Query psy8734
Match_columns 264
No_of_seqs 133 out of 1212
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 17:51:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8734.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8734hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vj7_A Bifunctional RELA/SPOT; 100.0 1.5E-45 5E-50 350.5 15.1 179 77-262 18-202 (393)
2 3nqw_A CG11900; stringent resp 100.0 2.2E-44 7.5E-49 309.8 18.6 177 79-255 1-177 (179)
3 3nr1_A HD domain-containing pr 100.0 1.1E-42 3.7E-47 299.1 19.8 174 82-255 2-175 (178)
4 2qgs_A Protein Se1688; alpha-h 92.9 0.58 2E-05 40.2 9.5 55 85-145 5-64 (225)
5 2paq_A 5'-deoxynucleotidase YF 92.8 0.28 9.6E-06 41.9 7.3 99 108-206 29-144 (201)
6 3dto_A BH2835 protein; all alp 91.7 0.9 3.1E-05 39.3 9.3 55 85-145 5-63 (223)
7 3djb_A Hydrolase, HD family; a 91.7 0.92 3.1E-05 39.2 9.3 112 84-208 4-129 (223)
8 3b57_A LIN1889 protein; Q92AN1 88.2 2.3 7.9E-05 35.9 8.8 57 84-146 4-64 (209)
9 2pjq_A Uncharacterized protein 87.3 1.4 5E-05 37.9 7.1 54 85-144 10-67 (231)
10 3kh1_A Predicted metal-depende 80.8 17 0.00059 30.8 10.9 60 85-144 8-79 (200)
11 1xx7_A Oxetanocin-like protein 73.7 5.4 0.00019 33.4 5.7 36 108-144 35-79 (184)
12 2pq7_A Predicted HD superfamil 73.4 4.9 0.00017 33.8 5.4 51 86-142 14-68 (220)
13 2o08_A BH1327 protein; putativ 72.8 2 6.8E-05 35.5 2.7 35 110-145 18-56 (188)
14 3ccg_A HD superfamily hydrolas 72.6 2 6.9E-05 35.5 2.7 34 111-145 20-57 (190)
15 2ibn_A Inositol oxygenase; red 71.1 4.4 0.00015 35.8 4.6 52 87-142 38-90 (250)
16 3gw7_A Uncharacterized protein 71.1 2.8 9.7E-05 36.6 3.4 34 111-145 26-63 (239)
17 2gz4_A Hypothetical protein AT 70.7 5.7 0.00019 34.2 5.2 37 109-145 54-90 (207)
18 2ogi_A Hypothetical protein SA 70.2 2.5 8.4E-05 35.3 2.7 35 110-145 26-64 (196)
19 3mzo_A LIN2634 protein; HD-dom 70.0 17 0.00058 31.2 8.1 38 108-145 28-73 (216)
20 2cqz_A 177AA long hypothetical 68.6 4.4 0.00015 33.5 3.9 36 108-144 30-74 (177)
21 2dqb_A Deoxyguanosinetriphosph 58.3 15 0.00053 34.1 6.0 64 83-148 45-115 (376)
22 2hek_A Hypothetical protein; p 54.8 8.1 0.00028 35.8 3.4 36 109-144 49-88 (371)
23 1ynb_A Hypothetical protein AF 44.0 20 0.00069 29.7 3.9 35 109-144 37-78 (173)
24 2q14_A Phosphohydrolase; BT420 42.2 6.4 0.00022 37.1 0.6 59 83-142 23-98 (410)
25 3tm8_A BD1817, uncharacterized 39.2 21 0.00071 32.1 3.5 35 109-143 164-206 (328)
26 3irh_A HD domain protein; phos 30.5 13 0.00044 35.9 0.6 36 111-147 87-140 (480)
27 3hc1_A Uncharacterized HDOD do 28.7 43 0.0015 29.4 3.7 34 109-142 117-154 (305)
28 4dmb_A HD domain-containing pr 28.3 62 0.0021 27.4 4.5 38 108-145 43-82 (204)
29 2huo_A Inositol oxygenase; pro 27.8 74 0.0025 28.6 5.0 33 108-142 96-129 (289)
30 3u1n_A SAM domain and HD domai 25.7 17 0.0006 35.4 0.6 65 82-149 32-116 (528)
31 1vqr_A Hypothetical protein CJ 22.2 53 0.0018 28.6 3.0 32 111-142 125-160 (297)
32 2pgs_A Putative deoxyguanosine 21.7 23 0.0008 33.7 0.6 66 83-149 32-117 (451)
33 3m1t_A Putative phosphohydrola 21.6 47 0.0016 28.7 2.5 33 109-142 104-140 (275)
No 1
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=100.00 E-value=1.5e-45 Score=350.54 Aligned_cols=179 Identities=31% Similarity=0.438 Sum_probs=151.1
Q ss_pred CCCChhHHHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCCCCHHHHHHHhhhccccCCCCCHHHHHHH
Q psy8734 77 GMHSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIERE 156 (264)
Q Consensus 77 ~~~~~~~~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~~D~~~liAALLHDvvEDt~~t~eeL~~~ 156 (264)
.|+++.+...+.+|+.||.++|.||+|++ |+||+.||++||.+|+++ | +|.++++||||||++|||++|.++|++.
