RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8734
(264 letters)
>gnl|CDD|222047 pfam13328, HD_4, HD domain. HD domains are metal dependent
phosphohydrolases.
Length = 156
Score = 107 bits (269), Expect = 5e-29
Identities = 55/136 (40%), Positives = 70/136 (51%), Gaps = 15/136 (11%)
Query: 90 ATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTT 149
A FA+ H QR+ G PY+ H + VA IL LG + + +ALLHD VEDT T
Sbjct: 1 ALAFAAKLHAGQRKGT--GEPYLSHALEVAAILAELG--LDEETLAAALLHDVVEDTGTL 56
Query: 150 FEEIEREFGPRVRSVVEELTDNKHMTR-----DERKRCQI------LHAPHSSHEAKLVK 198
EEI FGP V +VE +T K + R ERK Q+ L A L+K
Sbjct: 57 EEEIRERFGPEVARLVEGVTKLKRIRRLAEDWAERKAEQLENLRKMLLAMADDIRVVLIK 116
Query: 199 LADKLHNLRDIERSLP 214
LAD+LHNLR + + P
Sbjct: 117 LADRLHNLRSLAAAKP 132
>gnl|CDD|223394 COG0317, SpoT, Guanosine polyphosphate
pyrophosphohydrolases/synthetases [Signal transduction
mechanisms / Transcription].
Length = 701
Score = 107 bits (269), Expect = 2e-26
Identities = 56/159 (35%), Positives = 75/159 (47%), Gaps = 19/159 (11%)
Query: 79 HSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISAL 138
+ P + + KA +A H Q RK G PYI HP+ VA IL L + + +AL
Sbjct: 19 YLPPVDIELKKAWYYARQAHGGQTRKS--GEPYISHPLEVAEILAELH--MDMETLAAAL 74
Query: 139 LHDTVEDTDTTFEEIEREFGPRVRSVVEELTDNK-------HMTRDERKRCQILHAPHSS 191
LHDT+EDT T E IE FG V +VE +T K ++L A
Sbjct: 75 LHDTIEDTPVTEELIEEIFGKEVAKLVEGVTKLKKIGQLSSEEELQAENLRKMLLAMVKD 134
Query: 192 HEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWAR 230
L+KLAD+LHNLR ++ N EE++ AR
Sbjct: 135 IRVVLIKLADRLHNLRTLK-----NLDEEKRR---RIAR 165
>gnl|CDD|213552 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/SpoT family. The
functions of E. coli RelA and SpoT differ somewhat. RelA
(EC 2.7.6.5) produces pppGpp (or ppGpp) from ATP and GTP
(or GDP). SpoT (EC 3.1.7.2) degrades ppGpp, but may also
act as a secondary ppGpp synthetase. The two proteins
are strongly similar. In many species, a single homolog
to SpoT and RelA appears reponsible for both ppGpp
synthesis and ppGpp degradation. (p)ppGpp is a
regulatory metabolite of the stringent response, but
appears also to be involved in antibiotic biosynthesis
in some species [Cellular processes, Adaptations to
atypical conditions].
Length = 683
Score = 95.2 bits (237), Expect = 4e-22
Identities = 53/136 (38%), Positives = 76/136 (55%), Gaps = 17/136 (12%)
Query: 90 ATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTT 149
A + A H Q+RK G PYI HP+AVA IL LG + + +ALLHD +EDT T
Sbjct: 1 ALEIAKDLHEGQKRK--SGEPYIIHPLAVALILAELG--MDEETVCAALLHDVIEDTPVT 56
Query: 150 FEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPH-------SSHE--AKLVKLA 200
EEIE EFG V +V+ +T +T+ ++K Q L A + + + ++KLA
Sbjct: 57 EEEIEEEFGEEVAELVDGVTK---ITKLKKKSRQELQAENFRKMILAMAQDIRVIVIKLA 113
Query: 201 DKLHNLRDIERSLPVN 216
D+LHN+R ++ LP
Sbjct: 114 DRLHNMRTLD-FLPPE 128
>gnl|CDD|236843 PRK11092, PRK11092, bifunctional (p)ppGpp synthetase II/
guanosine-3',5'-bis pyrophosphate
3'-pyrophosphohydrolase; Provisional.
