+.. ......+||.||.++-+-
T Consensus 109 P~e-~q~---~Y~~~l~E~KDdt~EG~Iv~~ADkidal~ 143 (215)
T PF12917_consen 109 PEE-FQE---AYRRRLKEGKDDTLEGQIVKAADKIDALY 143 (215)
T ss_dssp -GG-GHH---HHHHHHS---SSSHHHHHHHHHHHHHHHH
T ss_pred CHH-HHH---HHHHHhhcCCcccHHHHHHHHHHHHHHHH
Confidence 211 111 11112221 347899999999999763
No 32
>KOG1573|consensus
Probab=37.27 E-value=76 Score=27.70 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=23.1
Q ss_pred CCchhhhHHHHHHHHHHcCCCCCHHH-HHHHhhhcc
Q psy8734 108 GTPYIEHPVAVAHILTHLGKVSNPVV-IISALLHDT 142 (264)
Q Consensus 108 G~PYi~H~l~VA~iL~~l~g~~D~~~-liAALLHDv 142 (264)
.+|-+.|+++.|+.+.... -|.+- =.+||+||+
T Consensus 94 Depni~Ha~QtAE~iR~~~--Pd~dWlHLtaLiHDL 127 (204)
T KOG1573|consen 94 DEPNIQHALQTAEAIRKDY--PDEDWLHLTALIHDL 127 (204)
T ss_pred chHHHHHHHHHHHHHHHhC--CCccHHHHHHHHHHH
Confidence 4577888888888887643 45553 367888874
No 33
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=32.80 E-value=73 Score=30.50 Aligned_cols=62 Identities=29% Similarity=0.320 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCC---chhhhHHHHHHHHHHc---CCCCCHH-HHHHHhhhccccCCCC
Q psy8734 85 MNIVKATDFASHKHHFQRRKDPEGT---PYIEHPVAVAHILTHL---GKVSNPV-VIISALLHDTVEDTDT 148 (264)
Q Consensus 85 ~~i~~Al~~A~~aH~gQ~rk~~sG~---PYi~H~l~VA~iL~~l---~g~~D~~-~liAALLHDvvEDt~~ 148 (264)
.+|-.--.|-.-.+..|.-..+.+. .=+.|.++|+.+.... .+ .+.+ +-+|||+|| +-+.|.
T Consensus 34 drii~s~~frRL~~ktQv~~~~~~dh~rtR~~Hsl~V~~iar~~~~~l~-~~~~l~~aaaL~HD-iGh~Pf 102 (336)
T PRK01286 34 DRIIHSKAFRRLKHKTQVFINPEGDHYRTRLTHTLEVAQIARTIARALR-LNEDLTEAIALGHD-LGHTPF 102 (336)
T ss_pred HHHhCCHHHHhhhccceecccCCCcccccHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHhc-CCCCCC
Confidence 4444444443344444532221122 3478999999974432 24 2443 457999999 566653
No 34
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=32.29 E-value=47 Score=31.44 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=23.7
Q ss_pred hhhhHHHHHHHHHHcC---CCCCHH-HHHHHhhhccc
Q psy8734 111 YIEHPVAVAHILTHLG---KVSNPV-VIISALLHDTV 143 (264)
Q Consensus 111 Yi~H~l~VA~iL~~l~---g~~D~~-~liAALLHDvv 143 (264)
.+.|.+.|+.++..+. ...|.+ .+++|+|||+=
T Consensus 160 LleHtl~v~~~~~~l~~~y~~~n~dll~agalLHDiG 196 (314)
T PRK13480 160 LAYHVVSMLRLAKSICDLYPSLNKDLLYAGIILHDLG 196 (314)
T ss_pred HHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhh
Confidence 5789999998865432 124666 67889999964
No 35
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=31.83 E-value=28 Score=34.40 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCC---CchhhhHHHHHHHHHHcC----C---------CCCHH-HHHHHhhhccccC
Q psy8734 83 AIMNIVKATDFASHKHHFQRRKDPEG---TPYIEHPVAVAHILTHLG----K---------VSNPV-VIISALLHDTVED 145 (264)
Q Consensus 83 ~~~~i~~Al~~A~~aH~gQ~rk~~sG---~PYi~H~l~VA~iL~~l~----g---------~~D~~-~liAALLHDvvED 145 (264)
|..+|-..-.|=.-.+..|.-....+ ..=++|.++|+.+..... + ..+.+ .-+|||+|| +-+
T Consensus 28 D~dRii~s~~frRL~~ktQV~~~~~~d~~~tRltHslev~~i~r~~~~~~~~~~~~~~~~~~~~~~l~~a~~L~HD-iGh 106 (432)
T PRK05318 28 DRARILHSAAFRRLQAKTQVLGVGENDFYRTRLTHSLEVAQIGTGIVAQLKKEKQPELKPLLPSDSLIESLCLAHD-IGH 106 (432)
T ss_pred HHHHHhCCHHHhhhcccceeCCCCCCCCCcChhHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHhc-CCC
Confidence 44556555555555555663211011 123689999998754311 0 11344 348999999 455
Q ss_pred CC
Q psy8734 146 TD 147 (264)
Q Consensus 146 t~ 147 (264)
.|
T Consensus 107 pP 108 (432)
T PRK05318 107 PP 108 (432)
T ss_pred CC
Confidence 55
No 36
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=29.86 E-value=41 Score=32.58 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCC---CCchhhhHHHHHHHHHHc---CCC----------CCH-HHHHHHhhhccccCC
Q psy8734 84 IMNIVKATDFASHKHHFQRRKDPE---GTPYIEHPVAVAHILTHL---GKV----------SNP-VVIISALLHDTVEDT 146 (264)
Q Consensus 84 ~~~i~~Al~~A~~aH~gQ~rk~~s---G~PYi~H~l~VA~iL~~l---~g~----------~D~-~~liAALLHDvvEDt 146 (264)
..+|-....|-.-.+..|.-.... -..=++|.++|+.+...+ .+. .+. -+.+|||+|| +-+.