T Consensus 18 ~~~~~~~~~~l~~A~~~A~~aH~gQ~rks--GePYi~Hpl~VA~iLa~l-~-~D~~~i~AALLHDvvEDt~~t~e~I~~~ 93 (393)
T 1vj7_A 18 KYMNETDAAFVKKALDYATAAHFYQVRKS--GEPYIVHPIQVAGILADL-H-LDAVTVACGFLHDVVEDTDITLDNIEFD 93 (393)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTTCBCTT--SCBTTHHHHHHHHHHHHT-T-CCHHHHHHHHHTTHHHHSSCCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHhccCcCCC--CCcHHHHHHHHHHHHHHh-c-CCHHHHHHHHhhhHHhcCCCCHHHHHHH
Confidence 67899999999999999999999999985 999999999999999986 4 7999999999999999999999999999
Q ss_pred hCHHHHHHHHHhhcCCCCCHHHHHHHHHHHcCC------CCcchhHhHHHhHHhhhhhhhccCCcchhHHHHHHHHHHHH
Q psy8734 157 FGPRVRSVVEELTDNKHMTRDERKRCQILHAPH------SSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWAR 230 (264)
Q Consensus 157 FG~~Va~LV~gLTk~~~l~~~~r~~~q~e~lr~------~D~rvvLIKLADRL~NLR~l~~~~~e~~~~~~a~ey~~~~a 230 (264)
||++|+.+|+|||+++++++..+...|++++|+ .|+||++||||||+||||++...++++|.+ .++|++++|+
T Consensus 94 FG~~Va~lV~gvTk~~~~~~~~~~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~~~ek~~~-iA~Etl~iya 172 (393)
T 1vj7_A 94 FGKDVRDIVDGVTKLGKVEYKSHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQER-ISRETMEIYA 172 (393)
T ss_dssp HCHHHHHHHHHHHHHC--------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHH-HHHHHHHTHH
T ss_pred hCHHHHHHHHHHHhcccCCcccHHHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhhCChHHHHH-HHHHHHHHHH
Confidence 999999999999999999876666678999875 799999999999999999999999888764 5899999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhcCcccccc
Q psy8734 231 DVVQGLRGTNAPIEAELDALFAKYCTPREGRE 262 (264)
Q Consensus 231 ~La~~l~G~~~~lk~eLedl~~r~l~p~~y~~ 262 (264)
|||+|| |+ +++||||||||||||+|+.|++
T Consensus 173 PLA~rL-Gi-~~ik~ELEdl~f~~l~p~~y~~ 202 (393)
T 1vj7_A 173 PLAHRL-GI-SRIKWELEDLAFRYLNETEFYK 202 (393)
T ss_dssp HHHHHT-TC-HHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHhhc-Ch-hHHHHHHHHHHhcccchhHHHH
Confidence 999999 99 9999999999999999999974
No 2
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=2.2e-44 Score=309.84 Aligned_cols=177 Identities=47% Similarity=0.777 Sum_probs=165.2
Q ss_pred CChhHHHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCCCCHHHHHHHhhhccccCCCCCHHHHHHHhC
Q psy8734 79 HSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIEREFG 158 (264)
Q Consensus 79 ~~~~~~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~~D~~~liAALLHDvvEDt~~t~eeL~~~FG 158 (264)
|+..+.+++.+|+.||.++|.||+|++++|.||+.|+++||.+|+...|..|.++++||||||++|||.+|.++|++.||
T Consensus 1 ~~~~d~~~l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDvvEDt~~t~e~i~~~FG 80 (179)
T 3nqw_A 1 MATYPSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTDASFEDVEKLFG 80 (179)
T ss_dssp -CCCCCHHHHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTHHHHSSCCHHHHHHHHC
T ss_pred CCcccHHHHHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCCCCHHHHHHHHC
Confidence 45567789999999999999999998556999999999999999944554499999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHcCCCCcchhHhHHHhHHhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHhcC
Q psy8734 159 PRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRG 238 (264)
Q Consensus 159 ~~Va~LV~gLTk~~~l~~~~r~~~q~e~lr~~D~rvvLIKLADRL~NLR~l~~~~~e~~~~~~a~ey~~~~a~La~~l~G 238 (264)
++|+.+|+|||+++.+++.++...|++++++.|+||++||||||+||||++...+++.|+.+++++|++|+.++++.|+|
T Consensus 81 ~~Va~lV~gvtk~~~~~~~~~~~~q~e~~r~~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~~v~~~l~~ 160 (179)
T 3nqw_A 81 PDVCGLVREVTDDKSLEKQERKRLQIENAAKSSCRAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYFVWAKKVVDNLRG 160 (179)
T ss_dssp HHHHHHHHHTCCCTTSCHHHHHHHHHHSSTTSCHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999888888899999999999999999999999999999999999989999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhc
Q psy8734 239 TNAPIEAELDALFAKYC 255 (264)
Q Consensus 239 ~~~~lk~eLedl~~r~l 255 (264)
.|+.|..+|++++.+|.
T Consensus 161 ~n~~l~~~~~~~~~~~~ 177 (179)
T 3nqw_A 161 TNANLELKLDEIFRQRG 177 (179)
T ss_dssp SCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 99999999999999874
No 3
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.1e-42 Score=299.12 Aligned_cols=174 Identities=56% Similarity=0.885 Sum_probs=162.9
Q ss_pred hHHHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCCCCHHHHHHHhhhccccCCCCCHHHHHHHhCHHH
Q psy8734 82 DAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIEREFGPRV 161 (264)
Q Consensus 82 ~~~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~~D~~~liAALLHDvvEDt~~t~eeL~~~FG~~V 161 (264)
.+.+++.+|+.||.++|.||+|++++|.||+.|+++||.+|...+|..|.++++||||||++|||.+|.++|++.||++|
T Consensus 2 ~d~~~l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDvvEDt~~t~e~i~~~FG~~V 81 (178)
T 3nr1_A 2 SEAAQLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDTTLDEVELHFGAQV 81 (178)
T ss_dssp CHHHHHHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTHHHHSSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCCCCHHHHHHHHCHHH
Confidence 46789999999999999999998656999999999999999644564599999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHcCCCCcchhHhHHHhHHhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHhcCCCH
Q psy8734 162 RSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNA 241 (264)
Q Consensus 162 a~LV~gLTk~~~l~~~~r~~~q~e~lr~~D~rvvLIKLADRL~NLR~l~~~~~e~~~~~~a~ey~~~~a~La~~l~G~~~ 241 (264)
+.+|+|||+++.+++.++...|+++++..|+||++||||||+||||++...+++.|+.++.++|+.|+..+++.|+|.|+
T Consensus 82 a~lV~gvTk~~~~~~~~~~~~q~e~~~~~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~~v~~~l~~~~~ 161 (178)
T 3nr1_A 82 RRLVEEVTDDKTLPKLERKRLQVEQAPHSSPGAKLVKLADKLYNLRDLNRCTPEGWSEHRVQEYFEWAAQVVKGLQGTNR 161 (178)
T ss_dssp HHHHHHTCCCTTSCHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHCCCTTCCHHHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhhCCccccCHHHHHHHHHHHHHHHHHhccCCH
Confidence 99999999999999888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q psy8734 242 PIEAELDALFAKYC 255 (264)
Q Consensus 242 ~lk~eLedl~~r~l 255 (264)
.|...|++++.+..
