RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8734
         (264 letters)



>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA
           N-terminal domain {Streptococcus equisimilis [TaxId:
           119602]}
          Length = 192

 Score = 66.7 bits (162), Expect = 4e-14
 Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 19/185 (10%)

Query: 79  HSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISAL 138
            +      + KA D+A+  H +Q RK  E  PYI HP+ VA IL       + V +    
Sbjct: 16  MNETDAAFVKKALDYATAAHFYQVRKSGE--PYIVHPIQVAGILAD--LHLDAVTVACGF 71

Query: 139 LHDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKR------CQILHAPHSSH 192
           LHD VEDTD T + IE +FG  VR +V+ +T    +     +        ++L A     
Sbjct: 72  LHDVVEDTDITLDNIEFDFGKDVRDIVDGVTKLGKVEYKSHEEQLAENHRKMLMAMSKDI 131

Query: 193 EAKLVKLADKLHNLRDIE---RSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDA 249
              LVKLAD+LHN+R ++   +      + E    Y   A       R   + I+ EL+ 
Sbjct: 132 RVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAH------RLGISRIKWELED 185

Query: 250 LFAKY 254
           L  +Y
Sbjct: 186 LAFRY 190


>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 481

 Score = 30.1 bits (67), Expect = 0.28
 Identities = 11/72 (15%), Positives = 25/72 (34%)

Query: 112 IEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELTDN 171
           +   + +  +   L   +  + ++SA+    V   D TFE+I       +    E   D+
Sbjct: 287 VSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDH 346

Query: 172 KHMTRDERKRCQ 183
                 + +   
Sbjct: 347 YKKYLAKLRSIN 358


>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664
           {Lactobacillus plantarum [TaxId: 1590]}
          Length = 215

 Score = 29.6 bits (66), Expect = 0.31
 Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 9/120 (7%)

Query: 112 IEHPVAVAHILTHLGKVSNP---VVIISALLHDTVED----TDTTFEEIEREFGPRVRSV 164
            +H   V  +   L K       + + +A LHD ++D          +            
Sbjct: 27  RDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVIDDKLMANPAKAHQDLIVQLNAQNVT 86

Query: 165 VEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNL--RDIERSLPVNWTEERK 222
            ++ T    +                S E ++V+ AD+L  +    I R+L  +     K
Sbjct: 87  ADDQTAIFAIIDHMSFSKSFNGPQKLSLEGQVVQDADRLDAIGAIGIARALYYSGHVGEK 146


>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889
           {Listeria innocua [TaxId: 1642]}
          Length = 201

 Score = 29.3 bits (65), Expect = 0.36
 Identities = 23/151 (15%), Positives = 51/151 (33%), Gaps = 8/151 (5%)

Query: 87  IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDT 146
           I+ A ++     HF+         +I+    ++  +          + ++AL HD  +  
Sbjct: 7   ILSAKNWM--HSHFENETTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIK 64

Query: 147 DTTFEE----IEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADK 202
            TT E+        +        E +     + +    +         + E K+V+ AD+
Sbjct: 65  LTTDEQEATKTLINWMETKEIPSELIKKIIRIIQSVSFKKGKNTFKALTIEEKIVQDADR 124

Query: 203 LHNL--RDIERSLPVNWTEERKTQYFNWARD 231
           L  +    I R+        R+    N  ++
Sbjct: 125 LDAIGAIGIARTFTYGGAHNREIANQNNPKN 155


>d2paqa1 a.211.1.1 (A:2-187) 5'-nucleotidase YfbR {Escherichia coli
           [TaxId: 562]}
          Length = 186

 Score = 25.0 bits (54), Expect = 8.7
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 8/86 (9%)

Query: 126 GKVSNPVVIISALLHDTVE--------DTDTTFEEIEREFGPRVRSVVEELTDNKHMTRD 177
           G V+   + + A+ HD  E               +I +E+    +   ++L D       
Sbjct: 53  GNVNAERIALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQKLVDMVPEELR 112

Query: 178 ERKRCQILHAPHSSHEAKLVKLADKL 203
           +     I    +S  E  LVK AD L
Sbjct: 113 DIFAPLIDEHAYSDEEKSLVKQADAL 138


>d2gz4a1 a.211.1.1 (A:6-205) Hypothetical protein Atu1052
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 200

 Score = 24.9 bits (54), Expect = 8.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 113 EHPVAVAHILTHLGKVSNPVVIISALLHDTVE 144
           +H + V  I   +   + P  +  ALLHD  E
Sbjct: 53  QHCLIVETIFCRMCPGATPDEMQMALLHDAPE 84


>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog
           zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]}
          Length = 320

 Score = 25.1 bits (53), Expect = 9.8
 Identities = 7/27 (25%), Positives = 9/27 (33%)

Query: 93  FASHKHHFQRRKDPEGTPYIEHPVAVA 119
            A H H   R  D  G  +I     + 
Sbjct: 260 IAGHDHDGGRCTDSSGAQHITLEGVIE 286


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0551    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 981,461
Number of extensions: 45775
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 16
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)