T Consensus 9 ~dRii~s~~frRL~~ktQv~~~~~~d~~~tRltHslev~~i~r~~~~~l~~~~~~~~~~~~~~~~l~~~a~L~HD-iGhp 87 (381)
T TIGR01353 9 YDRIIHSSAFRRLQDKTQVFPLAENDFVRTRLTHSLEVAQVGRSIANLIGLRYDLELEELGPFERLAETACLAHD-IGNP 87 (381)
T ss_pred HHHHhCCHHHhhhccCceeCcCCCCCCCcCHhHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhc-CCCC
Confidence 344544445544445555422100 123478999999975432 121 022 2568999999 4555
Q ss_pred C
Q psy8734 147 D 147 (264)
Q Consensus 147 ~ 147 (264)
|
T Consensus 88 P 88 (381)
T TIGR01353 88 P 88 (381)
T ss_pred C
Confidence 5
No 37
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=27.67 E-value=1.9e+02 Score=25.38 Aligned_cols=66 Identities=15% Similarity=0.121 Sum_probs=44.0
Q ss_pred CchhhhHHHHHHH---HHHcCCCCCHH-HHHHHhhhccccC-C--------CCCHHHHHH-HhCHHHHHHHHHhhcCCCC
Q psy8734 109 TPYIEHPVAVAHI---LTHLGKVSNPV-VIISALLHDTVED-T--------DTTFEEIER-EFGPRVRSVVEELTDNKHM 174 (264)
Q Consensus 109 ~PYi~H~l~VA~i---L~~l~g~~D~~-~liAALLHDvvED-t--------~~t~eeL~~-~FG~~Va~LV~gLTk~~~l 174 (264)
+..+-||+.++.. ++..+| .|++ --.+++|||.=-+ | -.+.+-|++ ...++|.+.|.+-.....-
T Consensus 46 e~L~kHcla~eavMr~lARe~g-EDEEkw~~~GlLHD~DYe~tqgdpEeHgl~g~eiL~~edv~eeil~ai~~H~~~~~~ 124 (212)
T COG2316 46 ESLQKHCLAVEAVMRWLAREWG-EDEEKWAVTGLLHDFDYELTQGDPEEHGLWGVEILREEDVSEEILDAIMGHAAYTGT 124 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHhhhhhccHHhhcCChhhcCccceehHhhcCCCHHHHHHHHHhhhhhcC
Confidence 5678899987665 556677 5766 4578999986322 1 133444544 5788899888887766554
Q ss_pred C
Q psy8734 175 T 175 (264)
Q Consensus 175 ~ 175 (264)
+
T Consensus 125 ~ 125 (212)
T COG2316 125 P 125 (212)
T ss_pred C
Confidence 4
No 38
>PRK14758 hypothetical protein; Provisional
Probab=26.17 E-value=71 Score=19.36 Aligned_cols=14 Identities=36% Similarity=0.626 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHH
Q psy8734 6 SLLIVLIVNAVVSL 19 (264)
Q Consensus 6 ~~~~~~~~~~~~~~ 19 (264)
-+|+++|+.+++..
T Consensus 9 liLivlIlCalia~ 22 (27)
T PRK14758 9 FILIILILCALIAA 22 (27)
T ss_pred HHHHHHHHHHHHHH
Confidence 46889999888753
No 39
>COG4339 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.46 E-value=1.1e+02 Score=26.88 Aligned_cols=62 Identities=19% Similarity=0.173 Sum_probs=33.3
Q ss_pred HHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCCCCHH-HHHHHhhhccccCCCCCHHHHH
Q psy8734 90 ATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPV-VIISALLHDTVEDTDTTFEEIE 154 (264)
Q Consensus 90 Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~~D~~-~liAALLHDvvEDt~~t~eeL~ 154 (264)
++.-...++.+.-|.+. .--.|.-+++....+..+. .|++ +-.|+|.||+|-||.-.-+|-+
T Consensus 24 ~f~~L~aaY~~~dRHYH-~l~HI~a~L~~~~~~r~la--~dp~~VElA~WfHD~iYDtqaqDNEa~ 86 (208)
T COG4339 24 VFTHLIAAYSSPDRHYH-TLKHISAVLQTIQTLRTLA--QDPPGVELAAWFHDVIYDTQAQDNEAK 86 (208)
T ss_pred HHHHHHHHhcCCccchh-hHHHHHHHHHHHHHHHHHh--cCCchhHHHHHHHHHHhhhhccccHHH
Confidence 34444455555544331 1123444444444444433 3444 4478999999999975544443
No 40
>KOG0742|consensus
Probab=22.20 E-value=4.4e+02 Score=26.73 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCcCCccccCCCcccccccc
Q psy8734 3 MIRSLLIVLIVNAVVSLICAAPYKALPKLESGPKGLPLMYVP 44 (264)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (264)
|-++..+..|..+..|..-.-. + +...|||++|-++..
T Consensus 1 Ma~kc~a~~i~a~~~S~~~~~n-k---a~ad~~f~~~~fs~s 38 (630)
T KOG0742|consen 1 MAQKCAAGSISALAMSWLFGIN-K---AYADSRFGFPGFSAS 38 (630)
T ss_pred CchhHHHHHHHHHHHHHHhccc-h---hhccCCCCCCCCCCC
Confidence 4456666666666665443222 2 456678987777654
Done!