T Consensus 162 ~l~~~~~~~~~~~~ 175 (178)
T 3nr1_A 162 QLEEALKHLFKQRG 175 (178)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999988653
No 4
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=92.86 E-value=0.58 Score=40.21 Aligned_cols=55 Identities=27% Similarity=0.345 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHH----HHcCCCCCHH-HHHHHhhhccccC
Q psy8734 85 MNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHIL----THLGKVSNPV-VIISALLHDTVED 145 (264)
Q Consensus 85 ~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL----~~l~g~~D~~-~liAALLHDvvED 145 (264)
..+.++.++......+.. ...-+.|.++|+... +...| .|.+ ...||||||+...
T Consensus 5 ~li~~~~~~v~~~~~~~~-----~~H~~~H~~rV~~~a~~i~a~~~~-~d~~~l~lAAlLHDigk~ 64 (225)
T 2qgs_A 5 MKIKKAYEYMKSFHQHDT-----TGHDIAHVERVYNNACYIAKRENI-TDTLVIELSSLLHDTVDS 64 (225)
T ss_dssp HHHHHHHHHHHHHTTTCS-----SCHHHHHHHHHHHHHHHHHHHTTC-SCCHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHhcCC-----CccCHHHHHHHHHHHHHHHhhccC-CCHHHHHHHHHHHcCCCC
Confidence 577888888877766431 234579999999874 33234 3544 6799999999874
No 5
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=92.78 E-value=0.28 Score=41.90 Aligned_cols=99 Identities=24% Similarity=0.196 Sum_probs=50.9
Q ss_pred CCchhhhHHHHHHHHH-------HcCC-CCCHH-HHHHHhhhcccc----CCCCCH----HHHHHHhCHHHHHHHHHhhc
Q psy8734 108 GTPYIEHPVAVAHILT-------HLGK-VSNPV-VIISALLHDTVE----DTDTTF----EEIEREFGPRVRSVVEELTD 170 (264)
Q Consensus 108 G~PYi~H~l~VA~iL~-------~l~g-~~D~~-~liAALLHDvvE----Dt~~t~----eeL~~~FG~~Va~LV~gLTk 170 (264)
+++-..|.+.||.+.. +..| -.|.+ ++.+|||||+.| |.+... .++.+.+++.=...+..+..
T Consensus 29 ~EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~~GDi~~p~k~~~~~~~~~~~~~E~~~~~~i~~ 108 (201)
T 2paq_A 29 TENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQKLVD 108 (201)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHHCCCCCC---------CTHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhcccccccCCCCCchHhhhchHHHHHhcccHHHHHHHHHH
Confidence 5677789999997633 2221 24654 778899999988 321111 23333333322223333332
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcchhHhHHHhHHhhh
Q psy8734 171 NKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNL 206 (264)
Q Consensus 171 ~~~l~~~~r~~~q~e~lr~~D~rvvLIKLADRL~NL 206 (264)
.-.......-...........+.+++||-||+++-+
T Consensus 109 ~Lp~~~~~e~~~l~~e~e~~t~ea~lvk~aD~l~a~ 144 (201)
T 2paq_A 109 MVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAY 144 (201)
T ss_dssp TSCGGGHHHHHHHHTTTSCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Confidence 211111111111111123356789999999999864
No 6
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=91.73 E-value=0.9 Score=39.34 Aligned_cols=55 Identities=20% Similarity=0.169 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHH---cCCCCCHH-HHHHHhhhccccC
Q psy8734 85 MNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTH---LGKVSNPV-VIISALLHDTVED 145 (264)
Q Consensus 85 ~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~---l~g~~D~~-~liAALLHDvvED 145 (264)
..+.++.+|+.+.+.+.. +..-+.|..+|+..... ..| .|.+ ..+||||||+...
T Consensus 5 ~~i~~~~~~v~~~l~~~~-----~~H~~~H~~rV~~~a~~ia~~~~-~d~~~l~~AalLHDig~~ 63 (223)
T 3dto_A 5 AILQSAEAWVKKQLMDEY-----SGHDWYHIRRVTLMAKAIGEQEK-VDVFVVQIAALFHDLIDD 63 (223)
T ss_dssp HHHHHHHHHHHHTTTTC---------CHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHSTTC-
T ss_pred HHHHHHHHHHHHHhhcCC-----CCCcHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhhcccc
Confidence 568889999988876542 33458899998875432 224 4665 6699999999853
No 7
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=91.68 E-value=0.92 Score=39.24 Aligned_cols=112 Identities=22% Similarity=0.195 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHc---CCCCCHH-HHHHHhhhccccCCCC-----CHH---
Q psy8734 84 IMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHL---GKVSNPV-VIISALLHDTVEDTDT-----TFE--- 151 (264)
Q Consensus 84 ~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l---~g~~D~~-~liAALLHDvvEDt~~-----t~e--- 151 (264)
...+.++.+|+.+.+.+.. +..-+.|..+|+.....+ .| .|.+ ..+||||||+...... ..+
T Consensus 4 ~~~i~~~~~~v~~~l~~~~-----~~H~~~H~~rV~~~a~~ia~~~~-~d~~~l~~AAlLHDig~~k~~~h~~~ga~~a~ 77 (223)
T 3djb_A 4 QEKIEKTITFVKHILEKDA-----SGHDWYHIRRVHKMAISLSEQEG-GNRFIIEMAALLHDVADEKLNESEEAGMKKVS 77 (223)
T ss_dssp HHHHHHHHHHHHHHTTSSS-----CTTTHHHHHHHHHHHHHHHTTTC-SCHHHHHHHHTTHHHHC--CCSSSTTTHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCC-----CcCcHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhhccccccCCcHHHHHHHHH
Confidence 3578899999988877552 334589999998865432 23 4665 6699999999863221 111
Q ss_pred HHHHH--hCHHHHHHHHHhhcCCCCCHHHHHHHHHHHcCCCCcchhHhHHHhHHhhhhh
Q psy8734 152 EIERE--FGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNLRD 208 (264)
Q Consensus 152 eL~~~--FG~~Va~LV~gLTk~~~l~~~~r~~~q~e~lr~~D~rvvLIKLADRL~NLR~ 208 (264)
++-.. |+++....|..+-.....+.... . ...++.+.+|.-||||+.|-.