Length = 702
Score = 72.1 bits (177), Expect = 2e-14
Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 12/134 (8%)
Query: 81 PDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLH 140
D I + +A A H Q R G PYI HPVAVA IL + + +++ALLH
Sbjct: 17 EDQIKRLRQAYLVARDAHEGQTRS--SGEPYITHPVAVACILAEMRL--DYETLMAALLH 72
Query: 141 DTVEDTDTTFEEIEREFGPRVRSVVEELTD-NKHMTRDERKRCQ------ILHAPHSSHE 193
D +EDT T++++E+ FG V +VE ++ +K RD +K Q ++ A
Sbjct: 73 DVIEDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRD-KKEAQAENFRKMIMAMVQDIR 131
Query: 194 AKLVKLADKLHNLR 207
L+KLAD+ HN+R
Sbjct: 132 VILIKLADRTHNMR 145
>gnl|CDD|238032 cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD'
motif.
Length = 145
Score = 47.3 bits (112), Expect = 8e-07
Identities = 32/144 (22%), Positives = 49/144 (34%), Gaps = 27/144 (18%)
Query: 110 PYIEHPVAVAHILTHLGKVSNP------VVIISALLHDTVEDTDTTF------------- 150
EH + VA + L + ++ ++ALLHD +
Sbjct: 2 HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPGTPDAITEEESELEKDHA 61
Query: 151 ----EEIEREFGPRVRSVVEEL---TDNKHMTR-DERKRCQILHAPHSSHEAKLVKLADK 202
E + V +++EL D H R D L + EA++VKLAD+
Sbjct: 62 IVGAEILRELLLEEVIKLIDELILAVDASHHERLDGLGYPDGLKGEEITLEARIVKLADR 121
Query: 203 LHNLRDIERSLPVNWTEERKTQYF 226
L LR R EE +
Sbjct: 122 LDALRRDSREKRRRIAEEDLEELL 145
>gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved
'HD' motif. Includes eukaryotic cyclic nucleotide
phosphodiesterases (PDEc). This profile/HMM does not
detect HD homologues in bacterial glycine aminoacyl-tRNA
synthetases (beta subunit).
Length = 124
Score = 41.9 bits (98), Expect = 4e-05
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 15/121 (12%)
Query: 110 PYIEHPVAVAH----ILTHLGKVSNPVVIISALLHDTVEDTDT------TFEEIEREFGP 159
EH + VA + LG + +++++ALLHD + T + F
Sbjct: 4 HVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGTPDSFLVKTSVLEDHHFIG 63
Query: 160 RVRSVVEELTD-----NKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNLRDIERSLP 214
+ EE + +R L + EA++VK+AD+L LR R
Sbjct: 64 AEILLEEEEPRILEEILRTAILSHHERPDGLRGEPITLEARIVKVADRLDALRADRRYRR 123
Query: 215 V 215
V
Sbjct: 124 V 124
>gnl|CDD|216815 pfam01966, HD, HD domain. HD domains are metal dependent
phosphohydrolases.
Length = 111
Score = 39.9 bits (93), Expect = 1e-04
Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 15/111 (13%)
Query: 111 YIEHPVAVAHILTHLGKVSNPV----VIISALLHDTVEDT----DTTFEEIEREFGPRVR 162
+EH + VA + L + + ++++ALLHD + EI
Sbjct: 1 VLEHSLRVALLARELAEELGELDRELLLLAALLHDIGKPPFGDEKPLLFEIFLGHAVVGA 60
Query: 163 SVVEELTDNK------HMTRDERKRCQI-LHAPHSSHEAKLVKLADKLHNL 206
++ EL + + + + + S EA++VKLAD+L L
Sbjct: 61 EILRELEKPLGLEDVLKLILEHHESWEGAGYPEEISLEARIVKLADRLDAL 111
>gnl|CDD|106966 PHA00657, PHA00657, crystallin beta/gamma motif-containing protein.