T Consensus 78 ~~L~~~g~~~~~i~~V~~~I~~Hs~~~~~~-~------~p~tlea~iV~dADrLDalGa 129 (223)
T 3djb_A 78 DWLEELHVEEEESKHVLHIIANMSYKGGHG-G------KVESIEGKLVQDADRLDALGA 129 (223)
T ss_dssp HHHHHTCCCHHHHHHHHHHTTCCC------------------HHHHHHHHHHHTTTSSH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHhCCccCCC-C------CCCCHHHHHHHhHHHHHHHHh
Confidence 22222 44544444433333222110000 0 023567899999999997643
No 8
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=88.20 E-value=2.3 Score=35.86 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHc---CCCCCHH-HHHHHhhhccccCC
Q psy8734 84 IMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHL---GKVSNPV-VIISALLHDTVEDT 146 (264)
Q Consensus 84 ~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l---~g~~D~~-~liAALLHDvvEDt 146 (264)
.+.+.++..+......+.. ...-+.|..+|+.....+ .| .|.+ ..+||||||+....
T Consensus 4 ~~li~~~~~~v~~~~~~~~-----~~H~~~H~~rV~~~a~~ia~~~~-~d~~~v~~AAlLHDig~~~ 64 (209)
T 3b57_A 4 EEIILSAKNWMHSHFENET-----TGHDWSHIKRVWKLSKEIQSKEG-GDLFTIELAALFHDYSDIK 64 (209)
T ss_dssp HHHHHHHHHHHHTTC-----------CCHHHHHHHHHHHHHHHHHHC-SCHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHHHHHHhcCC-----CCcCHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhccCccc
Confidence 3567777888766655321 233488999998875332 23 4765 56999999997653
No 9
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=87.28 E-value=1.4 Score=37.87 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHc---CCCCCHH-HHHHHhhhcccc
Q psy8734 85 MNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHL---GKVSNPV-VIISALLHDTVE 144 (264)
Q Consensus 85 ~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l---~g~~D~~-~liAALLHDvvE 144 (264)
..+.++..+......+.. ...-+.|..+|+.....+ .| .|.+ ..+||||||+..
T Consensus 10 ~~i~~~~~~v~~~~~~~~-----~~H~~~H~~rV~~~a~~ia~~~~-~d~~ll~lAAlLHDigk 67 (231)
T 2pjq_A 10 TQLTAIQTYALQKLAHDH-----SGHGRDHLQRVNRLARRLAKDEG-ANLNLTLAAAWLHDVID 67 (231)
T ss_dssp HHHHHHHHHHHTSSTTCC-----SSCSHHHHHHHHHHHHHHHHHHT-CCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccC-----CCcCHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHcCCc
Confidence 457777777766655321 233488999998865332 23 4666 569999999975
No 10
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=80.75 E-value=17 Score=30.81 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhhc--cCCCCC-----CCCCchhhhHHHHHHHHH---HcCC-CCCH-HHHHHHhhhcccc
Q psy8734 85 MNIVKATDFASHKHH--FQRRKD-----PEGTPYIEHPVAVAHILT---HLGK-VSNP-VVIISALLHDTVE 144 (264)
Q Consensus 85 ~~i~~Al~~A~~aH~--gQ~rk~-----~sG~PYi~H~l~VA~iL~---~l~g-~~D~-~~liAALLHDvvE 144 (264)
.++.+-+.|-...+. .+.|-+ .-.++-..|...||.+.. +..+ -.|. -++..||+||+.|
T Consensus 8 ~~l~~~~~Fl~~~~~LK~i~R~~~~~~~~r~EsVAeHS~~vAliA~~la~~~~~~vd~~r~~~maL~HDl~E 79 (200)
T 3kh1_A 8 SRLAAQMSFVVEIDKLKTILRQTLLTDSSRRENDAEHSWHIATMAFLLAEYADEAVQIGRVARMLLIHDIVE 79 (200)
T ss_dssp HHHHHHHHHHHHGGGGGGCEEEEECTTSSSEEEHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHhhCcCCcCCCcCCCCCCccHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHhcChHH
Confidence 356777777766654 222211 012345679999998743 3222 1465 5788999999998
No 11
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=73.72 E-value=5.4 Score=33.43 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=26.3
Q ss_pred CCchhhhHHHHHHH---HHHc-----CCCCCHH-HHHHHhhhcccc
Q psy8734 108 GTPYIEHPVAVAHI---LTHL-----GKVSNPV-VIISALLHDTVE 144 (264)
Q Consensus 108 G~PYi~H~l~VA~i---L~~l-----~g~~D~~-~liAALLHDvvE 144 (264)
.++-..|.+.||.+ |+.. .+ .|.+ ++..||+||+.|
T Consensus 35 ~EsvAeHS~~vA~ia~~la~~~~~~~~~-~d~~r~~~~aL~HDl~E 79 (184)
T 1xx7_A 35 PESVADHSYRVAFITLLLAEELKKKGVE-IDVEKALKIAIIHDLGE 79 (184)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHTTTTH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccCC-CCHHHHHHHHHHcCcHH
Confidence 35567899999875 3432 23 5775 788999999988
No 12
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=73.40 E-value=4.9 Score=33.82 Aligned_cols=51 Identities=22% Similarity=0.150 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHH---cCCCCCHH-HHHHHhhhcc
Q psy8734 86 NIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTH---LGKVSNPV-VIISALLHDT 142 (264)
Q Consensus 86 ~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~---l~g~~D~~-~liAALLHDv 142 (264)
.+.++.+|......+.. ....+.|.+.|+..... ..| .|.+ ...||||||+
T Consensus 14 l~~~~~~~v~~~~~~~~-----~~h~~~H~~rV~~~a~~la~~~~-~d~~~l~~AaLLHDI 68 (220)
T 2pq7_A 14 LREILNIVREAFKDYDD-----PAHDISHTFRVMENASEIASREK-CDLQKAIIAALLHDI 68 (220)
T ss_dssp HHHHHHHHHHHHTTCCC-----TTTSHHHHHHHHHHHHHHHHHHT-CCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCC-----CchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHcC
Confidence 45667777766655321 34457899999886532 224 4654 6699999998
No 13
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=72.81 E-value=2 Score=35.53 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=24.3
Q ss_pred chhhhHHHHHHHH---HHcCCCCCH-HHHHHHhhhccccC
Q psy8734 110 PYIEHPVAVAHIL---THLGKVSNP-VVIISALLHDTVED 145 (264)
Q Consensus 110 PYi~H~l~VA~iL---~~l~g~~D~-~~liAALLHDvvED 145 (264)
..+.|.+.||.+. +...|. |. ...+||||||+=.-
T Consensus 18 ~~~~Hs~~Va~~A~~lA~~~g~-~~~~~~~agLLHDIGk~ 56 (188)
T 2o08_A 18 HRYQHTIGVMETAIDLAKLYGA-DQQKAELAAIFHDYAKF 56 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-CHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHcCC
Confidence 3568999998764 333463 54 46789999997543
No 14
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=72.61 E-value=2 Score=35.55 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=23.9
Q ss_pred hhhhHHHHHHHH---HHcCCCCCH-HHHHHHhhhccccC
Q psy8734 111 YIEHPVAVAHIL---THLGKVSNP-VVIISALLHDTVED 145 (264)
Q Consensus 111 Yi~H~l~VA~iL---~~l~g~~D~-~~liAALLHDvvED 145 (264)
.+.|.+.||.+. +...| .|. ...+||||||+=..
T Consensus 20 ~~~Hs~~Va~~A~~lA~~~g-~d~~~~~~AgLLHDiGk~ 57 (190)
T 3ccg_A 20 RYKHSLGVMDTAVRLAGIYN-EDTEKARIAGLVHDCAKK 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-CCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHC-cCHHHHHHHHHHHHhcCC
Confidence 478999998764 33345 454 46799999997543
No 15
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=71.09 E-value=4.4 Score=35.84 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCCCC-HHHHHHHhhhcc
Q psy8734 87 IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSN-PVVIISALLHDT 142 (264)
Q Consensus 87 i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~~D-~~~liAALLHDv 142 (264)
|-+|+++.-...... +.+ ...|-+.|++++|...... | .| .-.+.+|||||+
T Consensus 38 i~ea~~~Ln~lvDeS-DPD-~~v~ql~HaLQTAe~ar~d-g-~d~dw~~laaLlHDL 90 (250)
T 2ibn_A 38 VMEAVDLLDGLVDES-DPD-VDFPNSFHAFQTAEGIRKA-H-PDKDWFHLVGLLHDL 90 (250)
T ss_dssp HHHHHHHGGGCCCTT-C----CCCHHHHHHHHHHHHHHH-S-TTCHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCc-CCC-CcccHHHHHHHHHHHHHHh-C-cChhHHHHHHHHhcc
Confidence 555555543332222 222 2345689999999999876 4 56 445599999986
No 16
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=71.09 E-value=2.8 Score=36.59 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=23.6
Q ss_pred hhhhHHHHHHHHHHcC---CCCCH-HHHHHHhhhccccC
Q psy8734 111 YIEHPVAVAHILTHLG---KVSNP-VVIISALLHDTVED 145 (264)
Q Consensus 111 Yi~H~l~VA~iL~~l~---g~~D~-~~liAALLHDvvED 145 (264)
-+.|..+|+.....+. | .|. ...+||||||+...