Length = 2052
Score = 32.1 bits (72), Expect = 0.36
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 200 ADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDAL 250
A++L + I+ ++ ++ E K Q+ WA D+ +G RG +A ++ L L
Sbjct: 1664 ANRLLRSQTIDGAIREHYGPEAKQQFKTWAADIAEGERGADAAVDIALSRL 1714
>gnl|CDD|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding. This family
is found in mammals where it is localised at cell-cell
adherens junctions, and in Sch. pombe and other fungi
where it anchors spindle-pole bodies to spindle
microtubules. It is a coiled-coil structure, and in
pombe, it is required for anchoring the minus end of
spindle microtubules to the centrosome equivalent, the
spindle-pole body. The name ADIP derives from the family
being composed of Afadin- and alpha -Actinin-Binding
Proteins Localised at Cell-Cell Adherens Junctions.
Length = 149
Score = 29.2 bits (66), Expect = 1.3
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 177 DERKRCQILHAPHSSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQY 225
D + +L A E KL L KL N ++ E N ++RKTQY
Sbjct: 82 DLERELALLQAKERQLEKKLKTLEQKLKNEKE-EVQRLKNIIQQRKTQY 129
>gnl|CDD|216422 pfam01300, Sua5_yciO_yrdC, Telomere recombination. This domain has
been shown to bind preferentially to dsRNA. The domain
is found in SUA5 as well as HypF and YrdC. It has also
been shown to be required for telomere recombniation in
yeast.
Length = 178
Score = 27.8 bits (63), Expect = 3.6
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 114 HPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIEREFGPRV 161
HP+A +L LG+ P+V SA L E + T EE+ E G V
Sbjct: 106 HPLARL-LLEALGE---PLVATSANLSG--EPSATDAEEVLEELGGIV 147
>gnl|CDD|237480 PRK13721, PRK13721, conjugal transfer ATP-binding protein TraC;
Provisional.
Length = 844
Score = 28.5 bits (64), Expect = 4.6
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
Query: 144 EDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQIL--HAPHSSHEAKLVKLAD 201
+D ++ +E F +VR+ L + +IL H + A L ++AD
Sbjct: 199 PYSDLNYQCVEDSFDLKVRADYLTLGLRE---NGRNSTARILNFHLAKNPEIAFLWQMAD 255
Query: 202 KLHNLRDIERSLP----VNWT----EERKTQ 224
NL + E S+ + T ++ KTQ
Sbjct: 256 NYSNLLNPELSISCPFILTLTLEVEDQVKTQ 286
>gnl|CDD|223088 COG0009, SUA5, Putative translation factor (SUA5) [Translation,
ribosomal structure and biogenesis].
Length = 211
Score = 28.0 bits (63), Expect = 5.0
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 114 HPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIEREFGPRVRSVV 165
HP+A+A ++ LG+ P+ SA L + + TT EE+ +FG +V ++
Sbjct: 125 HPIALA-LIEALGE---PLASTSANLSG--QPSPTTAEEVRADFGGQVDLII 170
>gnl|CDD|224808 COG1896, COG1896, Predicted hydrolases of HD superfamily [General
function prediction only].
Length = 193
Score = 27.7 bits (62), Expect = 5.3
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 21/100 (21%)
Query: 117 AVAHILTHLGKVSNP--VVIISALLHDTVE----DTDTTF----EEIEREFGPRVRSVVE 166
+A IL G NP V ++ AL+HD E D T + +E + +
Sbjct: 47 LLADILNAKGGEVNPEKVALM-ALVHDLPEALTGDIPTPVKYARAGLYKEEEEAEEAAIH 105
Query: 167 ELTDNKHMTRD---ERKRCQILHAPHSSHEAKLVKLADKL 203
L + E ++ SS EA++VK ADKL
Sbjct: 106 LLFGLPEELLELFREYEKR-------SSLEARIVKDADKL 138
>gnl|CDD|180630 PRK06582, PRK06582, coproporphyrinogen III oxidase; Provisional.
Length = 390
Score = 27.5 bits (61), Expect = 7.9
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 108 GTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFE 151
GTP + +PV V I+ K+SN + II T+E T+FE
Sbjct: 71 GTPSLMNPVIVEGIIN---KISN-LAIIDNQTEITLETNPTSFE 110
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,700,295
Number of extensions: 1318591
Number of successful extensions: 1373
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1358
Number of HSP's successfully gapped: 26
Length of query: 264
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 169
Effective length of database: 6,723,972
Effective search space: 1136351268
Effective search space used: 1136351268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.5 bits)