T Consensus 26 ~~~H~~rV~~~a~~ia~~~~-~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 26 DVCHFRRVWATAQKLAADDD-VDMLVILTACYFHDIVSL 63 (239)
T ss_dssp -CCHHHHHHHHHHHHTTTSC-SCTTHHHHHHHHTTTTC-
T ss_pred cHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhhcccc
Confidence 3789999988765432 3 344 36799999999764
No 17
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=70.71 E-value=5.7 Score=34.16 Aligned_cols=37 Identities=27% Similarity=0.290 Sum_probs=28.7
Q ss_pred CchhhhHHHHHHHHHHcCCCCCHHHHHHHhhhccccC
Q psy8734 109 TPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVED 145 (264)
Q Consensus 109 ~PYi~H~l~VA~iL~~l~g~~D~~~liAALLHDvvED 145 (264)
++--.|.+.||.+...+.|..|...+.+||+||+.|-
T Consensus 54 eSVAeHS~~va~ia~~l~~~~~~r~~~~aL~HD~~E~ 90 (207)
T 2gz4_A 54 FTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEY 90 (207)
T ss_dssp CBHHHHHHHHHHHHHHHCTTCCHHHHHHHHTTTTTHH
T ss_pred ccHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCchHh
Confidence 4456799999988654444467889999999999883
No 18
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=70.18 E-value=2.5 Score=35.30 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=24.3
Q ss_pred chhhhHHHHHHHH---HHcCCCCCH-HHHHHHhhhccccC
Q psy8734 110 PYIEHPVAVAHIL---THLGKVSNP-VVIISALLHDTVED 145 (264)
Q Consensus 110 PYi~H~l~VA~iL---~~l~g~~D~-~~liAALLHDvvED 145 (264)
..+.|.+.||.+. +...| .|. ...+||||||+=.-
T Consensus 26 ~~~~Hs~~Va~~A~~lA~~~g-~d~~~~~~AgLLHDIGK~ 64 (196)
T 2ogi_A 26 KRFNHVLGVERAAIELAERYG-YDKEKAGLAALLHDYAKE 64 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-CCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHC-cCHHHHHHHHHHHHcCCc
Confidence 3568999998764 33346 355 46799999997543
No 19
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua}
Probab=70.04 E-value=17 Score=31.17 Aligned_cols=38 Identities=29% Similarity=0.221 Sum_probs=25.5
Q ss_pred CCchhhhHHHHHHHHHHc-------CCCCCHH-HHHHHhhhccccC
Q psy8734 108 GTPYIEHPVAVAHILTHL-------GKVSNPV-VIISALLHDTVED 145 (264)
Q Consensus 108 G~PYi~H~l~VA~iL~~l-------~g~~D~~-~liAALLHDvvED 145 (264)
.++-..|.+.||.+..-+ ++..|.+ ++..||+||+.|-
T Consensus 28 ~EsvAeHS~~vA~iA~~La~~~~~~~~~vD~~r~~~maL~HDl~E~ 73 (216)
T 3mzo_A 28 EHSVAEHSYKVTSIAQFFGAVEEDAGNEVNWRALYEKALNHDYSEL 73 (216)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHccHHHH
Confidence 345567999998763221 1234653 6889999999993
No 20
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=68.57 E-value=4.4 Score=33.50 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=26.1
Q ss_pred CCchhhhHHHHHHHH---HHc-----CCCCCHH-HHHHHhhhcccc
Q psy8734 108 GTPYIEHPVAVAHIL---THL-----GKVSNPV-VIISALLHDTVE 144 (264)
Q Consensus 108 G~PYi~H~l~VA~iL---~~l-----~g~~D~~-~liAALLHDvvE 144 (264)
.++-..|...|+.+. +.. .| .|.. ++.+|||||+.|
T Consensus 30 ~esvaeHs~rVa~~A~~la~~~~~~~~~-~d~~~v~~~aLlHD~~E 74 (177)
T 2cqz_A 30 PESIADHSFGVAFITLVLADVLEKRGKR-IDVEKALKMAIVHDLAE 74 (177)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHTTTTH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhchHH
Confidence 355678999998765 432 23 5766 588999999986
No 21
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=58.26 E-value=15 Score=34.14 Aligned_cols=64 Identities=20% Similarity=0.101 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCC---CchhhhHHHHHHHHH---HcCCCCCHH-HHHHHhhhccccCCCC
Q psy8734 83 AIMNIVKATDFASHKHHFQRRKDPEG---TPYIEHPVAVAHILT---HLGKVSNPV-VIISALLHDTVEDTDT 148 (264)
Q Consensus 83 ~~~~i~~Al~~A~~aH~gQ~rk~~sG---~PYi~H~l~VA~iL~---~l~g~~D~~-~liAALLHDvvEDt~~ 148 (264)
|..+|-..-.|=.-.+..|.--...| ..-+.|.++|+.+.. ...| .+.+ +.+||||||+ -.++.
T Consensus 45 D~~rII~S~~FrRL~~ktQv~~~~~~d~~~tRl~HSl~Va~iar~ia~~l~-l~~~l~~~a~LlHDi-Gh~PF 115 (376)
T 2dqb_A 45 DRDRILHTTAFRRLEYKTQVLPGWAGDYYRTRLTHTLEVAQVSRSIARALG-LNEDLTEAIALSHDL-GHPPF 115 (376)
T ss_dssp HHHHHHHSHHHHHGGGSCSSSCSCC--CCCCHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHTTT-TCCSS
T ss_pred HHHHHHCCHHHHHHcCCCccccCCCCcccccHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhc-CCCcc
Confidence 34455555555555556664211113 234689999998743 3345 3554 5699999995 45553
No 22
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=54.78 E-value=8.1 Score=35.84 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=24.7
Q ss_pred CchhhhHHHHHHHHH---HcCCCCC-HHHHHHHhhhcccc
Q psy8734 109 TPYIEHPVAVAHILT---HLGKVSN-PVVIISALLHDTVE 144 (264)
Q Consensus 109 ~PYi~H~l~VA~iL~---~l~g~~D-~~~liAALLHDvvE 144 (264)
...+.|.++|+.+.. ...|.-+ ....+||||||+=.
T Consensus 49 ~~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~ 88 (371)
T 2hek_A 49 HTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGH 88 (371)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTC
T ss_pred CChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc
Confidence 456899999998643 2334322 34779999999654
No 23
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=44.02 E-value=20 Score=29.73 Aligned_cols=35 Identities=29% Similarity=0.281 Sum_probs=26.1
Q ss_pred CchhhhHHHHHHH---HHHcCCCCCH---H-HHHHHhhhcccc
Q psy8734 109 TPYIEHPVAVAHI---LTHLGKVSNP---V-VIISALLHDTVE 144 (264)
Q Consensus 109 ~PYi~H~l~VA~i---L~~l~g~~D~---~-~liAALLHDvvE 144 (264)
++-..|...||.+ |+...| .|. + .+..||+||+.|
T Consensus 37 EsVAeHS~~vA~iA~~la~~~~-vd~~~~~r~~~maL~HDl~E 78 (173)
T 1ynb_A 37 ESVAEHNFRAAIIAFILALKSG-ESVEKACKAATAALFHDLHE 78 (173)
T ss_dssp CBHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTTTTH
T ss_pred CcHHHHHHHHHHHHHHHhhhcC-CChhHHHHHHHHHHHcchHH
Confidence 4556799999887 655445 566 4 678899999988
No 24
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=42.16 E-value=6.4 Score=37.14 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhhccCC------CCCCCCCchhhhHHHHHHHHHHcC---CC----CC----HHHHHHHhhhcc
Q psy8734 83 AIMNIVKATDFASHKHHFQR------RKDPEGTPYIEHPVAVAHILTHLG---KV----SN----PVVIISALLHDT 142 (264)
Q Consensus 83 ~~~~i~~Al~~A~~aH~gQ~------rk~~sG~PYi~H~l~VA~iL~~l~---g~----~D----~~~liAALLHDv 142 (264)
...++-.--.|-.-.+..|- ..+ +...-+.|.++|+.+...+. +. .+ ..+.+||||||+
T Consensus 23 ~~~~ii~s~~fqRL~~~~Qlg~~~~v~p~-a~htRf~HSLgV~~la~~l~~~l~~~~~~~~~~d~~~~~~AaLlHDi 98 (410)
T 2q14_A 23 LLYDIVRHPLLQRLTRIKQVGLSSVVYPG-AQHTRFQHSLGAFYLMSEAITQLTSKGNFIFDSEAEAVQAAILLHDI 98 (410)
T ss_dssp HHHHHHHSHHHHGGGGSBTTTTTTTTCTT-CCCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCHHHHhHhhhhccCCceeecCC-CCCCeeehHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc
Confidence 34455555555444444452 111 12245789999998754321 10 12 235799999995
No 25
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=39.22 E-value=21 Score=32.07 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=22.9
Q ss_pred Cchh-hhHHHHHHHHH---HcCCCCCHH----HHHHHhhhccc
Q psy8734 109 TPYI-EHPVAVAHILT---HLGKVSNPV----VIISALLHDTV 143 (264)
Q Consensus 109 ~PYi-~H~l~VA~iL~---~l~g~~D~~----~liAALLHDvv 143 (264)
.+|. .|.+.|+.+.. ...|+-+.+ ..+||||||+=
T Consensus 164 ~~~~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDIG 206 (328)
T 3tm8_A 164 DKTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYG 206 (328)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTGG
T ss_pred CchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCC
Confidence 4554 69999988643 334543444 44599999973
No 26
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A*
Probab=30.47 E-value=13 Score=35.92 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=22.0
Q ss_pred hhhhHHHHHHHHHHcC---------------CCCC--H-HHHHHHhhhccccCCC
Q psy8734 111 YIEHPVAVAHILTHLG---------------KVSN--P-VVIISALLHDTVEDTD 147 (264)
Q Consensus 111 Yi~H~l~VA~iL~~l~---------------g~~D--~-~~liAALLHDvvEDt~ 147 (264)
-+.|.++|+.+..... ++.+ . -+.+||||||+ -.++
T Consensus 87 Rf~HSLgV~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~~v~~AaLlHDI-GH~P 140 (480)
T 3irh_A 87 RFSHSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDV-GHGP 140 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSBHHHHGGGSBCGGGHHHHHHHHHHTTT-TCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCccccccccCCCHHHHHHHHHHHHHhcc-CCCC
Confidence 3789999998753211 0111 1 24699999994 4444
No 27
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=28.68 E-value=43 Score=29.42 Aligned_cols=34 Identities=32% Similarity=0.468 Sum_probs=23.8
Q ss_pred CchhhhHHHHHHHH---HHcCCCCCH-HHHHHHhhhcc
Q psy8734 109 TPYIEHPVAVAHIL---THLGKVSNP-VVIISALLHDT 142 (264)
Q Consensus 109 ~PYi~H~l~VA~iL---~~l~g~~D~-~~liAALLHDv 142 (264)
..++.|.+.||.+. +...|..+. ....||+|||+
T Consensus 117 ~~~~~hs~~va~~a~~la~~~~~~~~~~~~~agllHDI 154 (305)
T 3hc1_A 117 STLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHDV 154 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 35678999998764 444454344 47799999996
No 28
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=28.28 E-value=62 Score=27.41 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=27.4
Q ss_pred CCchhhhHHHHHHHHHHcCC-CCCH-HHHHHHhhhccccC
Q psy8734 108 GTPYIEHPVAVAHILTHLGK-VSNP-VVIISALLHDTVED 145 (264)
Q Consensus 108 G~PYi~H~l~VA~iL~~l~g-~~D~-~~liAALLHDvvED 145 (264)
.++--.|...||.+..-+.+ ..|. .++..||+||+.|-
T Consensus 43 ~ESVAEHS~~vAliA~~l~~~~vD~~r~~~maL~HDl~E~ 82 (204)
T 4dmb_A 43 PESVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAEC 82 (204)
T ss_dssp CCBHHHHHHHHHHHHHHSCCTTSCHHHHHHHHHHTTTTHH
T ss_pred CCcHHHHHHHHHHHHHHHccccCCHHHHHHHHHhcchHHh
Confidence 35667899999987654331 2465 57889999999983
No 29
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=27.85 E-value=74 Score=28.58 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=25.3
Q ss_pred CCchhhhHHHHHHHHHHcCCCCC-HHHHHHHhhhcc
Q psy8734 108 GTPYIEHPVAVAHILTHLGKVSN-PVVIISALLHDT 142 (264)
Q Consensus 108 G~PYi~H~l~VA~iL~~l~g~~D-~~~liAALLHDv 142 (264)
..|-|.|++++|+.+.... -+ .=...++|+||+
T Consensus 96 dl~qi~H~lQTAEaiR~d~--pp~dW~qLtGLiHDL 129 (289)
T 2huo_A 96 DFPNSFHAFQTAEGIRKAH--PDKDWFHLVGLLHDL 129 (289)
T ss_dssp CSCHHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTG
T ss_pred chhHHHHHHHHHHHHHHhC--CCcchheeeeecccc
Confidence 4466899999999998763 34 235678999986
No 30
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Probab=25.72 E-value=17 Score=35.41 Aligned_cols=65 Identities=18% Similarity=0.207 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHhhccCC------CCCCCCCchhhhHHHHHHHHHHcC----------CCCCH----HHHHHHhhhc
Q psy8734 82 DAIMNIVKATDFASHKHHFQR------RKDPEGTPYIEHPVAVAHILTHLG----------KVSNP----VVIISALLHD 141 (264)
Q Consensus 82 ~~~~~i~~Al~~A~~aH~gQ~------rk~~sG~PYi~H~l~VA~iL~~l~----------g~~D~----~~liAALLHD 141 (264)
....+|-.--.|=.-.+..|. ..+ +...-+.|.++|+.+..... + .+. -..+||||||
T Consensus 32 ~~~~riI~s~~FqRLr~i~Qlg~~~~v~pg-a~hTRf~HSLgV~~la~~i~~~l~~~~~~~~-~~~~d~~~v~~AaLlHD 109 (528)
T 3u1n_A 32 PLLVRIIDTPQFQRLRYIKQLGGGYYVFPG-ASHNRFEHSLGVGYLAGCLVHALGEKQPELQ-ISERDVLCVQIAGLCHD 109 (528)
T ss_dssp HHHHHHHSSHHHHGGGGSBTTGGGTTTCTT-CCCBHHHHHHHHHHHHHHHHHHHHHHCGGGC-CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHhhccCccccCCcccccCC-CCcCHHHHHHHHHHHHHHHHHHHHhhCcccC-CCHHHHHHHHHHHHHhc
Confidence 444555555555444444553 111 11234789999998754321 1 111 2457999999
Q ss_pred cccCCCCC
Q psy8734 142 TVEDTDTT 149 (264)
Q Consensus 142 vvEDt~~t 149 (264)
+-.++.+
T Consensus 110 -iGH~PFs 116 (528)
T 3u1n_A 110 -LGHGPFS 116 (528)
T ss_dssp -TTCBTTB
T ss_pred -cCCCCcc
Confidence 4556543
No 31
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=22.20 E-value=53 Score=28.58 Aligned_cols=32 Identities=9% Similarity=0.087 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHHcCCCC---C-HHHHHHHhhhcc
Q psy8734 111 YIEHPVAVAHILTHLGKVS---N-PVVIISALLHDT 142 (264)
Q Consensus 111 Yi~H~l~VA~iL~~l~g~~---D-~~~liAALLHDv 142 (264)
++.|.+.|+.+...+.... + .....||||||+
T Consensus 125 ~~~hs~~va~~a~~la~~~~~~~~e~a~~aGLLHDI 160 (297)
T 1vqr_A 125 FLKTCNEEATFIANWLNDEDKKLSHLLVPCAMLLRL 160 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHc
Confidence 6779988887655432111 2 246789999996
No 32
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd; deoxyguanosinetriphosphate triphsphohydrolase, pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas syringae PV}
Probab=21.69 E-value=23 Score=33.72 Aligned_cols=66 Identities=17% Similarity=0.104 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCCC--C-CCCchhhhHHHHHHHHHHc---CCC---------CC-----HHHHHHHhhhcc
Q psy8734 83 AIMNIVKATDFASHKHHFQRRKD--P-EGTPYIEHPVAVAHILTHL---GKV---------SN-----PVVIISALLHDT 142 (264)
Q Consensus 83 ~~~~i~~Al~~A~~aH~gQ~rk~--~-sG~PYi~H~l~VA~iL~~l---~g~---------~D-----~~~liAALLHDv 142 (264)
|..+|-.--.|=.-.+..|.-.. + .-..=++|.++|+.+.... .+. .+ .-+.+|||+||
T Consensus 32 D~~rii~s~~frRL~~~tQv~~~~~~~~~htR~~Hsl~v~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~a~L~HD- 110 (451)
T 2pgs_A 32 DHDRIIFSGAFRRLGRKTQVHPVSSNDHIHTRLTHSLEVSCVGRSLGMRVGETLRAALPDWCDPSDLGMVVQSACLAHD- 110 (451)
T ss_dssp HHHHHHHSHHHHGGGGCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHhCCHHHhhhccCCcccCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHhhc-
Confidence 34555555556555566664211 0 0112378999999875421 110 01 13569999999
Q ss_pred ccCCCCC
Q psy8734 143 VEDTDTT 149 (264)
Q Consensus 143 vEDt~~t 149 (264)
+-.+|.+
T Consensus 111 iGH~PFg 117 (451)
T 2pgs_A 111 IGNPPFG 117 (451)
T ss_dssp TTCCTTH
T ss_pred cCCCCcc
Confidence 5666643
No 33
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=21.63 E-value=47 Score=28.73 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=23.5
Q ss_pred CchhhhHHHHHHHH---HHcCCCCCH-HHHHHHhhhcc
Q psy8734 109 TPYIEHPVAVAHIL---THLGKVSNP-VVIISALLHDT 142 (264)
Q Consensus 109 ~PYi~H~l~VA~iL---~~l~g~~D~-~~liAALLHDv 142 (264)
..++.|.+.||.+. +...|. |. +...||+|||+
T Consensus 104 ~~~~~hs~~~a~~a~~la~~~~~-~~~~~~~agLLhdi 140 (275)
T 3m1t_A 104 ADFWGNTFEVAIICQELAKRLGT-LPEEAFTCGILHSI 140 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS-CHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHc
Confidence 35788999988764 333353 54 47899999986
Done!